BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004187
(770 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99LI7|CSTF3_MOUSE Cleavage stimulation factor subunit 3 OS=Mus musculus GN=Cstf3 PE=1
SV=1
Length = 717
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 252/748 (33%), Positives = 377/748 (50%), Gaps = 83/748 (11%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D ++LF
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 89
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGT--EGQEETRKAFDFMLSHVGSDISSGPIWLEY 138
RCL+ L + LW+CY+ ++R E KG +E+ +A+DF L +G +I S IW++Y
Sbjct: 90 RCLMKVLHIDLWKCYLSYVR---ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY 146
Query: 139 ITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLL 198
I FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK ++
Sbjct: 147 INFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMI 206
Query: 199 SEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI 258
+ Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP R
Sbjct: 207 EDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 266
Query: 259 -DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAAIK 303
D KR++F YEQCL+ L H+PDIWY+ A + +S + D A
Sbjct: 267 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 326
Query: 304 VFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362
+++RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F R
Sbjct: 327 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR 386
Query: 363 RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 422
R EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P Y
Sbjct: 387 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 446
Query: 423 ILEYADFLSRLNDDRNIRALFERALS--SLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 480
+L Y D+LS LN+D N R LFER L+ SLPPE+S E+W RF FE GDL S LKVE+
Sbjct: 447 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 506
Query: 481 RRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDK 540
RR A E +AL +V RY FMDL+PCS+ +L L K+++ +
Sbjct: 507 RRFTAFREEYEGKETAL------LVDRYKFMDLYPCSASELKALG-----YKDVS-RAKL 554
Query: 541 SALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSA 600
+A+ P + L PDT QM+ + PR G+ P
Sbjct: 555 AAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVP-------- 606
Query: 601 LNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLP---AVEGPTPNVDIVLSICLQ 657
GG+ PA + LP +GP VD ++ I +
Sbjct: 607 -------------GGVF--------PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRR 645
Query: 658 SDIPTGQMGKSPTTYPTPIPTGAARSASGISGSNKSHPTPSGSSLKQSKDKQSLKRKDIG 717
IP I TG A + + G+ P S + L +++KR +
Sbjct: 646 CKIPNT------VEEAVRIITGGAPELA-VEGNG---PVESSAVL-----TKAVKRPNED 690
Query: 718 QDDDETTTVQSQPQPRDFFRIRQMKKAR 745
D+DE P D +R RQ K+ R
Sbjct: 691 SDEDEEKGAVVPPV-HDIYRARQQKRIR 717
>sp|Q12996|CSTF3_HUMAN Cleavage stimulation factor subunit 3 OS=Homo sapiens GN=CSTF3 PE=1
SV=1
Length = 717
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 252/748 (33%), Positives = 377/748 (50%), Gaps = 83/748 (11%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D ++LF
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 89
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGT--EGQEETRKAFDFMLSHVGSDISSGPIWLEY 138
RCL+ L + LW+CY+ ++R E KG +E+ +A+DF L +G +I S IW++Y
Sbjct: 90 RCLMKVLHIDLWKCYLSYVR---ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY 146
Query: 139 ITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLL 198
I FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK ++
Sbjct: 147 INFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMI 206
Query: 199 SEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI 258
+ Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP R
Sbjct: 207 EDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 266
Query: 259 -DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAAIK 303
D KR++F YEQCL+ L H+PDIWY+ A + +S + D A
Sbjct: 267 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 326
Query: 304 VFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362
+++RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F R
Sbjct: 327 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR 386
Query: 363 RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 422
R EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P Y
Sbjct: 387 RAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 446
Query: 423 ILEYADFLSRLNDDRNIRALFERALS--SLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 480
+L Y D+LS LN+D N R LFER L+ SLPPE+S E+W RF FE GDL S LKVE+
Sbjct: 447 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 506
Query: 481 RRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDK 540
RR A E +AL +V RY FMDL+PCS+ +L L K+++ +
Sbjct: 507 RRFTAFKEEYEGKETAL------LVDRYKFMDLYPCSASELKALG-----YKDVS-RAKL 554
Query: 541 SALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSA 600
+A+ P + L PDT QM+ + PR G+ P
Sbjct: 555 AAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVP-------- 606
Query: 601 LNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLP---AVEGPTPNVDIVLSICLQ 657
GG+ PA + LP +GP VD ++ I +
Sbjct: 607 -------------GGVF--------PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRR 645
Query: 658 SDIPTGQMGKSPTTYPTPIPTGAARSASGISGSNKSHPTPSGSSLKQSKDKQSLKRKDIG 717
IP I TG A + + G+ P S + L +++KR +
Sbjct: 646 CKIPNT------VEEAVRIITGGAPELA-VEGNG---PVESNAVL-----TKAVKRPNED 690
Query: 718 QDDDETTTVQSQPQPRDFFRIRQMKKAR 745
D+DE P D +R RQ K+ R
Sbjct: 691 SDEDEEKGAVVPPV-HDIYRARQQKRIR 717
>sp|Q5RDW9|CSTF3_PONAB Cleavage stimulation factor subunit 3 OS=Pongo abelii GN=CSTF3 PE=2
SV=1
Length = 717
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 251/748 (33%), Positives = 376/748 (50%), Gaps = 83/748 (11%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y+++ L A + P+ +A YE+L++ FP++ +FWK Y+EA + N D ++LF
Sbjct: 30 YDLDAWSTLIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 89
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGT--EGQEETRKAFDFMLSHVGSDISSGPIWLEY 138
RCL+ L + LW+CY+ ++R E KG +E+ +A+DF L +G +I S IW++Y
Sbjct: 90 RCLMKVLHIDLWKCYLSYVR---ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY 146
Query: 139 ITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLL 198
I FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK ++
Sbjct: 147 INFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMI 206
Query: 199 SEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI 258
+ Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP R
Sbjct: 207 EDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 266
Query: 259 -DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAAIK 303
D KR++F YEQCL+ L H+PDIWY+ A + +S + D A
Sbjct: 267 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 326
Query: 304 VFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362
+++RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F R
Sbjct: 327 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR 386
Query: 363 RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 422
R EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P Y
Sbjct: 387 RAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 446
Query: 423 ILEYADFLSRLNDDRNIRALFERALS--SLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 480
+L Y D+LS LN+D N R LFER L+ SLPPE+S E+W RF FE GDL S LKVE+
Sbjct: 447 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 506
Query: 481 RRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDK 540
RR A E +AL +V RY FMDL+PCS+ +L L K+++ +
Sbjct: 507 RRFTAFKEEYEGKETAL------LVDRYKFMDLYPCSASELKALG-----YKDVS-RAKL 554
Query: 541 SALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSA 600
+A+ P + L PDT QM+ + PR G+ P
Sbjct: 555 AAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVP-------- 606
Query: 601 LNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLP---AVEGPTPNVDIVLSICLQ 657
GG+ PA + LP +GP VD ++ I +
Sbjct: 607 -------------GGVF--------PVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRR 645
Query: 658 SDIPTGQMGKSPTTYPTPIPTGAARSASGISGSNKSHPTPSGSSLKQSKDKQSLKRKDIG 717
IP I TG A + + G+ P S + L +++KR +
Sbjct: 646 CKIPNT------VEEAVRIITGGAPELA-VEGNG---PVESNAVL-----TKAVKRPNED 690
Query: 718 QDDDETTTVQSQPQPRDFFRIRQMKKAR 745
D+DE P D +R RQ K+ R
Sbjct: 691 SDEDEEKGAVVPPV-HDIYRARQQKRIR 717
>sp|P25991|SUF_DROME Protein suppressor of forked OS=Drosophila melanogaster GN=su(f)
PE=1 SV=2
Length = 765
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 242/779 (31%), Positives = 385/779 (49%), Gaps = 105/779 (13%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y++E+ ++ A P+ + +YE L++VFPT A++WK Y+E M + ++LF
Sbjct: 31 YDIESWSVMIREAQTRPIHEVRSLYESLVNVFPTTARYWKLYIEMEMRSRYYERVEKLFQ 90
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 140
RCL+ L + LW+ Y+ ++++ T +E+ +A+DF L +G D+ S IW +YI
Sbjct: 91 RCLVKILNIDLWKLYLTYVKETKSGLSTH-KEKMAQAYDFALEKIGMDLHSFSIWQDYIY 149
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FL+ + A+ E+Q++ A+R+ YQ+AVVTP +EQLWKDY FE +++ +++ + E
Sbjct: 150 FLRGVEAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINPIISEKMSLE 209
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI-D 259
Y +AR V +E + + + ++ N+ AVPPT + +E +Q WKR +T+EK NP R D
Sbjct: 210 RSKDYMNARRVAKELEYHTKGLNRNLPAVPPTLTKEEVKQVELWKRFITYEKSNPLRTED 269
Query: 260 TASSNKRIIFTYEQCLMYLYHYPDIWYD-------------------------------- 287
TA +R++F EQCL+ L H+P +W+
Sbjct: 270 TALVTRRVMFATEQCLLVLTHHPAVWHQASQFLDTSARVLTEKGVRTSVENISPILCVPV 329
Query: 288 ---------YATWNAKSGS-----IDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAI 332
+A W AK D + +R++ L + +L +A+A+ EE R
Sbjct: 330 VNQIEWVMAFAWWWAKDVQAAKIFADECANILERSINGVLNRNALLYFAYADFEEGRLKY 389
Query: 333 AAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 392
+Y LL L ++Q+++F RR EG+++AR F AR+ YH++VA A
Sbjct: 390 EKVHTMYNKLLQLPDIDPTLVYVQYMKFARRAEGIKSARSIFKKAREDVRSRYHIFVAAA 449
Query: 393 LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS--L 450
LM + KD ++A +FE GLKRF P Y++ Y D+LS LN+D N R LFER LSS L
Sbjct: 450 LMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMCYIDYLSHLNEDNNTRVLFERVLSSGGL 509
Query: 451 PPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGE-EGASALEDSLQDVVSRYS 509
P +S+EVW RF +FE GDL S +KVE+RR E EG + +V RY
Sbjct: 510 SPHKSVEVWNRFLEFESNIGDLSSIVKVERRRSAVFENLKEYEGKETAQ-----LVDRYK 564
Query: 510 FMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIY 569
F+DL+PC+S +L + E V I KV A S G V+ ++S + +
Sbjct: 565 FLDLYPCTSTELKSIGYAE-NVGIILNKVGGGAQSQNTGEVE-------TDSEATPPLPR 616
Query: 570 PDTSQMVIYDPRQKPGIGISPSTTATGASSALNALSNPMVATGGGGIMNPFDEMLKAASP 629
PD SQM+ + PR G P GG P P
Sbjct: 617 PDFSQMIPFKPRPCAHPGAHP--------------------LAGGVFPQP---------P 647
Query: 630 AIFAFLANLP---AVEGPTPNVDIVLSICLQSDIPTGQMGKSPTTYPTPIPTGAARSASG 686
A+ A A LP + GP +V+++ I ++ ++P + +P A+S
Sbjct: 648 ALAALCATLPPPNSFRGPFVSVELLFDIFMRLNLPDSAPQPNGDNELSPKIFDLAKSVHW 707
Query: 687 ISGSNKSHPTPSGSSLKQSKDKQSLKRKDI--GQDDDETTTVQSQPQPRDFFRIRQMKK 743
I T + + ++ S +R+ + G DD + + P D +R+RQ+K+
Sbjct: 708 IVD------TSTYTGVQHSVTAVPPRRRRLLPGGDDSDDELQTAVPPSHDIYRLRQLKR 760
>sp|O14233|RNA14_SCHPO mRNA 3'-end-processing protein rna14 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rna14 PE=3 SV=1
Length = 733
Score = 274 bits (701), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/477 (31%), Positives = 251/477 (52%), Gaps = 40/477 (8%)
Query: 45 YEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYE 104
YEQ+L FP + W Y+ + +A N+ A + LFSRCL+ L V LW Y+ +IR++
Sbjct: 94 YEQMLRPFPYVPRVWVDYISSELAFNDFHAVELLFSRCLVKVLSVDLWTLYLSYIRRINP 153
Query: 105 KKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAY 164
+ + +A++F+++ +G DI SGPIW E++ FL+S PA + E+ Q++ +R+ Y
Sbjct: 154 DGEGQSRSTITQAYEFVINTIGVDILSGPIWSEFVDFLRSGPANSTWEQQQKLDHVRRIY 213
Query: 165 QRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDW 224
QRA+ TP H++E+LW+DY+ FENSV+R A+ ++E Y +ARA RE E +
Sbjct: 214 QRAITTPIHNIEKLWRDYDAFENSVNRATARKFVAEKSPVYMAARAAMRELSNLTEGLRV 273
Query: 225 NMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASS-NKRIIFTYEQCLMYLYHYPD 283
+ E + W + +E+ +P + + RI + +EQ ++Y+ P
Sbjct: 274 YDFTFERKYTKVERIAYSRWMNWIKWEQSDPLDLQHGTMLQNRIAYAFEQAMLYVPLCPQ 333
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343
IW D ++ A++ +R ++ P + +L +AE EE+ + + YESL+
Sbjct: 334 IWLDGFSYFLSISDEQRALQTIRRGMRYCPSNFVLHVRYAEHEEANNRTSEIRSTYESLI 393
Query: 344 ---------------------TDS------------------VNTTALAHIQFIRFLRRT 364
TD V +LA I +RRT
Sbjct: 394 AALAREISQLDSKASSSSESSTDGNPQEKKLPEHLVKRKSRLVRQYSLAWCCLINAIRRT 453
Query: 365 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424
