Query 004187
Match_columns 770
No_of_seqs 325 out of 2440
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 19:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1914 mRNA cleavage and poly 100.0 7E-100 1E-104 804.5 61.3 614 11-669 10-648 (656)
2 COG5107 RNA14 Pre-mRNA 3'-end 100.0 3.3E-54 7.2E-59 447.2 46.7 488 10-512 31-549 (660)
3 KOG1915 Cell cycle control pro 100.0 1.5E-45 3.3E-50 384.9 44.5 476 9-541 61-629 (677)
4 KOG1915 Cell cycle control pro 100.0 2.4E-36 5.2E-41 316.2 46.5 497 8-532 94-671 (677)
5 KOG2047 mRNA splicing factor [ 100.0 6.2E-34 1.3E-38 307.5 42.3 493 10-524 16-652 (835)
6 PF05843 Suf: Suppressor of fo 100.0 1.6E-36 3.5E-41 320.7 17.1 276 351-661 1-280 (280)
7 KOG0495 HAT repeat protein [RN 100.0 8.3E-31 1.8E-35 283.5 44.6 413 18-488 344-785 (913)
8 KOG1258 mRNA processing protei 100.0 8.1E-29 1.8E-33 270.4 44.2 443 18-486 27-545 (577)
9 KOG0495 HAT repeat protein [RN 100.0 3.2E-28 7E-33 263.6 38.0 369 19-488 512-883 (913)
10 KOG2047 mRNA splicing factor [ 100.0 8.2E-26 1.8E-30 244.9 43.0 422 43-487 14-581 (835)
11 KOG4626 O-linked N-acetylgluco 99.9 2.8E-24 6E-29 231.8 34.4 391 10-465 105-499 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 3.4E-24 7.3E-29 231.1 32.2 361 10-432 139-502 (966)
13 TIGR02917 PEP_TPR_lipo putativ 99.9 6.5E-22 1.4E-26 241.8 49.9 412 10-487 454-868 (899)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 1.8E-21 3.9E-26 237.9 51.5 412 10-487 420-834 (899)
15 TIGR00990 3a0801s09 mitochondr 99.9 9.1E-20 2E-24 215.1 48.5 404 28-487 132-573 (615)
16 PRK11447 cellulose synthase su 99.9 1.4E-19 3.1E-24 227.2 51.0 407 33-486 280-741 (1157)
17 PRK11447 cellulose synthase su 99.9 1.7E-19 3.8E-24 226.4 50.7 418 18-482 57-555 (1157)
18 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-19 6.7E-24 210.7 49.0 399 57-487 128-539 (615)
19 KOG0128 RNA-binding protein SA 99.9 2.7E-19 5.9E-24 200.4 41.9 428 18-482 108-560 (881)
20 PRK15174 Vi polysaccharide exp 99.9 2.7E-18 5.8E-23 202.9 41.4 329 31-420 51-386 (656)
21 PRK10049 pgaA outer membrane p 99.9 1.5E-17 3.2E-22 200.4 47.8 412 18-487 13-458 (765)
22 PRK15174 Vi polysaccharide exp 99.8 1E-17 2.2E-22 197.9 43.1 335 56-451 42-383 (656)
23 PRK10049 pgaA outer membrane p 99.8 2.7E-17 5.8E-22 198.2 44.7 389 18-452 44-459 (765)
24 KOG2396 HAT (Half-A-TPR) repea 99.8 6.4E-17 1.4E-21 172.9 38.8 418 39-487 88-561 (568)
25 KOG1914 mRNA cleavage and poly 99.8 5.7E-17 1.2E-21 174.2 36.8 400 46-485 10-464 (656)
26 KOG1070 rRNA processing protei 99.8 8.3E-19 1.8E-23 204.0 17.3 211 299-532 1441-1655(1710)
27 PRK09782 bacteriophage N4 rece 99.8 1.2E-14 2.6E-19 176.2 52.2 214 267-487 495-708 (987)
28 KOG0547 Translocase of outer m 99.8 2.1E-15 4.5E-20 160.5 38.9 416 34-486 127-567 (606)
29 KOG1070 rRNA processing protei 99.8 5.6E-17 1.2E-21 189.0 27.2 236 242-487 1459-1702(1710)
30 PRK09782 bacteriophage N4 rece 99.8 4.5E-15 9.8E-20 179.9 44.1 379 18-487 338-742 (987)
31 KOG2002 TPR-containing nuclear 99.7 3.5E-14 7.6E-19 162.2 38.1 400 36-487 321-747 (1018)
32 KOG1258 mRNA processing protei 99.7 2.4E-14 5.3E-19 157.5 35.2 399 44-472 20-491 (577)
33 PLN03218 maturation of RBCL 1; 99.7 8.2E-13 1.8E-17 161.4 52.3 411 18-487 365-785 (1060)
34 KOG2396 HAT (Half-A-TPR) repea 99.7 1.4E-13 3.1E-18 147.5 38.9 394 18-451 100-561 (568)
35 PRK11788 tetratricopeptide rep 99.7 7.3E-14 1.6E-18 155.6 37.1 163 284-448 182-346 (389)
36 KOG0547 Translocase of outer m 99.7 8.2E-14 1.8E-18 148.5 34.9 219 282-507 326-550 (606)
37 COG3063 PilF Tfp pilus assembl 99.7 5.8E-15 1.2E-19 144.6 23.8 202 283-488 36-239 (250)
38 PRK11788 tetratricopeptide rep 99.7 1.9E-13 4.1E-18 152.2 36.9 217 265-484 124-346 (389)
39 PLN03081 pentatricopeptide (PP 99.7 1.2E-13 2.6E-18 165.6 37.5 100 21-129 121-222 (697)
40 PLN03081 pentatricopeptide (PP 99.7 5.3E-13 1.2E-17 160.0 42.5 408 22-487 86-525 (697)
41 PLN03077 Protein ECB2; Provisi 99.7 5.2E-13 1.1E-17 163.9 43.2 407 21-487 251-688 (857)
42 KOG1155 Anaphase-promoting com 99.7 1.2E-12 2.6E-17 139.0 39.3 218 266-485 314-536 (559)
43 PRK14574 hmsH outer membrane p 99.7 2.6E-12 5.7E-17 153.1 47.1 438 18-487 29-515 (822)
44 PF13429 TPR_15: Tetratricopep 99.7 6E-16 1.3E-20 164.6 13.5 168 281-450 109-278 (280)
45 PLN03218 maturation of RBCL 1; 99.7 8.2E-12 1.8E-16 152.7 49.9 369 22-449 405-783 (1060)
46 KOG1126 DNA-binding cell divis 99.6 3.9E-14 8.4E-19 156.8 23.8 214 270-487 409-622 (638)
47 TIGR02521 type_IV_pilW type IV 99.6 1.7E-13 3.6E-18 139.4 27.0 202 281-486 30-233 (234)
48 KOG1155 Anaphase-promoting com 99.6 1.9E-11 4.1E-16 130.1 41.0 184 264-449 346-536 (559)
49 PLN03077 Protein ECB2; Provisi 99.6 2.9E-12 6.4E-17 157.3 40.8 212 266-486 507-721 (857)
50 KOG2002 TPR-containing nuclear 99.6 1E-11 2.3E-16 142.3 41.4 397 38-486 146-594 (1018)
51 PRK12370 invasion protein regu 99.6 1.4E-13 3.1E-18 160.0 27.2 218 263-486 276-503 (553)
52 KOG0128 RNA-binding protein SA 99.6 7.7E-12 1.7E-16 141.2 38.9 411 38-487 95-528 (881)
53 COG5107 RNA14 Pre-mRNA 3'-end 99.6 5.3E-12 1.1E-16 133.4 34.5 401 44-487 30-497 (660)
54 KOG1126 DNA-binding cell divis 99.6 6E-13 1.3E-17 147.5 28.3 287 37-420 334-625 (638)
55 PRK14574 hmsH outer membrane p 99.6 1.1E-10 2.4E-15 139.4 46.5 404 10-454 57-518 (822)
56 TIGR02521 type_IV_pilW type IV 99.5 2.5E-12 5.5E-17 130.7 25.0 187 263-450 46-233 (234)
57 PF13429 TPR_15: Tetratricopep 99.5 5.2E-14 1.1E-18 149.7 12.6 218 264-486 60-278 (280)
58 KOG2076 RNA polymerase III tra 99.5 1.5E-10 3.2E-15 132.3 40.6 348 35-438 152-544 (895)
59 PRK12370 invasion protein regu 99.5 7.4E-12 1.6E-16 145.8 29.8 208 262-475 318-526 (553)
60 KOG2003 TPR repeat-containing 99.5 5.5E-10 1.2E-14 118.0 38.5 215 268-487 476-691 (840)
61 KOG2076 RNA polymerase III tra 99.5 9.2E-11 2E-15 133.9 34.0 364 8-414 160-554 (895)
62 COG3063 PilF Tfp pilus assembl 99.4 1.4E-11 3E-16 121.1 21.2 188 263-451 50-238 (250)
63 TIGR00540 hemY_coli hemY prote 99.4 7.1E-10 1.5E-14 124.5 37.8 289 35-414 97-398 (409)
64 KOG1173 Anaphase-promoting com 99.4 4.4E-09 9.5E-14 115.0 40.7 216 268-487 298-520 (611)
65 PRK11189 lipoprotein NlpI; Pro 99.4 3.1E-11 6.8E-16 129.3 23.9 199 263-470 79-285 (296)
66 PRK11189 lipoprotein NlpI; Pro 99.4 6.5E-11 1.4E-15 126.9 26.0 216 265-487 43-267 (296)
67 TIGR00540 hemY_coli hemY prote 99.4 6.2E-10 1.3E-14 125.0 33.1 217 265-487 135-401 (409)
68 KOG1129 TPR repeat-containing 99.4 2.4E-11 5.1E-16 124.0 17.9 225 263-492 238-465 (478)
69 PRK10747 putative protoheme IX 99.3 5.6E-09 1.2E-13 116.7 36.7 135 276-416 257-391 (398)
70 PLN02789 farnesyltranstransfer 99.3 6.4E-10 1.4E-14 119.5 26.3 188 263-451 52-252 (320)
71 PRK10747 putative protoheme IX 99.3 1.2E-09 2.5E-14 122.3 28.1 218 263-487 133-392 (398)
72 KOG1173 Anaphase-promoting com 99.3 4.2E-09 9.1E-14 115.1 29.7 185 265-451 329-520 (611)
73 KOG1156 N-terminal acetyltrans 99.3 1.7E-07 3.7E-12 104.2 42.3 425 20-487 5-513 (700)
74 KOG4162 Predicted calmodulin-b 99.3 5.5E-08 1.2E-12 110.0 38.9 415 21-487 321-785 (799)
75 KOG1125 TPR repeat-containing 99.2 4.3E-10 9.3E-15 123.3 20.3 215 264-484 301-526 (579)
76 KOG1174 Anaphase-promoting com 99.2 8.7E-09 1.9E-13 108.5 29.0 203 263-470 315-519 (564)
77 KOG0624 dsRNA-activated protei 99.2 2.8E-08 6.1E-13 102.5 29.4 323 18-451 33-372 (504)
78 PF05843 Suf: Suppressor of fo 99.2 2.9E-10 6.2E-15 120.7 15.0 133 318-452 3-139 (280)
79 TIGR03302 OM_YfiO outer membra 99.2 2.3E-09 5.1E-14 110.8 21.0 192 278-487 29-234 (235)
80 PLN02789 farnesyltranstransfer 99.2 3.6E-09 7.8E-14 113.8 21.7 182 283-468 38-229 (320)
81 PRK15179 Vi polysaccharide bio 99.1 4.2E-09 9.2E-14 123.8 23.0 165 285-451 52-219 (694)
82 PRK15359 type III secretion sy 99.1 1.6E-09 3.5E-14 103.1 15.2 122 269-394 14-135 (144)
83 KOG0548 Molecular co-chaperone 99.1 3.6E-07 7.8E-12 100.0 34.8 399 32-452 12-458 (539)
84 COG2956 Predicted N-acetylgluc 99.1 3.6E-08 7.7E-13 101.4 25.0 219 265-487 52-280 (389)
85 KOG1125 TPR repeat-containing 99.1 4.6E-09 9.9E-14 115.4 19.7 198 286-488 289-496 (579)
86 PRK15359 type III secretion sy 99.1 2.5E-09 5.4E-14 101.9 15.4 125 302-431 13-137 (144)
87 COG2956 Predicted N-acetylgluc 99.1 2.3E-07 4.9E-12 95.6 30.2 201 263-468 122-327 (389)
88 KOG3060 Uncharacterized conser 99.1 4.2E-08 9E-13 97.9 23.9 167 283-451 50-222 (289)
89 cd05804 StaR_like StaR_like; a 99.1 2.1E-08 4.6E-13 110.2 24.1 205 278-484 2-214 (355)
90 KOG1129 TPR repeat-containing 99.1 6.3E-10 1.4E-14 113.8 10.1 187 263-451 271-460 (478)
91 PRK15179 Vi polysaccharide bio 99.1 8.9E-09 1.9E-13 121.1 21.3 143 276-420 80-222 (694)
92 KOG1127 TPR repeat-containing 99.0 3.1E-07 6.7E-12 106.1 31.9 442 12-487 483-998 (1238)
93 PRK10370 formate-dependent nit 99.0 2E-08 4.4E-13 100.9 19.5 123 330-453 53-177 (198)
94 KOG2003 TPR repeat-containing 99.0 1.9E-06 4.1E-11 91.8 34.6 207 261-471 503-709 (840)
95 PRK10370 formate-dependent nit 99.0 6.8E-09 1.5E-13 104.3 16.0 119 264-383 55-176 (198)
96 KOG0548 Molecular co-chaperone 99.0 9E-07 1.9E-11 96.9 31.8 176 263-448 313-488 (539)
97 PF12569 NARP1: NMDA receptor- 99.0 3E-06 6.4E-11 96.6 37.1 303 34-416 16-335 (517)
98 KOG1840 Kinesin light chain [C 99.0 8.8E-08 1.9E-12 107.8 24.0 224 263-487 214-481 (508)
99 KOG1127 TPR repeat-containing 99.0 5.7E-07 1.2E-11 104.0 30.2 210 265-477 800-1028(1238)
100 KOG4162 Predicted calmodulin-b 99.0 7.5E-06 1.6E-10 93.1 38.4 366 46-487 313-751 (799)
101 TIGR03302 OM_YfiO outer membra 99.0 6.5E-08 1.4E-12 100.0 20.6 157 313-488 30-198 (235)
102 KOG0624 dsRNA-activated protei 99.0 6.6E-08 1.4E-12 99.8 19.8 201 284-487 40-254 (504)
103 KOG1174 Anaphase-promoting com 98.9 2.8E-07 6.1E-12 97.4 23.1 257 265-528 249-515 (564)
104 TIGR02552 LcrH_SycD type III s 98.9 5.2E-08 1.1E-12 91.3 15.5 113 270-383 5-117 (135)
105 TIGR02552 LcrH_SycD type III s 98.9 5.7E-08 1.2E-12 91.1 15.8 119 303-423 4-122 (135)
106 KOG3060 Uncharacterized conser 98.9 4.5E-07 9.7E-12 90.7 22.1 157 267-424 71-229 (289)
107 PRK14720 transcript cleavage f 98.9 1.7E-07 3.7E-12 111.3 22.3 222 277-508 26-271 (906)
108 COG5010 TadD Flp pilus assembl 98.8 2.6E-07 5.5E-12 93.2 19.6 178 268-448 53-230 (257)
109 cd05804 StaR_like StaR_like; a 98.8 2.7E-07 5.8E-12 101.4 21.6 182 268-451 26-217 (355)
110 KOG1128 Uncharacterized conser 98.8 4.3E-08 9.3E-13 110.2 13.9 150 353-507 487-636 (777)
111 KOG1840 Kinesin light chain [C 98.8 5.8E-07 1.3E-11 101.3 21.4 214 278-493 195-446 (508)
112 COG5010 TadD Flp pilus assembl 98.8 8.9E-07 1.9E-11 89.4 20.1 174 300-478 51-224 (257)
113 KOG2376 Signal recognition par 98.8 0.00079 1.7E-08 75.0 44.1 427 23-487 13-489 (652)
114 KOG1156 N-terminal acetyltrans 98.7 1.4E-06 3E-11 97.2 22.7 220 262-487 55-285 (700)
115 PF12569 NARP1: NMDA receptor- 98.7 9.5E-06 2.1E-10 92.5 29.8 136 352-488 193-337 (517)
116 PF08424 NRDE-2: NRDE-2, neces 98.7 2.4E-07 5.2E-12 100.3 15.8 149 8-170 6-183 (321)
117 PRK14720 transcript cleavage f 98.7 2.8E-06 6.1E-11 101.1 25.2 197 241-451 31-254 (906)
118 COG4783 Putative Zn-dependent 98.6 3.7E-06 7.9E-11 91.6 20.5 154 279-451 303-456 (484)
119 cd00189 TPR Tetratricopeptide 98.5 1.7E-06 3.8E-11 73.3 12.2 97 284-381 2-98 (100)
120 KOG1128 Uncharacterized conser 98.5 4E-06 8.6E-11 94.8 17.5 119 328-448 497-615 (777)
121 PRK15363 pathogenicity island 98.5 2.6E-06 5.7E-11 80.6 12.9 102 279-381 32-133 (157)
122 TIGR02795 tol_pal_ybgF tol-pal 98.4 4.6E-06 1E-10 75.7 13.6 103 282-384 2-109 (119)
123 COG4783 Putative Zn-dependent 98.4 5.5E-05 1.2E-09 82.6 23.6 134 313-448 303-436 (484)
124 PLN03088 SGT1, suppressor of 98.4 4.7E-06 1E-10 91.6 15.7 90 289-379 9-98 (356)
125 PF13414 TPR_11: TPR repeat; P 98.4 1.4E-06 3E-11 71.5 8.6 67 281-347 2-69 (69)
126 PRK15363 pathogenicity island 98.4 3.9E-06 8.5E-11 79.4 12.6 104 313-418 32-135 (157)
127 COG3071 HemY Uncharacterized e 98.4 0.0015 3.3E-08 69.8 33.2 196 283-485 154-390 (400)
128 COG3071 HemY Uncharacterized e 98.4 0.0027 5.9E-08 67.9 34.9 141 269-415 250-390 (400)
129 KOG2376 Signal recognition par 98.3 0.0065 1.4E-07 68.0 37.5 191 282-477 307-512 (652)
130 cd00189 TPR Tetratricopeptide 98.3 6.6E-06 1.4E-10 69.7 11.7 98 353-451 2-99 (100)
131 PLN03088 SGT1, suppressor of 98.3 9.4E-06 2E-10 89.3 15.4 91 360-451 11-101 (356)
132 PF08424 NRDE-2: NRDE-2, neces 98.3 2.4E-05 5.1E-10 84.8 18.0 110 269-379 6-130 (321)
133 KOG0553 TPR repeat-containing 98.3 6.5E-06 1.4E-10 84.7 12.5 106 328-435 93-198 (304)
134 KOG0553 TPR repeat-containing 98.3 8.2E-06 1.8E-10 84.0 12.7 95 290-385 89-183 (304)
135 KOG0550 Molecular chaperone (D 98.3 1.5E-05 3.2E-10 84.9 14.6 168 283-451 170-352 (486)
136 COG5191 Uncharacterized conser 98.3 9.3E-07 2E-11 90.3 5.5 93 44-144 95-188 (435)
137 PF09976 TPR_21: Tetratricopep 98.2 2.9E-05 6.2E-10 74.0 14.9 111 266-378 29-145 (145)
138 COG4235 Cytochrome c biogenesi 98.2 2.8E-05 6.2E-10 80.6 15.6 118 264-382 138-258 (287)
139 PRK02603 photosystem I assembl 98.2 4.6E-05 9.9E-10 74.8 16.6 118 280-419 33-153 (172)
140 PF09976 TPR_21: Tetratricopep 98.2 4.4E-05 9.4E-10 72.7 15.9 116 295-412 24-144 (145)
141 PF04733 Coatomer_E: Coatomer 98.2 2.4E-05 5.2E-10 83.3 14.8 197 283-487 67-267 (290)
142 PRK10153 DNA-binding transcrip 98.2 7.2E-05 1.6E-09 85.9 19.0 141 277-420 332-487 (517)
143 PF13432 TPR_16: Tetratricopep 98.2 5E-06 1.1E-10 67.3 7.0 63 286-348 1-63 (65)
144 PF04733 Coatomer_E: Coatomer 98.2 2.6E-05 5.6E-10 83.1 13.7 165 281-451 101-267 (290)
145 COG5191 Uncharacterized conser 98.2 5.4E-06 1.2E-10 84.9 8.0 101 263-364 88-189 (435)
146 COG0457 NrfG FOG: TPR repeat [ 98.1 0.0027 5.8E-08 62.4 27.3 216 268-487 43-267 (291)
147 PRK11906 transcriptional regul 98.1 8.2E-05 1.8E-09 81.7 17.2 150 263-414 273-435 (458)
148 TIGR02795 tol_pal_ybgF tol-pal 98.1 4.3E-05 9.3E-10 69.2 12.8 98 353-451 4-107 (119)
149 PF13525 YfiO: Outer membrane 98.1 0.00032 7E-09 70.8 20.1 169 281-473 4-195 (203)
150 PF14938 SNAP: Soluble NSF att 98.1 7.5E-05 1.6E-09 79.5 15.8 165 285-451 38-227 (282)
151 PF14559 TPR_19: Tetratricopep 98.1 1.4E-05 3.1E-10 65.1 7.8 65 293-358 2-66 (68)
152 KOG0550 Molecular chaperone (D 98.1 0.00023 4.9E-09 76.1 18.0 213 270-486 105-351 (486)
153 PRK11906 transcriptional regul 98.0 0.00025 5.4E-09 78.0 18.6 119 298-418 274-404 (458)
154 PRK10803 tol-pal system protei 98.0 0.00012 2.6E-09 76.7 15.6 103 281-383 141-249 (263)
155 COG4235 Cytochrome c biogenesi 98.0 0.00014 3.1E-09 75.4 15.7 118 298-417 138-258 (287)
156 PRK10866 outer membrane biogen 98.0 0.00071 1.5E-08 70.3 21.0 70 280-349 30-102 (243)
157 PF12895 Apc3: Anaphase-promot 98.0 2.5E-05 5.4E-10 66.8 8.4 77 264-341 5-83 (84)
158 KOG3617 WD40 and TPR repeat-co 98.0 0.0091 2E-07 68.7 30.3 191 280-480 910-1169(1416)
159 PF12895 Apc3: Anaphase-promot 98.0 1.9E-05 4.1E-10 67.6 7.4 81 295-377 2-84 (84)
160 CHL00033 ycf3 photosystem I as 98.0 0.00012 2.6E-09 71.5 13.2 83 282-365 35-120 (168)
161 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0002 4.3E-09 79.0 16.2 110 327-441 180-289 (395)
162 PF13414 TPR_11: TPR repeat; P 97.9 3.5E-05 7.6E-10 63.0 7.7 65 315-380 2-67 (69)
163 PRK10153 DNA-binding transcrip 97.9 0.00061 1.3E-08 78.3 20.1 157 306-466 327-498 (517)
164 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00021 4.6E-09 78.7 15.3 118 288-410 175-292 (395)
165 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0031 6.6E-08 62.0 22.6 186 265-451 76-267 (291)
166 KOG3785 Uncharacterized conser 97.9 0.05 1.1E-06 57.4 30.9 87 64-172 30-122 (557)
167 PF13432 TPR_16: Tetratricopep 97.9 6.8E-05 1.5E-09 60.6 8.2 59 392-451 4-62 (65)
168 PRK02603 photosystem I assembl 97.9 0.00033 7.1E-09 68.8 14.7 98 353-451 37-151 (172)
169 CHL00033 ycf3 photosystem I as 97.9 0.00037 7.9E-09 68.1 14.5 100 351-451 35-151 (168)
170 PF13371 TPR_9: Tetratricopept 97.8 9E-05 2E-09 61.3 8.3 60 289-348 2-61 (73)
171 PF14559 TPR_19: Tetratricopep 97.8 5.8E-05 1.3E-09 61.5 7.0 64 262-325 5-68 (68)
172 PF13428 TPR_14: Tetratricopep 97.8 5.1E-05 1.1E-09 56.3 5.5 43 282-324 1-43 (44)
173 KOG0543 FKBP-type peptidyl-pro 97.8 0.0004 8.7E-09 74.6 14.1 146 285-451 211-357 (397)
174 PF12688 TPR_5: Tetratrico pep 97.8 0.00051 1.1E-08 62.9 12.9 97 283-379 2-103 (120)
175 PRK10803 tol-pal system protei 97.8 0.0008 1.7E-08 70.5 15.9 105 316-421 142-252 (263)
176 PRK04841 transcriptional regul 97.7 0.097 2.1E-06 65.2 36.8 225 263-487 506-762 (903)
177 PRK15331 chaperone protein Sic 97.7 0.00088 1.9E-08 63.9 13.3 100 282-382 37-136 (165)
178 PRK10866 outer membrane biogen 97.7 0.0089 1.9E-07 62.1 22.1 168 315-482 31-238 (243)
179 PF14938 SNAP: Soluble NSF att 97.7 0.0017 3.7E-08 69.1 17.2 176 297-487 30-227 (282)
180 COG4700 Uncharacterized protei 97.7 0.01 2.2E-07 57.3 20.0 163 298-463 72-241 (251)
181 COG4785 NlpI Lipoprotein NlpI, 97.7 0.0046 9.9E-08 61.0 18.0 195 261-467 78-281 (297)
182 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00064 1.4E-08 74.8 13.6 70 277-346 70-142 (453)
183 KOG3617 WD40 and TPR repeat-co 97.6 0.034 7.5E-07 64.3 27.1 97 282-378 858-994 (1416)
184 PF12688 TPR_5: Tetratrico pep 97.6 0.001 2.2E-08 60.9 12.6 95 353-448 3-103 (120)
185 PF13525 YfiO: Outer membrane 97.6 0.0076 1.6E-07 60.9 20.0 159 263-440 20-198 (203)
186 KOG3081 Vesicle coat complex C 97.6 0.044 9.5E-07 56.1 24.3 166 267-441 92-262 (299)
187 KOG0543 FKBP-type peptidyl-pro 97.5 0.0012 2.6E-08 71.0 13.6 144 322-488 214-358 (397)
188 PF08311 Mad3_BUB1_I: Mad3/BUB 97.5 0.0018 3.8E-08 60.0 12.3 93 241-343 22-126 (126)
189 PF13371 TPR_9: Tetratricopept 97.5 0.00051 1.1E-08 56.7 7.7 54 399-452 8-61 (73)
190 KOG3785 Uncharacterized conser 97.4 0.019 4.1E-07 60.5 20.4 141 281-424 58-223 (557)
191 PRK04841 transcriptional regul 97.4 0.017 3.6E-07 72.0 24.3 206 281-487 408-643 (903)
192 COG4700 Uncharacterized protei 97.4 0.016 3.6E-07 55.9 17.7 134 283-418 90-229 (251)
193 KOG4340 Uncharacterized conser 97.4 0.005 1.1E-07 63.4 15.2 179 293-479 21-201 (459)
194 KOG2053 Mitochondrial inherita 97.4 0.057 1.2E-06 63.4 25.2 218 263-487 24-257 (932)
195 COG4105 ComL DNA uptake lipopr 97.3 0.036 7.7E-07 56.8 20.6 182 281-487 33-235 (254)
196 KOG4555 TPR repeat-containing 97.3 0.0028 6.1E-08 57.5 11.2 96 288-383 49-147 (175)
197 PRK15331 chaperone protein Sic 97.3 0.0018 3.8E-08 61.9 10.4 97 352-449 38-134 (165)
198 KOG4340 Uncharacterized conser 97.3 0.015 3.3E-07 60.0 17.3 179 265-451 27-213 (459)
199 COG1729 Uncharacterized protei 97.3 0.0059 1.3E-07 62.9 14.6 107 285-424 144-253 (262)
200 PF04184 ST7: ST7 protein; In 97.3 0.01 2.2E-07 65.5 16.7 108 268-377 188-321 (539)
201 KOG3081 Vesicle coat complex C 97.2 0.058 1.3E-06 55.2 20.5 193 283-487 73-273 (299)
202 PF02184 HAT: HAT (Half-A-TPR) 97.2 0.00038 8.2E-09 46.9 3.1 30 71-100 2-31 (32)
203 PF13512 TPR_18: Tetratricopep 97.2 0.0093 2E-07 55.8 13.2 123 281-421 9-134 (142)
204 KOG2796 Uncharacterized conser 97.1 0.065 1.4E-06 54.6 19.5 159 320-479 181-347 (366)
205 PF13428 TPR_14: Tetratricopep 97.0 0.0015 3.3E-08 48.3 5.4 41 57-97 2-43 (44)
206 PF13281 DUF4071: Domain of un 97.0 0.086 1.9E-06 57.6 20.4 169 281-451 140-336 (374)
207 PF06552 TOM20_plant: Plant sp 97.0 0.0064 1.4E-07 58.8 10.3 86 263-348 6-112 (186)
208 PF08311 Mad3_BUB1_I: Mad3/BUB 96.9 0.011 2.4E-07 54.7 11.6 105 268-378 5-126 (126)
209 KOG4234 TPR repeat-containing 96.9 0.023 5E-07 55.5 13.2 96 291-387 104-204 (271)
210 KOG1585 Protein required for f 96.9 0.12 2.6E-06 52.2 18.4 192 285-479 34-250 (308)
211 PF13424 TPR_12: Tetratricopep 96.8 0.0017 3.8E-08 54.3 5.0 64 282-345 5-75 (78)
212 PF13431 TPR_17: Tetratricopep 96.8 0.0012 2.7E-08 45.9 3.3 32 271-302 2-33 (34)
213 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.01 2.2E-07 65.5 11.3 70 311-381 70-142 (453)
214 KOG4234 TPR repeat-containing 96.7 0.022 4.8E-07 55.6 11.4 94 262-356 109-207 (271)
215 COG3118 Thioredoxin domain-con 96.7 0.16 3.5E-06 53.0 18.4 158 283-445 135-297 (304)
216 COG4785 NlpI Lipoprotein NlpI, 96.6 0.083 1.8E-06 52.4 15.3 98 283-381 66-163 (297)
217 COG1729 Uncharacterized protei 96.6 0.03 6.6E-07 57.8 12.8 89 364-453 154-248 (262)
218 PF13512 TPR_18: Tetratricopep 96.6 0.051 1.1E-06 50.9 13.0 71 350-421 9-82 (142)
219 smart00386 HAT HAT (Half-A-TPR 96.6 0.0038 8.3E-08 42.3 4.3 29 38-66 3-31 (33)
220 PF13431 TPR_17: Tetratricopep 96.6 0.0029 6.3E-08 44.0 3.6 33 304-336 1-33 (34)
221 KOG4648 Uncharacterized conser 96.5 0.0093 2E-07 62.5 8.6 97 285-382 100-196 (536)
222 KOG1130 Predicted G-alpha GTPa 96.5 0.4 8.7E-06 51.9 20.8 97 318-415 237-344 (639)
223 PF04184 ST7: ST7 protein; In 96.5 0.13 2.8E-06 57.2 17.5 185 286-487 172-377 (539)
224 smart00777 Mad3_BUB1_I Mad3/BU 96.5 0.041 8.8E-07 50.6 11.7 91 241-341 22-124 (125)
225 KOG3616 Selective LIM binding 96.5 2.3 5E-05 49.2 27.0 48 32-80 454-501 (1636)
226 PF13424 TPR_12: Tetratricopep 96.4 0.0047 1E-07 51.6 4.9 65 315-379 4-74 (78)
227 smart00386 HAT HAT (Half-A-TPR 96.4 0.0063 1.4E-07 41.2 4.6 31 401-431 2-32 (33)
228 KOG2796 Uncharacterized conser 96.3 0.22 4.7E-06 50.9 16.0 132 286-418 181-318 (366)
229 KOG1924 RhoA GTPase effector D 96.2 1.4 3E-05 51.3 24.0 49 400-448 379-433 (1102)
230 PF02184 HAT: HAT (Half-A-TPR) 96.2 0.0061 1.3E-07 41.2 3.3 30 37-67 2-31 (32)
231 KOG4648 Uncharacterized conser 96.1 0.025 5.4E-07 59.4 9.1 108 322-431 103-210 (536)
232 PF02259 FAT: FAT domain; Int 96.1 0.69 1.5E-05 50.4 21.4 117 350-469 145-305 (352)
233 KOG1941 Acetylcholine receptor 96.1 2.5 5.4E-05 45.3 23.5 204 283-487 123-362 (518)
234 PF07719 TPR_2: Tetratricopept 96.1 0.015 3.2E-07 39.9 5.1 34 282-315 1-34 (34)
235 PF06552 TOM20_plant: Plant sp 96.1 0.068 1.5E-06 51.8 11.1 65 298-363 7-81 (186)
236 KOG3616 Selective LIM binding 96.0 4.4 9.4E-05 47.1 29.9 105 293-409 743-847 (1636)
237 KOG1130 Predicted G-alpha GTPa 96.0 0.28 6.1E-06 53.0 16.2 166 282-448 135-343 (639)
238 COG3898 Uncharacterized membra 96.0 3 6.5E-05 45.2 31.6 189 294-487 166-360 (531)
239 KOG4555 TPR repeat-containing 96.0 0.076 1.7E-06 48.5 10.1 90 324-415 51-144 (175)
240 PF00515 TPR_1: Tetratricopept 95.7 0.023 5.1E-07 39.1 4.8 34 282-315 1-34 (34)
241 COG4105 ComL DNA uptake lipopr 95.7 1 2.3E-05 46.3 18.5 158 262-420 48-238 (254)
242 KOG1941 Acetylcholine receptor 95.7 0.61 1.3E-05 49.8 17.0 202 284-487 85-342 (518)
243 KOG0530 Protein farnesyltransf 95.6 0.8 1.7E-05 47.0 16.7 183 264-447 59-251 (318)
244 KOG2610 Uncharacterized conser 95.6 0.53 1.2E-05 49.7 15.8 142 269-414 124-275 (491)
245 PF03704 BTAD: Bacterial trans 95.5 0.21 4.5E-06 47.2 12.3 55 322-377 68-122 (146)
246 PF10300 DUF3808: Protein of u 95.4 0.76 1.7E-05 52.6 18.2 173 270-447 179-374 (468)
247 KOG2471 TPR repeat-containing 95.3 0.11 2.4E-06 57.2 10.3 142 290-432 214-381 (696)
248 PF04910 Tcf25: Transcriptiona 95.3 0.71 1.5E-05 50.8 17.0 41 271-311 29-69 (360)
249 PF10300 DUF3808: Protein of u 95.3 0.47 1E-05 54.2 16.1 119 296-415 247-376 (468)
250 KOG1585 Protein required for f 95.2 1.4 2.9E-05 44.9 16.8 160 283-444 72-251 (308)
251 COG3118 Thioredoxin domain-con 95.0 1.7 3.8E-05 45.5 17.5 155 324-481 142-297 (304)
252 KOG2610 Uncharacterized conser 95.0 0.86 1.9E-05 48.2 15.2 159 289-448 110-275 (491)
253 KOG1586 Protein required for f 95.0 1.3 2.9E-05 44.7 15.9 121 330-451 87-226 (288)
254 PF03704 BTAD: Bacterial trans 94.9 0.15 3.3E-06 48.2 9.2 62 283-344 63-124 (146)
255 KOG2053 Mitochondrial inherita 94.8 12 0.00027 44.8 42.2 86 34-124 21-106 (932)
256 KOG0530 Protein farnesyltransf 94.8 2.2 4.8E-05 43.9 17.1 171 296-470 57-236 (318)
257 smart00777 Mad3_BUB1_I Mad3/BU 94.8 0.46 1E-05 43.7 11.4 101 269-375 6-123 (125)
258 KOG4642 Chaperone-dependent E3 94.7 0.1 2.3E-06 52.5 7.6 79 298-377 26-104 (284)
259 KOG0890 Protein kinase of the 94.7 22 0.00048 47.2 34.0 214 239-466 1668-1937(2382)
260 COG3898 Uncharacterized membra 94.6 8.3 0.00018 42.0 28.2 217 262-487 168-394 (531)
261 PF13174 TPR_6: Tetratricopept 94.5 0.068 1.5E-06 36.2 4.3 33 283-315 1-33 (33)
262 KOG1586 Protein required for f 94.5 3.2 6.9E-05 42.1 17.1 133 284-418 76-227 (288)
263 PF02259 FAT: FAT domain; Int 94.4 9.3 0.0002 41.5 27.3 67 278-344 142-212 (352)
264 PF13281 DUF4071: Domain of un 94.3 2.5 5.5E-05 46.3 17.7 175 316-491 141-340 (374)
265 KOG3824 Huntingtin interacting 94.2 0.18 4E-06 52.4 8.2 53 399-451 129-181 (472)
266 KOG4642 Chaperone-dependent E3 94.1 1 2.2E-05 45.7 12.9 99 37-141 25-126 (284)
267 PF13181 TPR_8: Tetratricopept 93.9 0.11 2.4E-06 35.5 4.3 32 283-314 2-33 (34)
268 PF04910 Tcf25: Transcriptiona 93.8 4 8.6E-05 45.0 18.4 141 308-451 32-224 (360)
269 COG2976 Uncharacterized protei 93.7 2.9 6.3E-05 41.3 14.9 115 302-418 72-191 (207)
270 PF07719 TPR_2: Tetratricopept 93.6 0.16 3.5E-06 34.6 4.8 32 57-88 2-33 (34)
271 PF00515 TPR_1: Tetratricopept 93.5 0.16 3.4E-06 34.8 4.4 32 317-348 2-33 (34)
272 KOG3824 Huntingtin interacting 93.5 0.23 4.9E-06 51.7 7.3 68 289-357 123-190 (472)
273 PF14561 TPR_20: Tetratricopep 92.7 0.85 1.8E-05 39.5 8.8 73 269-341 9-83 (90)
274 KOG1308 Hsp70-interacting prot 92.5 0.13 2.9E-06 54.4 4.1 85 294-379 126-210 (377)
275 KOG0545 Aryl-hydrocarbon recep 92.3 4.1 8.9E-05 41.6 14.0 99 284-383 180-296 (329)
276 PF08631 SPO22: Meiosis protei 92.1 7 0.00015 41.4 16.9 62 401-462 102-164 (278)
277 COG2976 Uncharacterized protei 92.0 1.3 2.9E-05 43.6 10.0 97 284-382 91-190 (207)
278 KOG0376 Serine-threonine phosp 91.5 0.4 8.8E-06 53.1 6.6 86 297-383 19-104 (476)
279 KOG1920 IkappaB kinase complex 91.4 46 0.00099 41.5 29.1 38 270-307 923-964 (1265)
280 PF13181 TPR_8: Tetratricopept 91.3 0.32 6.8E-06 33.2 3.7 31 317-347 2-32 (34)
281 COG4976 Predicted methyltransf 91.3 0.27 5.8E-06 49.4 4.4 60 289-348 2-61 (287)
282 KOG1924 RhoA GTPase effector D 91.0 25 0.00055 41.5 20.1 21 358-378 372-392 (1102)
283 KOG1538 Uncharacterized conser 91.0 22 0.00047 41.2 19.3 97 270-378 735-831 (1081)
284 PF13174 TPR_6: Tetratricopept 90.4 0.52 1.1E-05 31.7 4.1 31 387-418 2-32 (33)
285 KOG0376 Serine-threonine phosp 90.3 0.44 9.5E-06 52.9 5.5 99 328-428 16-114 (476)
286 smart00028 TPR Tetratricopepti 89.9 0.53 1.1E-05 30.3 3.9 32 283-314 2-33 (34)
287 PF10345 Cohesin_load: Cohesin 89.7 35 0.00076 40.5 21.4 176 268-444 41-249 (608)
288 KOG2422 Uncharacterized conser 89.2 14 0.00031 42.2 16.0 141 278-418 280-451 (665)
289 PF13176 TPR_7: Tetratricopept 89.2 0.77 1.7E-05 32.1 4.3 25 285-309 2-26 (36)
290 KOG0551 Hsp90 co-chaperone CNS 89.0 7.3 0.00016 41.6 12.9 90 358-448 88-181 (390)
291 KOG0545 Aryl-hydrocarbon recep 88.7 6.7 0.00014 40.1 11.9 98 353-451 180-295 (329)
292 PF04053 Coatomer_WDAD: Coatom 88.7 12 0.00026 42.5 15.6 133 282-445 295-427 (443)
293 PF10602 RPN7: 26S proteasome 88.3 5.5 0.00012 39.1 11.2 63 283-345 37-102 (177)
294 KOG2422 Uncharacterized conser 88.1 22 0.00047 40.8 16.6 154 297-451 253-450 (665)
295 PF13176 TPR_7: Tetratricopept 88.0 0.77 1.7E-05 32.1 3.6 26 319-344 2-27 (36)
296 KOG0985 Vesicle coat protein c 87.6 80 0.0017 38.9 28.3 116 353-470 1281-1414(1666)
297 KOG2471 TPR repeat-containing 87.4 3.5 7.5E-05 45.9 9.8 138 324-465 214-378 (696)
298 KOG1550 Extracellular protein 87.4 28 0.0006 40.9 18.2 116 296-416 263-394 (552)
299 KOG0551 Hsp90 co-chaperone CNS 87.3 9.2 0.0002 40.8 12.4 92 324-416 89-183 (390)
300 COG2909 MalT ATP-dependent tra 87.2 79 0.0017 38.4 22.7 218 269-487 397-649 (894)
301 PF07079 DUF1347: Protein of u 86.8 16 0.00034 40.7 14.3 84 365-449 59-157 (549)
302 KOG2300 Uncharacterized conser 86.8 60 0.0013 36.6 38.4 168 293-462 334-529 (629)
303 KOG0985 Vesicle coat protein c 86.8 65 0.0014 39.6 20.0 176 279-469 1101-1326(1666)
304 KOG3807 Predicted membrane pro 86.2 13 0.00028 39.5 12.8 121 283-418 185-307 (556)
305 KOG1308 Hsp70-interacting prot 86.0 0.53 1.1E-05 50.0 2.7 86 263-348 129-214 (377)
306 COG1747 Uncharacterized N-term 85.3 74 0.0016 36.2 20.6 61 281-343 98-158 (711)
307 PF14561 TPR_20: Tetratricopep 84.5 8.6 0.00019 33.2 9.1 78 406-483 8-85 (90)
308 COG3629 DnrI DNA-binding trans 84.3 5.7 0.00012 41.8 9.3 62 37-98 168-236 (280)
309 KOG1550 Extracellular protein 83.6 50 0.0011 38.7 17.9 174 299-484 229-425 (552)
310 PRK10941 hypothetical protein; 83.4 11 0.00024 39.6 11.2 62 288-349 187-248 (269)
311 KOG1538 Uncharacterized conser 83.4 34 0.00075 39.6 15.2 45 400-448 787-832 (1081)
312 PF09986 DUF2225: Uncharacteri 82.8 20 0.00043 36.4 12.4 52 333-384 142-198 (214)
313 smart00028 TPR Tetratricopepti 82.5 2.6 5.7E-05 26.7 4.2 30 318-347 3-32 (34)
314 KOG4507 Uncharacterized conser 81.7 7.3 0.00016 44.4 9.2 99 323-422 613-712 (886)
315 PF11207 DUF2989: Protein of u 81.5 23 0.0005 35.3 11.8 73 366-440 121-198 (203)
316 PF10602 RPN7: 26S proteasome 80.8 7.4 0.00016 38.2 8.2 66 422-487 38-104 (177)
317 COG2909 MalT ATP-dependent tra 79.6 1.2E+02 0.0025 37.0 18.5 195 287-481 463-684 (894)
318 COG3629 DnrI DNA-binding trans 79.5 7.5 0.00016 41.0 8.1 62 283-344 154-215 (280)
319 KOG0529 Protein geranylgeranyl 79.4 40 0.00086 37.2 13.6 135 297-432 90-241 (421)
320 PF14853 Fis1_TPR_C: Fis1 C-te 79.2 12 0.00026 28.8 7.1 39 283-321 2-40 (53)
321 KOG1166 Mitotic checkpoint ser 78.1 22 0.00048 44.0 12.6 121 242-366 35-164 (974)
322 KOG0890 Protein kinase of the 78.1 2.7E+02 0.0058 37.8 28.6 99 350-451 1669-1786(2382)
323 KOG2300 Uncharacterized conser 77.9 1.3E+02 0.0028 34.1 17.8 143 281-424 366-527 (629)
324 KOG0529 Protein geranylgeranyl 77.8 17 0.00037 40.0 10.3 129 12-143 100-240 (421)
325 PF13041 PPR_2: PPR repeat fam 76.9 9 0.0002 28.6 5.9 41 56-96 3-45 (50)
326 PF14929 TAF1_subA: TAF RNA Po 76.3 66 0.0014 37.4 15.2 121 364-487 322-447 (547)
327 COG1747 Uncharacterized N-term 74.7 1.6E+02 0.0035 33.6 19.8 114 267-383 117-237 (711)
328 COG4976 Predicted methyltransf 74.0 4.9 0.00011 40.7 4.6 53 264-316 11-63 (287)
329 PF08631 SPO22: Meiosis protei 73.6 1.3E+02 0.0027 31.8 25.6 51 263-313 102-152 (278)
330 PRK10941 hypothetical protein; 73.5 22 0.00049 37.4 9.8 55 34-88 193-247 (269)
331 PF09613 HrpB1_HrpK: Bacterial 71.5 1E+02 0.0022 29.8 14.2 56 364-420 23-78 (160)
332 KOG0276 Vesicle coat complex C 70.9 65 0.0014 37.3 12.9 144 272-446 603-747 (794)
333 PF10345 Cohesin_load: Cohesin 70.8 2.3E+02 0.005 33.7 45.0 430 38-482 37-603 (608)
334 PF13374 TPR_10: Tetratricopep 70.6 9.7 0.00021 26.7 4.6 28 284-311 4-31 (42)
335 KOG3364 Membrane protein invol 70.4 48 0.001 31.0 9.8 69 384-452 31-103 (149)
336 KOG2581 26S proteasome regulat 70.1 1.8E+02 0.004 32.2 19.3 194 287-487 131-348 (493)
337 COG3947 Response regulator con 69.9 15 0.00033 38.6 7.2 59 284-342 281-339 (361)
338 PF09613 HrpB1_HrpK: Bacterial 69.4 1.1E+02 0.0024 29.5 14.0 55 328-383 22-76 (160)
339 PF04781 DUF627: Protein of un 68.7 44 0.00096 30.0 9.0 104 289-415 3-107 (111)
340 KOG1464 COP9 signalosome, subu 68.3 1.6E+02 0.0034 30.8 14.1 186 264-450 43-261 (440)
341 KOG1166 Mitotic checkpoint ser 67.8 1E+02 0.0022 38.5 14.8 118 57-191 35-164 (974)
342 PF09986 DUF2225: Uncharacteri 67.2 41 0.00088 34.2 9.8 67 282-348 118-197 (214)
343 PF01535 PPR: PPR repeat; Int 66.6 8.7 0.00019 25.0 3.3 28 58-85 2-29 (31)
344 PF07721 TPR_4: Tetratricopept 66.6 8.2 0.00018 24.7 3.0 23 284-306 3-25 (26)
345 PF09205 DUF1955: Domain of un 66.4 1.1E+02 0.0025 28.5 11.2 117 292-415 12-149 (161)
346 TIGR02996 rpt_mate_G_obs repea 65.6 13 0.00028 27.1 4.0 28 305-332 5-32 (42)
347 KOG4507 Uncharacterized conser 65.3 94 0.002 35.9 12.6 113 271-384 202-316 (886)
348 PF04053 Coatomer_WDAD: Coatom 65.1 1.2E+02 0.0025 34.6 13.9 117 270-410 310-426 (443)
349 COG4649 Uncharacterized protei 64.6 1.5E+02 0.0032 29.1 16.6 122 292-414 68-195 (221)
350 KOG1839 Uncharacterized protei 64.5 49 0.0011 41.6 11.3 26 312-337 969-994 (1236)
351 PF07720 TPR_3: Tetratricopept 63.7 23 0.0005 24.9 5.1 31 283-313 2-34 (36)
352 PF12854 PPR_1: PPR repeat 63.5 12 0.00027 25.7 3.6 28 55-82 6-33 (34)
353 KOG3783 Uncharacterized conser 63.2 2.8E+02 0.0061 31.9 19.9 235 243-487 233-522 (546)
354 KOG3807 Predicted membrane pro 62.3 2.1E+02 0.0046 30.8 13.8 116 334-463 202-318 (556)
355 PF13374 TPR_10: Tetratricopep 61.9 14 0.00031 25.8 4.0 28 318-345 4-31 (42)
356 PRK15180 Vi polysaccharide bio 61.7 1.3E+02 0.0028 34.0 12.6 121 268-390 309-430 (831)
357 PF13041 PPR_2: PPR repeat fam 61.7 31 0.00066 25.7 5.9 29 352-380 4-32 (50)
358 smart00299 CLH Clathrin heavy 60.7 1.4E+02 0.003 27.5 15.0 119 293-431 18-136 (140)
359 PRK15180 Vi polysaccharide bio 60.5 1.4E+02 0.0031 33.6 12.7 129 294-424 301-429 (831)
360 TIGR02996 rpt_mate_G_obs repea 60.0 22 0.00048 25.9 4.4 32 270-301 4-35 (42)
361 KOG1310 WD40 repeat protein [G 58.5 77 0.0017 36.2 10.4 84 298-382 390-476 (758)
362 PF15297 CKAP2_C: Cytoskeleton 58.4 71 0.0015 34.6 9.9 52 297-348 118-172 (353)
363 PF14863 Alkyl_sulf_dimr: Alky 57.7 60 0.0013 30.6 8.3 85 242-331 35-119 (141)
364 COG4455 ImpE Protein of avirul 57.3 1.6E+02 0.0036 29.9 11.5 59 290-348 9-67 (273)
365 COG0790 FOG: TPR repeat, SEL1 56.8 2.6E+02 0.0056 29.4 23.2 145 283-434 74-236 (292)
366 KOG1310 WD40 repeat protein [G 56.2 64 0.0014 36.7 9.3 84 265-348 391-477 (758)
367 COG0790 FOG: TPR repeat, SEL1 55.7 2.7E+02 0.0058 29.2 20.2 122 264-392 93-230 (292)
368 KOG1920 IkappaB kinase complex 55.4 2.2E+02 0.0048 35.9 14.3 166 297-480 888-1063(1265)
369 PF12862 Apc5: Anaphase-promot 54.4 37 0.00081 29.3 6.1 53 293-345 9-70 (94)
370 PF01535 PPR: PPR repeat; Int 54.4 18 0.00038 23.4 3.2 26 354-379 3-28 (31)
371 PF00244 14-3-3: 14-3-3 protei 53.3 2.7E+02 0.0059 28.6 15.2 29 286-314 5-33 (236)
372 PF14853 Fis1_TPR_C: Fis1 C-te 53.1 39 0.00085 26.0 5.2 27 396-423 12-38 (53)
373 PF09205 DUF1955: Domain of un 53.0 1.9E+02 0.0042 27.1 10.3 82 261-346 69-150 (161)
374 TIGR02561 HrpB1_HrpK type III 52.8 2E+02 0.0043 27.5 10.7 59 290-348 18-76 (153)
375 TIGR00756 PPR pentatricopeptid 52.2 26 0.00057 23.0 3.9 28 58-85 2-29 (35)
376 PRK15490 Vi polysaccharide bio 51.2 60 0.0013 37.9 8.6 58 281-340 41-98 (578)
377 PF07721 TPR_4: Tetratricopept 51.0 17 0.00036 23.2 2.4 21 424-444 5-25 (26)
378 COG3914 Spy Predicted O-linked 50.3 4.8E+02 0.01 30.5 17.3 65 268-332 51-117 (620)
379 PF12862 Apc5: Anaphase-promot 50.3 87 0.0019 27.0 7.7 60 27-86 3-71 (94)
380 PF15297 CKAP2_C: Cytoskeleton 50.2 92 0.002 33.8 9.1 64 37-100 118-186 (353)
381 TIGR03504 FimV_Cterm FimV C-te 49.1 29 0.00064 25.6 3.8 25 286-310 3-27 (44)
382 PRK13184 pknD serine/threonine 48.9 2.7E+02 0.0057 34.9 14.0 55 366-422 534-588 (932)
383 PF12854 PPR_1: PPR repeat 48.0 41 0.00089 23.0 4.2 24 353-376 9-32 (34)
384 PF08911 NUP50: NUP50 (Nucleop 47.7 5.2 0.00011 33.0 -0.4 38 728-765 26-68 (72)
385 KOG1114 Tripeptidyl peptidase 47.7 2.8E+02 0.0061 34.1 13.2 71 402-472 1212-1283(1304)
386 COG2912 Uncharacterized conser 47.6 68 0.0015 33.6 7.6 58 292-349 191-248 (269)
387 TIGR03504 FimV_Cterm FimV C-te 47.3 38 0.00082 25.0 4.1 26 424-449 3-28 (44)
388 KOG1464 COP9 signalosome, subu 46.6 3.7E+02 0.0081 28.2 17.5 153 296-449 41-220 (440)
389 TIGR03362 VI_chp_7 type VI sec 46.2 4E+02 0.0088 28.6 15.1 51 399-449 226-279 (301)
390 PF04781 DUF627: Protein of un 45.5 1.5E+02 0.0033 26.7 8.4 80 264-343 12-105 (111)
391 PF07079 DUF1347: Protein of u 45.5 5E+02 0.011 29.4 15.4 143 358-501 13-174 (549)
392 KOG1839 Uncharacterized protei 45.0 2.2E+02 0.0047 36.3 12.3 149 338-488 960-1131(1236)
393 PF12968 DUF3856: Domain of Un 44.8 84 0.0018 28.8 6.6 61 284-344 57-128 (144)
394 PF13812 PPR_3: Pentatricopept 44.8 44 0.00095 22.0 4.0 29 57-85 2-30 (34)
395 PF00244 14-3-3: 14-3-3 protei 44.0 3.8E+02 0.0082 27.6 15.8 166 319-484 4-197 (236)
396 PF09670 Cas_Cas02710: CRISPR- 43.8 2.6E+02 0.0057 31.0 12.1 70 17-86 123-199 (379)
397 COG3914 Spy Predicted O-linked 43.8 5.9E+02 0.013 29.8 14.8 132 296-429 45-185 (620)
398 COG5187 RPN7 26S proteasome re 43.7 4.3E+02 0.0093 28.1 16.2 101 350-451 114-223 (412)
399 KOG1972 Uncharacterized conser 43.0 3.7E+02 0.008 32.6 13.1 48 416-465 832-879 (913)
400 KOG0686 COP9 signalosome, subu 42.9 3E+02 0.0066 30.6 11.7 96 318-414 152-257 (466)
401 TIGR00756 PPR pentatricopeptid 42.8 43 0.00092 22.0 3.7 26 354-379 3-28 (35)
402 KOG2062 26S proteasome regulat 41.8 5.4E+02 0.012 31.0 14.1 109 333-448 128-238 (929)
403 KOG2066 Vacuolar assembly/sort 41.4 7.3E+02 0.016 30.1 25.8 65 37-103 371-437 (846)
404 COG2912 Uncharacterized conser 41.2 84 0.0018 32.9 7.1 61 264-324 197-257 (269)
405 PF10373 EST1_DNA_bind: Est1 D 40.9 1.1E+02 0.0024 31.8 8.4 42 302-343 2-43 (278)
406 PF10373 EST1_DNA_bind: Est1 D 40.2 1.2E+02 0.0025 31.6 8.4 61 41-101 1-62 (278)
407 PF10579 Rapsyn_N: Rapsyn N-te 40.1 1.4E+02 0.003 25.2 6.8 51 389-440 10-63 (80)
408 COG3947 Response regulator con 40.0 4.9E+02 0.011 27.8 16.0 62 425-488 284-345 (361)
409 TIGR02561 HrpB1_HrpK type III 39.6 3.5E+02 0.0075 25.9 13.4 100 329-449 23-122 (153)
410 KOG2062 26S proteasome regulat 39.2 7.7E+02 0.017 29.8 18.2 111 262-381 125-240 (929)
411 COG4649 Uncharacterized protei 39.0 3.9E+02 0.0085 26.3 14.5 117 266-382 76-198 (221)
412 PF12968 DUF3856: Domain of Un 37.9 3.3E+02 0.0071 25.1 10.0 14 400-413 114-127 (144)
413 KOG2041 WD40 repeat protein [G 37.8 7.9E+02 0.017 29.5 25.0 184 121-341 682-877 (1189)
414 KOG0276 Vesicle coat complex C 37.6 4.2E+02 0.0091 31.1 12.1 118 270-411 629-746 (794)
415 KOG2041 WD40 repeat protein [G 37.3 8E+02 0.017 29.4 28.6 37 271-307 841-877 (1189)
416 KOG4814 Uncharacterized conser 37.2 3.2E+02 0.0069 32.2 11.2 96 281-378 354-455 (872)
417 PRK15490 Vi polysaccharide bio 37.1 1.6E+02 0.0035 34.4 9.2 79 328-410 20-98 (578)
418 PF11846 DUF3366: Domain of un 37.1 1E+02 0.0022 30.5 6.9 49 38-87 127-175 (193)
419 KOG4279 Serine/threonine prote 37.0 1.4E+02 0.0031 35.6 8.5 66 330-396 257-331 (1226)
420 PRK15338 type III secretion sy 36.5 2.6E+02 0.0055 30.8 10.0 24 270-293 111-134 (372)
421 PF09797 NatB_MDM20: N-acetylt 36.5 2.2E+02 0.0048 31.3 10.1 41 300-340 201-241 (365)
422 KOG4437 ATP-dependent DNA liga 35.8 3.4E+02 0.0074 29.1 10.4 93 367-468 213-310 (482)
423 PF11846 DUF3366: Domain of un 35.2 1.2E+02 0.0026 29.9 7.1 46 267-313 130-175 (193)
424 PF11207 DUF2989: Protein of u 34.6 4.9E+02 0.011 26.2 17.9 53 281-334 140-196 (203)
425 cd02680 MIT_calpain7_2 MIT: do 34.4 51 0.0011 27.4 3.5 17 400-416 20-36 (75)
426 COG5159 RPN6 26S proteasome re 34.4 4.3E+02 0.0093 28.1 10.7 57 389-446 129-191 (421)
427 COG4941 Predicted RNA polymera 34.3 6.5E+02 0.014 27.5 19.3 50 402-451 345-396 (415)
428 smart00299 CLH Clathrin heavy 34.2 3.7E+02 0.008 24.6 10.3 35 36-70 21-55 (140)
429 PF07720 TPR_3: Tetratricopept 33.5 1E+02 0.0023 21.6 4.4 24 317-340 2-25 (36)
430 KOG2114 Vacuolar assembly/sort 33.4 9.9E+02 0.021 29.3 17.5 87 283-376 369-456 (933)
431 PF11817 Foie-gras_1: Foie gra 33.4 2.9E+02 0.0063 28.6 9.8 74 264-337 154-239 (247)
432 PF10516 SHNi-TPR: SHNi-TPR; 33.1 90 0.002 22.2 4.1 27 284-310 3-29 (38)
433 KOG0687 26S proteasome regulat 32.9 6.7E+02 0.015 27.2 14.0 98 316-418 104-213 (393)
434 PF04762 IKI3: IKI3 family; I 32.6 1.1E+02 0.0023 38.4 7.4 120 39-169 795-922 (928)
435 PF13812 PPR_3: Pentatricopept 32.1 85 0.0018 20.6 3.8 26 354-379 4-29 (34)
436 KOG3521 Predicted guanine nucl 31.3 6.8E+02 0.015 29.7 12.6 81 41-146 221-311 (846)
437 PF10516 SHNi-TPR: SHNi-TPR; 29.8 85 0.0018 22.4 3.5 28 318-345 3-30 (38)
438 KOG1811 Predicted Zn2+-binding 29.6 9.1E+02 0.02 28.3 13.0 66 350-415 586-653 (1141)
439 KOG0889 Histone acetyltransfer 29.1 2E+03 0.044 31.6 33.5 132 352-487 2813-2956(3550)
440 KOG0889 Histone acetyltransfer 28.9 2E+03 0.044 31.6 31.8 140 317-463 2813-2966(3550)
441 COG3014 Uncharacterized protei 28.4 4.1E+02 0.0089 28.9 9.6 13 270-282 43-55 (449)
442 PF10579 Rapsyn_N: Rapsyn N-te 28.3 3.4E+02 0.0074 22.9 7.3 32 294-325 18-49 (80)
443 KOG0687 26S proteasome regulat 28.0 4.8E+02 0.011 28.2 10.0 68 420-487 104-172 (393)
444 PF09670 Cas_Cas02710: CRISPR- 27.6 8.8E+02 0.019 26.9 13.6 59 287-345 136-198 (379)
445 KOG4425 Uncharacterized conser 26.7 1.1E+02 0.0023 34.2 5.2 70 626-695 105-188 (900)
446 cd02684 MIT_2 MIT: domain cont 25.6 84 0.0018 26.1 3.3 16 400-415 20-35 (75)
447 PF11817 Foie-gras_1: Foie gra 24.0 4E+02 0.0087 27.5 8.9 47 299-345 155-207 (247)
448 COG4170 SapD ABC-type antimicr 23.9 39 0.00084 33.9 1.2 24 568-591 261-284 (330)
449 PF12583 TPPII_N: Tripeptidyl 23.3 1.4E+02 0.0029 27.8 4.4 47 18-64 67-118 (139)
450 PF04190 DUF410: Protein of un 23.2 8.6E+02 0.019 25.3 18.8 25 350-374 89-113 (260)
451 COG4455 ImpE Protein of avirul 22.6 4.8E+02 0.01 26.8 8.4 69 31-99 10-82 (273)
452 PF12753 Nro1: Nuclear pore co 22.5 4E+02 0.0088 29.6 8.6 84 239-328 53-160 (404)
453 PF14929 TAF1_subA: TAF RNA Po 22.1 1.3E+03 0.028 27.0 18.0 33 112-144 111-145 (547)
454 KOG3779 Homeobox transcription 21.9 2E+02 0.0043 32.0 6.0 20 596-615 456-475 (737)
455 KOG2581 26S proteasome regulat 21.7 1.2E+03 0.025 26.3 16.4 130 321-452 131-279 (493)
456 COG4259 Uncharacterized protei 21.0 3.9E+02 0.0084 23.7 6.4 35 396-434 82-116 (121)
No 1
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=100.00 E-value=6.8e-100 Score=804.54 Aligned_cols=614 Identities=37% Similarity=0.638 Sum_probs=557.6
Q ss_pred hhhccccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChH
Q 004187 11 EENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVP 90 (770)
Q Consensus 11 e~~i~~~~~P~d~~aw~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~ 90 (770)
+++|+ .||+|+++|..|++++++++++++|..||+++..||+.+++|+.||+.+++.++|+.++.+|.|||....+++
T Consensus 10 ~~rie--~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlD 87 (656)
T KOG1914|consen 10 RERIE--ENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLD 87 (656)
T ss_pred HHHHh--cCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHh
Confidence 78999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc
Q 004187 91 LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT 170 (770)
Q Consensus 91 lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~ 170 (770)
||.+|+.|+++.++.. ...++.+.++|++++..+|+|+.|+++|.+|+.|++.+++.+.|+++|+++.+|++|+|||.+
T Consensus 88 LW~lYl~YVR~~~~~~-~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKL-FGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHHHccCc-chHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999987642 346799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHH
Q 004187 171 PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTF 250 (770)
Q Consensus 171 P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ 250 (770)
|+++++++|++|..||+.+|..++++++.+.++.|++|+++|++.+...++|+++...+||.++..+.+|+++|+++|.|
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCC-CcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhC-CC
Q 004187 251 EKGNPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS--------------IDAAIKVFQRALKAL-PD 314 (770)
Q Consensus 251 ek~n~~~l-d~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~--------------~e~A~~v~erAi~~~-P~ 314 (770)
|++||+++ +.....+|+.++|++||...++++++|++++.++...++ -+++.++|||++... -.
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 99999995 667789999999999999999999999999999999887 789999999999964 45
Q ss_pred cHHHHHHHHHHHHHhCc---HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004187 315 SEMLRYAFAELEESRGA---IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAY 391 (770)
Q Consensus 315 s~~lw~~~a~~~~~~g~---~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~ 391 (770)
+..++++|+++.+..-+ .+....+|++++.....+.+.+|++|++|.+|..+++.||.+|.+|++......++|+..
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 78889999999998755 888999999999987776789999999999999999999999999999998888999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHHcC
Q 004187 392 ALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS-LPPEESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 392 a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~-~p~~~~~~lw~~~~~fE~~~G 470 (770)
|.|||.|++|.+.|.+||+.++++|++++.+.+.|++|++.+|+.++||.+|||+++. ++++++.++|.+|+.||..+|
T Consensus 407 A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 407 ALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999997 778899999999999999999
Q ss_pred CHHHHHHHHHHHHHhccc--ccccccchhhhhHHhhhhhcccCCCCCCChhhhhhHHHHHHHHHhhhccccccccCCCCC
Q 004187 471 DLDSTLKVEQRRKEALSR--TGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPG 548 (770)
Q Consensus 471 d~~~~~k~~~R~~~~~~~--~~e~~~~~~e~ll~~~~~Ry~~ldlw~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 548 (770)
|+.++.++.+|+..++|. +.+.+ ....+++||.|+|+.||+..+|+.+|+.+.......... .++....