EGV+AAR F ARK+P ++ +Y+A A+M +DP +A +FE G++ F PAY+
Sbjct: 454 EGVKAARAIFTKARKAPYQSHEIYIASAMMEHHCSRDPVIASRIFELGMRHFGDVPAYVY 513
Query: 425 EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQR 481
+Y +L +ND+ N RALFE+A+ + +E+ +++++ +E YGDL++ + + QR
Sbjct: 514 KYLSYLIAINDETNARALFEKAIPRIAADEAKPIYQKWLDYESNYGDLNAAIALSQR 570
>sp|Q6C8L8|RNA14_YARLI mRNA 3'-end-processing protein RNA14 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RNA14 PE=3 SV=1
Length = 806
Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 247/479 (51%), Gaps = 47/479 (9%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVY 103
IYE+ L+++P +A+ W +Y+ M +QLF RCL + LW Y+ ++R+V
Sbjct: 229 IYERFLALYPLSAEIWIEYITLEMDNGEFKRLEQLFGRCLTRLPNLKLWNIYLTYVRRVN 288
Query: 104 -----EKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMI 158
K TE + KAF+F L HVG D SG +W EY+ F+KS PA EE Q+
Sbjct: 289 VLSSESDKITEARTNIIKAFEFYLDHVGIDRESGNVWFEYLDFIKSKPATTTWEEQQKND 348
Query: 159 AIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKY 218
RK Y++A+ P +++ LW Y NFE S+++ A+ ++E +AR
Sbjct: 349 LTRKIYRKAIGIPLNNLSILWTAYTNFEYSLNKATARKFINEKSGSCQNARQ-------- 400
Query: 219 CEEIDWNML------AVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDT-ASSNKRIIFTY 271
C+ + N++ +VP +G ++E Q AWK+ + +EK NP D A +NKR+++
Sbjct: 401 CQTVLENLMRGLDRSSVPKSGP-RDEFQVRAWKKWIDWEKSNPLGTDNKAETNKRLLYCL 459
Query: 272 EQCLMYLYHYPDIWYDYATWNAKSGSIDA-AIKVFQRALKALPDSEMLRYAFAELEESRG 330
+Q +M L P+IW+ A + + A++ + L P+S +L + AE E
Sbjct: 460 KQAVMSLQFVPEIWFLAAEYCFDDPLLKTEALQFLKDGLSLNPNSSLLAFRLAEYYEREA 519
Query: 331 AIAAAKKLY----ESLLTD--------------------SVNT-TALAHIQFIRFLRRTE 365
+ +Y ESL + +NT ++A+ ++ ++R E
Sbjct: 520 DAEKMRTIYDEHIESLGKERQALIEAQGDPEAEPTAEIIKLNTQISIAYSVCMKAVKRFE 579
Query: 366 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILE 425
G++ R F AR + TYH+YVA ALM F +K+P +A NVFE GLK AY+
Sbjct: 580 GIKPGRMVFKKARNTGFATYHIYVASALMEFHHNKNPTVATNVFELGLKYCGSNAAYVQH 639
Query: 426 YADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484
Y DFL L+DD N RALFE+ + L P ++ + K +FE +G++ S +K++ R ++
Sbjct: 640 YLDFLISLHDDTNARALFEKTIPLLGPSDAASLIKSMIKFESDFGEITSVVKLQDRLRQ 698
>sp|P0CO12|RNA14_CRYNJ mRNA 3'-end-processing protein RNA14 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RNA14 PE=3 SV=1
Length = 1064
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 145/522 (27%), Positives = 235/522 (45%), Gaps = 90/522 (17%)
Query: 53 PTAAKFWKQYVEAYMAVNNDDATKQLFSRCL------LICLQVPLWRCYIRFIRKVYEKK 106
PTAA+ + +A++N + +F+ L V +W Y+ +IR+ +
Sbjct: 310 PTAAQPLLALINLELALSNFAEVEAIFASTLKGSAGITTAADVSIWAAYLHYIRR--QNP 367
Query: 107 GTEG-------QEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIA 159
TEG + +A++F L G D SG IW EYI F+ S PA N + +
Sbjct: 368 LTEGSANAADVRSTITEAYEFALRECGFDRESGDIWDEYIKFVASGPATNQWDTQAKNDN 427
Query: 160 IRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYC 219
+RK YQRAV P +++E LWK Y+NFE+S+++ AK L+E Y +AR RE +
Sbjct: 428 LRKIYQRAVCIPLNNIEALWKSYDNFESSLNKLTAKKYLAEKSPAYMTARTALRELRALS 487
Query: 220 EEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTAS-SNKRIIFTYEQCLMYL 278
+ I +L PT + ++ Q AWK L +E+GNP I+ RI + +CL +
Sbjct: 488 DPIPKPILPPYPTFTEQDRQVVGAWKACLRWEEGNPLVIENHELLQSRIGYALRKCLGEM 547
Query: 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKL 338
H+P++W+ A++ +K G D A ++ + + A P S +L +A+AEL+E R A L
Sbjct: 548 RHFPELWHYAASYYSKLGKQDEAAEILEAGVNACPKSFLLTFAYAELQEERKAFPTCHSL 607
Query: 339 YESLLT--------------------------------------DSVNTTA--LAHIQFI 358
Y +L++ DS++ ++ IQ +
Sbjct: 608 YTTLISKLNPEVDELRQNVAREIDIARGPPIPGSEKAAVAAAVGDSIDADGNDISDIQRL 667
Query: 359 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD-------------KDPKLA 405
R G A++ D + V++ Y A + K P L
Sbjct: 668 VEEREQRGALVAQRRGKDIEELMVGISVVWIMYMRFARRAEGIKAARGVFGKARKSPHLT 727
Query: 406 HNVFEA---------------------GLKRFMHEPAYILEYADFLSRLNDDRNIRALFE 444
VFEA GLK+F + Y+++Y FL +NDD N RALFE
Sbjct: 728 WQVFEASALMEYHTNKDAAVAIRIFELGLKQFSEDVDYVIKYLQFLLSINDDNNARALFE 787
Query: 445 RALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486
R++ + +++ +W + ++E YGDL + K+E R E
Sbjct: 788 RSVVRIMGDKARPLWDAWARYEYTYGDLSAVHKLEARMSEVF 829
>sp|P0CO13|RNA14_CRYNB mRNA 3'-end-processing protein RNA14 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=RNA14
PE=3 SV=1
Length = 1064
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 145/522 (27%), Positives = 235/522 (45%), Gaps = 90/522 (17%)
Query: 53 PTAAKFWKQYVEAYMAVNNDDATKQLFSRCL------LICLQVPLWRCYIRFIRKVYEKK 106
PTAA+ + +A++N + +F+ L V +W Y+ +IR+ +
Sbjct: 310 PTAAQPLLALINLELALSNFAEVEAIFASTLKGSAGITTAADVSIWAAYLHYIRR--QNP 367
Query: 107 GTEG-------QEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIA 159
TEG + +A++F L G D SG IW EYI F+ S PA N + +
Sbjct: 368 LTEGSANAADVRSTITEAYEFALRECGFDRESGDIWDEYIKFVASGPATNQWDTQAKNDN 427
Query: 160 IRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYC 219
+RK YQRAV P +++E LWK Y+NFE+S+++ AK L+E Y +AR RE +
Sbjct: 428 LRKIYQRAVCIPLNNIEALWKSYDNFESSLNKLTAKKYLAEKSPAYMTARTALRELRALS 487
Query: 220 EEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTAS-SNKRIIFTYEQCLMYL 278
+ I +L PT + ++ Q AWK L +E+GNP I+ RI + +CL +
Sbjct: 488 DPIPKPILPPYPTFTEQDRQVVGAWKACLRWEEGNPLVIENHELLQSRIGYALRKCLGEM 547
Query: 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKL 338
H+P++W+ A++ +K G D A ++ + + A P S +L +A+AEL+E R A L
Sbjct: 548 RHFPELWHYAASYYSKLGKQDEAAEILEAGVNACPKSFLLTFAYAELQEERKAFPTCHSL 607
Query: 339 YESLLT--------------------------------------DSVNTTA--LAHIQFI 358
Y +L++ DS++ ++ IQ +
Sbjct: 608 YTTLISKLNPEVDELRQNVAREIDIARGPPIPGSEKAAVAAAVGDSIDADGNDISDIQRL 667
Query: 359 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD-------------KDPKLA 405
R G A++ D + V++ Y A + K P L
Sbjct: 668 VEEREQRGALVAQRRGKDIEELMVGISVVWIMYMRFARRAEGIKAARGVFGKARKSPHLT 727
Query: 406 HNVFEA---------------------GLKRFMHEPAYILEYADFLSRLNDDRNIRALFE 444
VFEA GLK+F + Y+++Y FL +NDD N RALFE
Sbjct: 728 WQVFEASALMEYHTNKDAAVAIRIFELGLKQFSEDVDYVIKYLQFLLSINDDNNARALFE 787
Query: 445 RALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486
R++ + +++ +W + ++E YGDL + K+E R E
Sbjct: 788 RSVVRIMGDKARPLWDAWARYEYTYGDLSAVHKLEARMSEVF 829
>sp|Q4PCV8|RNA14_USTMA mRNA 3'-end-processing protein RNA14 OS=Ustilago maydis (strain 521
/ FGSC 9021) GN=RNA14 PE=3 SV=1
Length = 945
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 166/326 (50%), Gaps = 26/326 (7%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVY 103
+Y++ VFP A+ W Y++ +A +N + +F++CL V LW+ Y+ + R+V
Sbjct: 214 LYDRFFKVFPNQARQWLAYLDLELAHSNFAQVEAIFNQCLRTTPSVDLWKFYLSYTRRVN 273
Query: 104 EKKGTEGQEE------TRK----AFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEE 153
+ G EE TR+ A++F L +G+D SG IW +YI +K A +E
Sbjct: 274 PLAPSTGAEEDPAREQTRRVLEGAYEFALRFIGNDKDSGSIWTDYILLIKEREARGGWKE 333
Query: 154 SQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYR 213
Q+M +R+ YQRAV P ++E +WKDY+ +EN +++ AK L+E Y +AR V R
Sbjct: 334 GQKMDDLRRVYQRAVSVPLTNIETIWKDYDAYENGLNKLTAKKFLAERSPAYMTARRVLR 393
Query: 214 ERKKYCEEIDWNML---------------AVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI 258
+ K Y + + +L A P +E QQ AW L +E+ NP +
Sbjct: 394 DLKAYSDPLVKPLLPRVPVWTTSALAGDAAQDPAQWQRERQQADAWIEYLKWEESNPLLL 453
Query: 259 -DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEM 317
D A R+ Y + MYL YP++WY + + +D A + ++A P S +
Sbjct: 454 EDVAILQARVTSAYRRATMYLRFYPEVWYLASRYLVSILRVDEAATWLKNGMEACPGSFL 513
Query: 318 LRYAFAELEESRGAIAAAKKLYESLL 343
L +A+AEL E+R + + +++ LL
Sbjct: 514 LHFAYAELGEARKSTSDCAAVFDGLL 539
Score = 126 bits (317), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 22/230 (9%)
Query: 292 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA 351
N G +D + +R KA E+L+ EL+ AAAK E L +A
Sbjct: 577 NEGDGDVDVDGEERERERKA---GELLQIRKQELQ------AAAKPEIEGL----KEASA 623
Query: 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEA 411
L I+++ FLRRTEG+ AR F ARKSP+ T+ V+ A ALM + KD +A VFE
Sbjct: 624 LVWIKYMHFLRRTEGIRPARSVFSRARKSPHCTWQVFEASALMEYHCSKDAVVATKVFEL 683
Query: 412 GLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGD 471
LK F + A+++ Y DFL +NDD N RALFER + + PE + +W+R+ ++E +GD
Sbjct: 684 ALKTFGSDEAFVVRYLDFLISMNDDSNARALFERVIGTFAPERARPIWERWAKYEYNFGD 743
Query: 472 LDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDL 521
+ K+E R E E + + ++R S+MDL +DL
Sbjct: 744 SVAIQKLESRLAETYPD---------EPATKRFIARSSYMDLDLVGPRDL 784
>sp|Q7S1Y0|RNA14_NEUCR mRNA 3'-end-processing protein rna-14 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rna-14 PE=3 SV=1
Length = 1167
Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 165/312 (52%), Gaps = 28/312 (8%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVY 103
+YE+ L++FP AA W +Y++ +++NN + +F++CL+ V LW Y+ +IR+
Sbjct: 285 VYERFLAIFPQAADIWVEYLDLELSLNNFPQAEGIFAKCLMTTPNVNLWTRYLDYIRRRN 344
Query: 104 EKKGTEGQ--EETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPAL---NAQEESQRMI 158
+ + GQ + +A++F++ ++G D SG IW EYI F+K P + ++ Q+M
Sbjct: 345 DLNDSTGQARQTVSQAYEFVIDNIGLDKDSGKIWAEYIQFIKFGPGTVGGSQWQDQQKMD 404
Query: 159 AIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKY 218
+RKAYQRA+ P +V LWK+Y+ FE +++ + LSE Y SA++ +
Sbjct: 405 QLRKAYQRAICVPISNVNTLWKEYDQFEMGLNKLTGRKYLSEKSPSYMSAKSANTALEHI 464
Query: 219 CEEID-WNMLAVPPTGSYKEEQQWIA----WKRLLTFEKGNPQRIDTASS-----NKRII 268
++ N+ +PP + +Q+++ WK+ + +EK +P + KRI+
Sbjct: 465 TRGLNRTNLPRLPPAPGFDGDQEFMEQVEIWKKWIAWEKSDPLDLKDDKDQPGLYQKRIL 524
Query: 269 FTYEQCLMYLYHYPDIWYDYATWN------------AKSGSIDAAIKVFQRALKALPDSE 316
+ Y Q LM L +P++W D A W K G+ + ++ R ++A P+S
Sbjct: 525 YVYNQALMALRFWPEMWVDAAQWCFDNNITTVENKVTKDGNAN-GVEFLIRGIEANPESV 583
Query: 317 MLRYAFAELEES 328
+L + A+ ES
Sbjct: 584 LLAFKHADHIES 595
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 329 RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG-------VEAARKYFLDARKSP 381
+ I A +K Y + + I IR +RR +G + RK F DAR
Sbjct: 669 KAPIEAIQKGYAAQTQLLSRMISFVWIALIRAMRRVQGKGGLNVPLGGMRKAFHDARARG 728
Query: 382 NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRA 441
T VY A A + + KDP +F+ G K F + + LE +L +D N R
Sbjct: 729 RLTSDVYAAVAQLEWTIYKDPA-GGKIFDRGAKLFPEDENFTLENIKYLHSRDDHTNARV 787
Query: 442 LFERALSSL--PPE---ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484
LFE ++ L PE ++ +++ F ++E +G+L K+E+R E
Sbjct: 788 LFETVVNRLTQKPELVHKAKPLYQYFHKYESQFGELAQVTKLEKRMAE 835
>sp|Q5B3I8|RNA14_EMENI mRNA 3'-end-processing protein rna14 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rna14 PE=3 SV=2
Length = 1075
Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 155/302 (51%), Gaps = 16/302 (5%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
+ A +YE+ L VFP +A+ W Y +N +Q+F+R LL V LW Y+
Sbjct: 272 IDSARDVYERFLKVFPLSAEMWVAYATMESELNELFRLEQIFNRTLLTIPAVQLWTVYLD 331
Query: 98 FIRKVYEKKGTEGQEETRK----AFDFMLSHVGSDISSGPIWLEYITFLKSLPAL---NA 150
++R+ T+ + RK A++ L H+G D SG IW +YI F++S P +
Sbjct: 332 YVRR-RNPLSTDTTGQARKVISSAYELALQHIGMDKESGSIWADYIQFIRSGPGNVGGSG 390
Query: 151 QEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARA 210
++ Q+M +RKAYQRA+ P V LWK+Y+ FE +++ + L E Y +AR+
Sbjct: 391 WQDQQKMDLLRKAYQRAICVPMQAVNTLWKEYDQFEMGLNKLTGRKFLQEQSPSYMTARS 450
Query: 211 VYRERKKYCEEIDWNMLA-VPPT----GSYKEEQQWIAWKRLLTFEKGNP---QRIDTAS 262
Y E + + +++ L +PP G ++ QQ WKR + +EKG+P + D +
Sbjct: 451 SYTELQNFTRDLNRTTLPRLPPVPGSEGDFEYLQQIEIWKRWINWEKGDPLVLKEDDLTA 510
Query: 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAF 322
R+++ Y+Q LM L P+IW++ A + + + + + A P+S +L +
Sbjct: 511 YKGRVVYVYKQALMALRFLPEIWFEAADFCFLNDMETEGNEFLKNGIDANPESCLLAFKR 570
Query: 323 AE 324
A+
Sbjct: 571 AD 572
>sp|Q6FU45|RNA14_CANGA mRNA 3'-end-processing protein RNA14 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RNA14 PE=3 SV=1
Length = 646
Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 129/513 (25%), Positives = 225/513 (43%), Gaps = 59/513 (11%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ---VPLWRCYIRFIR 100
+Y +L FP + W ++++ + N D ++L ++CL L+ + LW Y+ ++R
Sbjct: 54 LYAELHERFPLYSPLWTMHLQSELQRNEFDTVEKLLAQCLAGDLENNDLSLWSTYLDYVR 113
Query: 101 KVYEKKGTEGQEETR----KAFDFMLSHVGS-DISSGPIWLEYITFLKSLPALNAQEESQ 155
+ + G +E R KAF ++ + + + W +Y+ FL +N EE Q
Sbjct: 114 R--KNNLITGGQEARAVVIKAFKLVMDKCATFEPKASSFWNDYLGFLHQWKPMNKWEEQQ 171
Query: 156 RMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRER 215
R+ IR+ Y++ + P +E++W Y +E + A+ + E + Y AR++Y+E
Sbjct: 172 RLDMIREVYKKMLCVPFDKLEKMWNQYTLWEQETNTLTARKFIGELSADYMKARSIYQEL 231
Query: 216 KKYCEEI---------DWNMLAVP----PTGSYKEEQQWIAWKRLLTFEKGNPQRIDTAS 262
I N +P P + Q AW + + +EK N + +
Sbjct: 232 LNVTANIRRTSPLNLRTANKNNIPQYVLPCKK-NDHTQLEAWLKWIAWEKENKLELTEDA 290
Query: 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIK-VFQRALKALPDSEMLRYA 321
R+ + Y+Q + L P+IWYDY + + DAA K + + AL+A P S L +
Sbjct: 291 LKDRVTYVYKQAIQQLLFEPEIWYDYVMYEFDN---DAARKNILKVALQANPTSPTLTFK 347
Query: 322 FAELEESRGAIAAAKKLYESLL--------TDSVN------------TTALAHIQFIRFL 361
AE E + +E + D+ N T + ++ +
Sbjct: 348 LAECYEVENKSEEVQNCFEKTIDELLRQYKNDNGNDELSSDIIWERKTLTYIYCIYMNTM 407
Query: 362 RRTEGVEAARKYFLDARK-SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420
+R G+ AAR F RK T+ +YV A + F D K A V E GLK F +
Sbjct: 408 KRLSGLSAARAVFGKCRKLKKAMTHDIYVENAYLEFQNQNDHKTASKVLELGLKYFGDDG 467
Query: 421 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESI-EVWKRFTQFEQMYGDLDSTLKVE 479
YI +Y DFLS LN ++ LFE ++ + + +++ + +E YG+L++ ++E
Sbjct: 468 EYINKYMDFLSLLNRGSQMKTLFETSIEKVEDLRQLKKIYVKMIGYESKYGNLNNVYQLE 527
Query: 480 QRRKEALSRTGEEGASALEDSLQDVVSRYSFMD 512
+R E T D +Q +RY D
Sbjct: 528 KRFFEKFPDT---------DLIQLFSTRYKIQD 551
>sp|P25298|RNA14_YEAST mRNA 3'-end-processing protein RNA14 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RNA14 PE=1 SV=2
Length = 677
Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 137/573 (23%), Positives = 253/573 (44%), Gaps = 79/573 (13%)
Query: 39 AQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ---VPLWRCY 95
A+ +YEQ + FP + W ++ +A + + +++ ++CL L+ + LW Y
Sbjct: 59 AKVREVYEQFHNTFPFYSPAWTLQLKGELARDEFETVEKILAQCLSGKLENNDLSLWSTY 118
Query: 96 IRFIRKVYEKKGTEGQEETR----KAFDFMLSHVG-SDISSGPIWLEYITFLKSLPALNA 150
+ +IR+ + G +E R KAF ++ + S W EY+ FL+ N
Sbjct: 119 LDYIRR--KNNLITGGQEARAVIVKAFQLVMQKCAIFEPKSSSFWNEYLNFLEQWKPFNK 176
Query: 151 QEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARA 210
EE QR+ +R+ Y++ + P ++E++W Y +E ++ A+ + E ++Y AR+
Sbjct: 177 WEEQQRIDMLREFYKKMLCVPFDNLEKMWNRYTQWEQEINSLTARKFIGELSAEYMKARS 236
Query: 211 VYRERKKYCEEIDW---------NMLAVPPTGS----YKEEQQWIAWKRLLTFEKGNPQR 257
+Y+E + N +P G+ ++ Q W+ W + +E+ N
Sbjct: 237 LYQEWLNVTNGLKRASPINLRTANKKNIPQPGTSDSNIQQLQIWLNW---IKWERENKLM 293
Query: 258 IDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEM 317
+ ++RI + Y+Q + Y+ ++WYDY+ + +++ + AL A PDS
Sbjct: 294 LSEDMLSQRISYVYKQGIQYMIFSAEMWYDYSMYISENSDRQ---NILYTALLANPDSPS 350
Query: 318 LRYAFAELEE---------------SRGAIAAAKKL-------------YES-LLTDSVN 348
L + +E E ++ ++ KK+ YE LL
Sbjct: 351 LTFKLSECYELDNDSESVSNCFDKCTQTLLSQYKKIASDVNSGEDNNTEYEQELLYKQRE 410
Query: 349 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN-FTYHVYVAYALMAFCQDKDPKLAHN 407
++ ++R G+ AAR F RK T+ VYV A + F D K A
Sbjct: 411 KLTFVFCVYMNTMKRISGLSAARTVFGKCRKLKRILTHDVYVENAYLEFQNQNDYKTAFK 470
Query: 408 VFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESI-EVWKRFTQFE 466
V E GLK F ++ YI +Y DFL LN D I+ LFE ++ + + E++K+ +E
Sbjct: 471 VLELGLKYFQNDGVYINKYLDFLIFLNKDSQIKTLFETSVEKVQDLTQLKEIYKKMISYE 530
Query: 467 QMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVR 526
+G+L++ +E+R E + E+ ++ SRY + +L++
Sbjct: 531 SKFGNLNNVYSLEKRFFERFPQ---------ENLIEVFTSRYQIQN---------SNLIK 572
Query: 527 QEWLVKNINKKVDKSALSNGPGIVDKGPSGLTS 559
+ L N++ D S S+G G G ++S
Sbjct: 573 KLELTYMYNEEED-SYFSSGNGDGHHGSYNMSS 604
>sp|Q2UKV8|RNA14_ASPOR mRNA 3'-end-processing protein rna14 OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=rna14 PE=3 SV=1
Length = 1078
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 155/301 (51%), Gaps = 14/301 (4%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
+ A +YE+ L+ FP +A+ W Y +N +Q+F+R LL V LW Y+
Sbjct: 282 IDSAREVYERFLTAFPFSAEQWVAYATMESELNELYRLEQIFNRTLLTIPDVQLWTVYLD 341
Query: 98 FIRKVYE-KKGTEGQEE--TRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPAL---NAQ 151
++R+ T GQ A+D L +VG D SG IW +Y+ F++S P +
Sbjct: 342 YVRRRNPLTTDTTGQSRRIISSAYDLALQYVGVDKDSGSIWTDYVQFIRSGPGNVGGSGW 401
Query: 152 EESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAV 211
++ Q+M +RKAYQ+A+ PT V LWK+Y+ FE +++ + L E Y +AR+
Sbjct: 402 QDQQKMDLLRKAYQKAICVPTQAVNNLWKEYDQFEMGLNKLTGRKFLQEQSPAYMTARSS 461
Query: 212 YRERKKYCEEIDWNMLA-VPPT----GSYKEEQQWIAWKRLLTFEKGNP---QRIDTASS 263
Y E + +++ L +PP G + QQ WKR + +EKG+P + D A+
Sbjct: 462 YTELQNITRDLNRTTLPRLPPVLGSDGDIEFGQQVDIWKRWIKWEKGDPLVLKEEDQAAF 521
Query: 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFA 323
R+I+ Y+Q LM L P+IW++ A + + + + + ++A P+S +L + A
Sbjct: 522 KARVIYVYKQALMALRFLPEIWFEAAEFCFLNDMENEGNEFLKNGIEANPESCLLAFKRA 581
Query: 324 E 324
+
Sbjct: 582 D 582
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 349 TTALAHIQFIRFLRRTEG------VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDP 402
T + A I +R +RR +G + +R+ F DARK T VY+A AL+ + KDP
Sbjct: 684 TVSFAWIALMRAMRRIQGKGKPGEMPGSRQVFADARKRGRITSDVYIASALIEYHCYKDP 743
Query: 403 KLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFE---RALSSLPP--EESIE 457
A +FE G K F + + LEY L +ND N RA+FE R L+S P ++
Sbjct: 744 A-ATKIFERGAKLFPEDENFALEYLKHLIDINDVINARAVFEMTVRKLASNPENVHKTKP 802
Query: 458 VWKRFTQFEQMYGDLDSTLKVEQRRKE 484
++ ++E YGDL + +E R +E
Sbjct: 803 IFAFLHEYESRYGDLVQVINLENRMRE 829
>sp|Q759Y6|RNA14_ASHGO mRNA 3'-end-processing protein RNA14 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RNA14 PE=3 SV=1
Length = 661
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/483 (24%), Positives = 224/483 (46%), Gaps = 46/483 (9%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL---LICLQVPLWRC 94
VA+ ++ QL +FP + W ++ + + L ++CL L+ + LW
Sbjct: 69 VAEIREVFGQLHELFPLESFLWTIHLNWELEQEESGQVETLLAKCLSGELMNNDIYLWST 128
Query: 95 YIRFIRKVYEKKGTEGQEETR----KAFDFMLSHVGS-DISSGPIWLEYITFLKSLPALN 149
Y+ ++R+ + G EE R KA++ ++ + S W +Y+ FL+ ++
Sbjct: 129 YLGYVRR--KNNTVTGGEEARGTVLKAYELVMEKCAVFEPRSMQFWQDYLQFLEQWKPVS 186
Query: 150 AQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSAR 209
EE R+ +RK Y+R + P +E+ W+ Y +E V++ A+ + E + Y +AR
Sbjct: 187 KWEEQSRVEILRKLYKRLLCLPVESLERYWEKYTQWEQEVNQLTARKFIGELSASYMNAR 246
Query: 210 AVYRERKKYCEEIDWNM---------LAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDT 260
++Y+E + + ++ +P G Y E Q I W + + +E N +
Sbjct: 247 SLYQEWSNLTKGLRRSLPTKLNQATQQNLPAPGQYDEYQLQI-WTKWIQWELDNKLDLPE 305
Query: 261 ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRY 320
+R+ + + Q + ++ P+IWY+YA + + + KV + A++ P S L +
Sbjct: 306 VVLRQRVEYVHRQAVQHMCFAPEIWYNYAMFVDE----NEHEKVLEIAVRCNPGSLSLTF 361
Query: 321 AFAELEESRGAIAAAKKLYE------SLLTDSVNTTAL--------------AHIQFIRF 360
AE E I A ++ ++ S+ +N T + A+ ++
Sbjct: 362 KLAEYLELNNKIEALEERFQHCIARISMELQVMNDTTMDPDKILRQTRKLTFAYCVYMTT 421
Query: 361 LRRTEGVEAARKYFLDARK-SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 419
++R G+ AARK F RK + +Y +YV A M + + D V E GLK F
Sbjct: 422 MKRVTGLSAARKVFSKCRKLKKDISYEIYVENAYMEYYNNSDVTTPCRVLEFGLKYFQDN 481
Query: 420 PAYILEYADFLSRLNDDRNIRALFERALSSLPPEESI-EVWKRFTQFEQMYGDLDSTLKV 478
YI +Y DFL + D I++LFE + + + + E++K+ +E +G+L++ ++
Sbjct: 482 GNYINKYLDFLILVKQDAQIKSLFESCIDKIYNLDQLKEIYKKVINYESKFGNLNNVYEL 541
Query: 479 EQR 481
E+R
Sbjct: 542 ERR 544
>sp|Q4WXX4|RNA14_ASPFU mRNA 3'-end-processing protein rna14 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=rna14 PE=3 SV=1
Length = 1029
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 153/295 (51%), Gaps = 14/295 (4%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVY 103
++E+ L VFP AA+ W Y + +N+ +Q+F+R LL V LW Y+ ++R+
Sbjct: 289 VFERFLKVFPFAAEQWVAYAKMESELNDLYRLEQIFNRTLLTIPDVQLWSVYLDYVRRRN 348
Query: 104 E-KKGTEGQEE--TRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPAL---NAQEESQRM 157
T GQ A++ H+G D SG IW +Y+ F+KS P + ++ Q+M
Sbjct: 349 PLTTDTTGQARRIISSAYELAFQHIGVDKDSGSIWSDYVQFIKSGPGNVGGSGWQDQQKM 408
Query: 158 IAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKK 217
+RKAYQ+A+ PT V LWK+Y+ FE +++ + L E Y +AR+ Y E +
Sbjct: 409 DLLRKAYQKAICVPTQAVNTLWKEYDQFEMGLNKLTGRKFLQEQSPAYMTARSSYTELQN 468
Query: 218 YCEEIDWNMLA-VPPT----GSYKEEQQWIAWKRLLTFEKGNP---QRIDTASSNKRIIF 269
++ L +PP G + QQ WKR + +EKG+P + D A+ R+++
Sbjct: 469 ITRDLIRTTLPRLPPVPGSDGDIEFTQQVDIWKRWIKWEKGDPLVLKEEDPAAFKGRVVY 528
Query: 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAE 324
Y+Q LM L P++W+D A + + + ++ ++A P+S +L + A+
Sbjct: 529 VYKQALMALRFLPEMWFDAAEFCFLNDLESEGNEFLKQGMEANPESCLLAFKRAD 583
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 332 IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG------VEAARKYFLDARKSPNFTY 385
I A +K + + T + A I +R +RR +G +R+ F DARK T
Sbjct: 668 IDAVRKAHAIQIGILSKTISFAWIALMRAMRRIQGKGKPGETPGSRQVFADARKRGRITS 727
Query: 386 HVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFE- 444
VY+A AL+ + KDP A +FE G K F + + LEY L +ND N RA+FE
Sbjct: 728 DVYIASALIEYHCYKDPA-ATKIFERGAKLFPDDENFALEYLKHLIDINDIINARAVFEM 786
Query: 445 --RALSSLPP--EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484
R L+S P ++ ++ ++E YGDL + +E R +E
Sbjct: 787 TVRKLASNPDNVHKTKPIFAFLHEYESRYGDLVQVINLENRMRE 830
>sp|Q4IR09|RNA14_GIBZE mRNA 3'-end-processing protein RNA14 OS=Gibberella zeae (strain
PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RNA14
PE=3 SV=1
Length = 997
Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 144/279 (51%), Gaps = 14/279 (5%)
Query: 27 EILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 86
E++A+ P+ +A Y + + +FP AA W +++E + NN +QLF RCL+
Sbjct: 185 ELIASHRDFSPLEKARSTYNRFVEIFPQAADKWVEWIELELKYNNFVEVEQLFGRCLMQV 244
Query: 87 LQVPLWRCYIRFIRK---VYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLK 143
V LW Y+ +IR+ + + + ++++F++ ++G D SG IW +Y+ F+K
Sbjct: 245 PNVKLWTVYLDYIRRRNDLNNDPSGQARRTVTQSYEFVIDNIGVDRDSGNIWQQYVQFVK 304
Query: 144 SLPAL---NAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
+ P ++ Q+M +R Y+RAV P V LWK+Y+ FE +++ + + E
Sbjct: 305 NGPGQIDGTDWQDRQKMDQLRGIYRRAVAVPMSTVNNLWKEYDQFEMGLNKMTGRKFIQE 364
Query: 201 YQSKYTSARAVYRERKKYCEEID-WNMLAVPPTGSYKEEQQWI----AWKRLLTFEKGNP 255
Y SA++ +D N+ +PP + +Q++ WK+ + +EK +P
Sbjct: 365 RSPVYMSAKSANIALDNITRHLDRTNLPRLPPAPGFNGDQEFRDQVEMWKKWIAWEKEDP 424
Query: 256 ---QRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW 291
+ + + N+R++ Y+Q LM L +P+IW D A W
Sbjct: 425 LVLKSDEPKAYNQRVLHVYKQALMALRFWPEIWVDAAEW 463
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 11/163 (6%)
Query: 332 IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAA-----RKYFLDARKSPNFTYH 386
I A +K Y + T + I R +RR +G + RK F DAR+ T
Sbjct: 582 ILAIQKGYAAETQLLSRTISYVWIALARAMRRIQGKGSQAEGGLRKVFTDARQKGRLTSD 641
Query: 387 VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERA 446
VYVA AL+ KDP + +FE G + F ++ +++EY +L +D N R +FE
Sbjct: 642 VYVAVALLESVVYKDP-VGAKIFERGARLFPNDEMFMIEYLKYLHSKDDTTNARVVFETC 700
Query: 447 LSSL--PPE---ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484
++ L P+ ++ ++ F ++E YG+L K+E R E
Sbjct: 701 INRLVSNPDTLAKAKLLYAYFHKYESQYGELSQISKLEDRMAE 743
>sp|Q6CII8|RNA14_KLULA mRNA 3'-end-processing protein RNA14 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=RNA14 PE=1 SV=1
Length = 661
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 126/539 (23%), Positives = 240/539 (44%), Gaps = 59/539 (10%)
Query: 35 HLPVAQAAPIYE---QLLSVFPTAAKFWKQYVE-AYMAVNNDDA--TKQLFSRCLLICL- 87
H+ + Q +YE +L FP A W + + + DA + + +RCL L
Sbjct: 58 HVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELG 117
Query: 88 --QVPLWRCYIRFIRKVYEKKGTEGQEETR----KAFDFMLSHVGS-DISSGPIWLEYIT 140
+ LW YI ++RK + G EE R +AF ++ + S W EY+
Sbjct: 118 NNDLSLWLSYITYVRK--KNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH 175
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FL+ +N EE QR+ IRK Y+ + P +E +W+ Y +E V++ A+ + E
Sbjct: 176 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE 235
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNM---------LAVPPTGSYKEEQQWIAWKRLLTFE 251
++Y +AR++Y++ + + N+ +P Y + QQ + W + +E
Sbjct: 236 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY-DVQQLLIWLEWIRWE 294
Query: 252 KGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI-KVFQRALK 310
N + R+ + Y Q ++ P+IW++ A + + + I K + +
Sbjct: 295 SDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 354
Query: 311 ALPDSEMLRYAFAELEESRGAIAAAKKLYESLL------------TDSVNTTALAHIQ-- 356
+P+S +L ++ +E E I + S + D N +A+ ++
Sbjct: 355 CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 414
Query: 357 -------FIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNV 408
++ ++R +G+ A+RK F R+ T +Y+ A + + KD K A V
Sbjct: 415 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKV 474
Query: 409 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIE-VWKRFTQFEQ 467
E GLK F + YI +Y DFL +N++ +++LFE ++ + ++ ++++ FE
Sbjct: 475 LELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 534
Query: 468 MYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVR 526
G L+S +E+R E + L++ ++Y +D+ +LD++VR
Sbjct: 535 KVGSLNSVRTLEKRFFEKFPEVNK---------LEEFTNKYKVLDVNYLQRLELDYMVR 584