T Consensus 487 dL~si~~lekR~~~af~~~qe~~~~------~~~~~v~RY~~~d~~~c~~~elk~l~~~~~~~~~~~~~g---~~~~~s~ 557 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPADQEYEGN------ETALFVDRYGILDLYPCSLDELKFLGYKEEDSAGLGFVG---LLDAFSS 557 (656)
T ss_pred cHHHHHHHHHHHHHhcchhhcCCCC------hHHHHHHHHhhcccccccHHHHHhhhHHHhhccccCCCC---chhhhhh
Confidence 999999999999999993 33333 334699999999999999999999999875321000000 0000000
Q ss_pred ccCCCCCCCCCCCCCCCCccCCCCCCccccCCCCCCCCCCCCCCCCcCCccccccCCCCccccCCCCCCCchhhhhhcCC
Q 004187 549 IVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSALNALSNPMVATGGGGIMNPFDEMLKAAS 628 (770)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 628 (770)
.++. .+........+++||++||+||+||.+++||.||++|| +| |+|
T Consensus 558 ~~~~----~~~~~nv~~~~~~pd~~qli~~~~r~n~~~~~~p~~~g------v~-----------------------p~P 604 (656)
T KOG1914|consen 558 NLGK----ISQHSNVLMELPRPDVSQLIPFQPRSNAPPSAHPVPGG------VF-----------------------PLP 604 (656)
T ss_pred hccc----ccccccccccCCchhHHHhcccCCCCCCCCccCCCCCC------CC-----------------------CCC
Confidence 0111 01122334468899999999999999999999999988 67 999
Q ss_pred HHHHHHHhhCC---CCCCCCCCHHHHHHHHhhCCCCCCCcCCCC
Q 004187 629 PAIFAFLANLP---AVEGPTPNVDIVLSICLQSDIPTGQMGKSP 669 (770)
Q Consensus 629 ~~~~~~~~~~~---~~~gp~~~vd~~~~~~~~~~~~~~~~~~~~ 669 (770)
|+++.||+.|| ||+|||++|+.|++|+.+|+||+-..-++|
T Consensus 605 ~~v~~ll~~lP~p~~f~gp~i~~~ll~~~~~~~~iP~v~~~~~~ 648 (656)
T KOG1914|consen 605 PAVADLLSLLPPPQCFNGPFIQVELLNDIIDRVEIPNVESTKSG 648 (656)
T ss_pred hHHHHHHHcCCCcccccCccccHHHHHHHHHhccCCCccccccc
Confidence 99999999999 899999999999999999999986655444
No 2
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=100.00 E-value=3.3e-54 Score=447.18 Aligned_cols=488 Identities=27% Similarity=0.460 Sum_probs=437.3
Q ss_pred hhhhccccCCCCCHHHHHHHHHHhcCC-ChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 004187 10 SEENITGVADKYNVETAEILANSALHL-PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ 88 (770)
Q Consensus 10 ~e~~i~~~~~P~d~~aw~~l~~~~~~~-~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~ 88 (770)
+.++|. .||.|+-.|-.|++++..+ ..++.|.+||++..-||.-..+|..|+.-|+..++|..++.+|.|||....+
T Consensus 31 LRerIk--dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 31 LRERIK--DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHhh--cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 346777 9999999999999999875 7899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHH
Q 004187 89 VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAV 168 (770)
Q Consensus 89 ~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral 168 (770)
++||..|+.|+++.++......+-++-++|++++..++.+|.|+++|..|..|++.+++.+.++++++++.+|..|+|||
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876434667789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCChhhHHHHHHHHHH
Q 004187 169 VTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNML-AVPPTGSYKEEQQWIAWKRL 247 (770)
Q Consensus 169 ~~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~-~v~p~~~~~~~~~~~lw~~y 247 (770)
.+|+++++.+|++|..||..+|+.++++++.+.++.|+.|+..|++......++....+ .....+. .+.....-|..+
T Consensus 189 ~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK-~~r~s~S~WlNw 267 (660)
T COG5107 189 QTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANK-AARTSDSNWLNW 267 (660)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcc-ccccccchhhhH
Confidence 99999999999999999999999999999999999999999999999888888764321 1100000 011112369999
Q ss_pred HHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 248 LTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEE 327 (770)
Q Consensus 248 i~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~ 327 (770)
|.||..|++++.......|+..+|++++...+..+++|+.|..++...++-+.|+++.+|++..+|. +.+.|+.+++
T Consensus 268 IkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~ye 344 (660)
T COG5107 268 IKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYE 344 (660)
T ss_pred hhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHh
Confidence 9999999998855456669999999999999999999999999999999999999999999988887 7888999999
Q ss_pred HhCcHHHHHHHHHHHhcc------------------CCC-----------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004187 328 SRGAIAAAKKLYESLLTD------------------SVN-----------TTALAHIQFIRFLRRTEGVEAARKYFLDAR 378 (770)
Q Consensus 328 ~~g~~e~A~~iye~al~~------------------~p~-----------~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al 378 (770)
...+-+....+|+++++. ++. ..+.+|+-+++..+|..+.+.||.+|.++.
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 988888888888887642 010 124689999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHH
Q 004187 379 KSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEV 458 (770)
Q Consensus 379 ~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~l 458 (770)
+.+-...++|+..|.||+.++++...|.+||+.++.+||+++.+...|..|++..|+.++||.+|+.++..+..++-..+
T Consensus 425 k~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred ccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 98877899999999999999999999999999999999999999999999999999999999999999988776666899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccchhhhhHHhhhhhcccCC
Q 004187 459 WKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMD 512 (770)
Q Consensus 459 w~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~~e~~~~~~e~ll~~~~~Ry~~ld 512 (770)
|..++.+|..+|++..+..+.+|..+.+| -+++...|..||.+-+
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~p---------Qen~~evF~Sry~ik~ 549 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRELVP---------QENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHHHcC---------cHhHHHHHHHHHhhhc
Confidence 99999999999999999999999999999 3678888999998863
No 3
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-45 Score=384.93 Aligned_cols=476 Identities=23% Similarity=0.366 Sum_probs=320.4
Q ss_pred hhhhhccccCCCCCHHHHHHHHH-HhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 004187 9 ESEENITGVADKYNVETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL 87 (770)
Q Consensus 9 e~e~~i~~~~~P~d~~aw~~l~~-~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p 87 (770)
|+|..|+ .|.-+...|++++. +...+++.+||.+||++|...-.+..+|+.|++++|++.++..|++++.||+...|
T Consensus 61 efEd~ir--rnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 61 EFEDQIR--RNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 5556666 66666666666655 33334555666666666665555555666666666666555556666666655555
Q ss_pred Ch-HHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHH
Q 004187 88 QV-PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQR 166 (770)
Q Consensus 88 ~~-~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqr 166 (770)
.+ .+|..|+-.+...++ ++-+|++|++.+.+ .| ....|..||+|+.. ...++.||.+|++
T Consensus 139 RVdqlWyKY~ymEE~LgN------i~gaRqiferW~~w---~P-~eqaW~sfI~fElR---------ykeieraR~IYer 199 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLGN------IAGARQIFERWMEW---EP-DEQAWLSFIKFELR---------YKEIERARSIYER 199 (677)
T ss_pred hHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHcC---CC-cHHHHHHHHHHHHH---------hhHHHHHHHHHHH
Confidence 43 456666555555544 34555555544443 22 23455555555543 2345555555555
Q ss_pred HHcc-ccccHHHHHHHHHHHHHHhhH-h------------HHH-----------HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004187 167 AVVT-PTHHVEQLWKDYENFENSVSR-Q------------LAK-----------GLLSEYQSKYTSARAVYRERKKYCEE 221 (770)
Q Consensus 167 al~~-P~~~~~~l~~~y~~fe~~~~~-~------------la~-----------~ll~e~~~~y~~A~~v~k~~~~~~~~ 221 (770)
-+-. |. ..-|..|.+||+..+. . ++. ...++.+++|++|+.+|+. +
T Consensus 200 fV~~HP~---v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky------A 270 (677)
T KOG1915|consen 200 FVLVHPK---VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY------A 270 (677)
T ss_pred Hheeccc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 5543 33 2345555555554211 0 000 0112457889999998885 2
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHHHHHHHHcC--CCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHH
Q 004187 222 IDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGN--PQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSID 299 (770)
Q Consensus 222 L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n--~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e 299 (770)
|+ ++ |.+.. -++++.|..||+.. ..+++.....+| ...|+..+..+|.+.+.|++|..+..+.|+.+
T Consensus 271 ld----~~-pk~ra-----eeL~k~~~~fEKqfGd~~gIEd~Iv~KR-k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 271 LD----HI-PKGRA-----EELYKKYTAFEKQFGDKEGIEDAIVGKR-KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HH----hc-CcccH-----HHHHHHHHHHHHHhcchhhhHHHHhhhh-hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHH
Confidence 22 23 44422 26999999999964 444555445554 56899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCc---------HHHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCC---CcHHHHHHHHHHHHHhcC
Q 004187 300 AAIKVFQRALKALPDS---------EMLRYAFAELEES-RGAIAAAKKLYESLLTDSVN---TTALAHIQFIRFLRRTEG 366 (770)
Q Consensus 300 ~A~~v~erAi~~~P~s---------~~lw~~~a~~~~~-~g~~e~A~~iye~al~~~p~---~~~~~w~~~~~~~~r~~~ 366 (770)
..+++|+|||...|.. ..||+.||.+++. ..+.+.++++|+.+|.+.|. +.+.+|+.|+.|+.|+.+
T Consensus 340 ~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~ 419 (677)
T KOG1915|consen 340 RIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLN 419 (677)
T ss_pred HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcc
Confidence 9999999999999864 3589999988765 68999999999999998886 367899999999999999
Q ss_pred HHHHHHHHHHHHcCC---------------------------------CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 004187 367 VEAARKYFLDARKSP---------------------------------NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 413 (770)
Q Consensus 367 ~e~A~~~f~~Al~~~---------------------------------~~~~~~yi~~a~le~~~~g~~~~A~~ife~al 413 (770)
+..||+++..||..+ |.+...|..+|.++..+ |+.+.|+.||+.++
T Consensus 420 l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L-gdtdRaRaifelAi 498 (677)
T KOG1915|consen 420 LTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSL-GDTDRARAIFELAI 498 (677)
T ss_pred cHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh-hhHHHHHHHHHHHh
Confidence 988888888887543 34456677777776665 77777777777777
Q ss_pred HhC-CCcHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-----HcC-----------CHHHH
Q 004187 414 KRF-MHEPA-YILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQ-----MYG-----------DLDST 475 (770)
Q Consensus 414 k~~-p~~~~-~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~-----~~G-----------d~~~~ 475 (770)
... -+.|+ +|..|++|+...|++++||.+|+|.|... +|..+|..|+.||. ..| +...+
T Consensus 499 ~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt---~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~A 575 (677)
T KOG1915|consen 499 SQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT---QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRA 575 (677)
T ss_pred cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc---ccchHHHhHHHHhccccccccccchhhhhcchhHHHHH
Confidence 653 33443 56777777777777777777777777652 45667777777776 223 34455
Q ss_pred HHHHHHHHHhcccccccccchhhhhHHhhhhhcccCCCCCCChhhhhhHHHHHHHHHhhhcccccc
Q 004187 476 LKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKS 541 (770)
Q Consensus 476 ~k~~~R~~~~~~~~~e~~~~~~e~ll~~~~~Ry~~ldlw~~~~~~l~~l~~~~~~~~~~~~~~~~~ 541 (770)
++++.|+...+.... .-.+|..+|..|-..+..++..+.++.+.++|+++++|-
T Consensus 576 R~iferAn~~~k~~~------------~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKr 629 (677)
T KOG1915|consen 576 RKIFERANTYLKEST------------PKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKR 629 (677)
T ss_pred HHHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhh
Confidence 666666666665110 145677788999999999999999999998899888764
No 4
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.4e-36 Score=316.20 Aligned_cols=497 Identities=20% Similarity=0.356 Sum_probs=378.5
Q ss_pred chhhhhccccCCCCCHHHHHHHHH-HhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 004187 8 PESEENITGVADKYNVETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 86 (770)
Q Consensus 8 ~e~e~~i~~~~~P~d~~aw~~l~~-~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~ 86 (770)
+.+|.++. .+-.++..|+++++ ++.++.+++||++++++++.-|...++|..|+-++..+||+..|+++|+|.+...
T Consensus 94 Sv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~ 171 (677)
T KOG1915|consen 94 SVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWE 171 (677)
T ss_pred HHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC
Confidence 45788888 89999999999999 7788899999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCc-----------------
Q 004187 87 LQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALN----------------- 149 (770)
Q Consensus 87 p~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~----------------- 149 (770)
|....|.+|++|+.+.++ ++.+|.+|+ ++|-.|| ..+.|+.|+.|+.......
T Consensus 172 P~eqaW~sfI~fElRyke------ieraR~IYe---rfV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 172 PDEQAWLSFIKFELRYKE------IERARSIYE---RFVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred CcHHHHHHHHHHHHHhhH------HHHHHHHHH---HHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999886 689999999 4444575 5689999999998754321
Q ss_pred -----------hHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhHhH--HHHHHHHHhHHHHHHHH-----
Q 004187 150 -----------AQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQL--AKGLLSEYQSKYTSARA----- 210 (770)
Q Consensus 150 -----------~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~~l--a~~ll~e~~~~y~~A~~----- 210 (770)
..+.++.++.||.+|+-||.. |....+.|++.|..||+.++... -..++..+.-.|+...+
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 022355566777777777765 66666677777777776543211 11111111111111100
Q ss_pred ------HHH------HHHHHHHHhhhhccCCCCCCChh-hHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHH
Q 004187 211 ------VYR------ERKKYCEEIDWNMLAVPPTGSYK-EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMY 277 (770)
Q Consensus 211 ------v~k------~~~~~~~~L~~~~~~v~p~~~~~-~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~ 277 (770)
.++ ....+.+...+.+.++||..... -...+-+|.+|+.|++-.. ...+|...+|+.||..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~------ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEA------EDVERTRQVYQACLDL 395 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHhh
Confidence 000 00111111122345788753211 1222347777777876442 2446778899999999
Q ss_pred cCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHH
Q 004187 278 LYH----YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALA 353 (770)
Q Consensus 278 ~p~----~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~ 353 (770)
-|| +..+|+.||++++++.++..|++++-+||..||.+..+ -.|..++.+++++|+++++|++.|...|. +..+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF-k~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~ 473 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF-KGYIELELQLREFDRCRKLYEKFLEFSPE-NCYA 473 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH-HHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHH
Confidence 997 57999999999999999999999999999999998765 47899999999999999999999999998 7899
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 354 HIQFIRFLRRTEGVEAARKYFLDARKSPNFT--YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 431 (770)
Q Consensus 354 w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~--~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~ 431 (770)
|..|+.++...|+.+.||.+|+-|+..+... .-+|-.+..++..+ |.+++|+++|++.|...++.. +|+.++.|+.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~-~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE-GEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc-chHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 9999999999999999999999999987543 23455566667776 999999999999999998876 9999999998
Q ss_pred -----hcC-----------ChhHHHHHHHHHHhCC----CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--
Q 004187 432 -----RLN-----------DDRNIRALFERALSSL----PPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRT-- 489 (770)
Q Consensus 432 -----~~g-----------~~~~Ar~lferaL~~~----p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~-- 489 (770)
..+ ....||.+|++|...+ |.+....|...|..||..+|+...+..+..++.+.++++
T Consensus 552 s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr~ 631 (677)
T KOG1915|consen 552 SASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRRK 631 (677)
T ss_pred cccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhhh
Confidence 334 4568999999999853 345567899999999999999999999888888888754
Q ss_pred --cccccchhhhhHHhhhhhcccCCCCCCChhhhhhH-HHHHHHHH
Q 004187 490 --GEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHL-VRQEWLVK 532 (770)
Q Consensus 490 --~e~~~~~~e~ll~~~~~Ry~~ldlw~~~~~~l~~l-~~~~~~~~ 532 (770)
.+||.+.+| -.-.|.|.+-- .....++.| ....|..+
T Consensus 632 ~~~edG~~~~E-----Ey~DYiFPed~-~~~~~~K~LeaA~kWK~q 671 (677)
T KOG1915|consen 632 IQREDGDTEYE-----EYFDYIFPEDA-SATKNLKILEAAKKWKKQ 671 (677)
T ss_pred hhcccCchhHH-----HHHHhcCcccc-ccCcchHHHHHHHHHHHH
Confidence 456533333 33446666322 444577777 44567653
No 5
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=6.2e-34 Score=307.54 Aligned_cols=493 Identities=19% Similarity=0.275 Sum_probs=372.9
Q ss_pred hhhhccccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhc--------CCHHHHHHHHHH
Q 004187 10 SEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAV--------NNDDATKQLFSR 81 (770)
Q Consensus 10 ~e~~i~~~~~P~d~~aw~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~--------~~~~~a~~ifeR 81 (770)
+|+.|. .||+++..|.+++...+..+.++.+.+|||+|+.+|.+.++|..|++..... ..++.+..+|+|
T Consensus 16 fEeEil--Rnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er 93 (835)
T KOG2047|consen 16 FEEEIL--RNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFER 93 (835)
T ss_pred hHHHHH--cCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Confidence 677888 9999999999999988888999999999999999999999999999766542 247889999999
Q ss_pred HHhhc-CChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcC-c----------
Q 004187 82 CLLIC-LQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPAL-N---------- 149 (770)
Q Consensus 82 aL~~~-p~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~-~---------- 149 (770)
||..- -.+.+|++|+.|..+++. +.++|..|++||+.++.- ....||.-|+.|+.+..-. +
T Consensus 94 ~lv~mHkmpRIwl~Ylq~l~~Q~~------iT~tR~tfdrALraLpvt-qH~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 94 CLVFMHKMPRIWLDYLQFLIKQGL------ITRTRRTFDRALRALPVT-QHDRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHhcch------HHHHHHHHHHHHHhCchH-hhccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99875 478999999999999876 569999999999997643 3446999999998865321 0
Q ss_pred --------------------------------------------------------------------------------
Q 004187 150 -------------------------------------------------------------------------------- 149 (770)
Q Consensus 150 -------------------------------------------------------------------------------- 149 (770)
T Consensus 167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq 246 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ 246 (835)
T ss_pred cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH
Confidence
Q ss_pred ----------hHHHHHHHHHHHHHHHHHHcc--ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004187 150 ----------AQEESQRMIAIRKAYQRAVVT--PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKK 217 (770)
Q Consensus 150 ----------~~~~~~~~~~ar~vyqral~~--P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~ 217 (770)
.|-..+.+++||.+|+++|.+ ...+...+|..|..||+.......+ +-.+....-+....+--....
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHH
Confidence 023477899999999999987 5567899999999999874322211 100000000000011111112
Q ss_pred HHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHH-HcCC-----CHHHHHHHHHH
Q 004187 218 YCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLM-YLYH-----YPDIWYDYATW 291 (770)
Q Consensus 218 ~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~-~~p~-----~~~~w~~~a~~ 291 (770)
|+..+++..+.+...--.+....+.-|.+...+.++++ .+.+..|.+|+. .+|. -..+|..+|.+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~---------~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNA---------AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCCh---------HHHHHHHHHHHHccCcccCCCChhhHHHHHHHH
Confidence 33322221110000000011234568998888887765 345678888885 4554 34799999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CC---cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-----------------Cc
Q 004187 292 NAKSGSIDAAIKVFQRALKAL-PD---SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN-----------------TT 350 (770)
Q Consensus 292 l~~~g~~e~A~~v~erAi~~~-P~---s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~-----------------~~ 350 (770)
|...|+++.|+.+|++|++.. +. -..+|..+|..+....+++.|.++.++++..... ..
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 999999999999999999863 43 3678999999999999999999999999865332 13
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Q 004187 351 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF--MHEPAYILEYAD 428 (770)
Q Consensus 351 ~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~--p~~~~~~l~ya~ 428 (770)
..+|..|++++...|.++..+.+|++.++..-.++++-+++|.++... +-++++.++||+++..| |+.-++|..|..
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh-~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH-KYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-HHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 579999999999999999999999999999888999999999987764 78999999999999987 556799999975
Q ss_pred -HHHhcC--ChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccchhhhhHHhhh
Q 004187 429 -FLSRLN--DDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVV 505 (770)
Q Consensus 429 -~l~~~g--~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~~e~~~~~~e~ll~~~~ 505 (770)
|..+.| ..+.||.+||+||+.+|++....|+..|+.||..+|-...+.++++|+....+. .+...++|-.+....
T Consensus 556 kfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~--a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE--AQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHH
Confidence 444555 679999999999999999999999999999999999999999999999888872 233345555555555
Q ss_pred hhcccCCCCCCChhhhhhH
Q 004187 506 SRYSFMDLWPCSSKDLDHL 524 (770)
Q Consensus 506 ~Ry~~ldlw~~~~~~l~~l 524 (770)
+-|.+.--=+.|......|
T Consensus 634 e~yGv~~TR~iYekaIe~L 652 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIESL 652 (835)
T ss_pred HHhCCcccHHHHHHHHHhC
Confidence 5555543333333333333
No 6
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=100.00 E-value=1.6e-36 Score=320.71 Aligned_cols=276 Identities=42% Similarity=0.655 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004187 351 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFL 430 (770)
Q Consensus 351 ~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l 430 (770)
+.+|++|++|.+|.++++.||.+|++|++..++.+++|+.+|.||+++.++.+.|++|||+|++.+|++..+|+.|++|+
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 36899999999999999999999999999889999999999999999878999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccchhhhhHHhhhhhcc
Q 004187 431 SRLNDDRNIRALFERALSSLPPEE-SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYS 509 (770)
Q Consensus 431 ~~~g~~~~Ar~lferaL~~~p~~~-~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~~e~~~~~~e~ll~~~~~Ry~ 509 (770)
.+.|+.++||.+|||++..++.+. ...||.+|+.||.++||++.+.++++|+.+.++ + +..+..+.+||+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~---~------~~~~~~f~~ry~ 151 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP---E------DNSLELFSDRYS 151 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT---T------S-HHHHHHCCT-
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---h------hhHHHHHHHHhh
Confidence 999999999999999999999777 789999999999999999999999999999999 2 345668999999
Q ss_pred cCCCCCCChhhhhhHHHHHHHHHhhhccccccccCCCCCccCCCCCCCCCCCCCCCCccCCCCCCccccCCCCCCCCCCC
Q 004187 510 FMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGIS 589 (770)
Q Consensus 510 ~ldlw~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~ 589 (770)
++|+|||...+|+.+++.+...........+. .+.....+. ..+......+||+++|.+++....... .
T Consensus 152 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~kr-------~~~~~~~~~~P~~~~~~~~~~~~~~~~--~ 220 (280)
T PF05843_consen 152 FLDLNPISPRELDSIGYQERPSQNDPSSVESS--QSSKNSPKR-------PVSDPDSDPRPDKSQMIEGPRPDQQRS--M 220 (280)
T ss_dssp BTTB-CCHHCCCCTTT----------------------------------------------------------------
T ss_pred ccccCcccHHhhhhhhhhhccccccccccccc--ccccCCccC-------CcccccccCCCchhhhhccccccchhh--h
Confidence 99999999999999988876543211111000 000000000 001111127999999998633111110 0
Q ss_pred CCCCCcCCccccccCCCCccccCCCCCCCchhhhhhcCCHHHHHHHhhCC---CCCCCCCCHHHHHHHHhhCCCC
Q 004187 590 PSTTATGASSALNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLP---AVEGPTPNVDIVLSICLQSDIP 661 (770)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~---~~~gp~~~vd~~~~~~~~~~~~ 661 (770)
+.+.+ +. ..+++.........++||+++.||+.|| +|+||++++|.||++|++++||
T Consensus 221 ~~~~~----~~-----------~~~~~~~~~~~~~~plP~~I~~LLs~LP~~~~F~gp~~~~~~lv~ll~~~~lP 280 (280)
T PF05843_consen 221 PQPQP----QP-----------QASPQQHPVQGQPFPLPPAIAALLSILPPPSYFNGPRFDPDKLVELLRQVNLP 280 (280)
T ss_dssp ---------------------------------------CCCHHHHCCSB-CCCCTTS-SSCHHHHHHHCT----
T ss_pred ccccc----cc-----------ccCccccccCCCCCCCCHHHHHHHHhCCChhhcCCCCCCHHHHHHHHhcCCCC
Confidence 01100 00 0001112222333479999999999999 6899999999999999999998
No 7
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=8.3e-31 Score=283.52 Aligned_cols=413 Identities=18% Similarity=0.234 Sum_probs=348.1
Q ss_pred CCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHH
Q 004187 18 ADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYI 96 (770)
Q Consensus 18 ~~P~d~~aw~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~ 96 (770)
..|.++..|...+..-. +...-..+++++|+..|++.++|+.-.+++ +.+.|+-+++||++.|| +.++|..|+
T Consensus 344 ~~P~Sv~lW~kA~dLE~--~~~~K~RVlRKALe~iP~sv~LWKaAVelE----~~~darilL~rAveccp~s~dLwlAla 417 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLES--DTKNKKRVLRKALEHIPRSVRLWKAAVELE----EPEDARILLERAVECCPQSMDLWLALA 417 (913)
T ss_pred hCCCChhhhhhHHhhhh--HHHHHHHHHHHHHHhCCchHHHHHHHHhcc----ChHHHHHHHHHHHHhccchHHHHHHHH
Confidence 77888888887665332 344456789999999999999999888877 55669999999999999 789999999
Q ss_pred HHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-----c
Q 004187 97 RFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-----P 171 (770)
Q Consensus 97 ~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-----P 171 (770)
+++- ++.+++++.++-+.++.++ .||+.-..+++ .+++.+.+.++..++|.. -
T Consensus 418 rLet----------YenAkkvLNkaRe~iptd~---~IWitaa~LEE---------~ngn~~mv~kii~rgl~~L~~ngv 475 (913)
T KOG0495|consen 418 RLET----------YENAKKVLNKAREIIPTDR---EIWITAAKLEE---------ANGNVDMVEKIIDRGLSELQANGV 475 (913)
T ss_pred HHHH----------HHHHHHHHHHHHhhCCCCh---hHHHHHHHHHH---------hcCCHHHHHHHHHHHHHHHhhcce
Confidence 9863 5788999999988876655 79999888865 467889999999999865 1
Q ss_pred cccHHHHHHHHHHHHHHhhHhHHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHHHHhhhhccC
Q 004187 172 THHVEQLWKDYENFENSVSRQLAKGLLSEY-----------------------QSKYTSARAVYRERKKYCEEIDWNMLA 228 (770)
Q Consensus 172 ~~~~~~l~~~y~~fe~~~~~~la~~ll~e~-----------------------~~~y~~A~~v~k~~~~~~~~L~~~~~~ 228 (770)
..+.++..++....+..-...+++.++... .+.++-|+.+|.. .+.
T Consensus 476 ~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~-----------alq 544 (913)
T KOG0495|consen 476 EINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH-----------ALQ 544 (913)
T ss_pred eecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH-----------HHh
Confidence 235566666776666542222233222111 1123334444443 445
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004187 229 VPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRA 308 (770)
Q Consensus 229 v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erA 308 (770)
+.|+.. .+|.+...|++.+. ..+-+..++++++..+|..+.+|+.||.-....|+...|+.++.+|
T Consensus 545 vfp~k~-------slWlra~~~ek~hg-------t~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 545 VFPCKK-------SLWLRAAMFEKSHG-------TRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred hccchh-------HHHHHHHHHHHhcC-------cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 667654 49999999999763 4456678999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHH
Q 004187 309 LKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVY 388 (770)
Q Consensus 309 i~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~y 388 (770)
+..+|+|.++|++-..++....++++||.+|.++....+. ..+|+.++.|++-+++.++|+.+++++++.-+....+|
T Consensus 611 f~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT--eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~ 688 (913)
T KOG0495|consen 611 FEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT--ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLW 688 (913)
T ss_pred HHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc--chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHH
Confidence 9999999999999999999999999999999999998775 68999999999999999999999999999988889999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Q 004187 389 VAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM 468 (770)
Q Consensus 389 i~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~ 468 (770)
+..++++... ++++.|++.|..+++++|+++.+|+..++++.+.|...+||.+|+++.-..| ++..+|...+++|.+
T Consensus 689 lmlGQi~e~~-~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP--k~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 689 LMLGQIEEQM-ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP--KNALLWLESIRMELR 765 (913)
T ss_pred HHHhHHHHHH-HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC--CcchhHHHHHHHHHH
Confidence 9999998875 9999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred cCCHHHHHHHHHHHHHhccc
Q 004187 469 YGDLDSTLKVEQRRKEALSR 488 (770)
Q Consensus 469 ~Gd~~~~~k~~~R~~~~~~~ 488 (770)
.|+.+.+.....+++.-+|.
T Consensus 766 ~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQECPS 785 (913)
T ss_pred cCCHHHHHHHHHHHHHhCCc
Confidence 99999999999999999983
No 8
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.98 E-value=8.1e-29 Score=270.39 Aligned_cols=443 Identities=21% Similarity=0.346 Sum_probs=344.8
Q ss_pred CCCCCHHHHHHH-------------HHHhcC-CChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004187 18 ADKYNVETAEIL-------------ANSALH-LPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL 83 (770)
Q Consensus 18 ~~P~d~~aw~~l-------------~~~~~~-~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL 83 (770)
+.|++.+.|..+ +.+... ..++.+|.+|..+|..||....+|+.|+.++.+.|+.+.+.++|+||+
T Consensus 27 ~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv 106 (577)
T KOG1258|consen 27 KYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGV 106 (577)
T ss_pred hCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 566666666554 333322 246779999999999999999999999999999999999999999999
Q ss_pred hhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHH
Q 004187 84 LICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRK 162 (770)
Q Consensus 84 ~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~ 162 (770)
...| ++++|..|+.+....+. +.+.++.+|++|+..+|.|+.|.++|..||+|+.. +++...+-.
T Consensus 107 ~aip~SvdlW~~Y~~f~~n~~~-----d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~---------qks~k~v~~ 172 (577)
T KOG1258|consen 107 QAIPLSVDLWLSYLAFLKNNNG-----DPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG---------QKSWKRVAN 172 (577)
T ss_pred HhhhhHHHHHHHHHHHHhccCC-----CHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc---------cccHHHHHH
Confidence 9999 89999999999887443 56779999999999999999999999999999843 567888999
Q ss_pred HHHHHHccccccHHHHHHHHHHHHHHhhH--------------hHHHH--------HHHH----------HhHHHHHH--
Q 004187 163 AYQRAVVTPTHHVEQLWKDYENFENSVSR--------------QLAKG--------LLSE----------YQSKYTSA-- 208 (770)
Q Consensus 163 vyqral~~P~~~~~~l~~~y~~fe~~~~~--------------~la~~--------ll~e----------~~~~y~~A-- 208 (770)
+|+|.+.+|.++....|..|..+.+.... .+.+. ..++ -.+.+..+
T Consensus 173 iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~ 252 (577)
T KOG1258|consen 173 IYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKT 252 (577)
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHH
Confidence 99999999999999999888888775211 11100 0000 00111111
Q ss_pred ----------------HHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHH
Q 004187 209 ----------------RAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYE 272 (770)
Q Consensus 209 ----------------~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye 272 (770)
..-..++..|++.+.+...++.|.. ..|+..|..|+.|+... +.+.++.-+|+
T Consensus 253 ~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~----~aql~nw~~yLdf~i~~-------g~~~~~~~l~e 321 (577)
T KOG1258|consen 253 ILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLD----QAQLKNWRYYLDFEITL-------GDFSRVFILFE 321 (577)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCccc----HHHHHHHHHHhhhhhhc-------ccHHHHHHHHH
Confidence 1112234556777887778887764 57889999999998754 46788999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcH
Q 004187 273 QCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALK-ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA 351 (770)
Q Consensus 273 ~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~-~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~ 351 (770)
+|+..|.++.++|+.|+.++...|+.+-|..++.++.+ .+|+...+++.++.+.+..|+++.|+.+|+++.+..|. ..
T Consensus 322 rcli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg-~v 400 (577)
T KOG1258|consen 322 RCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPG-LV 400 (577)
T ss_pred HHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCc-hh
Confidence 99999999999999999999999999999999999998 57899999999999999999999999999999998876 67
Q ss_pred HHHHHHHHHHHHhcCHHHHH---HHHHHHHcC---CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 004187 352 LAHIQFIRFLRRTEGVEAAR---KYFLDARKS---PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILE 425 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~---~~f~~Al~~---~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ 425 (770)
.+=..++.+++|.++.+.+. .++...... .......+++++.+.+.+.++.+.|+.++..++...|++..+|..
T Consensus 401 ~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~ 480 (577)
T KOG1258|consen 401 EVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLE 480 (577)
T ss_pred hhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHH
Confidence 77788899999999999988 555554432 223466788899998888899999999999999999999999999
Q ss_pred HHHHHHhcCCh---hHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 426 YADFLSRLNDD---RNIRALFERALSS-LPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 426 ya~~l~~~g~~---~~Ar~lferaL~~-~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
+++|+..++.. +-.--++...+.. .+.++...--.+|+.|-.-.|+.....+..++..+.+
T Consensus 481 ~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~~~~~~~~k~~ef~e~~g~~~~~~~~~~~~l~~~ 545 (577)
T KOG1258|consen 481 LIRFELIQPSGREYDLLEPIDWKELKMLIDFDDSRSSTDKYIEFLEWFGIDHKGAQDERPHLKNF 545 (577)
T ss_pred HHHHHHhCCcchhhhhhhhHHHHHHhhhccccccccchHHHHHHHHhccchhHhHhhchHHHHHH
Confidence 99999987632 2122233333331 1222222222336777777788766666555555433
No 9
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.97 E-value=3.2e-28 Score=263.58 Aligned_cols=369 Identities=19% Similarity=0.258 Sum_probs=315.9
Q ss_pred CCCCHHHHHHHHHHhcCC-ChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHH
Q 004187 19 DKYNVETAEILANSALHL-PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYI 96 (770)
Q Consensus 19 ~P~d~~aw~~l~~~~~~~-~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~ 96 (770)
.-+-...|..-++.+... -++=||.+|..+|+.||....+|...+.++...|..+....+|++++..|| ...+|++|+
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~a 591 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYA 591 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHH
Confidence 344567788887766554 578899999999999999999999999999999999999999999999999 678999999
Q ss_pred HHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccH
Q 004187 97 RFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHV 175 (770)
Q Consensus 97 ~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~ 175 (770)
+--...++ ...++.++..+.++ +|+|..||..-+.++.. +..++.||.+|.+|-.. |.
T Consensus 592 ke~w~agd------v~~ar~il~~af~~---~pnseeiwlaavKle~e---------n~e~eraR~llakar~~sgT--- 650 (913)
T KOG0495|consen 592 KEKWKAGD------VPAARVILDQAFEA---NPNSEEIWLAAVKLEFE---------NDELERARDLLAKARSISGT--- 650 (913)
T ss_pred HHHHhcCC------cHHHHHHHHHHHHh---CCCcHHHHHHHHHHhhc---------cccHHHHHHHHHHHhccCCc---
Confidence 98887665 45778888877776 67888999998888653 45677777777777543 22
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCC
Q 004187 176 EQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNP 255 (770)
Q Consensus 176 ~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~ 255 (770)
+. +|.+++.++...
T Consensus 651 eR-----------------------------------------------------------------v~mKs~~~er~l- 664 (913)
T KOG0495|consen 651 ER-----------------------------------------------------------------VWMKSANLERYL- 664 (913)
T ss_pred ch-----------------------------------------------------------------hhHHHhHHHHHh-
Confidence 22 455555554321
Q ss_pred CCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHH
Q 004187 256 QRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAA 335 (770)
Q Consensus 256 ~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A 335 (770)
...+.++.++++||+.+|++..+|+.+++++.+.++++.|++.|..+++.||.+..||+.++.++++.|+.-+|
T Consensus 665 ------d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 665 ------DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred ------hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 23345667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 336 KKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 336 ~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
|.+++++.-.+|. +..+|+..++++.|.|+.+.|..+..+|++..+.+..+|.....|+-.- ++ +..+.-++++
T Consensus 739 R~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~-~r----kTks~DALkk 812 (913)
T KOG0495|consen 739 RSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP-QR----KTKSIDALKK 812 (913)
T ss_pred HHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc-cc----chHHHHHHHh
Confidence 9999999999998 7899999999999999999999999999999998889999888876553 33 4566788999
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 004187 416 FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 488 (770)
Q Consensus 416 ~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~ 488 (770)
+-+++-+.+.-+.+++....+++||..|+||++..| +..+.|.-|..||..+|.-+.-..++.+....-|.
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~--d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP--DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC--ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999998 88999999999999999998888999988888883
No 10
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.96 E-value=8.2e-26 Score=244.94 Aligned_cols=422 Identities=20% Similarity=0.333 Sum_probs=288.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhcc--CcchHHHHHHHHH
Q 004187 43 PIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKK--GTEGQEETRKAFD 119 (770)
Q Consensus 43 ~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~--~~~~~e~ar~~~e 119 (770)
-.||.=|.++|.+...|..||++... .-..+...+|+|++...| +..+|..|++.-...-... .....+.+.+.|+
T Consensus 14 vpfEeEilRnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~e 92 (835)
T KOG2047|consen 14 VPFEEEILRNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFE 92 (835)
T ss_pred cchHHHHHcCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Confidence 35888899999999999999998765 667788999999999999 8899999997766543222 2356789999999
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhH-hHHHHH
Q 004187 120 FMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSR-QLAKGL 197 (770)
Q Consensus 120 ~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~-~la~~l 197 (770)
++|..+...| .||.+|++|+.. +++++..|.+|.+||.. |..++..+|.-|.+|.....- ..+...
T Consensus 93 r~lv~mHkmp---RIwl~Ylq~l~~---------Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 93 RCLVFMHKMP---RIWLDYLQFLIK---------QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred HHHHHHhcCC---HHHHHHHHHHHh---------cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 9999865444 799999999975 68899999999999988 999999999999999886432 111111
Q ss_pred HHHHhHHHHHHH----HHH-------HHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhH
Q 004187 198 LSEYQSKYTSAR----AVY-------RERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKR 266 (770)
Q Consensus 198 l~e~~~~y~~A~----~v~-------k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r 266 (770)
+..+.+-.-+++ ..+ ...+.+...|++.-. +...+ .....+|..+.++...||..+.. -.
T Consensus 161 yrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f-~sk~g----kSn~qlw~elcdlis~~p~~~~s----ln 231 (835)
T KOG2047|consen 161 YRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEF-VSKKG----KSNHQLWLELCDLISQNPDKVQS----LN 231 (835)
T ss_pred HHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhh-hhhcc----cchhhHHHHHHHHHHhCcchhcc----cC
Confidence 111110000010 000 001112222222111 11111 11235888888877777654411 11
Q ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------------------
Q 004187 267 IIFTYEQCLMYLYHY-PDIWYDYATWNAKSGSIDAAIKVFQRAL------------------------------------ 309 (770)
Q Consensus 267 ~~~~ye~aL~~~p~~-~~~w~~~a~~l~~~g~~e~A~~v~erAi------------------------------------ 309 (770)
+-.++++.+...++- ..+|..+|++|++.|.+++|+++|+.++
T Consensus 232 vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~ 311 (835)
T KOG2047|consen 232 VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESG 311 (835)
T ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 222344444444432 2345555555555555555555555543
Q ss_pred ---------------------------------------------------------------Hh-CCC-----cHHHHH
Q 004187 310 ---------------------------------------------------------------KA-LPD-----SEMLRY 320 (770)
Q Consensus 310 ---------------------------------------------------------------~~-~P~-----s~~lw~ 320 (770)
+. +|. -..+|.
T Consensus 312 n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 312 NEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWV 391 (835)
T ss_pred ChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHH
Confidence 32 121 124677
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC--------------
Q 004187 321 AFAELEESRGAIAAAKKLYESLLTDSVNT---TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF-------------- 383 (770)
Q Consensus 321 ~~a~~~~~~g~~e~A~~iye~al~~~p~~---~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~-------------- 383 (770)
.+|.+|+..|+.+.||.+|+++++..-.. ...+|+.++..+.++.+++.|+.+.++|+-.|..
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 88888888888888888888888764332 3568888888888888888888888888754321
Q ss_pred ----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHH
Q 004187 384 ----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVW 459 (770)
Q Consensus 384 ----~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw 459 (770)
+..+|..++.++-.+ |-++..+++|++.+..---.|.+..+|+.|+....-++++.++|||.+..++.....+||
T Consensus 472 rlhrSlkiWs~y~DleEs~-gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESL-GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HHHHhHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 355677777777765 888888888888888877788888888888888888888888888888888777788899
Q ss_pred HHHHH-HHHHcC--CHHHHHHHHHHHHHhcc
Q 004187 460 KRFTQ-FEQMYG--DLDSTLKVEQRRKEALS 487 (770)
Q Consensus 460 ~~~~~-fE~~~G--d~~~~~k~~~R~~~~~~ 487 (770)
.-|+. |-.++| .++.++.++.++.+.+|
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 88875 555666 56788888888888887
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.8e-24 Score=231.79 Aligned_cols=391 Identities=15% Similarity=0.159 Sum_probs=316.0
Q ss_pred hhhhccccCCCCCHHHHHHHHHHhcC-CChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 004187 10 SEENITGVADKYNVETAEILANSALH-LPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ 88 (770)
Q Consensus 10 ~e~~i~~~~~P~d~~aw~~l~~~~~~-~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~ 88 (770)
.+..|+ ++|.-.+++..+++.+.. +++++|...|+.++++.|+..+.|+.++..+...|+.+.|.++|..+|..+|+
T Consensus 105 ~~~a~r--~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~ 182 (966)
T KOG4626|consen 105 SLLAIR--KNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD 182 (966)
T ss_pred hhhhhh--ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc
Confidence 345777 899999999999997765 58999999999999999999999999999999999999999999999999984
Q ss_pred -hHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHH
Q 004187 89 -VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRA 167 (770)
Q Consensus 89 -~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqra 167 (770)
....-....+.+..+. .+++...|.+|++. +|.-.-.|.++.-.+.. ++.+..+..-|++|
T Consensus 183 l~ca~s~lgnLlka~Gr------l~ea~~cYlkAi~~---qp~fAiawsnLg~~f~~---------~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 183 LYCARSDLGNLLKAEGR------LEEAKACYLKAIET---QPCFAIAWSNLGCVFNA---------QGEIWLAIQHYEEA 244 (966)
T ss_pred hhhhhcchhHHHHhhcc------cchhHHHHHHHHhh---CCceeeeehhcchHHhh---------cchHHHHHHHHHHh
Confidence 5555555666665554 46888899988875 66556689987766553 67899999999999
Q ss_pred Hcc-ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHH
Q 004187 168 VVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR 246 (770)
Q Consensus 168 l~~-P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~ 246 (770)
++. |.. .+ +|...-+- +. ....|++|...|.+ ++ .+.|... ..+
T Consensus 245 vkldP~f-~d----AYiNLGnV---------~k-e~~~~d~Avs~Y~r------Al-----~lrpn~A-------~a~-- 289 (966)
T KOG4626|consen 245 VKLDPNF-LD----AYINLGNV---------YK-EARIFDRAVSCYLR------AL-----NLRPNHA-------VAH-- 289 (966)
T ss_pred hcCCCcc-hH----HHhhHHHH---------HH-HHhcchHHHHHHHH------HH-----hcCCcch-------hhc--
Confidence 998 543 11 22222110 00 02334555555443 33 2333211 011
Q ss_pred HHHHHHcCCCCC-CcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 247 LLTFEKGNPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAEL 325 (770)
Q Consensus 247 yi~~ek~n~~~l-d~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~ 325 (770)
+|-..+ -..+..+-++..|++||...|++++++..+|..+...|+..+|.+.|.+|+..+|+..+....+|.+
T Consensus 290 ------gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 290 ------GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred ------cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 111111 1124566789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHH
Q 004187 326 EESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLA 405 (770)
Q Consensus 326 ~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A 405 (770)
+...|.++.|..+|+++++..|. .+.++..++-.+..+|++++|+..|++|+...|...++|.+++..+-.. |+.+.|
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~-g~v~~A 441 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM-GDVSAA 441 (966)
T ss_pred HHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh-hhHHHH
Confidence 99999999999999999999998 8899999999999999999999999999999999999999999986664 999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 004187 406 HNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQF 465 (770)
Q Consensus 406 ~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~f 465 (770)
..+|++++..+|..++.+.+.+.++...|+..+|.+.|+.||+.-| +..+.+...+.-
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP--DfpdA~cNllh~ 499 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP--DFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC--CCchhhhHHHHH
Confidence 9999999999999999999999999999999999999999999888 555555444443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=3.4e-24 Score=231.14 Aligned_cols=361 Identities=15% Similarity=0.096 Sum_probs=298.2
Q ss_pred hhhhccccCCCCCHHHHHHHHHHhcC-CChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 004187 10 SEENITGVADKYNVETAEILANSALH-LPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ 88 (770)
Q Consensus 10 ~e~~i~~~~~P~d~~aw~~l~~~~~~-~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~ 88 (770)
++..|+ .+|..+++|+.++..+.. ++.+.|-.+|-.+|+.+|...-+...++.+....|..++|...|.++++..|.
T Consensus 139 y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 139 YRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC 216 (966)
T ss_pred HHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc
Confidence 345677 999999999999887765 58999999999999999999999999999999999999999999999999996
Q ss_pred h-HHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHH
Q 004187 89 V-PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRA 167 (770)
Q Consensus 89 ~-~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqra 167 (770)
. -.|-..+......++ +..+.+-|++|+. .||+-.+.+..+...+++ -..++.|...|++|
T Consensus 217 fAiawsnLg~~f~~~Ge------i~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke---------~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGE------IWLAIQHYEEAVK---LDPNFLDAYINLGNVYKE---------ARIFDRAVSCYLRA 278 (966)
T ss_pred eeeeehhcchHHhhcch------HHHHHHHHHHhhc---CCCcchHHHhhHHHHHHH---------HhcchHHHHHHHHH
Confidence 4 679888888877665 5688899997765 588877888888877663 57789999999999
Q ss_pred Hcc-ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHH
Q 004187 168 VVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR 246 (770)
Q Consensus 168 l~~-P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~ 246 (770)
+.. |.+....-=..-..+| ++..+-|+..|++ . +.+.|... ..+..
T Consensus 279 l~lrpn~A~a~gNla~iYye---------------qG~ldlAI~~Ykr------a-----l~~~P~F~-------~Ay~N 325 (966)
T KOG4626|consen 279 LNLRPNHAVAHGNLACIYYE---------------QGLLDLAIDTYKR------A-----LELQPNFP-------DAYNN 325 (966)
T ss_pred HhcCCcchhhccceEEEEec---------------cccHHHHHHHHHH------H-----HhcCCCch-------HHHhH
Confidence 987 7653210000000011 3455567777765 2 23444321 23333
Q ss_pred HHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004187 247 LLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELE 326 (770)
Q Consensus 247 yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~ 326 (770)
+..-.+. .+....+...|.+||..+|++++....++.++.+.|.+++|..+|++++..+|.....+..+|.++
T Consensus 326 lanALkd-------~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 326 LANALKD-------KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIY 398 (966)
T ss_pred HHHHHHh-------ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHH
Confidence 3332221 133456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 004187 327 ESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAH 406 (770)
Q Consensus 327 ~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~ 406 (770)
.++|++++|...|+.+|.+.|. .++++..+++.+..+|+..+|.+.|.+||..+|...++..++|.+ |+..|++.+|+
T Consensus 399 kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi-~kDsGni~~AI 476 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASI-YKDSGNIPEAI 476 (966)
T ss_pred HhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHH-hhccCCcHHHH
Confidence 9999999999999999999998 899999999999999999999999999999999999999999998 45569999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHh
Q 004187 407 NVFEAGLKRFMHEPAYILEYADFLSR 432 (770)
Q Consensus 407 ~ife~alk~~p~~~~~~l~ya~~l~~ 432 (770)
.-|+.+|+..||.|+.+.+.+..+.-
T Consensus 477 ~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 477 QSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHHHHccCCCCchhhhHHHHHHHH
Confidence 99999999999999988777665543
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=6.5e-22 Score=241.84 Aligned_cols=412 Identities=14% Similarity=0.080 Sum_probs=285.3
Q ss_pred hhhhccccCCCCCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-
Q 004187 10 SEENITGVADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL- 87 (770)
Q Consensus 10 ~e~~i~~~~~P~d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p- 87 (770)
+++-+. ..|.+...|..++..+ ..+++++|...|++++...|.+...|..++..+...|++++|..+|++++...|
T Consensus 454 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 531 (899)
T TIGR02917 454 AKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531 (899)
T ss_pred HHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC
Confidence 444555 7899999999998855 456899999999999999999999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHH
Q 004187 88 QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRA 167 (770)
Q Consensus 88 ~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqra 167 (770)
+...|..++......++ .+.+...|++++.. +|.+...|...+.... ..++.+.|..+|+++
T Consensus 532 ~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 532 NLRAILALAGLYLRTGN------EEEAVAWLEKAAEL---NPQEIEPALALAQYYL---------GKGQLKKALAILNEA 593 (899)
T ss_pred cHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHh---CccchhHHHHHHHHHH---------HCCCHHHHHHHHHHH
Confidence 68888888888877554 67889999988775 5666677777777654 356788899999999
Q ss_pred Hcc-ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHH
Q 004187 168 VVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR 246 (770)
Q Consensus 168 l~~-P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~ 246 (770)
+.. |... ..|........ ..++++.|...|++. +. ..|... ..|..
T Consensus 594 ~~~~~~~~--~~~~~l~~~~~-------------~~~~~~~A~~~~~~~------~~-----~~~~~~-------~~~~~ 640 (899)
T TIGR02917 594 ADAAPDSP--EAWLMLGRAQL-------------AAGDLNKAVSSFKKL------LA-----LQPDSA-------LALLL 640 (899)
T ss_pred HHcCCCCH--HHHHHHHHHHH-------------HcCCHHHHHHHHHHH------HH-----hCCCCh-------HHHHH
Confidence 876 4431 23332222111 134556666655541 11 112111 13333
Q ss_pred HHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004187 247 LLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELE 326 (770)
Q Consensus 247 yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~ 326 (770)
+....... +..+.+...|++++..+|++...|..++.++...|++++|.++++++....|.+...+..++.++
T Consensus 641 l~~~~~~~-------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 641 LADAYAVM-------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713 (899)
T ss_pred HHHHHHHc-------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHH
Confidence 33222111 23345566777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 004187 327 ESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAH 406 (770)
Q Consensus 327 ~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~ 406 (770)
...|++++|...|++++...|. . .++..++..+.+.|++++|...++++++..+.+..++..++.+.... |+.++|.
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~ 790 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRAPS-S-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ-KDYDKAI 790 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhCCC-c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-cCHHHHH
Confidence 7777777777777777776665 2 55666666667777777777777777766666666666666665553 7777777
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 407 NVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 407 ~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
++|+++++.+|+++.++..++..+...|+ .+|..++++++...| ++..+|..++.+....|+.+.+.+.++++.+..
T Consensus 791 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 791 KHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP--NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777777777777777777777777766 667777777777665 445566666666666777777777777777766
Q ss_pred c
Q 004187 487 S 487 (770)
Q Consensus 487 ~ 487 (770)
|
T Consensus 868 ~ 868 (899)
T TIGR02917 868 P 868 (899)
T ss_pred C
Confidence 6
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=1.8e-21 Score=237.94 Aligned_cols=412 Identities=16% Similarity=0.093 Sum_probs=341.7
Q ss_pred hhhhccccCCCCCHHHHHHHHHH-hcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-
Q 004187 10 SEENITGVADKYNVETAEILANS-ALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL- 87 (770)
Q Consensus 10 ~e~~i~~~~~P~d~~aw~~l~~~-~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p- 87 (770)
+++.+. .+|.+...+..++.. ...+++++|..++++++..+|.+...|..++..+...|++++|..+|++++...|
T Consensus 420 ~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 420 LETAAQ--LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHh--hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 455666 788888888887764 4567899999999999999999999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHH
Q 004187 88 QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRA 167 (770)
Q Consensus 88 ~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqra 167 (770)
+...|..++......++ .+.+.+.|++++.. +|.+..+|..+..+... .++.++++..|+++
T Consensus 498 ~~~~~~~la~~~~~~g~------~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 498 FFPAAANLARIDIQEGN------PDDAIQRFEKVLTI---DPKNLRAILALAGLYLR---------TGNEEEAVAWLEKA 559 (899)
T ss_pred cHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHH
Confidence 67888888888776554 68899999988875 56677888888877543 56789999999999
Q ss_pred Hcc-ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHH
Q 004187 168 VVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR 246 (770)
Q Consensus 168 l~~-P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~ 246 (770)
+.. |... . .+........ ..+++.+|..++++. +. ..|.. ...|..
T Consensus 560 ~~~~~~~~-~-~~~~l~~~~~-------------~~~~~~~A~~~~~~~------~~-----~~~~~-------~~~~~~ 606 (899)
T TIGR02917 560 AELNPQEI-E-PALALAQYYL-------------GKGQLKKALAILNEA------AD-----AAPDS-------PEAWLM 606 (899)
T ss_pred HHhCccch-h-HHHHHHHHHH-------------HCCCHHHHHHHHHHH------HH-----cCCCC-------HHHHHH
Confidence 977 4432 2 2222222111 146677787777652 11 12221 135665
Q ss_pred HHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004187 247 LLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELE 326 (770)
Q Consensus 247 yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~ 326 (770)
+....... +..+.++..|++++...|.++.+|..++.++...|++++|..+|++++...|++...|+.++.++
T Consensus 607 l~~~~~~~-------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 607 LGRAQLAA-------GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHc-------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 55433221 34567888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 004187 327 ESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAH 406 (770)
Q Consensus 327 ~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~ 406 (770)
...|++++|..+++++....+. ...+|..++..+...|++++|...|++++...+.. ..+..++.+.... |+.++|.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~ 756 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLAS-GNTAEAV 756 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHC-CCHHHHH
Confidence 9999999999999999998887 67889999999999999999999999999877654 6777788877775 9999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 407 NVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 407 ~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
+.++++++..|+++.++...+.++...|++++|..+|++++...| ++..++..++......|+ ..+...++++.+..
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP--DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999988 567788888888888899 77999999998877
Q ss_pred c
Q 004187 487 S 487 (770)
Q Consensus 487 ~ 487 (770)
|
T Consensus 834 ~ 834 (899)
T TIGR02917 834 P 834 (899)
T ss_pred C
Confidence 6
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=9.1e-20 Score=215.14 Aligned_cols=404 Identities=15% Similarity=0.090 Sum_probs=248.1
Q ss_pred HHHH-HhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhc
Q 004187 28 ILAN-SALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEK 105 (770)
Q Consensus 28 ~l~~-~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~ 105 (770)
..+. ....+++++|...|++++...|+ ..+|...+..+.+.|++++|...|++++...| +...|...+......++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~- 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK- 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-
Confidence 4444 33456899999999999999996 67899999999999999999999999999998 67899988888777665
Q ss_pred cCcchHHHHHHHHHHHHHhcCC---------------------------CCCChhhHHHHHHHHhhCCcCchHHHHHHHH
Q 004187 106 KGTEGQEETRKAFDFMLSHVGS---------------------------DISSGPIWLEYITFLKSLPALNAQEESQRMI 158 (770)
Q Consensus 106 ~~~~~~e~ar~~~e~aL~~ig~---------------------------dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~ 158 (770)
.+.+...|..++..-+. +|.....|.....++.... ..
T Consensus 210 -----~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~ 274 (615)
T TIGR00990 210 -----YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFR----------PK 274 (615)
T ss_pred -----HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcc----------CC
Confidence 45565555544332111 1111111111111110000 00
Q ss_pred HHHHHHHHHHcc-ccccHHHHHHHHHH-HHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChh
Q 004187 159 AIRKAYQRAVVT-PTHHVEQLWKDYEN-FENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYK 236 (770)
Q Consensus 159 ~ar~vyqral~~-P~~~~~~l~~~y~~-fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~ 236 (770)
.....+...+.. +.... .+...+.. .+. ...+.|+.|...|++ .+... ...|.
T Consensus 275 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~e~------------~~~~~y~~A~~~~~~------al~~~--~~~~~---- 329 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGN-GQLQLGLKSPES------------KADESYEEAARAFEK------ALDLG--KLGEK---- 329 (615)
T ss_pred cchhhhhccccccccccc-chHHHHHHHHHh------------hhhhhHHHHHHHHHH------HHhcC--CCChh----
Confidence 000001111111 11000 00111111 110 013455566666554 11110 01111
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 004187 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE 316 (770)
Q Consensus 237 ~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~ 316 (770)
....|.....+... .+..+.++..|++++..+|.+...|+.++.++...|++++|+..|++++...|++.
T Consensus 330 ---~a~a~~~lg~~~~~-------~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 399 (615)
T TIGR00990 330 ---EAIALNLRGTFKCL-------KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP 399 (615)
T ss_pred ---hHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 11123222222111 12345566777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004187 317 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAF 396 (770)
Q Consensus 317 ~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~ 396 (770)
.+|+.+|.++...|++++|...|++++...|. ...+|+.++..+.+.|++++|+..|+++++..+....+|..++.++.
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777777777777777777777776 56777777777777777777777777777776666777777777766
Q ss_pred hcCCCHHHHHHHHHHHHHhCCCcH------HHHHHHH-HHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHc
Q 004187 397 CQDKDPKLAHNVFEAGLKRFMHEP------AYILEYA-DFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMY 469 (770)
Q Consensus 397 ~~~g~~~~A~~ife~alk~~p~~~------~~~l~ya-~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~ 469 (770)
.. |++++|++.|+++++..|+.. ..++..+ .++...|++++|..+|++++...| ++...|..++......
T Consensus 479 ~~-g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p--~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 479 DQ-NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP--ECDIAVATMAQLLLQQ 555 (615)
T ss_pred Hc-cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHc
Confidence 64 777777777777777765421 1122222 233335777777777777777766 4445666777777777
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 004187 470 GDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 470 Gd~~~~~k~~~R~~~~~~ 487 (770)
|+.+.+.+.++++.+..+
T Consensus 556 g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 556 GDVDEALKLFERAAELAR 573 (615)
T ss_pred cCHHHHHHHHHHHHHHhc
Confidence 777777777777777655
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.4e-19 Score=227.15 Aligned_cols=407 Identities=14% Similarity=0.058 Sum_probs=299.8
Q ss_pred hcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---hHHHHHHHHH---HH--HHhh
Q 004187 33 ALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ---VPLWRCYIRF---IR--KVYE 104 (770)
Q Consensus 33 ~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~---~~lW~~y~~~---~~--~~~~ 104 (770)
...+++++|...|++++..+|.+..+|..++..+.+.|++++|...|++++...|+ ...|..++.. .. ....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999873 2345443321 00 0000
Q ss_pred -ccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHH
Q 004187 105 -KKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDY 182 (770)
Q Consensus 105 -~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y 182 (770)
.......+.+...|++++.. +|.+..++..+...+. ..++.++|...|++++.. |.+. ..+...
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~---~P~~~~a~~~Lg~~~~---------~~g~~~eA~~~y~~aL~~~p~~~--~a~~~L 425 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQV---DNTDSYAVLGLGDVAM---------ARKDYAAAERYYQQALRMDPGNT--NAVRGL 425 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence 00123478999999998886 6666677777766654 467899999999999987 6542 122111
Q ss_pred HHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcc
Q 004187 183 ENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYC-EEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTA 261 (770)
Q Consensus 183 ~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~-~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~ 261 (770)
..... ...+++|...++....-. ..+.. ....-....+......... .
T Consensus 426 ~~l~~--------------~~~~~~A~~~l~~l~~~~~~~~~~----------~~~~l~~~~~~~~a~~~~~-------~ 474 (1157)
T PRK11447 426 ANLYR--------------QQSPEKALAFIASLSASQRRSIDD----------IERSLQNDRLAQQAEALEN-------Q 474 (1157)
T ss_pred HHHHH--------------hcCHHHHHHHHHhCCHHHHHHHHH----------HHHHhhhhHHHHHHHHHHH-------C
Confidence 11100 112344443332200000 00000 0000000122222221111 1
Q ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 262 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
+..+.++..|++++..+|+++.+++.++.++...|++++|+..|++++...|++...++.++.++...++.++|...+++
T Consensus 475 g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 475 GKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34567888999999999999999999999999999999999999999999999999998888888878888888777665
Q ss_pred Hh----------------------------------------ccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC
Q 004187 342 LL----------------------------------------TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP 381 (770)
Q Consensus 342 al----------------------------------------~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~ 381 (770)
+. ...|. ...++..++..+.+.|++++|+.+|+++++..
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~-~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~ 633 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP-STRIDLTLADWAQQRGDYAAARAAYQRVLTRE 633 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 32 12333 45677888999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCch----hHHH
Q 004187 382 NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPE----ESIE 457 (770)
Q Consensus 382 ~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~----~~~~ 457 (770)
|.+..+++.++.++... |++++|+++|+++++..|+++.++..++..+...|++++|..+|++++...+.. ....
T Consensus 634 P~~~~a~~~la~~~~~~-g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 634 PGNADARLGLIEVDIAQ-GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL 712 (1157)
T ss_pred CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH
Confidence 88899999999987775 999999999999999999999999999999999999999999999999875422 1345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 458 VWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 458 lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
++...+.+....|+.+.+...++++....
T Consensus 713 ~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 713 VLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 67777888889999999999999998644
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.7e-19 Score=226.40 Aligned_cols=418 Identities=13% Similarity=0.071 Sum_probs=290.1
Q ss_pred CCCCCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHH----------------HHHHHHHHhcCCHHHHHHHHH
Q 004187 18 ADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFW----------------KQYVEAYMAVNNDDATKQLFS 80 (770)
Q Consensus 18 ~~P~d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W----------------~~yi~~e~~~~~~~~a~~ife 80 (770)
.+|+|++++...++.+ ..++.++|...+++++...|.+..+| +..+..+.+.|++++|..+|+
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 6899999998888855 45789999999999999999988775 445557778899999999999
Q ss_pred HHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHH
Q 004187 81 RCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIA 159 (770)
Q Consensus 81 RaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ 159 (770)
+++...| +..+-..|....... ....+.+++.|+++++. +|.+..++..+..++.. .++.++
T Consensus 137 ~~l~~~p~~~~la~~y~~~~~~~-----~g~~~~A~~~L~~ll~~---~P~~~~~~~~LA~ll~~---------~g~~~e 199 (1157)
T PRK11447 137 KLFNGAPPELDLAVEYWRLVAKL-----PAQRPEAINQLQRLNAD---YPGNTGLRNTLALLLFS---------SGRRDE 199 (1157)
T ss_pred HHccCCCCChHHHHHHHHHHhhC-----CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHc---------cCCHHH
Confidence 9998876 444333333332221 12467888888877775 67777888888877643 466788
Q ss_pred HHHHHHHHHcccccc--HHHHHHHHHHHHHHhhH---hHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 004187 160 IRKAYQRAVVTPTHH--VEQLWKDYENFENSVSR---QLAKGLLSEYQ--SKYTSARAVYRERKKYCEEIDWNMLAVPPT 232 (770)
Q Consensus 160 ar~vyqral~~P~~~--~~~l~~~y~~fe~~~~~---~la~~ll~e~~--~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~ 232 (770)
|...|++++..+... ...+|........ ... .....++..+. ..+..|...+.+ ... . ...|.
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~-~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~------~~~--~-~~dp~ 269 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMP-VSDASVAALQKYLQVFSDGDSVAAARSQLAE------QQK--Q-LADPA 269 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccC-CChhhHHHHHHHHHHCCCchHHHHHHHHHHH------HHH--h-ccCcc
Confidence 888888888764321 1223321111000 000 00001111000 011122222111 000 0 00111
Q ss_pred CChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004187 233 GSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL 312 (770)
Q Consensus 233 ~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~ 312 (770)
. .. ...-...+.. +..+.++..|++++..+|.++++|+.++.++...|++++|+..|+++++..
T Consensus 270 ~----~~---~~~G~~~~~~---------g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~ 333 (1157)
T PRK11447 270 F----RA---RAQGLAAVDS---------GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD 333 (1157)
T ss_pred h----HH---HHHHHHHHHC---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0 00 0001111111 245667889999999999999999999999999999999999999999998
Q ss_pred CCcHH------------HH--HHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004187 313 PDSEM------------LR--YAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDAR 378 (770)
Q Consensus 313 P~s~~------------lw--~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al 378 (770)
|++.. .| ...+..+...|++++|+..|+++++..|. ...+++.++..+...|++++|++.|++++
T Consensus 334 p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 334 PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 87642 11 23366677889999999999999999887 67888889999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHH------------------------------------------HHhcCCCHHHHHHHHHHHHHhC
Q 004187 379 KSPNFTYHVYVAYALM------------------------------------------AFCQDKDPKLAHNVFEAGLKRF 416 (770)
Q Consensus 379 ~~~~~~~~~yi~~a~l------------------------------------------e~~~~g~~~~A~~ife~alk~~ 416 (770)
+..+....++..++.+ +.. .|++++|+++|+++++.+
T Consensus 413 ~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 413 RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN-QGKWAQAAELQRQRLALD 491 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-CCCHHHHHHHHHHHHHhC
Confidence 8766655554443332 223 489999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004187 417 MHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRR 482 (770)
Q Consensus 417 p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~ 482 (770)
|+++.+++.++..+...|++++|..+|++++...| .+...+..++.+....|+.+.+...++++
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999888 55677777777777788888887776654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3.1e-19 Score=210.66 Aligned_cols=399 Identities=10% Similarity=-0.010 Sum_probs=287.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHH
Q 004187 57 KFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWL 136 (770)
Q Consensus 57 ~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~ 136 (770)
..++..+..+.+.|++++|...|++++...|+..+|...+......++ .+++.+.|+++|.. +|....+|.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~------~~~Ai~~~~~al~l---~p~~~~a~~ 198 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGD------WEKVVEDTTAALEL---DPDYSKALN 198 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC------HHHHHHHHHHHHHc---CCCCHHHHH
Confidence 457788999999999999999999999999988888877777776654 68899999988875 777778888
Q ss_pred HHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHH--HHHHHHHH
Q 004187 137 EYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYT--SARAVYRE 214 (770)
Q Consensus 137 ~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~--~A~~v~k~ 214 (770)
....... ..+++++|...|..++..+..........+...........+...+........ .....|..
T Consensus 199 ~~a~a~~---------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 199 RRANAYD---------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred HHHHHHH---------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 8776644 357788888888877766322111111111111000000001111110000000 00000000
Q ss_pred HHHH---HHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHH---cCCCHHHHHHH
Q 004187 215 RKKY---CEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMY---LYHYPDIWYDY 288 (770)
Q Consensus 215 ~~~~---~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~---~p~~~~~w~~~ 288 (770)
.... ...+.. ...+.+... ...+.+...+. +... ...++.++..|++++.. .|....+|..+
T Consensus 270 ~~~~~~~~~~~~~-~~~~~~~~~---~~~~~l~~~~~--e~~~------~~~y~~A~~~~~~al~~~~~~~~~a~a~~~l 337 (615)
T TIGR00990 270 SFRPKPRPAGLED-SNELDEETG---NGQLQLGLKSP--ESKA------DESYEEAARAFEKALDLGKLGEKEAIALNLR 337 (615)
T ss_pred HccCCcchhhhhc-ccccccccc---cchHHHHHHHH--Hhhh------hhhHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 0000 000000 001111100 11112222222 2211 13456678899999986 46777899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHH
Q 004187 289 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE 368 (770)
Q Consensus 289 a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e 368 (770)
+.++...|++++|+..|++++...|.+...|+.++.++...|++++|...|+++++.+|. ...+|+.++.++...|+++
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 369 AARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 369 ~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
+|+..|+++++..+.....|+.+|.+++.. |++++|...|+++++.+|+++.++..++..+..+|++++|...|++++.
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKE-GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 999999999999888889999999998885 9999999999999999999999999999999999999999999999999
Q ss_pred CCCchhH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 449 SLPPEES-----IEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 449 ~~p~~~~-----~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..|.... ..++.....+....|+++.+.+.++++.+..|
T Consensus 496 l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 496 LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 8773211 22333333343456999999999999988877
No 19
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.7e-19 Score=200.37 Aligned_cols=428 Identities=18% Similarity=0.245 Sum_probs=313.2
Q ss_pred CCCCCHHHHHHHHHHhc-CCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhcCChHHHH
Q 004187 18 ADKYNVETAEILANSAL-HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAV---NNDDATKQLFSRCLLICLQVPLWR 93 (770)
Q Consensus 18 ~~P~d~~aw~~l~~~~~-~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~---~~~~~a~~ifeRaL~~~p~~~lW~ 93 (770)
.|++++.....|+..+. .+++++.+..=..+...+|..+.+|+.|+..+... ++-.++..+|+++|..+.++.+|.
T Consensus 108 i~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~ 187 (881)
T KOG0128|consen 108 INSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWE 187 (881)
T ss_pred ccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHH
Confidence 79999999999988775 46888888888888899999999999999888753 577899999999999999999999
Q ss_pred HHHHHHHHHhhcc-CcchHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccc
Q 004187 94 CYIRFIRKVYEKK-GTEGQEETRKAFDFMLSHVGSDISSGP-IWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTP 171 (770)
Q Consensus 94 ~y~~~~~~~~~~~-~~~~~e~ar~~~e~aL~~ig~dp~s~~-lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P 171 (770)
-|+.|.....+.. ..++++..|.+|+++|+.+|.+...+. +|..|++|+.. |..+-..+.+...+.+.+..|
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~------~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVT------YLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHhcc
Confidence 9999998876532 237789999999999999999988774 99999999876 334445577889999999998
Q ss_pred cccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHH
Q 004187 172 THHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRE-RKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTF 250 (770)
Q Consensus 172 ~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~-~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ 250 (770)
+.....-|..+..++..+ ......+++.+..-.++ +..+++.+. .+......|..||+|
T Consensus 262 ~D~~~~~~~~~~~sk~h~--------~~~~~~~~~~a~~~l~~~~~~~e~~~q------------~~~~~~q~~~~yidf 321 (881)
T KOG0128|consen 262 LDEDTRGWDLSEQSKAHV--------YDVETKKLDDALKNLAKILFKFERLVQ------------KEPIKDQEWMSYIDF 321 (881)
T ss_pred chhhhhHHHHHHHHhcch--------HHHHhccHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHH
Confidence 543333333222222111 11112222333222121 112333221 122334689999999
Q ss_pred HHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 004187 251 EKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS-GSIDAAIKVFQRALKALPDSEMLRYAFAELEESR 329 (770)
Q Consensus 251 ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~-g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~ 329 (770)
++.+ +..-|+...+++++...+.+++.|+.|+.++-.. +=.+.+..++-|++..||....+|-.+-..+++.