>sp|Q6BJD8|RNA14_DEBHA mRNA 3'-end-processing protein RNA14 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=RNA14 PE=3 SV=2
Length = 740
Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 155/318 (48%), Gaps = 19/318 (5%)
Query: 40 QAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFI 99
Q ++ + L++F W Y+ + +QLFS+CL I V L R Y+ ++
Sbjct: 52 QVKSVFNKYLNIFNFDQ--WCNYINYQLNRGEFQEVEQLFSKCLPITDHVELCRLYVSYV 109
Query: 100 RKVYEKKGTEGQEETR----KAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQ 155
R+ + G E+ R +AF+F ++ VG DISSG +W +Y+ FLK+ E+ Q
Sbjct: 110 RRTND--VITGGEKARGIVVQAFEFAVTKVGIDISSGDLWNDYLDFLKAWTPAATWEQQQ 167
Query: 156 RMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRER 215
+ IR+ Y+R +V PT +EQ+W Y +EN V+ A ++E S++ AR+ E
Sbjct: 168 KTDLIRRVYKRFLVIPTEKIEQVWSTYTKWENEVNASSANKFIAEKSSEFMDARSWNTEW 227
Query: 216 KKYCEEIDWNMLAVPPTGSYKEEQQWI-----AWKRLLTFEKGNPQRI-DTASSNKRIIF 269
E V P G + + + W + + E+ N + D +S +RI +
Sbjct: 228 HNATERSL--RREVIPIGIHNDNNNLVHTQLQLWYKWIALERENKLNLKDDSSVQQRIEY 285
Query: 270 TYEQCLMYLYHYPDIWYDYATWNAKSG---SIDAAIKVFQRALKALPDSEMLRYAFAELE 326
Y+Q +M L P++W+ + + +S + + I++ AL P S +L + +E+
Sbjct: 286 VYKQAIMALPFVPELWFKFNKFWLRSNEEANSNKCIELLNEALVLNPRSYLLTFQLSEMY 345
Query: 327 ESRGAIAAAKKLYESLLT 344
E I A + Y++L+T
Sbjct: 346 EKDNTINKATETYDNLIT 363
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 351 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT---YHVYVAYALMAFCQDKDPKLAHN 407
L + + + +R+ G++ AR F AR NF Y YV ALM + D + K A
Sbjct: 445 TLVYTKLMMACKRSRGIKEARGVFKQARN--NFEAIGYEFYVENALMEYHSD-NLKTASK 501
Query: 408 VFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIE 457
+FE G+K F + ++L Y DFL +N +I+ LFE+ L++L + +IE
Sbjct: 502 IFELGMKHFKKQGEFLLAYLDFLIMINKGESIKVLFEQGLTALLQDVNIE 551
>sp|Q5AM44|RNA14_CANAL mRNA 3'-end-processing protein RNA14 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=RNA14 PE=3 SV=1
Length = 791
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 155/314 (49%), Gaps = 13/314 (4%)
Query: 40 QAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFI 99
Q +++ L +F W +Y++ + + + + LF +CL I V L R Y+ ++
Sbjct: 48 QVRNTFDKYLKIFKFDGASWCKYIKYELNRDEKEKVENLFQQCLGITDNVELCRLYVDYV 107
Query: 100 RKV--YEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRM 157
R V + G + + +AF+F ++ VG DI+S +W +YI FL+S E+ Q++
Sbjct: 108 RGVTDFVTGGEKARGVVVQAFEFAINKVGIDITSESLWQDYIQFLQSWNPNANWEQQQKI 167
Query: 158 IAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKK 217
IRK Y++ + PT ++E W Y +EN ++ A +SE ++ AR+ E +
Sbjct: 168 DLIRKVYKKFLTIPTENIEVSWSQYTKWENELNPATASKFISEKSGEFMLARSWNTEFNR 227
Query: 218 YCEEIDWNMLAVPPTGSYKEE---QQWIAWKRLLTFEKGNPQRI-DTASSNKRIIFTYEQ 273
D ++ G + +E +Q W R L EK N + D ++KRI + Y+Q
Sbjct: 228 IT---DKSLKRNLNPGDHNDEDVVKQLKYWLRWLELEKENKLELKDETVNDKRIQYVYKQ 284
Query: 274 CLMYLYHYPDIWYDYATW---NAKSGSIDAAIKVFQRALKAL-PDSEMLRYAFAELEESR 329
L P+IW+ Y + + G++ +I++ + AL P S +L + AEL E
Sbjct: 285 ATYALPFVPEIWFQYVKYLLVQNEEGNLQESIRLLKEGGLALNPKSMLLTFQLAELYERD 344
Query: 330 GAIAAAKKLYESLL 343
+ AK ++++LL
Sbjct: 345 NSFNNAKIVFKNLL 358
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 329 RGAIAAAKKLY-----ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF 383
R ++A +K+L + L+D++ L +++ + +R+EG++ AR F ARK +
Sbjct: 458 RISLADSKQLLSFENEQKRLSDAI---TLTYVKSMIASKRSEGIKEARNVFKQARKFTDI 514
Query: 384 TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALF 443
Y +++ AL+ DK A +F+ G K F ++L Y D+L +ND +R +
Sbjct: 515 GYQIFIESALLEHYSDK-KSTALKIFDLGKKNFATNGKFLLNYLDYLIMINDVDTMRTVI 573
Query: 444 ERALSSLPPE 453
+ + ++ E
Sbjct: 574 QSSDANFTKE 583
>sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3
Length = 669
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 120/537 (22%), Positives = 212/537 (39%), Gaps = 101/537 (18%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWR 93
HL A+ A +++ +P +WK+Y + +N + +++ R L I L V LW
Sbjct: 110 HLMAARKA--FDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWI 167
Query: 94 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEE 153
YI F+++ + E R F+ + G+D S +W YI N + E
Sbjct: 168 HYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYI---------NWENE 218
Query: 154 SQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG------------- 196
+ + Y R + PT HH ++ E+ +N++ R L G
Sbjct: 219 QGNLREVTAIYDRILGIPTQLYSHHFQRF---KEHVQNNLPRDLLTGEQFIQLRRELASV 275
Query: 197 --------------------------LLSEYQSKYTSARAVYRERKKYCEE--------- 221
L++E ++ +++E Y E
Sbjct: 276 NGHSGDDGPPGDDLPSGIEDITDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFE 335
Query: 222 --IDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLY 279
I V P E+ Q WK L FE N +++R++ +E+C++
Sbjct: 336 EGIKRPYFHVKPL----EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCA 384
Query: 280 HYPDIWYDYATWNAKSGSIDAAIKVFQRALK-ALPDSEMLRYAFAELEESRGAIAAAKKL 338
Y + W YA + ++ SI+ VF RA LP M+ +A EE +G I A+ +
Sbjct: 385 LYEEFWIKYAKY-MENHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNI 443
Query: 339 YESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMA 395
++ + V A+ ++ + RR +E A DA KS N + V A
Sbjct: 444 LKT-FEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHL 502
Query: 396 F-CQDKDPKLAHNVFEAGLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SS 449
F Q PK + EA + + Y+ +EY+ L + ++ NI F++A+ S
Sbjct: 503 FKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQ--NEENILNCFDKAVHGS 560
Query: 450 LPPEESIEVWKRFTQFEQMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 499
LP + I +R +F + +G D++ L + +++L R E G+ E+
Sbjct: 561 LPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEE 617
>sp|Q8K2Z2|PRP39_MOUSE Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3
Length = 665
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 119/536 (22%), Positives = 209/536 (38%), Gaps = 99/536 (18%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWR 93
HL A+ A +++ +P +WK+Y + +N + +++ R L I L V LW
Sbjct: 108 HLMAARKA--FDKFFVHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWI 165
Query: 94 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEE 153
YI F+++ E E R F+ + G+D S +W YI N + E
Sbjct: 166 HYINFLKETLEPGDQETNTTIRGTFEHAVLAAGTDFRSDKLWEMYI---------NWENE 216
Query: 154 SQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG------------- 196
+ + Y R + PT HH ++ E+ +N++ R L G
Sbjct: 217 QGNLREVTAVYDRILGIPTQLYSHHFQRF---KEHVQNNLPRDLLTGEQFIQLRRELASV 273
Query: 197 -------------------------LLSEYQSKYTSARAVYRERKKYCEE---------- 221
L++E ++ +++E Y E
Sbjct: 274 NGHSGDDGPPGDDLPSGIEDISPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEE 333
Query: 222 -IDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYH 280
I V P + ++ W K L FE N +++R++ +E+C++
Sbjct: 334 GIKRPYFHVKPLEKAQPKKNW---KEYLEFEIEN-------GTHERVVVLFERCVISCAL 383
Query: 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLY 339
Y + W YA + ++ SI+ VF RA LP M +A EE +G I A+ +
Sbjct: 384 YEEFWIKYAKY-MENHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIIL 442
Query: 340 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAF 396
+ + V A+ ++ + RR +E A DA KS N + + A F
Sbjct: 443 RT-FEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIKNAKSNNESSFYAIKLARHLF 501
Query: 397 -CQDKDPKLAHNVFEAGLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SSL 450
Q PK + EA K + Y+ +EY+ L + ++ NI F++A+ SL
Sbjct: 502 KIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEMEYSCDLKQ--NEENILNCFDKAIHGSL 559
Query: 451 PPEESIEVWKRFTQFEQMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 499
P + I +R +F + +G D++ L + ++ L R E G+ E+
Sbjct: 560 PIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDTLKRKAENGSEEPEE 615
>sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp39 PE=3 SV=1
Length = 612
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 142/345 (41%), Gaps = 67/345 (19%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLL-ICLQVPLWRCYIRFIRKV 102
+Y++ L +P +WK+Y + V +A++ ++ R + I V LW Y F
Sbjct: 60 VYDRFLGKYPLLFGYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLWTNYCAF---- 115
Query: 103 YEKKGTEGQ-EETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIR 161
K T G E R+ F + VG D S P W +Y+ F +E +R +
Sbjct: 116 --KMETNGDANEVRELFMQGANMVGLDFLSHPFWDKYLEF---------EERQERPDNVF 164
Query: 162 KAYQRAVVTPTHHVEQLWKDYENFENS------------------VSRQLAKGLLSEYQS 203
+ +R + P H + ++ + S V+R+ AK ++S
Sbjct: 165 QLLERLIHIPLHQYARYFERFVQVSQSQPIQQLLPPDVLASIRADVTREPAK-VVSAGSK 223
Query: 204 KYTSARA---VYRERKKYCEEIDWNMLAVPPTGSYK------------------EEQQWI 242
+ T R + RE + I + + K +E Q +
Sbjct: 224 QITVERGELEIEREMRARIYNIHLQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLV 283
Query: 243 AWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW-NAKSGSIDAA 301
W++ L FE + +RI YE+CL+ Y + W+ YA W +A+ ++
Sbjct: 284 NWRKYLDFE-------EVEGDFQRICHLYERCLITCALYDEFWFRYARWMSAQPDHLNDV 336
Query: 302 IKVFQRA--LKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 344
+++RA + A +R +A EES+G IA+AK +Y+S+LT
Sbjct: 337 SIIYERASCIFASISRPGIRVQYALFEESQGNIASAKAIYQSILT 381
>sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1
Length = 641
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/392 (20%), Positives = 153/392 (39%), Gaps = 73/392 (18%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWR 93
HL A+ A ++ L+ +P +WK+Y + NN +++ R + I L V LW
Sbjct: 85 HLFAARKA--FDAFLAHYPYCYGYWKKYADLEKKNNNILEADEVYRRGIQAITLSVDLWM 142
Query: 94 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEE 153
Y+ F+++ + E R F+ + G D S +W YI N + E
Sbjct: 143 HYLNFLKETLDPADPETSLTLRGTFEHAVVSAGLDFRSDKLWEMYI---------NWETE 193
Query: 154 SQRMIAIRKAYQRAVVTPTHHVEQLWK-DYENFENSVSRQLAKGLLSEYQ---------- 202
+ + Y R + PT Q + ++ F+ + L + L+ +
Sbjct: 194 QGNLSGVTSIYSRLLGIPT----QFYSLHFQRFKEHIQGHLPREFLTSEKFIELRKELAS 249
Query: 203 ---------------------SKYTSARAVYRER--KKYCEEIDWNMLAVPPTGSYKEE- 238
+K T+ R R + + E + N V +++EE
Sbjct: 250 MTLHGGTNDDIPSGLEEIKDPAKRTTEVENMRHRIIEVHQEIFNLNEHEVSKIWNFEEEI 309
Query: 239 ------------QQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWY 286
Q WK L FE N SN+RI+ +E+C++ Y + W
Sbjct: 310 KRPYFHVKPLEKAQLNNWKEYLEFELEN-------GSNERIVILFERCVIACACYEEFWI 362
Query: 287 DYATWNAKSGSIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD 345
YA + ++ S++ V+ RA L M+ +A EE +G + A+++ +++ T
Sbjct: 363 KYAKY-MENHSVEGVRHVYNRACHVHLAKKPMVHLLWAAFEEQQGNLEEARRILKNIET- 420
Query: 346 SVNTTALAHIQFIRFLRRTEGVEAARKYFLDA 377
++ A+ ++ + RR V+ A +A
Sbjct: 421 AIEGLAMVRLRRVNLERRHGNVKEAEHLLEEA 452
>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2
SV=1
Length = 690
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 21/211 (9%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 104 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 163
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR----KYFLDARKSPNFTYH 386
+A A++++E + A +I F R + VE AR ++ L N
Sbjct: 164 NVAGARQVFERWMEWQPEEQAWH--SYINFELRYKEVERARTIYERFVLVHPAVKN---- 217
Query: 387 VYVAYALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIR 440
++ YA ++K AH V+E ++ F M E Y+ +A F + +R
Sbjct: 218 -WIKYARF---EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVR 272
Query: 441 ALFERALSSLPPEESIEVWKRFTQFEQMYGD 471
+++ AL + +E+ E++K +T FE+ +GD
Sbjct: 273 VIYKYALDRISKQEAQELFKNYTIFEKKFGD 303
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 105/451 (23%), Positives = 177/451 (39%), Gaps = 78/451 (17%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
V A I+++ ++ P +FW +Y + N +Q+F R + + W YI
Sbjct: 131 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 190
Query: 98 FIRKVYEKKGTEGQEETRKAFD-FMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQR 156
F + E E R ++ F+L H + W++Y F +E+
Sbjct: 191 FELRYKE------VERARTIYERFVLVH-----PAVKNWIKYARF---------EEKHAY 230
Query: 157 MIAIRKAYQRAV--VTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRE 214
RK Y+RAV H E L+ + FE E Q ++ R +Y
Sbjct: 231 FAHARKVYERAVEFFGDEHMDEHLYVAFAKFE-------------ENQKEFERVRVIY-- 275
Query: 215 RKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK--GNPQRIDTASSNKRIIFTYE 272
KY +D S +E Q+ +K FEK G+ + I+ +KR F YE
Sbjct: 276 --KYA--LD--------RISKQEAQE--LFKNYTIFEKKFGDRRGIEDIIVSKR-RFQYE 320
Query: 273 QCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR-----------YA 321
+ + H D W+DY D +V++RA+ +P + R YA
Sbjct: 321 EEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYA 380
Query: 322 FAELEESRGAIAAAKKLYES---LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF-LDA 377
E E++ +++Y++ L+ T A + + +F R + + AR+
Sbjct: 381 LYEELEAKDP-ERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSI 439
Query: 378 RKSP-NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD 436