T Consensus 322 e~~~-------G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~ 394 (881)
T KOG0128|consen 322 EKKS-------GDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERN 394 (881)
T ss_pred HHhc-------CCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhc
Confidence 9865 3455778899999999999999999999888543 4455678899999999999999998776444444
Q ss_pred Cc-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh------cCHHHHHHHHHHHHc-------C-CCCCHHHHHHHHHH
Q 004187 330 GA-IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT------EGVEAARKYFLDARK-------S-PNFTYHVYVAYALM 394 (770)
Q Consensus 330 g~-~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~------~~~e~A~~~f~~Al~-------~-~~~~~~~yi~~a~l 394 (770)
+. .......+++++... ...+..|..+.++. .+++..++.|+.|.. . .....++.-.||.+
T Consensus 395 re~~~vI~~~l~~~ls~~----~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~ 470 (881)
T KOG0128|consen 395 REEITVIVQNLEKDLSMT----VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQV 470 (881)
T ss_pred CcchhhHHHHHHHHHHHH----HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 33 333445555555532 22344444333333 335666777777753 2 33356777789999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHcCCH
Q 004187 395 AFCQDKDPKLAHNVFEAGLKRFMHEPA-YILEYADFLSRLNDDRNIRALFERALSSLP-PEESIEVWKRFTQFEQMYGDL 472 (770)
Q Consensus 395 e~~~~g~~~~A~~ife~alk~~p~~~~-~~l~ya~~l~~~g~~~~Ar~lferaL~~~p-~~~~~~lw~~~~~fE~~~Gd~ 472 (770)
|+...++.+.++.|+.-.+..-..+.. .|+.|++++...|+...+|.++.+|+.... +++...+...|..||..+|++
T Consensus 471 E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl 550 (881)
T KOG0128|consen 471 EASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTL 550 (881)
T ss_pred HHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccH
Confidence 998889999999999988887655554 999999999999999999999999998543 355778999999999999999
Q ss_pred HHHHHHHHHH
Q 004187 473 DSTLKVEQRR 482 (770)
Q Consensus 473 ~~~~k~~~R~ 482 (770)
+.+..+..+.
T Consensus 551 ~~~~~~~~~~ 560 (881)
T KOG0128|consen 551 ESFDLCPEKV 560 (881)
T ss_pred HHHhhhHHhh
Confidence 8876654433
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=2.7e-18 Score=202.88 Aligned_cols=329 Identities=13% Similarity=0.044 Sum_probs=262.7
Q ss_pred HHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcc
Q 004187 31 NSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTE 109 (770)
Q Consensus 31 ~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~ 109 (770)
+.++.+++.+|..+++.++...|.+...+..++......|+++.|...|++++...| +...|...+......++
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~----- 125 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ----- 125 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-----
Confidence 355668999999999999999999999999999999999999999999999999999 68899998888877665
Q ss_pred hHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHH
Q 004187 110 GQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENS 188 (770)
Q Consensus 110 ~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~ 188 (770)
.+.+.+.|++++.. +|.+..+|...+..+.. .++.+.|...|++++.. |.... .+.....+.
T Consensus 126 -~~~Ai~~l~~Al~l---~P~~~~a~~~la~~l~~---------~g~~~eA~~~~~~~~~~~P~~~~--a~~~~~~l~-- 188 (656)
T PRK15174 126 -YATVADLAEQAWLA---FSGNSQIFALHLRTLVL---------MDKELQAISLARTQAQEVPPRGD--MIATCLSFL-- 188 (656)
T ss_pred -HHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHH---------CCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHH--
Confidence 68899999988875 67777889888877653 57788999999988766 54322 221111111
Q ss_pred hhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHH-HHHcCCCCCCcchhhhHH
Q 004187 189 VSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLT-FEKGNPQRIDTASSNKRI 267 (770)
Q Consensus 189 ~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~-~ek~n~~~ld~~~~~~r~ 267 (770)
..+++.+|...+++. +. ..|... . ..+..... +.. .+..+.+
T Consensus 189 ------------~~g~~~eA~~~~~~~------l~-----~~~~~~----~--~~~~~l~~~l~~--------~g~~~eA 231 (656)
T PRK15174 189 ------------NKSRLPEDHDLARAL------LP-----FFALER----Q--ESAGLAVDTLCA--------VGKYQEA 231 (656)
T ss_pred ------------HcCCHHHHHHHHHHH------Hh-----cCCCcc----h--hHHHHHHHHHHH--------CCCHHHH
Confidence 146677777776641 11 111110 0 01111111 111 1234567
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 268 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDA----AIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 268 ~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~----A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
+..|++++...|.++.+++.++..+...|++++ |+..|++++...|++..++..++.++...|++++|...|++++
T Consensus 232 ~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 232 IQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 889999999999999999999999999999985 8999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 344 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 344 ~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
...|. ...++..++..+...|++++|+..|++++...+.....+...+.++.. .|+.++|.+.|+++++..|++.
T Consensus 312 ~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~-~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 312 ATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ-AGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhChhhc
Confidence 99998 788999999999999999999999999998877766666666666656 4999999999999999988853
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.5e-17 Score=200.37 Aligned_cols=412 Identities=12% Similarity=0.014 Sum_probs=299.9
Q ss_pred CCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHH
Q 004187 18 ADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYI 96 (770)
Q Consensus 18 ~~P~d~~aw~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~ 96 (770)
.+|.-+.-|..++. ..++.++|..+|++++...|.....|..++..+.+.|++++|..+|++++...| +.+.|...+
T Consensus 13 ~~~~~~~d~~~ia~--~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIAL--WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45666666666543 345789999999999998899999999999999999999999999999999998 688998888
Q ss_pred HHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccH
Q 004187 97 RFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHV 175 (770)
Q Consensus 97 ~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~ 175 (770)
......++ .+.+...+++++.. +|.+.. |..+...+. ..++.+.|...|++++.. |.+.
T Consensus 91 ~~l~~~g~------~~eA~~~l~~~l~~---~P~~~~-~~~la~~l~---------~~g~~~~Al~~l~~al~~~P~~~- 150 (765)
T PRK10049 91 LTLADAGQ------YDEALVKAKQLVSG---APDKAN-LLALAYVYK---------RAGRHWDELRAMTQALPRAPQTQ- 150 (765)
T ss_pred HHHHHCCC------HHHHHHHHHHHHHh---CCCCHH-HHHHHHHHH---------HCCCHHHHHHHHHHHHHhCCCCH-
Confidence 87776554 67888999988775 677777 887776654 356789999999999987 6642
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHH--HHHHHHHHHHHc
Q 004187 176 EQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQW--IAWKRLLTFEKG 253 (770)
Q Consensus 176 ~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~--~lw~~yi~~ek~ 253 (770)
.++..+..... ..+..+.|...+++ ... .|.. ...+ ......+.....
T Consensus 151 -~~~~~la~~l~-------------~~~~~e~Al~~l~~-----------~~~-~p~~----~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 151 -QYPTEYVQALR-------------NNRLSAPALGAIDD-----------ANL-TPAE----KRDLEADAAAELVRLSFM 200 (765)
T ss_pred -HHHHHHHHHHH-------------HCCChHHHHHHHHh-----------CCC-CHHH----HHHHHHHHHHHHHHhhcc
Confidence 22222222110 12233344443332 000 1100 0000 000000111110
Q ss_pred CCCCCC--cchhhhHHHHHHHHHHHHcCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHH
Q 004187 254 NPQRID--TASSNKRIIFTYEQCLMYLYHYPDI-------WYDYATWNAKSGSIDAAIKVFQRALKAL---PDSEMLRYA 321 (770)
Q Consensus 254 n~~~ld--~~~~~~r~~~~ye~aL~~~p~~~~~-------w~~~a~~l~~~g~~e~A~~v~erAi~~~---P~s~~lw~~ 321 (770)
. ...+ .-...++++..|+.++...|.+|+. ++.....+...|++++|+..|+++++.. |.....|
T Consensus 201 ~-~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~-- 277 (765)
T PRK10049 201 P-TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW-- 277 (765)
T ss_pred c-ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--
Confidence 0 0000 0011256777888888775555433 2332334567799999999999999875 4455555
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC---------------
Q 004187 322 FAELEESRGAIAAAKKLYESLLTDSVNT---TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF--------------- 383 (770)
Q Consensus 322 ~a~~~~~~g~~e~A~~iye~al~~~p~~---~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~--------------- 383 (770)
++.++...|++++|..+|+++++..|.. ....+..++..+.+.+++++|+.+++++....+.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5788999999999999999999877652 1355666666778899999999999999876431
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHH
Q 004187 384 TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFT 463 (770)
Q Consensus 384 ~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~ 463 (770)
...++...+.++... |+.++|.++|++++...|+++.+++.++..+...|++++|..++++++...| ++..++...+
T Consensus 358 ~~~a~~~~a~~l~~~-g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P--d~~~l~~~~a 434 (765)
T PRK10049 358 WLQGQSLLSQVAKYS-NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP--RNINLEVEQA 434 (765)
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CChHHHHHHH
Confidence 134556667766664 9999999999999999999999999999999999999999999999999999 6677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 464 QFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 464 ~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
......|+.+.++++++++.+..|
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC
Confidence 888899999999999999999999
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1e-17 Score=197.95 Aligned_cols=335 Identities=14% Similarity=0.018 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhh
Q 004187 56 AKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPI 134 (770)
Q Consensus 56 ~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~l 134 (770)
..--+..+...++.|+++.|..+++..+...| +.+.+...+......++ .+.+...|++++.. +|.+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~------~~~A~~~l~~~l~~---~P~~~~a 112 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQ------PDAVLQVVNKLLAV---NVCQPED 112 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCC------HHHHHHHHHHHHHh---CCCChHH
Confidence 33455677888899999999999999999999 68888888876665554 68999999988875 7888889
Q ss_pred HHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHH
Q 004187 135 WLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYR 213 (770)
Q Consensus 135 W~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k 213 (770)
|......+. ..++.+.|...|++++.. |... ..|..... +....++++.|...++
T Consensus 113 ~~~la~~l~---------~~g~~~~Ai~~l~~Al~l~P~~~--~a~~~la~-------------~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 113 VLLVASVLL---------KSKQYATVADLAEQAWLAFSGNS--QIFALHLR-------------TLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHH-------------HHHHCCChHHHHHHHH
Confidence 988877754 357899999999999987 6542 12211111 1112466777777665
Q ss_pred HHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCC-CHHHHHHHHHHH
Q 004187 214 ERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYH-YPDIWYDYATWN 292 (770)
Q Consensus 214 ~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~-~~~~w~~~a~~l 292 (770)
+. + ...|... ..|.....+... +..+.++..|++++...|. ....+...+..+
T Consensus 169 ~~------~-----~~~P~~~-------~a~~~~~~l~~~--------g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l 222 (656)
T PRK15174 169 TQ------A-----QEVPPRG-------DMIATCLSFLNK--------SRLPEDHDLARALLPFFALERQESAGLAVDTL 222 (656)
T ss_pred HH------H-----HhCCCCH-------HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 31 1 1123221 122222222221 2345677889999988764 344555667888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHH----HHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHH
Q 004187 293 AKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAA----AKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE 368 (770)
Q Consensus 293 ~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~----A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e 368 (770)
...|++++|+..|++++...|++..+++.+|.++...|++++ |...|+++++..|+ ...+|..++..+...|+++
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999985 89999999999998 7899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 369 AARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 369 ~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
+|+..|+++++..+....++..++.++... |++++|...|++++...|+.+.++...+..+...|+.++|...|+++++
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~-G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQV-GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999888888998898887775 9999999999999999999887777778889999999999999999999
Q ss_pred CCC
Q 004187 449 SLP 451 (770)
Q Consensus 449 ~~p 451 (770)
..|
T Consensus 381 ~~P 383 (656)
T PRK15174 381 ARA 383 (656)
T ss_pred hCh
Confidence 877
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=2.7e-17 Score=198.19 Aligned_cols=389 Identities=11% Similarity=0.017 Sum_probs=288.5
Q ss_pred CCCCCHHHHHHHHHHhc-CCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHH
Q 004187 18 ADKYNVETAEILANSAL-HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCY 95 (770)
Q Consensus 18 ~~P~d~~aw~~l~~~~~-~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y 95 (770)
.+|.+..+|..++..+. .+++++|..+|++++..+|.+..+|..++......|++++|..++++++...| +.. |..+
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 48888999999988665 46899999999999999999999999999999999999999999999999998 677 8888
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccH
Q 004187 96 IRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHV 175 (770)
Q Consensus 96 ~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~ 175 (770)
+......++ .+.+..+|++++.. +|.+..+|..++..+.. .+..+.|...+++++..|....
T Consensus 123 a~~l~~~g~------~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~---------~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 123 AYVYKRAGR------HWDELRAMTQALPR---APQTQQYPTEYVQALRN---------NRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred HHHHHHCCC------HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH---------CCChHHHHHHHHhCCCCHHHHH
Confidence 887776554 68999999988885 77888899888887653 3556778888888887664211
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHH-HHHHH
Q 004187 176 EQLWKDYENFENSVSRQLAKGLLSEYQSKY---TSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR-LLTFE 251 (770)
Q Consensus 176 ~~l~~~y~~fe~~~~~~la~~ll~e~~~~y---~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~-yi~~e 251 (770)
..-+..... .+...+.... ....+| ++|...++. +..... ..|.... .....+.. ...+.
T Consensus 185 ~l~~~~~~~---~~r~~~~~~~--~~~~r~~~ad~Al~~~~~---ll~~~~-----~~p~~~~---~~~~a~~d~l~~Ll 248 (765)
T PRK10049 185 DLEADAAAE---LVRLSFMPTR--SEKERYAIADRALAQYDA---LEALWH-----DNPDATA---DYQRARIDRLGALL 248 (765)
T ss_pred HHHHHHHHH---HHHhhccccc--ChhHHHHHHHHHHHHHHH---HHhhcc-----cCCccch---HHHHHHHHHHHHHH
Confidence 100000000 0000000000 001123 334443332 211111 1121110 00111111 11111
Q ss_pred HcCCCCCCcchhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHH
Q 004187 252 KGNPQRIDTASSNKRIIFTYEQCLMYL---YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS----EMLRYAFAE 324 (770)
Q Consensus 252 k~n~~~ld~~~~~~r~~~~ye~aL~~~---p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s----~~lw~~~a~ 324 (770)
.. ...+.++..|++++... |.+...| ++.++...|++++|+.+|++++...|.+ ...+..++.
T Consensus 249 ~~--------g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 249 AR--------DRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred Hh--------hhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 11 23456788999999875 4455556 4889999999999999999999988765 355666666
Q ss_pred HHHHhCcHHHHHHHHHHHhccCCCC--------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHH
Q 004187 325 LEESRGAIAAAKKLYESLLTDSVNT--------------TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 390 (770)
Q Consensus 325 ~~~~~g~~e~A~~iye~al~~~p~~--------------~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~ 390 (770)
.+...|++++|..++++++...|.. ...++..++..+...|++++|+.+|++++...|....+++.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~ 398 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID 398 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7788999999999999999876521 13466788889999999999999999999988888999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004187 391 YALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPP 452 (770)
Q Consensus 391 ~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~ 452 (770)
+|.++... |++++|.++++++++.+|+++.+++..+..+..+|++++|..+++++++..|.
T Consensus 399 lA~l~~~~-g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 399 YASVLQAR-GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99987775 99999999999999999999999999999999999999999999999999993
No 24
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.83 E-value=6.4e-17 Score=172.86 Aligned_cols=418 Identities=15% Similarity=0.166 Sum_probs=259.1
Q ss_pred hhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHH
Q 004187 39 AQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKA 117 (770)
Q Consensus 39 ~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~ 117 (770)
.++..+|.+++.+|+.|.++|..|+.++.+.+.+.++.++|..||..|| ++++|+..+.|+.+.+. +++.+|.+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~-----ni~saRal 162 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL-----NIESARAL 162 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc-----chHHHHHH
Confidence 4567899999999999999999999999999999999999999999999 78999999999999875 48999999
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHhhCCcC----------ch--H-HHHHHHHHHHHHHHHHHcc---ccccHH-HHHH
Q 004187 118 FDFMLSHVGSDISSGPIWLEYITFLKSLPAL----------NA--Q-EESQRMIAIRKAYQRAVVT---PTHHVE-QLWK 180 (770)
Q Consensus 118 ~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~----------~~--~-~~~~~~~~ar~vyqral~~---P~~~~~-~l~~ 180 (770)
|.++|+. +|.|..+|.+|++++...... +. . ++..+.+.+-.+|-..+.. +....+ ....
T Consensus 163 flrgLR~---npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~ 239 (568)
T KOG2396|consen 163 FLRGLRF---NPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAE 239 (568)
T ss_pred HHHHhhc---CCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHH
Confidence 9999986 889999999999998753210 00 0 1111111121111111111 111110 0000
Q ss_pred HHHHHHHHhhHhHHHHHHHHHhHH--------HHHHHHHHHH--------------------HHHHHHHhhhhccCCCCC
Q 004187 181 DYENFENSVSRQLAKGLLSEYQSK--------YTSARAVYRE--------------------RKKYCEEIDWNMLAVPPT 232 (770)
Q Consensus 181 ~y~~fe~~~~~~la~~ll~e~~~~--------y~~A~~v~k~--------------------~~~~~~~L~~~~~~v~p~ 232 (770)
-..|. +.+.+.+++..+.+ ..-|.+.+.= ...++..+....+.
T Consensus 240 -~~d~~----kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~---- 310 (568)
T KOG2396|consen 240 -KFDFL----KELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK---- 310 (568)
T ss_pred -HHHHH----HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH----
Confidence 00111 11122222211110 0111111000 00011111111111
Q ss_pred CChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh
Q 004187 233 GSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRAL-KA 311 (770)
Q Consensus 233 ~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi-~~ 311 (770)
.-....+|..||.+-...-..+ ......+++.+|+.+.......+...-.|+..+.......+++.+-+... ..
T Consensus 311 ----~l~t~sm~e~YI~~~lE~~~~~-r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~ 385 (568)
T KOG2396|consen 311 ----TLPTESMWECYITFCLERFTFL-RGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL 385 (568)
T ss_pred ----HhhHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH
Confidence 1223468888887533211011 11234456778888887776666666666666666656666777777766 56
Q ss_pred CCCcHHHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHcCCCC-C
Q 004187 312 LPDSEMLRYAFAELEES-RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGV-----EAARKYFLDARKSPNF-T 384 (770)
Q Consensus 312 ~P~s~~lw~~~a~~~~~-~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~-----e~A~~~f~~Al~~~~~-~ 384 (770)
.-++..+|+.+...... ..+++-......-.++..+. .+.|+.+.... +...+ +.....+..+...... .
T Consensus 386 f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~--s~~~~~w~s~~-~~dsl~~~~~~~Ii~a~~s~~~~~~~tl 462 (568)
T KOG2396|consen 386 FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVC--SELLISWASAS-EGDSLQEDTLDLIISALLSVIGADSVTL 462 (568)
T ss_pred hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhc--chhHHHHHHHh-hccchhHHHHHHHHHHHHHhcCCceeeh
Confidence 77899999887776653 33332211111111222221 23344333222 11112 2223333333332222 2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCchhHHHHHHHH
Q 004187 385 YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN--DDRNIRALFERALSSLPPEESIEVWKRF 462 (770)
Q Consensus 385 ~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g--~~~~Ar~lferaL~~~p~~~~~~lw~~~ 462 (770)
...|+.++. . .+-.+.|+++|.+.....|-+..++..+++++..+. +..++|.+|++|+..+. ...++|..|
T Consensus 463 ~s~~l~~~~---e-~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y 536 (568)
T KOG2396|consen 463 KSKYLDWAY---E-SGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDY 536 (568)
T ss_pred hHHHHHHHH---H-hcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHH
Confidence 345666543 3 488999999999999999999999999999998763 58999999999999998 678999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 463 TQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 463 ~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..+|..+|..+++..+++|+.+.+.
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~ktl~ 561 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKTLQ 561 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHhhC
Confidence 9999999999999999999999997
No 25
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.82 E-value=5.7e-17 Score=174.15 Aligned_cols=400 Identities=15% Similarity=0.231 Sum_probs=286.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHh
Q 004187 46 EQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSH 124 (770)
Q Consensus 46 e~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ 124 (770)
++-++.+|++...|..+|+-+... .+++++..|++.+..+| +...|..|++-+...++ ++.+.++|.+||..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skd------fe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKD------FESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhh------HHHHHHHHHHHHHH
Confidence 677899999999999999877665 99999999999999999 57999999999998775 79999999999987
Q ss_pred cCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-c-cccHHHHHHHHHHHHHHhhHhHHHHHHHHHh
Q 004187 125 VGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-P-THHVEQLWKDYENFENSVSRQLAKGLLSEYQ 202 (770)
Q Consensus 125 ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P-~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~ 202 (770)
+ .+.++|..|+.+........ .+.-....+.|+-++.. - ......+|.+|..|.+.+... +-.++ +
T Consensus 83 v----LnlDLW~lYl~YVR~~~~~~----~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~---gk~ee-~ 150 (656)
T KOG1914|consen 83 V----LNLDLWKLYLSYVRETKGKL----FGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAV---GKYEE-N 150 (656)
T ss_pred H----hhHhHHHHHHHHHHHHccCc----chHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccccc---ccHHH-H
Confidence 4 35689999999987643211 11123455667777754 2 123357899999998764221 11112 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCC----CC--CcchhhhHHHHHHHHHHH
Q 004187 203 SKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ----RI--DTASSNKRIIFTYEQCLM 276 (770)
Q Consensus 203 ~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~----~l--d~~~~~~r~~~~ye~aL~ 276 (770)
.+....|++|++ +| .. |-.. .-.+|+.|..||..-.. ++ +....+-.++.+|++...
T Consensus 151 QRI~~vRriYqr------al-----~t-Pm~n-----lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~ 213 (656)
T KOG1914|consen 151 QRITAVRRIYQR------AL-----VT-PMHN-----LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQN 213 (656)
T ss_pred HHHHHHHHHHHH------Hh-----cC-cccc-----HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 255556666664 33 22 2221 22599999999975211 11 122233334444544432
Q ss_pred H-------cCC-----------CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 004187 277 Y-------LYH-----------YPDIWYDYATWNAKSGS--------IDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330 (770)
Q Consensus 277 ~-------~p~-----------~~~~w~~~a~~l~~~g~--------~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g 330 (770)
. .|. -.++|..++.|..+++- .....-+|++++...+-+.++|+.++.++...+
T Consensus 214 lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s 293 (656)
T KOG1914|consen 214 LTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS 293 (656)
T ss_pred HHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Confidence 1 121 12579999999987652 123556899999999999999999999988877
Q ss_pred c--------------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcC---HHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 004187 331 A--------------IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG---VEAARKYFLDARKSPNFT-YHVYVAYA 392 (770)
Q Consensus 331 ~--------------~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~---~e~A~~~f~~Al~~~~~~-~~~yi~~a 392 (770)
+ -+++.++|++++......+..+++.++.++...-+ .+..-.++++++...... .-+|+.+.
T Consensus 294 ~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~m 373 (656)
T KOG1914|consen 294 DLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYM 373 (656)
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHH
Confidence 7 68899999999986655467788999998876544 777888888888754332 23455554
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcC
Q 004187 393 LMAFCQDKDPKLAHNVFEAGLKRF--MHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 393 ~le~~~~g~~~~A~~ife~alk~~--p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~G 470 (770)
....+. ..++.||.+|.++-+.- ++..-+...++.|+. .++.+-|..+|+-.|+.++ ++...-..|+.|....+
T Consensus 374 n~irR~-eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lN 449 (656)
T KOG1914|consen 374 NFIRRA-EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLN 449 (656)
T ss_pred HHHHHh-hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhC
Confidence 443443 67889999999998863 333333334444433 4688899999999999998 88899999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 004187 471 DLDSTLKVEQRRKEA 485 (770)
Q Consensus 471 d~~~~~k~~~R~~~~ 485 (770)
+-..++.+++|..+.
T Consensus 450 dd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 450 DDNNARALFERVLTS 464 (656)
T ss_pred cchhHHHHHHHHHhc
Confidence 999999999999887
No 26
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.80 E-value=8.3e-19 Score=203.99 Aligned_cols=211 Identities=25% Similarity=0.322 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC----CcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004187 299 DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN----TTALAHIQFIRFLRRTEGVEAARKYF 374 (770)
Q Consensus 299 e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~----~~~~~w~~~~~~~~r~~~~e~A~~~f 374 (770)
.+..+-|+|.+...|++..+|+.|+.++.+.+++++||+++++||..... ...++|++|.+++.-.|.-+...++|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34567899999999999999999999999999999999999999986532 24689999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchh
Q 004187 375 LDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE 454 (770)
Q Consensus 375 ~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~ 454 (770)
+||.+.++. +.+|..+.-++.. ...+++|-++|+.++++|.....+|..|++|++++++-+.||.+++|||+.+|..+
T Consensus 1521 eRAcqycd~-~~V~~~L~~iy~k-~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1521 ERACQYCDA-YTVHLKLLGIYEK-SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHhcch-HHHHHHHHHHHHH-hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 999997764 8899998888666 48999999999999999998999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccchhhhhHHhhhhhcccCCCCCCChhhhhhHHHHHHHHH
Q 004187 455 SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVK 532 (770)
Q Consensus 455 ~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~~e~~~~~~e~ll~~~~~Ry~~ldlw~~~~~~l~~l~~~~~~~~ 532 (770)
|.++...|+++|+++||. |+++++||.++...|+| .|+|..|.++-...+.++.+|+
T Consensus 1599 Hv~~IskfAqLEFk~GDa------------------eRGRtlfEgll~ayPKR---tDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDA------------------ERGRTLFEGLLSAYPKR---TDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred hHHHHHHHHHHHhhcCCc------------------hhhHHHHHHHHhhCccc---hhHHHHHHHHHHccCCHHHHHH
Confidence 999999999999999998 89999999999999999 9999999986666655555553
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=1.2e-14 Score=176.19 Aligned_cols=214 Identities=14% Similarity=0.035 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 004187 267 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 346 (770)
Q Consensus 267 ~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~ 346 (770)
++..|.+++...|.+. ..+.++..+...|++++|+..|++++...|.+ ..|+.++.++.+.|++++|...|+++++..
T Consensus 495 Ai~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 495 ALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344444444444332 13333444444555555555555544443332 234455555555666666666666666655
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 004187 347 VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEY 426 (770)
Q Consensus 347 p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~y 426 (770)
|. ...++..++....+.|++++|...|+++++..|. ..+|..+|.++... |+.++|...|++++...|+++.++..+
T Consensus 573 P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l-G~~deA~~~l~~AL~l~Pd~~~a~~nL 649 (987)
T PRK09782 573 LG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQR-HNVPAAVSDLRAALELEPNNSNYQAAL 649 (987)
T ss_pred Cc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 54 3333333333333457777777777777776664 77777777776664 888888888888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 427 ADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 427 a~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+.++...|++++|..+|+++++..| ++..+|...+......|+.+.++..++++.+..|
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~P--~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGLP--DDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8888888888888888888888777 6667777777777778888888888888887777
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.1e-15 Score=160.54 Aligned_cols=416 Identities=15% Similarity=0.142 Sum_probs=282.0
Q ss_pred cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHhhccCcchHH
Q 004187 34 LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYIRFIRKVYEKKGTEGQE 112 (770)
Q Consensus 34 ~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~-~~lW~~y~~~~~~~~~~~~~~~~e 112 (770)
.++.+++|++.|..+|+..|+.+-++-..+-.+...|+++++.+-..++|++.|+ +.....-+.-.+..++.
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~------- 199 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF------- 199 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH-------
Confidence 3457999999999999999999889999999999999999999999999999995 56666656555555542
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHH-HHHcc-ccccHHHHHHHHHHHHHHhh
Q 004187 113 ETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQ-RAVVT-PTHHVEQLWKDYENFENSVS 190 (770)
Q Consensus 113 ~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyq-ral~~-P~~~~~~l~~~y~~fe~~~~ 190 (770)
..-+++-....+-.++.+.++-...=+.|+ .+.+..+..-|. +.... |....-. .-+..|...+.
T Consensus 200 -~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk----------k~a~~ka~e~~k~nr~p~lPS~~fi~--syf~sF~~~~~ 266 (606)
T KOG0547|consen 200 -DEALFDVTVLCILEGFQNASIEPMAERVLK----------KQAMKKAKEKLKENRPPVLPSATFIA--SYFGSFHADPK 266 (606)
T ss_pred -HHHHHhhhHHHHhhhcccchhHHHHHHHHH----------HHHHHHHHHhhcccCCCCCCcHHHHH--HHHhhcccccc
Confidence 222333322333223333333222222222 112223333333 11111 3221111 11222221110
Q ss_pred -----------HhHH---HHHHHHHhHHHHHHHHHHHHHH-HHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCC
Q 004187 191 -----------RQLA---KGLLSEYQSKYTSARAVYRERK-KYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNP 255 (770)
Q Consensus 191 -----------~~la---~~ll~e~~~~y~~A~~v~k~~~-~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~ 255 (770)
..+. +.+..-....|..|...+.+-. .++..+..+ .+.... +......+..-...|.++++
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n--~~d~~l--e~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN--EIDAEL--EYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc--ccchhH--HHHHHHHHHhhhhhhhcCCc
Confidence 0000 0111111224555444333211 111111100 010000 01111112222233455554
Q ss_pred CCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHH
Q 004187 256 QRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAA 335 (770)
Q Consensus 256 ~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A 335 (770)
. -+...|+.++..+|.+...|+..+..|...++.++..+.|..|...+|+++.+++..|.+..-++++++|
T Consensus 343 ~---------~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 343 L---------GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred h---------hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 3 2345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 336 KKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 336 ~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
..-|++++.+.|. +...+++++-.+.|++.++++...|+.+++.-|...++|.-+|+++..+ ++++.|.+.|++++..
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq-qqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ-QQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH-HhHHHHHHHHHHHHhh
Confidence 9999999999998 7889999999999999999999999999998777799999999998885 9999999999999999
Q ss_pred CCC------cHHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 416 FMH------EPAYILEYADFLS-RLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 416 ~p~------~~~~~l~ya~~l~-~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
.|. ++..+.+-+-+.. ..++++.|..++++|++..| .....+..+++||.+.|+.+.+..++......-
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp--kce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP--KCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 887 5544444333322 34899999999999999988 777788899999999999988887776665443
No 29
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.77 E-value=5.6e-17 Score=189.03 Aligned_cols=236 Identities=24% Similarity=0.311 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHH-HcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 004187 242 IAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLM-YLYHY----PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE 316 (770)
Q Consensus 242 ~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~-~~p~~----~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~ 316 (770)
.+|.+|+.|.-.- ...+.++.+.++||. .++.. -.+|+.|.+++..-|.-+...++|+||.+.| +..
T Consensus 1459 i~WI~YMaf~Lel-------sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~ 1530 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLEL-------SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAY 1530 (1710)
T ss_pred hHHHHHHHHHhhh-------hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chH
Confidence 3899999986532 234567789999996 34433 3599999999999998899999999999975 345
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 004187 317 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF--TYHVYVAYALM 394 (770)
Q Consensus 317 ~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~--~~~~yi~~a~l 394 (770)
.++..+..+|+..+++++|.++|+..++.... ...+|+.|+.|+.+++.-++|+.++++|++.-|. +.++.-.+|.|
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 56778899999999999999999999998875 6899999999999999999999999999998766 45567779999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHcCCHH
Q 004187 395 AFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVWKRFTQFEQMYGDLD 473 (770)
Q Consensus 395 e~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~-~~p~~~~~~lw~~~~~fE~~~Gd~~ 473 (770)
|+++ ||.++++.+||-.+..+|.-.++|.-|++.+.++++.+.+|.+|||++. .++..+...++..|++||..+||-.
T Consensus 1610 EFk~-GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKY-GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred Hhhc-CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 9997 9999999999999999999999999999999999999999999999998 4666788899999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 004187 474 STLKVEQRRKEALS 487 (770)
Q Consensus 474 ~~~k~~~R~~~~~~ 487 (770)
.++.+..|+.|...
T Consensus 1689 ~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1689 NVEYVKARAKEYVE 1702 (1710)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999886
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=4.5e-15 Score=179.88 Aligned_cols=379 Identities=12% Similarity=0.003 Sum_probs=233.9
Q ss_pred CCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----ChHHHH
Q 004187 18 ADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL----QVPLWR 93 (770)
Q Consensus 18 ~~P~d~~aw~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p----~~~lW~ 93 (770)
..|.+.-.-..+.......+..+++...+.+....|.+.+.-....-..++.|++++|+.+|+++..... +..|-.
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 338 TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 5566664433444444456788888889998888899999999999999999999999999999988643 234544
Q ss_pred HHHHHHHHHhhccCc-------------------chHHHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHHhhCCcCchHH
Q 004187 94 CYIRFIRKVYEKKGT-------------------EGQEETRKAFDFMLSHVGSDIS--SGPIWLEYITFLKSLPALNAQE 152 (770)
Q Consensus 94 ~y~~~~~~~~~~~~~-------------------~~~e~ar~~~e~aL~~ig~dp~--s~~lW~~yi~fl~~~~~~~~~~ 152 (770)
..+....+......+ .....+..+++.+.+.++.+|. ...+|..+..++..
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-------- 489 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-------- 489 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh--------
Confidence 555555544321000 0001112233333333333333 33344443333321
Q ss_pred HHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 004187 153 ESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPP 231 (770)
Q Consensus 153 ~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p 231 (770)
++..+|...|.+++.. |.. ..
T Consensus 490 --~~~~eAi~a~~~Al~~~Pd~-~~------------------------------------------------------- 511 (987)
T PRK09782 490 --TLPGVALYAWLQAEQRQPDA-WQ------------------------------------------------------- 511 (987)
T ss_pred --CCcHHHHHHHHHHHHhCCch-HH-------------------------------------------------------
Confidence 1223333333333332 221 00
Q ss_pred CCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004187 232 TGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA 311 (770)
Q Consensus 232 ~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~ 311 (770)
.+-..+..... +..+.++..|++++...|. ...|+.++..+...|+.++|...|+++++.
T Consensus 512 ----------~L~lA~al~~~---------Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 512 ----------HRAVAYQAYQV---------EDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred ----------HHHHHHHHHHC---------CCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 00000111111 2234455566665554333 445677777777777777777777777777
Q ss_pred CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004187 312 LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAY 391 (770)
Q Consensus 312 ~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~ 391 (770)
.|.+..++..++......|++++|...|+++++..|. ..+|+.++..+.+.|++++|+..|++++...|....++.++
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL 649 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL 649 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7777666555544444557777777777777777774 56777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCC
Q 004187 392 ALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGD 471 (770)
Q Consensus 392 a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd 471 (770)
+.++... |+.++|+.+|+++++..|+++.++..++..+..+|++++|...|++++...| +...|-..+..++....+
T Consensus 650 G~aL~~~-G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P--~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 650 GYALWDS-GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID--NQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCchhhhhhhHHHHHHHH
Confidence 7666654 7777777777777777777777777777777777777777777777777766 555666566655555556
Q ss_pred HHHHHHHHHHHHHhcc
Q 004187 472 LDSTLKVEQRRKEALS 487 (770)
Q Consensus 472 ~~~~~k~~~R~~~~~~ 487 (770)
...+.+.++|+...-+
T Consensus 727 ~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 727 FRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHhhcCc
Confidence 6666666666555544
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.5e-14 Score=162.17 Aligned_cols=400 Identities=14% Similarity=0.102 Sum_probs=202.8
Q ss_pred CChhhHHHHHHHHHHhCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHhhccCcchHHH
Q 004187 36 LPVAQAAPIYEQLLSVFPTA-AKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYIRFIRKVYEKKGTEGQEE 113 (770)
Q Consensus 36 ~~i~~Ar~~ye~~l~~fP~~-~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~-~~lW~~y~~~~~~~~~~~~~~~~e~ 113 (770)
+++++|-..|..++...|.+ .--..-+++++++.|+++.+...|++.++..|+ .+.-...+....... +..+..++
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~--~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA--KKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh--hhhHHHHH
Confidence 45666666666666666655 333445566666666666677777777766663 332222222221110 11234566
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc--------cc---ccHHHHHHHH
Q 004187 114 TRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT--------PT---HHVEQLWKDY 182 (770)
Q Consensus 114 ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~--------P~---~~~~~l~~~y 182 (770)
+..+..+++.. .|.....|+....+++. ++......+|.+|+.+ |. +++..+.
T Consensus 399 a~~~l~K~~~~---~~~d~~a~l~laql~e~----------~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh--- 462 (1018)
T KOG2002|consen 399 ASNVLGKVLEQ---TPVDSEAWLELAQLLEQ----------TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLH--- 462 (1018)
T ss_pred HHHHHHHHHhc---ccccHHHHHHHHHHHHh----------cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH---
Confidence 66777666664 34555678887777653 2233335555555522 21 1111111
Q ss_pred HHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHH-HHHcCCCCCCcc
Q 004187 183 ENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLT-FEKGNPQRIDTA 261 (770)
Q Consensus 183 ~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~-~ek~n~~~ld~~ 261 (770)
|. .+.+..|...++......... ..+... ....+.+-..+.. .|..
T Consensus 463 --f~---------------~g~~~~A~~~f~~A~~~~~~~------~n~de~--~~~~lt~~YNlarl~E~l-------- 509 (1018)
T KOG2002|consen 463 --FR---------------LGNIEKALEHFKSALGKLLEV------ANKDEG--KSTNLTLKYNLARLLEEL-------- 509 (1018)
T ss_pred --HH---------------hcChHHHHHHHHHHhhhhhhh------cCcccc--ccchhHHHHHHHHHHHhh--------
Confidence 11 223333433333211110000 000000 0000101111111 1111
Q ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 262 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
..+..+...|...+..+|.+-++++.++.+....++..+|...+..++..+..++.+|..+|.++....++-.|.+-|+.
T Consensus 510 ~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 12334455677777777777777777776666666667777777777777777777777667666666666556665555
Q ss_pred HhccCCCC-cHHHHHHHHHHHHHh------------cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 004187 342 LLTDSVNT-TALAHIQFIRFLRRT------------EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNV 408 (770)
Q Consensus 342 al~~~p~~-~~~~w~~~~~~~~r~------------~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~i 408 (770)
.++..... ++-+.+++++++++. +.+++|+++|+++++..|.+..+-...|.++..+ |++++|+.|
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k-g~~~~A~dI 668 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK-GRFSEARDI 668 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc-cCchHHHHH
Confidence 55432221 223334444444321 2345566666666665554322222244444443 666666666
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 409 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 409 fe~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
|....+...+.+++|++.+.++..+|++-.|.++|+++++.+-+.+...|...++......|.+..+...+.++....|
T Consensus 669 FsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 669 FSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 6666665555556666666666666666666666666666554445555555555555555555555555555554444
No 32
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.72 E-value=2.4e-14 Score=157.52 Aligned_cols=399 Identities=15% Similarity=0.234 Sum_probs=271.1
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHH-------------hcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcc
Q 004187 44 IYEQLLSVFPTAAKFWKQYVEAYM-------------AVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTE 109 (770)
Q Consensus 44 ~ye~~l~~fP~~~~~W~~yi~~e~-------------~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~ 109 (770)
-....+.++|.+.++|-.....-+ .....+.++.+|...|..+| ...+|..|+.++.+.++
T Consensus 20 ~~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~----- 94 (577)
T KOG1258|consen 20 TDNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGN----- 94 (577)
T ss_pred ccchhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhh-----
Confidence 345556667777666654433222 22345778899999999999 57899999999999886
Q ss_pred hHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc--ccccHHHHHHHHHHHHH
Q 004187 110 GQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT--PTHHVEQLWKDYENFEN 187 (770)
Q Consensus 110 ~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~--P~~~~~~l~~~y~~fe~ 187 (770)
.+++.++|++++..++ .|..+|..|..|+.+. .+.-+.+|..|++|+.. -...-..+|..|..||+
T Consensus 95 -~~~s~~Vfergv~aip---~SvdlW~~Y~~f~~n~--------~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en 162 (577)
T KOG1258|consen 95 -AENSVKVFERGVQAIP---LSVDLWLSYLAFLKNN--------NGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFEN 162 (577)
T ss_pred -HHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHh
Confidence 6899999999999864 7899999999999863 23345599999999987 33445789999999997
Q ss_pred HhhH-----hHHHHHHHH----HhHHHHHHHHHHHH---------------HHHHHHHhhhhccCCCCCCChhhHHHHHH
Q 004187 188 SVSR-----QLAKGLLSE----YQSKYTSARAVYRE---------------RKKYCEEIDWNMLAVPPTGSYKEEQQWIA 243 (770)
Q Consensus 188 ~~~~-----~la~~ll~e----~~~~y~~A~~v~k~---------------~~~~~~~L~~~~~~v~p~~~~~~~~~~~l 243 (770)
.... .+...+++- +..-|++-....+. +...... ..++-.+ .-++-
T Consensus 163 ~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~-----~~~~~~~-----~~~e~ 232 (577)
T KOG1258|consen 163 GQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER-----SKITHSQ-----EPLEE 232 (577)
T ss_pred ccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh-----hhccccc-----ChhHH
Confidence 5321 122222221 00111110000000 0000000 0000000 01112
Q ss_pred HHHHHHHHHcCCCCCC-cchhhhHH-----------------HHHHHHHHHH-----cCC---CHHHHHHHHHHHHHcCC
Q 004187 244 WKRLLTFEKGNPQRID-TASSNKRI-----------------IFTYEQCLMY-----LYH---YPDIWYDYATWNAKSGS 297 (770)
Q Consensus 244 w~~yi~~ek~n~~~ld-~~~~~~r~-----------------~~~ye~aL~~-----~p~---~~~~w~~~a~~l~~~g~ 297 (770)
|..++.........++ .....+++ +..||..+.. .|. .-..|..|+.+.+..|+
T Consensus 233 ~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~ 312 (577)
T KOG1258|consen 233 LEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGD 312 (577)
T ss_pred HHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhccc
Confidence 2222221110000000 00011111 1233333321 122 33689999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004187 298 IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDA 377 (770)
Q Consensus 298 ~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~A 377 (770)
.+.+.-.|+|++-.|-.-.++|+.|+.+.+..|+.+-|..++.++.+......+.+.+.++.|+...|++..|+.++++.
T Consensus 313 ~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 313 FSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998766657889999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHh--CCC-cHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCC
Q 004187 378 RKSPNFTYHVYVAYALMAFCQDKDPKLAHN---VFEAGLKR--FMH-EPAYILEYADFLSRL-NDDRNIRALFERALSSL 450 (770)
Q Consensus 378 l~~~~~~~~~yi~~a~le~~~~g~~~~A~~---ife~alk~--~p~-~~~~~l~ya~~l~~~-g~~~~Ar~lferaL~~~ 450 (770)
...-+....+-+..+.+++.. |+.+.+.. ++.....- ++. -..++..|+++.... ++.+.|+.++..++...
T Consensus 393 ~~e~pg~v~~~l~~~~~e~r~-~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 393 ESEYPGLVEVVLRKINWERRK-GNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred HhhCCchhhhHHHHHhHHHHh-cchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 987777778888888888886 88887774 22222221 111 245677888888775 67899999999999999
Q ss_pred CchhHHHHHHHHHHHHHHcCCH
Q 004187 451 PPEESIEVWKRFTQFEQMYGDL 472 (770)
Q Consensus 451 p~~~~~~lw~~~~~fE~~~Gd~ 472 (770)
| +...+|..++.|+...+..
T Consensus 472 ~--~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 472 P--DCKVLYLELIRFELIQPSG 491 (577)
T ss_pred C--ccHHHHHHHHHHHHhCCcc
Confidence 9 7789999999999877643
No 33
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.71 E-value=8.2e-13 Score=161.42 Aligned_cols=411 Identities=10% Similarity=0.031 Sum_probs=301.5
Q ss_pred CCCCCHHHHHHHHH-HhcCCChhhHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHH
Q 004187 18 ADKYNVETAEILAN-SALHLPVAQAAPIYEQLLSVF--PTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRC 94 (770)
Q Consensus 18 ~~P~d~~aw~~l~~-~~~~~~i~~Ar~~ye~~l~~f--P~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~~ 94 (770)
..+.+...+..+.. ....+.+++|+.+|+.+.... +.+.-++..++..+.+.|..++|..+|..+.. |+...|..
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~ 442 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNM 442 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHH
Confidence 34455555555544 556789999999999998765 33445566778889999999999999988765 88888888
Q ss_pred HHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcccccc
Q 004187 95 YIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHH 174 (770)
Q Consensus 95 y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~ 174 (770)
.+..+-+.++ .+.+.++|+.+.+. |..| +...|...+..+. ..++++.|+.+|+++.......
T Consensus 443 LL~a~~k~g~------~e~A~~lf~~M~~~-Gl~p-D~~tynsLI~~y~---------k~G~vd~A~~vf~eM~~~Gv~P 505 (1060)
T PLN03218 443 LMSVCASSQD------IDGALRVLRLVQEA-GLKA-DCKLYTTLISTCA---------KSGKVDAMFEVFHEMVNAGVEA 505 (1060)
T ss_pred HHHHHHhCcC------HHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH---------hCcCHHHHHHHHHHHHHcCCCC
Confidence 8888766554 68899999987664 4443 4567888887754 4678999999999998651110
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcC
Q 004187 175 VEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGN 254 (770)
Q Consensus 175 ~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n 254 (770)
....|......- -..+++++|..+|.+... ..+.|.. ..|..++..-...
T Consensus 506 dvvTynaLI~gy-------------~k~G~~eeAl~lf~~M~~---------~Gv~PD~--------vTYnsLI~a~~k~ 555 (1060)
T PLN03218 506 NVHTFGALIDGC-------------ARAGQVAKAFGAYGIMRS---------KNVKPDR--------VVFNALISACGQS 555 (1060)
T ss_pred CHHHHHHHHHHH-------------HHCcCHHHHHHHHHHHHH---------cCCCCCH--------HHHHHHHHHHHHC
Confidence 012232221110 014567778777765211 1233331 3566666533221
Q ss_pred CCCCCcchhhhHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhC
Q 004187 255 PQRIDTASSNKRIIFTYEQCLMY-L--YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL-PDSEMLRYAFAELEESRG 330 (770)
Q Consensus 255 ~~~ld~~~~~~r~~~~ye~aL~~-~--p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~-P~s~~lw~~~a~~~~~~g 330 (770)
+..+++..+|+++... . ..+...|..+...+.+.|++++|.++|++..+.. +.+...|..++..+.+.|
T Consensus 556 -------G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 556 -------GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 2346677888888763 2 2345688889999999999999999999999864 567888999999999999
Q ss_pred cHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 004187 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-NFTYHVYVAYALMAFCQDKDPKLAHNVF 409 (770)
Q Consensus 331 ~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~-~~~~~~yi~~a~le~~~~g~~~~A~~if 409 (770)
++++|.++|+++.+..-..+...|..++..+.+.|++++|.++|+++.+.. ..+..+|..+...+.++ |++++|.++|
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~-G~~eeA~~lf 707 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA-KNWKKALELY 707 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHH
Confidence 999999999999876433246788899999999999999999999999764 23466777777776665 9999999999
Q ss_pred HHHHHh-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 410 EAGLKR-FMHEPAYILEYADFLSRLNDDRNIRALFERALSS-LPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 410 e~alk~-~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~-~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+.+.+. ...+...|...+..+.+.|+.++|..+|+++... +. -+...|..++....+.|+.+.+.+++.++.+.--
T Consensus 708 ~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~--Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC--PNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 998765 2335678999999999999999999999998763 22 2245666667777789999999999999987543
No 34
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.4e-13 Score=147.53 Aligned_cols=394 Identities=15% Similarity=0.184 Sum_probs=247.8
Q ss_pred CCCCCHHHHHHHHHHhcCCC-hhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcC-ChHHHHH
Q 004187 18 ADKYNVETAEILANSALHLP-VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVN-NDDATKQLFSRCLLICL-QVPLWRC 94 (770)
Q Consensus 18 ~~P~d~~aw~~l~~~~~~~~-i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~-~~~~a~~ifeRaL~~~p-~~~lW~~ 94 (770)
+-+.|+..|..++..++... ..+..++|.++|..+|+++.+|+.-+.++...+ |++.|+.+|.|+|+.+| ++.||..
T Consensus 100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 66789999999999887764 899999999999999999999999999888765 59999999999999999 7899999
Q ss_pred HHHHHHHHhhc-----------cCcc--hHH--------------------------------HHHHHHHHHHHhc-CCC
Q 004187 95 YIRFIRKVYEK-----------KGTE--GQE--------------------------------ETRKAFDFMLSHV-GSD 128 (770)
Q Consensus 95 y~~~~~~~~~~-----------~~~~--~~e--------------------------------~ar~~~e~aL~~i-g~d 128 (770)
|.+++...-.. .+.. .++ .+.++=...++.+ +.+
T Consensus 180 yfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~ 259 (568)
T KOG2396|consen 180 YFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKA 259 (568)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99998764210 0000 000 0011111111122 335
Q ss_pred CCChhhHHHHHHHHhhCCcCc----------hHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhHhHHHHH
Q 004187 129 ISSGPIWLEYITFLKSLPALN----------AQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQLAKGL 197 (770)
Q Consensus 129 p~s~~lW~~yi~fl~~~~~~~----------~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~~la~~l 197 (770)
|.+..+|.+..+-+.+..-.+ .++-.-+-+....+|+.+++. |. +.+|+-|..|-......+.-..
T Consensus 260 ~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t---~sm~e~YI~~~lE~~~~~r~~~ 336 (568)
T KOG2396|consen 260 PDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPT---ESMWECYITFCLERFTFLRGKR 336 (568)
T ss_pred CCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHhhhhhH
Confidence 666678877654433221110 011112234556788888876 44 4678888887654322211111
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHH-HHHHHHHHcCCCCCCcchhhhHHHHHHHHHHH
Q 004187 198 LSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAW-KRLLTFEKGNPQRIDTASSNKRIIFTYEQCLM 276 (770)
Q Consensus 198 l~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw-~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~ 276 (770)
|. +-..+++. +.. + ..+.+.+ ...+ ..++...+.|- +-..+-.-+..
T Consensus 337 I~-------h~~~~~~~---~~~-~----~~l~~~~-------~~~ys~~~l~~~t~~~----------~r~~a~~l~~e 384 (568)
T KOG2396|consen 337 IL-------HTMCVFRK---AHE-L----KLLSECL-------YKQYSVLLLCLNTLNE----------AREVAVKLTTE 384 (568)
T ss_pred HH-------HHHHHHHH---HHH-h----cccccch-------HHHHHHHHHHHhccch----------HhHHHHHhhHH
Confidence 11 11111111 000 0 0011111 0111 11222222221 10111122224
Q ss_pred HcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCc-H--HHHHHHHHHHhccCCCCc
Q 004187 277 YLYHYPDIWYDYATWNAKS-GSIDAAIKVFQRALKALPDS--EMLRYAFAELEESRGA-I--AAAKKLYESLLTDSVNTT 350 (770)
Q Consensus 277 ~~p~~~~~w~~~a~~l~~~-g~~e~A~~v~erAi~~~P~s--~~lw~~~a~~~~~~g~-~--e~A~~iye~al~~~p~~~ 350 (770)
.+.++..+|..+.+.+... .+++--...+-..++..+.+ ..+|.... .++ . ..-..++..+++......
T Consensus 385 ~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~ 459 (568)
T KOG2396|consen 385 LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADS 459 (568)
T ss_pred HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCce
Confidence 5678999999999988843 33332222222344444443 33443322 222 1 222234455555444334
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 351 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ-DKDPKLAHNVFEAGLKRFMHEPAYILEYADF 429 (770)
Q Consensus 351 ~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~-~g~~~~A~~ife~alk~~p~~~~~~l~ya~~ 429 (770)
..+-..|.+++.+.++.++||++|++....++.....|-.+.++|... +-+...++++|+.++..|+.++++|..|..+
T Consensus 460 ~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 460 VTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKE 539 (568)
T ss_pred eehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHh
Confidence 566778899999999999999999999999999899999998887531 2358899999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCC
Q 004187 430 LSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 430 l~~~g~~~~Ar~lferaL~~~p 451 (770)
+..+|..+++-.+|.||++.+.
T Consensus 540 e~~~g~~en~~~~~~ra~ktl~ 561 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMKTLQ 561 (568)
T ss_pred hccCCCcccccHHHHHHHHhhC
Confidence 9999999999999999998765
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.70 E-value=7.3e-14 Score=155.56 Aligned_cols=163 Identities=15% Similarity=0.159 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 363 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r 363 (770)
.|..++..+...|++++|...|+++++..|++...++.++.++...|++++|.++|++++...|.....++..++..+..
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 35567777888888899999999998888888888888888888888888888888888877665234456666666666
Q ss_pred hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh--cCChhHHHH
Q 004187 364 TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR--LNDDRNIRA 441 (770)
Q Consensus 364 ~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~--~g~~~~Ar~ 441 (770)
.|++++|...|+++++..+.. .++..++.+.... |++++|.++|+++++.+|++..+...+..++.. .|+..++..
T Consensus 262 ~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~-g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~ 339 (389)
T PRK11788 262 LGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQ-EGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLL 339 (389)
T ss_pred cCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHH
Confidence 677777777777766654432 3345555554443 677777777777777666665444333322221 335555555
Q ss_pred HHHHHHh
Q 004187 442 LFERALS 448 (770)
Q Consensus 442 lferaL~ 448 (770)
++++.++
T Consensus 340 ~~~~~~~ 346 (389)
T PRK11788 340 LLRDLVG 346 (389)
T ss_pred HHHHHHH
Confidence 5555553
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=8.2e-14 Score=148.53 Aligned_cols=219 Identities=16% Similarity=0.077 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
..+...-+.|+.-.|+.-.|...|..+|+..|....+++.++..|....+-++..+.|.++...+|. ++++|++.+++.
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHH
Confidence 3456666777778899999999999999999999999999999999999999999999999999998 889999999999
Q ss_pred HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHH
Q 004187 362 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRA 441 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~ 441 (770)
.-.++++.|..-|++++...|.+.-.|+..+.++|+. +.++++.+.|+.+.++||+.++++..|+.++..+++++.|..
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 9999999999999999999998888999999999996 899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchh------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccchhhhhHHhhhhh
Q 004187 442 LFERALSSLPPEE------SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSR 507 (770)
Q Consensus 442 lferaL~~~p~~~------~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~~e~~~~~~e~ll~~~~~R 507 (770)
.|+.|+..-|..+ ..-|....+.+. -.+|+..+.++++++.+..|+ -.-+.+.+.+..+-|
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk----ce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK----CEQAYETLAQFELQR 550 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch----HHHHHHHHHHHHHHH
Confidence 9999999766311 122333333333 348999999999999999983 222344444444444
No 37
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=5.8e-15 Score=144.56 Aligned_cols=202 Identities=17% Similarity=0.131 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~ 362 (770)
++.+.+|.-|.+.|+...|.+-+++|++..|++...|..+|.+|...|+.+.|.+.|+++++..|+ +.+|..+|+-|+.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 578889999999999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred HhcCHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHH
Q 004187 363 RTEGVEAARKYFLDARKSPNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIR 440 (770)
Q Consensus 363 r~~~~e~A~~~f~~Al~~~~~--~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar 440 (770)
.+|.+++|...|++|+.++.. ....|.+.+.+-.+. |+.+.|+..|+++++..|+.+...+..++.+.+.|++-.||
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA-GQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-CCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999999998754 467788888887775 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 004187 441 ALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 488 (770)
Q Consensus 441 ~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~ 488 (770)
..+++.....+ -....||.. ++++...||.+.+.+...+....||.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLG-IRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHH-HHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999998776 344556654 68899999999999999999999994
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.68 E-value=1.9e-13 Score=152.22 Aligned_cols=217 Identities=15% Similarity=0.058 Sum_probs=171.5
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHhCcHHHHHHHH
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE-----MLRYAFAELEESRGAIAAAKKLY 339 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~-----~lw~~~a~~~~~~g~~e~A~~iy 339 (770)
+.+...|++++...|.+..++..++.++...|++++|++.|+++++..|.+. .++..++.++...|++++|..+|
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3455677777777788888999999999999999999999999999887652 35667888889999999999999
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 340 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT-YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 340 e~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~-~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
+++++..|. ...+++.++..+.+.|++++|.++|+++++..+.. ..++..++.++... |+.++|...++++++..|+
T Consensus 204 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 204 KKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL-GDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC
Confidence 999999887 67899999999999999999999999999865543 34566667766664 9999999999999999998
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004187 419 EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484 (770)
Q Consensus 419 ~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~ 484 (770)
...+ ...+..+...|++++|..+|+++++..|.......+......+...|....+..+++++.+
T Consensus 282 ~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 282 ADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred chHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 7544 8899999999999999999999999988322222222222222224566565555555544
No 39
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.67 E-value=1.2e-13 Score=165.57 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHh-cCCChhhHHHHHHHHHHh-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004187 21 YNVETAEILANSA-LHLPVAQAAPIYEQLLSV-FPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRF 98 (770)
Q Consensus 21 ~d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~-fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~~y~~~ 98 (770)
-|...+..++..+ ..+.++.++.++..+... +.-+...|..++..+.+.|+++.|.++|+++.. |++-.|...+.-
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~ 198 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGG 198 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHH
Confidence 3667777777744 556788888888888764 333577888999999999999999999988743 677788888877
Q ss_pred HHHHhhccCcchHHHHHHHHHHHHHhcCCCC
Q 004187 99 IRKVYEKKGTEGQEETRKAFDFMLSHVGSDI 129 (770)
Q Consensus 99 ~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp 129 (770)
.-+.++ .+++.++|+.+++. |..|
T Consensus 199 ~~~~g~------~~~A~~lf~~M~~~-g~~p 222 (697)
T PLN03081 199 LVDAGN------YREAFALFREMWED-GSDA 222 (697)
T ss_pred HHHCcC------HHHHHHHHHHHHHh-CCCC
Confidence 766554 67888888887754 4444
No 40
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.67 E-value=5.3e-13 Score=160.03 Aligned_cols=408 Identities=11% Similarity=0.070 Sum_probs=299.4
Q ss_pred CHHHHHHHHHH-hcCCChhhHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CChHHHHHHH
Q 004187 22 NVETAEILANS-ALHLPVAQAAPIYEQLLSVF--PTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC--LQVPLWRCYI 96 (770)
Q Consensus 22 d~~aw~~l~~~-~~~~~i~~Ar~~ye~~l~~f--P~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~--p~~~lW~~y~ 96 (770)
+...|...+.. ...+.+++|..+|+.+.... +-+...|..++..+.+.++++.+.+++..+...- |++.++...+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 55678888774 45678999999999998754 3467789999999999999999999999998763 6888888888
Q ss_pred HHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc---ccc
Q 004187 97 RFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT---PTH 173 (770)
Q Consensus 97 ~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~---P~~ 173 (770)
...-+.+. .+.++++|+... . .+...|...+..+. +.++.++|..+|++.+.. |..
T Consensus 166 ~~y~k~g~------~~~A~~lf~~m~-----~-~~~~t~n~li~~~~---------~~g~~~~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 166 LMHVKCGM------LIDARRLFDEMP-----E-RNLASWGTIIGGLV---------DAGNYREAFALFREMWEDGSDAEP 224 (697)
T ss_pred HHHhcCCC------HHHHHHHHhcCC-----C-CCeeeHHHHHHHHH---------HCcCHHHHHHHHHHHHHhCCCCCh
Confidence 88776654 688999998542 1 24468988887754 357899999999999865 321
Q ss_pred -cHHHHHHHHHHHHH-----Hh-----------hHhHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 004187 174 -HVEQLWKDYENFEN-----SV-----------SRQLAKGLLSEY--QSKYTSARAVYRERKKYCEEIDWNMLAVPPTGS 234 (770)
Q Consensus 174 -~~~~l~~~y~~fe~-----~~-----------~~~la~~ll~e~--~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~ 234 (770)
.+..+...+..... .+ +..+...++.-+ .++++.|.+++++ +++.+
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~--------------m~~~~- 289 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG--------------MPEKT- 289 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh--------------CCCCC-
Confidence 11111111111000 00 000011112211 3456666666653 11211
Q ss_pred hhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 004187 235 YKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYL-YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL- 312 (770)
Q Consensus 235 ~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~-p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~- 312 (770)
...|..++.....+ +..+.+..+|+++.... .-+...+..+...+.+.|++++|.++++.+++..
T Consensus 290 ------~vt~n~li~~y~~~-------g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 290 ------TVAWNSMLAGYALH-------GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred ------hhHHHHHHHHHHhC-------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 13677777643332 34566788999887643 3456788899999999999999999999999974
Q ss_pred CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 004187 313 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN-FTYHVYVAY 391 (770)
Q Consensus 313 P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~-~~~~~yi~~ 391 (770)
+.+..++..+...|.+.|++++|.++|+++.+. +...|..++..+.+.|+.++|.++|+++.+.+. .+...|..+
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 677788899999999999999999999988653 346899999999999999999999999987532 235556655
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHc
Q 004187 392 ALMAFCQDKDPKLAHNVFEAGLKRFMHE--PAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMY 469 (770)
Q Consensus 392 a~le~~~~g~~~~A~~ife~alk~~p~~--~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~ 469 (770)
.....+ .|..++|.++|+.+.+.++-. ...|..+++.+.+.|+.++|.++|+++ |..-...+|..++......
T Consensus 433 l~a~~~-~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 433 LSACRY-SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIH 507 (697)
T ss_pred HHHHhc-CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHc
Confidence 444344 599999999999999865443 357888999999999999999999874 2123456799999999999
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 004187 470 GDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 470 Gd~~~~~k~~~R~~~~~~ 487 (770)
|+.+.+..+.+++.+..|
T Consensus 508 g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 508 KNLELGRLAAEKLYGMGP 525 (697)
T ss_pred CCcHHHHHHHHHHhCCCC
Confidence 999999999888887766
No 41
>PLN03077 Protein ECB2; Provisional
Probab=99.67 E-value=5.2e-13 Score=163.88 Aligned_cols=407 Identities=11% Similarity=0.062 Sum_probs=282.0
Q ss_pred CCHHHHHHHHH-HhcCCChhhHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CChHHHHHH
Q 004187 21 YNVETAEILAN-SALHLPVAQAAPIYEQLLSV--FPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC--LQVPLWRCY 95 (770)
Q Consensus 21 ~d~~aw~~l~~-~~~~~~i~~Ar~~ye~~l~~--fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~--p~~~lW~~y 95 (770)
.|...|..++. ..+.+..++|..+|+++... .|+ ...+...+..+.+.|+.+.+.+++..+...- |++.+|...
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD-LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 35677888777 44667888888888888764 343 3456777777777788888888887777663 577788888
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc---cc
Q 004187 96 IRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT---PT 172 (770)
Q Consensus 96 ~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~---P~ 172 (770)
+...-+.+. .+.++++|+... ..+...|...+..+. +.+++++|..+|++.... |.
T Consensus 330 i~~y~k~g~------~~~A~~vf~~m~------~~d~~s~n~li~~~~---------~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 330 IQMYLSLGS------WGEAEKVFSRME------TKDAVSWTAMISGYE---------KNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHhcCC------HHHHHHHHhhCC------CCCeeeHHHHHHHHH---------hCCCHHHHHHHHHHHHHhCCCCC
Confidence 887777654 578888887532 123457887777643 356778888888877643 43
Q ss_pred c-cHHHHHHHHHHHH---HH-------h------hHhHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 004187 173 H-HVEQLWKDYENFE---NS-------V------SRQLAKGLLSE--YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTG 233 (770)
Q Consensus 173 ~-~~~~l~~~y~~fe---~~-------~------~~~la~~ll~e--~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~ 233 (770)
. .+..+...+.... .. . +..+...++.- ..++++.|.+++++ +...+
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~--------------m~~~d 454 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN--------------IPEKD 454 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh--------------CCCCC
Confidence 2 2222222221110 00 0 00011111111 13455566666553 11111
Q ss_pred ChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 004187 234 SYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL- 312 (770)
Q Consensus 234 ~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~- 312 (770)
...|..++.-...+ +..+.++.+|++++....-+...+..+...+.+.|+.+.+.+++..+++..
T Consensus 455 -------~vs~~~mi~~~~~~-------g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 455 -------VISWTSIIAGLRLN-------NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred -------eeeHHHHHHHHHHC-------CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 12576666533222 234567788898887656666778888888889999999999999998864
Q ss_pred CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 004187 313 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN-FTYHVYVAY 391 (770)
Q Consensus 313 P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~-~~~~~yi~~ 391 (770)
..+..+...+.+.|.+.|++++|..+|+.. .+ +...|..++..+.+.|+.++|.++|+++.+.+. .+...|..+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~--d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EK--DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc---CC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 445566778889999999999999999986 33 467899999999999999999999999987531 123344444
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHc
Q 004187 392 ALMAFCQDKDPKLAHNVFEAGLKRFMH--EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMY 469 (770)
Q Consensus 392 a~le~~~~g~~~~A~~ife~alk~~p~--~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~ 469 (770)
.....+ .|.+++|.++|+.+.+.++- +...|...++.+.+.|+.++|..++++.- .. -+..+|..++.....+
T Consensus 596 l~a~~~-~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~---pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 596 LCACSR-SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-IT---PDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHhh-cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC---CCHHHHHHHHHHHHHc
Confidence 333233 59999999999999976544 34678899999999999999999999852 22 3368899999988889
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 004187 470 GDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 470 Gd~~~~~k~~~R~~~~~~ 487 (770)
|+.+.++.+.++..+..|
T Consensus 671 ~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 671 RHVELGELAAQHIFELDP 688 (857)
T ss_pred CChHHHHHHHHHHHhhCC
Confidence 999999999999999888
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-12 Score=139.00 Aligned_cols=218 Identities=13% Similarity=0.042 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 004187 266 RIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 266 r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~ 345 (770)
++..+-+.....+..-++.-.-.|.++.-.++.++|...|+||++.+|....+|..+|.=+...++...|...|.+|+..
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 34455566667777777777777888877788888888888888888888888888888888888888888888888888
Q ss_pred CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 004187 346 SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILE 425 (770)
Q Consensus 346 ~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ 425 (770)
+|. +-.+|+.+++.+.-.+=..=|.-.|++|++..|.+..+|+.++.+..+. ++.++|+++|.+++...-.+...+..
T Consensus 394 ~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl-~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 394 NPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL-NRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred Cch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh-ccHHHHHHHHHHHHhccccchHHHHH
Confidence 887 6788888888888887788888888888888887888888888886554 88888888888888877667778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-----CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004187 426 YADFLSRLNDDRNIRALFERALSSL-----PPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEA 485 (770)
Q Consensus 426 ya~~l~~~g~~~~Ar~lferaL~~~-----p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~ 485 (770)
.++.+.++++.++|.+.|++.+... -.++....-..++.++.+.+|.+.+.....+....
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 8888888888888888888888732 11122333333777777888887666654444443
No 43
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=2.6e-12 Score=153.10 Aligned_cols=438 Identities=12% Similarity=0.003 Sum_probs=281.8
Q ss_pred CCCCCHH-HHHHHHHHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHH
Q 004187 18 ADKYNVE-TAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCY 95 (770)
Q Consensus 18 ~~P~d~~-aw~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y 95 (770)
..|..++ .....+..++.++++.|+..|+++++.+|.+......++.+....|+.++|...++||+...| +...-...
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 3454444 344556678889999999999999999999854434999999999999999999999992222 23333333
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-cccc
Q 004187 96 IRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHH 174 (770)
Q Consensus 96 ~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~ 174 (770)
+......++ .+++.++|+++++. +|.+..++...+.. +.+.++.++|...+++++.. |...
T Consensus 109 A~ly~~~gd------yd~Aiely~kaL~~---dP~n~~~l~gLa~~---------y~~~~q~~eAl~~l~~l~~~dp~~~ 170 (822)
T PRK14574 109 ARAYRNEKR------WDQALALWQSSLKK---DPTNPDLISGMIMT---------QADAGRGGVVLKQATELAERDPTVQ 170 (822)
T ss_pred HHHHHHcCC------HHHHHHHHHHHHhh---CCCCHHHHHHHHHH---------HhhcCCHHHHHHHHHHhcccCcchH
Confidence 555555444 67999999988876 77777777654333 23457788999999999987 6532
Q ss_pred HHHHHHHHHHHH-HHh-h-HhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcc--------CCCCCCChhhHHHHHH
Q 004187 175 VEQLWKDYENFE-NSV-S-RQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNML--------AVPPTGSYKEEQQWIA 243 (770)
Q Consensus 175 ~~~l~~~y~~fe-~~~-~-~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~--------~v~p~~~~~~~~~~~l 243 (770)
.. +...|..-. ... . -...++++... +... .++. .+...+.++-. ...|.-- .... ..
T Consensus 171 ~~-l~layL~~~~~~~~~AL~~~ekll~~~-P~n~---e~~~---~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~--~~ 239 (822)
T PRK14574 171 NY-MTLSYLNRATDRNYDALQASSEAVRLA-PTSE---EVLK---NHLEILQRNRIVEPALRLAKENPNLV-SAEH--YR 239 (822)
T ss_pred HH-HHHHHHHHhcchHHHHHHHHHHHHHhC-CCCH---HHHH---HHHHHHHHcCCcHHHHHHHHhCcccc-CHHH--HH
Confidence 21 222222100 000 0 00011111110 0000 0000 01111111100 0011100 0011 12
Q ss_pred HHHHHHHHH---cC--CCC--CCcchhhhHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004187 244 WKRLLTFEK---GN--PQR--IDTASSNKRIIFTYEQCLMYLYHYP-------DIWYDYATWNAKSGSIDAAIKVFQRAL 309 (770)
Q Consensus 244 w~~yi~~ek---~n--~~~--ld~~~~~~r~~~~ye~aL~~~p~~~-------~~w~~~a~~l~~~g~~e~A~~v~erAi 309 (770)
|..+-...+ .- +.+ .+.-...++++..+++.+...+..| .+.++..-.+...++..++++.|+...
T Consensus 240 ~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~ 319 (822)
T PRK14574 240 QLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME 319 (822)
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 222221111 00 001 1112245677778888887444333 455677888888999999999999887
Q ss_pred HhC-CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC-
Q 004187 310 KAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEGVEAARKYFLDARKSPN- 382 (770)
Q Consensus 310 ~~~-P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~-----~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~- 382 (770)
... |--..+....|+.|...++.++|..+|++++...+.. .......+...+...+++++|+.++++..+..+
T Consensus 320 ~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 320 AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 643 3344455667899999999999999999998865321 122234444555678999999999999987433
Q ss_pred -------------CCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 383 -------------FTY-HVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 383 -------------~~~-~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
.++ ..+...+..... .|+..+|.+.+++.+...|.++.+++.+++++...|.+.+|...+++++.
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~-~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVA-LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 122 233334554444 49999999999999999999999999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 449 SLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 449 ~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..| +...+....+......|+...+.++.+...+.+|
T Consensus 479 l~P--~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 479 LAP--RSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred hCC--ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 887 4444444445555567999999999999999999
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=6e-16 Score=164.61 Aligned_cols=168 Identities=21% Similarity=0.182 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKAL--PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~--P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
++..|..++.++...++++++..+++++.... +.+..+|+.+|.++.+.|+.++|..+|+++++..|+ +..++..++
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~ 187 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALA 187 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHH
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 45556666667777777777777777766543 567777777777777777777777777777777776 567777777
Q ss_pred HHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhH
Q 004187 359 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 438 (770)
Q Consensus 359 ~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~ 438 (770)
.++...|+.++++.+++...+..+.+..+|..+|.+.... |+.++|..+|+++++..|+++.++..|++.+...|+.++
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 7777777777777777666655433445666677776665 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 004187 439 IRALFERALSSL 450 (770)
Q Consensus 439 Ar~lferaL~~~ 450 (770)
|..++.+++..+
T Consensus 267 A~~~~~~~~~~l 278 (280)
T PF13429_consen 267 ALRLRRQALRLL 278 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 999999988653
No 45
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.65 E-value=8.2e-12 Score=152.74 Aligned_cols=369 Identities=12% Similarity=0.066 Sum_probs=271.9
Q ss_pred CHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CChHHHHHHHHH
Q 004187 22 NVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC--LQVPLWRCYIRF 98 (770)
Q Consensus 22 d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~--p~~~lW~~y~~~ 98 (770)
+.-.+..++..+ ..+.+++|..+|+.+.. | +...|..++..+.+.|+++.|..+|+++...- |+...|...+..
T Consensus 405 ~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~ 481 (1060)
T PLN03218 405 DKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481 (1060)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344444455533 45678889988887764 5 46689999999999999999999999998874 688889888888
Q ss_pred HHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc---ccccH
Q 004187 99 IRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT---PTHHV 175 (770)
Q Consensus 99 ~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~---P~~~~ 175 (770)
+-+.+. .+.+.++|+.+.+. |..| +...|...|..+. ..+++++|..+|++.... |..
T Consensus 482 y~k~G~------vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~---------k~G~~eeAl~lf~~M~~~Gv~PD~-- 542 (1060)
T PLN03218 482 CAKSGK------VDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCA---------RAGQVAKAFGAYGIMRSKNVKPDR-- 542 (1060)
T ss_pred HHhCcC------HHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH---------HCcCHHHHHHHHHHHHHcCCCCCH--
Confidence 877665 68999999988764 4444 4568888887754 467899999999998865 431
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCC
Q 004187 176 EQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNP 255 (770)
Q Consensus 176 ~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~ 255 (770)
..|....... . ..++++.|..++.+...- ...+.|.. ..|..++...-..
T Consensus 543 -vTYnsLI~a~-----------~--k~G~~deA~~lf~eM~~~-------~~gi~PD~--------vTynaLI~ay~k~- 592 (1060)
T PLN03218 543 -VVFNALISAC-----------G--QSGAVDRAFDVLAEMKAE-------THPIDPDH--------ITVGALMKACANA- 592 (1060)
T ss_pred -HHHHHHHHHH-----------H--HCCCHHHHHHHHHHHHHh-------cCCCCCcH--------HHHHHHHHHHHHC-
Confidence 2222111110 0 135667777777652111 01122321 2555555432211
Q ss_pred CCCCcchhhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhCcHH
Q 004187 256 QRIDTASSNKRIIFTYEQCLMYL-YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIA 333 (770)
Q Consensus 256 ~~ld~~~~~~r~~~~ye~aL~~~-p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~-~P~s~~lw~~~a~~~~~~g~~e 333 (770)
+..+++..+|+++.... +.+...|..++..+.+.|++++|.++|++.... ...+...|..+...+.+.|+++
T Consensus 593 ------G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 593 ------GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred ------CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 24567788999988765 567789999999999999999999999999886 2334667888889999999999
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004187 334 AAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-NFTYHVYVAYALMAFCQDKDPKLAHNVFEAG 412 (770)
Q Consensus 334 ~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~-~~~~~~yi~~a~le~~~~g~~~~A~~ife~a 412 (770)
+|.++|+.+.+.....+..+|..++..+.+.|++++|.++|+++.+.. ..+...|..+.....+ .|+.++|.++|+.+
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k-~G~~eeAlelf~eM 745 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE-GNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 999999999987554457899999999999999999999999987542 2246667777666555 49999999999998
Q ss_pred HHh-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 413 LKR-FMHEPAYILEYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 413 lk~-~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
.+. ...+...|...+..+.+.|+.+.|..+|+++++.
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 875 2334566777888899999999999999999885
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=3.9e-14 Score=156.82 Aligned_cols=214 Identities=15% Similarity=0.082 Sum_probs=195.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
+-+..+..+|+.|+.|..++.++--+++.+.|++.|+||+..+|.....+..++.=+..+.++|.|...|.++|..+|.
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 5566778899999999999999999999999999999999999999988888888788889999999999999999998
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 429 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~ 429 (770)
.-.+|+.++..+.+++.++.|.-.|++|++.+|.+..+...++.++.++ |+.|+|..+|++|+...|.++--.+..+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~-k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL-KRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh-hhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 7899999999999999999999999999999998888888888888886 999999999999999999999888899999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 430 LSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 430 l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+..++++++|.+.+|..-+..| +...++.-......++|..+.+.+-+--+....|
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP--~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVP--QESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 9999999999999999999888 5567777788888888988877777777776666
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=1.7e-13 Score=139.37 Aligned_cols=202 Identities=19% Similarity=0.181 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 360 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~ 360 (770)
...+++.++..+...|++++|.+.|++++...|++...|..++.++...|++++|.+.|+++++..|. ...++..++.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999887 67899999999
Q ss_pred HHHhcCHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhH
Q 004187 361 LRRTEGVEAARKYFLDARKSP--NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 438 (770)
Q Consensus 361 ~~r~~~~e~A~~~f~~Al~~~--~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~ 438 (770)
+...|++++|+..|++++... +.....+..++.+.... |++++|...|+++++..|+++..+..++.++...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA-GDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999754 23456788888887775 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 439 IRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 439 Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
|..++++++...+ .....|...+.+....|+.+.+....+.+.+.+
T Consensus 188 A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 188 ARAYLERYQQTYN--QTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 9999999998855 445555567777778899988888777666544
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.9e-11 Score=130.10 Aligned_cols=184 Identities=15% Similarity=0.103 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
.++++..|++||+.+|.+..+|...+.=+.+..+...|++.|.+|++.+|.+-..|+.+|..|+..+...=|.-.|++++
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------
Q 004187 344 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF------- 416 (770)
Q Consensus 344 ~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~------- 416 (770)
+..|+ +..+|..+++.+.+.++.++|++.|++|+..+.....+++.+|.+.-.. ++.++|...|++.++..
T Consensus 426 ~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l-~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 426 ELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL-KDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred hcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhhcccc
Confidence 99999 7899999999999999999999999999999888889999999986665 99999999999999842
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 417 MHEPAYILEYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 417 p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
++......-.+.++.+.+++++|-..-.+++.-
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 333345556889999999999998888888765
No 49
>PLN03077 Protein ECB2; Provisional
Probab=99.61 E-value=2.9e-12 Score=157.28 Aligned_cols=212 Identities=12% Similarity=0.007 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 266 RIIFTYEQCLMYL-YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 266 r~~~~ye~aL~~~-p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
.+..++..++... ..+..+...+...|.+.|++++|.++|++. +.+...|..++..+.+.|+.++|.++|++..+
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445666666543 334456677888999999999999999886 66788899999999999999999999999887
Q ss_pred cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHH
Q 004187 345 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP--NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 422 (770)
Q Consensus 345 ~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~--~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~ 422 (770)
.....+...+..++..+.+.|.+++|..+|+++.+.. ..+...|..+..++.+. |++++|.++++.+- ..| ++.+
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~-G~~~eA~~~~~~m~-~~p-d~~~ 659 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA-GKLTEAYNFINKMP-ITP-DPAV 659 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-CCHHHHHHHHHHCC-CCC-CHHH
Confidence 5433235567777788888999999999999998432 22356777777776664 99999999998862 333 4788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 423 ILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 423 ~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
|..++..+...++.+.+..+.+++++..| ++...+.-+.......|+.+.+.++.+.+.+.-
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p--~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDP--NSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 99998888888999999999999999888 455566666667778999999999998888753
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1e-11 Score=142.28 Aligned_cols=397 Identities=15% Similarity=0.084 Sum_probs=272.4
Q ss_pred hhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----C--hHHHHHHHHHHHHHhhccCcchH
Q 004187 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL----Q--VPLWRCYIRFIRKVYEKKGTEGQ 111 (770)
Q Consensus 38 i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p----~--~~lW~~y~~~~~~~~~~~~~~~~ 111 (770)
.+.|...|..++...|.+.-..+--+.+....++|-.|..+|.++|..+| + +.+|.|+++.-. .
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~----------~ 215 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGM----------S 215 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccc----------h
Confidence 68899999999999999998888888888888999999999999999986 2 457888777643 3
Q ss_pred HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-cccc---------------H
Q 004187 112 EETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHH---------------V 175 (770)
Q Consensus 112 e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~---------------~ 175 (770)
+.+..+|+++|+. ||.+......+..+.+.... .+.+..+...++++-.. +.+. +
T Consensus 216 ~~a~~a~~ralqL---dp~~v~alv~L~~~~l~~~d------~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy 286 (1018)
T KOG2002|consen 216 EKALLAFERALQL---DPTCVSALVALGEVDLNFND------SDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDY 286 (1018)
T ss_pred hhHHHHHHHHHhc---ChhhHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccH
Confidence 6789999988885 88999887777777665322 35677788888888765 3221 1
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHH----------HhHHHHHHHHHHHHHHHHHHHhhhhccC-CCCCCChhhHHHHHHH
Q 004187 176 EQLWKDYENFENSVSRQLAKGLLSE----------YQSKYTSARAVYRERKKYCEEIDWNMLA-VPPTGSYKEEQQWIAW 244 (770)
Q Consensus 176 ~~l~~~y~~fe~~~~~~la~~ll~e----------~~~~y~~A~~v~k~~~~~~~~L~~~~~~-v~p~~~~~~~~~~~lw 244 (770)
..+|..+..-. .....+.++.+ ..++|++|...|-+ .+..+.-+ +-|.- .+-
T Consensus 287 ~~v~~la~~ai---~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~------s~k~~~d~~~l~~~--------Glg 349 (1018)
T KOG2002|consen 287 ERVWHLAEHAI---KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME------SLKADNDNFVLPLV--------GLG 349 (1018)
T ss_pred HHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH------HHccCCCCcccccc--------chh
Confidence 12222111111 11111111111 12344444444332 22211111 11110 011
Q ss_pred HHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHH
Q 004187 245 KRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG----SIDAAIKVFQRALKALPDSEMLRY 320 (770)
Q Consensus 245 ~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g----~~e~A~~v~erAi~~~P~s~~lw~ 320 (770)
.-||. .+..+...++|++.+..+|++.+...-++.+|...+ ..+.|..++.++++..|.+...|+
T Consensus 350 Qm~i~-----------~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 350 QMYIK-----------RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred HHHHH-----------hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 11110 134566788999999999999999999999998875 578899999999999999999999
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhcc-----CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC----CCC------CH
Q 004187 321 AFAELEESRGAIAAAKKLYESLLTD-----SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS----PNF------TY 385 (770)
Q Consensus 321 ~~a~~~~~~g~~e~A~~iye~al~~-----~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~----~~~------~~ 385 (770)
.++.+++...-. .+...|.+|+.. .+. ...+..+.+-...+.|.++.|...|++|... .+. ..
T Consensus 419 ~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~i-p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 419 ELAQLLEQTDPW-ASLDAYGNALDILESKGKQI-PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCC-CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 999998875433 336667666621 222 4677788888888899999999999999865 111 12
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 004187 386 HVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQF 465 (770)
Q Consensus 386 ~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~f 465 (770)
..-+++|.++-+. ++.+.|.++|...++.+|...+.++..+-+....++..+|...+..++.... .+..+|.-+..+
T Consensus 497 t~~YNlarl~E~l-~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--~np~arsl~G~~ 573 (1018)
T KOG2002|consen 497 TLKYNLARLLEEL-HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS--SNPNARSLLGNL 573 (1018)
T ss_pred HHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc--CCcHHHHHHHHH
Confidence 2355677776554 8999999999999999998888777777777777889999999999998765 667888877766
Q ss_pred HHHcCCHHHHHHHHHHHHHhc
Q 004187 466 EQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 466 E~~~Gd~~~~~k~~~R~~~~~ 486 (770)
+........+.+-+.++.+..
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhh
Confidence 655544444445444444433
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=1.4e-13 Score=160.04 Aligned_cols=218 Identities=10% Similarity=-0.048 Sum_probs=182.8
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS---------GSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIA 333 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~---------g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e 333 (770)
..+.++..|++++..+|+++.+|..+|.++... +++++|...+++|++..|++..+|..+|.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 456788999999999999999999999876543 34789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 004187 334 AAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 413 (770)
Q Consensus 334 ~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~al 413 (770)
+|...|+++++.+|+ ...+|..++..+...|++++|+..|+++++..|.....+...+.+.+.. |++++|...+++++
T Consensus 356 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~-g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH-TGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence 999999999999998 7899999999999999999999999999999887665555555555564 89999999999999
Q ss_pred HhC-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 414 KRF-MHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 414 k~~-p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
+.. |+++..+...+.++..+|++++|+..+++++...| .....+..........|+ .+...+++..+..
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI--TGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 885 78899999999999999999999999999887766 445555555555445553 5555555544443
No 52
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=7.7e-12 Score=141.22 Aligned_cols=411 Identities=14% Similarity=0.173 Sum_probs=281.1
Q ss_pred hhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHH
Q 004187 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRK 116 (770)
Q Consensus 38 i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~ 116 (770)
.++-...++.-+..++.+......||.+..+.|++++.+..=+.+....| ++.+|+.|+.-+..... .++...+..
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~---s~~~~~v~~ 171 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQ---SEERKEVEE 171 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---CcchhHHHH
Confidence 44445566777777888888888899999999999999988888888888 78999999998776432 467788999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc---ccccHHHHHHHHHHHHHHhhHhH
Q 004187 117 AFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT---PTHHVEQLWKDYENFENSVSRQL 193 (770)
Q Consensus 117 ~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~---P~~~~~~l~~~y~~fe~~~~~~l 193 (770)
.|+++|. |.++..||.+|+.|+-...+. +...+.++..|.+|+++|.. -...-..+|..|..|+..+-...
T Consensus 172 ~~ekal~----dy~~v~iw~e~~~y~~~~~~~--~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~ 245 (881)
T KOG0128|consen 172 LFEKALG----DYNSVPIWEEVVNYLVGFGNV--AKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNV 245 (881)
T ss_pred HHHHHhc----ccccchHHHHHHHHHHhcccc--ccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhH
Confidence 9998874 788999999999998876543 22235688899999999987 33456789999999997642111
Q ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHH--HHHHHHHcCCCCCCcchhhhHHHHH
Q 004187 194 -AKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWK--RLLTFEKGNPQRIDTASSNKRIIFT 270 (770)
Q Consensus 194 -a~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~--~yi~~ek~n~~~ld~~~~~~r~~~~ 270 (770)
..+++. . +...+.+. .....-..++.-|. -+..-+..++. +.....+.....
T Consensus 246 ~~~qv~a-----------~------~~~el~~~------~D~~~~~~~~~~~sk~h~~~~~~~~~~--~a~~~l~~~~~~ 300 (881)
T KOG0128|consen 246 EQRQVIA-----------L------FVRELKQP------LDEDTRGWDLSEQSKAHVYDVETKKLD--DALKNLAKILFK 300 (881)
T ss_pred HHHHHHH-----------H------HHHHHhcc------chhhhhHHHHHHHHhcchHHHHhccHH--HHHHHHHHHHHH
Confidence 111110 0 12222211 10000011111122 12222222211 111233566778
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCCC
Q 004187 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEES-RGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 271 ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~-~g~~e~A~~iye~al~~~p~~ 349 (770)
+++.+...+....-|+.|..+....|+.-.-..+++|++...+.+..+|+.|+.+... ++-.+.+..+|-+++..+|.
T Consensus 301 ~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~- 379 (881)
T KOG0128|consen 301 FERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW- 379 (881)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCch-
Confidence 8899999999999999999999999999999999999999999999999999887654 34446677899999999998
Q ss_pred cHHHHHHHHHHHHH-hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHhC----CC-
Q 004187 350 TALAHIQFIRFLRR-TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ-----DKDPKLAHNVFEAGLKRF----MH- 418 (770)
Q Consensus 350 ~~~~w~~~~~~~~r-~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~-----~g~~~~A~~ife~alk~~----p~- 418 (770)
...+|-.+...+.| ..........+.+++...- ..+..+......+ ..+++.-++.|..|...+ .+
T Consensus 380 tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~---~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~ 456 (881)
T KOG0128|consen 380 TGDLWKRALLALERNREEITVIVQNLEKDLSMTV---ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQ 456 (881)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH---HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 67888766633333 3344455555666664321 1222221111111 134566677777776542 22
Q ss_pred ---cHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 419 ---EPAYILEYADFLSRL-NDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 419 ---~~~~~l~ya~~l~~~-g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
...++..++.++..+ ++.+++|.+.+..+..-. ......|..++.+|..+|+...++++++++.....
T Consensus 457 ~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~-~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~ 528 (881)
T KOG0128|consen 457 LDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG-GSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVV 528 (881)
T ss_pred hhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCc-chHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCc
Confidence 235667778888765 688999999999887633 23334999999999999999999998888887665
No 53
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.60 E-value=5.3e-12 Score=133.36 Aligned_cols=401 Identities=16% Similarity=0.214 Sum_probs=275.9
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHH
Q 004187 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFML 122 (770)
Q Consensus 44 ~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL 122 (770)
-.+.-++-+|++..-|..+++.+...+.+++.+++|+.++.-+| -...|..|+.=+...++ ++.+..+|.+||
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~d------f~svE~lf~rCL 103 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKD------FRSVESLFGRCL 103 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhh------HHHHHHHHHHHH
Confidence 35566788999999999999999999999999999999999888 56899999998877665 678999999999
Q ss_pred HhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc----ccccHHHHHHHHHHHHHHhhHhHHHHHH
Q 004187 123 SHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT----PTHHVEQLWKDYENFENSVSRQLAKGLL 198 (770)
Q Consensus 123 ~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~----P~~~~~~l~~~y~~fe~~~~~~la~~ll 198 (770)
... .+.++|.-|+.+.....+... .+.-..+-++|+-.+.. |. .+.+|.+|..|.+.....-.
T Consensus 104 ~k~----l~ldLW~lYl~YIRr~n~~~t---Gq~r~~i~~ayefv~~~~~~e~~--s~~~W~ey~~fle~~~~~~k---- 170 (660)
T COG5107 104 KKS----LNLDLWMLYLEYIRRVNNLIT---GQKRFKIYEAYEFVLGCAIFEPQ--SENYWDEYGLFLEYIEELGK---- 170 (660)
T ss_pred hhh----ccHhHHHHHHHHHHhhCcccc---cchhhhhHHHHHHHHhccccccc--ccchHHHHHHHHHhcccccc----
Confidence 763 457899999999876533211 12334455667776653 33 36789999998765422110
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCC----CCC--CcchhhhHHHHHHH
Q 004187 199 SEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNP----QRI--DTASSNKRIIFTYE 272 (770)
Q Consensus 199 ~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~----~~l--d~~~~~~r~~~~ye 272 (770)
-+.+.+.+..|..|.+ +| .+ |-+. .-.+|+.|-+||..-. .+. +....+-.++..|+
T Consensus 171 wEeQqrid~iR~~Y~r------al-----~t-P~~n-----leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yq 233 (660)
T COG5107 171 WEEQQRIDKIRNGYMR------AL-----QT-PMGN-----LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQ 233 (660)
T ss_pred HHHHHHHHHHHHHHHH------HH-----cC-cccc-----HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 1124455555565554 22 22 2221 2257888888775311 011 11123333444455
Q ss_pred HHHHH-------cC-----------CCHHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 273 QCLMY-------LY-----------HYPDIWYDYATWNAKSG-----S--IDAAIKVFQRALKALPDSEMLRYAFAELEE 327 (770)
Q Consensus 273 ~aL~~-------~p-----------~~~~~w~~~a~~l~~~g-----~--~e~A~~v~erAi~~~P~s~~lw~~~a~~~~ 327 (770)
+..-. +| ....-|+.++.|..+.+ + .....-+|+.++...|-..++|+-|..+..
T Consensus 234 e~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~ 313 (660)
T COG5107 234 EIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLI 313 (660)
T ss_pred HHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 44421 11 12235999999998865 2 234556899999999999999999999999
Q ss_pred HhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-----------------CCC--CHHH-
Q 004187 328 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS-----------------PNF--TYHV- 387 (770)
Q Consensus 328 ~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~-----------------~~~--~~~~- 387 (770)
..++-++|.+.-++++..+|. +.+.++.++.-..+.++...+|+++++. ++. ..+.
T Consensus 314 ~isd~q~al~tv~rg~~~sps----L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell 389 (660)
T COG5107 314 GISDKQKALKTVERGIEMSPS----LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELL 389 (660)
T ss_pred hccHHHHHHHHHHhcccCCCc----hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHH
Confidence 999999999999999988875 5667777777777777777777776531 111 1111
Q ss_pred HHHH--------HHHHHh-cCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHH
Q 004187 388 YVAY--------ALMAFC-QDKDPKLAHNVFEAGLKRF--MHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESI 456 (770)
Q Consensus 388 yi~~--------a~le~~-~~g~~~~A~~ife~alk~~--p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~ 456 (770)
+... ..+.+. .....+.|+++|-++-+.- .++.-+...|+.++ ..|++.-|..+|+-.+..+| ++.
T Consensus 390 ~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~--d~~ 466 (660)
T COG5107 390 LKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFP--DST 466 (660)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCC--Cch
Confidence 1111 111111 1245788999999888764 33333444555544 35788999999999999999 777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 457 EVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 457 ~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..-..|+.|....+|-..++.+++...+.+.
T Consensus 467 ~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 467 LYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 8888999999999999999998887666665
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=6e-13 Score=147.49 Aligned_cols=287 Identities=15% Similarity=0.135 Sum_probs=218.9
Q ss_pred ChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----ChHHHHHHHHHHHHHhhccCcchHH
Q 004187 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL----QVPLWRCYIRFIRKVYEKKGTEGQE 112 (770)
Q Consensus 37 ~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p----~~~lW~~y~~~~~~~~~~~~~~~~e 112 (770)
+..+|..+|++.-...++..-+..+.+..|...+++++++++|+++-...| +.+++-.-+-...+.
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---------- 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---------- 403 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----------
Confidence 678899999997788888887777999999999999999999999988887 244433333333221
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhH
Q 004187 113 ETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSR 191 (770)
Q Consensus 113 ~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~ 191 (770)
.....+. -..+..+|.+..-|-...++.- -++..+.|.+.|+|||+. |........
T Consensus 404 v~Ls~La--q~Li~~~~~sPesWca~GNcfS---------LQkdh~~Aik~f~RAiQldp~faYayTL------------ 460 (638)
T KOG1126|consen 404 VALSYLA--QDLIDTDPNSPESWCALGNCFS---------LQKDHDTAIKCFKRAIQLDPRFAYAYTL------------ 460 (638)
T ss_pred HHHHHHH--HHHHhhCCCCcHHHHHhcchhh---------hhhHHHHHHHHHHHhhccCCccchhhhh------------
Confidence 1112222 2334478999999999988854 367789999999999988 543210000
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHH
Q 004187 192 QLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTY 271 (770)
Q Consensus 192 ~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~y 271 (770)
.| .+++..+ .++.++..|
T Consensus 461 ----------------------------------------lG-----------hE~~~~e-----------e~d~a~~~f 478 (638)
T KOG1126|consen 461 ----------------------------------------LG-----------HESIATE-----------EFDKAMKSF 478 (638)
T ss_pred ----------------------------------------cC-----------ChhhhhH-----------HHHhHHHHH
Confidence 00 0011111 223456789
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcH
Q 004187 272 EQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA 351 (770)
Q Consensus 272 e~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~ 351 (770)
+.||.++|.+..+||-++..|.++++++.|.-.|++|+..+|.+..+...++.++.+.|+.|+|..+|++|+..+|. +.
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 56
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
...+..+..+...+++++|...+++.-+..+....++..++.+.-.. |+.+.|..-|--|+...|.-.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~-~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL-GNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH-ccchHHHHhhHHHhcCCCccc
Confidence 66677777777788888888888888777777777777777775443 788888888877777776633
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=1.1e-10 Score=139.38 Aligned_cols=404 Identities=12% Similarity=0.038 Sum_probs=245.1
Q ss_pred hhhhccccCCCCCHHHHHHHHH-HhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-
Q 004187 10 SEENITGVADKYNVETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL- 87 (770)
Q Consensus 10 ~e~~i~~~~~P~d~~aw~~l~~-~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p- 87 (770)
+++.++ .+|.+..+...++. ....++.++|+..+++++...|.....-...+..+...|++++|..+|++++...|
T Consensus 57 L~qaL~--~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~ 134 (822)
T PRK14574 57 LQEESK--AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT 134 (822)
T ss_pred HHHHHh--hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666 77777322223333 22346777788888888732333333333336677777888888888888888877
Q ss_pred ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHH
Q 004187 88 QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRA 167 (770)
Q Consensus 88 ~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqra 167 (770)
+.+++...+......+ ..+++.+.+++++. .+|.. ......+.+... .++...|..+|+++
T Consensus 135 n~~~l~gLa~~y~~~~------q~~eAl~~l~~l~~---~dp~~-~~~l~layL~~~---------~~~~~~AL~~~ekl 195 (822)
T PRK14574 135 NPDLISGMIMTQADAG------RGGVVLKQATELAE---RDPTV-QNYMTLSYLNRA---------TDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHhhcC------CHHHHHHHHHHhcc---cCcch-HHHHHHHHHHHh---------cchHHHHHHHHHHH
Confidence 5666654433333322 24455555554433 34432 122222222211 12333377777777
Q ss_pred Hcc-ccccHHHHHHHHHHHHHHhh-HhHHHHHHHHHh-------------------------------HHHHHHHHHHHH
Q 004187 168 VVT-PTHHVEQLWKDYENFENSVS-RQLAKGLLSEYQ-------------------------------SKYTSARAVYRE 214 (770)
Q Consensus 168 l~~-P~~~~~~l~~~y~~fe~~~~-~~la~~ll~e~~-------------------------------~~y~~A~~v~k~ 214 (770)
+.. |.+ ..++..|..-....+ ...+.+++.++. ..|..+.+.+.+
T Consensus 196 l~~~P~n--~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLAPTS--EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 766 543 122222222222211 112222222211 122222223332
Q ss_pred HHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHc---CCCHHHHHHHHHH
Q 004187 215 RKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYL---YHYPDIWYDYATW 291 (770)
Q Consensus 215 ~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~---p~~~~~w~~~a~~ 291 (770)
...+.... ...|+... .|.+ +....-- -+..-...+.|+..|+...... |.+ +-..+|..
T Consensus 274 ~~~l~~~~----~~~p~~~~--------~~~~-~~~Drl~--aL~~r~r~~~vi~~y~~l~~~~~~~P~y--~~~a~ada 336 (822)
T PRK14574 274 YQNLLTRW----GKDPEAQA--------DYQR-ARIDRLG--ALLVRHQTADLIKEYEAMEAEGYKMPDY--ARRWAASA 336 (822)
T ss_pred HHHHHhhc----cCCCccch--------HHHH-HHHHHHH--HHHHhhhHHHHHHHHHHhhhcCCCCCHH--HHHHHHHH
Confidence 22222211 01222110 1211 1000000 0000134567778888777443 444 55667899
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC--------------CcH
Q 004187 292 NAKSGSIDAAIKVFQRALKALP------DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN--------------TTA 351 (770)
Q Consensus 292 l~~~g~~e~A~~v~erAi~~~P------~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~--------------~~~ 351 (770)
|...+++++|..+|++++...| .+......+--.+...+++++|..+.++..+..|. +..
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 9999999999999999988653 23332344444556789999999999999875441 123
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 431 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~ 431 (770)
.+....+..+...|++.+|.+.+++.+...|.+..+++.+|.++... |.+.+|+++++.++...|++..+....+....
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R-g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR-DLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 45556677778889999999999999999999999999999998775 99999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCchh
Q 004187 432 RLNDDRNIRALFERALSSLPPEE 454 (770)
Q Consensus 432 ~~g~~~~Ar~lferaL~~~p~~~ 454 (770)
.++++.+|..+.+.+++..|++.
T Consensus 496 ~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 496 ALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999999443
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=2.5e-12 Score=130.67 Aligned_cols=187 Identities=13% Similarity=0.067 Sum_probs=168.9
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
.++.+...|++++...|.+..+|..++.++...|++++|.+.|++++...|.+...++.++.++...|++++|.+.|+++
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHH
Q 004187 343 LTDSVN-TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 421 (770)
Q Consensus 343 l~~~p~-~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~ 421 (770)
+..... ....+|..++..+...|++++|...|.++++..+.....+..++.+.+.. |++++|...++++++..++++.
T Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 126 IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR-GQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHH
Confidence 975422 14567888899999999999999999999998887788899999988775 9999999999999999888888
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004187 422 YILEYADFLSRLNDDRNIRALFERALSSL 450 (770)
Q Consensus 422 ~~l~ya~~l~~~g~~~~Ar~lferaL~~~ 450 (770)
.+...+.++...|+.+.|+.+.+.+....
T Consensus 205 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 205 SLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 88888999999999999999988876543
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=5.2e-14 Score=149.71 Aligned_cols=218 Identities=16% Similarity=0.103 Sum_probs=119.7
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
.+.++..|++++...+.++..+..++.+ ...+++++|.++++++.+..+ +...|..++.++...++++++..+++++.
T Consensus 60 ~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 137 (280)
T PF13429_consen 60 YDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLE 137 (280)
T ss_dssp ------------------------------------------------------------H-HHHTT-HHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456779999999999999999999988 788999999999999988764 46667778888899999999999999977
Q ss_pred ccCC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHH
Q 004187 344 TDSV-NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 422 (770)
Q Consensus 344 ~~~p-~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~ 422 (770)
.... .....+|+.++.++.+.|+.++|+.+|++|++..|.+..+...++.++... |+.++++++++...+..|+++.+
T Consensus 138 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~-~~~~~~~~~l~~~~~~~~~~~~~ 216 (280)
T PF13429_consen 138 ELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM-GDYDEAREALKRLLKAAPDDPDL 216 (280)
T ss_dssp H-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH-HTSCCH
T ss_pred hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHCcCHHHH
Confidence 5442 126789999999999999999999999999999888888888888887764 99999999999999998999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 423 ILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 423 ~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
|..++..+..+|++++|..+|+++++..| ++..+...++......|..+.+..+.+++.+.+
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~p--~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKLNP--DDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHT-------------------
T ss_pred HHHHHHHhccccccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999888 778889999999999999999999998887765
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=1.5e-10 Score=132.29 Aligned_cols=348 Identities=10% Similarity=0.077 Sum_probs=204.0
Q ss_pred CCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHH
Q 004187 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEE 113 (770)
Q Consensus 35 ~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ 113 (770)
.+++++|..++..++.+.|.+...|..++..+...|+.+.+...+-.|--+.| +.++|...+.+..+.++ ++.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~------i~q 225 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN------INQ 225 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc------HHH
Confidence 46899999999999999999999999999999999999999888888877777 67999999999888765 678
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhHh
Q 004187 114 TRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQ 192 (770)
Q Consensus 114 ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~~ 192 (770)
++-.|.+|++. +|.+..+...+..+++ +.|....|...|++++.. |... +..++..+...
T Consensus 226 A~~cy~rAI~~---~p~n~~~~~ers~L~~---------~~G~~~~Am~~f~~l~~~~p~~d-------~er~~d~i~~~ 286 (895)
T KOG2076|consen 226 ARYCYSRAIQA---NPSNWELIYERSSLYQ---------KTGDLKRAMETFLQLLQLDPPVD-------IERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHHhc---CCcchHHHHHHHHHHH---------HhChHHHHHHHHHHHHhhCCchh-------HHHHHHHHHHH
Confidence 99999988876 5555554445555543 357788888999999877 6222 22232221110
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh--hhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHH-
Q 004187 193 LAKGLLSEYQSKYTSARAVYRERKKYCEEID--WNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIF- 269 (770)
Q Consensus 193 la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~--~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~- 269 (770)
++.++. ..+-+.|.+. ++..+. ..... ...+.+...++--.+. .+++..
T Consensus 287 -~~~~~~--~~~~e~a~~~------le~~~s~~~~~~~---------~ed~ni~ael~l~~~q----------~d~~~~~ 338 (895)
T KOG2076|consen 287 -AHYFIT--HNERERAAKA------LEGALSKEKDEAS---------LEDLNILAELFLKNKQ----------SDKALMK 338 (895)
T ss_pred -HHHHHH--hhHHHHHHHH------HHHHHhhcccccc---------ccHHHHHHHHHHHhHH----------HHHhhHH
Confidence 000000 0011222222 112221 00111 1112222222211110 111111
Q ss_pred HHHHHH---H------------------HcC------CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CcHHH
Q 004187 270 TYEQCL---M------------------YLY------HYPDI-WYDYATWNAKSGSIDAAIKVFQRALKAL--P-DSEML 318 (770)
Q Consensus 270 ~ye~aL---~------------------~~p------~~~~~-w~~~a~~l~~~g~~e~A~~v~erAi~~~--P-~s~~l 318 (770)
+-+.+- + .++ -+-.+ ....+.+....+...+++. ...+..+ | +...+
T Consensus 339 i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll--~~l~~~n~~~~d~~dL 416 (895)
T KOG2076|consen 339 IVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALL--HFLVEDNVWVSDDVDL 416 (895)
T ss_pred HHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHH--HHHHHhcCChhhhHHH
Confidence 111111 0 000 01122 3333333333333433333 2233332 3 34667
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004187 319 RYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ 398 (770)
Q Consensus 319 w~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~ 398 (770)
++..+..+.+.|++..|..+|..++...+..+..+|...+.++...+.++.|...|++++...|.+.++.+.++.+...+
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQL 496 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc
Confidence 77777777777777777777777777766655667777777777777777777777777777777777777777776554
Q ss_pred CCCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHhcCChhH
Q 004187 399 DKDPKLAHNVFEAGLKRF---------MHEPAYILEYADFLSRLNDDRN 438 (770)
Q Consensus 399 ~g~~~~A~~ife~alk~~---------p~~~~~~l~ya~~l~~~g~~~~ 438 (770)
|+.++|.++++....-. +.+..+...+++.+...|+.++
T Consensus 497 -g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 497 -GNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred -CCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 77777777776644211 1123455566666666666655
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=7.4e-12 Score=145.80 Aligned_cols=208 Identities=10% Similarity=-0.050 Sum_probs=170.3
Q ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 262 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
...+.+...+++++..+|+++.+|..++.++...|++++|...|++|++.+|++...|+.+|.++...|++++|...|++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 342 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 342 al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~-~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
+++.+|. ....+..++..+...|++++|+..+++++... +.....+..++.++... |+.++|+..+++.+...|+..
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~-G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK-GKHELARKLTKEISTQEITGL 475 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccchhH
Confidence 9999998 45555555555666899999999999998763 55677777778776664 999999999999988888888
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 004187 421 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDST 475 (770)
Q Consensus 421 ~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~ 475 (770)
..+...+..+...| ++|...+++.++.........-| ...|+.-.|+.+..
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~ 526 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAE 526 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHH
Confidence 88877777777777 48888888877643311111112 55666677887433
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=5.5e-10 Score=118.03 Aligned_cols=215 Identities=13% Similarity=0.076 Sum_probs=184.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 004187 268 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV 347 (770)
Q Consensus 268 ~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p 347 (770)
...-+.++..+..++.+....+.....+|++++|.+.|..|+..........+..+..++.+|+.++|.++|-++-.+--
T Consensus 476 qqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 476 QQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 34557788888888888888888888899999999999999999888899999999999999999999999988766555
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004187 348 NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA 427 (770)
Q Consensus 348 ~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya 427 (770)
+ +..+.+++++.+...++...|++++.++...-|..+.+...++.+.-. .|+...|.+++-.....||.+.+...-++
T Consensus 556 n-n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq-egdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 556 N-NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ-EGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred h-hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-ccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 5 688999999999999999999999999999888889999999998555 59999999999999999999998877777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcc
Q 004187 428 DFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFE-QMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 428 ~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE-~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.|++...-.+++..+||+|--..| . ..-|.-++.-. .+.|++..+...++..-..||
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp--~-~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQP--N-QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCc--c-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 888888788999999999987766 2 23365554433 367999999999999999999
No 61
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=9.2e-11 Score=133.95 Aligned_cols=364 Identities=12% Similarity=0.071 Sum_probs=231.0
Q ss_pred chhhhhccccCCCCCHHHHHHHHHHhcC-CChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 004187 8 PESEENITGVADKYNVETAEILANSALH-LPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 86 (770)
Q Consensus 8 ~e~e~~i~~~~~P~d~~aw~~l~~~~~~-~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~ 86 (770)
..+++.|+ ++|.+..+|..|+..++. ++++++...+--+-..+|.+.++|+.+++.-.+.|++.+|+-+|.|++...
T Consensus 160 ~i~~EvIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 160 EILMEVIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred HHHHHHHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 45677888 999999999999998876 599999999999999999999999999999999999999999999999999
Q ss_pred C-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChh-----hHHHHHHHHhhCCcCchHHHHHHHHHH
Q 004187 87 L-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGP-----IWLEYITFLKSLPALNAQEESQRMIAI 160 (770)
Q Consensus 87 p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~-----lW~~yi~fl~~~~~~~~~~~~~~~~~a 160 (770)
| +.++-..++.+..++++ ...+..-|.+.++.++ |-+.. +|...-.|.. ..+.+.|
T Consensus 238 p~n~~~~~ers~L~~~~G~------~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~~~~~----------~~~~e~a 299 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGD------LKRAMETFLQLLQLDP--PVDIERIEDLIRRVAHYFIT----------HNERERA 299 (895)
T ss_pred CcchHHHHHHHHHHHHhCh------HHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHHHHH----------hhHHHHH
Confidence 8 77888888888888876 4578888888888754 11111 2322112211 2223777
Q ss_pred HHHHHHHHcc-------cccc-HHHHHHHHHHHHHHhhHhHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHhhhhccCC
Q 004187 161 RKAYQRAVVT-------PTHH-VEQLWKDYENFENSVSRQLAKGLLSEYQSKY---TSARAVYRERKKYCEEIDWNMLAV 229 (770)
Q Consensus 161 r~vyqral~~-------P~~~-~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y---~~A~~v~k~~~~~~~~L~~~~~~v 229 (770)
.+.++.++.. |..+ ...++..+..|.+.+.. +......+. ...-..+.++...... ...+
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~-----i~~~~~r~~e~d~~e~~~~~~~~~~~~~----~~~~ 370 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK-----IVDDRNRESEKDDSEWDTDERRREEPNA----LCEV 370 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH-----HHHHhccccCCChhhhhhhhhccccccc----cccC
Confidence 7777777762 1111 12222222222221100 000000000 0000000000000000 0011
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004187 230 PPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYL---YHYPDIWYDYATWNAKSGSIDAAIKVFQ 306 (770)
Q Consensus 230 ~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~---p~~~~~w~~~a~~l~~~g~~e~A~~v~e 306 (770)
+..-+ -.+...+-.+.....+.. +.+-.+..-.+..+ ...++++++++..+...|++.+|+..|.
T Consensus 371 ~~~~s----~~l~v~rl~icL~~L~~~--------e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 371 GKELS----YDLRVIRLMICLVHLKER--------ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred CCCCC----ccchhHhHhhhhhccccc--------chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11000 001111111111111100 00011111112222 3567899999999999999999999999
Q ss_pred HHHHhCC-CcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC---
Q 004187 307 RALKALP-DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN--- 382 (770)
Q Consensus 307 rAi~~~P-~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~--- 382 (770)
.++...+ .+..+|+.+|.|+..+|.+++|...|+++|...|+ ..++.+.++.++.+.|+.++|.+++.+...-++
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 9999876 45789999999999999999999999999999998 789999999999999999999999998663221
Q ss_pred --C----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004187 383 --F----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 383 --~----~~~~yi~~a~le~~~~g~~~~A~~ife~alk 414 (770)
+ ...+......++... |+.++-..+--.++.
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~-gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQV-GKREEFINTASTLVD 554 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 1 122333344444443 777765554444444
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.44 E-value=1.4e-11 Score=121.09 Aligned_cols=188 Identities=15% Similarity=0.081 Sum_probs=168.3
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
....+..-++++|+.+|.++.+|...|.++...|..+.|.+.|++|++..|++.++..+|+-|+..+|.+++|...|+++
T Consensus 50 d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~A 129 (250)
T COG3063 50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA 129 (250)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence 44567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHH
Q 004187 343 LTDSVN-TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 421 (770)
Q Consensus 343 l~~~p~-~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~ 421 (770)
+....- ..+..|-+.+-+..+.|+.+.|+..|+++++..+........++.+++.. |++-.|+..+++-....+-..+
T Consensus 130 l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~-~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 130 LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA-GDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc-ccchHHHHHHHHHHhcccccHH
Confidence 985321 14678889999999999999999999999999998899999999999986 9999999999999998877777
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 422 YILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 422 ~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
.+..-+++....|+-+.+-..=.+.-+.+|
T Consensus 209 sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 209 SLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 777788999999998777666556556777
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=7.1e-10 Score=124.51 Aligned_cols=289 Identities=13% Similarity=-0.026 Sum_probs=178.8
Q ss_pred CCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHHHhhccCcchHH
Q 004187 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQV--PLWRCYIRFIRKVYEKKGTEGQE 112 (770)
Q Consensus 35 ~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~--~lW~~y~~~~~~~~~~~~~~~~e 112 (770)
.++++.|++...++....|+..-.+...++...+.|+++.+...|+++++..|+. .+...++......++ .+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~------~~ 170 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE------LH 170 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC------HH
Confidence 4578888888888888888777777777888888888888888888888877743 466667777666554 56
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhH
Q 004187 113 ETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSR 191 (770)
Q Consensus 113 ~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~ 191 (770)
.+.+.++.+++. +|.+..++..+..... +.++.+.+...+++.++. .... ... .
T Consensus 171 ~Al~~l~~l~~~---~P~~~~~l~ll~~~~~---------~~~d~~~a~~~l~~l~k~~~~~~-~~~----~-------- 225 (409)
T TIGR00540 171 AARHGVDKLLEM---APRHKEVLKLAEEAYI---------RSGAWQALDDIIDNMAKAGLFDD-EEF----A-------- 225 (409)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHH---------HHhhHHHHHHHHHHHHHcCCCCH-HHH----H--------
Confidence 777777766664 5666566666655533 456677777777766654 1110 000 0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHH
Q 004187 192 QLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTY 271 (770)
Q Consensus 192 ~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~y 271 (770)
..+...|..++.-.... .....+
T Consensus 226 ----------------------------------------------~l~~~a~~~~l~~~~~~-----------~~~~~L 248 (409)
T TIGR00540 226 ----------------------------------------------DLEQKAEIGLLDEAMAD-----------EGIDGL 248 (409)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHh-----------cCHHHH
Confidence 00001222222110000 001234
Q ss_pred HHHHHHcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH--HHHHHHhCcHHHHHHHHHHHhcc
Q 004187 272 EQCLMYLY----HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAF--AELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 272 e~aL~~~p----~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~--a~~~~~~g~~e~A~~iye~al~~ 345 (770)
+++....| +++.+++.++..+...|+.++|.++++++++..|++....+.. .......++.+++.+.++++++.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44454455 6889999999999999999999999999999999887532111 11112235566677777777776
Q ss_pred CCCCcH--HHHHHHHHHHHHhcCHHHHHHHHH--HHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004187 346 SVNTTA--LAHIQFIRFLRRTEGVEAARKYFL--DARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 346 ~p~~~~--~~w~~~~~~~~r~~~~e~A~~~f~--~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk 414 (770)
.|+ +. .+...++..+.+.|++++|++.|+ .+++..+. ...+..++.++... |+.++|.++|++++.
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~-g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQA-GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 666 44 455566666666666666666666 34444332 33344556655553 666666666666654
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.4e-09 Score=114.99 Aligned_cols=216 Identities=14% Similarity=0.138 Sum_probs=184.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 004187 268 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV 347 (770)
Q Consensus 268 ~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p 347 (770)
..+=-+.+...|+.+--|+..|.+|...|++++|+..|.++...+|.-...|+.||..+...++-|+|...|.+|-+..+
T Consensus 298 f~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 298 FLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred HHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 33445666789999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----Cc---H
Q 004187 348 NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM----HE---P 420 (770)
Q Consensus 348 ~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p----~~---~ 420 (770)
. ...-.+.++--+.+.++++-|.++|.+|....|..+-++...+.+.|.. +.+.+|...|+.++..-+ .. .
T Consensus 378 G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 378 G-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred C-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHhhhccccccchh
Confidence 6 3233333344456689999999999999999998888888899887764 899999999999995422 22 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 421 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 421 ~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..|...+..+.+++.+++|...|+++|...| ++...+...+-.....|+++.+...+.+++-.-|
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~--k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSP--KDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC--CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 3467889999999999999999999999988 6677777777777788999999999999998887
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=3.1e-11 Score=129.32 Aligned_cols=199 Identities=13% Similarity=0.088 Sum_probs=150.9
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
....++..|++++..+|+++.+|+.++.++...|++++|...|+++++..|++...|+.+|.++...|++++|.+.|+++
T Consensus 79 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 79 LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------H
Q 004187 343 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS-PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL-------K 414 (770)
Q Consensus 343 l~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~-~~~~~~~yi~~a~le~~~~g~~~~A~~ife~al-------k 414 (770)
++..|.. .. ...+..+....++.++|...|++++.. ++..+. ++...+.. |+.+.+ +.++.+. +
T Consensus 159 l~~~P~~-~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~----~~~~~~~l-g~~~~~-~~~~~~~~~~~~~~~ 230 (296)
T PRK11189 159 YQDDPND-PY-RALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG----WNIVEFYL-GKISEE-TLMERLKAGATDNTE 230 (296)
T ss_pred HHhCCCC-HH-HHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH----HHHHHHHc-cCCCHH-HHHHHHHhcCCCcHH
Confidence 9999973 31 122223345567899999999877654 322221 23333333 655443 2444444 3
Q ss_pred hCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcC
Q 004187 415 RFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 415 ~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~G 470 (770)
..|+.++.|...+..+..+|++++|+..|++|++..| .+.++.-...++++...+
T Consensus 231 l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 231 LAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHh
Confidence 3455667899999999999999999999999999876 344555444454444433
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.41 E-value=6.5e-11 Score=126.88 Aligned_cols=216 Identities=17% Similarity=0.084 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 265 KRIIFTYEQCLMYLY----HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p----~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
+-.+..+.++|...+ ..++.|+..+.++...|+.++|+..|+++++..|++..+|+.+|.++...|++++|...|+
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344556777886444 3467799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 341 SLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 341 ~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
++++.+|+ ...+|..++..+...|++++|.+.|+++++..+..... ..+..+... .++.++|...|++.+...+.
T Consensus 123 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l~~~-~~~~~~A~~~l~~~~~~~~~-- 197 (296)
T PRK11189 123 SVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYLAES-KLDPKQAKENLKQRYEKLDK-- 197 (296)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHc-cCCHHHHHHHHHHHHhhCCc--
Confidence 99999998 78899999999999999999999999999987765421 112222222 47899999999887765432
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 421 AYILEYADFLSRLNDDRNIRALFERALSSLP-----PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 421 ~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p-----~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..|. +......+|+...+ ..++.+++.+. ..+..+.|...+......|+.+.+...++++.+..|
T Consensus 198 ~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 198 EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3343 33444456666544 35555554322 113457899999999999999999999999999887
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=6.2e-10 Score=124.97 Aligned_cols=217 Identities=12% Similarity=0.052 Sum_probs=155.4
Q ss_pred hHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 265 KRIIFTYEQCLMYLYHYP-DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~-~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
+++...|+++++..|.+. .+...++.++...|+++.|+..+++.++..|++..++..++.++.+.|++++|.+.+++++
T Consensus 135 ~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 135 ARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444555666665555553 4555556666666666666666666666666666666666666666666665555555544
Q ss_pred cc--------------------------------------CCC---CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC
Q 004187 344 TD--------------------------------------SVN---TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 344 ~~--------------------------------------~p~---~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~ 382 (770)
+. .|. ....++..++..+...|+++.|.++++++++..+
T Consensus 215 k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p 294 (409)
T TIGR00540 215 KAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG 294 (409)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence 32 221 1457888888899999999999999999999765
Q ss_pred CCHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHhcCChhHHHHHHH--HHHhCCCchh
Q 004187 383 FTYH----VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP--AYILEYADFLSRLNDDRNIRALFE--RALSSLPPEE 454 (770)
Q Consensus 383 ~~~~----~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~--~~~l~ya~~l~~~g~~~~Ar~lfe--raL~~~p~~~ 454 (770)
.... .+..+..+ . .++.+.+.+.++++++..|+++ .+...++.++.+.|++++|+..|+ .+++..| +
T Consensus 295 d~~~~~~~~l~~~~~l--~-~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p--~ 369 (409)
T TIGR00540 295 DDRAISLPLCLPIPRL--K-PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL--D 369 (409)
T ss_pred CcccchhHHHHHhhhc--C-CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC--C
Confidence 5443 22222222 2 4788999999999999999999 889999999999999999999999 5777766 4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 455 SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 455 ~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+.. +..++.+....|+.+.+.+++++.....-
T Consensus 370 ~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 370 AND-LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 333 55888888899999999999998866543
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2.4e-11 Score=124.02 Aligned_cols=225 Identities=14% Similarity=0.096 Sum_probs=194.9
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
..+++...++.+|+..| +++.+..++..|.+..+++.|+.+|..++...|.+.......|.+++..++.++|.++|+.+
T Consensus 238 m~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred ChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 45667778899998776 46888899999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CC-c
Q 004187 343 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF--MH-E 419 (770)
Q Consensus 343 l~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~--p~-~ 419 (770)
++.++. +.++.--.+.-+.--++.+-|..+|.+.++.+-.+.++|.+.+.+-... +.+|.+...|++++..- |+ .
T Consensus 317 lk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya-qQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 317 LKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA-QQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred HhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh-cchhhhHHHHHHHHhhccCcchh
Confidence 999887 3333322222233358899999999999999888899999999876654 89999999999999863 44 4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccc
Q 004187 420 PAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEE 492 (770)
Q Consensus 420 ~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~~e~ 492 (770)
.++|++........||++-|..+|.-||...+ +|.+.+..++.++.+.|++..++..+.-+....|..+|.
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~--~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA--QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCc--chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 58999999999999999999999999999887 889999999999999999999999999999999854443
No 69
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.34 E-value=5.6e-09 Score=116.73 Aligned_cols=135 Identities=17% Similarity=0.048 Sum_probs=114.1
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHH
Q 004187 276 MYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355 (770)
Q Consensus 276 ~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~ 355 (770)
...|+++.++..|+..+...|+.++|.++++++++ .|.+..+...|+.+ ..++.+++.+..++.++..|+ +..+++
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~-~~~l~l 332 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD-TPLLWS 332 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC-CHHHHH
Confidence 44577899999999999999999999999999999 45566766666665 348889999999999999998 788899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 004187 356 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF 416 (770)
Q Consensus 356 ~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~ 416 (770)
.+++++.+.+++++|+..|+++++..|. ...++.++.++... |+.++|..+|++++...
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~-g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRL-HKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999988775 56677788887775 99999999999998753
No 70
>PLN02789 farnesyltranstransferase
Probab=99.31 E-value=6.4e-10 Score=119.53 Aligned_cols=188 Identities=9% Similarity=-0.018 Sum_probs=163.3
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcH--HHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG-SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAI--AAAKKLY 339 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g-~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~--e~A~~iy 339 (770)
..++++.+++++|+.+|.+..+|...+.++...+ +++++++.+++++..+|++..+|...+.+....+.. +++..++
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 4568899999999999999999999999999998 579999999999999999999999998888888763 6788999
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCC----HHHHHHHHHHHH
Q 004187 340 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ--DKD----PKLAHNVFEAGL 413 (770)
Q Consensus 340 e~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~--~g~----~~~A~~ife~al 413 (770)
+++++.+|. +..+|...+-.....+.++++++.+.++++.++.+..+|...+.+.... .++ .+.+.....+++
T Consensus 132 ~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 132 RKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred HHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 999999998 8899999999999999999999999999999888899999988775442 122 356788888999
Q ss_pred HhCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 004187 414 KRFMHEPAYILEYADFLSR----LNDDRNIRALFERALSSLP 451 (770)
Q Consensus 414 k~~p~~~~~~l~ya~~l~~----~g~~~~Ar~lferaL~~~p 451 (770)
+..|++...|..+..++.. ++...+|...+++++...+
T Consensus 211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 9999999999888888877 3455678888888888655
No 71
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.30 E-value=1.2e-09 Score=122.26 Aligned_cols=218 Identities=11% Similarity=0.087 Sum_probs=175.9
Q ss_pred hhhHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYP-DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~-~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
..+++...|+++.+..|++. -.....++++...|++++|++.+++.++..|++..+...++.++.+.|++++|.+++.+
T Consensus 133 ~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~ 212 (398)
T PRK10747 133 DEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPS 212 (398)
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566778888888888774 33445588888889999999999999999999988888888888888888888877766
Q ss_pred HhccCCC-----------------------------------------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC
Q 004187 342 LLTDSVN-----------------------------------------TTALAHIQFIRFLRRTEGVEAARKYFLDARKS 380 (770)
Q Consensus 342 al~~~p~-----------------------------------------~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~ 380 (770)
+.+.... ....++..++..+...|+.++|..+++++++.
T Consensus 213 l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 213 MAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6643221 13456778888889999999999999999996
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHH
Q 004187 381 PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWK 460 (770)
Q Consensus 381 ~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~ 460 (770)
++ +..+...++.+ . .++.+++.+..++.++.+|+++.+++.++.++...+++++|+..|+++++..| +. ..+.
T Consensus 293 ~~-~~~l~~l~~~l--~-~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P--~~-~~~~ 365 (398)
T PRK10747 293 QY-DERLVLLIPRL--K-TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP--DA-YDYA 365 (398)
T ss_pred CC-CHHHHHHHhhc--c-CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CH-HHHH
Confidence 55 35555555554 2 48999999999999999999999999999999999999999999999999887 32 3345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 461 RFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 461 ~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.++..+...|+.+.+..++++......
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 678888899999999999998877553
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.2e-09 Score=115.15 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=158.4
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
.+++..|-+|...+|.+..+|+.+|..+.-.+..++|...|-+|-+..|.+..-.+-++.=+.+.+++..|.+.|..++.
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 45667889999999999999999999999999999999999999999998755444455566678899999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 004187 345 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS-------PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 417 (770)
Q Consensus 345 ~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~-------~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p 417 (770)
+.|. .+.+...++-.....+.+.+|..+|+.++.. .......+.+++.+..++ +.+++|+..|+++|...|
T Consensus 409 i~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl-~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 409 IAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL-NKYEEAIDYYQKALLLSP 486 (611)
T ss_pred cCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH-hhHHHHHHHHHHHHHcCC
Confidence 9998 6777777787778889999999999998831 111234678888887776 999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 418 HEPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 418 ~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
.++.++-..+-++..+|+++.|...|.++|...|
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999877
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=1.7e-07 Score=104.20 Aligned_cols=425 Identities=13% Similarity=0.108 Sum_probs=239.9
Q ss_pred CCCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHH
Q 004187 20 KYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRF 98 (770)
Q Consensus 20 P~d~~aw~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~ 98 (770)
|.........+..++.+++.+..++.+.+|+.||..++---..+-.....|+-++|...-.+++...+ +.-=|..|+-+
T Consensus 5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 5 PKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 44455666778888889999999999999999999999888888888889999999999999999887 66679999998
Q ss_pred HHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHH
Q 004187 99 IRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQ 177 (770)
Q Consensus 99 ~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~ 177 (770)
.+..++ .+++.+.|..||.. ++++.+||.+..-. +.+.++++.....-.+.++. |... .
T Consensus 85 ~R~dK~------Y~eaiKcy~nAl~~---~~dN~qilrDlslL---------Q~QmRd~~~~~~tr~~LLql~~~~r--a 144 (700)
T KOG1156|consen 85 QRSDKK------YDEAIKCYRNALKI---EKDNLQILRDLSLL---------QIQMRDYEGYLETRNQLLQLRPSQR--A 144 (700)
T ss_pred Hhhhhh------HHHHHHHHHHHHhc---CCCcHHHHHHHHHH---------HHHHHhhhhHHHHHHHHHHhhhhhH--H
Confidence 887665 68999999999885 78899999996544 23445666666666666655 4432 2
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCC-
Q 004187 178 LWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ- 256 (770)
Q Consensus 178 l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~- 256 (770)
-|..|.-- .- ..+.|..|..+..+ |+...+ ..|.....+.....+++..+..+.+..+
T Consensus 145 ~w~~~Avs---------~~----L~g~y~~A~~il~e---f~~t~~-----~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 145 SWIGFAVA---------QH----LLGEYKMALEILEE---FEKTQN-----TSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred HHHHHHHH---------HH----HHHHHHHHHHHHHH---HHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 23222210 00 12233333333332 211111 0111111111111222222222221100
Q ss_pred -----------------------CC-CcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 004187 257 -----------------------RI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNA-KSGSIDAAIKVFQRALKA 311 (770)
Q Consensus 257 -----------------------~l-d~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~-~~g~~e~A~~v~erAi~~ 311 (770)
.+ -.....+.+..+|...+..+|++.+-+..+-..+. -.+..+....+|.+.-+.
T Consensus 204 ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 204 ALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 00 00112233344444444444544444444443332 222222222334333333
Q ss_pred CCCcHH-------------HHHHHHHHHH---HhCc---HHHHHH---------HHHHHh-------ccC----------
Q 004187 312 LPDSEM-------------LRYAFAELEE---SRGA---IAAAKK---------LYESLL-------TDS---------- 346 (770)
Q Consensus 312 ~P~s~~-------------lw~~~a~~~~---~~g~---~e~A~~---------iye~al-------~~~---------- 346 (770)
.|.... +-..+..++. +.|- +...+. +.++.+ .-.
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 222110 0000000000 0000 001111 111111 100
Q ss_pred --CCCcHHHHHHH--HHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHH
Q 004187 347 --VNTTALAHIQF--IRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 422 (770)
Q Consensus 347 --p~~~~~~w~~~--~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~ 422 (770)
|. .+.+|..| ++...+.|+++.|..+.+.|+...|.-.+.|+.-|.|.-+ .|++++|..+++.+.+.+-.+..+
T Consensus 364 ~E~P-ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH-~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 364 QEPP-TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKH-AGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cCCc-hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHh-cCChHHHHHHHHHHHhccchhHHH
Confidence 11 35678654 4566678999999999999999999888999999998655 599999999999999887655555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC-C----chhHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcc
Q 004187 423 ILEYADFLSRLNDDRNIRALFERALSSL-P----PEESIEVWKRFTQFEQ--MYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 423 ~l~ya~~l~~~g~~~~Ar~lferaL~~~-p----~~~~~~lw~~~~~fE~--~~Gd~~~~~k~~~R~~~~~~ 487 (770)
-..++.+..+.++.++|-.+.-...+.- . -.+...+|.....-+. +.|.+..+.+-+.-+.+.+.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5588999999999888877665443321 0 0133456655444332 33444444443333333333
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=5.5e-08 Score=109.97 Aligned_cols=415 Identities=16% Similarity=0.106 Sum_probs=245.0
Q ss_pred CCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--C-ChHHHHHHH
Q 004187 21 YNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC--L-QVPLWRCYI 96 (770)
Q Consensus 21 ~d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~--p-~~~lW~~y~ 96 (770)
+|...|..|.-.+ ..+++..+.+.||+++..--...+.|..+.--+...|....|..+.+.++... | ++...++..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5666666664433 34578888889999887766778899999999999999889999999999888 5 345555555
Q ss_pred HHHHHHhhccCcchHHHHHHHHHHHHHhcC-------CCCCChhhH--HHHHHHHhhCCcCchHHHHHHHHHHHHHHHHH
Q 004187 97 RFIRKVYEKKGTEGQEETRKAFDFMLSHVG-------SDISSGPIW--LEYITFLKSLPALNAQEESQRMIAIRKAYQRA 167 (770)
Q Consensus 97 ~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig-------~dp~s~~lW--~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqra 167 (770)
+.+.+.-. .+++..++|.+.+. .-+....+. ..|..- ...+....++.....+....|++|
T Consensus 401 klc~e~l~--------~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~--A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 401 KLCIERLK--------LVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQ--ARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred HHHHhchh--------hhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhH--hhcCCChHHHHHHHHHHHHHHHHH
Confidence 55544321 22333333222221 000000111 111111 011122233344456677777777
Q ss_pred Hcc-ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHH
Q 004187 168 VVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKR 246 (770)
Q Consensus 168 l~~-P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~ 246 (770)
++. |.+. ..+| |..++... +.+...|....++ . +.+.+.. +...|.-
T Consensus 471 v~~d~~dp-~~if--~lalq~A~------------~R~l~sAl~~~~e------a-----L~l~~~~------~~~~whL 518 (799)
T KOG4162|consen 471 VQFDPTDP-LVIF--YLALQYAE------------QRQLTSALDYARE------A-----LALNRGD------SAKAWHL 518 (799)
T ss_pred HhcCCCCc-hHHH--HHHHHHHH------------HHhHHHHHHHHHH------H-----HHhcCCc------cHHHHHH
Confidence 776 4333 2333 12111111 1122222222221 0 1111111 1124433
Q ss_pred HHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH----
Q 004187 247 LLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAF---- 322 (770)
Q Consensus 247 yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~---- 322 (770)
+.-.-... ..++.+..+.+.++...++|......-+.+....++.++|++++...+...-+-..+-...
T Consensus 519 LALvlSa~-------kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~ 591 (799)
T KOG4162|consen 519 LALVLSAQ-------KRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGK 591 (799)
T ss_pred HHHHHhhh-------hhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhh
Confidence 32211110 1223344455566666666555555555555555666666665555544321110000000
Q ss_pred -----HHHHHHhCcHHHHHHHHHHHhcc---------------------CCC----CcHHHHHHHHHHHHHhcCHHHHHH
Q 004187 323 -----AELEESRGAIAAAKKLYESLLTD---------------------SVN----TTALAHIQFIRFLRRTEGVEAARK 372 (770)
Q Consensus 323 -----a~~~~~~g~~e~A~~iye~al~~---------------------~p~----~~~~~w~~~~~~~~r~~~~e~A~~ 372 (770)
+.+....++..++.+.+.++... .+. ....+|...+....+.++.++|+.
T Consensus 592 ~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~ 671 (799)
T KOG4162|consen 592 LLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS 671 (799)
T ss_pred hhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 01111112222233333332211 000 013588888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHH--HHHHHHHhCC
Q 004187 373 YFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIR--ALFERALSSL 450 (770)
Q Consensus 373 ~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar--~lferaL~~~ 450 (770)
++.+|-+..+....+|...+.+.... |..++|.+.|..++..+|+.+......+.++.+.|+...|- .++..|++..