K P N + Y+ L D+ KL E G + +++A+ + L D
Sbjct: 440 GKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTS----WIKFAELETILGDI 495
Query: 437 RNIRALFERALSSLPPEESIEV-WKRFTQFE 466
RA++E A+S P + EV WK + FE
Sbjct: 496 ERARAIYELAISQ-PRLDMPEVLWKSYIDFE 525
>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1
Length = 690
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 21/211 (9%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 104 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 163
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR----KYFLDARKSPNFTYH 386
+A A++++E + A +I F R + VE AR ++ L N
Sbjct: 164 NVAGARQVFERWMEWQPEEQAWH--SYINFELRYKEVERARTIYERFVLVHPAVKN---- 217
Query: 387 VYVAYALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIR 440
++ YA ++K AH V+E ++ F M E Y+ +A F + +R
Sbjct: 218 -WIKYARF---EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVR 272
Query: 441 ALFERALSSLPPEESIEVWKRFTQFEQMYGD 471
+++ AL + +E+ E++K +T FE+ +GD
Sbjct: 273 VIYKYALDRISKQEAQELFKNYTIFEKKFGD 303
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 105/451 (23%), Positives = 177/451 (39%), Gaps = 78/451 (17%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
V A I+++ ++ P +FW +Y + N +Q+F R + + W YI
Sbjct: 131 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 190
Query: 98 FIRKVYEKKGTEGQEETRKAFD-FMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQR 156
F + E E R ++ F+L H + W++Y F +E+
Sbjct: 191 FELRYKE------VERARTIYERFVLVH-----PAVKNWIKYARF---------EEKHAY 230
Query: 157 MIAIRKAYQRAV--VTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRE 214
RK Y+RAV H E L+ + FE E Q ++ R +Y
Sbjct: 231 FAHARKVYERAVEFFGDEHMDEHLYVAFAKFE-------------ENQKEFERVRVIY-- 275
Query: 215 RKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK--GNPQRIDTASSNKRIIFTYE 272
KY +D S +E Q+ +K FEK G+ + I+ +KR F YE
Sbjct: 276 --KYA--LD--------RISKQEAQE--LFKNYTIFEKKFGDRRGIEDIIVSKR-RFQYE 320
Query: 273 QCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR-----------YA 321
+ + H D W+DY D +V++RA+ +P + R YA
Sbjct: 321 EEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYA 380
Query: 322 FAELEESRGAIAAAKKLYES---LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF-LDA 377
E E++ +++Y++ L+ T A + + +F R + + AR+
Sbjct: 381 LYEELEAKDP-ERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSI 439
Query: 378 RKSP-NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD 436
K P N + Y+ L D+ KL E G + +++A+ + L D
Sbjct: 440 GKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTS----WIKFAELETILGDI 495
Query: 437 RNIRALFERALSSLPPEESIEV-WKRFTQFE 466
RA++E A+S P + EV WK + FE
Sbjct: 496 ERARAIYELAISQ-PRLDMPEVLWKSYIDFE 525
>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4
Length = 848
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 21/211 (9%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 265 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 324
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR----KYFLDARKSPNFTYH 386
+A A++++E + A +I F R + V+ AR ++ L N
Sbjct: 325 NVAGARQVFERWMEWQPEEQAWH--SYINFELRYKEVDRARTIYERFVLVHPDVKN---- 378
Query: 387 VYVAYALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIR 440
++ YA ++K AH V+E ++ F M E Y+ +A F + +R
Sbjct: 379 -WIKYARF---EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVR 433
Query: 441 ALFERALSSLPPEESIEVWKRFTQFEQMYGD 471
+++ AL + +++ E++K +T FE+ +GD
Sbjct: 434 VIYKYALDRISKQDAQELFKNYTIFEKKFGD 464
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 104/458 (22%), Positives = 178/458 (38%), Gaps = 92/458 (20%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
V A I+++ ++ P +FW +Y + N +Q+F R + + W YI
Sbjct: 292 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 351
Query: 98 F---------IRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPAL 148
F R +YE+ F+L H D+ + W++Y F
Sbjct: 352 FELRYKEVDRARTIYER--------------FVLVH--PDVKN---WIKYARF------- 385
Query: 149 NAQEESQRMIAIRKAYQRAV--VTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYT 206
+E+ RK Y+RAV H E L+ + FE E Q ++
Sbjct: 386 --EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFE-------------ENQKEFE 430
Query: 207 SARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK--GNPQRIDTASSN 264
R +Y KY +D S ++ Q+ +K FEK G+ + I+ +
Sbjct: 431 RVRVIY----KYA--LD--------RISKQDAQE--LFKNYTIFEKKFGDRRGIEDIIVS 474
Query: 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR----- 319
KR F YE+ + H D W+DY +A +V++RA+ +P + R
Sbjct: 475 KR-RFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRY 533
Query: 320 ------YAFAELEESRGAIAAAKKLYES---LLTDSVNTTALAHIQFIRFLRRTEGVEAA 370
YA E E++ +++Y++ L+ T A I + +F R + + A
Sbjct: 534 IYLWINYALYEELEAKDP-ERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLA 592
Query: 371 RKYF-LDARKSP-NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYAD 428
R+ K P N + VY+ L D+ KL E G + +++A+
Sbjct: 593 RRALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTS----WIKFAE 648
Query: 429 FLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFE 466
+ L D RA++E A+S + +WK + FE
Sbjct: 649 LETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFE 686
>sp|P87312|CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf4 PE=1 SV=1
Length = 674
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 19/212 (8%)
Query: 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 340
Y +W Y K+ +I+ A +F RA+ LP + L Y + +EE G I ++++E
Sbjct: 103 YIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFE 162
Query: 341 SLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK 400
L + + +IR RR E AR + H V L ++
Sbjct: 163 RWLKWEPDENCW--MSYIRMERRYHENERARGIY-----ERFVVVHPEVTNWLRWARFEE 215
Query: 401 DPKLAHNVFEAGL-------KRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPE 453
+ A NV + L + F++E +I +A F R + R +F+ A+ +P
Sbjct: 216 ECGNAANVRQVYLAAIDALGQEFLNERFFIA-FAKFEIRQKEYERARTIFKYAIDFMPRS 274
Query: 454 ESIEVWKRFTQFEQMYGD---LDSTLKVEQRR 482
+S+E++K +T FE+ +GD ++ST+ +++RR
Sbjct: 275 KSMELYKEYTHFEKQFGDHLGVESTV-LDKRR 305
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 103/519 (19%), Positives = 196/519 (37%), Gaps = 101/519 (19%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
+ A ++++ ++ P K W +YV + N +Q+F R L W YIR
Sbjct: 120 INHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEPDENCWMSYIR 179
Query: 98 FIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEY-----------ITFLKSLP 146
R+ +E + G E F++ H ++++ W + +L ++
Sbjct: 180 MERRYHENERARGIYER-----FVVVH--PEVTNWLRWARFEEECGNAANVRQVYLAAID 232
Query: 147 ALNAQEESQRM------IAIR-KAYQRAVVTPTHHVE--------QLWKDYENFENSVSR 191
AL + ++R IR K Y+RA + ++ +L+K+Y +FE
Sbjct: 233 ALGQEFLNERFFIAFAKFEIRQKEYERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGD 292
Query: 192 QLA-------------KGLLSEYQSKY----------TSARAVYRERKKYCEEIDWNMLA 228
L + LL + Y SA + R+ Y + I
Sbjct: 293 HLGVESTVLDKRRLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAI----AK 348
Query: 229 VPPTGSYKEEQQWI-AWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYH----YPD 283
VP ++++ W FE+ + + +D A Y++ L + H +
Sbjct: 349 VPEVVEKNAWRRYVYIWLNYCLFEEIDVKDVDRARK------VYQEALKLIPHKKFTFAK 402
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343
+W YA + + ID A K RAL P ++ R + E E++ + LYE +
Sbjct: 403 LWLMYAMFELRQRKIDVARKTLGRALGMCPKPKLFR-GYIEFEDAIKQFDRCRILYEKWI 461
Query: 344 TDSVNTTA--LAHIQFIRFLRRTEGVEAARKYFLDA--RKSPNFTYHVYVAYALMAFCQD 399
A L + L ++ A ++ ++P + Y+ + ++
Sbjct: 462 LYDPEACAPWLGYAALETKLGDSDRARALYNLAVNQPILETPELVWKAYIDFEF----EE 517
Query: 400 KDPKLAHNVFEAGLKRFMHEPAYILEYADF-LSRLNDDR---------------NIRALF 443
+ A ++++ L+ H +I +A+F ++ L DD R +F
Sbjct: 518 MEYGKARSIYQQLLRTAPHVKVWI-SFANFEIAHLEDDDEEPPNEEVASPTAVVRARNVF 576
Query: 444 ERALSSLP----PEESIEVWKRFTQFEQMYGDLDSTLKV 478
E AL+ L EE + + + + QFE M+G D+ V
Sbjct: 577 ENALAHLRQQGLKEERVVLLEAWKQFEAMHGTEDTRKHV 615
>sp|Q9HF03|CLF1_CRYNH Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
grubii serotype A (strain H99 / ATCC 208821 / CBS 10515
/ FGSC 9487) GN=CLF1 PE=3 SV=1
Length = 724
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 15/198 (7%)
Query: 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342
D+W Y K+ +I+ A +F RA+ LP + L Y + LEE ++ A++++E
Sbjct: 110 DLWIKYTDMELKARNINHARNLFDRAITLLPRVDALWYKYVYLEELLLNVSGARQIFERW 169
Query: 343 LTDSVNTTAL-AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK- 400
+ N A ++I+ + A + ++ R P +VA+A F +D+
Sbjct: 170 MQWEPNDKAWQSYIKLEERYNELDRASAIYERWIACRPIPK----NWVAWA--KFEEDRG 223
Query: 401 DPKLAHNVFEAGLKRFMHEPAYILE-------YADFLSRLNDDRNIRALFERALSSLPPE 453
P A VF+ L+ F E + + +A +RL + R +++ AL+ LP
Sbjct: 224 QPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKFALARLPRS 283
Query: 454 ESIEVWKRFTQFEQMYGD 471
+S ++ ++T+FE+ +GD
Sbjct: 284 KSASLYAQYTKFEKQHGD 301
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVP--LWRCYIRFIRK 101
+YE+ L+ P+ + W Q+ + AV + + + +F + L +P +W+ YI F
Sbjct: 475 LYEKFLTYDPSLSSAWIQWTQVESAVEDFERVRAIFELAVQQSLDMPEIVWKAYIDF--- 531
Query: 102 VYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEY 138
+ G +E R ++ +L S +W+ Y
Sbjct: 532 ---EAGEGERERARNLYERLLERT----SHVKVWISY 561
>sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CLF1 PE=3 SV=1
Length = 726
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 94/198 (47%), Gaps = 15/198 (7%)
Query: 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342
D+W Y K+ +I+ A +F RA+ LP + L Y + LEE ++ A++++E
Sbjct: 110 DLWIKYTDMELKARNINHARNLFDRAITLLPRVDALWYKYVYLEELLLNVSGARQIFERW 169
Query: 343 LTDSVNTTAL-AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK- 400
+ N A ++I+ + A + ++ R P +V +A F +D+
Sbjct: 170 MQWEPNDKAWQSYIKLEERYNELDRASAIYERWIACRPIPK----NWVTWA--KFEEDRG 223
Query: 401 DPKLAHNVFEAGLKRFMHEPAYILE-------YADFLSRLNDDRNIRALFERALSSLPPE 453
P A VF+ L+ F E + + +A +RL + R +++ AL+ LP
Sbjct: 224 QPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKFALARLPRS 283
Query: 454 ESIEVWKRFTQFEQMYGD 471
+S ++ ++T+FE+ +GD
Sbjct: 284 KSASLYAQYTKFEKQHGD 301
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 54/307 (17%)
Query: 229 VPPTGSYKEEQQWI-AWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYH----YPD 283
VPP + +++I W + FE+ + + D A Y+ + + H +
Sbjct: 368 VPPALEKRYWRRYIYLWLQYAAFEEIDTKDYDRARD------VYKAAVKLVPHKTFTFAK 421
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343
+W YA + + + AA KV + P ++ + ELE + LYE L
Sbjct: 422 LWLAYAYFEIRRLDVSAARKVLGAGIGMCPKPKLFT-GYIELEMRLREFDRVRTLYEKFL 480
Query: 344 TDSVNTTALAHIQFIRFLRRTEGVEAARKYF-LDARKS---PNFTYHVYVAYALMAFCQD 399
T + ++ A IQ+ + E E R F L ++S P + Y+ + +
Sbjct: 481 TYDPSLSS-AWIQWTQVESAVEDFERVRAIFELAVQQSLDMPEIVWKAYIDFE----AGE 535
Query: 400 KDPKLAHNVFEAGLKRFMHEPAYI----LEYADFLSRLNDDRN-----------IRALFE 444
+ + A N++E L+R H +I +E A ++D N R +FE
Sbjct: 536 GERERARNLYERLLERTSHVKVWISYALMEIATLGGGEDEDGNEIEGEAGDADLARQVFE 595
Query: 445 RALSSLPPEES-------IEVWKRFTQFEQMYGDLDSTLKVEQ-----RRKEALSRTGEE 492
R L + +E WK FEQ +GD ++ KVE R++ R E+
Sbjct: 596 RGYKDLRAKGEKEDRAVLLESWK---SFEQEHGDEETLAKVEDMLPTTRKR---WRKAED 649
Query: 493 GASALED 499
G+ LE+
Sbjct: 650 GSGELEE 656
>sp|P0CO11|CLF1_CRYNB Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CLF1 PE=3 SV=1
Length = 726
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 94/198 (47%), Gaps = 15/198 (7%)
Query: 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342
D+W Y K+ +I+ A +F RA+ LP + L Y + LEE ++ A++++E
Sbjct: 110 DLWIKYTDMELKARNINHARNLFDRAITLLPRVDALWYKYVYLEELLLNVSGARQIFERW 169
Query: 343 LTDSVNTTAL-AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK- 400
+ N A ++I+ + A + ++ R P +V +A F +D+
Sbjct: 170 MQWEPNDKAWQSYIKLEERYNELDRASAIYERWIACRPIPK----NWVTWA--KFEEDRG 223
Query: 401 DPKLAHNVFEAGLKRFMHEPAYILE-------YADFLSRLNDDRNIRALFERALSSLPPE 453
P A VF+ L+ F E + + +A +RL + R +++ AL+ LP
Sbjct: 224 QPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKFALARLPRS 283
Query: 454 ESIEVWKRFTQFEQMYGD 471
+S ++ ++T+FE+ +GD
Sbjct: 284 KSASLYAQYTKFEKQHGD 301
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 54/307 (17%)
Query: 229 VPPTGSYKEEQQWI-AWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYH----YPD 283
VPP + +++I W + FE+ + + D A Y+ + + H +
Sbjct: 368 VPPALEKRYWRRYIYLWLQYAAFEEIDTKDYDRARD------VYKAAVKLVPHKTFTFAK 421
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343
+W YA + + + AA KV + P ++ + ELE + LYE L
Sbjct: 422 LWLAYAYFEIRRLDVSAARKVLGAGIGMCPKPKLFT-GYIELEMRLREFDRVRTLYEKFL 480
Query: 344 TDSVNTTALAHIQFIRFLRRTEGVEAARKYF-LDARKS---PNFTYHVYVAYALMAFCQD 399
T + ++ A IQ+ + E E R F L ++S P + Y+ + +
Sbjct: 481 TYDPSLSS-AWIQWTQVESAVEDFERVRAIFELAVQQSLDMPEIVWKAYIDFE----AGE 535
Query: 400 KDPKLAHNVFEAGLKRFMHEPAYI----LEYADFLSRLNDDRN-----------IRALFE 444
+ + A N++E L+R H +I +E A ++D N R +FE
Sbjct: 536 GERERARNLYERLLERTSHVKVWISYALMEIATLGGGEDEDGNEIEGEAGDADLARQVFE 595
Query: 445 RALSSLPPEES-------IEVWKRFTQFEQMYGDLDSTLKVEQ-----RRKEALSRTGEE 492
R L + +E WK FEQ +GD ++ KVE R++ R E+
Sbjct: 596 RGYKDLRAKGEKEDRAVLLESWK---SFEQEHGDEETLAKVEDMLPTTRKR---WRKAED 649
Query: 493 GASALED 499
G+ LE+
Sbjct: 650 GSGELEE 656
>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3
SV=1
Length = 676
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 104/466 (22%), Positives = 179/466 (38%), Gaps = 78/466 (16%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
+ A + ++ +++ P KFW +YV + N T+Q+F R + W YI+
Sbjct: 122 INHARNLLDRAVTILPRVDKFWYKYVYMEETLGNIQGTRQVFERWMSWEPDEGAWSAYIK 181
Query: 98 FIRKVYEKKGTEGQEETRKAFD-FMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQR 156
EK+ E E R F F + H W+++ F +EE
Sbjct: 182 L-----EKRYNEF-ERARAIFQRFTIVH-----PEPRNWIKWARF---------EEEYGT 221
Query: 157 MIAIRKAYQRAVVTPTHHV--EQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRE 214
+R+ Y A+ T E+L+ Y FE + +Y ARA+Y
Sbjct: 222 SDLVREVYGMAIETLGEDFMDEKLFIAYAKFEAKLK-------------EYERARAIY-- 266
Query: 215 RKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK--GNPQRIDTASSNKRIIFTYE 272
KY + +P + + K TFEK G+ + ++ +KR + YE
Sbjct: 267 --KYA------LDRLPRSKAMALH------KAYTTFEKQFGDREGVEDVILSKRRV-QYE 311
Query: 273 QCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR-----------YA 321
+ L D+W+D+A SG D +++RA+ +P S+ R YA
Sbjct: 312 EQLKENPRNYDVWFDFARLEETSGDPDRVRDIYERAIAQIPPSQEKRHWRRYIYLWIFYA 371
Query: 322 FAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIR--FLRRTEGVEAARKYFLDA-- 377
E E++ A + E L A I ++ F R ++AARK A
Sbjct: 372 IWEEMEAKDVDRARQIYTECLKLIPHKKFTFAKIWLLKAQFDIRQMDLQAARKTLGQAIG 431
Query: 378 --RKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLND 435
K F ++ + L F + ++E ++ ++YA+ L+D
Sbjct: 432 MCPKDKLFRGYIDLERQLFEFVR------CRTLYEKQIEWNPANSQSWIKYAELERGLDD 485
Query: 436 DRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQR 481
RA+FE + + VWK + FE+ G+ D ++ +R
Sbjct: 486 SERARAIFELGIDQPMLDMPELVWKAYIDFEEYEGEYDRVRQLYER 531
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 7/198 (3%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343
+W Y ++ +I+ A + RA+ LP + Y + +EE+ G I ++++E +
Sbjct: 108 LWIRYIESEMRNRNINHARNLLDRAVTILPRVDKFWYKYVYMEETLGNIQGTRQVFERWM 167
Query: 344 TDSVNTTALAHIQFIRFLRRTEGVEAAR---KYFLDARKSPNFTYHVYVAYALMAFCQDK 400
+ + A + +I+ +R E AR + F P + + + D
Sbjct: 168 SWEPDEGAWS--AYIKLEKRYNEFERARAIFQRFTIVHPEPR-NWIKWARFEEEYGTSDL 224
Query: 401 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWK 460
++ E + FM E +I YA F ++L + RA+++ AL LP +++ + K
Sbjct: 225 VREVYGMAIETLGEDFMDEKLFIA-YAKFEAKLKEYERARAIYKYALDRLPRSKAMALHK 283
Query: 461 RFTQFEQMYGDLDSTLKV 478
+T FE+ +GD + V
Sbjct: 284 AYTTFEKQFGDREGVEDV 301
>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis
GN=CLF1 PE=3 SV=1
Length = 677
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 109/487 (22%), Positives = 189/487 (38%), Gaps = 90/487 (18%)
Query: 40 QAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQV-PLWRCYIRF 98
+A ++E+ L V PTA W +Y+EA M N + + L R + I +V LW Y
Sbjct: 90 RARSVFERALDVDPTAVVLWIRYIEAEMKTRNINHARNLLDRAVTIYSRVDKLWYKY--- 146
Query: 99 IRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMI 158
VY ++ TR+ F+ +S + + G YI K +
Sbjct: 147 ---VYMEEMLGNIPGTRQVFERWMSWEPDEGAWGA----YIKLEKRYNEFDR-------- 191
Query: 159 AIRKAYQRAVVTPTHHVEQLWKDYENFENSVS-------------RQLAKGLLSE----- 200
+R ++R T H + W + FE L + + E
Sbjct: 192 -VRAIFER--FTVVHPEPKNWIKWARFEEEYGTSDMVREVYGLAIETLGEDFMDEKLFIA 248
Query: 201 ---YQSK---YTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK-- 252
Y++K + ARA+Y KY + +P S K TFEK
Sbjct: 249 YARYEAKLKEFERARAIY----KYA------LDRLPRAKSVALH------KAYTTFEKQF 292
Query: 253 GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL 312
G+ + ++ +KR + EQ +Y DIW+D+ SG ++ V++RA+ +
Sbjct: 293 GDREGVEDVILSKRRVQYEEQIKENPKNY-DIWFDFVRLEESSGDVERVRDVYERAIAQM 351
Query: 313 PDSEMLR-----------YAFAELEESRGAIAAAKKLYES---LLTDSVNTTALAHIQFI 358
P S+ R YA E E++ + A ++Y+ L+ T A +
Sbjct: 352 PPSQEKRHWRRYIYLWIFYALWEELEAKD-MERAHQIYQECIRLIPHKKFTFAKIWLMKA 410
Query: 359 RFLRRTEGVEAARKYFLDAR----KSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 414
+F R ++AARK A K F ++ + L F + +FE ++
Sbjct: 411 QFEIRQMDLQAARKTLGHAIGACPKDKLFKGYIDLERQLFEFVR------CRKLFEKQIE 464
Query: 415 RFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDS 474
+++A+ L+D RA++E +S + +WK + FE+ G+ D
Sbjct: 465 WSPSNCQAWIKFAELERGLDDIDRARAIYELGISQPVLDMPELLWKSYIDFEEYEGEYDR 524
Query: 475 TLKVEQR 481
T + +R
Sbjct: 525 TRALYER 531
>sp|Q5BDX1|CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1
PE=3 SV=2
Length = 673
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 105/467 (22%), Positives = 182/467 (38%), Gaps = 80/467 (17%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
+ A + ++ +++ P K W +YV + N T+Q+F R + W YI+
Sbjct: 122 INHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPDEGAWSAYIK 181
Query: 98 FIRKVYEKKGTEGQEETRKAFD-FMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQR 156
EK+ E E R F F + H W+++ F +EE
Sbjct: 182 L-----EKRYNEF-ERARAIFQRFTIVH-----PEPRNWIKWARF---------EEEYGT 221
Query: 157 MIAIRKAYQRAVVTPTHHV--EQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRE 214
+R+ Y AV T E+L+ Y FE + +Y ARA+Y
Sbjct: 222 SDLVREVYGLAVETLGEDFMDEKLFIAYARFETKLK-------------EYERARAIY-- 266
Query: 215 RKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK--GNPQRIDTASSNKRIIFTYE 272
KY + +P + S K TFEK G+ + ++ KR + E
Sbjct: 267 --KYA------LDRLPRSKSI------TLHKAYTTFEKQFGDREGVENVILAKRRVQYEE 312
Query: 273 QCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR-----------YA 321
Q L +Y D+W+D+A +SG + V++RA+ +P S+ R YA
Sbjct: 313 QLKENLRNY-DVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYA 371
Query: 322 FAELEESRGAIAAAKKLYES---LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDA- 377
E E++ I A+++Y L+ T A + +F R ++AARK A
Sbjct: 372 LWEEMEAKD-IDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQAI 430
Query: 378 ---RKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN 434
K F ++ + L F + ++E ++ ++YA+ L+
Sbjct: 431 GMCPKDKLFRGYIDLERQLFEFVR------CRTLYEKQIEWNPSNSQSWIQYAELERGLD 484
Query: 435 DDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQR 481
D RA++E + + VWK + FE G+ + ++ +R
Sbjct: 485 DTERARAIYELGIDQPTLDMPELVWKAYIDFEDDEGEYERERQLYER 531
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343
+W Y ++ +I+ A + RA+ LP + L Y + +EE+ G I ++++E +
Sbjct: 108 LWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWM 167
Query: 344 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTY-----HVYVAYALMAFCQ 398
+ + A + +I+ +R E AR F FT ++ +A +
Sbjct: 168 SWEPDEGAWS--AYIKLEKRYNEFERARAIF------QRFTIVHPEPRNWIKWARFE-EE 218
Query: 399 DKDPKLAHNVF----EAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE 454
L V+ E + FM E +I YA F ++L + RA+++ AL LP +
Sbjct: 219 YGTSDLVREVYGLAVETLGEDFMDEKLFIA-YARFETKLKEYERARAIYKYALDRLPRSK 277
Query: 455 SIEVWKRFTQFEQMYGDLDSTLKV 478
SI + K +T FE+ +GD + V
Sbjct: 278 SITLHKAYTTFEKQFGDREGVENV 301
>sp|Q7KRW8|PRP39_DROME Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646
PE=1 SV=1
Length = 1066
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 116/270 (42%), Gaps = 25/270 (9%)
Query: 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW----N 292
E Q WK L FE R +R++ +E+CL+ Y + W +
Sbjct: 701 ERAQLKNWKDYLDFEIEKGDR-------ERVLVLFERCLIACALYDEFWLKMLRYLESLE 753
Query: 293 AKSGSIDAAIKVFQRALK-ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA 351
+SG +D V++RA + PD L +A EE + A ++ + + N
Sbjct: 754 DQSGVVDLVRDVYRRACRIHHPDKPSLHLMWAAFEECQMNFDDAAEILQRIDQRCPNLLQ 813
Query: 352 LAHIQFIRFLRRTEGVEAAR---KYFLDARKSPNFTYHVYVAYA--LMAFCQDKDPKLAH 406
L++ + I RR ++ R K+++++ K+ + + YA L C D D LA
Sbjct: 814 LSY-RRINVERRRGALDKCRELYKHYIESTKNKGIAGSLAIKYARFLNKICHDLDAGLA- 871
Query: 407 NVFEAGLKRFMHEPAYILEYADF-LSRLN-DDRNIRALFER--ALSSLPPEESIEVWKRF 462
+ L+R L+ D L R D++ + + ++ A + + P++ + +R
Sbjct: 872 -ALQQALERDPANTRVALQMIDLCLQRPKVDEQEVVEIMDKFMARADIEPDQKVLFAQRK 930
Query: 463 TQFEQMYGDLDSTLKVEQRR-KEALSRTGE 491
+F + +G L+ QR ++AL++ E
Sbjct: 931 VEFLEDFGSTARGLQDAQRALQQALTKAKE 960
>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1
Length = 691
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 22/219 (10%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343
+W Y KS +I+ A + RA+ LP + L Y + +EE G I ++++E +
Sbjct: 108 LWIRYVEAELKSRNINFARNLLDRAVTHLPRVDKLWYKYVWVEEMLGNIPGVRQVFERWM 167
Query: 344 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLD---ARKSPNFTYHVYVAYALMAFCQDK 400
+ A + FI+ +R + AR+ F P + + + D+
Sbjct: 168 EWQPDEAAWS--AFIKLEQRYGEYDRAREIFTRFTMVHPEPR-NWIKWSKFEEEYGTSDR 224
Query: 401 DPKLAHNVFEAGLKR-------FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPE 453
VFE ++ F+ E +I YA + ++L+D RA+++ L +LP
Sbjct: 225 ----VREVFERAIEELSKYGDEFVEERLFIA-YARYEAKLHDLDRARAIYKFGLENLPRS 279
Query: 454 ESIEVWKRFTQFEQMYGDL----DSTLKVEQRRKEALSR 488
+++ + K +T FE+ YGD D L +R E L R
Sbjct: 280 KAMLLHKEYTTFEKQYGDREGVEDVVLSKRRRHYEDLVR 318
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 43/226 (19%)
Query: 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYA---------FAELEESRGAI- 332
D+W+DYA SG ID +V+++A+ +P ++ R+ FA EE+
Sbjct: 325 DVWFDYARLEEASGDIDRTREVYEKAIAQVPPTQAKRHWRRYIYLWIFFALWEETEAKNP 384
Query: 333 AAAKKLYES---LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYV 389
A+++Y++ L+ T A + F R + AARK A
Sbjct: 385 ERARQVYDTCLKLIPHRTFTFAKVWMHKAHFEIRQGDLAAARKTLGRA------------ 432
Query: 390 AYALMAFC-QDKDPK----LAHNVFEAGLKRFMHE------PAYI---LEYADFLSRLND 435
+ C +D+ K + ++E G R ++E PA +++A+ L+D
Sbjct: 433 ----IGMCPKDRLFKGYIEMEQKLYEFGRCRILYEKHIAYNPANCSTWVKWAELERGLDD 488
Query: 436 DRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQR 481
RA+ + ++ + VWK + FE+ G+ D T + +R
Sbjct: 489 LDRARAILDMGIAQPVLDMPEVVWKSYIDFEEEEGEYDKTRSLYER 534
>sp|Q1JPZ7|PRP39_DANRE Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2
Length = 752
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/341 (20%), Positives = 136/341 (39%), Gaps = 41/341 (12%)
Query: 52 FPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWRCYIRFIRKVYEKKGTEG 110
+P +WK+Y + +++ R L I L V LW YI F+R+ + E
Sbjct: 196 YPYCYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLRENQDTSDGEA 255
Query: 111 QEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT 170
+ R +++ + G+D S +W YI + + E ++ + Y R +
Sbjct: 256 ESRIRASYEHAVLACGTDFRSDRLWEAYIAW---------ETEQGKLANVTAIYDRLLCI 306
Query: 171 PTHHVEQLW-KDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLA- 228
PT QL+ + ++ F++ V K LSE ++ S R K + D A
Sbjct: 307 PT----QLYSQHFQKFKDHVQSNNPKHFLSE--EEFVSLRVELANANKPSGDEDAETEAP 360
Query: 229 ---VPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTA----SSNKRII---FTYEQCLMYL 278
+PP E KR+ E + I+T + N+ + + +E+ +
Sbjct: 361 GEELPPGT----EDLPDPAKRVTEIENMRHKVIETRQEMFNHNEHEVSKRWAFEEGIKRP 416
Query: 279 YHYP--------DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
Y + + W +Y + ++G+ + + +F+R L A E +A+ ES
Sbjct: 417 YFHVKALEKTQLNNWREYLDFELENGTPERVVVLFERCLIACALYEEFWIKYAKYLESY- 475
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR 371
+ A + +Y+ T + H+ + F + ++ AR
Sbjct: 476 STEAVRHIYKKACTVHLPKKPNVHLLWAAFEEQQGSIDEAR 516
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 118/275 (42%), Gaps = 28/275 (10%)
Query: 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 296
E+ Q W+ L FE N + +R++ +E+CL+ Y + W YA + +S
Sbjct: 424 EKTQLNNWREYLDFELEN-------GTPERVVVLFERCLIACALYEEFWIKYAKY-LESY 475
Query: 297 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355
S +A ++++A LP + +A EE +G+I A+ + +++ SV A+ +
Sbjct: 476 STEAVRHIYKKACTVHLPKKPNVHLLWAAFEEQQGSIDEARSILKAVEV-SVPGLAMVRL 534
Query: 356 QFIRFLRRTEGVEAARKYFLDA-----RKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFE 410
+ + RR +E A DA S + Y V +A L+ K A V
Sbjct: 535 RRVSLERRHGNMEEAEALLQDAITNGRNSSESSFYSVKLARQLVKV--QKSIGRAKKVLL 592
Query: 411 AGLKRFMHEPAYILEYADFLSRLNDDRN---IRALFERAL-SSLPPEESIEVWKRFTQFE 466
+++ P L + + +N I A F+RAL SS+ E I +R F
Sbjct: 593 EAVEKDETNPKLYLNLLELEYSGDVQQNEAEIIACFDRALSSSMALESRITFSQRKVDFL 652
Query: 467 QMYGDLDSTLKV--EQRRK-----EALSRTGEEGA 494
+ +G +TL EQ ++ E+ R E G+
Sbjct: 653 EDFGSDINTLMAAYEQHQRLLAEQESFKRKAENGS 687
>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=clf-1 PE=3 SV=1
Length = 695
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 103/479 (21%), Positives = 184/479 (38%), Gaps = 100/479 (20%)
Query: 39 AQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVP-LWRCYIR 97