T Consensus 672 CL~Ea~~~~~l~~~~~~~~G~~~~~~-~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 672 CLLEASKIDPLSASVYYLRGLLLEVK-GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHHhcchhhHHHHHHhhHHHHHH-HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 99999998888888888888876664 99999999999999999999999999999999999775554 4999999998
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 451 PPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 451 p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
| .+.+.|+.....-...||.+.+-.++.-+.+.-+
T Consensus 751 p--~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 751 P--LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred C--CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 8 7889999999999999999999998888887655
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=4.3e-10 Score=123.31 Aligned_cols=215 Identities=15% Similarity=0.126 Sum_probs=138.3
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
.-.++.+||.+++.+|.+.++|..++.....+++-..|+..++|+++..|++..+...+|..|...|.-..|..++.+=|
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999888888888888776
Q ss_pred ccCCCCcHHHHHHHHHHHHH---------hcCHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004187 344 TDSVNTTALAHIQFIRFLRR---------TEGVEAARKYFLDARKSPN--FTYHVYVAYALMAFCQDKDPKLAHNVFEAG 412 (770)
Q Consensus 344 ~~~p~~~~~~w~~~~~~~~r---------~~~~e~A~~~f~~Al~~~~--~~~~~yi~~a~le~~~~g~~~~A~~ife~a 412 (770)
...|. ..|+..+.-..+ ...+....++|-.|....+ .+++++..++.+.+- .|++++|..+|+.+
T Consensus 381 ~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l-s~efdraiDcf~~A 456 (579)
T KOG1125|consen 381 RNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL-SGEFDRAVDCFEAA 456 (579)
T ss_pred HhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc-chHHHHHHHHHHHH
Confidence 65442 111111100000 0011223333333332222 345566665555333 46666666666666
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004187 413 LKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484 (770)
Q Consensus 413 lk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~ 484 (770)
|...|++..+|..++--+..-.+.++|...|.|||+.-| ..+.+|+.++.=....|.+..+.+.+=.++.
T Consensus 457 L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP--~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 457 LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP--GYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC--CeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666666666666666666555566666666666666655 4445555554444445555555444444443
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=8.7e-09 Score=108.52 Aligned_cols=203 Identities=14% Similarity=0.040 Sum_probs=168.0
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
.++|++.+-++|+..++.+.++++..+.++...++.++|.-.|..|+..-|-....+-.+...|...|.+.+|.-.-..+
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 35677788899999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred hccCCCCcHHHHHHHH-HHH-HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 343 LTDSVNTTALAHIQFI-RFL-RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 343 l~~~p~~~~~~w~~~~-~~~-~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
++..+. ++.....++ ... ..--.-++|.++++++++..|....+-+..|.+.... |..+.+++++++.++.++|+
T Consensus 395 ~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~E-g~~~D~i~LLe~~L~~~~D~- 471 (564)
T KOG1174|consen 395 IRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVE-GPTKDIIKLLEKHLIIFPDV- 471 (564)
T ss_pred HHHhhc-chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhh-CccchHHHHHHHHHhhcccc-
Confidence 776665 444443332 111 1123358899999999999999888888899987775 99999999999999999886
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcC
Q 004187 421 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 421 ~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~G 470 (770)
.++...++++.-.+.+.+|...|..||+..| ++.....-+-.+|....
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP--~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDP--KSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHhccC
Confidence 7888999999999999999999999999999 44454555555554443
No 77
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=2.8e-08 Score=102.48 Aligned_cols=323 Identities=13% Similarity=0.029 Sum_probs=221.7
Q ss_pred CCCCCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh-HHHHHH
Q 004187 18 ADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQV-PLWRCY 95 (770)
Q Consensus 18 ~~P~d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~-~lW~~y 95 (770)
.+|-+++-...|...+ -.+++..|..-|..+++.+|+++......+..++..|.-..|..=|.|.|...|+. ..-+.-
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 5777788888887744 44688889889999999999998888888888888888888888888888887763 222222
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-cccc
Q 004187 96 IRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHH 174 (770)
Q Consensus 96 ~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~ 174 (770)
.....+ +++++.|..-|...|.. |.++
T Consensus 113 g~vllK----------------------------------------------------~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 113 GVVLLK----------------------------------------------------QGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred chhhhh----------------------------------------------------cccHHHHHHHHHHHHhcCCCcc
Confidence 222222 23444455555555544 3322
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcC
Q 004187 175 VEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGN 254 (770)
Q Consensus 175 ~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n 254 (770)
... ..+.+.+ +++ +++.+-..++.+.-
T Consensus 141 ~~~--eaqskl~----------~~~---------------------------------------e~~~l~~ql~s~~~-- 167 (504)
T KOG0624|consen 141 LVL--EAQSKLA----------LIQ---------------------------------------EHWVLVQQLKSASG-- 167 (504)
T ss_pred hhH--HHHHHHH----------hHH---------------------------------------HHHHHHHHHHHHhc--
Confidence 100 0000000 000 00001111111111
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHH
Q 004187 255 PQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAA 334 (770)
Q Consensus 255 ~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~ 334 (770)
.+....++....+.|+..|.+..++..-+.+++..|++..|+.-+..+-+...+|.+..+....++...|+.+.
T Consensus 168 ------~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 168 ------SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred ------CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence 02233456677888899999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHhccCCCCc--HHHHH---------HHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCC
Q 004187 335 AKKLYESLLTDSVNTT--ALAHI---------QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMA---FCQDK 400 (770)
Q Consensus 335 A~~iye~al~~~p~~~--~~~w~---------~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le---~~~~g 400 (770)
+......+|+.+|+.. -..|- .-+.-.++.+++.++....++.++..+....+-++.-.+. +...+
T Consensus 242 sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 242 SLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred HHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 9999999999988731 11111 1123334566777788888888887765333333322221 22247
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 401 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 401 ~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
++-+|+.....+|...|++..++...++.++--..++.|..-|+.|++..+
T Consensus 322 ~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 888999999999999999999999999999888899999999999998776
No 78
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.18 E-value=2.9e-10 Score=120.66 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004187 318 LRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR-TEGVEAARKYFLDARKSPNFTYHVYVAYALMAF 396 (770)
Q Consensus 318 lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r-~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~ 396 (770)
+|+.|+.+..+.+.++.||.+|++|++.... ...+|+.++.++.+ .++.+.|+.+|+++++.-+....+|+.++.++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3444444444444445555555555433222 23445555544444 233333555555555444444444444444444
Q ss_pred hcCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004187 397 CQDKDPKLAHNVFEAGLKRFMHE---PAYILEYADFLSRLNDDRNIRALFERALSSLPP 452 (770)
Q Consensus 397 ~~~g~~~~A~~ife~alk~~p~~---~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~ 452 (770)
.. ++.+.||.+||+++...+.. ..+|..|++|+.+.|+.+.++.+++|+.+.+|.
T Consensus 82 ~~-~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 82 KL-NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HT-T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred Hh-CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 43 45555555555555554443 478999999999999999999999999998884
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.17 E-value=2.3e-09 Score=110.78 Aligned_cols=192 Identities=16% Similarity=0.016 Sum_probs=133.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc--HH
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE---MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT--AL 352 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~---~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~--~~ 352 (770)
.....+.++..+..+...|++++|+..|++++...|++. ..|+.+|.++...|++++|...|+++++..|+.. ..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345678899999999999999999999999999999875 5778999999999999999999999999988632 23
Q ss_pred HHHHHHHHHHHh--------cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 004187 353 AHIQFIRFLRRT--------EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424 (770)
Q Consensus 353 ~w~~~~~~~~r~--------~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l 424 (770)
+|+..+..+... ++.+.|+..|+++++..+.....+.....+... ... ......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~-----~~~-------------~~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL-----RNR-------------LAGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH-----HHH-------------HHHHHH
Confidence 566666665543 677888888888887766544333222111000 000 011123
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 425 EYADFLSRLNDDRNIRALFERALSSLPPE-ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 425 ~ya~~l~~~g~~~~Ar~lferaL~~~p~~-~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..++++...|++.+|...|++++..+|.. .....|...+......|+.+.+.+.+++....+|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45566667777777777777777766521 2356666666666677777777776666666554
No 80
>PLN02789 farnesyltranstransferase
Probab=99.15 E-value=3.6e-09 Score=113.75 Aligned_cols=182 Identities=7% Similarity=-0.042 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-cHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG-AIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g-~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
++|--+-.++...++.++|+..++++|..+|++..+|...+.++..++ +++++...++++++.+|. +..+|.......
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 333333334455678899999999999999999999999999999888 679999999999999998 788999888777
Q ss_pred HHhcCH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc---CCh
Q 004187 362 RRTEGV--EAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL---NDD 436 (770)
Q Consensus 362 ~r~~~~--e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~---g~~ 436 (770)
.+.+.. +++..+++++++.++.+.++|...+.+.... |+++++.+.++++|+.++.+..+|......+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL-GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 776653 7789999999999999999999999987775 9999999999999999999999998887666654 333
Q ss_pred ----hHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Q 004187 437 ----RNIRALFERALSSLPPEESIEVWKRFTQFEQM 468 (770)
Q Consensus 437 ----~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~ 468 (770)
+++.....++|...| ++...|.....+...
T Consensus 196 ~~~~e~el~y~~~aI~~~P--~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 196 EAMRDSELKYTIDAILANP--RNESPWRYLRGLFKD 229 (320)
T ss_pred cccHHHHHHHHHHHHHhCC--CCcCHHHHHHHHHhc
Confidence 467788889999999 667788766666544
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.13 E-value=4.2e-09 Score=123.76 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=128.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRAL---KALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi---~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
..+.-+++...+....+...+-+++ ...|.+.+.++.+|.+..+.|.+++|..+++++++..|+ ...+++.++..+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L 130 (694)
T PRK15179 52 LQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGV 130 (694)
T ss_pred HHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHH
Confidence 3344444555555444444444443 447888888888888888888888888888888888887 778888888888
Q ss_pred HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHH
Q 004187 362 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRA 441 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~ 441 (770)
.+.+++++|+..+++++...+.+...+...|.++... |++++|..+|++++..+|+.+..|+.++..+...|+.++|..
T Consensus 131 ~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~-g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI-GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888888888888888887777665 888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCC
Q 004187 442 LFERALSSLP 451 (770)
Q Consensus 442 lferaL~~~p 451 (770)
.|++|+....
T Consensus 210 ~~~~a~~~~~ 219 (694)
T PRK15179 210 VLQAGLDAIG 219 (694)
T ss_pred HHHHHHHhhC
Confidence 8888887654
No 82
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.11 E-value=1.6e-09 Score=103.13 Aligned_cols=122 Identities=17% Similarity=-0.045 Sum_probs=104.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 269 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 269 ~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
.+|++++..+|++ |+..+..+...|++++|...|++++...|++..+|+.+|.++...|++++|...|++++..+|.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4788899888765 6778888899999999999999999999999999999999999999999999999999998887
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004187 349 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 394 (770)
Q Consensus 349 ~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~l 394 (770)
...+|+.++..+.+.|++++|+..|.++++..+.....|...+..
T Consensus 91 -~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 91 -HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 678888888888888888888888888888877777766665544
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.6e-07 Score=99.97 Aligned_cols=399 Identities=13% Similarity=0.041 Sum_probs=245.0
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHhhccCcch
Q 004187 32 SALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYIRFIRKVYEKKGTEG 110 (770)
Q Consensus 32 ~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~-~~lW~~y~~~~~~~~~~~~~~~ 110 (770)
.+..++++.|...|-.++.+.|.+.-++-.....+.+.++|++|.+=-.++...+|+ .+-|...+.-..-.+ .
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg------~ 85 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG------D 85 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc------c
Confidence 345678999999999999999999999999999999999999999999999999995 566666666555544 4
Q ss_pred HHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhh
Q 004187 111 QEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVS 190 (770)
Q Consensus 111 ~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y~~fe~~~~ 190 (770)
++++...|..+|.+ ||.+..+.....+.... .++..+.++. -.++.+....|..+...--..|......+.
T Consensus 86 ~~eA~~ay~~GL~~---d~~n~~L~~gl~~a~~~-----~~~~~~~~~~-p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 86 YEEAILAYSEGLEK---DPSNKQLKTGLAQAYLE-----DYAADQLFTK-PYFHEKLANLPLTNYSLSDPAYVKILEIIQ 156 (539)
T ss_pred HHHHHHHHHHHhhc---CCchHHHHHhHHHhhhH-----HHHhhhhccC-cHHHHHhhcChhhhhhhccHHHHHHHHHhh
Confidence 78999999999886 77666666555444310 0000000000 011111111122111000011221111110
Q ss_pred H--hHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHhhhhccCCCCC-------CChhhHHHHHHHHHHHHH-HH--cCC
Q 004187 191 R--QLAKGLLSEYQSKYTSARAVYRERKK---YCEEIDWNMLAVPPT-------GSYKEEQQWIAWKRLLTF-EK--GNP 255 (770)
Q Consensus 191 ~--~la~~ll~e~~~~y~~A~~v~k~~~~---~~~~L~~~~~~v~p~-------~~~~~~~~~~lw~~yi~~-ek--~n~ 255 (770)
+ .-.+..+. .+..+++.-+...... +...+.-......|. ....+..+..- .+.... ++ +|.
T Consensus 157 ~~p~~l~~~l~--d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~-~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 157 KNPTSLKLYLN--DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR-VKEKAHKEKELGNA 233 (539)
T ss_pred cCcHhhhcccc--cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH-HHHhhhHHHHHHHH
Confidence 0 00000000 1223333322211000 000000000000010 00001111000 111110 11 110
Q ss_pred CCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-------HHHHHHHH
Q 004187 256 QRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRY-------AFAELEES 328 (770)
Q Consensus 256 ~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~-------~~a~~~~~ 328 (770)
. -....+..++..|..++..+ ....-....+..+...|.+.+.+...+.+++..-....-.. ..+..+..
T Consensus 234 a--ykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 234 A--YKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred H--HHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 0 00123455667888899888 77777888888899999999988888888876543322111 23445566
Q ss_pred hCcHHHHHHHHHHHhccCCCC-------------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC
Q 004187 329 RGAIAAAKKLYESLLTDSVNT-------------------------TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF 383 (770)
Q Consensus 329 ~g~~e~A~~iye~al~~~p~~-------------------------~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~ 383 (770)
.++++.++..|++++...-.. ...--..-++-..+.|++..|...|.+||+..|.
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 788899999999988653320 0111112244555678899999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004187 384 TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPP 452 (770)
Q Consensus 384 ~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~ 452 (770)
+...|.+.|..+..+ +.+..|.+-.+++++.+|+....|+.-+..+..+.++++|...|+.+++..|.
T Consensus 391 Da~lYsNRAac~~kL-~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 391 DARLYSNRAACYLKL-GEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred hhHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 999999999998887 99999999999999999999999999999999999999999999999999883
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=3.6e-08 Score=101.36 Aligned_cols=219 Identities=17% Similarity=0.126 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhCcHHHHHHHH
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS-----EMLRYAFAELEESRGAIAAAKKLY 339 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s-----~~lw~~~a~~~~~~g~~e~A~~iy 339 (770)
++++..|-..++.+|...++.+.++.++.+.|..+.|+.+.+..+.. |+. ..+.+.+|.=|...|=+|+|.++|
T Consensus 52 dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 52 DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 56788999999999999999999999999999999999999877764 433 234567788888889999999999
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004187 340 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT-----YHVYVAYALMAFCQDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 340 e~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~-----~~~yi~~a~le~~~~g~~~~A~~ife~alk 414 (770)
..+...... -..+.-++...+....++++|+++-++..+..+.. .+.|..+|.-... ..+.+.|+..++++++
T Consensus 131 ~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-~~~~d~A~~~l~kAlq 208 (389)
T COG2956 131 NQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-SSDVDRARELLKKALQ 208 (389)
T ss_pred HHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHh
Confidence 998876554 46788888999999999999999999988876553 4456666655433 4899999999999999
Q ss_pred hCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 415 RFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 415 ~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.+|++...-+..++++...|+++.|...++++++..| +--.++...+..-....|.++.....++|+.+.++
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~-~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP-EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999887 44466777777777788999999999999999887
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=4.6e-09 Score=115.39 Aligned_cols=198 Identities=12% Similarity=0.030 Sum_probs=162.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc
Q 004187 286 YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE 365 (770)
Q Consensus 286 ~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~ 365 (770)
+.-+.-+++.|++.+|.-.||-|++.+|++.+.|..++.....+++-..|+..+++|++.+|+ +..+...++-.+...+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh
Confidence 455778889999999999999999999999999999999999999989999999999999998 8899999999999888
Q ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhcCC
Q 004187 366 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ--------DKDPKLAHNVFEAGLKRFM--HEPAYILEYADFLSRLND 435 (770)
Q Consensus 366 ~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~--------~g~~~~A~~ife~alk~~p--~~~~~~l~ya~~l~~~g~ 435 (770)
.-..|..++.+=+...+. .+|+..+...-.. ........++|-.+....| .++++...++-++...++
T Consensus 368 ~q~~Al~~L~~Wi~~~p~--y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPK--YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCcc--chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888999999887765543 2233222111000 0112344566666666677 689999999999999999
Q ss_pred hhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 004187 436 DRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 488 (770)
Q Consensus 436 ~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~ 488 (770)
+++|..+|+.||...| .+..+|+++..-...-.....+...++|+++..|.
T Consensus 446 fdraiDcf~~AL~v~P--nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKP--NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 9999999999999999 88999999998776656778999999999999983
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.09 E-value=2.5e-09 Score=101.85 Aligned_cols=125 Identities=14% Similarity=0.070 Sum_probs=111.0
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC
Q 004187 302 IKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP 381 (770)
Q Consensus 302 ~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~ 381 (770)
...|+++++..|++ ++.++..+.+.|++++|...|++++...|. ...+|+.++..+.+.|++++|...|++++...
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 35899999999986 556788888999999999999999999998 78999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 382 NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 431 (770)
Q Consensus 382 ~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~ 431 (770)
+.....+..++.++... |+.++|++.|+++++..|+++..|...+....
T Consensus 89 p~~~~a~~~lg~~l~~~-g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMM-GEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 88899999999987775 99999999999999999999998876665543
No 87
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=2.3e-07 Score=95.55 Aligned_cols=201 Identities=13% Similarity=0.065 Sum_probs=141.9
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHhCcHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEM-----LRYAFAELEESRGAIAAAKK 337 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~-----lw~~~a~~~~~~g~~e~A~~ 337 (770)
.++|+..+|.+.....-.-+.+...+..+|....++++|+++-++.++..++... ++..+|.-+....+.++|+.
T Consensus 122 l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4445555555555444444566667778888888888899888888888776533 34455555556678888888
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 004187 338 LYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 417 (770)
Q Consensus 338 iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p 417 (770)
.++++++.+|. ...+-+.+++.+...|++++|.+.++++++.++.....-+..-..-|...|+.++....+.++.+.++
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 99999988887 67788888888888899999999998888877654333333222224445889988888888888876
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Q 004187 418 HEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM 468 (770)
Q Consensus 418 ~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~ 468 (770)
.. ++.+..+++...+.-.+.|...+.+-|...| +...+.+++.++..
T Consensus 281 g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P---t~~gf~rl~~~~l~ 327 (389)
T COG2956 281 GA-DAELMLADLIELQEGIDAAQAYLTRQLRRKP---TMRGFHRLMDYHLA 327 (389)
T ss_pred Cc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCC---cHHHHHHHHHhhhc
Confidence 53 4455566666667777888888888888777 24556666666543
No 88
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=4.2e-08 Score=97.91 Aligned_cols=167 Identities=23% Similarity=0.209 Sum_probs=144.7
Q ss_pred HHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHH
Q 004187 283 DIWYDYATW---NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIR 359 (770)
Q Consensus 283 ~~w~~~a~~---l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~ 359 (770)
+.|.-|-++ ..-.|+.+-|..++.+.-..+|+|..+--..|.+++..|++++|.++|++.++.+|. +.-++..-.-
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlA 128 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLA 128 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHH
Confidence 444444333 345688899999999999999999999889999999999999999999999999987 5566766666
Q ss_pred HHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC---Ch
Q 004187 360 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN---DD 436 (770)
Q Consensus 360 ~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g---~~ 436 (770)
....+|..-+|++-+..-++.-..+.++|..++.|.... |++++|.-+||.++-..|.++-++..|++.+.-+| +.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE-GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 677788888999988888888888899999999998776 99999999999999999999999999999999887 56
Q ss_pred hHHHHHHHHHHhCCC
Q 004187 437 RNIRALFERALSSLP 451 (770)
Q Consensus 437 ~~Ar~lferaL~~~p 451 (770)
+-+|.+|+++|+..|
T Consensus 208 ~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 208 ELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHhCh
Confidence 779999999999988
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=2.1e-08 Score=110.20 Aligned_cols=205 Identities=14% Similarity=-0.046 Sum_probs=142.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHH
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAH 354 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w 354 (770)
+|+++..|..++.++...++.+.+.+.+.++....|.+ .+.++..+..+...|++++|.+++++++...|. ...++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHH
Confidence 57777888888888888888888888888888776644 445566677777788888888888888888776 44444
Q ss_pred HH---HHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 355 IQ---FIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 431 (770)
Q Consensus 355 ~~---~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~ 431 (770)
.. +.......+....+.+.+.......+.....+...+.++... |++++|...++++++..|+++.++..++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEA-GQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 41 111112234445555555543344444455555556665554 88888888888888888888888888888888
Q ss_pred hcCChhHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004187 432 RLNDDRNIRALFERALSSLPP--EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484 (770)
Q Consensus 432 ~~g~~~~Ar~lferaL~~~p~--~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~ 484 (770)
..|++++|..++++++...|. ......|..++.+....|+.+.+..+++++..
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888888876552 22234566777777788888888888877643
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=6.3e-10 Score=113.79 Aligned_cols=187 Identities=16% Similarity=0.105 Sum_probs=165.6
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
...+++.+|.+.+..+|.+.......|++++..++.++|.++|.++++..|.+.+..--.|.-|.-.++.+-|...|.++
T Consensus 271 QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 35688889999999999999999999999999999999999999999999999775433333333457889999999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc
Q 004187 343 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS---PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 419 (770)
Q Consensus 343 l~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~---~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~ 419 (770)
|+..-. ..++++.++..+.-.++++-+...|++|+.. +....++|.+++.+.... ||+.-|..+|+.++..+++.
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i-GD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI-GDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec-cchHHHHHHHHHHhccCcch
Confidence 998776 6889999998888889999999999999863 445689999999887665 99999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 420 PAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 420 ~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
.+.+.+.+-+..+.|+.+.||.++..|-+..|
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 99999999999999999999999999999888
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.06 E-value=8.9e-09 Score=121.07 Aligned_cols=143 Identities=15% Similarity=0.050 Sum_probs=132.8
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHH
Q 004187 276 MYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355 (770)
Q Consensus 276 ~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~ 355 (770)
...|++.++++.+|.+..+.|++++|..+++++++..|++..++..++..+.+.+++++|...+++++...|+ +..+.+
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 356 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 356 ~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
.++..+...|.+++|..+|++++...+...++++.+|..+... |+.++|...|+++++.+.+-.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR-GALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhCcch
Confidence 9999999999999999999999987777899999999987775 999999999999999876643
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.04 E-value=3.1e-07 Score=106.08 Aligned_cols=442 Identities=12% Similarity=0.079 Sum_probs=260.8
Q ss_pred hhccccCCCCCHHHHHHHHHHhcCC-ChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC---
Q 004187 12 ENITGVADKYNVETAEILANSALHL-PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL--- 87 (770)
Q Consensus 12 ~~i~~~~~P~d~~aw~~l~~~~~~~-~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p--- 87 (770)
++++ .+|.-.-+|.-|...+..- +..+|+++|.++.+.+|++...|...++.+....+.+.|..+.-++-+..|
T Consensus 483 ~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 483 RALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 4566 8888899999988877653 778899999999999999999999999999999999999999666666655
Q ss_pred ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHH
Q 004187 88 QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRA 167 (770)
Q Consensus 88 ~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqra 167 (770)
...-|....-+..+-++ ...+..-|+-+|+ .+|.+...|....+. |.+.+++..|.++|.+|
T Consensus 561 ~k~nW~~rG~yyLea~n------~h~aV~~fQsALR---~dPkD~n~W~gLGeA---------Y~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHN------LHGAVCEFQSALR---TDPKDYNLWLGLGEA---------YPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHhhhhhccccccCccc------hhhHHHHHHHHhc---CCchhHHHHHHHHHH---------HHhcCceehHHHhhhhh
Confidence 34567665544444332 3455566666666 489889999998876 55689999999999999
Q ss_pred Hcc-ccccHHHHHHHHHH-----HHHHhhHhHHHHHHHHH----hHHHHHHHHHHHHHHH-HHHHhhhhccCCCCCCChh
Q 004187 168 VVT-PTHHVEQLWKDYEN-----FENSVSRQLAKGLLSEY----QSKYTSARAVYRERKK-YCEEIDWNMLAVPPTGSYK 236 (770)
Q Consensus 168 l~~-P~~~~~~l~~~y~~-----fe~~~~~~la~~ll~e~----~~~y~~A~~v~k~~~~-~~~~L~~~~~~v~p~~~~~ 236 (770)
... |.+-....+..-.. ++..+ .+...++.++ .....-+..+.+.... +.+.+.. .+....
T Consensus 623 s~LrP~s~y~~fk~A~~ecd~GkYkeal--d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~-----kavd~~- 694 (1238)
T KOG1127|consen 623 SLLRPLSKYGRFKEAVMECDNGKYKEAL--DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQK-----KAVDFF- 694 (1238)
T ss_pred HhcCcHhHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh-----hhhHHH-
Confidence 987 77543333221111 10000 0001111111 0011111111111110 1111110 011000
Q ss_pred hHHHHHHHHHHH---------HHHH-cCCCCC----CcchhhhHHHHHHHHHHH----------------------HcCC
Q 004187 237 EEQQWIAWKRLL---------TFEK-GNPQRI----DTASSNKRIIFTYEQCLM----------------------YLYH 280 (770)
Q Consensus 237 ~~~~~~lw~~yi---------~~ek-~n~~~l----d~~~~~~r~~~~ye~aL~----------------------~~p~ 280 (770)
+..++....-+ .|+- ++...+ +.......+..++..-+. ....
T Consensus 695 -eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~ 773 (1238)
T KOG1127|consen 695 -EKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI 773 (1238)
T ss_pred -HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh
Confidence 00011111111 1110 000000 000111111112211010 0112
Q ss_pred CHHHHHHHHHHHHH----c----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHH
Q 004187 281 YPDIWYDYATWNAK----S----GSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTAL 352 (770)
Q Consensus 281 ~~~~w~~~a~~l~~----~----g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~ 352 (770)
++.-|++++.-+.+ . .+...|+..+.++|+.+-++..+|..++.+ -..|++.-|.-+|-+.+...|. ...
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~ 851 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHC 851 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chh
Confidence 34567777766654 1 234578999999999999999999999887 4558888888899988888887 788
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHH
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF---MHEPAYILEYADF 429 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~---p~~~~~~l~ya~~ 429 (770)
.|.+++-+.....+++-|...|.+++...|.+...|+..|.+.... |+.-++..+|.-..... ...+.+-+-++..
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eav-G~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAV-GRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHH-HHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 9999999888999999999999999998888888899988887665 88777888887644432 2233333333333
Q ss_pred H--HhcCChh----------HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 430 L--SRLNDDR----------NIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 430 l--~~~g~~~----------~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+ ...|+++ .|--.+++-+...| +....+..-.-.-...+....+.....|.+..+.
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p--~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe 998 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHP--QLCFAYAANGSTLEHLEEYRAALELATRLIGLLE 998 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc--chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3344433 22223444444444 2222222222222244555566666666666555
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.03 E-value=2e-08 Score=100.88 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=83.8
Q ss_pred CcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC--HHHHHH
Q 004187 330 GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD--PKLAHN 407 (770)
Q Consensus 330 g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~--~~~A~~ 407 (770)
++.+++...++++++.+|+ +...|..++..+...|++++|...|+++++..+.+..++..+|.+++...|+ .++|++
T Consensus 53 ~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4445666666666666666 5666777666666667777777777777766666667777776654332354 477777
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCch
Q 004187 408 VFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPE 453 (770)
Q Consensus 408 ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~ 453 (770)
+++++++..|+++..+..++..+...|++++|...|+++++..|++
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7777777777777777777777777777777777777777766643
No 94
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1.9e-06 Score=91.77 Aligned_cols=207 Identities=14% Similarity=0.083 Sum_probs=173.2
Q ss_pred chhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 261 ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 261 ~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
.+.++++...|+.+|..+..-.++.+..+.-+..+|+.++|++.|-+.-...-++..+.+.+|.+|+...+..+|.+.|-
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 35678888999999999888899999999999999999999999999988888999999999999999999999999999
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 341 SLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 341 ~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
++....|+ .+.+...++.++-+.|+-..|.+++-..-.--||+.++.--++..... ..-.++|+..||++--..|+..
T Consensus 583 q~~slip~-dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid-tqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 583 QANSLIPN-DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID-TQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred HhcccCCC-CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh-hHHHHHHHHHHHHHHhcCccHH
Confidence 99999998 688999999999999999999888877777667766553222222222 2457899999999998888876
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCC
Q 004187 421 AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGD 471 (770)
Q Consensus 421 ~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd 471 (770)
.--+.-+.++.+.|++.+|..+|...-..+| ...+-...++.+....|-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfp--edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFP--EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCc--cchHHHHHHHHHhccccc
Confidence 6556667888999999999999999999999 556666666666644443
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.02 E-value=6.8e-09 Score=104.30 Aligned_cols=119 Identities=11% Similarity=0.075 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHhCc--HHHHHHHHH
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELE-ESRGA--IAAAKKLYE 340 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~-~~~g~--~e~A~~iye 340 (770)
.+..+..+++++..+|.+.+.|+.++.++...|++++|...|+++++..|++..++..+|.++ ...|+ .++|+.+++
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~ 134 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID 134 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 355677899999999999999999999999999999999999999999999999999999864 66676 589999999
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC
Q 004187 341 SLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF 383 (770)
Q Consensus 341 ~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~ 383 (770)
++++.+|. ...++..++..+.+.|++++|+..|+++++..+.
T Consensus 135 ~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 135 KALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999998 7889999998888999999999999999876543
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9e-07 Score=96.94 Aligned_cols=176 Identities=14% Similarity=0.036 Sum_probs=140.5
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
.++-++..|+++|...-. .+.+.+....+++....++.--..|.-..--..-+..+.+.|++..|...|.++
T Consensus 313 ~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344455666666654433 334445555667777777776677766555455577777889999999999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHH
Q 004187 343 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 422 (770)
Q Consensus 343 l~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~ 422 (770)
|+.+|+ +..+|.+.+-.+.+.+.+..|..-.+.+++.++.....|+.-+.++... +++++|.+.|+.+++..|++.++
T Consensus 385 Ikr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m-k~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 385 IKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM-KEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhHHH
Confidence 999998 7899999999999999999999999999999999899999999988876 89999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 423 ILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 423 ~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
.-.|.++...+.....--.++++++.
T Consensus 463 ~~~~~rc~~a~~~~~~~ee~~~r~~~ 488 (539)
T KOG0548|consen 463 IDGYRRCVEAQRGDETPEETKRRAMA 488 (539)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHhhcc
Confidence 98888888876555555566777554
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.98 E-value=3e-06 Score=96.60 Aligned_cols=303 Identities=14% Similarity=0.116 Sum_probs=190.7
Q ss_pred cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHH
Q 004187 34 LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQE 112 (770)
Q Consensus 34 ~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e 112 (770)
+.+++++|...++.....-++...+-...++.++++|++++|..+|...+..+| |......|.......... ..++.+
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~-~~~~~~ 94 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL-SDEDVE 94 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc-ccccHH
Confidence 457899999999999999999898888999999999999999999999999999 656555555554222111 123567
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHH-HHHHHHHHHHcc--cc--ccHHHHHHHHHHHHH
Q 004187 113 ETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMI-AIRKAYQRAVVT--PT--HHVEQLWKDYENFEN 187 (770)
Q Consensus 113 ~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~-~ar~vyqral~~--P~--~~~~~l~~~y~~fe~ 187 (770)
....+|+..-.. .|.|..+-.--+.|+. ...+. .+.......+.. |. .++..+|..-.
T Consensus 95 ~~~~~y~~l~~~---yp~s~~~~rl~L~~~~----------g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~---- 157 (517)
T PF12569_consen 95 KLLELYDELAEK---YPRSDAPRRLPLDFLE----------GDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPE---- 157 (517)
T ss_pred HHHHHHHHHHHh---CccccchhHhhcccCC----------HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChh----
Confidence 778888854443 3433322222222221 11222 222333333332 32 11111111000
Q ss_pred HhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHH
Q 004187 188 SVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRI 267 (770)
Q Consensus 188 ~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~ 267 (770)
++..+.. +...|..-...+. ....
T Consensus 158 -------------------K~~~i~~-----------------------------l~~~~~~~l~~~~-~~~~------- 181 (517)
T PF12569_consen 158 -------------------KAAIIES-----------------------------LVEEYVNSLESNG-SFSN------- 181 (517)
T ss_pred -------------------HHHHHHH-----------------------------HHHHHHHhhcccC-CCCC-------
Confidence 0000000 1111111000000 0000
Q ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 004187 268 IFTYEQCLMYLYHYPDIW--YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 268 ~~~ye~aL~~~p~~~~~w--~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~ 345 (770)
.. .....|...-+| +.+|+.+...|++++|++..++||...|+..++++..|.++...|++.+|...++.+-..
T Consensus 182 ---~~-~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 182 ---GD-DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred ---cc-ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 00 001122222345 666899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC---C-HH---HHHH--HHHHHHhcCCCHHHHHHHHHHHHHhC
Q 004187 346 SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF---T-YH---VYVA--YALMAFCQDKDPKLAHNVFEAGLKRF 416 (770)
Q Consensus 346 ~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~---~-~~---~yi~--~a~le~~~~g~~~~A~~ife~alk~~ 416 (770)
+.. +-.+....+.+..|.|.+++|.+++....+.+.. + .+ +|.. .|....+. |++..|.+-|....+.|
T Consensus 258 D~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~-~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 258 DLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ-GDYGLALKRFHAVLKHF 335 (517)
T ss_pred Chh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence 886 4567778889999999999999999888765421 1 11 2322 34444444 88888888888888765
No 98
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.97 E-value=8.8e-08 Score=107.79 Aligned_cols=224 Identities=17% Similarity=0.166 Sum_probs=170.8
Q ss_pred hhhHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMY--------LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA--------LPDSEMLRYAFAELE 326 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~--------~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~--------~P~s~~lw~~~a~~~ 326 (770)
.++.+..++++|+.. ++.-..+...+|.+|...+++.+|..+|++|+.. +|....++..+|.+|
T Consensus 214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly 293 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLY 293 (508)
T ss_pred cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 456677788888876 4444556667999999999999999999999975 344466788999999
Q ss_pred HHhCcHHHHHHHHHHHhccCCC-------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC--------CCCCHHHHHHH
Q 004187 327 ESRGAIAAAKKLYESLLTDSVN-------TTALAHIQFIRFLRRTEGVEAARKYFLDARKS--------PNFTYHVYVAY 391 (770)
Q Consensus 327 ~~~g~~e~A~~iye~al~~~p~-------~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~--------~~~~~~~yi~~ 391 (770)
...|++++|+.++++++++... .........+..+...+.++.|..+++++++. ..+....+.++
T Consensus 294 ~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl 373 (508)
T KOG1840|consen 294 YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL 373 (508)
T ss_pred hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 9999999999999998875321 12345556666777789999999999988752 22457889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhC----CC-c---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---Cch--hHHHH
Q 004187 392 ALMAFCQDKDPKLAHNVFEAGLKRF----MH-E---PAYILEYADFLSRLNDDRNIRALFERALSSL---PPE--ESIEV 458 (770)
Q Consensus 392 a~le~~~~g~~~~A~~ife~alk~~----p~-~---~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~---p~~--~~~~l 458 (770)
|.+.+.. |++++|+++|++++.+. .. . ...+...+.-+.+.+.+.+|-.+|++++... .++ +....
T Consensus 374 ~~l~~~~-gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~ 452 (508)
T KOG1840|consen 374 AELYLKM-GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYT 452 (508)
T ss_pred HHHHHHh-cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 9998885 99999999999999874 11 2 2233455555578888999999999888743 111 34566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 459 WKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 459 w~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+..++......|+++.+.+++.+....-.
T Consensus 453 ~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 453 YLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 77778888899999999998888776554
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=5.7e-07 Score=103.97 Aligned_cols=210 Identities=11% Similarity=0.053 Sum_probs=158.8
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
..++.++.+++..+.++...|..++-+ -..|++--|...|-+++...|.+.-.|++++.+..++.+++-|...|.++..
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 567889999999999999999999977 4457888999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHH--HHcCCCC---CHHHHHHHHHHHHhcCCCHHH----------HHHHH
Q 004187 345 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLD--ARKSPNF---TYHVYVAYALMAFCQDKDPKL----------AHNVF 409 (770)
Q Consensus 345 ~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~--Al~~~~~---~~~~yi~~a~le~~~~g~~~~----------A~~if 409 (770)
..|. +...|+..+.+.+..|++-++..+|.. .+..... ....|+. +.+....+|+++. |--..
T Consensus 879 LdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c-~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 879 LDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC-ATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred cCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH-HHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 9998 788999999999999999999999987 4433222 1223333 3332333455443 22233
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----chhHHHHHHHHHHHHHHcCCHHHHHH
Q 004187 410 EAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP----PEESIEVWKRFTQFEQMYGDLDSTLK 477 (770)
Q Consensus 410 e~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p----~~~~~~lw~~~~~fE~~~Gd~~~~~k 477 (770)
++-+...|+....+..-+..+.+++.+.+|..+..|.+..+. .++...+--.+.+++...|+.+++.+
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 444556777777777777888889999999999999887432 12222244556667777777765544
No 100
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.96 E-value=7.5e-06 Score=93.11 Aligned_cols=366 Identities=12% Similarity=0.018 Sum_probs=228.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHh
Q 004187 46 EQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSH 124 (770)
Q Consensus 46 e~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ 124 (770)
+.-...|-++..+|-.+.-.....|.++.+.+.||+++..+- ..+.|..++--....+. --++..+.+..+..
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~------~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS------DSKAVNLLRESLKK 386 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc------chHHHHHHHhhccc
Confidence 333445678888888888888888999999999999888875 56888887766554432 12455555533322
Q ss_pred cCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHH
Q 004187 125 VGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSK 204 (770)
Q Consensus 125 ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~ 204 (770)
- .+|..........+.+.+ +.+..+++...-++++..-.. +..
T Consensus 387 ~-~~ps~~s~~Lmasklc~e--------~l~~~eegldYA~kai~~~~~----------------------------~~~ 429 (799)
T KOG4162|consen 387 S-EQPSDISVLLMASKLCIE--------RLKLVEEGLDYAQKAISLLGG----------------------------QRS 429 (799)
T ss_pred c-cCCCcchHHHHHHHHHHh--------chhhhhhHHHHHHHHHHHhhh----------------------------hhh
Confidence 1 114333333332222211 122333333333333321000 000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHH
Q 004187 205 YTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDI 284 (770)
Q Consensus 205 y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~ 284 (770)
+ .+-+.....+|. |-......+....+....++.+..+++|++.+|+++.+
T Consensus 430 ~------l~~~~~l~lGi~-----------------------y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 430 H------LKPRGYLFLGIA-----------------------YGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred h------hhhhHHHHHHHH-----------------------HHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 0 000000000110 00000000011111223455678999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRALKALP-DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 363 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi~~~P-~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r 363 (770)
-+.++..+..+++++.|.+...++++.++ ++...|..+|.+.-..+++..|..+.+.++...++ +...-...+..+..
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhhhhh
Confidence 99999999999999999999999999955 67889999999999999999999999999877654 11111111111111
Q ss_pred hcCHHH-------------------------------------------HHHHHHHHHc--------------CC-----
Q 004187 364 TEGVEA-------------------------------------------ARKYFLDARK--------------SP----- 381 (770)
Q Consensus 364 ~~~~e~-------------------------------------------A~~~f~~Al~--------------~~----- 381 (770)
.++.++ |.+.+.++.. .+
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 122222 2222222110 00
Q ss_pred --CC-----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchh
Q 004187 382 --NF-----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE 454 (770)
Q Consensus 382 --~~-----~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~ 454 (770)
+. ....|...+.. +...++.+.|..++..+-+.+|-.+.+|+.-++.+...|..++|.+.|..|+...| +
T Consensus 640 ~~~~~~~~~~~~lwllaa~~-~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP--~ 716 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADL-FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP--D 716 (799)
T ss_pred CCCCchHHHHHHHHHHHHHH-HHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC--C
Confidence 10 12345555544 33458889999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhcc
Q 004187 455 SIEVWKRFTQFEQMYGDLDSTLK--VEQRRKEALS 487 (770)
Q Consensus 455 ~~~lw~~~~~fE~~~Gd~~~~~k--~~~R~~~~~~ 487 (770)
++.+.-..+......|+...+.+ +++-+.+..|
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 88888888888888998766665 6666666666
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.95 E-value=6.5e-08 Score=99.97 Aligned_cols=157 Identities=13% Similarity=0.008 Sum_probs=114.0
Q ss_pred CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHH---H
Q 004187 313 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYH---V 387 (770)
Q Consensus 313 P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~--~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~---~ 387 (770)
+.....++..|..+...|++++|...|++++...|... ..+|+.++..+...+++++|+..|+++++..+.... +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44577889999999999999999999999999888632 368899999999999999999999999987665443 4
Q ss_pred HHHHHHHHHhc-------CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHH
Q 004187 388 YVAYALMAFCQ-------DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWK 460 (770)
Q Consensus 388 yi~~a~le~~~-------~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~ 460 (770)
+...+.+.+.. .|+.+.|.+.|+++++.+|++...+..+.......+. + .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~-----------~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR-----------L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH-----------H--------HHHHH
Confidence 55666654432 2678899999999999999987665433322111100 0 01122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 004187 461 RFTQFEQMYGDLDSTLKVEQRRKEALSR 488 (770)
Q Consensus 461 ~~~~fE~~~Gd~~~~~k~~~R~~~~~~~ 488 (770)
..+.+....|+...+...++++.+.+|.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~ 198 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPD 198 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCC
Confidence 3444556778888888888888888773
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.95 E-value=6.6e-08 Score=99.82 Aligned_cols=201 Identities=14% Similarity=0.054 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 363 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r 363 (770)
-.+.++.-+...|++..|+..|..|+..+|++-...+..|..|...|.-..|..-+.+.|+..|+ +.-+.++.+..+..
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD-F~~ARiQRg~vllK 118 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD-FMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc-HHHHHHHhchhhhh
Confidence 34444444555555555555555555555555555555555555555544555555555555554 44455555555555
Q ss_pred hcCHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH-----------HhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 364 TEGVEAARKYFLDARKSPNF---TYHVYVAYALMA-----------FCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 429 (770)
Q Consensus 364 ~~~~e~A~~~f~~Al~~~~~---~~~~yi~~a~le-----------~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~ 429 (770)
+|.++.|..-|+..++..+. ..+++-.++.+. +..+||...|++.....|+..|.++.++...+.+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 55555555555555544332 112222222111 1123555555555555555555555555555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 430 LSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 430 l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+...|++..|..=+..+-+.-. ++.+..+....+++..||....++..+..++..|
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~--DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp 254 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQ--DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP 254 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccc--cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc
Confidence 5555555555555554444322 4455555555555555555555555555555554
No 103
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.8e-07 Score=97.37 Aligned_cols=257 Identities=14% Similarity=0.074 Sum_probs=162.0
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
+.++..|+++...+|......-.||.++.+.|+++...++-.+.+........-|+--+......+++.+|..+-++++.
T Consensus 249 ~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 249 FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID 328 (564)
T ss_pred hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 34445555555555555555555555555555555555555555555544555565555555566677777777788888
Q ss_pred cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 004187 345 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424 (770)
Q Consensus 345 ~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l 424 (770)
.++. ...+++.-++.++..++.++|.-.|..|+...|+....|-.+...+.. .|.+.+|..+-..+++.+|.++..+.
T Consensus 329 ~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA-~~~~kEA~~~An~~~~~~~~sA~~Lt 406 (564)
T KOG1174|consen 329 SEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA-QKRFKEANALANWTIRLFQNSARSLT 406 (564)
T ss_pred cCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHhhcchhhhh
Confidence 7777 677888888888888888888888888888887777777666554444 37777777777777777777776655
Q ss_pred HHH-HHHHhc-CChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccc-------
Q 004187 425 EYA-DFLSRL-NDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGAS------- 495 (770)
Q Consensus 425 ~ya-~~l~~~-g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~~e~~~~------- 495 (770)
..+ ..+..- ..-++|...+|++|+..| .-.......+++...-|....+.++++|....++ ++..+
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P--~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~---D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKINP--IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP---DVNLHNHLGDIM 481 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhccCC--ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc---ccHHHHHHHHHH
Confidence 442 333222 234778888888888877 4334344445555555666667888888888777 22100
Q ss_pred hhhhhHHhhhhhccc-CCCCCCChhhhhhHHHHH
Q 004187 496 ALEDSLQDVVSRYSF-MDLWPCSSKDLDHLVRQE 528 (770)
Q Consensus 496 ~~e~ll~~~~~Ry~~-ldlw~~~~~~l~~l~~~~ 528 (770)
.--+..+.-.+.|.. +-+-|.+...++-|..-|
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 011222333445444 467777777666665433
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=5.2e-08 Score=91.31 Aligned_cols=113 Identities=17% Similarity=-0.007 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
.|++++...|.+..+.+.++..+...|++++|...|++++..+|++..+|+.++.++...|++++|..+|++++...|.
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~- 83 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD- 83 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 5677777777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF 383 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~ 383 (770)
...+|..++..+...|+++.|...|+++++..+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5666777777666677777777777777665544
No 105
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=5.7e-08 Score=91.06 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=100.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC
Q 004187 303 KVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 303 ~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~ 382 (770)
..|++++...|++....+.++.++...|++++|...|++++...|. ...+|..++.++...++++.|..+|+++++..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4678888888888888888888888889999999999998888887 678888888888888888888888888888877
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHH
Q 004187 383 FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI 423 (770)
Q Consensus 383 ~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~ 423 (770)
.....+...|.+.... |+.+.|.+.|+++++..|++..++
T Consensus 83 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLAL-GEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccccchHH
Confidence 7788888888876664 888888888888888888876644
No 106
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=4.5e-07 Score=90.67 Aligned_cols=157 Identities=15% Similarity=0.082 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 004187 267 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 346 (770)
Q Consensus 267 ~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~ 346 (770)
+..++++....+|.+..+-...|.+++..|++++|.++|++.+.-+|.+..++-.-..+...+|+--+|.+-....++..
T Consensus 71 Aq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F 150 (289)
T KOG3060|consen 71 AQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF 150 (289)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence 44577887788899999999999999999999999999999999999999988877777777888889999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCCcHHHHH
Q 004187 347 VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK--DPKLAHNVFEAGLKRFMHEPAYIL 424 (770)
Q Consensus 347 p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g--~~~~A~~ife~alk~~p~~~~~~l 424 (770)
+. +.++|-.++..+...+.+++|.-++++.+-..|..+..+..+|.+.|...| ++.-|++.|+++++.+|.+...|+
T Consensus 151 ~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 151 MN-DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred cC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 88 789999999999999999999999999999888878888889999887523 677899999999999997665554
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.87 E-value=1.7e-07 Score=111.25 Aligned_cols=222 Identities=14% Similarity=0.066 Sum_probs=164.5
Q ss_pred HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-------
Q 004187 277 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT------- 349 (770)
Q Consensus 277 ~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~------- 349 (770)
..|.+.++|..++..+...+++++|.++++.+++.+|+...+|+..|.++.+.++++++.-+ +++...+..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 46788999999999999999999999999999999999999999999999888887777666 555554431
Q ss_pred -----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 350 -----------TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 350 -----------~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
...+.+.++.++.+.|+.++|..+|+++++.++.+..+..++|+.+... +.++|++++.++++.+-+
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHh
Confidence 1257778888888889999999999999998888888888888876553 899999999998886432
Q ss_pred ------cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccc
Q 004187 419 ------EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEE 492 (770)
Q Consensus 419 ------~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~~e~ 492 (770)
--++|..++.+-.. +.+.-..+.++.++.........+|...-.......+.+....+++++++..+ .
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~--d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~----~ 255 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSD--DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN----K 255 (906)
T ss_pred hhcchHHHHHHHHHHhcCcc--cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC----c
Confidence 12567666654322 33444555556555544334455555555555566788899999999999998 3
Q ss_pred ccchhhhhHHhhhhhc
Q 004187 493 GASALEDSLQDVVSRY 508 (770)
Q Consensus 493 ~~~~~e~ll~~~~~Ry 508 (770)
+.-++..+...+...|
T Consensus 256 n~~a~~~l~~~y~~kY 271 (906)
T PRK14720 256 NNKAREELIRFYKEKY 271 (906)
T ss_pred chhhHHHHHHHHHHHc
Confidence 4444555655555554
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=2.6e-07 Score=93.23 Aligned_cols=178 Identities=13% Similarity=0.026 Sum_probs=151.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 004187 268 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV 347 (770)
Q Consensus 268 ~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p 347 (770)
...+-+....+|.+..+ +.++..+...|+-+.+..+...+....|.+..+...++......|++..|...+.++....|
T Consensus 53 ~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p 131 (257)
T COG5010 53 AAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP 131 (257)
T ss_pred HHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC
Confidence 34556666778888889 99999999999988898899998888899988888888888999999999999999999988
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004187 348 NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA 427 (770)
Q Consensus 348 ~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya 427 (770)
+ +..+|..++-.+.+.|+++.|+.-|.++++..+....++-+++..++- .|+++.|+.++..+...-+.+..+-.+.+
T Consensus 132 ~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 132 T-DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred C-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 8 788999999999999999999999999998877777888888776554 59999999999988888887888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 004187 428 DFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 428 ~~l~~~g~~~~Ar~lferaL~ 448 (770)
.....+|++..|+.+-..-+.
T Consensus 210 l~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHhhcCChHHHHhhcccccc
Confidence 888889999888877665443
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=2.7e-07 Score=101.44 Aligned_cols=182 Identities=11% Similarity=-0.052 Sum_probs=140.3
Q ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH---HHHHHHHhCcHHHHHHHHHH
Q 004187 268 IFTYEQCLMYLYH---YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYA---FAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 268 ~~~ye~aL~~~p~---~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~---~a~~~~~~g~~e~A~~iye~ 341 (770)
...|.+.....+. ..+..+..+..+...|++++|.+.+++++...|++...+.. +.......+..+.+.+.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (355)
T cd05804 26 AAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL 105 (355)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc
Confidence 3466666666553 45677778888999999999999999999999999877663 22222224555556666555
Q ss_pred HhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH-
Q 004187 342 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP- 420 (770)
Q Consensus 342 al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~- 420 (770)
.....+. ...++..++..+...|++++|...|+++++..+....++..++.+.+.. |++++|...++++++..|.++
T Consensus 106 ~~~~~~~-~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~~~~ 183 (355)
T cd05804 106 WAPENPD-YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDCSSM 183 (355)
T ss_pred cCcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCCCcc
Confidence 3344444 4455566777888899999999999999998888888888899988885 999999999999999876543
Q ss_pred ---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 421 ---AYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 421 ---~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
..|..++.++..+|++++|..+|++++...+
T Consensus 184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 184 LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 3466889999999999999999999975433
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=4.3e-08 Score=110.24 Aligned_cols=150 Identities=11% Similarity=0.125 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR 432 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~ 432 (770)
+...++....+.+++.++.+.|++.++.++.....|..++.+...+ ++...|.+.|.+++...|++.+.|.++...+++
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL-EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 3344444455568889999999999999999999999999988886 999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccchhhhhHHhhhhh
Q 004187 433 LNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSR 507 (770)
Q Consensus 433 ~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~~e~~~~~~e~ll~~~~~R 507 (770)
.++..+|+..+.+|++-.- ++..+|..|+..-...|..+.+.+.++|....-.... |+ ..+..+..+..++
T Consensus 566 ~~~k~ra~~~l~EAlKcn~--~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~-d~-~vl~~iv~~~~~~ 636 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNY--QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK-DD-EVLLIIVRTVLEG 636 (777)
T ss_pred HhhhHHHHHHHHHHhhcCC--CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc-cc-hhhHHHHHHHHhh
Confidence 9999999999999999764 8889999999999999999999999999987665322 33 2334555555555
No 111
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.77 E-value=5.8e-07 Score=101.28 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=160.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC--
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA--------LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV-- 347 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~--------~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p-- 347 (770)
.|.--.+...++..+...|+++.|...|++|+.. +|.-......+|.+|...+++++|..+|++++.+..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3444455666899999999999999999999998 555555566799999999999999999999997522
Q ss_pred ---C--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-------CCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004187 348 ---N--TTALAHIQFIRFLRRTEGVEAARKYFLDARKS-------PNF-TYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 348 ---~--~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~-------~~~-~~~~yi~~a~le~~~~g~~~~A~~ife~alk 414 (770)
. ....+++.++..+.+.|++++|...+++|++. ... -...+...+.+... .+++++|..+|.++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~-~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS-MNEYEEAKKLLQKALK 353 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHH
Confidence 1 14567889999999999999999999999863 111 12234444444333 5899999999999998
Q ss_pred hCC-----C---cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------chhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004187 415 RFM-----H---EPAYILEYADFLSRLNDDRNIRALFERALSSLP-------PEESIEVWKRFTQFEQMYGDLDSTLKVE 479 (770)
Q Consensus 415 ~~p-----~---~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p-------~~~~~~lw~~~~~fE~~~Gd~~~~~k~~ 479 (770)
..- + -+.+...++..+...|++++|+.+|++|++... ......||.--... .+.+....+.+++
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~-~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY-EELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH-HHhcccchHHHHH
Confidence 632 2 346778999999999999999999999998542 11234566554444 5667888888888
Q ss_pred HHHHHhcccccccc
Q 004187 480 QRRKEALSRTGEEG 493 (770)
Q Consensus 480 ~R~~~~~~~~~e~~ 493 (770)
.+.+...+.-+.++
T Consensus 433 ~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHhCCCC
Confidence 88888774334444
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=8.9e-07 Score=89.37 Aligned_cols=174 Identities=12% Similarity=0.028 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 004187 300 AAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK 379 (770)
Q Consensus 300 ~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~ 379 (770)
.+...+-+....+|++..+ ..++..+...|+-+....+..+++...+. ...+...+++...+.|++..|...|.++..
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 3666677778889999999 89999999999888888888776666665 456666699999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHH
Q 004187 380 SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVW 459 (770)
Q Consensus 380 ~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw 459 (770)
..+.++.+|...+.++-+. |+.+.|+.-|.++++.+|+++.+..+.+-.+.-.|+++.|+.++.++...-+ ....|-
T Consensus 129 l~p~d~~~~~~lgaaldq~-Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~--ad~~v~ 205 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQL-GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA--ADSRVR 205 (257)
T ss_pred cCCCChhhhhHHHHHHHHc-cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC--CchHHH
Confidence 9999999999999987775 9999999999999999999999999999999999999999999999987654 445666
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q 004187 460 KRFTQFEQMYGDLDSTLKV 478 (770)
Q Consensus 460 ~~~~~fE~~~Gd~~~~~k~ 478 (770)
...+..-...|++..++++
T Consensus 206 ~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 206 QNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHhhcCChHHHHhh
Confidence 6666666678998776664
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=0.00079 Score=75.00 Aligned_cols=427 Identities=12% Similarity=0.059 Sum_probs=235.3
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CChHHHHHHHHHHH
Q 004187 23 VETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC--LQVPLWRCYIRFIR 100 (770)
Q Consensus 23 ~~aw~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~--p~~~lW~~y~~~~~ 100 (770)
...|..+-....++++++|.+.-.+++...|++.....--+-..++.+.|+.|..+.+.-.... ....+-+.|+.|-.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 3566677667777899999999999999999999888888888888999999886655443321 22235677777643
Q ss_pred HHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHH-HHH
Q 004187 101 KVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVE-QLW 179 (770)
Q Consensus 101 ~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~-~l~ 179 (770)
|. .+++.+.++ |.++....+-.-+.+.+- ..+++++|.++|+..+++.....+ .+-
T Consensus 93 --nk------~Dealk~~~------~~~~~~~~ll~L~AQvlY---------rl~~ydealdiY~~L~kn~~dd~d~~~r 149 (652)
T KOG2376|consen 93 --NK------LDEALKTLK------GLDRLDDKLLELRAQVLY---------RLERYDEALDIYQHLAKNNSDDQDEERR 149 (652)
T ss_pred --cc------HHHHHHHHh------cccccchHHHHHHHHHHH---------HHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 21 345555554 345444434444444432 257788999999998876221111 110
Q ss_pred HHHHH--------HHHHhhH--h-HHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHH---
Q 004187 180 KDYEN--------FENSVSR--Q-LAK-----GLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQ--- 240 (770)
Q Consensus 180 ~~y~~--------fe~~~~~--~-la~-----~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~--- 240 (770)
..+.. +.+.+.. . ... ..+.--.++|.+|.+++......+.. -+.-...+.-.-..+
T Consensus 150 ~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e----~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 150 ANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE----KLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----hhcccccchhhHHHHHHH
Confidence 00000 0110000 0 000 01111235667777666553222211 000111110000111
Q ss_pred HHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CHH--HHHHHHHHHHHhCCCc
Q 004187 241 WIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG---SID--AAIKVFQRALKALPDS 315 (770)
Q Consensus 241 ~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g---~~e--~A~~v~erAi~~~P~s 315 (770)
+.+-..|+... .+..+.+..+|..++..++.+...-.-...-+.... ++. .++..++.-...+++-
T Consensus 226 IrvQlayVlQ~---------~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 226 IRVQLAYVLQL---------QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred HHHHHHHHHHH---------hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 11222222211 133455666788888777766544333333332211 111 2233333333332221
Q ss_pred H----------HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC-
Q 004187 316 E----------MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT- 384 (770)
Q Consensus 316 ~----------~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~- 384 (770)
. .+....+.+..-.+..+.++++-.+.-...|.....+...-+.. .+......|..++...-+..++.
T Consensus 297 ~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~-~~~~~~~ka~e~L~~~~~~~p~~s 375 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATK-VREKKHKKAIELLLQFADGHPEKS 375 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHH-HHHHHHhhhHHHHHHHhccCCchh
Confidence 1 12222222222233334444444333333332112222222222 22235778888888888776664
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-c
Q 004187 385 YHVYVAYALMAFCQDKDPKLAHNVFEAGLK-------RFMHEPAYILEYADFLSRLNDDRNIRALFERALSS----LP-P 452 (770)
Q Consensus 385 ~~~yi~~a~le~~~~g~~~~A~~ife~alk-------~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~----~p-~ 452 (770)
..+.+..+++.... |+++.|.++++..+. ...+.|.+.-....++.+.++-+.|.+++..|+.- .+ .
T Consensus 376 ~~v~L~~aQl~is~-gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQ-GNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 56777778887775 999999999984442 23456666666666777888888899999999973 22 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 453 EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 453 ~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.....+|...+.|+.++|+...+..+++...+..|
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 23457888999999999999999999999999888
No 114
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=1.4e-06 Score=97.19 Aligned_cols=220 Identities=15% Similarity=0.120 Sum_probs=152.5
Q ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 262 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
+..+.+...-+.++..++.+.-+|.-++.++....++++|++.|.+|++..|+|..+|.-++.+..+.++++-....-.+
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34455556667777888888888999988888888889999999999998899988888888888888888888888888
Q ss_pred HhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHH
Q 004187 342 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN--FTYHVYVAYALMAFC-----QDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 342 al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~--~~~~~yi~~a~le~~-----~~g~~~~A~~ife~alk 414 (770)
.++..|. ....|+.++....-.|++..|..+.+...+... .....+-..-.++++ ..|..++|.+....--+
T Consensus 135 LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 135 LLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 8888887 567888888888888888888888777766542 233333333222222 12555555554444333
Q ss_pred hCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHhcc
Q 004187 415 RFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDL----DSTLKVEQRRKEALS 487 (770)
Q Consensus 415 ~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~----~~~~k~~~R~~~~~~ 487 (770)
..-+...+-...++++.++++.++|..+|.+.+..+| ++ |..+..++...|.+ ..+..++.+..+.+|
T Consensus 214 ~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP--dn---~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 214 QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP--DN---LDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc--hh---HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 3444556667788888899999999999999988888 43 33444444444422 223344444444444
No 115
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.73 E-value=9.5e-06 Score=92.53 Aligned_cols=136 Identities=15% Similarity=0.057 Sum_probs=106.6
Q ss_pred HHHH--HHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 352 LAHI--QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 429 (770)
Q Consensus 352 ~~w~--~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~ 429 (770)
.+|. .+++.+...|++++|..+.++||+..|...+.|+..|.++-+. |++.+|.+.++.+.+.+..+.-+-...+.+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~-G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA-GDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 4564 4478888889999999999999998888889999999987664 999999999999999988887777888889
Q ss_pred HHhcCChhHHHHHHHHHHhCC--Cc---hhHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhccc
Q 004187 430 LSRLNDDRNIRALFERALSSL--PP---EESIEVWKRFTQFEQ--MYGDLDSTLKVEQRRKEALSR 488 (770)
Q Consensus 430 l~~~g~~~~Ar~lferaL~~~--p~---~~~~~lw~~~~~fE~--~~Gd~~~~~k~~~R~~~~~~~ 488 (770)
+.+.|+.++|..++....... |. .+...+|.....-+. +.|+...+++-+....+.|..
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999988877766543 11 123456765544333 569999999988888888874
No 116
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.72 E-value=2.4e-07 Score=100.28 Aligned_cols=149 Identities=16% Similarity=0.215 Sum_probs=118.3
Q ss_pred chhhhhccccCCCCCHHHHHHHHHHhcCC-------------ChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHH
Q 004187 8 PESEENITGVADKYNVETAEILANSALHL-------------PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDA 74 (770)
Q Consensus 8 ~e~e~~i~~~~~P~d~~aw~~l~~~~~~~-------------~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~ 74 (770)
-|++++++ .||.|+++|+.|++.-... -.+....+|++||+.+|.+.++|+.|++...+.-+.+.
T Consensus 6 ~el~~~v~--~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVR--ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHH--hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 36788999 9999999999998754321 13456789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCCh---------------hhHHHH
Q 004187 75 TKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSG---------------PIWLEY 138 (770)
Q Consensus 75 a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~---------------~lW~~y 138 (770)
+.+.+++++..+| ++.||..|+.|...... .-..+.++++|.++|+.+....... .+...+
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~---~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~ 160 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQSNFA---SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRL 160 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 9999999999998 79999999999987432 1247899999999998764332221 145566
Q ss_pred HHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc
Q 004187 139 ITFLKSLPALNAQEESQRMIAIRKAYQRAVVT 170 (770)
Q Consensus 139 i~fl~~~~~~~~~~~~~~~~~ar~vyqral~~ 170 (770)
..|+.. .|..+.|..++|-.+..
T Consensus 161 ~~fl~~---------aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 161 CRFLRQ---------AGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHH---------CCchHHHHHHHHHHHHH
Confidence 666653 46678888888888864
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=2.8e-06 Score=101.10 Aligned_cols=197 Identities=10% Similarity=0.043 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----
Q 004187 241 WIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE---- 316 (770)
Q Consensus 241 ~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~---- 316 (770)
...|..++...+.. ...+.+..+.+.++..+|+...+|+..|.++.+.++.+.+.-+ +++...+.+.
T Consensus 31 ~~a~~~Li~~~~~~-------~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 31 FKELDDLIDAYKSE-------NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred HHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 46888888766432 2456778899999999999999999999999998887776665 6666655554
Q ss_pred ---------------HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-
Q 004187 317 ---------------MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS- 380 (770)
Q Consensus 317 ---------------~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~- 380 (770)
.+++.+|.+|.+.|+.++|..+|+++|+.+|. ++.+...|+.++... ++++|+.++.+|+..
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999998 789999999998888 999999999999863
Q ss_pred --C---CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 381 --P---NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR--FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 381 --~---~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~--~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
. ....++|..+ .....-+.+.=..+.++.+.. +..-..++.-.-.++...++++++..+|.++|...|
T Consensus 180 i~~kq~~~~~e~W~k~---~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 180 IKKKQYVGIEEIWSKL---VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred HhhhcchHHHHHHHHH---HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 1 1112222222 111123444444444444443 223345555555667777889999999999999877
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=3.7e-06 Score=91.56 Aligned_cols=154 Identities=14% Similarity=0.024 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 279 p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
|....+||..|.-+...|++++|++.+...++..|+|..+|...++++...++..+|.+.+++++...|. ...+|+.|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHH
Confidence 5677788888888888888888888888888888888888888888888888888888888888888887 477888888
Q ss_pred HHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhH
Q 004187 359 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 438 (770)
Q Consensus 359 ~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~ 438 (770)
+.+...|++++|+.++++.+...+.+...|-.+|..+-.. |+..+| ...+++.+...|+++.
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~-g~~~~a-----------------~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL-GNRAEA-----------------LLARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh-CchHHH-----------------HHHHHHHHHhCCCHHH
Confidence 8888888888888888888887777777777777764443 554443 3456666666777777
Q ss_pred HHHHHHHHHhCCC
Q 004187 439 IRALFERALSSLP 451 (770)
Q Consensus 439 Ar~lferaL~~~p 451 (770)
|...+.++.+...
T Consensus 444 A~~~l~~A~~~~~ 456 (484)
T COG4783 444 AIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHhcc
Confidence 7777777776543
No 119
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.51 E-value=1.7e-06 Score=73.33 Aligned_cols=97 Identities=21% Similarity=0.160 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 363 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r 363 (770)
+|+..+..+...|++++|...|+++++..|.+..+|+.++.++...+++++|.+.|++++...+. ...+|..++..+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 57888888888999999999999999999988888888999999999999999999999988876 45788888888888
Q ss_pred hcCHHHHHHHHHHHHcCC
Q 004187 364 TEGVEAARKYFLDARKSP 381 (770)
Q Consensus 364 ~~~~e~A~~~f~~Al~~~ 381 (770)
.++++.|...|.++++..
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 888888888888887654
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=4e-06 Score=94.78 Aligned_cols=119 Identities=15% Similarity=-0.001 Sum_probs=85.9
Q ss_pred HhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004187 328 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN 407 (770)
Q Consensus 328 ~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ 407 (770)
+.++|+++.+.+++.++.+|- ....|+.++..+...++.+.|-+.|.+++...|.....|.+++...... |+..+|..
T Consensus 497 ~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~-~~k~ra~~ 574 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL-KKKKRAFR 574 (777)
T ss_pred cchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH-hhhHHHHH
Confidence 346667777777777777776 5677777777777777777777777777777777777777776665554 67777777
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 408 VFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 408 ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
.+.+++|.+-.+..+|.+|.-...+.|++++|...|.|.+.
T Consensus 575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 77777777766667777777777777777777777777665
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.46 E-value=2.6e-06 Score=80.61 Aligned_cols=102 Identities=14% Similarity=-0.006 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 279 p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
+..-+..|.+|-.+...|++++|.++|+-++...|.+...|+.+|.++...|++++|...|.+++...|+ .+..+...+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 4556778889999999999999999999999999999999999999999999999999999999999987 678888888
Q ss_pred HHHHHhcCHHHHHHHHHHHHcCC
Q 004187 359 RFLRRTEGVEAARKYFLDARKSP 381 (770)
Q Consensus 359 ~~~~r~~~~e~A~~~f~~Al~~~ 381 (770)
..+...|+.+.|++.|+.|+...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888999999999999988754
No 122
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.43 E-value=4.6e-06 Score=75.70 Aligned_cols=103 Identities=23% Similarity=0.237 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--cHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--TALAHIQ 356 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~--~~~~w~~ 356 (770)
+++++..+..+...|++++|.+.|++++...|++ ...++.++.++...|+++.|...|++++...|.. ...+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678888899999999999999999999888876 4677888888888899999999999888877652 2456777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHcCCCCC
Q 004187 357 FIRFLRRTEGVEAARKYFLDARKSPNFT 384 (770)
Q Consensus 357 ~~~~~~r~~~~e~A~~~f~~Al~~~~~~ 384 (770)
++..+...+++++|...|+++++..+.+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 7777777777777777777777765543
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=5.5e-05 Score=82.57 Aligned_cols=134 Identities=13% Similarity=-0.005 Sum_probs=121.5
Q ss_pred CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004187 313 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 392 (770)
Q Consensus 313 P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a 392 (770)
|.....|+..|.-+...|++++|++.+..+++..|+ +.-.|...++.+.+.++.++|.+.|++++...|...-+++++|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 788899999999999999999999999999999998 6777778889999999999999999999999888888999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 393 LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 393 ~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
..+... |++.+|..++.+.+...|+++..|..+++-+..+|+..++...+-..+.
T Consensus 382 ~all~~-g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 382 QALLKG-GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHhc-CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 998885 9999999999999999999999999999999999998777766655544
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.41 E-value=4.7e-06 Score=91.61 Aligned_cols=90 Identities=13% Similarity=0.044 Sum_probs=45.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHH
Q 004187 289 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE 368 (770)
Q Consensus 289 a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e 368 (770)
|..+...|++++|+..|++|+...|++..+|+.+|.++...|++++|...+++++...|. ...+|+.++..+...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 444445555555555555555555555555555555555555555555555555555554 3344444444333333333
Q ss_pred HHHHHHHHHHc
Q 004187 369 AARKYFLDARK 379 (770)
Q Consensus 369 ~A~~~f~~Al~ 379 (770)
+|+..|+++++
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 125
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.41 E-value=1.4e-06 Score=71.50 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-cHHHHHHHHHHHhccCC
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG-AIAAAKKLYESLLTDSV 347 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g-~~e~A~~iye~al~~~p 347 (770)
++.+|..+|..+...|++++|+..|+++++.+|++..+|+.+|.++...| ++++|.+.|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999998876
No 126
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.41 E-value=3.9e-06 Score=79.45 Aligned_cols=104 Identities=12% Similarity=-0.072 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004187 313 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 392 (770)
Q Consensus 313 P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a 392 (770)
++..+..+.+|..+.+.|++++|.++|+-++..+|. +..-|+.++-.+...|++++|+..|.+|+...+.++..+.+.|
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 455566677777777778888888888877777777 6777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 393 LMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 393 ~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
...... |+.+.|++.|+.++.....
T Consensus 111 ~c~L~l-G~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 111 ECYLAC-DNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHhcc
Confidence 776665 7777777777777776533
No 127
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.40 E-value=0.0015 Score=69.83 Aligned_cols=196 Identities=14% Similarity=0.046 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC----------------
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS---------------- 346 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~---------------- 346 (770)
-+.+..++.+...|+++.|+.-...+.+..|.+..+.-....+|...|++.....+..++-+..
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~ 233 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE 233 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 3445555555555555666666666666656555555555555555555555444444333221
Q ss_pred ----------------------C---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 004187 347 ----------------------V---NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD 401 (770)
Q Consensus 347 ----------------------p---~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~ 401 (770)
| .....+-+.++..+.+.|..++|.++.+++++..-. ..+..-+.. -..++
T Consensus 234 glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~~---l~~~d 309 (400)
T COG3071 234 GLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIPR---LRPGD 309 (400)
T ss_pred HHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHhh---cCCCC
Confidence 0 013456678888888899999999999999986543 222222222 23588
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004187 402 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQR 481 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R 481 (770)
...-.+..|+.++..|++|.+++..+..+.+.+.+.+|...|+.|++.-|. ..-|.-.+....+.|+...+..+.+.
T Consensus 310 ~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s---~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS---ASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred chHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC---hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999997662 22344444445578999888877666
Q ss_pred HHHh
Q 004187 482 RKEA 485 (770)
Q Consensus 482 ~~~~ 485 (770)
..-.
T Consensus 387 ~L~~ 390 (400)
T COG3071 387 ALLL 390 (400)
T ss_pred HHHH
Confidence 6533
No 128
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.40 E-value=0.0027 Score=67.95 Aligned_cols=141 Identities=19% Similarity=0.076 Sum_probs=113.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 269 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 269 ~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
...++.-....+++.+-..||.-+++.|+.++|.++.+.+++..-+.. +...+.. .+-++...-.+..++.++..|+
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPR--LRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhh--cCCCCchHHHHHHHHHHHhCCC
Confidence 344555555668899999999999999999999999999999876555 2222222 2457788888999999999998
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 349 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 349 ~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
.+.+|..++.++.+++.+.+|...|+.|++..+. .+-|..+|...-.. |+...|..+++.++-.
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~-g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQL-GEPEEAEQVRREALLL 390 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHc-CChHHHHHHHHHHHHH
Confidence 6799999999999999999999999999987664 56666667765564 9999999999999864
No 129
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.0065 Score=67.99 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
..++.+.+.+..-.+..+.+++...+.-...|....--........+....-.+.+++..+....|.....+-+..+++.
T Consensus 307 ~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 307 QAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 34566666666666666666666554444444432111111122222225667788888888888774456778888999
Q ss_pred HHhcCHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----CCc---HHHHHHH
Q 004187 362 RRTEGVEAARKYFLDAR--------KSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF----MHE---PAYILEY 426 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al--------~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~----p~~---~~~~l~y 426 (770)
..+|+++.|..++...+ +... ....+.+...++..-++.+.|..++..+++.. +.. ..+|-..
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 99999999999998333 2222 12223333333333477778888888888753 222 2466678
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 004187 427 ADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLK 477 (770)
Q Consensus 427 a~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k 477 (770)
+.|..+.|+-++|..+++..++.+| ...++....+.... .=|++.++.
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~--~d~~~l~~lV~a~~-~~d~eka~~ 512 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNP--NDTDLLVQLVTAYA-RLDPEKAES 512 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCC--chHHHHHHHHHHHH-hcCHHHHHH
Confidence 8999999999999999999999888 44455444443332 225544433
No 130
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.34 E-value=6.6e-06 Score=69.67 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR 432 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~ 432 (770)
+|+..+..+...+++++|..+|+++++..+....++..++.+.... +++++|.++|+.+++..|.+..++...+.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3455555555566666666666666665554455555666655553 666666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 004187 433 LNDDRNIRALFERALSSLP 451 (770)
Q Consensus 433 ~g~~~~Ar~lferaL~~~p 451 (770)
.|++++|..++++++...|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 6677777777766665544
No 131
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.33 E-value=9.4e-06 Score=89.28 Aligned_cols=91 Identities=12% Similarity=-0.008 Sum_probs=46.7
Q ss_pred HHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHH
Q 004187 360 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNI 439 (770)
Q Consensus 360 ~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~A 439 (770)
-+...++++.|+.+|.+|++..+....+|..+|.++... |++++|...++++++..|+++.+|+.++..+..+|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~-g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKL-GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 333445555555555555554444445555555444443 5555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhCCC
Q 004187 440 RALFERALSSLP 451 (770)
Q Consensus 440 r~lferaL~~~p 451 (770)
...|++++...|
T Consensus 90 ~~~~~~al~l~P 101 (356)
T PLN03088 90 KAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHhCC
Confidence 555555555544
No 132
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.32 E-value=2.4e-05 Score=84.81 Aligned_cols=110 Identities=18% Similarity=0.227 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHH
Q 004187 269 FTYEQCLMYLYHYPDIWYDYATWNAKSGS------------IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAK 336 (770)
Q Consensus 269 ~~ye~aL~~~p~~~~~w~~~a~~l~~~g~------------~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~ 336 (770)
.-|++.+..+|++.+.|+.++.+....-. .+.-+.+|++|++.+|++..|+..|.....+.-+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46899999999999999999999877532 456688999999999999999999999999988999999
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHh---cCHHHHHHHHHHHHc
Q 004187 337 KLYESLLTDSVNTTALAHIQFIRFLRRT---EGVEAARKYFLDARK 379 (770)
Q Consensus 337 ~iye~al~~~p~~~~~~w~~~~~~~~r~---~~~e~A~~~f~~Al~ 379 (770)
+.+++++..+|. ...+|..|.++.... -.+...+.+|.+++.
T Consensus 86 ~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 999999999998 789999999988763 357889999998875
No 133
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=6.5e-06 Score=84.74 Aligned_cols=106 Identities=13% Similarity=0.013 Sum_probs=69.0
Q ss_pred HhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004187 328 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN 407 (770)
Q Consensus 328 ~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ 407 (770)
+.++|++|...|.+||+..|. ++-.|+..+..+.+.|.++.|.+-++.|+..++..+.+|..++...+.+ |++++|..
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~-gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL-GKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc-CcHHHHHH
Confidence 445566666666666666655 4555556666666666666666666666666666677777777776664 88888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 004187 408 VFEAGLKRFMHEPAYILEYADFLSRLND 435 (770)
Q Consensus 408 ife~alk~~p~~~~~~l~ya~~l~~~g~ 435 (770)
.|+++|...|++..++...-.....+++
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 8888888888887666555444444443
No 134
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=8.2e-06 Score=84.02 Aligned_cols=95 Identities=16% Similarity=-0.007 Sum_probs=74.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHH
Q 004187 290 TWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEA 369 (770)
Q Consensus 290 ~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~ 369 (770)
.=+.+.+++++|+..|.+||+..|++..++...|..|.++|.++.|.+-.+.+|.++|. ...+|..++..+...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 33455667888888888888888888888888888888888888888888888888877 67788888877777888888
Q ss_pred HHHHHHHHHcCCCCCH
Q 004187 370 ARKYFLDARKSPNFTY 385 (770)
Q Consensus 370 A~~~f~~Al~~~~~~~ 385 (770)
|...|++|++..|...
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 8888888888777643
No 135
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.5e-05 Score=84.92 Aligned_cols=168 Identities=14% Similarity=-0.049 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-----------cH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-----------TA 351 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~-----------~~ 351 (770)
..-+.-+.++.-.|++++|.++--+.++.++.+.+..+..+.++.-.++.+.|...|+++|...|+. ..
T Consensus 170 ~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 170 KAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKL 249 (486)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHH
Confidence 4555667788888999999999999999999999988888888888889999999999999988862 24
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNF----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA 427 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~----~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya 427 (770)
.+|-.-++-..+.|++..|-++|..||..+|. ..++|.+.|.....+ |+..+|+.-.+.++++.+.....++..+
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL-grl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL-GRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc-CCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 57777888888899999999999999988765 467788888887776 9999999999999999988888889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 004187 428 DFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 428 ~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
.++..++++++|.+-|++|++.-.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998643
No 136
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.27 E-value=9.3e-07 Score=90.34 Aligned_cols=93 Identities=24% Similarity=0.317 Sum_probs=83.9
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHH
Q 004187 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFML 122 (770)
Q Consensus 44 ~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL 122 (770)
.|.|....||++..+|..|+..-.+.+.+.++..+|..||..+| |+++|..-+.|+...+. +++..|.+|.++|
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a-----ni~s~Ra~f~~gl 169 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA-----NIESSRAMFLKGL 169 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc-----cHHHHHHHHHhhh
Confidence 46678889999999999999999999999999999999999999 89999999999988664 5899999999998
Q ss_pred HhcCCCCCChhhHHHHHHHHhh
Q 004187 123 SHVGSDISSGPIWLEYITFLKS 144 (770)
Q Consensus 123 ~~ig~dp~s~~lW~~yi~fl~~ 144 (770)
+. .+.+..+|.+|++|+.+
T Consensus 170 R~---N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 170 RM---NSRSPRIWIEYFRMELM 188 (435)
T ss_pred cc---CCCCchHHHHHHHHHHH
Confidence 85 67777899999999865
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=2.9e-05 Score=73.97 Aligned_cols=111 Identities=19% Similarity=0.132 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHH
Q 004187 266 RIIFTYEQCLMYLYHY---PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLY 339 (770)
Q Consensus 266 r~~~~ye~aL~~~p~~---~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iy 339 (770)
.+...+++.+...|.+ ..+++.+|..+...|++++|...|+.++...|+. ..+++.++.++...|++++|...+
T Consensus 29 ~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 29 KAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445677777777776 4567778888888888888888888888877654 345667788888888888888888
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004187 340 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDAR 378 (770)
Q Consensus 340 e~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al 378 (770)
+.. ...+. ...++...++.+.+.|+.++|+..|++|+
T Consensus 109 ~~~-~~~~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 109 QQI-PDEAF-KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred Hhc-cCcch-HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 652 22222 35566777778888888888888887764
No 138
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.8e-05 Score=80.58 Aligned_cols=118 Identities=14% Similarity=0.006 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---CcHHHHHHHHH
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR---GAIAAAKKLYE 340 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~---g~~e~A~~iye 340 (770)
.++++.-.+.-|..+|.+.+-|..++.++..+|+...|...|.+|++..|++.+++..||..+... ....+++.+|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 456777889999999999999999999999999999999999999999999999999998876543 23467889999
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC
Q 004187 341 SLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 341 ~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~ 382 (770)
++++.+|. +..+...++.-+..+|++++|...++..++..+
T Consensus 218 ~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 218 QALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999987 566667777777778888888888888887643
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.24 E-value=4.6e-05 Score=74.82 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHH
Q 004187 280 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 356 (770)
Q Consensus 280 ~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~ 356 (770)
.....++.++..+...|++++|...|++++...|+. ..+|+.+|.++...|++++|...|++++...|. ....+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 455678999999999999999999999999887653 468889999999999999999999999999887 5777888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc
Q 004187 357 FIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 419 (770)
Q Consensus 357 ~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~ 419 (770)
++..+...+....+..-+.+|+. .+++|.+++++++...|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchh
Confidence 88887777776655544444321 2455777777777777765
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=4.4e-05 Score=72.72 Aligned_cols=116 Identities=17% Similarity=0.195 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--cHHHHHHHHHHHHHhcCHHH
Q 004187 295 SGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--TALAHIQFIRFLRRTEGVEA 369 (770)
Q Consensus 295 ~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~--~~~~w~~~~~~~~r~~~~e~ 369 (770)
.++...+...+++.+...|++ ...++.+|..+...|++++|...|+.++...++. ...+++.++..+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455666666666666666666 3445555666666666666666666666655331 12244444455555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004187 370 ARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAG 412 (770)
Q Consensus 370 A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~a 412 (770)
|+..++.. ........++...+.++... |+.++|+..|+++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~-g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQ-GDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHC-CCHHHHHHHHHHh
Confidence 55555332 11222223333344443332 4555555555443
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.21 E-value=2.4e-05 Score=83.30 Aligned_cols=197 Identities=14% Similarity=0.118 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKAL-P-DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 360 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~-P-~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~ 360 (770)
.+...++.++...++.+.++..++..+... + .+..+.+.-|.++...|++++|.+++.+. . ..+.....+..
T Consensus 67 ~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~-~lE~~al~Vqi 140 (290)
T PF04733_consen 67 QAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----G-SLELLALAVQI 140 (290)
T ss_dssp HHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----T-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----C-cccHHHHHHHH
Confidence 444555666654445555555554443322 2 33444455566666678777777766543 1 34555555667
Q ss_pred HHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHH
Q 004187 361 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ-DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNI 439 (770)
Q Consensus 361 ~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~-~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~A 439 (770)
+.+.++++.|.+.|+.+.+......-+.+.-|.+-... ..++..|.-+|+....+++.++.++...+.+++.+|++++|
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 77788888888888888776554332222222232222 13578888888887777877888888888888888888888
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcc
Q 004187 440 RALFERALSSLPPEESIEVWKRFTQFEQMYGDL-DSTLKVEQRRKEALS 487 (770)
Q Consensus 440 r~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~-~~~~k~~~R~~~~~~ 487 (770)
..+++.++...| ++.+.+...+......|+. +.+.+.........|
T Consensus 221 e~~L~~al~~~~--~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 221 EELLEEALEKDP--NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHCCC-C--CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHhcc--CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 888888887776 5566666777776677766 445555555555544
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.18 E-value=7.2e-05 Score=85.88 Aligned_cols=141 Identities=15% Similarity=0.041 Sum_probs=71.6
Q ss_pred HcCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh--------CcHHHHHHHHHHHh
Q 004187 277 YLYHYPDIWYDYATWNAKS--G---SIDAAIKVFQRALKALPDSEMLRYAFAELEESR--------GAIAAAKKLYESLL 343 (770)
Q Consensus 277 ~~p~~~~~w~~~a~~l~~~--g---~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~--------g~~e~A~~iye~al 343 (770)
..|.++++|-.|.+..... + +...|+.+|++|++..|++..+|-.++.++... .+.+.+....++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4466777776666554332 2 256788888888888888877766555544322 11223333333333
Q ss_pred cc--CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 344 TD--SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 344 ~~--~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
.. .+. .+.+|..++-.....|++++|...|++|+...+ ++..|+.++.+.... |+.++|...|++++...|..+
T Consensus 412 al~~~~~-~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~-G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNV-LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELK-GDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCc
Confidence 32 222 233444444444444555555555555555444 244444444443332 555555555555555555444
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.18 E-value=5e-06 Score=67.31 Aligned_cols=63 Identities=29% Similarity=0.358 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 286 YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 286 ~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
+..|..+...|++++|+.+|+++++..|++..+|+.+|.++...|++++|...|+++++..|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 457888889999999999999999999999999999999999999999999999999988876
No 144
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.16 E-value=2.6e-05 Score=83.06 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-cHHHHHHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-TALAHIQFIR 359 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~-~~~~w~~~~~ 359 (770)
++-+....|.++...|++++|++++.+. ++.++......++...++++.|.+.++.+-+...+. ...+...|..
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 4455666677777889999999888765 567777677788899999999999999988876652 1122334444
Q ss_pred HHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCh-hH
Q 004187 360 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD-RN 438 (770)
Q Consensus 360 ~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~-~~ 438 (770)
+..-.+.+.+|..+|++..+..+.+..+....|.+.... |++++|.++++.++.+.|++++.+.+.+-+...+|+. +.
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~-~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL-GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC-T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 444445689999999998887666788888888876665 9999999999999999999999999999999999987 66
Q ss_pred HHHHHHHHHhCCC
Q 004187 439 IRALFERALSSLP 451 (770)
Q Consensus 439 Ar~lferaL~~~p 451 (770)
+...+++.-...|
T Consensus 255 ~~~~l~qL~~~~p 267 (290)
T PF04733_consen 255 AERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHCHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 7777777666666
No 145
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.16 E-value=5.4e-06 Score=84.89 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhCcHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEE-SRGAIAAAKKLYES 341 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~-~~g~~e~A~~iye~ 341 (770)
..+++.+.|.++....+.++.+|.+|+.+....+.+.+.-.+|..+++.+|.+.++|+.-+.++. ..++++.+|.+|.+
T Consensus 88 ipqk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~ 167 (435)
T COG5191 88 IPQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLK 167 (435)
T ss_pred ccceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHh
Confidence 44567778899999999999999999999999999999999999999999999999988666654 47999999999999
Q ss_pred HhccCCCCcHHHHHHHHHHHHHh
Q 004187 342 LLTDSVNTTALAHIQFIRFLRRT 364 (770)
Q Consensus 342 al~~~p~~~~~~w~~~~~~~~r~ 364 (770)
+|..++. .+.+|+.|.+++...
T Consensus 168 glR~N~~-~p~iw~eyfr~El~y 189 (435)
T COG5191 168 GLRMNSR-SPRIWIEYFRMELMY 189 (435)
T ss_pred hhccCCC-CchHHHHHHHHHHHH
Confidence 9999998 789999999887653
No 146
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.14 E-value=0.0027 Score=62.43 Aligned_cols=216 Identities=18% Similarity=0.148 Sum_probs=165.1
Q ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 268 IFTYEQCLMYLYH--YPDIWYDYATWNAKSGSIDAAIKVFQRALK--ALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 268 ~~~ye~aL~~~p~--~~~~w~~~a~~l~~~g~~e~A~~v~erAi~--~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
...+..++...+. ........+..+...+++..+...+..++. ..+.....+...+.+....+++..+...+..++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (291)
T COG0457 43 LELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122 (291)
T ss_pred HHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455566655555 467888888889999999999999999997 678888889999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHH-HHHHhcCHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-
Q 004187 344 TDSVNTTALAHIQFIR-FLRRTEGVEAARKYFLDARKSPN---FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH- 418 (770)
Q Consensus 344 ~~~p~~~~~~w~~~~~-~~~r~~~~e~A~~~f~~Al~~~~---~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~- 418 (770)
...+. ....+..... .+...+.++.|...|++++...+ .....+......... .++.+.|...+.++++..+.
T Consensus 123 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 200 (291)
T COG0457 123 ALDPD-PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRYEEALELLEKALKLNPDD 200 (291)
T ss_pred cCCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHHHHHHHHHHhhCccc
Confidence 87766 2334444444 67788999999999999977543 223344444443333 48999999999999999988
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 419 EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 419 ~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
....+......+...++++.+...+..++...+. ....+..........|....+.....+..+..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6888888899999999999999999999998773 222333333332267778888888888888877
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=98.14 E-value=8.2e-05 Score=81.67 Aligned_cols=150 Identities=10% Similarity=0.002 Sum_probs=115.5
Q ss_pred hhhHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 004187 263 SNKRIIFTYEQCL---MYLYHYPDIWYDYATWNAKS---------GSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330 (770)
Q Consensus 263 ~~~r~~~~ye~aL---~~~p~~~~~w~~~a~~l~~~---------g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g 330 (770)
..+++..+|++|+ ..+|.+..+|..+|.++... ....+|+...++|++..|.+......+|......+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4577888999999 88999888887777777653 23567888999999999999998888888888888
Q ss_pred cHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCCHHHHHHHH
Q 004187 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM-AFCQDKDPKLAHNVF 409 (770)
Q Consensus 331 ~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~l-e~~~~g~~~~A~~if 409 (770)
+++.|...|++++..+|+ .+.+|+.++....-.|+.++|+..+++|++.+|....+-+-.-.+ .|+ ....+.|.++|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHHH
Confidence 899999999999999998 788898888888888899999999999888777543322222122 233 36777777777
Q ss_pred HHHHH
Q 004187 410 EAGLK 414 (770)
Q Consensus 410 e~alk 414 (770)
-+-.+
T Consensus 431 ~~~~~ 435 (458)
T PRK11906 431 YKETE 435 (458)
T ss_pred hhccc
Confidence 54443
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.12 E-value=4.3e-05 Score=69.25 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFT---YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE---PAYILEY 426 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~---~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~---~~~~l~y 426 (770)
+++..+..+.+.|++++|...|++++...+.. ..+++.++.+.+.. |+++.|..+|+.++..+|+. +.++...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34444444444455555555555544432221 23444444444442 55555555555555554442 3444455
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 427 ADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 427 a~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
+.++...|++++|..+|++++...|
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 5555555555555555555555444
No 149
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.11 E-value=0.00032 Score=70.84 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc--HHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHI 355 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~--~~~w~ 355 (770)
.++.++..|..+...|++.+|++.|++.+...|.+ ...++.+|..+...|+++.|...|++.++..|... ..+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45778899999999999999999999999999976 56677888888999999999999999999988742 22333
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH---------------
Q 004187 356 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP--------------- 420 (770)
Q Consensus 356 ~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~--------------- 420 (770)
..+...... ...++ .. ....+...+|...|+..++.+|+++
T Consensus 84 ~~g~~~~~~-----~~~~~------------------~~-~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 84 MLGLSYYKQ-----IPGIL------------------RS-DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR 139 (203)
T ss_dssp HHHHHHHHH-----HHHHH-------------------T-T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----Cccch------------------hc-ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH
Confidence 222211111 00000 00 0011334556666666666666642
Q ss_pred --HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhH-HHHHHHHHHHHHHcCCHH
Q 004187 421 --AYILEYADFLSRLNDDRNIRALFERALSSLPPEES-IEVWKRFTQFEQMYGDLD 473 (770)
Q Consensus 421 --~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~-~~lw~~~~~fE~~~Gd~~ 473 (770)
.--+.-++|+.+.|.+..|..-|+.+++..|.... .+.+..++.-....|...
T Consensus 140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 140 LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 11123467788888889999999999988884333 345555555555677765
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.09 E-value=7.5e-05 Score=79.55 Aligned_cols=165 Identities=15% Similarity=0.084 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-----CcHHH
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRALKALP--DS----EMLRYAFAELEESRGAIAAAKKLYESLLTDSVN-----TTALA 353 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi~~~P--~s----~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~-----~~~~~ 353 (770)
+...|..+...+++++|.+.|+++....- ++ ...+...+.++.+. ++++|..+|++++...-. .-..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445566666777777777777755321 11 22333444454443 778888888888764211 12356
Q ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHcC---CCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc-------
Q 004187 354 HIQFIRFLRRT-EGVEAARKYFLDARKS---PNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------- 419 (770)
Q Consensus 354 w~~~~~~~~r~-~~~e~A~~~f~~Al~~---~~~---~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~------- 419 (770)
+..++..+... ++++.|++.|++|++. ... ....+.+.|.+.... |++++|.++|++..+...++
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l-~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL-GRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhhcccccchhH
Confidence 67777777777 8888888888888753 111 245567777776665 89999999998888764331
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 420 PAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 420 ~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
..+++.-+-+++..||...|+..|++.....|
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 13555666677778888889999998887665
No 151
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.08 E-value=1.4e-05 Score=65.09 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=50.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 293 AKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 293 ~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
...|++++|++.|++++..+|++..+++.++.++...|++++|+.++++++...|+ ...+|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD-NPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT-HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-HHHHHHHHh
Confidence 46778888888888888888888888888888888888888888888888888876 455554443
No 152
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00023 Score=76.09 Aligned_cols=213 Identities=13% Similarity=-0.028 Sum_probs=143.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHH---------------HHHHhC---CCcHHHHHHHHHHHHHhCc
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQ---------------RALKAL---PDSEMLRYAFAELEESRGA 331 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~e---------------rAi~~~---P~s~~lw~~~a~~~~~~g~ 331 (770)
.+++.+...+..+......++++...++..+|...|+ +.+..+ |-....-+.-+.++.-.++
T Consensus 105 dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~ 184 (486)
T KOG0550|consen 105 DARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGD 184 (486)
T ss_pred chhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhccc
Confidence 4455666666666555556666655555554443332 222211 1122333445788888999
Q ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC------------HHHHHHHHHHHHhcC
Q 004187 332 IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT------------YHVYVAYALMAFCQD 399 (770)
Q Consensus 332 ~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~------------~~~yi~~a~le~~~~ 399 (770)
++.|.++--..++.++. +..+.+-.+..+...++.+.|..-|++++..++.. ..+|-.-+...++.
T Consensus 185 ~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~- 262 (486)
T KOG0550|consen 185 YDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN- 262 (486)
T ss_pred chhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc-
Confidence 99999999999999887 66676666777777899999999999999876542 34455556666774
Q ss_pred CCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 004187 400 KDPKLAHNVFEAGLKRFMHE----PAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDST 475 (770)
Q Consensus 400 g~~~~A~~ife~alk~~p~~----~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~ 475 (770)
|++..|.++|..+|...|++ ..++...+....++|+..+|..--+.|++..+ .-..-+.+-+.-...+++.+.+
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~--syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS--SYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 35677788888999999999999999998855 2223233333333334455555
Q ss_pred HHHHHHHHHhc
Q 004187 476 LKVEQRRKEAL 486 (770)
Q Consensus 476 ~k~~~R~~~~~ 486 (770)
...++.+.+.-
T Consensus 341 V~d~~~a~q~~ 351 (486)
T KOG0550|consen 341 VEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHhhc
Confidence 55444444433
No 153
>PRK11906 transcriptional regulator; Provisional
Probab=98.04 E-value=0.00025 Score=77.97 Aligned_cols=119 Identities=15% Similarity=0.037 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHh---------CcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc
Q 004187 298 IDAAIKVFQRAL---KALPDSEMLRYAFAELEESR---------GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE 365 (770)
Q Consensus 298 ~e~A~~v~erAi---~~~P~s~~lw~~~a~~~~~~---------g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~ 365 (770)
.+.|..+|.+|+ ...|+....+-.+|.++... .+..+|...-+++++.++. ++.+...++....-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 445666777777 66666655554444444322 1223444444555555544 3333333333333333
Q ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 366 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 366 ~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
+++.|..+|++|+..+|....+|...|.++... |+.++|++.++++++..|.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~-G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHN-EKIEEARICIDKSLQLEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCch
Confidence 455555555555554444444444444444332 5555555555555555444
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.03 E-value=0.00012 Score=76.66 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--cHHHH
Q 004187 281 YPDIWYDYATWN-AKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--TALAH 354 (770)
Q Consensus 281 ~~~~w~~~a~~l-~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~--~~~~w 354 (770)
....+|..|..+ ...|++++|+..|+..++..|++ ..+++.+|.++...|++++|...|+++++..|+. ..++|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457788888766 56789999999999999999988 4688888999999999999999999999877752 34555
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcCCCC
Q 004187 355 IQFIRFLRRTEGVEAARKYFLDARKSPNF 383 (770)
Q Consensus 355 ~~~~~~~~r~~~~e~A~~~f~~Al~~~~~ 383 (770)
+.++..+...|+.+.|+.+|+++++.-|.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 55555555556666666666666554443
No 155
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00014 Score=75.42 Aligned_cols=118 Identities=16% Similarity=0.087 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcC---HHHHHHHH
Q 004187 298 IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG---VEAARKYF 374 (770)
Q Consensus 298 ~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~---~e~A~~~f 374 (770)
.+....-++.-+..+|++.+-|..+|.+|..+|+++.|..-|.++++..++ +.+++..|+..+....+ ..+++.+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 445555666667777777777777777777777777777777777777766 56666666654443322 23455556
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 004187 375 LDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 417 (770)
Q Consensus 375 ~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p 417 (770)
+++++.++.+..+..-+|.-.+. .|++.+|...|+.+++..|
T Consensus 217 ~~al~~D~~~iral~lLA~~afe-~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFE-QGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcCC
Confidence 66655555444433333333233 2556666666665555543
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.02 E-value=0.00071 Score=70.26 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 280 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR---YAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 280 ~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw---~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
..++.++..|.-+...|++++|++.|++.+...|.+...- +.+|..+.+.+++++|...|++.++..|+.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 3567788888888999999999999999999999886543 667788888999999999999999998874
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.01 E-value=2.5e-05 Score=66.82 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 264 NKRIIFTYEQCLMYLYH--YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~--~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
++.++..|++++...|. +...|+.+|.++.+.|++++|..++++ ....+.+...++.+|.++.++|++++|+++|++
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 34444444444444442 233444444444444444444444444 334444444444444444444444444444443
No 158
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.0091 Score=68.74 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=114.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCcHHHHHHHHHHHHHhCcHHHHHHH
Q 004187 280 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKA---------------------LPDSEMLRYAFAELEESRGAIAAAKKL 338 (770)
Q Consensus 280 ~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~---------------------~P~s~~lw~~~a~~~~~~g~~e~A~~i 338 (770)
.++.+|--|++++++.|+.+.|+.+|+.|-.. ...+....+.+|+.|+..|++.+|...
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35578888888888888888888888776432 223445667778888888888888877
Q ss_pred HHHHhcc------CCCCcHHHHHHHHHHHHHh--cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHH-
Q 004187 339 YESLLTD------SVNTTALAHIQFIRFLRRT--EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVF- 409 (770)
Q Consensus 339 ye~al~~------~p~~~~~~w~~~~~~~~r~--~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~if- 409 (770)
|.++-.. +... +.--.++++.... .+.-.|-.+|++. ..|...|.++|...|-+.+|.++-
T Consensus 990 fTrAqafsnAIRlcKEn--d~~d~L~nlal~s~~~d~v~aArYyEe~--------g~~~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKEN--DMKDRLANLALMSGGSDLVSAARYYEEL--------GGYAHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred HHHHHHHHHHHHHHHhc--CHHHHHHHHHhhcCchhHHHHHHHHHHc--------chhhhHHHHHHHhhcchHHHHHHHH
Confidence 7665332 1110 1111222222222 2222333444432 234445555555456555554421
Q ss_pred --------HHHHH-hCC-CcHHHHHHHHHHHHhcCChhHHHHH------HHHHHhCCC----------------------
Q 004187 410 --------EAGLK-RFM-HEPAYILEYADFLSRLNDDRNIRAL------FERALSSLP---------------------- 451 (770)
Q Consensus 410 --------e~alk-~~p-~~~~~~l~ya~~l~~~g~~~~Ar~l------feraL~~~p---------------------- 451 (770)
+..-+ ..+ .+|.++...++|.....++++|..+ |++||+.+.
T Consensus 1060 ~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1060 RTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred hhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCc
Confidence 11111 123 3789999999999999999988765 456665321
Q ss_pred -chhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004187 452 -PEESIEVWKRFTQFEQMYGDLDSTLKVEQ 480 (770)
Q Consensus 452 -~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~ 480 (770)
......+....+++-.+.|++..+-|-+-
T Consensus 1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 12236788888888888999877766443
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.00 E-value=1.9e-05 Score=67.55 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=70.0
Q ss_pred cCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHH
Q 004187 295 SGSIDAAIKVFQRALKALPD--SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK 372 (770)
Q Consensus 295 ~g~~e~A~~v~erAi~~~P~--s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~ 372 (770)
+|+++.|+.+|++++...|. +...|+.+|.++.+.|++++|..++++ ++..+. ....++.+++.+...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999999999995 567788899999999999999999999 766665 56777788999999999999999
Q ss_pred HHHHH
Q 004187 373 YFLDA 377 (770)
Q Consensus 373 ~f~~A 377 (770)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99986
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.96 E-value=0.00012 Score=71.49 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
...|+..+..+...|++++|...|++++...|++ ..+|+.+|.++...|++++|...|++++...+. ....|..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 5688999999999999999999999999887764 458899999999999999999999999999887 567777777
Q ss_pred HHHHHhc
Q 004187 359 RFLRRTE 365 (770)
Q Consensus 359 ~~~~r~~ 365 (770)
..+...+
T Consensus 114 ~i~~~~~ 120 (168)
T CHL00033 114 VICHYRG 120 (168)
T ss_pred HHHHHhh
Confidence 7666433
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.0002 Score=78.96 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=45.3
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 004187 327 ESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAH 406 (770)
Q Consensus 327 ~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~ 406 (770)
...+.++.|.++|+++.+..|. +++.+++.+...++..+|.+++.++++..+.+..++...|.++... ++++.|.
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~~~~lAL 254 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-KKYELAL 254 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHH
Confidence 3334444444444444444432 2333333333333334444444444443333333333333333332 4444444
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHH
Q 004187 407 NVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRA 441 (770)
Q Consensus 407 ~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~ 441 (770)
++.+++++..|++-..|...+.+|..+|++++|..
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 44444444444444444444444444444444443
No 162
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.95 E-value=3.5e-05 Score=63.02 Aligned_cols=65 Identities=18% Similarity=0.109 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHHHcC
Q 004187 315 SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE-GVEAARKYFLDARKS 380 (770)
Q Consensus 315 s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~-~~e~A~~~f~~Al~~ 380 (770)
+...|+.+|.++...|++++|...|+++++.+|. ...+|+.++..+...+ ++++|+..|+++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3455666666666666666666666666666665 4556666666665555 456666666665543
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.92 E-value=0.00061 Score=78.31 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=112.8
Q ss_pred HHHHHhCCCcHHHHHHHHH--HHHHh---CcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh--------cCHHHHHH
Q 004187 306 QRALKALPDSEMLRYAFAE--LEESR---GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT--------EGVEAARK 372 (770)
Q Consensus 306 erAi~~~P~s~~lw~~~a~--~~~~~---g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~--------~~~e~A~~ 372 (770)
+++...-|.+...|-.|.. -+... ++.++|+.+|+++++.+|+ +..+|..++..+... .....+..
T Consensus 327 ~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 327 ERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3444556777777655533 23332 4478999999999999998 777776544322211 23456667
Q ss_pred HHHHHHcC--CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004187 373 YFLDARKS--PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSL 450 (770)
Q Consensus 373 ~f~~Al~~--~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~ 450 (770)
...+++.. .+....+|..+|.+.... |++++|...|++++...|+ ...|..++.++...|+.++|...|++|+...
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~-g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVK-GKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77776653 344567788777776664 9999999999999999994 7889999999999999999999999999988
Q ss_pred CchhHHHHHHHHHHHH
Q 004187 451 PPEESIEVWKRFTQFE 466 (770)
Q Consensus 451 p~~~~~~lw~~~~~fE 466 (770)
|. ...-.|..=+.|.
T Consensus 484 P~-~pt~~~~~~~~f~ 498 (517)
T PRK10153 484 PG-ENTLYWIENLVFQ 498 (517)
T ss_pred CC-CchHHHHHhcccc
Confidence 83 3344554444454
No 164
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00021 Score=78.69 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=85.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCH
Q 004187 288 YATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGV 367 (770)
Q Consensus 288 ~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~ 367 (770)
+..++...++++.|+++|++..+..|+ ++..+|.++...++..+|..+++++++..|. ...++...++|+...+++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 344555566777788888887777765 3444666666666777777778888877776 567777777777777888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004187 368 EAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFE 410 (770)
Q Consensus 368 e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife 410 (770)
+.|..+.++|++..|.....|..+|.++... |+++.|...+.
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~-~d~e~ALlaLN 292 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQL-GDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-CCHHHHHHHHh
Confidence 8888888888877777777787777776554 77777775554
No 165
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.90 E-value=0.0031 Score=62.02 Aligned_cols=186 Identities=19% Similarity=0.149 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHhCcHHHHHHHHHH
Q 004187 265 KRIIFTYEQCLM--YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAE-LEESRGAIAAAKKLYES 341 (770)
Q Consensus 265 ~r~~~~ye~aL~--~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~-~~~~~g~~e~A~~iye~ 341 (770)
......+..++. ..+.....+...+.+....+++..+.+.+..++...+.+...+..... ++...|+++.|...|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 155 (291)
T COG0457 76 EEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155 (291)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344556666665 678888999999999999999999999999999988877555555556 78889999999999999
Q ss_pred HhccCC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 342 LLTDSV--NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 342 al~~~p--~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~-~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
++...+ ......+..........++.+.|...+.+++...+. ....+...+...... ++.+.|...+..++...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL-GKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc-ccHHHHHHHHHHHHhhCcc
Confidence 988655 224455566666667788999999999999998776 466777777765554 7899999999999999988
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 419 EPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 419 ~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
....+......+...+..+++...+++++...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 235 NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 655555555555577789999999999999877
No 166
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.05 Score=57.44 Aligned_cols=87 Identities=17% Similarity=0.270 Sum_probs=51.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhc----CChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHH-
Q 004187 64 EAYMAVNNDDATKQLFSRCLLIC----LQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEY- 138 (770)
Q Consensus 64 ~~e~~~~~~~~a~~ifeRaL~~~----p~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~y- 138 (770)
+-.+...++..|+.+++-.+... .+.++|+.|+.|-.. +.+++.+.|.++.+. .++ .+.+|..+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLg--------dY~~Al~~Y~~~~~~--~~~-~~el~vnLA 98 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLG--------DYEEALNVYTFLMNK--DDA-PAELGVNLA 98 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhc--------cHHHHHHHHHHHhcc--CCC-CcccchhHH
Confidence 33445566777777666665443 246788888887653 356778888877663 232 34555443
Q ss_pred -HHHHhhCCcCchHHHHHHHHHHHHHHHHHHcccc
Q 004187 139 -ITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPT 172 (770)
Q Consensus 139 -i~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~ 172 (770)
..|.. +.+.+|..+-.+|-++|.
T Consensus 99 cc~FyL-----------g~Y~eA~~~~~ka~k~pL 122 (557)
T KOG3785|consen 99 CCKFYL-----------GQYIEAKSIAEKAPKTPL 122 (557)
T ss_pred HHHHHH-----------HHHHHHHHHHhhCCCChH
Confidence 34432 456666666667766664
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.88 E-value=6.8e-05 Score=60.57 Aligned_cols=59 Identities=27% Similarity=0.220 Sum_probs=34.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 392 ALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 392 a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
|..++.. |++++|+++|+.+++.+|+++.+|+.++.++..+|++++|..+|+++++..|
T Consensus 4 a~~~~~~-g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 4 ARALYQQ-GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHC-THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3333442 6666666666666666666666666666666666666666666666665554
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.88 E-value=0.00033 Score=68.75 Aligned_cols=98 Identities=9% Similarity=0.033 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 429 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~---~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~ 429 (770)
++..++..+...|++++|...|+++++..+. ...++..+|.+.... |++++|..+|+++++..|++...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN-GEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3344444444444455555555444432211 123444555544443 555555555555555555555555555555
Q ss_pred HHhcCC--------------hhHHHHHHHHHHhCCC
Q 004187 430 LSRLND--------------DRNIRALFERALSSLP 451 (770)
Q Consensus 430 l~~~g~--------------~~~Ar~lferaL~~~p 451 (770)
+..+|+ +++|..++++++...|
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 544443 4556666666666555
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00037 Score=68.07 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004187 351 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA 427 (770)
Q Consensus 351 ~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~---~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya 427 (770)
...|+..+..+...+++++|...|++++...+. ...+|.++|.++... |+.++|.+.|+++++..|.....+...+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN-GEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 345555555555556666666666666544222 123555555555553 6666666666666666666555555555
Q ss_pred HHHH-------hcCChh-------HHHHHHHHHHhCCC
Q 004187 428 DFLS-------RLNDDR-------NIRALFERALSSLP 451 (770)
Q Consensus 428 ~~l~-------~~g~~~-------~Ar~lferaL~~~p 451 (770)
.++. .+|+++ +|..+|++++...|
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5554 445544 44555555665555
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.83 E-value=9e-05 Score=61.27 Aligned_cols=60 Identities=23% Similarity=0.161 Sum_probs=54.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 289 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 289 a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
..++.+.+++++|++++++++..+|++..+|+.+|.++...|++++|...|+++++..|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 456788899999999999999999999999999999999999999999999999998887
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=5.8e-05 Score=61.46 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=57.7
Q ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 262 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAEL 325 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~ 325 (770)
+.++.++..|++++..+|++.++++.++.++...|++++|..++++++...|++..+|..++.+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 4567788999999999999999999999999999999999999999999999998888777653
No 172
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.79 E-value=5.1e-05 Score=56.28 Aligned_cols=43 Identities=30% Similarity=0.419 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAE 324 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~ 324 (770)
|++|+.+|.++...|++++|+++|+++++.+|++..+|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 5789999999999999999999999999999999999998875
No 173
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0004 Score=74.63 Aligned_cols=146 Identities=14% Similarity=0.100 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~ 364 (770)
.-.-+..+.+.|++..|..-|+||+......... +.++....-. + ...++.+++-.+...
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~------------~~ee~~~~~~--~------k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF------------DEEEQKKAEA--L------KLACHLNLAACYLKL 270 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC------------CHHHHHHHHH--H------HHHHhhHHHHHHHhh
Confidence 4456778889999999999999999865432111 0011111110 0 123556666666777
Q ss_pred cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCh-hHHHHHH
Q 004187 365 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD-RNIRALF 443 (770)
Q Consensus 365 ~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~-~~Ar~lf 443 (770)
+.+.+|+....+++...+.+..+..+.+..+... ++++.|+..|+++++..|+|..+-..++.+-.+..++ ++.+.+|
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLAL-GEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888877777777777777766664 7888888888888888888877777777776666554 3457788
Q ss_pred HHHHhCCC
Q 004187 444 ERALSSLP 451 (770)
Q Consensus 444 eraL~~~p 451 (770)
.+++..++
T Consensus 350 ~~mF~k~~ 357 (397)
T KOG0543|consen 350 ANMFAKLA 357 (397)
T ss_pred HHHhhccc
Confidence 88887654
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.77 E-value=0.00051 Score=62.88 Aligned_cols=97 Identities=21% Similarity=0.179 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--cHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--TALAHIQF 357 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~--~~~~w~~~ 357 (770)
.++++.|..+...|+.++|+.+|++++...... ..+++.++..+...|++++|..++++++...|++ ...++..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 567777777888888888888888887764433 4566777777777788888888887777765542 23455555
Q ss_pred HHHHHHhcCHHHHHHHHHHHHc
Q 004187 358 IRFLRRTEGVEAARKYFLDARK 379 (770)
Q Consensus 358 ~~~~~r~~~~e~A~~~f~~Al~ 379 (770)
+..+...|+.++|..++-.++-
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666777777777666553
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.75 E-value=0.0008 Score=70.51 Aligned_cols=105 Identities=12% Similarity=0.098 Sum_probs=78.9
Q ss_pred HHHHHHHHHHH-HHhCcHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC---CCHHHHH
Q 004187 316 EMLRYAFAELE-ESRGAIAAAKKLYESLLTDSVNTT--ALAHIQFIRFLRRTEGVEAARKYFLDARKSPN---FTYHVYV 389 (770)
Q Consensus 316 ~~lw~~~a~~~-~~~g~~e~A~~iye~al~~~p~~~--~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~---~~~~~yi 389 (770)
...++..|..+ ...|++++|...|+++++..|+.. ..+++.++..+...|++++|+..|+++++.-+ ...++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555544 456889999999999999888732 46888888888888888888888888886433 3467777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHH
Q 004187 390 AYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 421 (770)
Q Consensus 390 ~~a~le~~~~g~~~~A~~ife~alk~~p~~~~ 421 (770)
..+.+.... |+.+.|+++|+++++.+|++..
T Consensus 222 klg~~~~~~-g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDK-GDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHCcCCHH
Confidence 777776664 8888888888888888888654
No 176
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.73 E-value=0.097 Score=65.20 Aligned_cols=225 Identities=12% Similarity=0.024 Sum_probs=153.1
Q ss_pred hhhHHHHHHHHHHHHcCC----C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYH----Y--PDIWYDYATWNAKSGSIDAAIKVFQRALKALPD--------SEMLRYAFAELEES 328 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~----~--~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~--------s~~lw~~~a~~~~~ 328 (770)
..+.+...+++++..... + ..++..++..+...|++++|...+++++..... ...++..++.++..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 345667778888864322 1 134566788889999999999999999885321 22345566778888
Q ss_pred hCcHHHHHHHHHHHhccCCC----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC---CCC--HHHHHHH-HHHHHhc
Q 004187 329 RGAIAAAKKLYESLLTDSVN----TTALAHIQFIRFLRRTEGVEAARKYFLDARKSP---NFT--YHVYVAY-ALMAFCQ 398 (770)
Q Consensus 329 ~g~~e~A~~iye~al~~~p~----~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~---~~~--~~~yi~~-a~le~~~ 398 (770)
.|++++|...+++++..... .....+..++......|+++.|...+.++.... ... +...... ....+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 89999999999998865321 123455567778888999999999999986531 111 1111111 1111223
Q ss_pred CCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHHcC
Q 004187 399 DKDPKLAHNVFEAGLKRFMHEP----AYILEYADFLSRLNDDRNIRALFERALSSLPP----EESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 399 ~g~~~~A~~ife~alk~~p~~~----~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~----~~~~~lw~~~~~fE~~~G 470 (770)
.|+.+.|...+........... ..+...+..+...|++++|..+|++++..... .....+...++......|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 5889999888766554322221 23457788888999999999999999975321 122345555666777889
Q ss_pred CHHHHHHHHHHHHHhcc
Q 004187 471 DLDSTLKVEQRRKEALS 487 (770)
Q Consensus 471 d~~~~~k~~~R~~~~~~ 487 (770)
+.+.+...+.++.+...
T Consensus 746 ~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 746 RKSEAQRVLLEALKLAN 762 (903)
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999999886
No 177
>PRK15331 chaperone protein SicA; Provisional
Probab=97.67 E-value=0.00088 Score=63.95 Aligned_cols=100 Identities=16% Similarity=-0.006 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
-+..|.+|--+...|++++|..+|.-.....|.+...|+.+|.++...+++++|...|..+....++ ++...+..+..+
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~ 115 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHH
Confidence 3566777888889999999999999999999999999999999999999999999999999887765 445567778888
Q ss_pred HHhcCHHHHHHHHHHHHcCCC
Q 004187 362 RRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al~~~~ 382 (770)
...++.+.|+..|+.++..+.
T Consensus 116 l~l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 116 LLMRKAAKARQCFELVNERTE 136 (165)
T ss_pred HHhCCHHHHHHHHHHHHhCcc
Confidence 889999999999999998543
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.0089 Score=62.11 Aligned_cols=168 Identities=13% Similarity=0.057 Sum_probs=117.7
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC---HHHHH
Q 004187 315 SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT---YHVYV 389 (770)
Q Consensus 315 s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~--~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~---~~~yi 389 (770)
+...++..|.-....|++++|.+.|++++...|... ..+.+.++..+.+.++++.|+..|++.++..|.+ ..++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 455667777778889999999999999999998742 2344667777888999999999999999875543 33445
Q ss_pred HHHHHHHhc--------------CCC---HHHHHHHHHHHHHhCCCcHH---H--H------------HHHHHHHHhcCC
Q 004187 390 AYALMAFCQ--------------DKD---PKLAHNVFEAGLKRFMHEPA---Y--I------------LEYADFLSRLND 435 (770)
Q Consensus 390 ~~a~le~~~--------------~g~---~~~A~~ife~alk~~p~~~~---~--~------------l~ya~~l~~~g~ 435 (770)
..|...... ..| ...|.+.|+..++.+|++.- . . +.-+.|+.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 555432111 012 34677999999999999631 1 1 133467778889
Q ss_pred hhHHHHHHHHHHhCCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004187 436 DRNIRALFERALSSLPPEES-IEVWKRFTQFEQMYGDLDSTLKVEQRR 482 (770)
Q Consensus 436 ~~~Ar~lferaL~~~p~~~~-~~lw~~~~~fE~~~Gd~~~~~k~~~R~ 482 (770)
+.-|..-|+.++...|.... .+.....+.-....|..+.+.++.+..
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999998884332 344444445555678887777665544
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.0017 Score=69.13 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC-----CCcHHHHHHHHHHHHHhcCHHHHH
Q 004187 297 SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV-----NTTALAHIQFIRFLRRTEGVEAAR 371 (770)
Q Consensus 297 ~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p-----~~~~~~w~~~~~~~~r~~~~e~A~ 371 (770)
++++|...|++| |..+...+++++|.+.|.++..... ..-...|...+..+.+. +++.|.
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 566666666654 4444555666666666666543211 11234555555565544 899999
Q ss_pred HHHHHHHcC----CC--CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHhcCChhHH
Q 004187 372 KYFLDARKS----PN--FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--E----PAYILEYADFLSRLNDDRNI 439 (770)
Q Consensus 372 ~~f~~Al~~----~~--~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~--~----~~~~l~ya~~l~~~g~~~~A 439 (770)
.+|++|+.. +. .-..++..+|.++....|+++.|.+.|+++++.+.. . ...+...+.++..+|++++|
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 999999853 21 124567778887544228999999999999997522 2 35678899999999999999
Q ss_pred HHHHHHHHhCCCc-----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 440 RALFERALSSLPP-----EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 440 r~lferaL~~~p~-----~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..+|+++....-. ......+...+......||...+.+.+.+.....|
T Consensus 175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999875321 12234555555566678999999999999888776
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.01 Score=57.32 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004187 298 IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDA 377 (770)
Q Consensus 298 ~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~A 377 (770)
++....-..+.+...|+... .+.++......|++.+|+..|++++.-.-.....+...+++.....+++..|...+++.
T Consensus 72 P~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 72 PERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 33333333344444454432 44566666777777788888877776433334566667777777777777777777777
Q ss_pred HcCCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHH----HHHHHHHHhCCC
Q 004187 378 RKSPNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNI----RALFERALSSLP 451 (770)
Q Consensus 378 l~~~~~--~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~A----r~lferaL~~~p 451 (770)
.+.++. +.+..+.++..+... |.+..|+..||-++...|+ +.....|+.|+..+|...++ +.+++++.+..|
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa~-g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAAQ-GKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHhc-CCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcch
Confidence 765432 234445555555554 8888899999999988876 46666788999998865444 466777776544
Q ss_pred -chhHHHHHHHHH
Q 004187 452 -PEESIEVWKRFT 463 (770)
Q Consensus 452 -~~~~~~lw~~~~ 463 (770)
-.++..=|..++
T Consensus 229 H~rkh~reW~~~A 241 (251)
T COG4700 229 HYRKHHREWIKTA 241 (251)
T ss_pred hHHHHHHHHHHHH
Confidence 123344455544
No 181
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.65 E-value=0.0046 Score=61.04 Aligned_cols=195 Identities=15% Similarity=0.119 Sum_probs=137.0
Q ss_pred chhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 261 ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 261 ~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
.+...-++..|.++|...|..++++.-++.++...|+++.|.+.|...++..|.........+..+.-.|++.-|.+-+.
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 34555667789999999999999999999999999999999999999999999988777766655555688888888887
Q ss_pred HHhccCCCCc-HHHHHHHHHHHHHhcCHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 341 SLLTDSVNTT-ALAHIQFIRFLRRTEGVEAARKY-FLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 341 ~al~~~p~~~-~~~w~~~~~~~~r~~~~e~A~~~-f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
+.-+.+|.++ ..+|..+. .+.-++.+|+.- .+|+.+.+...|. +-.+.+.. |.+.+ ..+++++..--.+
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG----~~iV~~yL-gkiS~-e~l~~~~~a~a~~ 228 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWG----WNIVEFYL-GKISE-ETLMERLKADATD 228 (297)
T ss_pred HHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhh----HHHHHHHH-hhccH-HHHHHHHHhhccc
Confidence 7777777642 34565443 334566666654 5677776554332 22234444 55542 3455555544334
Q ss_pred cH-------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Q 004187 419 EP-------AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQ 467 (770)
Q Consensus 419 ~~-------~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~ 467 (770)
+. +.+...+..+...|+.++|..+|.-|+... -..-+=.+|+.||.
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann---VynfVE~RyA~~EL 281 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN---VYNFVEHRYALLEL 281 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence 32 344455667778899999999999999752 22345567777775
No 182
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.65 E-value=0.00064 Score=74.75 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=66.2
Q ss_pred HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 004187 277 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEM---LRYAFAELEESRGAIAAAKKLYESLLTDS 346 (770)
Q Consensus 277 ~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~---lw~~~a~~~~~~g~~e~A~~iye~al~~~ 346 (770)
.+|.++..|++++..|...|++++|+..|++|++.+|++.. .|+.+|.+|..+|++++|...|+++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999985 49999999999999999999999999973
No 183
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.034 Score=64.25 Aligned_cols=97 Identities=27% Similarity=0.379 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCCc----------HHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRA----------LKALPDS----------EMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erA----------i~~~P~s----------~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
-..|++||..+...++++.|++.||++ +..+|.. ..||-=++.+++..|+.|.|..+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 457899999999999999999999985 3445543 45666789999999999999999988
Q ss_pred HhccCCC--------------------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004187 342 LLTDSVN--------------------TTALAHIQFIRFLRRTEGVEAARKYFLDAR 378 (770)
Q Consensus 342 al~~~p~--------------------~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al 378 (770)
+-....- .+..+-+.+++.+...|++.+|..+|.+|.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7543210 123456778888888888889988888875
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.62 E-value=0.001 Score=60.86 Aligned_cols=95 Identities=16% Similarity=0.016 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH---EPAYILEY 426 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~---~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~---~~~~~l~y 426 (770)
+++..+..+...|+.++|+.+|++++..... ...+++.++..+... |++++|..+++.++..+|+ +..+...+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 3444444455555555555555555553211 234555555554443 6666666666666666666 55555566
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 004187 427 ADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 427 a~~l~~~g~~~~Ar~lferaL~ 448 (770)
+..+...|+.++|...+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666655554
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.60 E-value=0.0076 Score=60.85 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHH--------
Q 004187 263 SNKRIIFTYEQCLMYLYHY---PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE---MLRYAFAELEES-------- 328 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~---~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~---~lw~~~a~~~~~-------- 328 (770)
.+..++..|++.+...|.+ +++++.+|..+...|++++|+..|++.++..|++. .+++..|..+..
T Consensus 20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~ 99 (203)
T PF13525_consen 20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRS 99 (203)
T ss_dssp -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhc
Confidence 4677888999999988865 57899999999999999999999999999999874 344444444332
Q ss_pred ---hCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHH
Q 004187 329 ---RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLA 405 (770)
Q Consensus 329 ---~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A 405 (770)
.+...+|...|+.++...|+.. - ...|......+... ...--+..|.+.++ .|.+..|
T Consensus 100 ~~D~~~~~~A~~~~~~li~~yP~S~-y--------------~~~A~~~l~~l~~~---la~~e~~ia~~Y~~-~~~y~aA 160 (203)
T PF13525_consen 100 DRDQTSTRKAIEEFEELIKRYPNSE-Y--------------AEEAKKRLAELRNR---LAEHELYIARFYYK-RGKYKAA 160 (203)
T ss_dssp T---HHHHHHHHHHHHHHHH-TTST-T--------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHC-TT-HHHH
T ss_pred ccChHHHHHHHHHHHHHHHHCcCch-H--------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cccHHHH
Confidence 2334578888888888888731 1 11121111111110 01112234555555 4899999
Q ss_pred HHHHHHHHHhCCCcH---HHHHHHHHHHHhcCChhHHH
Q 004187 406 HNVFEAGLKRFMHEP---AYILEYADFLSRLNDDRNIR 440 (770)
Q Consensus 406 ~~ife~alk~~p~~~---~~~l~ya~~l~~~g~~~~Ar 440 (770)
..-|+.+++.+|+.+ +.+...+..+.++|..+.+.
T Consensus 161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999965 45666677777788766443
No 186
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.044 Score=56.05 Aligned_cols=166 Identities=14% Similarity=0.065 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 004187 267 IIFTYEQCLMYLYHYPDI-WYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 267 ~~~~ye~aL~~~p~~~~~-w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~ 345 (770)
+-.++|......-.+-.+ ...-|.++...+++++|.+...+. .+.++.-.=..++.+...++-|++..+++...
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344667666655555544 455567788889999998888763 23333333334556677788889999888887
Q ss_pred CCCC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHH
Q 004187 346 SVNT----TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 421 (770)
Q Consensus 346 ~p~~----~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~ 421 (770)
+.+. .+.+|+. +..-.+.+..|--+|++.-+..+.++......|.+.... +++++|..+++.+|.+.+++|+
T Consensus 167 ded~tLtQLA~awv~---la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVK---LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred chHHHHHHHHHHHHH---HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhccCCCHH
Confidence 7652 1234443 334445688899999999987777788888888876664 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHH
Q 004187 422 YILEYADFLSRLNDDRNIRA 441 (770)
Q Consensus 422 ~~l~ya~~l~~~g~~~~Ar~ 441 (770)
.+.+.+-.-...|.+.++..
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred HHHHHHHHHHHhCCChHHHH
Confidence 99999998888997766543
No 187
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0012 Score=71.03 Aligned_cols=144 Identities=17% Similarity=0.077 Sum_probs=107.4
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 004187 322 FAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD 401 (770)
Q Consensus 322 ~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~ 401 (770)
.+..+.+.|++..|...|++++..-... +.-+.++.... ..+ ...+++++|....+. ++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~-------------~~~~~ee~~~~-~~~------k~~~~lNlA~c~lKl-~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYR-------------RSFDEEEQKKA-EAL------KLACHLNLAACYLKL-KE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhcc-------------ccCCHHHHHHH-HHH------HHHHhhHHHHHHHhh-hh
Confidence 4566778888999999999887643320 00011111111 111 134567777776675 89
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHH-HHHHHH
Q 004187 402 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDS-TLKVEQ 480 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~-~~k~~~ 480 (770)
+..|.+..+++|...|++...++..+..+..+|+++.||..|++|++..| .+..+-..++.+-.++-.... -.+.++
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P--~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP--SNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 556777777777666655544 467899
Q ss_pred HHHHhccc
Q 004187 481 RRKEALSR 488 (770)
Q Consensus 481 R~~~~~~~ 488 (770)
+++..+..
T Consensus 351 ~mF~k~~~ 358 (397)
T KOG0543|consen 351 NMFAKLAE 358 (397)
T ss_pred HHhhcccc
Confidence 99998883
No 188
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.48 E-value=0.0018 Score=60.00 Aligned_cols=93 Identities=19% Similarity=0.367 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcC-CCCCCcchhhhHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004187 241 WIAWKRLLTFEKGN-PQRIDTASSNKRIIFTYEQCLMYLYHY---------PDIWYDYATWNAKSGSIDAAIKVFQRALK 310 (770)
Q Consensus 241 ~~lw~~yi~~ek~n-~~~ld~~~~~~r~~~~ye~aL~~~p~~---------~~~w~~~a~~l~~~g~~e~A~~v~erAi~ 310 (770)
++.|.+||.|...+ |. . .....+..++++|+..+.++ ..+|+.||.+.. .+.++|.....
T Consensus 22 L~~w~~yI~w~~~~~p~-~---~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~ 91 (126)
T PF08311_consen 22 LDPWLRYIKWIEENYPS-G---GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYS 91 (126)
T ss_dssp HHHHHHHHHHHHHHCTT-C---CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCC-C---CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHH
Confidence 57999999997643 43 1 23455667899999876543 368888887543 78888888877
Q ss_pred h--CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 311 A--LPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 311 ~--~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
. .-..+.+|..+|.+++..|++++|.++|+.+|
T Consensus 92 ~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 92 KGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4 35678899999999999999999999998765
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.46 E-value=0.00051 Score=56.72 Aligned_cols=54 Identities=28% Similarity=0.252 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004187 399 DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPP 452 (770)
Q Consensus 399 ~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~ 452 (770)
.+++++|.++++++++.+|+++.+|..++.++..+|++.+|+..|+++++..|.
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 489999999999999999999999999999999999999999999999988883
No 190
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.019 Score=60.47 Aligned_cols=141 Identities=12% Similarity=0.064 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-----------C
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN-----------T 349 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~-----------~ 349 (770)
+.+.|+.++ +...|++++|..+|+-+....--+.++|..+|-+.--+|.+.+|..+-+++-+..-. .
T Consensus 58 ~~~lWia~C--~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 58 SLQLWIAHC--YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHH--HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 456787665 556789999999999998876667889999988888889999998887776432100 0
Q ss_pred cHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 350 TALAH--------------IQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 350 ~~~~w--------------~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
+..-| ..++......-++.+|+++|++.+.+++....+-+.+|.+.|+. .-++.+.+++.--+..
T Consensus 136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKl-DYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKL-DYYDVSQEVLKVYLRQ 214 (557)
T ss_pred cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhc-chhhhHHHHHHHHHHh
Confidence 00011 11111111123467788888888877766444444455565664 5677777777777778
Q ss_pred CCCcHHHHH
Q 004187 416 FMHEPAYIL 424 (770)
Q Consensus 416 ~p~~~~~~l 424 (770)
+|+++-...
T Consensus 215 ~pdStiA~N 223 (557)
T KOG3785|consen 215 FPDSTIAKN 223 (557)
T ss_pred CCCcHHHHH
Confidence 888765543
No 191
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.44 E-value=0.017 Score=71.98 Aligned_cols=206 Identities=14% Similarity=0.103 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----c----HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD-----S----EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA 351 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~-----s----~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~ 351 (770)
++.+....+.++...|++++|...++++....+. . ..+....+.++...|++++|...+++++...+....
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 4555566777777889999999999998776432 1 223334566677889999999999999875443221
Q ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC----C--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC---
Q 004187 352 ----LAHIQFIRFLRRTEGVEAARKYFLDARKSPN----F--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--- 418 (770)
Q Consensus 352 ----~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~----~--~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~--- 418 (770)
.++..++..+...|+++.|+..+.+++.... . ...++...+.+.+. .|+++.|...+++++.....
T Consensus 488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhcc
Confidence 2345566667778999999999999885311 1 12244455666666 49999999999999885211
Q ss_pred --c---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 419 --E---PAYILEYADFLSRLNDDRNIRALFERALSSLP---PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 419 --~---~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p---~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
. ..++...+..+...|++++|+..+++++.... .......+...+.+....|+.+.+...+.++.....
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 1 12334556777888999999999999987532 122334444456667788999999988888877654
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.016 Score=55.94 Aligned_cols=134 Identities=21% Similarity=0.156 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-cHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALK-ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-TALAHIQFIRF 360 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~-~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~-~~~~w~~~~~~ 360 (770)
.-.+.++..+.+.|+..+|...|++++. ..-++..+.+.++......+++..|...++++.+.+|.. .++-...+++.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 4577889999999999999999999998 466888888889998888999999999999999987752 34667788888
Q ss_pred HHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHH----HHHHHHHhCCC
Q 004187 361 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN----VFEAGLKRFMH 418 (770)
Q Consensus 361 ~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~----ife~alk~~p~ 418 (770)
+.-.|.++.|+..|+.++..-+. ...-+.++.++.++ |+.++|+. +++.+.+..|+
T Consensus 170 laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~q-gr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQ-GRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhcchh
Confidence 88899999999999999987654 67777788887775 76666554 55555554444
No 193
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.005 Score=63.36 Aligned_cols=179 Identities=14% Similarity=0.030 Sum_probs=106.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHH
Q 004187 293 AKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK 372 (770)
Q Consensus 293 ~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~ 372 (770)
++..+++.|++++.--.+..|.+......++.+|....++..|..+|+++....|. ...-.+.+++.+...+.+..|..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE-LEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHHHHHhcccHHHHH
Confidence 44456677777777777777777776777777777777777777777777777765 44445556666666677777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004187 373 YFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM--HEPAYILEYADFLSRLNDDRNIRALFERALSSL 450 (770)
Q Consensus 373 ~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p--~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~ 450 (770)
+.......+.....+.---+.+.|.. +|+-.++.+.+ ..| ++++.....+-++.+.|+++.|.+-|+.|++.-
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse-~Dl~g~rsLve----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSE-GDLPGSRSLVE----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhccc-ccCcchHHHHH----hccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 76666554322122221123333443 66655555433 333 345556666666667777777777777777643
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004187 451 PPEESIEVWKRFTQFEQMYGDLDSTLKVE 479 (770)
Q Consensus 451 p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~ 479 (770)
. -...+-+..+....+.|+.+++.+.-
T Consensus 175 G--yqpllAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 175 G--YQPLLAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred C--CCchhHHHHHHHHHhhhhHHHHHHHH
Confidence 2 22233444444444566666665543
No 194
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.37 E-value=0.057 Score=63.42 Aligned_cols=218 Identities=13% Similarity=0.064 Sum_probs=149.3
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
.++.+.....+.+...|+.+-+-..-|-.+.+.|+.++|..++|-.-..-+++....-.+-.+|...++.++|..+|+++
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~ 103 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERA 103 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45666777888888999999888888999999999999997776554455666666667788999999999999999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhcCHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--------CHHHHHHHHH
Q 004187 343 LTDSVNTTALAHIQFIRFLRRTEGVE----AARKYFLDARKSPNFTYHVYVAYALMAFCQDK--------DPKLAHNVFE 410 (770)
Q Consensus 343 l~~~p~~~~~~w~~~~~~~~r~~~~e----~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g--------~~~~A~~ife 410 (770)
+...|. .....++-..+.|.+.+. .|.++|+.+-+. .+-.|.-+..+.....+ -.--|.+.++
T Consensus 104 ~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~---~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 104 NQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR---AYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc---cchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 999997 445555555556655554 456666633222 23334444333322111 1223566777
Q ss_pred HHHHhCC---CcHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 411 AGLKRFM---HEPAYILEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 411 ~alk~~p---~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~-~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
+.++..+ ...++ .-|...+..+|++++|..++..-+. .++ .-+..+-..-..+-...+.......+..|...+-
T Consensus 179 ~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~eal~~l~~~la~~l~-~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEI-ILYLLILELQGKYQEALEFLAITLAEKLT-SANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhccCCccchHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 7776652 12333 4577788899999999999966554 333 2334444555666667788888888888888877
Q ss_pred c
Q 004187 487 S 487 (770)
Q Consensus 487 ~ 487 (770)
+
T Consensus 257 ~ 257 (932)
T KOG2053|consen 257 N 257 (932)
T ss_pred C
Confidence 6
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.34 E-value=0.036 Score=56.75 Aligned_cols=182 Identities=14% Similarity=0.103 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE---MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 357 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~---~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~ 357 (770)
.+..|+.-+.-..+.|++++|.+.|+.....+|.+. ...+.++-.+.+.++++.|+...++.+...|....--|..|
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 456788888888999999999999999999988764 45556666677889999999999999999987554556666
Q ss_pred HHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH-----------------
Q 004187 358 IRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP----------------- 420 (770)
Q Consensus 358 ~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~----------------- 420 (770)
+..+.....+ .....+ +.-...|..-|+..+.++|++.