A+A ++E+ L V P + W +YV+A + N + + L R + +V LW Y+
Sbjct: 89 ARARSVFERALDVHPNNTQLWIRYVQAEIKNRNINHARNLLDRAVTRLPRVTSLWYQYLY 148
Query: 98 FIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRM 157
+ + + GT R+ FD + + + W YI K + E
Sbjct: 149 VMEMLGDIPGT------RQVFDRWMKWQPDEQA----WSAYIRLEKRYGEFDRARE---- 194
Query: 158 IAIRKAYQRAVVTPTHHVEQLWKDYENFE-----------------NSVSRQLAKGLLSE 200
I +A+ T H + W + FE +++ L + E
Sbjct: 195 --IFRAF-----TAVHPEPRTWLKWAKFEEEYGTSDTVREVFQTAIQTIAETLGDDAVDE 247
Query: 201 --------YQSK---YTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLT 249
Y+++ Y ARA+Y+ + + +P + S + T
Sbjct: 248 RIFIAFARYEARLREYERARAIYK----------FGLDNLPRSKSMTLHAHYT------T 291
Query: 250 FEK--GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQR 307
FEK G+ + ++ KR EQ +Y D+W+D+A G +D +V++R
Sbjct: 292 FEKQFGDKEGVEDVILTKRRRLYEEQVKENAKNY-DVWFDFARLEESGGDVDRTREVYER 350
Query: 308 ALKALPDSE-----------MLRYAFAELEESRGAIAAAKKLYES---LLTDSVNTTALA 353
A+ +P ++ L YA E E++ I A+++Y++ L+ T A
Sbjct: 351 AIAQVPPTQEKRHWRRYIFLFLFYAIWEERETKD-IGRARQIYDTCLNLIPHKKFTFAKV 409
Query: 354 HIQFIRFLRRTEGVEAARKYFLDAR----KSPNFTYHVYVAYALMAFCQDKDPKLAHNVF 409
+ F R + ARK A K F ++ + L F + ++
Sbjct: 410 WVAKAHFEIRQGQLTTARKTLGRAIGMCPKDKIFKEYILLEQKLYEF------ERCRTLY 463
Query: 410 EAGLKRFMHEPAYI---LEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQF 465
E K M+ PA +++A+ L+D RA+FE A+S + VWK + F
Sbjct: 464 E---KHVMYNPANCQTWIKWAELERGLDDLERTRAIFELAVSQPILDMPEVVWKAYIDF 519
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 15/197 (7%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343
+W Y K+ +I+ A + RA+ LP L Y + + E G I +++++ +
Sbjct: 108 LWIRYVQAEIKNRNINHARNLLDRAVTRLPRVTSLWYQYLYVMEMLGDIPGTRQVFDRWM 167
Query: 344 TDSVNTTALAHIQFIRFLRRTEGVEAARKYF--LDARKSPNFTYHVYVAYALMAFCQDKD 401
+ A + +IR +R + AR+ F A T+ + + D
Sbjct: 168 KWQPDEQAWS--AYIRLEKRYGEFDRAREIFRAFTAVHPEPRTWLKWAKFEEEYGTSD-- 223
Query: 402 PKLAHNVFEAGLKRFMH-------EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE 454
VF+ ++ + + +A + +RL + RA+++ L +LP +
Sbjct: 224 --TVREVFQTAIQTIAETLGDDAVDERIFIAFARYEARLREYERARAIYKFGLDNLPRSK 281
Query: 455 SIEVWKRFTQFEQMYGD 471
S+ + +T FE+ +GD
Sbjct: 282 SMTLHAHYTTFEKQFGD 298
Score = 33.9 bits (76), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 89/215 (41%), Gaps = 23/215 (10%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343
+WY Y G I +VF R +K PD + A+ LE+ G A++++ +
Sbjct: 142 LWYQYLYVMEMLGDIPGTRQVFDRWMKWQPDEQAWS-AYIRLEKRYGEFDRAREIFRAFT 200
Query: 344 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTY-------HVYVAYALMAF 396
+V+ +++ +F + R+ F A ++ T +++A+A
Sbjct: 201 --AVHPEPRTWLKWAKFEEEYGTSDTVREVFQTAIQTIAETLGDDAVDERIFIAFARYE- 257
Query: 397 CQDKDPKLAHNVFEAGLKRFMHEPAYILE--YADFLSRLNDDRNI--------RALFERA 446
+ ++ + A +++ GL + L Y F + D + R L+E
Sbjct: 258 ARLREYERARAIYKFGLDNLPRSKSMTLHAHYTTFEKQFGDKEGVEDVILTKRRRLYEEQ 317
Query: 447 LSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQR 481
+ ++ +VW F + E+ GD+D T +V +R
Sbjct: 318 VKE--NAKNYDVWFDFARLEESGGDVDRTREVYER 350
>sp|Q6C186|CLF1_YARLI Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CLF1 PE=3 SV=1
Length = 676
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 101/468 (21%), Positives = 178/468 (38%), Gaps = 73/468 (15%)
Query: 39 AQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQV-PLWRCYIR 97
A+A ++E+ L V T W +Y++ + N + + L R + + +V LW Y+
Sbjct: 83 ARARSVFERALEVNSTHVPTWIRYIQCELKEKNINHARNLLDRAVTLLPRVDKLWFTYV- 141
Query: 98 FIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRM 157
EET L ++ + W+ + + + A E+ R
Sbjct: 142 ------------ATEET-------LGNIAGCRAVFERWMHWRPPVTAWAAYVNMEKRYRE 182
Query: 158 IAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQ------------------------L 193
+ R VT H W + FE + L
Sbjct: 183 FDRARGILRRYVT-VHPGAPAWNKWAKFEMEAGNRDTVREVYALGIDTLVEMAHGGVDFL 241
Query: 194 AKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKG 253
+ LL+ + S T R R R Y + + +P + S K + A+++ ++G
Sbjct: 242 DESLLAGWASFETRHREYERARALYT----YGLEKLPKSKSAKLYADYTAFEKQYGAKEG 297
Query: 254 NPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG-SIDAAIKVFQRALKAL 312
+ T +K YE L D W+ Y T +SG D ++F+RA+ +
Sbjct: 298 IENVVLTKRRSK-----YEDQLKEDPADYDTWFSYITLGQESGLEADQIREIFERAVSNV 352
Query: 313 PDSE----------MLRYAFAELEESRGAIAAAKKLYE---SLLTDSVNTTALAHIQFIR 359
P ++YA E E++ + A+++Y+ S++ T A + + +
Sbjct: 353 PPHSKRLWRRYIFLWIKYAIWEELENK-EVEKAREIYKTCISIIPHKKFTFAKVWLLWAK 411
Query: 360 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAY-ALMAFCQDKDPKLAHNVFEAGLKRFMH 418
F R + ARK +Y Y AL A ++ D +++ +++F
Sbjct: 412 FEIRHGNLPEARKILGRGLGMSGGKPALYKGYIALEAKLREFDR--CRKLYDKYVEKFAE 469
Query: 419 EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFE 466
A +EYA+ L D+ RA+FE A+S E VWKRF +FE
Sbjct: 470 FAAPWMEYAELEQMLGDEERARAIFELAVSQPEMEMPELVWKRFIEFE 517
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 22/204 (10%)
Query: 280 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLY 339
H P W Y K +I+ A + RA+ LP + L + + EE+ G IA + ++
Sbjct: 99 HVP-TWIRYIQCELKEKNINHARNLLDRAVTLLPRVDKLWFTYVATEETLGNIAGCRAVF 157
Query: 340 ESLLTDSVNTTALAHI----QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMA 395
E + TA A + R R G+ R+Y +P ++ + + + A
Sbjct: 158 ERWMHWRPPVTAWAAYVNMEKRYREFDRARGI--LRRYVTVHPGAP--AWNKWAKFEMEA 213
Query: 396 FCQDKDPKLAHNVFEAGLKRFMH---------EPAYILEYADFLSRLNDDRNIRALFERA 446
+D V+ G+ + + + + +A F +R + RAL+
Sbjct: 214 GNRD----TVREVYALGIDTLVEMAHGGVDFLDESLLAGWASFETRHREYERARALYTYG 269
Query: 447 LSSLPPEESIEVWKRFTQFEQMYG 470
L LP +S +++ +T FE+ YG
Sbjct: 270 LEKLPKSKSAKLYADYTAFEKQYG 293
>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1
PE=3 SV=1
Length = 705
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 92/210 (43%), Gaps = 17/210 (8%)
Query: 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR 329
+E+ L + P +W YA K+ +I+ A ++ RA+ LP L + + +E+
Sbjct: 97 VFERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFKYTFMEDML 156
Query: 330 GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYV 389
G AA+ ++E + A +++F +R + E R F H Y+
Sbjct: 157 GNYPAARAIFERWMQWKPEPQAWN--SYLKFEQRLKLFENTRLIF-----EKYILVHPYI 209
Query: 390 AYALMAFCQDKDP----KLAHNVFEAGLKRFMHEPA----YILEYADFLSRLNDDRNIRA 441
+ + + ++ + A +F+ ++ F+ E + +A F + + R
Sbjct: 210 K-TWIKYTKFEERLGNIENARTIFQRAIE-FLGEDGNDEQLFIAFAKFEEKYKEIERARV 267
Query: 442 LFERALSSLPPEESIEVWKRFTQFEQMYGD 471
+++ A+ +P + +++ FT FE+ +GD
Sbjct: 268 IYKYAIDHVPKSRAKDLFDTFTNFEKQHGD 297
Score = 40.8 bits (94), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 57/279 (20%)
Query: 41 AAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIR 100
A I+++ + + P ++ W +Y + N A + +F R + + W Y++F +
Sbjct: 128 ARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQWKPEPQAWNSYLKFEQ 187
Query: 101 KVYEKKGTEGQEETRKAFD-FMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIA 159
++ + E TR F+ ++L H W++Y F + L + E+ R I
Sbjct: 188 RL------KLFENTRLIFEKYILVH-----PYIKTWIKYTKFEERLGNI----ENARTI- 231
Query: 160 IRKAYQRAV--VTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKK 217
+QRA+ + + EQL+ + FE E + AR +Y K
Sbjct: 232 ----FQRAIEFLGEDGNDEQLFIAFAKFE-------------EKYKEIERARVIY----K 270
Query: 218 YCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI---DTASSNKRIIFTYEQC 274
Y ID VP + + + FEK + RI D KR F YE+
Sbjct: 271 YA--ID----HVPKSRAKD------LFDTFTNFEKQHGDRIGIEDVVLGKKR--FQYEEE 316
Query: 275 LMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP 313
+ DIW+DY +G I+ ++++R++ LP
Sbjct: 317 IKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLP 355
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 322 FAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP 381
+A EES+ + A+ ++E L D + I++ + + + AR + A
Sbjct: 81 YAAWEESQKDLTRARSVFERFL-DIDHRIPTVWIKYAEMEMKNKNINLARNIWDRAVCLL 139
Query: 382 NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRA 441
++ Y M P A +FE ++ + EP Y F RL N R
Sbjct: 140 PRVSQLWFKYTFMEDMLGNYPA-ARAIFERWMQ-WKPEPQAWNSYLKFEQRLKLFENTRL 197
Query: 442 LFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEG 493
+FE+ + P I+ W ++T+FE+ G++++ + QR A+ GE+G
Sbjct: 198 IFEKYILVHP---YIKTWIKYTKFEERLGNIENARTIFQR---AIEFLGEDG 243
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 42/193 (21%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALP---DSEMLRY--AFAELEESRGAIAAAKKL 338
+W Y ++ ++ I+ A V +RALK + + E L A LE G+ + K+
Sbjct: 1621 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV 1680
Query: 339 YESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ 398
+E R ++ E + K FL H+ YA Q
Sbjct: 1681 FE------------------RAVQYNEPL----KVFL----------HLADIYAKSEKFQ 1708
Query: 399 DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEV 458
+ A ++ LKRF E A ++Y FL R + + +RAL LP +E ++V
Sbjct: 1709 E-----AGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDV 1763
Query: 459 WKRFTQFEQMYGD 471
+F Q E GD
Sbjct: 1764 IAKFAQLEFQLGD 1776
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 10/220 (4%)
Query: 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342
++W GS ++ KVF+RA++ ++ + A++ A +LY +
Sbjct: 1659 NVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLH-LADIYAKSEKFQEAGELYNRM 1717
Query: 343 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYV--AYALMAFCQDK 400
L A+ I++ FL R A+ + A + HV V +A + F Q
Sbjct: 1718 LKRFRQEKAVW-IKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEF-QLG 1775
Query: 401 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVW 459
D + A +FE L + Y D + +++R +FER + SL P+ +
Sbjct: 1776 DAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFF 1835
Query: 460 KRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALED 499
KR+ +E+ +G V+ + E + E +S LED
Sbjct: 1836 KRYLDYEKQHGTEKDVQAVKAKALEYV----EAKSSVLED 1871
Score = 36.6 bits (83), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRY--AFAELEES 328
Y + L +W Y + + A+ +V QRAL+ LP E + FA+LE
Sbjct: 1714 YNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQ 1773
Query: 329 RGAIAAAKKLYESLLT 344
G AK ++E+ L+
Sbjct: 1774 LGDAERAKAIFENTLS 1789
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 424 LEYADFLSRLNDDRNIRALFERALSSLP---PEESIEVWKRFTQFEQMYGDLDSTLKVEQ 480
L+Y F + + RA+ ERAL ++ +E + VW E MYG +S KV +
Sbjct: 1623 LQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFE 1682
Query: 481 R 481
R
Sbjct: 1683 R 1683
>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
Length = 1874
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 405 AHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ 464
A ++ LKRF E A ++Y FL R + +RAL LP +E ++V +F Q
Sbjct: 1713 AGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQ 1772
Query: 465 FEQMYGD-------LDSTLKVEQRRKEALS 487
E GD +STL + +R + S
Sbjct: 1773 LEFQLGDAERARAIFESTLSIYPKRTDVWS 1802
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 6/191 (3%)
Query: 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342
++W GS ++ KVF+RA++ ++ + A++ A +LY +
Sbjct: 1662 NVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLH-LADIYTKSEKFQEAGELYNRM 1720
Query: 343 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYV--AYALMAFCQDK 400
L A+ +++ FL R EA+ + A + HV V +A + F Q
Sbjct: 1721 LKRFRQEKAVW-VKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEF-QLG 1778
Query: 401 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVW 459
D + A +FE+ L + Y D + + + RA+FER + SL P+ +
Sbjct: 1779 DAERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVIHLSLAPKRMKFFF 1838
Query: 460 KRFTQFEQMYG 470
KR+ +E+ +G
Sbjct: 1839 KRYLDYEKQHG 1849
Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRY--AFAELEES 328
Y + L +W Y + + G +A+ +V QRAL+ LP E + FA+LE
Sbjct: 1717 YNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQ 1776
Query: 329 RGAIAAAKKLYESLLT 344
G A+ ++ES L+
Sbjct: 1777 LGDAERARAIFESTLS 1792
>sp|Q6BSP7|CLF1_DEBHA Pre-mRNA-splicing factor CLF1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CLF1 PE=3 SV=2
Length = 714
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 126/342 (36%), Gaps = 88/342 (25%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRC 94
H + A + ++ ++ P K W YV+ + N + +F R L W
Sbjct: 116 HKNITHARNLLDRAVTTLPRVDKLWFLYVQTEETLKNYQMVRIIFERWLSWNPNPSAWDA 175
Query: 95 YIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITF-LKSLPALNAQEE 153
YI YEK+ E ++ H SSG IWL++I F + +P Q +
Sbjct: 176 YIN-----YEKRYDEYDNAREIYIRYVQIH-----SSGEIWLKWIDFEMNDVPIDPEQVK 225
Query: 154 SQRMI------------AIR-------------------KAYQRA--------------- 167
R + A+R K Y+RA
Sbjct: 226 RIRNVFELSVDSMLASEALRGDISLAEIINKWSLWEISVKEYERARAIFQLMLKSDTIQE 285
Query: 168 VVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERK-KYCEEIDWNM 226