T Consensus 113 lkgLs~~~~i-----------~~~~rD--------------q~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA 167 (254)
T COG4105 113 LKGLSYFFQI-----------DDVTRD--------------QSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALA 167 (254)
T ss_pred HHHHHHhccC-----------CccccC--------------HHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHH
Confidence 6554421110 000000 0111233444445555555531
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 421 AYILEYADFLSRLNDDRNIRALFERALSSLPPEES-IEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 421 ~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~-~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..=+.-++|+.+.|.+..|..-++++++..+.+.+ .+-...+.......|-.+.+.+..+-+....|
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 11123457888899999999999999998774332 34445555555578888888887777666666
No 196
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.33 E-value=0.0028 Score=57.50 Aligned_cols=96 Identities=22% Similarity=0.131 Sum_probs=84.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHHh
Q 004187 288 YATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT---TALAHIQFIRFLRRT 364 (770)
Q Consensus 288 ~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~---~~~~w~~~~~~~~r~ 364 (770)
-+..+...|+.+.|++.|.+++..+|.....+...|..+.-.|+.++|.+-++++++..... ...++++.+.+++..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 35567778999999999999999999999999999999999999999999999999875542 236788999999999
Q ss_pred cCHHHHHHHHHHHHcCCCC
Q 004187 365 EGVEAARKYFLDARKSPNF 383 (770)
Q Consensus 365 ~~~e~A~~~f~~Al~~~~~ 383 (770)
|+.+.||.-|+.|.+.+..
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 9999999999999887665
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.32 E-value=0.0018 Score=61.91 Aligned_cols=97 Identities=8% Similarity=0.014 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 431 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~ 431 (770)
+..+.++.-...+|++++|..+|.-....++.+.+.|+.+|...... |++++|...|-.+....+++|.....-++++.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~-k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK-KQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 34455555556677777777777777776666677777777765554 77888888888887777777777777778888
Q ss_pred hcCChhHHHHHHHHHHhC
Q 004187 432 RLNDDRNIRALFERALSS 449 (770)
Q Consensus 432 ~~g~~~~Ar~lferaL~~ 449 (770)
.+|+.++|+..|+.++..
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 888888888888888774
No 198
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.015 Score=59.95 Aligned_cols=179 Identities=12% Similarity=0.011 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
..++.+...-.+..|.+-.....++-+|....++..|...|++.....|+-....+-+|.-+.+.+.+.+|..+...+..
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 34455666666677877778888888888888999999999999999999988888888888888888888888766544
Q ss_pred cCCCCcHHHHHHHH----HHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 345 DSVNTTALAHIQFI----RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 345 ~~p~~~~~~w~~~~----~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
. + .+...-. ......+++..++.+.++.-.. .+..+.++.+-+.|+. |+++.|.+-|..+++..+-++
T Consensus 107 ~-~----~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllyke-gqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 107 N-P----ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKE-GQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred C-H----HHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchheeecc-ccHHHHHHHHHHHHhhcCCCc
Confidence 2 2 2222221 2233457777888888775432 3467788888888885 999999999999999887788
Q ss_pred HHHHHHHHHHHhcCChhHHH----HHHHHHHhCCC
Q 004187 421 AYILEYADFLSRLNDDRNIR----ALFERALSSLP 451 (770)
Q Consensus 421 ~~~l~ya~~l~~~g~~~~Ar----~lferaL~~~p 451 (770)
-+-++.+-.+.+.+++..|. ++.+|.++..|
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 88778888888888887776 46677777766
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.0059 Score=62.89 Aligned_cols=107 Identities=20% Similarity=0.167 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRALKALPDSE---MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~---~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
.|+.|--+...|++..|.+.|..-++..|++. ..+|-|+.++..+|+++.|..+|.++.+..|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence 44445556666777777777777777777652 33444566666666666666666666665554
Q ss_pred HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 004187 362 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l 424 (770)
.+.-.+.+++++.++... |+.++|+.+|+..++.+|+.+....
T Consensus 211 -------------------s~KApdallKlg~~~~~l-~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 211 -------------------SPKAPDALLKLGVSLGRL-GNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred -------------------CCCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 222356666677666664 7777777777777777777654443
No 200
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.26 E-value=0.01 Score=65.52 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------------------------HHHHHH
Q 004187 268 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE-------------------------MLRYAF 322 (770)
Q Consensus 268 ~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~-------------------------~lw~~~ 322 (770)
+.+-.+||..+|+..++|..+|+ +....+.+|.++|++|++....+. .+...+
T Consensus 188 IkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRL 265 (539)
T PF04184_consen 188 IKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRL 265 (539)
T ss_pred HHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHH
Confidence 45778899999999999988774 334467889999999987632110 112245
Q ss_pred HHHHHHhCcHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004187 323 AELEESRGAIAAAKKLYESLLTDSVN-TTALAHIQFIRFLRRTEGVEAARKYFLDA 377 (770)
Q Consensus 323 a~~~~~~g~~e~A~~iye~al~~~p~-~~~~~w~~~~~~~~r~~~~e~A~~~f~~A 377 (770)
|.+..+.|+.++|.+.|..+++..|. +...++..+...+...+.+.++..++.+-
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 55666666666666666666665543 23345556666666666666666666553
No 201
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.058 Score=55.21 Aligned_cols=193 Identities=13% Similarity=0.059 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCcHHHHH-HHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAI-KVFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 360 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~-~v~erAi~~~P~s~~lw~-~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~ 360 (770)
.+...++.++...++.++-+ ++++......-.+..+|. .-|.++...+++++|.+...+... .++...-.+.
T Consensus 73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~------lE~~Al~VqI 146 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN------LEAAALNVQI 146 (299)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch------HHHHHHHHHH
Confidence 34455666666655544443 455555555555554554 446778889999999998876322 2333333445
Q ss_pred HHHhcCHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 004187 361 LRRTEGVEAARKYFLDARKSPNFT-----YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLND 435 (770)
Q Consensus 361 ~~r~~~~e~A~~~f~~Al~~~~~~-----~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~ 435 (770)
..+..+++-|++..+++.+.+... ..+|+++|. ..+.+..|.-||+..-.+++..+.+....+.+.+.+++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~----ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLAT----GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhc----cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 567778899999999998876542 344555443 23568899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhcc
Q 004187 436 DRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLD-STLKVEQRRKEALS 487 (770)
Q Consensus 436 ~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~-~~~k~~~R~~~~~~ 487 (770)
+++|-.+++.+|...+ +..+.....+..-...|..+ ...+...+.+..-|
T Consensus 223 ~eeAe~lL~eaL~kd~--~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDA--KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 9999999999999876 55677777777777777553 33344444444443
No 202
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.20 E-value=0.00038 Score=46.91 Aligned_cols=30 Identities=23% Similarity=0.514 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 004187 71 NDDATKQLFSRCLLICLQVPLWRCYIRFIR 100 (770)
Q Consensus 71 ~~~~a~~ifeRaL~~~p~~~lW~~y~~~~~ 100 (770)
.++.|+.||+|.+..+|++..|+.|++|+.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHhhc
Confidence 467888888888888888888888888874
No 203
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.16 E-value=0.0093 Score=55.77 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 357 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~ 357 (770)
.+..++.-|.-..+.|++++|++.|+......|.+ ....+.++..+.+.+++++|...+++.++.+|....--|..|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678888889999999999999999999999865 455566777778899999999999999999997422223333
Q ss_pred HHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHH
Q 004187 358 IRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 421 (770)
Q Consensus 358 ~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~ 421 (770)
+.-+..... ....|......... .+....|..-|+..++.+|++.-
T Consensus 89 ~~gL~~~~~---~~~~~~~~~~~drD---------------~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYYEQ---DEGSLQSFFRSDRD---------------PTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHH---hhhHHhhhcccccC---------------cHHHHHHHHHHHHHHHHCcCChh
Confidence 322221111 11222222211111 24456788899999999999753
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.065 Score=54.60 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=120.9
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC----CC--CHHHHHHHHH
Q 004187 320 YAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP----NF--TYHVYVAYAL 393 (770)
Q Consensus 320 ~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~----~~--~~~~yi~~a~ 393 (770)
+.|+.++...|+|.-....|.+.++.+|...+.+-..++....+.|+.+.|...|++.-+.. .. ...+..+.+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 46778888889999999999999998876677788899999999999999999999765432 11 2334555555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHHcCC
Q 004187 394 MAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPE--ESIEVWKRFTQFEQMYGD 471 (770)
Q Consensus 394 le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~--~~~~lw~~~~~fE~~~Gd 471 (770)
+..- ++++..|...|.+++..++.++.+....+-++.-.|+...|....+.++...|.. ...-+.+-.-.+|..+-+
T Consensus 261 i~lg-~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~ 339 (366)
T KOG2796|consen 261 LHLG-QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSR 339 (366)
T ss_pred heec-ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhh
Confidence 5434 4889999999999999999999999999999999999999999999999998831 122344444555655554
Q ss_pred HHHHHHHH
Q 004187 472 LDSTLKVE 479 (770)
Q Consensus 472 ~~~~~k~~ 479 (770)
.......+
T Consensus 340 ~~~~k~~l 347 (366)
T KOG2796|consen 340 SMQKKQAL 347 (366)
T ss_pred hhhHHHHH
Confidence 44433333
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.03 E-value=0.0015 Score=48.31 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHH
Q 004187 57 KFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIR 97 (770)
Q Consensus 57 ~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~ 97 (770)
..|..++..+...|++++|+++|+++++.+| +.++|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 5677888888888888888888888888887 6777777654
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.97 E-value=0.086 Score=57.55 Aligned_cols=169 Identities=13% Similarity=0.077 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---hCcHHHHHHHHHHHhccCCCCcHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKA----LPDSEMLRYAFAELEES---RGAIAAAKKLYESLLTDSVNTTALA 353 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~----~P~s~~lw~~~a~~~~~---~g~~e~A~~iye~al~~~p~~~~~~ 353 (770)
++++-+++...|....+++..+++.+..-.. .++...+.+.||..+.+ .|+.++|..++..++.......+++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4455555555566666777777777665544 45566777788887777 6888888888888665544446677
Q ss_pred HHHHHHHHHH---------hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC-H---HHHHHHH----HHHHHh-
Q 004187 354 HIQFIRFLRR---------TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD-P---KLAHNVF----EAGLKR- 415 (770)
Q Consensus 354 w~~~~~~~~r---------~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~-~---~~A~~if----e~alk~- 415 (770)
+...++.+.+ ....++|+..|.++-+..+. ...=+++|.++... |. . .+.+++- ....++
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~-g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLA-GHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHc-CCcccchHHHHHHHHHHHHHHHhhc
Confidence 7666665543 23478899999999887754 44556676665543 32 2 2333333 111122
Q ss_pred -CCCcHHHHH--HHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 416 -FMHEPAYIL--EYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 416 -~p~~~~~~l--~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
......+|. .++....-.|++++|.+.++++++..|
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 123457775 566667778999999999999998765
No 207
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.95 E-value=0.0064 Score=58.76 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=57.8
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCc-
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS----------IDAAIKVFQRALKALPDSEMLRYAFAELEESRGA- 331 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~----------~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~- 331 (770)
.++.++..++.....+|++.+.++.++..|..+.+ +++|+.-|+.|+..+|+.....+.++..+..++.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 34455667888888999999999999999987632 5678888888899999988877777776654432
Q ss_pred ----------HHHHHHHHHHHhccCCC
Q 004187 332 ----------IAAAKKLYESLLTDSVN 348 (770)
Q Consensus 332 ----------~e~A~~iye~al~~~p~ 348 (770)
+++|...|+++...+|.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455555555555554
No 208
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=96.95 E-value=0.011 Score=54.74 Aligned_cols=105 Identities=15% Similarity=0.351 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHhCc
Q 004187 268 IFTYEQCLMYLY---HYPDIWYDYATWNAKS----GSIDAAIKVFQRALKALPDS---------EMLRYAFAELEESRGA 331 (770)
Q Consensus 268 ~~~ye~aL~~~p---~~~~~w~~~a~~l~~~----g~~e~A~~v~erAi~~~P~s---------~~lw~~~a~~~~~~g~ 331 (770)
...|++.+.... +--+.|..|..+..+. +.......+++|++....++ ..+|+.||.+..
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~---- 80 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS---- 80 (126)
T ss_dssp HHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS----
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc----
Confidence 346677776443 3347888888888764 34556677888888775543 345666665432
Q ss_pred HHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004187 332 IAAAKKLYESLLTDSV-NTTALAHIQFIRFLRRTEGVEAARKYFLDAR 378 (770)
Q Consensus 332 ~e~A~~iye~al~~~p-~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al 378 (770)
.++++|+.+....- ...+..|+.++.++...|++++|.++|+.+|
T Consensus 81 --~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 --DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp --HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 56666665554321 1256667777777766777777777766654
No 209
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.86 E-value=0.023 Score=55.52 Aligned_cols=96 Identities=16% Similarity=0.022 Sum_probs=55.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc
Q 004187 291 WNAKSGSIDAAIKVFQRALKALPDS-----EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE 365 (770)
Q Consensus 291 ~l~~~g~~e~A~~v~erAi~~~P~s-----~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~ 365 (770)
-+..+|++++|..-|.+|+..||.. ..++...|.+..+++..+.|.+--.++|++.|. ...+....+..+....
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 3445566666666666666666643 234444555556666666666666666666665 4445555555555556
Q ss_pred CHHHHHHHHHHHHcCCCCCHHH
Q 004187 366 GVEAARKYFLDARKSPNFTYHV 387 (770)
Q Consensus 366 ~~e~A~~~f~~Al~~~~~~~~~ 387 (770)
.++.|+.-|+++++..|...++
T Consensus 183 k~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHH
Confidence 6666666666666655543333
No 210
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.12 Score=52.25 Aligned_cols=192 Identities=13% Similarity=0.037 Sum_probs=104.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH------HHHHHHHhCcHHHHHHHHHHHhcc-----CCCCcHHH
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYA------FAELEESRGAIAAAKKLYESLLTD-----SVNTTALA 353 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~------~a~~~~~~g~~e~A~~iye~al~~-----~p~~~~~~ 353 (770)
|...+..+....++++|...+.+|++..-++..+|.+ .+.+......+.++..+|+++... .|+ ..-.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd-tAAm 112 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD-TAAM 112 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc-hHHH
Confidence 3334445555567777777777777665555544432 122233345566777777777643 111 1111
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcC---CCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH------hCCCcHH
Q 004187 354 HIQFIRFLRRTEGVEAARKYFLDARKS---PNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLK------RFMHEPA 421 (770)
Q Consensus 354 w~~~~~~~~r~~~~e~A~~~f~~Al~~---~~~---~~~~yi~~a~le~~~~g~~~~A~~ife~alk------~~p~~~~ 421 (770)
-+..+-=.....+++.|.++|++++.. ... ..+.+-..+.++.+. ..+++|-..|.+-.. ..++.-.
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl-~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL-EKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh-HHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 222222233456788888888888642 211 234444555555554 556665554433221 2344445
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004187 422 YILEYADFLSRLNDDRNIRALFERALSS--LPPEESIEVWKRFTQFEQMYGDLDSTLKVE 479 (770)
Q Consensus 422 ~~l~ya~~l~~~g~~~~Ar~lferaL~~--~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~ 479 (770)
.+...+-.++..+++..|..+|...-+. +-..+......+++.+. .-||.+.+.++.
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 5666666777778899999888886653 11123344445554443 457776666543
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.85 E-value=0.0017 Score=54.32 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc----HHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKA---LPDS----EMLRYAFAELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~---~P~s----~~lw~~~a~~~~~~g~~e~A~~iye~al~~ 345 (770)
..++..+|.++...|++++|++.|++++.. .+++ ...+..+|.++...|++++|.+.|+++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356777788888888888888888888754 2221 345566777777777777777777777653
No 212
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.84 E-value=0.0012 Score=45.89 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Q 004187 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI 302 (770)
Q Consensus 271 ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~ 302 (770)
|+++|+.+|+++++|+.+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666554
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.76 E-value=0.01 Score=65.46 Aligned_cols=70 Identities=16% Similarity=-0.032 Sum_probs=65.0
Q ss_pred hCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHH---HHHHHHHHHHHhcCHHHHHHHHHHHHcCC
Q 004187 311 ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTAL---AHIQFIRFLRRTEGVEAARKYFLDARKSP 381 (770)
Q Consensus 311 ~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~---~w~~~~~~~~r~~~~e~A~~~f~~Al~~~ 381 (770)
..|++...|+.++..+...|++++|...|+++|+.+|+ ... +|++++..+...|++++|+..|++|++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999998 453 59999999999999999999999999963
No 214
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.66 E-value=0.022 Score=55.64 Aligned_cols=94 Identities=17% Similarity=0.082 Sum_probs=80.6
Q ss_pred hhhhHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHH
Q 004187 262 SSNKRIIFTYEQCLMYLYHYPD-----IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAK 336 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~~~~-----~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~ 336 (770)
+.++.+..-|..||..||.-+. ++..-|.++++++.++.|++-+.+||..+|.........|.+|++...++.|.
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eeal 188 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEAL 188 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHH
Confidence 4566677899999999987543 67778888999999999999999999999999998889999999999999999
Q ss_pred HHHHHHhccCCCCcHHHHHH
Q 004187 337 KLYESLLTDSVNTTALAHIQ 356 (770)
Q Consensus 337 ~iye~al~~~p~~~~~~w~~ 356 (770)
.-|++++...|. ...+.-.
T Consensus 189 eDyKki~E~dPs-~~ear~~ 207 (271)
T KOG4234|consen 189 EDYKKILESDPS-RREAREA 207 (271)
T ss_pred HHHHHHHHhCcc-hHHHHHH
Confidence 999999999997 3344333
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.16 Score=52.98 Aligned_cols=158 Identities=14% Similarity=0.076 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHH---HHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ---FIR 359 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~---~~~ 359 (770)
+.-+.-+.-....|++.+|...|..++...|++..+.+.|+.++...|+.+.|..++...-..... ..|.. .+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~---~~~~~l~a~i~ 211 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD---KAAHGLQAQIE 211 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh---hHHHHHHHHHH
Confidence 334444555667889999999999999999999999999999999999999999999764333322 23332 344
Q ss_pred HHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCChh
Q 004187 360 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--EPAYILEYADFLSRLNDDR 437 (770)
Q Consensus 360 ~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~--~~~~~l~ya~~l~~~g~~~ 437 (770)
++.+.....+...+-.++-. ++.+...-+.+|..+.. .|+.+.|.+.+-..++++.. +...-..+++++...|..+
T Consensus 212 ll~qaa~~~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 212 LLEQAAATPEIQDLQRRLAA-DPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHhcCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 44444333333333333333 34456666666666544 37777777766666665432 3445555555555555333
Q ss_pred HHHHHHHH
Q 004187 438 NIRALFER 445 (770)
Q Consensus 438 ~Ar~lfer 445 (770)
-+-..|.|
T Consensus 290 p~~~~~RR 297 (304)
T COG3118 290 PLVLAYRR 297 (304)
T ss_pred HHHHHHHH
Confidence 33333333
No 216
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.64 E-value=0.083 Score=52.44 Aligned_cols=98 Identities=17% Similarity=0.118 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~ 362 (770)
.+.++-+.++-+.|-..-|+.-|.+++...|+-+.+..-++.++...|+++.|.+.|+..++.+|. ..-+..+.+-...
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~Y 144 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 144 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeee
Confidence 345555566666666666666666666666666666666666666666666666666666666665 2233333332222
Q ss_pred HhcCHHHHHHHHHHHHcCC
Q 004187 363 RTEGVEAARKYFLDARKSP 381 (770)
Q Consensus 363 r~~~~e~A~~~f~~Al~~~ 381 (770)
--|+++-|.+-|.+--+.+
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred ecCchHhhHHHHHHHHhcC
Confidence 2355555555555544433
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.03 Score=57.76 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=70.0
Q ss_pred hcCHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhcCChh
Q 004187 364 TEGVEAARKYFLDARKSPN---FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE---PAYILEYADFLSRLNDDR 437 (770)
Q Consensus 364 ~~~~e~A~~~f~~Al~~~~---~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~---~~~~l~ya~~l~~~g~~~ 437 (770)
.|++..|...|..-++.-| ....++.-+++..|.. |+++.|..+|..+.+.+|++ |+.++..+..+.++|+.+
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~q-g~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQ-GDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhc-ccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3556666666666665422 2456666677777775 99999999999999988774 688999999999999999
Q ss_pred HHHHHHHHHHhCCCch
Q 004187 438 NIRALFERALSSLPPE 453 (770)
Q Consensus 438 ~Ar~lferaL~~~p~~ 453 (770)
.|+..|+.+++..|..
T Consensus 233 ~A~atl~qv~k~YP~t 248 (262)
T COG1729 233 EACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHHHCCCC
Confidence 9999999999999843
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.59 E-value=0.051 Score=50.91 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHH
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKS---PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 421 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~---~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~ 421 (770)
....++.-+.-..+.|++++|++.|+..... ++....+.+.++...+.. ++++.|+..+++-++.+|.++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~-~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ-GDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCCC
Confidence 3445555555566667777777777766654 223455666666666664 7888888888888888777653
No 219
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.58 E-value=0.0038 Score=42.32 Aligned_cols=29 Identities=34% Similarity=0.726 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004187 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAY 66 (770)
Q Consensus 38 i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e 66 (770)
++.++.+|++++..+|.+..+|..|++++
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 34455555555555555555555555554
No 220
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.57 E-value=0.0029 Score=44.00 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHH
Q 004187 304 VFQRALKALPDSEMLRYAFAELEESRGAIAAAK 336 (770)
Q Consensus 304 v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~ 336 (770)
.|++||+.+|++...|+.+|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999886
No 221
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.55 E-value=0.0093 Score=62.49 Aligned_cols=97 Identities=13% Similarity=0.021 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~ 364 (770)
.-+-+.-|..+|.+++|+++|.+++...|.+.-++...|..|.+...+..|..-.+.++..+.. ...+|...+..-...
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777777777777777776666666655555554432 233333333333333
Q ss_pred cCHHHHHHHHHHHHcCCC
Q 004187 365 EGVEAARKYFLDARKSPN 382 (770)
Q Consensus 365 ~~~e~A~~~f~~Al~~~~ 382 (770)
|..++|.+-+++++...+
T Consensus 179 g~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEP 196 (536)
T ss_pred hhHHHHHHhHHHHHhhCc
Confidence 444444444444444433
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.54 E-value=0.4 Score=51.86 Aligned_cols=97 Identities=11% Similarity=-0.048 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhcc----CCC-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC------CCCCHH
Q 004187 318 LRYAFAELEESRGAIAAAKKLYESLLTD----SVN-TTALAHIQFIRFLRRTEGVEAARKYFLDARKS------PNFTYH 386 (770)
Q Consensus 318 lw~~~a~~~~~~g~~e~A~~iye~al~~----~p~-~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~------~~~~~~ 386 (770)
.+..++.++.-.|+++.|.+.|++.+.. ... ..+...+.+++.+.-...+++|+.++.+-+.. ......
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3445666667777777777777766532 111 02334455666666666777777777664421 112344
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 387 VYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 387 ~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
++..++...... |..++|....+..++.
T Consensus 317 acwSLgna~~al-g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 317 ACWSLGNAFNAL-GEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Confidence 555555544343 7777777766666654
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.52 E-value=0.13 Score=57.23 Aligned_cols=185 Identities=20% Similarity=0.189 Sum_probs=116.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc
Q 004187 286 YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE 365 (770)
Q Consensus 286 ~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~ 365 (770)
....+-..+..+...-++.-.+|++.+|+....|+.+|. +....+.+|.++|+++++.... -+....+....|
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~-----~lg~s~~~~~~g 244 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA-----SLGKSQFLQHHG 244 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH-----hhchhhhhhccc
Confidence 344444456677888888999999999999998877654 4455678999999999885432 111111111111
Q ss_pred CHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCChhHHHH
Q 004187 366 GVEAARKYFLDARKSPNFTYHVYVA--YALMAFCQDKDPKLAHNVFEAGLKRFMH--EPAYILEYADFLSRLNDDRNIRA 441 (770)
Q Consensus 366 ~~e~A~~~f~~Al~~~~~~~~~yi~--~a~le~~~~g~~~~A~~ife~alk~~p~--~~~~~l~ya~~l~~~g~~~~Ar~ 441 (770)
. +-.+....+....+|++ +|....+. |+.++|.+.|+.+++.+|. +..+....+..+..++.+.++..
T Consensus 245 ~-------~~e~~~~Rdt~~~~y~KrRLAmCarkl-Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 245 H-------FWEAWHRRDTNVLVYAKRRLAMCARKL-GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred c-------hhhhhhccccchhhhhHHHHHHHHHHh-CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 1 11111111122233333 56666665 9999999999999998876 44678889999999999999999
Q ss_pred HHHHHHhC-CCchhHHHHHHHHHHHHH-HcCCH---------------HHHHHHHHHHHHhcc
Q 004187 442 LFERALSS-LPPEESIEVWKRFTQFEQ-MYGDL---------------DSTLKVEQRRKEALS 487 (770)
Q Consensus 442 lferaL~~-~p~~~~~~lw~~~~~fE~-~~Gd~---------------~~~~k~~~R~~~~~~ 487 (770)
++.+-=.. +| ++..+-+--+.+.. ..||. ..+.+..+|+.+..|
T Consensus 317 lL~kYdDi~lp--kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 317 LLAKYDDISLP--KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred HHHHhccccCC--chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 99885322 34 44444443333332 23332 123456777777666
No 224
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.50 E-value=0.041 Score=50.59 Aligned_cols=91 Identities=23% Similarity=0.418 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHc-CCCCCCcchhhhHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004187 241 WIAWKRLLTFEKG-NPQRIDTASSNKRIIFTYEQCLMYL---------YHYPDIWYDYATWNAKSGSIDAAIKVFQRALK 310 (770)
Q Consensus 241 ~~lw~~yi~~ek~-n~~~ld~~~~~~r~~~~ye~aL~~~---------p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~ 310 (770)
+..|.+||.|.+. .|... .......++++|+..+ |.+..+|+.|+.+. ++..++|.-...
T Consensus 22 L~~w~~yI~W~~~~~p~g~----~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~ 91 (125)
T smart00777 22 LDLWLRYIKWTEENYPQGG----KESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYS 91 (125)
T ss_pred hHHHHHHHHHHHHhCCCCC----chhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHH
Confidence 4799999999764 44331 2234566888888754 33457899998764 335667777766
Q ss_pred hC--CCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 311 AL--PDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 311 ~~--P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
.. -....+|..+|.+++..|++.+|.++|+.
T Consensus 92 ~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 92 KGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 43 35577888899999999999999998864
No 225
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.46 E-value=2.3 Score=49.23 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=36.4
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004187 32 SALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80 (770)
Q Consensus 32 ~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ife 80 (770)
....+++++|.. |-.-++.-|....+|+.+.++.+..||.--|.++|.
T Consensus 454 aid~~df~ra~a-fles~~~~~da~amw~~laelale~~nl~iaercfa 501 (1636)
T KOG3616|consen 454 AIDDGDFDRATA-FLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFA 501 (1636)
T ss_pred ccccCchHHHHH-HHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 334557888875 445567889999999999999999999776655554
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.44 E-value=0.0047 Score=51.64 Aligned_cols=65 Identities=20% Similarity=0.131 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC---CCC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 004187 315 SEMLRYAFAELEESRGAIAAAKKLYESLLTDS---VNT---TALAHIQFIRFLRRTEGVEAARKYFLDARK 379 (770)
Q Consensus 315 s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~---p~~---~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~ 379 (770)
-..++..+|.++...|++++|.+.|+++++.. +.. ...++..++..+...|++++|+++|+++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556677777777777777777777777541 110 133455666666666666666666666653
No 227
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.41 E-value=0.0063 Score=41.24 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 401 DPKLAHNVFEAGLKRFMHEPAYILEYADFLS 431 (770)
Q Consensus 401 ~~~~A~~ife~alk~~p~~~~~~l~ya~~l~ 431 (770)
+.+.|+.+|+++++.+|.++.+|..|++|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 4556666666666666666666666666653
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.22 Score=50.92 Aligned_cols=132 Identities=12% Similarity=0.085 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC----CC-cHHHHHHHHH
Q 004187 286 YDYATWNAKSGSIDAAIKVFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV----NT-TALAHIQFIR 359 (770)
Q Consensus 286 ~~~a~~l~~~g~~e~A~~v~erAi~~~-P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p----~~-~~~~w~~~~~ 359 (770)
+.++.++.-.+.+.-..+.+.+.++.+ |..+.+...++.+..+-|+.+.|...|++.-+... .. ...+..+.+-
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 445556666667777788888888877 57788888899999999999988888885433211 10 2334445455
Q ss_pred HHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 360 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 360 ~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
.+.-.+++..|-..|.+++..++.+...-.+.|.+.... |+...|.+..+.++...|.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl-g~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL-GKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH-HHHHHHHHHHHHHhccCCc
Confidence 555578888888899999888777777666778877775 9999999999999999876
No 229
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.25 E-value=1.4 Score=51.33 Aligned_cols=49 Identities=24% Similarity=0.202 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH-hcCChhH---HHHHHHHHHh
Q 004187 400 KDPKLAHNVFEAGLKRFMHE--PAYILEYADFLS-RLNDDRN---IRALFERALS 448 (770)
Q Consensus 400 g~~~~A~~ife~alk~~p~~--~~~~l~ya~~l~-~~g~~~~---Ar~lferaL~ 448 (770)
+++|.+-.+|+.......+. ..+++.-.+.+. -.+|+.- -..+.|.+++
T Consensus 379 ~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecIS 433 (1102)
T KOG1924|consen 379 AEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECIS 433 (1102)
T ss_pred hhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 67788888888777654331 233444444333 3344422 2234455555
No 230
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.21 E-value=0.0061 Score=41.19 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=26.9
Q ss_pred ChhhHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYM 67 (770)
Q Consensus 37 ~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~ 67 (770)
.+++||.+||+++..+|. ...|+.|+++|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 478999999999999976 678999999985
No 231
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.15 E-value=0.025 Score=59.41 Aligned_cols=108 Identities=12% Similarity=-0.038 Sum_probs=85.9
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 004187 322 FAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD 401 (770)
Q Consensus 322 ~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~ 401 (770)
-+.-|.++|.|++|.++|.+++...|. ++-.+...+..+.+...+..|..-+..|+..+.....+|...+.....+ |+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L-g~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL-GN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH-hh
Confidence 355566788899999999999988886 4566777777778888888888888888888777778888877776665 88
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 402 PKLAHNVFEAGLKRFMHEPAYILEYADFLS 431 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~~l~ya~~l~ 431 (770)
..+|.+-+|.+|...|++-++-..|+++-.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 888999999999998888888777776544
No 232
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.14 E-value=0.69 Score=50.44 Aligned_cols=117 Identities=17% Similarity=0.259 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCC------
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKSP----NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR-FMH------ 418 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~----~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~-~p~------ 418 (770)
....|+.+++..++.|.++.|...+.++.+.. .....+.+..|.+.+.. |+..+|...++..++. ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~-g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQ-GEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhcccccc
Confidence 45789999999999999999999999988743 11467788888888885 8999999988888872 110
Q ss_pred ---------------------------cHHHHHHHHHHHHhc------CChhHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 004187 419 ---------------------------EPAYILEYADFLSRL------NDDRNIRALFERALSSLPPEESIEVWKRFTQF 465 (770)
Q Consensus 419 ---------------------------~~~~~l~ya~~l~~~------g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~f 465 (770)
...+++.++.|.... +..+++...|..+++..| .....|..++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP--SWEKAWHSWALF 301 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh--hHHHHHHHHHHH
Confidence 135667777777777 778889999999998877 666788888887
Q ss_pred HHHc
Q 004187 466 EQMY 469 (770)
Q Consensus 466 E~~~ 469 (770)
....
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.11 E-value=2.5 Score=45.35 Aligned_cols=204 Identities=13% Similarity=0.047 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC----C---
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALP--DS----EMLRYAFAELEESRGAIAAAKKLYESLLTDSVN----T--- 349 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P--~s----~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~----~--- 349 (770)
.+...++..+...+.++++++.||.|++..- ++ ..++..++.++.+..|+++|.-...++...... +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 3445577777788889999999999988533 33 235778899999999999988877777664321 0
Q ss_pred --cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC----CCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---CC
Q 004187 350 --TALAHIQFIRFLRRTEGVEAARKYFLDARKS----PNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF---MH 418 (770)
Q Consensus 350 --~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~----~~~--~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~---p~ 418 (770)
...+.+.++-.++..|..-.|.+..++|.+. ++. ......-+|.|+.. .|+.+.|..-||.+...- .|
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~-~gd~e~af~rYe~Am~~m~~~gd 281 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS-RGDLERAFRRYEQAMGTMASLGD 281 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhhhh
Confidence 1224455566677788888888888887653 222 23334456777555 499999999999887642 12
Q ss_pred ---cHHHHHHHHHHHHhcCChh-----HHHHHHHHHHhCC---C-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 419 ---EPAYILEYADFLSRLNDDR-----NIRALFERALSSL---P-PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 419 ---~~~~~l~ya~~l~~~g~~~-----~Ar~lferaL~~~---p-~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
...+....+..+....-.+ +|.+.-+|+++.- . +.-...+..+.+.+....|+-+....-..|+-+..
T Consensus 282 rmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 282 RMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 2244445555554332222 2555555555431 1 11123455566666666676666666666655544
Q ss_pred c
Q 004187 487 S 487 (770)
Q Consensus 487 ~ 487 (770)
.
T Consensus 362 ~ 362 (518)
T KOG1941|consen 362 E 362 (518)
T ss_pred H
Confidence 3
No 234
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.10 E-value=0.015 Score=39.91 Aligned_cols=34 Identities=26% Similarity=0.536 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS 315 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s 315 (770)
+++|+.+|.++...|++++|++.|++++..+|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888864
No 235
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.08 E-value=0.068 Score=51.80 Aligned_cols=65 Identities=15% Similarity=-0.052 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 004187 298 IDAAIKVFQRALKALPDSEMLRYAFAELEESRG----------AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 363 (770)
Q Consensus 298 ~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g----------~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r 363 (770)
++.|++.++.....+|.+.+.++.++..+..+. -+++|..-|+.+|.++|+ ..+++..+++.+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 567899999999999999998888877665542 245677777778888887 56666666655443
No 236
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.00 E-value=4.4 Score=47.07 Aligned_cols=105 Identities=15% Similarity=0.078 Sum_probs=52.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHH
Q 004187 293 AKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK 372 (770)
Q Consensus 293 ~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~ 372 (770)
.....+.+|+.+++..-...--+ ..+-..|+-|...|+++.|.++|.++ ..+..-+.++-+.|.++.|-+
T Consensus 743 i~akew~kai~ildniqdqk~~s-~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTAS-GYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcccc-ccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHH
Confidence 33445555555555433322111 12223455566677777777777542 223333445555666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 004187 373 YFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVF 409 (770)
Q Consensus 373 ~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~if 409 (770)
+-+++.... .....|+..|.=+-.. |++.+|.++|
T Consensus 813 la~e~~~~e-~t~~~yiakaedldeh-gkf~eaeqly 847 (1636)
T KOG3616|consen 813 LAEECHGPE-ATISLYIAKAEDLDEH-GKFAEAEQLY 847 (1636)
T ss_pred HHHHhcCch-hHHHHHHHhHHhHHhh-cchhhhhhee
Confidence 655554322 2345566655543332 5655555544
No 237
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.00 E-value=0.28 Score=52.99 Aligned_cols=166 Identities=13% Similarity=0.003 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCcHHHHHHH-------------HHHHHHhCcHHHH
Q 004187 282 PDIWYDYATWNAKSGS-------------IDAAIKVFQRALKALPDSEMLRYAF-------------AELEESRGAIAAA 335 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~-------------~e~A~~v~erAi~~~P~s~~lw~~~-------------a~~~~~~g~~e~A 335 (770)
..++|.++.+|...|+ .+++.+.|++|++....+..+-..+ +.-|.-+|+|+.|
T Consensus 135 ~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~a 214 (639)
T KOG1130|consen 135 SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQA 214 (639)
T ss_pred hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHH
Confidence 4678888888887664 3567788888887766665543332 2223345888888
Q ss_pred HHHHHHHhccCCC-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCCCHHH
Q 004187 336 KKLYESLLTDSVN-----TTALAHIQFIRFLRRTEGVEAARKYFLDAR----KSPNFTY--HVYVAYALMAFCQDKDPKL 404 (770)
Q Consensus 336 ~~iye~al~~~p~-----~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al----~~~~~~~--~~yi~~a~le~~~~g~~~~ 404 (770)
...-+.-|.+... ....++..+++.+.-.|+++.|.+.|++.+ +...... +.-+.++.-++- .+++++
T Consensus 215 i~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~k 293 (639)
T KOG1130|consen 215 IHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQK 293 (639)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHH
Confidence 8766554443211 012456667777777788888998888764 3333322 223334444333 378888
Q ss_pred HHHHHHHHHHhCC------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 405 AHNVFEAGLKRFM------HEPAYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 405 A~~ife~alk~~p------~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
|+..+.+-+++-. .........+..+..+|+.++|....+..++
T Consensus 294 AI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 294 AITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 8888887776521 1334455677777788888888888877775
No 238
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.00 E-value=3 Score=45.20 Aligned_cols=189 Identities=19% Similarity=0.121 Sum_probs=111.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--c---HH-HHHHHHHHHHHhcCH
Q 004187 294 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT--T---AL-AHIQFIRFLRRTEGV 367 (770)
Q Consensus 294 ~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~--~---~~-~w~~~~~~~~r~~~~ 367 (770)
..|..+.|+..-+++-...|.-...|.....-....|+.+.|.++.+......-.. . .. +.+.---...-.-+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 46778888888888888888877777666565666788888888776554432211 0 11 111111122223456
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004187 368 EAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERAL 447 (770)
Q Consensus 368 e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL 447 (770)
..|+..-.++.+..+.....-+..+..++.. |+.-++-+|+|.+.|.+|+ |++|..|.+. +-|+....|--=-+.|
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d-~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a--r~gdta~dRlkRa~~L 321 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRD-GNLRKGSKILETAWKAEPH-PDIALLYVRA--RSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhc-cchhhhhhHHHHHHhcCCC-hHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 7778888888877776666666666666664 8888888888888888876 6777776653 3444433332222233
Q ss_pred hCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 448 SSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 448 ~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..+.+ ++.+-....++-...-|++..++.--+.....-|
T Consensus 322 ~slk~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 322 ESLKP-NNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HhcCc-cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 33332 3344333444444455777666655444444444
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.96 E-value=0.076 Score=48.47 Aligned_cols=90 Identities=19% Similarity=0.103 Sum_probs=64.7
Q ss_pred HHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcC
Q 004187 324 ELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF----TYHVYVAYALMAFCQD 399 (770)
Q Consensus 324 ~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~----~~~~yi~~a~le~~~~ 399 (770)
......|+.+.|.+.|.++|...|. .+.+|...++.++-+++.++|..-+++|++.... ..+.|+..+.+ |+..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l-yRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL-YRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHh
Confidence 3344567788888888888888877 6778888888888888888888888888764322 34667777766 3444
Q ss_pred CCHHHHHHHHHHHHHh
Q 004187 400 KDPKLAHNVFEAGLKR 415 (770)
Q Consensus 400 g~~~~A~~ife~alk~ 415 (770)
|+.+.|+.-|+.+-+.
T Consensus 129 g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQL 144 (175)
T ss_pred CchHHHHHhHHHHHHh
Confidence 7778888877777664
No 240
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.72 E-value=0.023 Score=39.06 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS 315 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s 315 (770)
+++|+..|..+...|++++|+..|+++++.+|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3577888888888888888888888888887763
No 241
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.72 E-value=1 Score=46.26 Aligned_cols=158 Identities=16% Similarity=0.048 Sum_probs=98.9
Q ss_pred hhhhHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHh-----C
Q 004187 262 SSNKRIIFTYEQCLMYLYH---YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEML---RYAFAELEESR-----G 330 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~---~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~l---w~~~a~~~~~~-----g 330 (770)
+..+.+...|+......|. .+++.+..+-.+.+.+++++|+...+|-+..+|++..+ .+..+..+... .
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~r 127 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTR 127 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcccc
Confidence 3456778889999888775 45889999999999999999999999999999988654 22222222211 1
Q ss_pred c---HHHHHHHHHHHhccCCCCc----HHH------------HHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004187 331 A---IAAAKKLYESLLTDSVNTT----ALA------------HIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAY 391 (770)
Q Consensus 331 ~---~e~A~~iye~al~~~p~~~----~~~------------w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~ 391 (770)
| ..+|..-|+..+...|+.. +.. =++.++|+.+.|.+..|..-|+++++.-+.+.++.-.+
T Consensus 128 Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL 207 (254)
T COG4105 128 DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREAL 207 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHH
Confidence 2 2456677788888888631 111 13445677777777777777777777644443333332
Q ss_pred HH---HHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 392 AL---MAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 392 a~---le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
+. ..+.. |-.++|.+.-.-.-..+|+++
T Consensus 208 ~~l~eaY~~l-gl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 208 ARLEEAYYAL-GLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHh-CChHHHHHHHHHHHhcCCCCc
Confidence 22 22332 555555544333333345544
No 242
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.70 E-value=0.61 Score=49.77 Aligned_cols=202 Identities=16% Similarity=0.145 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-----cHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPD------SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-----TAL 352 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~------s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~-----~~~ 352 (770)
++.+++.-....-++.+++.+-...+. .|. -......++..+...+.++++.+.|+++++.-... ...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~-lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLG-LPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhc-CCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 344444444444444445444333332 221 12344557778888899999999999999753321 236
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCC----CCHHH------HHHHHHHHHhcCCCHHHHHHHHHHHHHh---CCCc
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPN----FTYHV------YVAYALMAFCQDKDPKLAHNVFEAGLKR---FMHE 419 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~----~~~~~------yi~~a~le~~~~g~~~~A~~ife~alk~---~p~~ 419 (770)
+++.++.++.+..++++|.-+..+|.+... ..++. .+.++..+.. .|..-.|.+..+.+.+. ..|.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~-~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL-LGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHhCCh
Confidence 889999999999999999988888875422 12333 2333333333 48888899999998886 3443
Q ss_pred H---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc--hh---------------------------HHHHHHHHHHHHH
Q 004187 420 P---AYILEYADFLSRLNDDRNIRALFERALSSLPP--EE---------------------------SIEVWKRFTQFEQ 467 (770)
Q Consensus 420 ~---~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~--~~---------------------------~~~lw~~~~~fE~ 467 (770)
+ .-...+++++...|+.+.|..-||.|...... +. ..++-.+.++...
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 3 45678999999999999999999998864220 00 1334445555666
Q ss_pred HcCCHHHHHHHHHHHHHhcc
Q 004187 468 MYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 468 ~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..|..-.++|+.-|....+.
T Consensus 323 ~IG~K~~vlK~hcrla~iYr 342 (518)
T KOG1941|consen 323 SIGAKLSVLKLHCRLASIYR 342 (518)
T ss_pred HhhhhHHHHHHHHHHHHHHH
Confidence 77777777887777777774
No 243
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.8 Score=47.00 Aligned_cols=183 Identities=9% Similarity=0.002 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHH-HHHHHHHH
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG-SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIA-AAKKLYES 341 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g-~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e-~A~~iye~ 341 (770)
..|++.+-+.|+..+|-+..+|.---.++...+ +..+-++.+++.+..+|+|-.+|...-.+.+..|+.. +-.++.++
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 358899999999999999999988777777654 6778889999999999999999998888888888776 66677777
Q ss_pred HhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHhC
Q 004187 342 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPK-----LAHNVFEAGLKRF 416 (770)
Q Consensus 342 al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~-----~A~~ife~alk~~ 416 (770)
++..+.. +--+|...-=..+..++++.-..+..+.++.+..+-.+|...-.+.....|-.+ .-...-...+...
T Consensus 139 ~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~v 217 (318)
T KOG0530|consen 139 MLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLV 217 (318)
T ss_pred HHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhC
Confidence 7876554 566787655555666778888888888887544444445442111111112222 2344556677778
Q ss_pred CCcHHHHHHHHHHHHh-cC--ChhHHHHHHHHHH
Q 004187 417 MHEPAYILEYADFLSR-LN--DDRNIRALFERAL 447 (770)
Q Consensus 417 p~~~~~~l~ya~~l~~-~g--~~~~Ar~lferaL 447 (770)
|++...|....-++.. .| .+.+.....+..+
T Consensus 218 P~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 218 PNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 9999999877777775 33 2444444444444
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.53 Score=49.71 Aligned_cols=142 Identities=11% Similarity=-0.002 Sum_probs=103.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 269 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-LPDS---EMLRYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 269 ~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~-~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
...++.|...|.+--+|-.--..+.-+|+.+.-+..+++.+-. +++- ..+.=.|+-.++..|-+++|.+.-+++++
T Consensus 124 ~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralq 203 (491)
T KOG2610|consen 124 IEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQ 203 (491)
T ss_pred HHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhcc
Confidence 4567778878887777777777777788888888888888876 5554 55666677888889999999999999999
Q ss_pred cCCCCcHHHHH--HHHHHHHHhcCHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004187 345 DSVNTTALAHI--QFIRFLRRTEGVEAARKYFLDARKSPNF----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 345 ~~p~~~~~~w~--~~~~~~~r~~~~e~A~~~f~~Al~~~~~----~~~~yi~~a~le~~~~g~~~~A~~ife~alk 414 (770)
+++. +.|- ..+..+.-.++++++.++..+--.+=++ ..|-|...|.+.... +.++.|.+||++-+-
T Consensus 204 iN~~---D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~-aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 204 INRF---DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG-AEYEKALEIYDREIW 275 (491)
T ss_pred CCCc---chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc-cchhHHHHHHHHHHH
Confidence 9887 3454 4555666678888888887765433222 234566667665554 788888888876654
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.54 E-value=0.21 Score=47.21 Aligned_cols=55 Identities=18% Similarity=0.078 Sum_probs=26.4
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004187 322 FAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDA 377 (770)
Q Consensus 322 ~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~A 377 (770)
++..+...|++++|..++++++..+|. +..+|..++..+...|+...|..+|++.
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 333444445555555555555555554 4445555555555555555555555444
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.36 E-value=0.76 Score=52.57 Aligned_cols=173 Identities=21% Similarity=0.176 Sum_probs=113.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHH-----HHHHH-HH-HHH---HhCcHHHHHHH
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP-DSEM-----LRYAF-AE-LEE---SRGAIAAAKKL 338 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P-~s~~-----lw~~~-a~-~~~---~~g~~e~A~~i 338 (770)
+|.=++...| .....+..+.--.|+-+.+++.+.++.+..- .... +++.. .. +.. ...+.+.|.++
T Consensus 179 ~f~L~lSlLP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~l 255 (468)
T PF10300_consen 179 LFNLVLSLLP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEEL 255 (468)
T ss_pred HHHHHHHhCC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence 5555555554 3345555555567899999999999887422 1211 11111 11 111 23466889999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004187 339 YESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 339 ye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~----~~~~yi~~a~le~~~~g~~~~A~~ife~alk 414 (770)
++...+..|+ .....+..+++++..|++++|+..|++++..... ..-.+..++..... ..++++|...|.+..+
T Consensus 256 L~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 256 LEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHHHHHHHHHHh
Confidence 9999999997 4455566778899999999999999999864322 11223444444334 4899999999999999
Q ss_pred hCCCcHHH-HHHHHHHHHhcCCh-------hHHHHHHHHHH
Q 004187 415 RFMHEPAY-ILEYADFLSRLNDD-------RNIRALFERAL 447 (770)
Q Consensus 415 ~~p~~~~~-~l~ya~~l~~~g~~-------~~Ar~lferaL 447 (770)
....+..+ .+..+-++..+++. ++|..+|.++-
T Consensus 334 ~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 334 ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 87776544 34556788888888 55555555543
No 247
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.32 E-value=0.11 Score=57.19 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=95.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH-hccCCC---C----cHHHHHHHHHHH
Q 004187 290 TWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL-LTDSVN---T----TALAHIQFIRFL 361 (770)
Q Consensus 290 ~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a-l~~~p~---~----~~~~w~~~~~~~ 361 (770)
.++.+..+...+..-..-++...-++....+..+.++...|++.+|.+++... +...+. + ..-+|..++-..
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh 293 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH 293 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence 34444444444443344444444566777777778888888888887776442 111111 0 123556666666
Q ss_pred HHhcCHHHHHHHHHHHHcC------------------CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHH
Q 004187 362 RRTEGVEAARKYFLDARKS------------------PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI 423 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al~~------------------~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~ 423 (770)
.+.+.+..+..+|.+|++. ......+.++++..+... |+...|.++|.++.+.|-.+|.+|
T Consensus 294 ~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~-grPl~AfqCf~~av~vfh~nPrlW 372 (696)
T KOG2471|consen 294 YQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS-GRPLLAFQCFQKAVHVFHRNPRLW 372 (696)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc-CCcHHHHHHHHHHHHHHhcCcHHH
Confidence 6777778888888888741 122467777887776665 999999999999999999999999
Q ss_pred HHHHHHHHh
Q 004187 424 LEYADFLSR 432 (770)
Q Consensus 424 l~ya~~l~~ 432 (770)
+.++.+.+.
T Consensus 373 LRlAEcCim 381 (696)
T KOG2471|consen 373 LRLAECCIM 381 (696)
T ss_pred HHHHHHHHH
Confidence 999987763
No 248
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.31 E-value=0.71 Score=50.85 Aligned_cols=41 Identities=20% Similarity=0.058 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004187 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA 311 (770)
Q Consensus 271 ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~ 311 (770)
+-..|..+|.+.+..++++.++..+|+.+.|.+++|||+-.
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~ 69 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA 69 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999998754
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.28 E-value=0.47 Score=54.24 Aligned_cols=119 Identities=19% Similarity=0.245 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHHhcCHHHHHH
Q 004187 296 GSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT---TALAHIQFIRFLRRTEGVEAARK 372 (770)
Q Consensus 296 g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~---~~~~w~~~~~~~~r~~~~e~A~~ 372 (770)
...+.|.+++++..+..|++....+..|+++...|+.++|.+.|++++.....- ....+..++-.+....++++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 467889999999999999999988899999999999999999999988533220 12334455555666899999999
Q ss_pred HHHHHHcCCCCCHHHHHHH-HHHHHhcCCCH-------HHHHHHHHHHHHh
Q 004187 373 YFLDARKSPNFTYHVYVAY-ALMAFCQDKDP-------KLAHNVFEAGLKR 415 (770)
Q Consensus 373 ~f~~Al~~~~~~~~~yi~~-a~le~~~~g~~-------~~A~~ife~alk~ 415 (770)
.|.+..+.+.-..-.|.-. |.++... ++. ++|.++|+++-..
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l-~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLML-GREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhh-ccchhhhhhHHHHHHHHHHHHHH
Confidence 9999998766533333332 3333443 666 7777777766553
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=1.4 Score=44.92 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc-----HH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKAL-----PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT-----AL 352 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~-----P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~-----~~ 352 (770)
..+-..+.++.....+.++.++|++|.... |+....-+..|.=.....+.++|..+|++++....... .+
T Consensus 72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e 151 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 344455555556677888888888887753 44433333333333455678999999999987654321 23
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--C--CCcHHH
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARK------SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR--F--MHEPAY 422 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~------~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~--~--p~~~~~ 422 (770)
.+-..++.+.+.+.+++|-..|.+-.. .-+.-...|+....+.... .|+..|.++|+..-+. | +++...
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~-~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYA-HDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhH-HHHHHHHHHhcchhcCccccChHHHHH
Confidence 455666777888888877776665432 1122245666655554443 6899999999887664 2 223334
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 004187 423 ILEYADFLSRLNDDRNIRALFE 444 (770)
Q Consensus 423 ~l~ya~~l~~~g~~~~Ar~lfe 444 (770)
...++.++ ..|+.+++..+..
T Consensus 231 lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHHc
Confidence 44444433 4567666665544
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=1.7 Score=45.51 Aligned_cols=155 Identities=15% Similarity=0.038 Sum_probs=108.6
Q ss_pred HHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCCH
Q 004187 324 ELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN-FTYHVYVAYALMAFCQDKDP 402 (770)
Q Consensus 324 ~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~-~~~~~yi~~a~le~~~~g~~ 402 (770)
.-....|++..|...|..++...+. +..+-..|+..+...|+.+.|..++...-.... ..++.......++... .+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa-a~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA-AAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-hcC
Confidence 3345678999999999999999998 688999999999999999999999988543322 2233322222222221 111
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004187 403 KLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQR 481 (770)
Q Consensus 403 ~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R 481 (770)
.+ ..-+++-+..+|++.+.-+..++.+...|+.+.|...+=..|+..-..+....-..++.+-...|..+-+-..++|
T Consensus 220 ~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 220 PE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 11 2346677888999999999999999999999999988777776544345566677777777777744334333333
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.86 Score=48.24 Aligned_cols=159 Identities=12% Similarity=0.014 Sum_probs=110.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc-CCCCcHHHH--HHHHHHHHHhc
Q 004187 289 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD-SVNTTALAH--IQFIRFLRRTE 365 (770)
Q Consensus 289 a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~-~p~~~~~~w--~~~~~~~~r~~ 365 (770)
+..+...|+..+|...+++.++..|++...|-.--+.+--+|+-+..+..+++.+.. +++.+...| -.|+-.+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 445566788999999999999999999877754444455567777778888888866 555333333 35666677789
Q ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc--H--HHHHHHHHHHHhcCChhHHHH
Q 004187 366 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE--P--AYILEYADFLSRLNDDRNIRA 441 (770)
Q Consensus 366 ~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~--~--~~~l~ya~~l~~~g~~~~Ar~ 441 (770)
-++.|.+.-+++++.++.+.=+-...+.++.. .++.+++.+..++--...... . --|-..+-|+++-++++.|..
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEM-NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHh-cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999999999999887643233334444444 488888888765543322211 1 112356778888899999999
Q ss_pred HHHHHHh
Q 004187 442 LFERALS 448 (770)
Q Consensus 442 lferaL~ 448 (770)
+|++-+-
T Consensus 269 IyD~ei~ 275 (491)
T KOG2610|consen 269 IYDREIW 275 (491)
T ss_pred HHHHHHH
Confidence 9997653
No 253
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=1.3 Score=44.69 Aligned_cols=121 Identities=15% Similarity=0.081 Sum_probs=71.4
Q ss_pred CcHHHHHHHHHHHhccCCCC-----cHHHHHHHHHHHHH-hcCHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHh
Q 004187 330 GAIAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRR-TEGVEAARKYFLDARKS------PNFTYHVYVAYALMAFC 397 (770)
Q Consensus 330 g~~e~A~~iye~al~~~p~~-----~~~~w~~~~~~~~r-~~~~e~A~~~f~~Al~~------~~~~~~~yi~~a~le~~ 397 (770)
.+.++|..++++++++..+. -..-++.++.++.. ..+++.|+..|++|-+- ....-..++..|.+-..
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 35566666666666543320 11223445554443 36778888888887641 11123456666655444
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 398 QDKDPKLAHNVFEAGLKRFMHEPA-------YILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 398 ~~g~~~~A~~ife~alk~~p~~~~-------~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
+ +++.+|..+||.......++.- +++.-+-+++-..+.-+++..+++-....|
T Consensus 167 l-eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 167 L-EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred H-HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 4 8889999999988887655542 233333344444677778888888777766
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.91 E-value=0.15 Score=48.18 Aligned_cols=62 Identities=24% Similarity=0.253 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
.+...++..+...|++++|...+++++..+|.+..+|..+..++...|+...|..+|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56667888899999999999999999999999999999999999999999999999988654
No 255
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.81 E-value=12 Score=44.77 Aligned_cols=86 Identities=10% Similarity=0.009 Sum_probs=42.0
Q ss_pred cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhccCcchHHH
Q 004187 34 LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEE 113 (770)
Q Consensus 34 ~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~~y~~~~~~~~~~~~~~~~e~ 113 (770)
.++++.+|....++++.++|+..-+-..-+-...+.|..++|..+++-.-...++.++-+..+.++.+-.+ ..++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~-----~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG-----KLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh-----hhhH
Confidence 34456666666666666666655444444444445555555554444222222344444444444333221 1355
Q ss_pred HHHHHHHHHHh
Q 004187 114 TRKAFDFMLSH 124 (770)
Q Consensus 114 ar~~~e~aL~~ 124 (770)
+-.+|++++..
T Consensus 96 ~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 96 AVHLYERANQK 106 (932)
T ss_pred HHHHHHHHHhh
Confidence 55666655443
No 256
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=2.2 Score=43.90 Aligned_cols=171 Identities=7% Similarity=0.010 Sum_probs=122.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHH-HHHHH
Q 004187 296 GSIDAAIKVFQRALKALPDSEMLRYAFAELEES-RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE-AARKY 373 (770)
Q Consensus 296 g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~-~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e-~A~~~ 373 (770)
.+.+.|.++-+.+|..+|-+-.+|.-.-.++.. ..+..+-.+.+++.+..+|. +-.+|...-....-.++.. .-..+
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHH
Confidence 356789999999999999999999655455444 35566777788888888887 7899988776666677776 66778
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-cCC-----hhHHHHHHHHHH
Q 004187 374 FLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR-LND-----DRNIRALFERAL 447 (770)
Q Consensus 374 f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~-~g~-----~~~Ar~lferaL 447 (770)
.++++..+..++|+|...-.+.... ++++.-......+++..--+-.+|....-+... .|- .+.-.+.....+
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F-~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFF-KDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI 214 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence 8899988888899998866555554 778888888888888766555677532211111 121 233344555667
Q ss_pred hCCCchhHHHHHHHHHHHHHH-cC
Q 004187 448 SSLPPEESIEVWKRFTQFEQM-YG 470 (770)
Q Consensus 448 ~~~p~~~~~~lw~~~~~fE~~-~G 470 (770)
...| ++..-|..+..+... .|
T Consensus 215 ~~vP--~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 215 LLVP--NNESAWNYLKGLLELDSG 236 (318)
T ss_pred HhCC--CCccHHHHHHHHHHhccC
Confidence 7788 677889888888775 55
No 257
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=94.77 E-value=0.46 Score=43.71 Aligned_cols=101 Identities=17% Similarity=0.346 Sum_probs=53.3
Q ss_pred HHHHHHHHH--cCCC-HHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHhCcH
Q 004187 269 FTYEQCLMY--LYHY-PDIWYDYATWNAKS---G-SIDAAIKVFQRALKALPDS---------EMLRYAFAELEESRGAI 332 (770)
Q Consensus 269 ~~ye~aL~~--~p~~-~~~w~~~a~~l~~~---g-~~e~A~~v~erAi~~~P~s---------~~lw~~~a~~~~~~g~~ 332 (770)
..|+..+.. ..++ -++|..|..+.... | .-..-..+++|+++..-++ ..+|+.|+++.
T Consensus 6 ~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------ 79 (125)
T smart00777 6 QAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------ 79 (125)
T ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------
Confidence 456666622 2233 36888888887753 2 3344566777777654322 34555555542
Q ss_pred HHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004187 333 AAAKKLYESLLTDSVN-TTALAHIQFIRFLRRTEGVEAARKYFL 375 (770)
Q Consensus 333 e~A~~iye~al~~~p~-~~~~~w~~~~~~~~r~~~~e~A~~~f~ 375 (770)
++.+++|.-+....-. ..+..|..++.++...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2244555544433221 134555555655555566666655554
No 258
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.1 Score=52.52 Aligned_cols=79 Identities=20% Similarity=0.129 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004187 298 IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDA 377 (770)
Q Consensus 298 ~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~A 377 (770)
+..|++.|.|||..+|.....|...|.++.+..+++.+..--.++++..|+ .....+.++.......+++.|+.++.+|
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555554 4445555555555555555555555555
No 259
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.69 E-value=22 Score=47.18 Aligned_cols=214 Identities=15% Similarity=0.204 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC---
Q 004187 239 QQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL-PD--- 314 (770)
Q Consensus 239 ~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~-P~--- 314 (770)
...+.|.++....+.+ +..+|+..+.-.|.+ ..-+++..+.|.++++.|+...|+.+++..+..+ |+
T Consensus 1668 ~~ge~wLqsAriaR~a-------G~~q~A~nall~A~e--~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~ 1738 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLA-------GHLQRAQNALLNAKE--SRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHT 1738 (2382)
T ss_pred hhHHHHHHHHHHHHhc-------ccHHHHHHHHHhhhh--cccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC
Confidence 3457898888887754 344554433333333 2378999999999999999999999999999653 43
Q ss_pred -------cH------HHHHHHHHHHHHhCcH--HHHHHHHHHHhccCCCCcHHHHHHHHHHHH------------HhcCH
Q 004187 315 -------SE------MLRYAFAELEESRGAI--AAAKKLYESLLTDSVNTTALAHIQFIRFLR------------RTEGV 367 (770)
Q Consensus 315 -------s~------~lw~~~a~~~~~~g~~--e~A~~iye~al~~~p~~~~~~w~~~~~~~~------------r~~~~ 367 (770)
+. ...+.++.+.+..+++ .+..+.|..+.+..+. ..+-++.++.++. +.|++
T Consensus 1739 ~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e-we~~hy~l~~yy~kll~~~~~~~~E~~g~~ 1817 (2382)
T KOG0890|consen 1739 PYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE-WEDKHYHLGKYYDKLLEDYKSNKMEKSGRV 1817 (2382)
T ss_pred CccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc-ccCceeeHHHHHHHHhhhhhcccccccccH
Confidence 11 1234556676766665 5677899999998874 2233333332222 12444
Q ss_pred HH---HHHHHHHHHcCCCC--------CHHHHHHHHHHHHh--cCC-------CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004187 368 EA---ARKYFLDARKSPNF--------TYHVYVAYALMAFC--QDK-------DPKLAHNVFEAGLKRFMHEPAYILEYA 427 (770)
Q Consensus 368 e~---A~~~f~~Al~~~~~--------~~~~yi~~a~le~~--~~g-------~~~~A~~ife~alk~~p~~~~~~l~ya 427 (770)
.. +...|.+++..+.. -...|+.++...+. ..+ +.+.--+..+.+++..|.. .++..|.
T Consensus 1818 ~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y-~f~ta~s 1896 (2382)
T KOG0890|consen 1818 LSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTY-QFYTAYS 1896 (2382)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcch-HHHHHHH
Confidence 44 55666788876543 24456665443222 012 2223334445555555553 5566888
Q ss_pred HHHHhcCC-hhHHHHHHHHHHh----CCCchhHHHHHHHHHHHH
Q 004187 428 DFLSRLND-DRNIRALFERALS----SLPPEESIEVWKRFTQFE 466 (770)
Q Consensus 428 ~~l~~~g~-~~~Ar~lferaL~----~~p~~~~~~lw~~~~~fE 466 (770)
+++.+.-. .++...++.+.+. ..| +..+|...+.+-
T Consensus 1897 QLlSRicH~~~dV~~vl~~II~~l~~~YP---qq~lW~~~a~~k 1937 (2382)
T KOG0890|consen 1897 QLLSRICHPNQDVARVLKHIIAKLVLAYP---QQTLWQSAALSK 1937 (2382)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHhCc---hHHHHHHHHHHh
Confidence 88888643 3445555555444 456 256898877664
No 260
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.62 E-value=8.3 Score=41.98 Aligned_cols=217 Identities=16% Similarity=0.022 Sum_probs=156.5
Q ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcH-----HHHHHHHHHHHHhCcHH
Q 004187 262 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA---LPDSE-----MLRYAFAELEESRGAIA 333 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~---~P~s~-----~lw~~~a~~~~~~g~~e 333 (770)
+.++.++..-+++-..-|+-+-+|.....-....|+++.|+++.+..... .++-. .|..+-+. ..-..+..
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~-s~ldadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM-SLLDADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH-HHhcCChH
Confidence 34556667778888999999999999999999999999999999876653 22221 12222111 11234567
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHH
Q 004187 334 AAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAH-NVFEAG 412 (770)
Q Consensus 334 ~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~-~ife~a 412 (770)
.|+..-..+++..|+ ....-+.-++.+.+.|++.++-.+++.+-+..+. ..++..|... + .|+.-..+ +-.++.
T Consensus 247 ~Ar~~A~~a~KL~pd-lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a--r-~gdta~dRlkRa~~L 321 (531)
T COG3898 247 SARDDALEANKLAPD-LVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA--R-SGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHhhcCCc-cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh--c-CCCcHHHHHHHHHHH
Confidence 788888999999998 5666677788889999999999999999998764 5555544332 3 36543332 222333
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcc
Q 004187 413 LKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM-YGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 413 lk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~-~Gd~~~~~k~~~R~~~~~~ 487 (770)
-...|++.+..+..++--+.-|++..||.--+.+...-|. ..++.-++.+|.. .||-..++.-.-+..+.=.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr---es~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR---ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch---hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 3457889888888888888999999999999998887662 2344455666664 5999999998888877543
No 261
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.53 E-value=0.068 Score=36.17 Aligned_cols=33 Identities=45% Similarity=0.607 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDS 315 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s 315 (770)
++++.+|.++...|+.++|++.|++.++..|+|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356677777777777777777777777777764
No 262
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=3.2 Score=42.10 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHh-CcHHHHHHHHHHHhccCCCC-----cH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEM------LRYAFAELEESR-GAIAAAKKLYESLLTDSVNT-----TA 351 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~------lw~~~a~~~~~~-g~~e~A~~iye~al~~~p~~-----~~ 351 (770)
.|...+..+. ..++++|.++++++|...-+-.. .++.+|.+|+.. .++++|...|+++-.....+ -.
T Consensus 76 ~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 3444444443 34888999999999987655433 344778888875 88999999999987654332 12
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC------HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT------YHV-YVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~------~~~-yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
..++..+.+....+++..|+.+|++.....-.+ ..- ++..+....+ ..|.-.+...+++....+|.
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~-~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC-KADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh-cccHHHHHHHHHHHHhcCCc
Confidence 355666777778899999999999887642211 111 2333333333 36777777788888888776
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.36 E-value=9.3 Score=41.47 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=56.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD----SEMLRYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~----s~~lw~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
.......|..++.+..+.|.++.|...+.++....+. .+.+.+.++.+....|+-.+|...++..++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456689999999999999999999999998886532 466778899999999999999999888887
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.29 E-value=2.5 Score=46.34 Aligned_cols=175 Identities=15% Similarity=0.069 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHH---hcCHHHHHHHHHHHHc-CCCCCHHHH
Q 004187 316 EMLRYAFAELEESRGAIAAAKKLYESLLTDSV---NTTALAHIQFIRFLRR---TEGVEAARKYFLDARK-SPNFTYHVY 388 (770)
Q Consensus 316 ~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p---~~~~~~w~~~~~~~~r---~~~~e~A~~~f~~Al~-~~~~~~~~y 388 (770)
.++...+...|....+++...++.+.+-.... .....+-.+|+-.+.| .|+.++|+.++..++. ......+.|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 44455666667778899999999988665521 1145677899988888 8999999999999554 444556766
Q ss_pred HHHHHHHH--------hcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChh----HHHHHH---HHHH-hCCCc
Q 004187 389 VAYALMAF--------CQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDR----NIRALF---ERAL-SSLPP 452 (770)
Q Consensus 389 i~~a~le~--------~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~----~Ar~lf---eraL-~~~p~ 452 (770)
--++.+.- ......++|...|.+|....++. ---++++-++...|... +.+++- ...+ +.-..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 66666531 11134789999999999988542 22245666666666432 333332 2222 11112
Q ss_pred hhHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcccccc
Q 004187 453 EESIEVWKRFTQFEQ--MYGDLDSTLKVEQRRKEALSRTGE 491 (770)
Q Consensus 453 ~~~~~lw~~~~~fE~--~~Gd~~~~~k~~~R~~~~~~~~~e 491 (770)
+....-|..--.+|. -.||.+.+.+..+++.+..+..++
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 344677776666665 469999999999999988774443
No 265
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.22 E-value=0.18 Score=52.41 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 399 DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 399 ~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
.|+.++|..+|+-+++..|+++++++.|+.|....++.-+|-++|-+||..-|
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 59999999999999999999999999999999999999999999999999877
No 266
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=1 Score=45.65 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=76.7
Q ss_pred ChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHhhccCcchHHHHH
Q 004187 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYIRFIRKVYEKKGTEGQEETR 115 (770)
Q Consensus 37 ~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~-~~lW~~y~~~~~~~~~~~~~~~~e~ar 115 (770)
.+..|...|-++|.++|+...+|.+-+..+++..+++.+..=..|++.+.|| +.-......+.....+ ...+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~------~~eaI 98 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG------YDEAI 98 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc------ccHHH
Confidence 5778999999999999999999999999999999999999999999999995 5666666666655443 45677
Q ss_pred HHHHHHHHhcCCCC--CChhhHHHHHHH
Q 004187 116 KAFDFMLSHVGSDI--SSGPIWLEYITF 141 (770)
Q Consensus 116 ~~~e~aL~~ig~dp--~s~~lW~~yi~f 141 (770)
..+.+|......++ .-.++|..+...