++TP Q++ Y FE S Y K T ++ +RK KY EE++
Sbjct: 286 IITPEQR-NQIYSSYTEFEKS------------YGDKDTIESSIMIKRKLKYEEEVN--- 329
Query: 227 LAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFT--YEQCLMYLYHYPDI 284
S + W ++ +L E N +T ++I T ++ + Y Y I
Sbjct: 330 ------KSPSDYDSWWSYISILQQEDNNEVTRETFERAIKVIPTDAFKSTVWRRYIY--I 381
Query: 285 WYDYATWNAKS-GSIDAAIKVFQRALKALPDSEMLRYAFAEL 325
W YA W + GSI+ ++ +ALK +P R+ FA++
Sbjct: 382 WVKYAFWEEFTMGSIENGRNIWNKALKVIPHK---RFTFAKI 420
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 93/213 (43%), Gaps = 21/213 (9%)
Query: 280 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLY 339
H P W Y + +I A + RA+ LP + L + + + EE+ + ++
Sbjct: 102 HIP-FWTHYIQFELSHKNITHARNLLDRAVTTLPRVDKLWFLYVQTEETLKNYQMVRIIF 160
Query: 340 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK--SPNFTYHVYVAYALMAFC 397
E L+ + N +A +I + +R + + AR+ ++ + S + ++ + +
Sbjct: 161 ERWLSWNPNPSAWD--AYINYEKRYDEYDNAREIYIRYVQIHSSGEIWLKWIDFEMNDVP 218
Query: 398 QD-KDPKLAHNVFEAGLKRFMHEPAY---------ILEYADFLSRLNDDRNIRALFERAL 447
D + K NVFE + + A I +++ + + + RA+F+ L
Sbjct: 219 IDPEQVKRIRNVFELSVDSMLASEALRGDISLAEIINKWSLWEISVKEYERARAIFQLML 278
Query: 448 SS------LPPEESIEVWKRFTQFEQMYGDLDS 474
S + PE+ +++ +T+FE+ YGD D+
Sbjct: 279 KSDTIQEIITPEQRNQIYSSYTEFEKSYGDKDT 311
>sp|Q54Z08|SYF1_DICDI Pre-mRNA-splicing factor SYF1 OS=Dictyostelium discoideum GN=xab2
PE=3 SV=1
Length = 850
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 89/223 (39%), Gaps = 50/223 (22%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRAL-----------------KALPDSEMLRYAFAELE 326
++ DYA K + + AI++ +R K L S + + +LE
Sbjct: 448 LYCDYAEMELKHRNYEKAIEILKRGTVSPKKQNTIIEENEPVQKRLFKSIKIWTFYVDLE 507
Query: 327 ESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYH 386
ES G K +YE ++ V T + + F ++L KYF D K+ Y
Sbjct: 508 ESFGTFHNTKSIYEKMIQLKVVTPQII-LNFAKYLEEN-------KYFEDMFKA----YE 555
Query: 387 VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF-LSRLNDDRNIRALFER 445
V L QD ++ L +F+ YA L R D LFE+
Sbjct: 556 HGVQLFLFPHVQD--------IWITYLTKFIQR------YAGMKLERTRD------LFEQ 595
Query: 446 ALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 488
LS +PP+ESI + + FE+ YG ++ V R +++ +
Sbjct: 596 VLSKVPPKESIIFYLMYANFEEQYGLARHSMAVYDRAAKSVDK 638
Score = 41.2 bits (95), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 37 PVAQAAPIYEQLLSVFPTAAKFWKQY-VEAYMAV-------NNDDATKQLFSRCLLICLQ 88
P Q IYE+ + P + K W QY +E +A+ N+ +A LF R L+ +
Sbjct: 59 PQKQRNYIYERAIRELPRSYKIWHQYLLERTLAIRGKCILENSFEAVNTLFERSLVFLDK 118
Query: 89 VP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFL--KSL 145
+P +W Y F+ + ++K T TRK FD L + IW EY F+ +S+
Sbjct: 119 MPRIWIEYCEFL--MIQEKIT----LTRKTFDRALIALPVT-QHYRIWNEYTKFILKRSI 171
Query: 146 PALNAQEESQRMIAIR 161
P+L +R + I+
Sbjct: 172 PSLTCIRVYKRYLKIQ 187
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 405 AHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ 464
+ +FE L P +EY +FL R F+RAL +LP + +W +T+
Sbjct: 105 VNTLFERSLVFLDKMPRIWIEYCEFLMIQEKITLTRKTFDRALIALPVTQHYRIWNEYTK 164
Query: 465 F 465
F
Sbjct: 165 F 165
>sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RRP5 PE=1 SV=1
Length = 1729
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 405 AHNVFEAGLKRFMHEPAYI-LEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFT 463
A +F+A K+F E I + + DFL N+++ R + AL +LP IEV ++F
Sbjct: 1566 AAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEVVRKFA 1625
Query: 464 QFEQMYGD 471
Q E GD
Sbjct: 1626 QLEFAKGD 1633
>sp|O74835|RRP5_SCHPO rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rrp5 PE=1 SV=1
Length = 1690
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 404 LAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRA--LFERALSSLPPEESIEVWKR 461
LA + LK F P+ ++YA FL LN+D+ +A L ER+L SLP E + + ++
Sbjct: 1530 LADEYMQLMLKNFKQVPSVWIQYATFL--LNNDKAEKAHGLLERSLQSLPKSEHVGIIEK 1587
Query: 462 FTQFEQMYGD 471
F E GD
Sbjct: 1588 FAILEFKNGD 1597
Score = 36.6 bits (83), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 271 YEQCLMYLY-HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRY--AFAELEE 327
Y Q ++ + P +W YAT+ + + A + +R+L++LP SE + FA LE
Sbjct: 1534 YMQLMLKNFKQVPSVWIQYATFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEF 1593
Query: 328 SRGAIAAAKKLYESLLT 344
G + ++E LL+
Sbjct: 1594 KNGDPERGRTIFEGLLS 1610
>sp|Q4PB37|CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CLF1 PE=3 SV=1
Length = 781
Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 23/218 (10%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L H+ +W Y K ++ A ++ RA+ LP + L Y + LEE G
Sbjct: 93 YERALDVEPHHLPLWLRYTEQELKMRNVQHARNLYDRAVSILPRIDQLWYKYVHLEELLG 152
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYH---- 386
I ++++E + A +I R + ++ A + T H
Sbjct: 153 NIPGTRQVFERWMKWEPEEKAWH--AYINLEVRYDELDRASAIW-----ERCVTCHPVPK 205
Query: 387 VYVAYALMAFCQDK-DPKLAHNVFEAGLKRFMHEPAYILE--------YADFLSRLNDDR 437
++ +A F +D+ + + A VF+ L ++ E +E +A +RL +
Sbjct: 206 QWIRWA--KFEEDRGNLEKARIVFQMALD-YIGEDEDAMEKAQSVFTAFAKMETRLKEYE 262
Query: 438 NIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDST 475
R +++ AL LP +S ++ +T+FE+ +G ++S
Sbjct: 263 RARVIYKYALERLPRSKSEGIYSSYTRFEKQFGTMNSV 300
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 88/402 (21%), Positives = 146/402 (36%), Gaps = 102/402 (25%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYI- 96
V A +Y++ +S+ P + W +YV + N T+Q+F R + + W YI
Sbjct: 120 VQHARNLYDRAVSILPRIDQLWYKYVHLEELLGNIPGTRQVFERWMKWEPEEKAWHAYIN 179
Query: 97 --------------------------RFIR--KVYEKKGTEGQEETRKAFDFMLSHVGSD 128
++IR K E +G E+ R F L ++G D
Sbjct: 180 LEVRYDELDRASAIWERCVTCHPVPKQWIRWAKFEEDRGN--LEKARIVFQMALDYIGED 237
Query: 129 ----------------------------------------ISSGPIWLEYITFLKSLPAL 148
S I+ Y F K +
Sbjct: 238 EDAMEKAQSVFTAFAKMETRLKEYERARVIYKYALERLPRSKSEGIYSSYTRFEKQFGTM 297
Query: 149 NAQEES---QRMIAIRK--AYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQS 203
N+ E++ +R I + A Q A P + W DY E R LL+ S
Sbjct: 298 NSVEDTVIGKRRIQYEEELAAQEAGGAPADY--DTWFDYSRLEEDAYR----ALLATGGS 351
Query: 204 KYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWI-AWKRLLTFEKGNPQRIDTAS 262
+ +AV R R+ Y I VP + ++ +++I W R FE+ IDT
Sbjct: 352 QDQLQQAVKRVREVYERAI----AQVPSSQEKRDWRRYIFLWLRYALFEE-----IDTRD 402
Query: 263 SNK-RIIFTYEQCLM--YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR 319
++ R I+ L+ + + +W YA + + + AA K+ A+ P ++
Sbjct: 403 YDRTREIYKAAIALVPHRRFTFAKLWVQYARFEVRRLELTAARKILGAAIGMAPKLKLFS 462
Query: 320 YAFAELEESRGAIAAAKKLYESLLT-DSVNTTALAHIQFIRF 360
++ ELE S A+K+YE L D N+ ++RF
Sbjct: 463 -SYIELEVSLKEFDRARKIYEKALEWDPTNSQT-----WVRF 498
Score = 33.1 bits (74), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 108/480 (22%), Positives = 182/480 (37%), Gaps = 83/480 (17%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQV-PLWRCYIRF---- 98
IYE+ L V P W +Y E + + N + L+ R + I ++ LW Y+
Sbjct: 92 IYERALDVEPHHLPLWLRYTEQELKMRNVQHARNLYDRAVSILPRIDQLWYKYVHLEELL 151
Query: 99 -----IRKVYEK-KGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQE 152
R+V+E+ E +E+ A+ + + IW +T P
Sbjct: 152 GNIPGTRQVFERWMKWEPEEKAWHAYINLEVRYDELDRASAIWERCVT---CHPVPKQWI 208
Query: 153 ESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVY 212
+ R ++A + ++ + +D + E + S A + +Y AR +Y
Sbjct: 209 RWAKFEEDRGNLEKARIVFQMALDYIGEDEDAMEKAQSVFTAFAKMETRLKEYERARVIY 268
Query: 213 RERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK--GNPQRI-DTASSNKRIIF 269
KY E +P + S E + ++ R FEK G + DT +RI +
Sbjct: 269 ----KYALE------RLPRSKS---EGIYSSYTR---FEKQFGTMNSVEDTVIGKRRIQY 312
Query: 270 TYEQCLMYLYHYP---DIWYDYATWN--------AKSGSID---AAIK----VFQRALKA 311
E P D W+DY+ A GS D A+K V++RA+
Sbjct: 313 EEELAAQEAGGAPADYDTWFDYSRLEEDAYRALLATGGSQDQLQQAVKRVREVYERAIAQ 372
Query: 312 LPDSE-----------MLRYAFAELEESRGAIAAAKKLYE---SLLTDSVNTTALAHIQF 357
+P S+ LRYA E ++R +++Y+ +L+ T A +Q+
Sbjct: 373 VPSSQEKRDWRRYIFLWLRYALFEEIDTRD-YDRTREIYKAAIALVPHRRFTFAKLWVQY 431
Query: 358 IRFLRRTEGVEAARKYFLDAR----KSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 413
RF R + AARK A K F+ ++ + +L F + A ++E L
Sbjct: 432 ARFEVRRLELTAARKILGAAIGMAPKLKLFSSYIELEVSLKEFDR------ARKIYEKAL 485
Query: 414 KRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIE-------VWKRFTQFE 466
+ + +A+ L D RALFE + E+ VWK + FE
Sbjct: 486 EWDPTNSQTWVRFAELEKNLFDTDRARALFELGVGQAEGGEASGGLDMPEIVWKAYIDFE 545
>sp|Q4WVF4|SYF1_ASPFU Pre-mRNA-splicing factor syf1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=syf1 PE=3
SV=1
Length = 839
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 26/174 (14%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLI---CLQVP---- 90
+A +YEQ L P + K W Y+E Y N L+ + ++ C Q+P
Sbjct: 14 IADQDTVYEQDLFRAPGSIKPWLAYIE-YKQQNG-----TLYEQAFVMERACKQLPRSYK 67
Query: 91 LWRCYIRF-IRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGP-IWLEYITFLKSLPAL 148
LW+ Y+ F I + + T+ + E +K + + ++ P IW Y++FL P +
Sbjct: 68 LWKMYLEFRINHLRGRNATKYRAEYQKV-NALFERALILLNKMPKIWEMYLSFLLQQPLV 126
Query: 149 NAQEESQRMIAIRKAYQRAV-VTPTHHVEQLWKDYENFENSVSRQLAKGLLSEY 201
R+ + RA+ P ++WK Y+ F S S Q A + + Y
Sbjct: 127 T---------QTRRTFDRALRALPITQHNRIWKLYKAFARSASGQTAVKIWARY 171
>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
Length = 1862
Score = 40.4 bits (93), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 44/196 (22%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALP---DSEMLRY--AFAELEESRGAIAAAKKL 338
+W Y ++ ++ I+ A V +RALK + + E L A LE G+ + K+
Sbjct: 1612 LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKV 1671
Query: 339 YESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ 398
+E + + H+ I + +
Sbjct: 1672 FERAVQYNEPLKVFLHLADI-------------------------------------YTK 1694
Query: 399 DKDPKLAHNVFEAGLKRFMHEPAYILEYADF-LSRLNDDRNIRALFERALSSLPPEESIE 457
+ K A ++ LKRF E A ++Y F L R + R L +RAL LP +E ++
Sbjct: 1695 SEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVL-QRALECLPAKEHVD 1753
Query: 458 VWKRFTQFEQMYGDLD 473
V +F Q E GD++
Sbjct: 1754 VIVKFAQLEFQLGDVE 1769
Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR--YAFAELEES 328
Y + L +W Y + A+ +V QRAL+ LP E + FA+LE
Sbjct: 1705 YNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQ 1764
Query: 329 RGAIAAAKKLYESLLT 344
G + AK ++E+ L+
Sbjct: 1765 LGDVERAKAIFENTLS 1780
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 424 LEYADFLSRLNDDRNIRALFERALSSLP---PEESIEVWKRFTQFEQMYGDLDSTLKVEQ 480
L+Y F + + RA+ ERAL ++ +E + VW E MYG +S KV +
Sbjct: 1614 LQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFE 1673
Query: 481 R 481
R
Sbjct: 1674 R 1674
Score = 33.1 bits (74), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
V +A I+E LS +P W Y++ + + A + +F R + + L + + +
Sbjct: 1768 VERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFK 1827
Query: 98 FIRKVYEKKGTEGQEETRKA 117
++ GTE + KA
Sbjct: 1828 RYLDYEKQHGTEKDVQAVKA 1847
>sp|P39682|PRP39_YEAST Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1
Length = 629
Score = 40.0 bits (92), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 55/307 (17%), Positives = 119/307 (38%), Gaps = 30/307 (9%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEA-YMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKV 102
I Q+L +P FWK++ Y + L + + LW Y+ V
Sbjct: 76 ILWQILRKYPLLFGFWKRFATIEYQLFGLKKSIAVLATSVKWFPTSLELWCDYLN----V 131
Query: 103 YEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRK 162
+ R F+ +G S P W ++I F + + +++
Sbjct: 132 LCVNNPNETDFIRNNFEIAKDLIGKQFLSHPFWDKFIEF---------EVGQKNWHNVQR 182
Query: 163 AYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEI 222
Y+ + P H + + Y+ F N + + + + + T+ +++ K +
Sbjct: 183 IYEYIIEVPLHQYARFFTSYKKFLNEKNLKTTRNIDIVLRKTQTTVNEIWQFESKIKQPF 242
Query: 223 DWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYP 282
+N+ V ++ + W R L F + +D + ++ +++CL+ ++
Sbjct: 243 -FNLGQV-----LNDDLE--NWSRYLKFVTDPSKSLD----KEFVMSVFDRCLIPCLYHE 290
Query: 283 DIWYDYATW-NAKSGSIDAAIKVFQRALKALP-DSEMLRYAFAELEESRGAIAAAKKLYE 340
+ W Y W K+ S + + ++Q+A LP D + LRY F L + + L+
Sbjct: 291 NTWMMYIKWLTKKNISDEVVVDIYQKANTFLPLDFKTLRYDF--LRFLKRKYRSNNTLFN 348
Query: 341 SLLTDSV 347
++ ++V
Sbjct: 349 NIFNETV 355
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 280,385,233
Number of Sequences: 539616
Number of extensions: 11848495
Number of successful extensions: 38177
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 37198
Number of HSP's gapped (non-prelim): 727
length of query: 770
length of database: 191,569,459
effective HSP length: 125
effective length of query: 645
effective length of database: 124,117,459
effective search space: 80055761055
effective search space used: 80055761055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)