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 77777754433332 334588776554
No 267
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.93 E-value=0.11 Score=35.53 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPD 314 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~ 314 (770)
++|+.++.++...|++++|.+.|+++++..|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777777777777777777777777777663
No 268
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.80 E-value=4 Score=45.00 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=94.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc--------C------CC-----------CcHH---HHHHHHH
Q 004187 308 ALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD--------S------VN-----------TTAL---AHIQFIR 359 (770)
Q Consensus 308 Ai~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~--------~------p~-----------~~~~---~w~~~~~ 359 (770)
.+..+|-+.+..+.++.++..+|+.+.|.++.++||-. . .. .+.. +...++.
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 35779999999999999999999999988888888632 1 00 1222 3456777
Q ss_pred HHHHhcCHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-C----cHHHHHHHHHHH
Q 004187 360 FLRRTEGVEAARKYFLDARKSPNF-T---YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM-H----EPAYILEYADFL 430 (770)
Q Consensus 360 ~~~r~~~~e~A~~~f~~Al~~~~~-~---~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p-~----~~~~~l~ya~~l 430 (770)
.+.+.|.+..|.++.+-.+..++. + ...++.+-. .+ .++++--..+++....... + -|.+-+..+-.+
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A--Lr-s~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA--LR-SRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH--Hh-cCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 888899999999999999876554 2 333444311 23 3777766777766554211 1 223444444444
Q ss_pred HhcCCh---------------hHHHHHHHHHHhCCC
Q 004187 431 SRLNDD---------------RNIRALFERALSSLP 451 (770)
Q Consensus 431 ~~~g~~---------------~~Ar~lferaL~~~p 451 (770)
...++. +.|+..+.+|+..+|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 445555 889999999999888
No 269
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.68 E-value=2.9 Score=41.28 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCCcHHH---HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004187 302 IKVFQRALKALPDSEML---RYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHIQFIRFLRRTEGVEAARKYFLD 376 (770)
Q Consensus 302 ~~v~erAi~~~P~s~~l---w~~~a~~~~~~g~~e~A~~iye~al~~~p~~~--~~~w~~~~~~~~r~~~~e~A~~~f~~ 376 (770)
....++.+..++.+... -+.+|..+...+++++|...++.++....+.. ..+-..+++.....+.+++|...++.
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 33444555555544322 23345555666777777777777776544421 23344555566666666666666655
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 377 ARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 377 Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
.....-. ..+-.-.+.++... |+.++|++-|++++..+++
T Consensus 152 ~~~~~w~-~~~~elrGDill~k-g~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 152 IKEESWA-AIVAELRGDILLAK-GDKQEARAAYEKALESDAS 191 (207)
T ss_pred cccccHH-HHHHHHhhhHHHHc-CchHHHHHHHHHHHHccCC
Confidence 4332100 11111233344443 6666666666666666543
No 270
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.63 E-value=0.16 Score=34.55 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 004187 57 KFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ 88 (770)
Q Consensus 57 ~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~ 88 (770)
++|..++..+...|++++|+..|++++...|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 67999999999999999999999999998874
No 271
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.47 E-value=0.16 Score=34.83 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 317 MLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 317 ~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
.+|+.+|.++...|++++|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888888888888888888888888774
No 272
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.46 E-value=0.23 Score=51.73 Aligned_cols=68 Identities=24% Similarity=0.328 Sum_probs=55.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHH
Q 004187 289 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 357 (770)
Q Consensus 289 a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~ 357 (770)
|.-....|+.++|..+|+-|++..|++..+...++.|.+...++-+|..+|-++|...|. +.++....
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~-nseALvnR 190 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG-NSEALVNR 190 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC-chHHHhhh
Confidence 334456788899999999999999999999999999988888888899999999988887 55555443
No 273
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.72 E-value=0.85 Score=39.47 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 269 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS--EMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 269 ~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s--~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
..+++.+..+|.+.++.+.+|..+...|++++|.+.+-..+...++. ....-.+..++...|.-+....-|.+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 46788888888888888888888888888888888888888877644 44455555555555554444444433
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.46 E-value=0.13 Score=54.42 Aligned_cols=85 Identities=20% Similarity=0.041 Sum_probs=55.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 004187 294 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKY 373 (770)
Q Consensus 294 ~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~ 373 (770)
..|.+++|++.|.++|..+|.+..++-..+.++.+++....|..-+..++.++++ .+.-|-......+..|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 4567888888888888888888888877777777777777777777777777776 333333333333334555555554
Q ss_pred HHHHHc
Q 004187 374 FLDARK 379 (770)
Q Consensus 374 f~~Al~ 379 (770)
|..+.+
T Consensus 205 l~~a~k 210 (377)
T KOG1308|consen 205 LALACK 210 (377)
T ss_pred HHHHHh
Confidence 444444
No 275
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=4.1 Score=41.57 Aligned_cols=99 Identities=9% Similarity=0.002 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcH----------HHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKA--------LPDSE----------MLRYAFAELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~--------~P~s~----------~lw~~~a~~~~~~g~~e~A~~iye~al~~ 345 (770)
+..+-++-+...|++.+|...|..|+.. -|.+. .|+.+|+.++...|++-++.+.-...|.+
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3444555666677777777777777643 23332 24455666666666666666666666666
Q ss_pred CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC
Q 004187 346 SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF 383 (770)
Q Consensus 346 ~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~ 383 (770)
.|. +..+++..++.....=+.++|+.-|.++++..+.
T Consensus 260 ~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 260 HPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred CCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 655 5555555555444444555555555555555443
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.15 E-value=7 Score=41.41 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-chhHHHHHHHH
Q 004187 401 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP-PEESIEVWKRF 462 (770)
Q Consensus 401 ~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p-~~~~~~lw~~~ 462 (770)
..++|..+.+.+-+.+|+.+.++...++++.+.++.+.+..++.+++.... .+.+.+.....
T Consensus 102 ~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 102 SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 455666677777667788777777777777777777778888888887654 33444433333
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.98 E-value=1.3 Score=43.55 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 360 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~ 360 (770)
.-+.+|..+...+++++|...++.++..-.+. ..+-+.+|.+..+.|.+|+|.++++..-...- ...+-...++.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhH
Confidence 34667788888999999999999999764443 34556889999999999999998876433221 12334556788
Q ss_pred HHHhcCHHHHHHHHHHHHcCCC
Q 004187 361 LRRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 361 ~~r~~~~e~A~~~f~~Al~~~~ 382 (770)
+...|+-++||..|+++++...
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccC
Confidence 8999999999999999999753
No 278
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.52 E-value=0.4 Score=53.13 Aligned_cols=86 Identities=10% Similarity=-0.025 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004187 297 SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLD 376 (770)
Q Consensus 297 ~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~ 376 (770)
.++.|+..|.+||...|++..++-..+..+.+.+++..|..-+.++++..|. ....|+..+......+.+.+|...|+.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 4555555555555555555555444444444455555555555555555544 334444444444444444444444444
Q ss_pred HHcCCCC
Q 004187 377 ARKSPNF 383 (770)
Q Consensus 377 Al~~~~~ 383 (770)
.....|.
T Consensus 98 ~~~l~Pn 104 (476)
T KOG0376|consen 98 VKKLAPN 104 (476)
T ss_pred hhhcCcC
Confidence 4444333
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.43 E-value=46 Score=41.47 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004187 270 TYEQCLMYLYHYP----DIWYDYATWNAKSGSIDAAIKVFQR 307 (770)
Q Consensus 270 ~ye~aL~~~p~~~----~~w~~~a~~l~~~g~~e~A~~v~er 307 (770)
+|..+|.....+. .++..||..+.+...+++|.-.|++
T Consensus 923 Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~ 964 (1265)
T KOG1920|consen 923 LYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYER 964 (1265)
T ss_pred cchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 5777776554333 4777788888888887777555543
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.29 E-value=0.32 Score=33.20 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 004187 317 MLRYAFAELEESRGAIAAAKKLYESLLTDSV 347 (770)
Q Consensus 317 ~lw~~~a~~~~~~g~~e~A~~iye~al~~~p 347 (770)
.+|+.+|.++...|++++|.+.|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677888888888888888888888887665
No 281
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.25 E-value=0.27 Score=49.37 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=51.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 289 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 289 a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
+..+.+.++.+.|.+.|.+++...|+-..-|+.++.+.++.|+++.|.+-|++.++.+|.
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 445667788888889999999999988888999999988999999999999998888886
No 282
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.02 E-value=25 Score=41.48 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=11.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHH
Q 004187 358 IRFLRRTEGVEAARKYFLDAR 378 (770)
Q Consensus 358 ~~~~~r~~~~e~A~~~f~~Al 378 (770)
.++..-.+.++.|-.+|+-..
T Consensus 372 ~rledir~emDd~~~~f~lL~ 392 (1102)
T KOG1924|consen 372 GRLEDIRAEMDDANEVFELLA 392 (1102)
T ss_pred hHHHhhhhhhccHHHHHHHHH
Confidence 344444455666666666543
No 283
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.00 E-value=22 Score=41.21 Aligned_cols=97 Identities=16% Similarity=0.063 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
+|+-+-+..-..-+.....+.++.....+.-|.++|.+.=.. -...+++...++.++|-.+-++.-+.
T Consensus 735 lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~---- 802 (1081)
T KOG1538|consen 735 LIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEF---- 802 (1081)
T ss_pred HHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccc----
Confidence 444444444444455555566666666666666666543110 01234555667888887776654443
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDAR 378 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al 378 (770)
..++|+.|++++...+++++|.+.|-+|-
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 34699999999999999999999888774
No 284
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.39 E-value=0.52 Score=31.66 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 387 VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 387 ~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
+++..|.+.... |+.++|.++|++.++.+|+
T Consensus 2 a~~~~a~~~~~~-g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKL-GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHc-cCHHHHHHHHHHHHHHCcC
Confidence 344555555553 6777777777777777665
No 285
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.27 E-value=0.44 Score=52.87 Aligned_cols=99 Identities=16% Similarity=0.034 Sum_probs=82.5
Q ss_pred HhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004187 328 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN 407 (770)
Q Consensus 328 ~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ 407 (770)
..++++.|...|.++|..+|+ .+..|-..+....+.+++-.|..=+.+|++..++....|+..|..--.. +.+.+|+.
T Consensus 16 ~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l-~~~~~A~~ 93 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL-GEFKKALL 93 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH-HHHHHHHH
Confidence 446889999999999999997 5666666777777889999999999999999998888888876654443 88999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHH
Q 004187 408 VFEAGLKRFMHEPAYILEYAD 428 (770)
Q Consensus 408 ife~alk~~p~~~~~~l~ya~ 428 (770)
.|+.+.+..|+++.+...+..
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHH
Confidence 999999999999887654443
No 286
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.92 E-value=0.53 Score=30.30 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPD 314 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~ 314 (770)
.+|+.++.++...++++.|...|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34556666666666666666666666665553
No 287
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.68 E-value=35 Score=40.54 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=107.3
Q ss_pred HHHHHHHHHHcCCC----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--cHHH----HHHHHHHHHHhCcHHHHH
Q 004187 268 IFTYEQCLMYLYHY----PDIWYDYATWNA-KSGSIDAAIKVFQRALKALPD--SEML----RYAFAELEESRGAIAAAK 336 (770)
Q Consensus 268 ~~~ye~aL~~~p~~----~~~w~~~a~~l~-~~g~~e~A~~v~erAi~~~P~--s~~l----w~~~a~~~~~~g~~e~A~ 336 (770)
+..++-++...+-. ..+.+.+|.+|. ...+++.|...++|++..+-. -.++ .+.++.++.+.+... |.
T Consensus 41 i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~ 119 (608)
T PF10345_consen 41 IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-AL 119 (608)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HH
Confidence 34566666433333 357899999998 578999999999999988743 3333 335577777777666 88
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHH-----HHhcCHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHh---cCCCHHHHH
Q 004187 337 KLYESLLTDSVNTTALAHIQFIRFL-----RRTEGVEAARKYFLDARKSP--NFTYHVYVAYALMAFC---QDKDPKLAH 406 (770)
Q Consensus 337 ~iye~al~~~p~~~~~~w~~~~~~~-----~r~~~~e~A~~~f~~Al~~~--~~~~~~yi~~a~le~~---~~g~~~~A~ 406 (770)
...+++++.........|....+|. ...++...|.+.++...... ...+.+++.+..++.. ..+..+.+.
T Consensus 120 ~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~ 199 (608)
T PF10345_consen 120 KNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVL 199 (608)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 8999888765543334554444433 22368888999998887654 3455555554333321 135566666
Q ss_pred HHHHHHHHhC----------CCcHHHHHHHHHHHH--hcCChhHHHHHHH
Q 004187 407 NVFEAGLKRF----------MHEPAYILEYADFLS--RLNDDRNIRALFE 444 (770)
Q Consensus 407 ~ife~alk~~----------p~~~~~~l~ya~~l~--~~g~~~~Ar~lfe 444 (770)
+...++.... +....+|....++.. ..|++++++..+.
T Consensus 200 ~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~ 249 (608)
T PF10345_consen 200 ELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK 249 (608)
T ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666664321 112345555555443 4566666665443
No 288
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.21 E-value=14 Score=42.20 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=88.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C----------------CCcHHH---HHHHHHHHHHhCcHH
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-----L----------------PDSEML---RYAFAELEESRGAIA 333 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~-----~----------------P~s~~l---w~~~a~~~~~~g~~e 333 (770)
.|.|.+..++.|.+...+|+.+.|.++.+|++=. . |.|..+ .+.|...+.+.|-..
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 3678899999999999999998888888887632 1 222222 345566677778888
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHH-HHHHhcCHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCC--CHHHHH
Q 004187 334 AAKKLYESLLTDSVNTTALAHIQFIR-FLRRTEGVEAARKYFLDARKSPNF----TYHVYVAYALMAFCQDK--DPKLAH 406 (770)
Q Consensus 334 ~A~~iye~al~~~p~~~~~~w~~~~~-~~~r~~~~e~A~~~f~~Al~~~~~----~~~~yi~~a~le~~~~g--~~~~A~ 406 (770)
.|.+.-+-+++.+|..++..-..+++ |..|..+|+=.+.+++.....+.. ++..-+.+|.+...... +...|.
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~ 439 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSAL 439 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHH
Confidence 88888888888887644444444443 455667777777777666432211 12222233333333212 245677
Q ss_pred HHHHHHHHhCCC
Q 004187 407 NVFEAGLKRFMH 418 (770)
Q Consensus 407 ~ife~alk~~p~ 418 (770)
..+.+|++.+|.
T Consensus 440 ~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 440 NALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHhCcH
Confidence 777777777764
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.15 E-value=0.77 Score=32.08 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRAL 309 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi 309 (770)
|..+|.++.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666643
No 290
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=7.3 Score=41.57 Aligned_cols=90 Identities=16% Similarity=0.043 Sum_probs=41.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 004187 358 IRFLRRTEGVEAARKYFLDARKSP----NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL 433 (770)
Q Consensus 358 ~~~~~r~~~~e~A~~~f~~Al~~~----~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~ 433 (770)
++.+....+++.|+..|.++++.. ....-+|.+.|...+.. |++-.|++=..++++..|+....++.=+.++..+
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 334444444445555554444321 11233344444444443 4555555555555555555554444444444455
Q ss_pred CChhHHHHHHHHHHh
Q 004187 434 NDDRNIRALFERALS 448 (770)
Q Consensus 434 g~~~~Ar~lferaL~ 448 (770)
+.+..|...-+..+.
T Consensus 167 e~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHhhhhh
Confidence 554444444444444
No 291
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.73 E-value=6.7 Score=40.09 Aligned_cols=98 Identities=11% Similarity=0.035 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcC---------C---------CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKS---------P---------NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~---------~---------~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk 414 (770)
+.-+-++-+.+.|++++|...|..|+.. + .....++++++++.... +++=++.+.....|+
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~-~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK-EEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH-HHHHHHHHHHHHHHh
Confidence 3344455556667777777777776521 1 11245566776665554 777788888888888
Q ss_pred hCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 415 RFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 415 ~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
..|++...++..+......=+..+|+.=|..+|...|
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 8999888888888777776678888888888888776
No 292
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.66 E-value=12 Score=42.48 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
.+.....+.|+.+.|-.+.|+++. ++....|.+ ..+.|+++.|.++.+. .+ ....|.++++.+
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A~~~a~~-----~~-~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIALEIAKE-----LD-DPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHHHHHCCC-----CS-THHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHHHHHHHh-----cC-cHHHHHHHHHHH
Confidence 455778889999999887777654 234444443 3578888888775422 11 467999999999
Q ss_pred HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHH
Q 004187 362 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRA 441 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~ 441 (770)
.++|+++-|..+|+++-. +. .+. ++|...|+.+.-.++-+.+.+..-.+..+. .....|+.++...
T Consensus 358 L~~g~~~lAe~c~~k~~d-----~~---~L~-lLy~~~g~~~~L~kl~~~a~~~~~~n~af~-----~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD-----FS---GLL-LLYSSTGDREKLSKLAKIAEERGDINIAFQ-----AALLLGDVEECVD 423 (443)
T ss_dssp HHTTBHHHHHHHHHHCT------HH---HHH-HHHHHCT-HHHHHHHHHHHHHTT-HHHHHH-----HHHHHT-HHHHHH
T ss_pred HHcCCHHHHHHHHHhhcC-----cc---ccH-HHHHHhCCHHHHHHHHHHHHHccCHHHHHH-----HHHHcCCHHHHHH
Confidence 999999999999998643 22 222 234446888888887777665543232221 2223467666666
Q ss_pred HHHH
Q 004187 442 LFER 445 (770)
Q Consensus 442 lfer 445 (770)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.30 E-value=5.5 Score=39.14 Aligned_cols=63 Identities=17% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~ 345 (770)
.+|..+|.++.+.|+.+.|.+.|.++...+-.. .++++....+....+++..+....+++-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467788888888888888888888877766443 455666666666677777777766665443
No 294
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.13 E-value=22 Score=40.77 Aligned_cols=154 Identities=16% Similarity=0.068 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHhC------------CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc-----CC----C-------
Q 004187 297 SIDAAIKVFQRALKAL------------PDSEMLRYAFAELEESRGAIAAAKKLYESLLTD-----SV----N------- 348 (770)
Q Consensus 297 ~~e~A~~v~erAi~~~------------P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~-----~p----~------- 348 (770)
.+++|...|.-|+... |-+..-.+.++.+...+|+.+.+..+.+++|=. .| .
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 4667777777777653 334455667888888899988877777766521 11 0
Q ss_pred ----C---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHh
Q 004187 349 ----T---TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNVFEAG-----LKR 415 (770)
Q Consensus 349 ----~---~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~-~~~~yi~~a~le~~~~g~~~~A~~ife~a-----lk~ 415 (770)
. .-.+.+.|+..+.+.|-+..|.++.+-.+..++. ++-.-+.+..+..-...++.=-+..++.. +..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~ 412 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ 412 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh
Confidence 0 1234457788888889999999999999887654 22222222221111124444444555444 333
Q ss_pred CCCcHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCC
Q 004187 416 FMHEPAYILEYADFLSRLND---DRNIRALFERALSSLP 451 (770)
Q Consensus 416 ~p~~~~~~l~ya~~l~~~g~---~~~Ar~lferaL~~~p 451 (770)
.|+- .+=+..+.|+....+ -..|+..+.+|+..+|
T Consensus 413 ~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 413 LPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred cCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 4553 344466777777765 4678899999999888
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.00 E-value=0.77 Score=32.09 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 319 RYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 319 w~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
|..+|.++.+.|++++|.++|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677777777788888887777553
No 296
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.60 E-value=80 Score=38.86 Aligned_cols=116 Identities=10% Similarity=0.098 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--C------CcHHHHH
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF--M------HEPAYIL 424 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~--p------~~~~~~l 424 (770)
-.-.+++++...|-+++.+.+++.++...+.+...+..+|.+..+ -++++-++.++.-.... | +...+|.
T Consensus 1281 eLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk--ykp~km~EHl~LFwsRvNipKviRA~eqahlW~ 1358 (1666)
T KOG0985|consen 1281 ELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK--YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWS 1358 (1666)
T ss_pred hHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 344667788888999999999999998887766677777766433 35666666655444331 1 2456787
Q ss_pred HHHHHHHhcCChhHHHH-HHHH---HHhC--C----CchhHHHHHHHHHHHHHHcC
Q 004187 425 EYADFLSRLNDDRNIRA-LFER---ALSS--L----PPEESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 425 ~ya~~l~~~g~~~~Ar~-lfer---aL~~--~----p~~~~~~lw~~~~~fE~~~G 470 (770)
...-++.+..++++|-. +.+. +... + ..-.+.+++++.+.|...+.
T Consensus 1359 ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kVaNvElyYkAi~FYl~~~ 1414 (1666)
T KOG0985|consen 1359 ELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKVANVELYYKAIQFYLDFH 1414 (1666)
T ss_pred HHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 77777777777777643 2222 1110 0 01134678888888887654
No 297
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.43 E-value=3.5 Score=45.92 Aligned_cols=138 Identities=9% Similarity=0.072 Sum_probs=95.2
Q ss_pred HHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH-cCCC-------C-CHHHHHHHHHH
Q 004187 324 ELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDAR-KSPN-------F-TYHVYVAYALM 394 (770)
Q Consensus 324 ~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al-~~~~-------~-~~~~yi~~a~l 394 (770)
.++.+..+...+..--+.++....+ .+.....-.+++.-+|++.+|.+++...- ...+ + ..-.|.+++.|
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~-s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQD-SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCC-CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 3344444444444334444444343 45566667788888999999988876542 1111 1 23346777888
Q ss_pred HHhcCCCHHHHHHHHHHHHHh---------CC---------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHH
Q 004187 395 AFCQDKDPKLAHNVFEAGLKR---------FM---------HEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESI 456 (770)
Q Consensus 395 e~~~~g~~~~A~~ife~alk~---------~p---------~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~ 456 (770)
.|.. +.+..+...|.+++.. .| ..-++.++.+-.+.+.|++-.|.++|..++..+. .++
T Consensus 293 h~~~-~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh--~nP 369 (696)
T KOG2471|consen 293 HYQL-GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH--RNP 369 (696)
T ss_pred eeeh-hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh--cCc
Confidence 7775 8899999999999961 01 1236777888899999999999999999999876 678
Q ss_pred HHHHHHHHH
Q 004187 457 EVWKRFTQF 465 (770)
Q Consensus 457 ~lw~~~~~f 465 (770)
.+|.++++-
T Consensus 370 rlWLRlAEc 378 (696)
T KOG2471|consen 370 RLWLRLAEC 378 (696)
T ss_pred HHHHHHHHH
Confidence 999999874
No 298
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.41 E-value=28 Score=40.87 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHh----C-cHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH-h
Q 004187 296 GSIDAAIKVFQRALKA-----LPDSEMLRYAFAELEESR----G-AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR-T 364 (770)
Q Consensus 296 g~~e~A~~v~erAi~~-----~P~s~~lw~~~a~~~~~~----g-~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r-~ 364 (770)
.+.+.|...|+++... .-......+.++.+|.+. . +.+.|..+|.++-..... ..-+.++.++.. .
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~---~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP---DAQYLLGVLYETGT 339 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHcCC
Confidence 4788888888888762 001222344566666653 2 566677777777666543 333333333322 1
Q ss_pred --cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHhC
Q 004187 365 --EGVEAARKYFLDARKSPNFTYHVYVAYALMAFC---QDKDPKLAHNVFEAGLKRF 416 (770)
Q Consensus 365 --~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~---~~g~~~~A~~ife~alk~~ 416 (770)
.++..|-++|..|.+.+. ..+.+.++.++.. ...+.+.|...|.++..+.
T Consensus 340 ~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKAGH--ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred ccccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 356677777777777654 3556666665443 1236677777777777766
No 299
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.28 E-value=9.2 Score=40.83 Aligned_cols=92 Identities=15% Similarity=-0.060 Sum_probs=46.7
Q ss_pred HHHHHhCcHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004187 324 ELEESRGAIAAAKKLYESLLTDSVNT---TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK 400 (770)
Q Consensus 324 ~~~~~~g~~e~A~~iye~al~~~p~~---~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g 400 (770)
+.+.+.++|..|+..|.+.|+....+ +.-+|.+.+....-.|++..|+.=..+|++..+++...|+.-|...+.+ +
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL-e 167 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL-E 167 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH-H
Confidence 33334444555555555555432221 1223334443334445555666666666666666666666666655554 5
Q ss_pred CHHHHHHHHHHHHHhC
Q 004187 401 DPKLAHNVFEAGLKRF 416 (770)
Q Consensus 401 ~~~~A~~ife~alk~~ 416 (770)
.++.|....+.++...
T Consensus 168 ~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 168 RFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHhhhhhhh
Confidence 5555666655554443
No 300
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.21 E-value=79 Score=38.35 Aligned_cols=218 Identities=15% Similarity=0.024 Sum_probs=132.3
Q ss_pred HHHHHHHHHcC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHH---HH-HHHHHHHHhCcHHH
Q 004187 269 FTYEQCLMYLY-----HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS-----EML---RY-AFAELEESRGAIAA 334 (770)
Q Consensus 269 ~~ye~aL~~~p-----~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s-----~~l---w~-~~a~~~~~~g~~e~ 334 (770)
....++++..| .+|.+-+.+|-.+....++.+|..+..++-...|.. ..+ |. ..|.+....|+++.
T Consensus 397 sll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~ 476 (894)
T COG2909 397 SLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEE 476 (894)
T ss_pred HHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHH
Confidence 35556666555 578888899988999999999999999988766541 111 22 33666677899999
Q ss_pred HHHHHHHHhccCCCC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC----CCCCHHHHHHH--HHHHHhcCCCHH-
Q 004187 335 AKKLYESLLTDSVNT----TALAHIQFIRFLRRTEGVEAARKYFLDARKS----PNFTYHVYVAY--ALMAFCQDKDPK- 403 (770)
Q Consensus 335 A~~iye~al~~~p~~----~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~----~~~~~~~yi~~--a~le~~~~g~~~- 403 (770)
|.++-+.++..-|.. ..-+....+....-.|+++.|+.+.+++.+. +.....+|..+ +.++.. +|...
T Consensus 477 a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~-qGq~~~ 555 (894)
T COG2909 477 AEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA-QGQVAR 555 (894)
T ss_pred HHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH-hhHHHH
Confidence 999999998876542 2234556666667789999999999888765 33345555554 333334 36222
Q ss_pred -HHHHHHHHHHH----hCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHHcCCHH
Q 004187 404 -LAHNVFEAGLK----RFMHEPAYILEYADFLSR----LNDDRNIRALFERALSSLPP-EESIEVWKRFTQFEQMYGDLD 473 (770)
Q Consensus 404 -~A~~ife~alk----~~p~~~~~~l~ya~~l~~----~g~~~~Ar~lferaL~~~p~-~~~~~lw~~~~~fE~~~Gd~~ 473 (770)
+..+.|...-. ..|-..-....++..+.. .+...++|.-++-.....+. -.+-....-++..+...||++
T Consensus 556 a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~ 635 (894)
T COG2909 556 AEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLD 635 (894)
T ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHH
Confidence 22222222211 122222223333333322 23445666666655544441 112222245667777889999
Q ss_pred HHHHHHHHHHHhcc
Q 004187 474 STLKVEQRRKEALS 487 (770)
Q Consensus 474 ~~~k~~~R~~~~~~ 487 (770)
.+..-..+....+.
T Consensus 636 ~A~~~l~~~~~l~~ 649 (894)
T COG2909 636 KALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHHHHhc
Confidence 88887777776665
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.84 E-value=16 Score=40.71 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=43.0
Q ss_pred cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-------------cHHHHHHH--HHH
Q 004187 365 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH-------------EPAYILEY--ADF 429 (770)
Q Consensus 365 ~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~-------------~~~~~l~y--a~~ 429 (770)
++++..........+..+....+-+-.|...|+. |.+++|...+..-...-.. -.++|+.. ++.
T Consensus 59 ~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~s 137 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ-KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHS 137 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHH
Confidence 3344333333333333333333333344444553 6666666555443332100 13455544 456
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 004187 430 LSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 430 l~~~g~~~~Ar~lferaL~~ 449 (770)
++..|++.++|.++++.+..
T Consensus 138 LIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 138 LIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHhcCCcchHHHHHHHHHHH
Confidence 67778888888888887764
No 302
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.83 E-value=60 Score=36.62 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=107.1
Q ss_pred HHcCCHHHHHHHHHHHHHh---CCC-------cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHH--HHHHHH
Q 004187 293 AKSGSIDAAIKVFQRALKA---LPD-------SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAH--IQFIRF 360 (770)
Q Consensus 293 ~~~g~~e~A~~v~erAi~~---~P~-------s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w--~~~~~~ 360 (770)
.-.|++.+|++....+..- .|. .+.+++.+|.+-...+.++.|...|..+++........++ ..++-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 3458888887766665543 455 2445666676666778899999999998886554222222 355666
Q ss_pred HHHhcCHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc--HHH----HHHHH
Q 004187 361 LRRTEGVEAARKYFLDARKSPNF-------TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE--PAY----ILEYA 427 (770)
Q Consensus 361 ~~r~~~~e~A~~~f~~Al~~~~~-------~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~--~~~----~l~ya 427 (770)
|.+.++-+..-++.+..--.+.. ...+++..|.+.+.. +++.+|+....+.++.-... -.+ +.-..
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q-n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ-NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLS 492 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 77777666655555544322111 244566677777775 99999999999999875221 112 22333
Q ss_pred HHHHhcCChhHHHHHHHHHHh---CCCchhHHHHHHHH
Q 004187 428 DFLSRLNDDRNIRALFERALS---SLPPEESIEVWKRF 462 (770)
Q Consensus 428 ~~l~~~g~~~~Ar~lferaL~---~~p~~~~~~lw~~~ 462 (770)
......|+..+++....-+++ +.| +-++.+|..-
T Consensus 493 ~v~lslgn~~es~nmvrpamqlAkKi~-Di~vqLws~s 529 (629)
T KOG2300|consen 493 HVFLSLGNTVESRNMVRPAMQLAKKIP-DIPVQLWSSS 529 (629)
T ss_pred HHHHHhcchHHHHhccchHHHHHhcCC-CchHHHHHHH
Confidence 444567888889888887776 344 5678888653
No 303
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.78 E-value=65 Score=39.56 Aligned_cols=176 Identities=12% Similarity=0.143 Sum_probs=99.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC--CCCcHHHHHH
Q 004187 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS--VNTTALAHIQ 356 (770)
Q Consensus 279 p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~--p~~~~~~w~~ 356 (770)
.+.|.+|.++|....+.|...+|++-|-+| +++.-+....+.-.+.|.+++....+.-+-+.. |.-...+-++
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFA 1175 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 367899999999999999999998888654 444555566667777888888777776555432 2213344445
Q ss_pred HHHHHH------------------------HhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCCHHHHHH--
Q 004187 357 FIRFLR------------------------RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ---DKDPKLAHN-- 407 (770)
Q Consensus 357 ~~~~~~------------------------r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~---~g~~~~A~~-- 407 (770)
|++..+ ..+.+++|+-+|... .-|..+|.-+.++ +|-.+.||+
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 544322 112233333333221 1122222222222 122333332
Q ss_pred ---HHHHHHHhCCC----------------cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Q 004187 408 ---VFEAGLKRFMH----------------EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM 468 (770)
Q Consensus 408 ---ife~alk~~p~----------------~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~ 468 (770)
++...--.+-+ .++=+-..+.++...|-+++...++|.+|..-. -|..++-.++.+..+
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLER--AHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLER--AHMGMFTELAILYSK 1325 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhH--HHHHHHHHHHHHHHh
Confidence 22211111111 133445677888899999999999999997633 455556555555554
Q ss_pred c
Q 004187 469 Y 469 (770)
Q Consensus 469 ~ 469 (770)
+
T Consensus 1326 y 1326 (1666)
T KOG0985|consen 1326 Y 1326 (1666)
T ss_pred c
Confidence 4
No 304
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.24 E-value=13 Score=39.51 Aligned_cols=121 Identities=17% Similarity=0.086 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~ 362 (770)
..-+...+...+..+..+-++.-..|++.+|+....+..+|. +...-+-+|.++|+++|+.... -+.-.+-..
T Consensus 185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~-----~yr~sqq~q 257 (556)
T KOG3807|consen 185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAE--EEATTIVDAERLFKQALKAGET-----IYRQSQQCQ 257 (556)
T ss_pred ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHH-----HHhhHHHHh
Confidence 334444455556666777777778889999998888777654 3445577889999998875432 111111111
Q ss_pred HhcCHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 363 RTEGVEAARKYFLDARKSPNFTYHVYVAY--ALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 363 r~~~~e~A~~~f~~Al~~~~~~~~~yi~~--a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
.++..- .+....+.+..+|++. |.+..+ .|+..+|.++|+...+.+|-
T Consensus 258 h~~~~~-------da~~rRDtnvl~YIKRRLAMCARk-lGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 258 HQSPQH-------EAQLRRDTNVLVYIKRRLAMCARK-LGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred hhccch-------hhhhhcccchhhHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhccH
Confidence 111111 1111123345666663 333334 38888888888887777764
No 305
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.04 E-value=0.53 Score=50.04 Aligned_cols=86 Identities=15% Similarity=-0.032 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
.+..++..|-.++..+|....++-.-+.++...++...|+.-|..|+..+|++..-+-..+..+..+|++++|...+..+
T Consensus 129 ~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a 208 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALA 208 (377)
T ss_pred chhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999776555566667789999999999999
Q ss_pred hccCCC
Q 004187 343 LTDSVN 348 (770)
Q Consensus 343 l~~~p~ 348 (770)
++++-+
T Consensus 209 ~kld~d 214 (377)
T KOG1308|consen 209 CKLDYD 214 (377)
T ss_pred Hhcccc
Confidence 887655
No 306
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.28 E-value=74 Score=36.19 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
+--+++.++++|.++ ..++--.+++|.++.+-++...--.++..|++ ++-+++...|.+++
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 334455555555555 33444455555555555554444445555544 34444555554444
No 307
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.49 E-value=8.6 Score=33.20 Aligned_cols=78 Identities=17% Similarity=0.062 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004187 406 HNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRK 483 (770)
Q Consensus 406 ~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~ 483 (770)
..-++..+..+|++....+.++..+...|+++.|...+-.+++..+..+....-..++.+-...|+-+-+..-++|..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 456778888899999999999999999999999999888888876533333333444444445566544444444443
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.25 E-value=5.7 Score=41.85 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=50.5
Q ss_pred ChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-------CChHHHHHHHHH
Q 004187 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC-------LQVPLWRCYIRF 98 (770)
Q Consensus 37 ~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~-------p~~~lW~~y~~~ 98 (770)
.++.+...+++++..+|.+...|..+++.+++.|+...|+..|++.-... |...+|..|.+.
T Consensus 168 ~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 168 RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999875431 334555555554
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.58 E-value=50 Score=38.71 Aligned_cols=174 Identities=16% Similarity=0.086 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----hCcHHHHHHHHHHHhc-------cCCCCcHHHHHHHHHHHHHh--
Q 004187 299 DAAIKVFQRALKALPDSEMLRYAFAELEES-----RGAIAAAKKLYESLLT-------DSVNTTALAHIQFIRFLRRT-- 364 (770)
Q Consensus 299 e~A~~v~erAi~~~P~s~~lw~~~a~~~~~-----~g~~e~A~~iye~al~-------~~p~~~~~~w~~~~~~~~r~-- 364 (770)
..|.+.|+.+.+.. +......++.++.. ..+.+.|...|+.+.. .. ...+...++..+.+.
T Consensus 229 ~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45666666666542 33333344444432 3677888888887766 22 123455666666653
Q ss_pred --c-CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-c---CC
Q 004187 365 --E-GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD--KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR-L---ND 435 (770)
Q Consensus 365 --~-~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~--g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~-~---g~ 435 (770)
. +.+.|..+|.++.+.+..... ..++.+..... .|...|.+.|..+.+.--..+.+ ..+.++.. . -+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~--~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIY--RLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHH--HHHHHHHhCCCcCCC
Confidence 2 678899999999998775444 44455544433 46789999999998765333333 33433332 2 36
Q ss_pred hhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004187 436 DRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484 (770)
Q Consensus 436 ~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~ 484 (770)
.++|..+|.++.....+ ...|..-...|...|......-.+..+.+
T Consensus 380 ~~~A~~~~k~aA~~g~~---~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNP---SAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHHHccCh---hhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 78999999999987531 12333333334333555554444444443
No 310
>PRK10941 hypothetical protein; Provisional
Probab=83.44 E-value=11 Score=39.60 Aligned_cols=62 Identities=6% Similarity=-0.036 Sum_probs=55.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 288 YATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 288 ~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
+-..+.+.++++.|+.+.++.+...|++..-|-..|.++.+.|.+..|..-++..++.+|++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 34567788899999999999999999999999999999999999999999999999999874
No 311
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.42 E-value=34 Score=39.65 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 400 KDPKLAHNVFEAGLKRFMH-EPAYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 400 g~~~~A~~ife~alk~~p~-~~~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
++..+|..+-++ .|. .+++++-|++|+.+..++++|.+.|-+|=+
T Consensus 787 ~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 787 QRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred ccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 677777665443 333 345677777777777777777777766543
No 312
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.82 E-value=20 Score=36.40 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC
Q 004187 333 AAAKKLYESLLTDSVN-----TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT 384 (770)
Q Consensus 333 e~A~~iye~al~~~p~-----~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~ 384 (770)
..|.+.|++++..... +...+.+..+.+.+|.|++++|..+|.+++......
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3455666666654332 123456667788889999999999999999876543
No 313
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.49 E-value=2.6 Score=26.74 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 004187 318 LRYAFAELEESRGAIAAAKKLYESLLTDSV 347 (770)
Q Consensus 318 lw~~~a~~~~~~g~~e~A~~iye~al~~~p 347 (770)
.|+.+|.++...+++++|...|+++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 466677777777777777777777776654
No 314
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.69 E-value=7.3 Score=44.37 Aligned_cols=99 Identities=16% Similarity=0.044 Sum_probs=59.6
Q ss_pred HHHHHH-hCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 004187 323 AELEES-RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD 401 (770)
Q Consensus 323 a~~~~~-~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~ 401 (770)
|-+|.+ .|+...|.+++.+++...|....--.+++++.....+-.-.|-.++.+++.......-.++..+.+...+ ++
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l-~~ 691 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL-KN 691 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH-hh
Confidence 444433 5777777777777777666532223456666666666566677777776665444344444444443343 67
Q ss_pred HHHHHHHHHHHHHhCCCcHHH
Q 004187 402 PKLAHNVFEAGLKRFMHEPAY 422 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~ 422 (770)
++.|.+.|+.++++.|++++.
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhh
Confidence 777777777777777776644
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.47 E-value=23 Score=35.34 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHhcCChhHHH
Q 004187 366 GVEAARKYFLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH----EPAYILEYADFLSRLNDDRNIR 440 (770)
Q Consensus 366 ~~e~A~~~f~~Al~~~~~-~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~----~~~~~l~ya~~l~~~g~~~~Ar 440 (770)
+-+.|+..|-++-..+.. +..+...+|.+.. ..|.++|+.++-+++..... +++++...+..+..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345566666665544332 4555666665533 25777777777777776432 4677777777777777776664
No 316
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.82 E-value=7.4 Score=38.24 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 422 YILEYADFLSRLNDDRNIRALFERALSSLP-PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 422 ~~l~ya~~l~~~g~~~~Ar~lferaL~~~p-~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.+...++|+.+.|+.++|...|.++...+. .....+++...+..-..+||...+.+...++.....
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 445556666666666666666666555442 233455666666655556666666665555555554
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.62 E-value=1.2e+02 Score=37.01 Aligned_cols=195 Identities=13% Similarity=-0.021 Sum_probs=111.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHhCcHHHHHHHHHHHhccCC---CCcHHHHHHHH
Q 004187 287 DYATWNAKSGSIDAAIKVFQRALKALPDSE-----MLRYAFAELEESRGAIAAAKKLYESLLTDSV---NTTALAHIQFI 358 (770)
Q Consensus 287 ~~a~~l~~~g~~e~A~~v~erAi~~~P~s~-----~lw~~~a~~~~~~g~~e~A~~iye~al~~~p---~~~~~~w~~~~ 358 (770)
..|.+....|++++|.++.++++...|.+. .+....+....-.|++++|+.+...+.+... .....+|..+.
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~ 542 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQ 542 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 345556678999999999999999998763 3445567777778999999988877765421 11345666553
Q ss_pred --HHHHHhcC--HHHHHHHHHHHHcC----CCC-CHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHH---H
Q 004187 359 --RFLRRTEG--VEAARKYFLDARKS----PNF-TYH--VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI---L 424 (770)
Q Consensus 359 --~~~~r~~~--~e~A~~~f~~Al~~----~~~-~~~--~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~---l 424 (770)
..+..+|. .+.....|...... .+. .+. ++........+..+...+++.-++-+....|..-..+ +
T Consensus 543 ~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~ 622 (894)
T COG2909 543 QSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALS 622 (894)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHH
Confidence 34455562 22333334333221 121 111 1111111111223555666776776666665544333 3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHH-----HHHHHHcCCHHHHHHHHHH
Q 004187 425 EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRF-----TQFEQMYGDLDSTLKVEQR 481 (770)
Q Consensus 425 ~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~-----~~fE~~~Gd~~~~~k~~~R 481 (770)
..+.++...|+.++|...+++........+-...|... ..+-...||...+...+.+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 56788888999999999888877643311111122221 1222345777666655554
No 318
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.46 E-value=7.5 Score=40.96 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
.++..++..+...|+.+.+...+++.+...|.+..+|..+...+...|+...|+..|+++-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 55667777777788888888888888888888888888888888888888888877776543
No 319
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.39 E-value=40 Score=37.25 Aligned_cols=135 Identities=13% Similarity=0.033 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC--cHHHHHHHHHHHhccCCCCcHHHHHHH----HHHHHHhcCHHHH
Q 004187 297 SIDAAIKVFQRALKALPDSEMLRYAFAELEESRG--AIAAAKKLYESLLTDSVNTTALAHIQF----IRFLRRTEGVEAA 370 (770)
Q Consensus 297 ~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g--~~e~A~~iye~al~~~p~~~~~~w~~~----~~~~~r~~~~e~A 370 (770)
-.++-+.+.+.+++.+|++-.+|....-++.+.+ ++..-..+-+++++.++. +-..|-.. ..+.+......+=
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~R-Nfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPR-NFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcc-cccchHHHHHHHHHHhcccccchhH
Confidence 3566678888899999999999998888877654 357777888999998887 45566322 1122222223445
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCC---HHHHHH---HHHHHHHhCCCcHHHHHHHHHHHHh
Q 004187 371 RKYFLDARKSPNFTYHVYVAYALMAFCQ-----DKD---PKLAHN---VFEAGLKRFMHEPAYILEYADFLSR 432 (770)
Q Consensus 371 ~~~f~~Al~~~~~~~~~yi~~a~le~~~-----~g~---~~~A~~---ife~alk~~p~~~~~~l~ya~~l~~ 432 (770)
.++..++|..+..++++|.....++-.. .|+ .+.-.+ .-..++-..|++...|..+..++.+
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 6777888888888899998877765422 231 222222 2233334578888899765544433
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.19 E-value=12 Score=28.83 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYA 321 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~ 321 (770)
+..|.+|..+.+.|++++|+...+++++..|++..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 345667777788888888888888888888888765543
No 321
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=78.12 E-value=22 Score=43.96 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcC-CCCCCcchhhhHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Q 004187 242 IAWKRLLTFEKGN-PQRIDTASSNKRIIFTYEQCLMYL------YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA--L 312 (770)
Q Consensus 242 ~lw~~yi~~ek~n-~~~ld~~~~~~r~~~~ye~aL~~~------p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~--~ 312 (770)
..|.+|+.|-..+ +.... ...-+..+.++|+... .+++.+...|.. +.......+++++|...-.. .
T Consensus 35 ~~w~ryi~wv~~~~~~~~~---~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgIg 110 (974)
T KOG1166|consen 35 DKWLRYIEWVLEVYPEGKE---NQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAEDFFSYLENKGIG 110 (974)
T ss_pred hhhHhHhhhhhhccccCCc---hhhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhcccc
Confidence 4899999987643 22111 1223344666666543 334442222221 33445677889999888764 5
Q ss_pred CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcC
Q 004187 313 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG 366 (770)
Q Consensus 313 P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~ 366 (770)
.....++..|+..+++.+.+.+|.++|+..++........+-.++..|..|.+.
T Consensus 111 ~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r 164 (974)
T KOG1166|consen 111 TTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMR 164 (974)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Confidence 677888999999999999999999999999987665344566677777776544
No 322
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.09 E-value=2.7e+02 Score=37.83 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCc---------
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR-FMHE--------- 419 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~-~p~~--------- 419 (770)
....|.+++++.+..|+++.|....-.|.+.. ...+++..|.+++.. |+...|..+++..+.+ +|+.
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~-gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQT-GDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhh-ccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 56899999999999999999999999988866 468999999999996 9999999999999965 4440
Q ss_pred -------HHHHHHHHHHHHhcCCh--hHHHHHHHHHHhCCC
Q 004187 420 -------PAYILEYADFLSRLNDD--RNIRALFERALSSLP 451 (770)
Q Consensus 420 -------~~~~l~ya~~l~~~g~~--~~Ar~lferaL~~~p 451 (770)
..+.+.+..|..+.++. +.....|..+++.+|
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 12345556666666654 567788889888877
No 323
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.89 E-value=1.3e+02 Score=34.10 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHH--HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC------cH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALP-DSEM--LRYAFAELEESRGAIAAAKKLYESLLTDSVNT------TA 351 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P-~s~~--lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~------~~ 351 (770)
.+.+.+.++.+...-+.++.|..-|-.|++.-- .+.. +-..+|..|.+.++.+.-.++.+..-..+.+. ..
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a 445 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEA 445 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHH
Confidence 566778888888888899999999999988532 2322 22356788888887766656655543332221 24
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---hCCCcH-H
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNF------TYHVYVAYALMAFCQDKDPKLAHNVFEAGLK---RFMHEP-A 421 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~------~~~~yi~~a~le~~~~g~~~~A~~ife~alk---~~p~~~-~ 421 (770)
.+++.++-|...++++.+|+....+.++..+. ..-..+-++.+-+.. |+..+++++..-++. +-||.+ .
T Consensus 446 ~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lsl-gn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 446 SILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSL-GNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHh-cchHHHHhccchHHHHHhcCCCchHH
Confidence 57888899999999999999999999886432 111222234444454 899999998877765 456654 4
Q ss_pred HHH
Q 004187 422 YIL 424 (770)
Q Consensus 422 ~~l 424 (770)
+|.
T Consensus 525 Lws 527 (629)
T KOG2300|consen 525 LWS 527 (629)
T ss_pred HHH
Confidence 563
No 324
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.83 E-value=17 Score=39.98 Aligned_cols=129 Identities=11% Similarity=0.107 Sum_probs=94.9
Q ss_pred hhccccCCCCCHHHHHHHHHHhcCC---ChhhHHHHHHHHHHhCCCcHHHHHHH---HHHHHhcCC-HHHHHHHHHHHHh
Q 004187 12 ENITGVADKYNVETAEILANSALHL---PVAQAAPIYEQLLSVFPTAAKFWKQY---VEAYMAVNN-DDATKQLFSRCLL 84 (770)
Q Consensus 12 ~~i~~~~~P~d~~aw~~l~~~~~~~---~i~~Ar~~ye~~l~~fP~~~~~W~~y---i~~e~~~~~-~~~a~~ifeRaL~ 84 (770)
.++. .||+++.+|....-.++.. +++.-..+.+++++.+|.+...|--. ...-.+.++ ..+-.+...+++.
T Consensus 100 ~~L~--~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~ 177 (421)
T KOG0529|consen 100 SALK--VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLIN 177 (421)
T ss_pred HHHH--hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHh
Confidence 4566 8999999999998877754 47888899999999999999888622 122222222 4455677888888
Q ss_pred hcC-ChHHHHHHHHHHHHHhhccCcc----hHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHh
Q 004187 85 ICL-QVPLWRCYIRFIRKVYEKKGTE----GQEETRKAFDFMLSHVGSDISSGPIWLEYITFLK 143 (770)
Q Consensus 85 ~~p-~~~lW~~y~~~~~~~~~~~~~~----~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~ 143 (770)
.++ |...|..-..++...... ... ..+.+++-++..+..+=.||...+.|.-+.=++.
T Consensus 178 ~nfSNYsaWhyRs~lL~~l~~~-~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 178 DNFSNYSAWHYRSLLLSTLHPK-EADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred ccchhhhHHHHHHHHHHHhccc-cccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 876 789998888877754322 122 2678888899999988899999999988544443
No 325
>PF13041 PPR_2: PPR repeat family
Probab=76.92 E-value=9 Score=28.63 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CChHHHHHHH
Q 004187 56 AKFWKQYVEAYMAVNNDDATKQLFSRCLLIC--LQVPLWRCYI 96 (770)
Q Consensus 56 ~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~--p~~~lW~~y~ 96 (770)
.-.|..++..+.+.|++++|.++|+++.+.. |+...+...+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3468899999999999999999999998874 6765554444
No 326
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=76.32 E-value=66 Score=37.45 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=69.9
Q ss_pred hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 004187 364 TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALF 443 (770)
Q Consensus 364 ~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lf 443 (770)
.++.++|....++......+...+.++...+++......+.-..+|+.++++.|.........+..+.. ..++.+++
T Consensus 322 ~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Ll 398 (547)
T PF14929_consen 322 GGRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLL 398 (547)
T ss_pred cccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHH
Confidence 367788888887776666666677777666666543467777888888888888765444333332222 45566666
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHH-cCCH----HHHHHHHHHHHHhcc
Q 004187 444 ERALSSLPPEESIEVWKRFTQFEQM-YGDL----DSTLKVEQRRKEALS 487 (770)
Q Consensus 444 eraL~~~p~~~~~~lw~~~~~fE~~-~Gd~----~~~~k~~~R~~~~~~ 487 (770)
+-..-.+...-+..+|..|+..-.+ .++. +...++++-+.+.+.
T Consensus 399 e~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LD 447 (547)
T PF14929_consen 399 EMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLD 447 (547)
T ss_pred HHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhccc
Confidence 6321111111235778777775554 3443 344444444444444
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.66 E-value=1.6e+02 Score=33.60 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C--Cc---HHHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 267 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL-P--DS---EMLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 267 ~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~-P--~s---~~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
...+.++.++.+-++...--.+|..|++ ++.+.+...|.+|+... | ++ .++|-.+..+ --.+.|....+..
T Consensus 117 l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~ 193 (711)
T COG1747 117 LYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQK 193 (711)
T ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHH
Confidence 3445555555555555555566776666 67778888888888753 4 22 3455443332 1234444444444
Q ss_pred HHhccCCCCcHHHHHHHH-HHHHHhcCHHHHHHHHHHHHcCCCC
Q 004187 341 SLLTDSVNTTALAHIQFI-RFLRRTEGVEAARKYFLDARKSPNF 383 (770)
Q Consensus 341 ~al~~~p~~~~~~w~~~~-~~~~r~~~~e~A~~~f~~Al~~~~~ 383 (770)
+.-+........+.++.. ..+...+++++|+.+++..++.+..
T Consensus 194 kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k 237 (711)
T COG1747 194 KIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEK 237 (711)
T ss_pred HHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcch
Confidence 433322222334444444 4555678888899988888886654
No 328
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=73.99 E-value=4.9 Score=40.67 Aligned_cols=53 Identities=21% Similarity=0.417 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE 316 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~ 316 (770)
.+-+..+|.+++...|....-|+.++.+.++.|+.+.|.+.|++.++..|.+.
T Consensus 11 ~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 11 AEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 45567799999999999999999999999999999999999999999999774
No 329
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=73.58 E-value=1.3e+02 Score=31.83 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP 313 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P 313 (770)
...++..+.+.+-...|+.+.++.....++...++.+++.+++.+++...+
T Consensus 102 ~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 102 SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 344566666666667788888888888888888888888999999988765
No 330
>PRK10941 hypothetical protein; Provisional
Probab=73.51 E-value=22 Score=37.39 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=51.9
Q ss_pred cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 004187 34 LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ 88 (770)
Q Consensus 34 ~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~ 88 (770)
+.+++++|..+-|+++...|.+..-|...+-.+.+.|.+..|..=++..+..||.
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 4468999999999999999999999999999999999999999999999999984
No 331
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.55 E-value=1e+02 Score=29.78 Aligned_cols=56 Identities=11% Similarity=-0.091 Sum_probs=22.1
Q ss_pred hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 364 TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 364 ~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
.++.+.+..++.-.....|....+-+--+.+.... |++.+|+.+|+.....-|..+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r-~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVR-GDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHhccCCCCh
Confidence 33444444444444333333333322223332232 444444444444444444433
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.91 E-value=65 Score=37.29 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=86.5
Q ss_pred HHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc
Q 004187 272 EQCLMYLYHY-PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT 350 (770)
Q Consensus 272 e~aL~~~p~~-~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~ 350 (770)
+.+-...|.- .+.....+.|++++|-.++ |+..+++... .| .+..+.|+++.|.++..++ + .
T Consensus 603 ~~a~~vLp~I~k~~rt~va~Fle~~g~~e~-------AL~~s~D~d~-rF---elal~lgrl~iA~~la~e~---~---s 665 (794)
T KOG0276|consen 603 EVADGVLPTIPKEIRTKVAHFLESQGMKEQ-------ALELSTDPDQ-RF---ELALKLGRLDIAFDLAVEA---N---S 665 (794)
T ss_pred cccccccccCchhhhhhHHhHhhhccchHh-------hhhcCCChhh-hh---hhhhhcCcHHHHHHHHHhh---c---c
Confidence 3333334433 3567788888888886555 4455554432 11 3345678888777765442 2 3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004187 351 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFL 430 (770)
Q Consensus 351 ~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l 430 (770)
..=|-++++.....+++..|.++|.+|..... + .+++...|+.+--.++-..+-+.-.++..+. .+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~--------L-lLl~t~~g~~~~l~~la~~~~~~g~~N~AF~-----~~ 731 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDLGS--------L-LLLYTSSGNAEGLAVLASLAKKQGKNNLAFL-----AY 731 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcchhh--------h-hhhhhhcCChhHHHHHHHHHHhhcccchHHH-----HH
Confidence 46799999999999999999999999876332 1 1223345766644444443333333343332 23
Q ss_pred HhcCChhHHHHHHHHH
Q 004187 431 SRLNDDRNIRALFERA 446 (770)
Q Consensus 431 ~~~g~~~~Ar~lfera 446 (770)
...|+++++.+++.+.
T Consensus 732 ~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 732 FLSGDYEECLELLIST 747 (794)
T ss_pred HHcCCHHHHHHHHHhc
Confidence 4578888887777654
No 333
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.75 E-value=2.3e+02 Score=33.66 Aligned_cols=430 Identities=15% Similarity=0.124 Sum_probs=213.0
Q ss_pred hhhHHHHHHHHHHhCCCc----HHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHhhccCcch
Q 004187 38 VAQAAPIYEQLLSVFPTA----AKFWKQYVEAYM-AVNNDDATKQLFSRCLLICL--QVPLWRCYIRFIRKVYEKKGTEG 110 (770)
Q Consensus 38 i~~Ar~~ye~~l~~fP~~----~~~W~~yi~~e~-~~~~~~~a~~ifeRaL~~~p--~~~lW~~y~~~~~~~~~~~~~~~ 110 (770)
|.-|..+++.++..++-. ..+...|+..+. ...|++.|+..++|++..+- +..=.+..+.+..-.-- ...+
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~--~~~~ 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIY--FKTN 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH--HhcC
Confidence 455788888888665543 456778888777 56899999999999998873 33222333333221100 0011
Q ss_pred HHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHHHH--
Q 004187 111 QEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTH-HVEQLWKDYENFEN-- 187 (770)
Q Consensus 111 ~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~-~~~~l~~~y~~fe~-- 187 (770)
...+.+..+++++.... .....|...++|++-.. ....++...|...++.....+.. ....++..+.-.+-
T Consensus 115 ~~~a~~~l~~~I~~~~~--~~~~~w~~~frll~~~l----~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 115 PKAALKNLDKAIEDSET--YGHSAWYYAFRLLKIQL----ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred HHHHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHH----HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 23377888877776543 23357888888874211 11113455566666666554310 00001100000000
Q ss_pred ------------HhhHhH--HHH----------------HH-----HHHhHHHHHHHHHHHHHHHHHHHhhhhc-c-CCC
Q 004187 188 ------------SVSRQL--AKG----------------LL-----SEYQSKYTSARAVYRERKKYCEEIDWNM-L-AVP 230 (770)
Q Consensus 188 ------------~~~~~l--a~~----------------ll-----~e~~~~y~~A~~v~k~~~~~~~~L~~~~-~-~v~ 230 (770)
.++..+ +.+ ++ .-..+++..+....++.+.+.+...... . .+.
T Consensus 189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~ 268 (608)
T PF10345_consen 189 HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWD 268 (608)
T ss_pred HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence 000000 000 00 0123455566666777666666654432 0 000
Q ss_pred CCC------------------Ch--hhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCC----------
Q 004187 231 PTG------------------SY--KEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYH---------- 280 (770)
Q Consensus 231 p~~------------------~~--~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~---------- 280 (770)
+.+ .. .....+-+-...+..-..-. ....+++...++++++.--.
T Consensus 269 ~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~-----~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~ 343 (608)
T PF10345_consen 269 EDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLY-----KGSMDKSEKFLEKALKQIEKLKIKSPSAPS 343 (608)
T ss_pred CCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhh-----ccCchHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 100 00 01111111111111111000 01112455566666642110
Q ss_pred -------CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhC---CC------cHHHHHHHHHHHHHhCcHHHH
Q 004187 281 -------YPDIWYDYATWNA---------KSGSIDAAIKVFQRALKAL---PD------SEMLRYAFAELEESRGAIAAA 335 (770)
Q Consensus 281 -------~~~~w~~~a~~l~---------~~g~~e~A~~v~erAi~~~---P~------s~~lw~~~a~~~~~~g~~e~A 335 (770)
....|+....++. ..+++..|....+.+...+ |. ...+++..|.++...|+.+.|
T Consensus 344 ~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A 423 (608)
T PF10345_consen 344 ESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAA 423 (608)
T ss_pred cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHH
Confidence 1134544444443 2578888888888777653 32 366788889999999999999
Q ss_pred HHHHH--------HHhccCCCCcHHHHH----HHHHHHHHhcC--HHH--HHHHHHHHHcCCCCCH----HHHHHHHHHH
Q 004187 336 KKLYE--------SLLTDSVNTTALAHI----QFIRFLRRTEG--VEA--ARKYFLDARKSPNFTY----HVYVAYALMA 395 (770)
Q Consensus 336 ~~iye--------~al~~~p~~~~~~w~----~~~~~~~r~~~--~e~--A~~~f~~Al~~~~~~~----~~yi~~a~le 395 (770)
...|. .+....+. .++|+ ++.-.+...+. ... +..++++.-....... ..+......-
T Consensus 424 ~~~y~~~~~~~~~~~~~~~~~--~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~ 501 (608)
T PF10345_consen 424 LYQYQKPRFLLCEAANRKSKF--RELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLAT 501 (608)
T ss_pred HHHHhhhHHhhhhhhccCCcc--hHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHH
Confidence 99998 33333333 34443 22222332222 222 6667766544221111 1111111111
Q ss_pred Hh--cCCCHHHHHHHHHHHHHhC-C---C--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--chhHHHHHHHHHH-
Q 004187 396 FC--QDKDPKLAHNVFEAGLKRF-M---H--EPAYILEYADFLSRLNDDRNIRALFERALSSLP--PEESIEVWKRFTQ- 464 (770)
Q Consensus 396 ~~--~~g~~~~A~~ife~alk~~-p---~--~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p--~~~~~~lw~~~~~- 464 (770)
+. ..-...+++..+..+++.. . + -..+.+.|+.+-.-.|+..+......++..... ++....+|.....
T Consensus 502 ~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~ 581 (608)
T PF10345_consen 502 YNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASG 581 (608)
T ss_pred HhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 11 1223457888888777765 1 1 124455665555557888777777777665322 2346788933322
Q ss_pred --H--HHHcCCHHHHHHHHHHH
Q 004187 465 --F--EQMYGDLDSTLKVEQRR 482 (770)
Q Consensus 465 --f--E~~~Gd~~~~~k~~~R~ 482 (770)
. ....|+.+++..+....
T Consensus 582 ~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 582 MLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHcCcHHHHHHHHHHH
Confidence 2 23568888777665443
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=70.62 E-value=9.7 Score=26.70 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKA 311 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~ 311 (770)
++..+|.++...|++++|..++++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4556666666677777777777666653
No 335
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.41 E-value=48 Score=30.96 Aligned_cols=69 Identities=14% Similarity=0.047 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHH-hCCCcH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004187 384 TYHVYVAYALMAF--CQDKDPKLAHNVFEAGLK-RFMHEP-AYILEYADFLSRLNDDRNIRALFERALSSLPP 452 (770)
Q Consensus 384 ~~~~yi~~a~le~--~~~g~~~~A~~ife~alk-~~p~~~-~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~ 452 (770)
+.+..+++|..+. ....+..+...+++..++ ..|... +..+..+--+.++++++.++.+.+..|+.-|.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 3444455444443 333567788899999997 455533 44444455567888999999999998887763
No 336
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=70.05 E-value=1.8e+02 Score=32.22 Aligned_cols=194 Identities=14% Similarity=0.094 Sum_probs=108.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CC--------cHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc-----CCCCcHH
Q 004187 287 DYATWNAKSGSIDAAIKVFQRALKAL-PD--------SEMLRYAFAELEESRGAIAAAKKLYESLLTD-----SVNTTAL 352 (770)
Q Consensus 287 ~~a~~l~~~g~~e~A~~v~erAi~~~-P~--------s~~lw~~~a~~~~~~g~~e~A~~iye~al~~-----~p~~~~~ 352 (770)
....++..+.++.+|.++-+..+... -. ...+|+-+...++..|+....+..+...+.. +....+-
T Consensus 131 Lv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qav 210 (493)
T KOG2581|consen 131 LVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAV 210 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHH
Confidence 33445555667777777666655431 11 2456888888888889888888877666542 2222223
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHH-----
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA----YALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI----- 423 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~----~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~----- 423 (770)
+...+.+.+.-++-++.|.++..+..--....-.-|.. .+.+- ....+++.|.+.|-.|+.+-|+...+-
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIk-aiqldYssA~~~~~qa~rkapq~~alGf~q~v 289 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIK-AIQLDYSSALEYFLQALRKAPQHAALGFRQQV 289 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHH-HhhcchhHHHHHHHHHHHhCcchhhhhHHHHH
Confidence 33344555666777888888777665211111111211 12221 124789999999999999999754321
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 424 -LEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 424 -l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
...+-...-+|++.+ |.+|.+..- .++...|..+...- +.||+.....+..+....|.
T Consensus 290 ~k~~ivv~ll~geiPe-rs~F~Qp~~----~ksL~~Yf~Lt~AV-r~gdlkkF~~~leq~k~~f~ 348 (493)
T KOG2581|consen 290 NKLMIVVELLLGEIPE-RSVFRQPGM----RKSLRPYFKLTQAV-RLGDLKKFNETLEQFKDKFQ 348 (493)
T ss_pred HHHHHHHHHHcCCCcc-hhhhcCccH----HHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHh
Confidence 122222233455443 233332110 12223333222221 56999888888888888776
No 337
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.93 E-value=15 Score=38.57 Aligned_cols=59 Identities=27% Similarity=0.205 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
+....+.++...|.+.+|.+..+|++..+|-+...|..+...+...|+--.|.+.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33456778888899999999999999999999999998888888888866666666554
No 338
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.35 E-value=1.1e+02 Score=29.46 Aligned_cols=55 Identities=9% Similarity=-0.077 Sum_probs=27.9
Q ss_pred HhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC
Q 004187 328 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF 383 (770)
Q Consensus 328 ~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~ 383 (770)
..++.+++..++.-+--..|. ...+-+.-+....+.+++.+|+.+|+.+....++
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 344555555555554444444 3344444444445555555555555555554443
No 339
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=68.73 E-value=44 Score=30.02 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=66.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHH-HHHhccCCCCcHHHHHHHHHHHHHhcCH
Q 004187 289 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLY-ESLLTDSVNTTALAHIQFIRFLRRTEGV 367 (770)
Q Consensus 289 a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iy-e~al~~~p~~~~~~w~~~~~~~~r~~~~ 367 (770)
|.-+...|+.-+|+++.+..+...+++...|+ ++..+|. +| +.+-.... +++-+.|.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~----lh~~QG~------if~~lA~~ten---~d~k~~yL--------- 60 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWL----LHRLQGT------IFYKLAKKTEN---PDVKFRYL--------- 60 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHH----HHHHHhH------HHHHHHHhccC---chHHHHHH---------
Confidence 45567889999999999999999998887763 2334443 33 22322221 22322222
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 368 EAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 368 e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
..+.+.|.++....+......+.+|.-+-. ...++++..-.+++|..
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s-~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGS-VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhcc
Confidence 246777888888777667777777664322 24677777777777764
No 340
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.33 E-value=1.6e+02 Score=30.84 Aligned_cols=186 Identities=12% Similarity=0.087 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHhCcHH
Q 004187 264 NKRIIFTYEQCLMYLYHYP----DIWYDYATWNAKSGSIDAAIKVFQRALKALP------DSEMLRYAFAELEESRGAIA 333 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~----~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P------~s~~lw~~~a~~~~~~g~~e 333 (770)
.+.++..|++.+...+.-. .+.-+...+..+.+++++....|.+.+.... -+..--....++-....+.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 4566777888887766533 4556666777778888887777776654321 11111122223322334455
Q ss_pred HHHHHHHHHhccCCC-CcHHHHH----HHHHHHHHhcCHHHHHHHHHHHHcCC------------CCCHHHHHHHHHHHH
Q 004187 334 AAKKLYESLLTDSVN-TTALAHI----QFIRFLRRTEGVEAARKYFLDARKSP------------NFTYHVYVAYALMAF 396 (770)
Q Consensus 334 ~A~~iye~al~~~p~-~~~~~w~----~~~~~~~r~~~~e~A~~~f~~Al~~~------------~~~~~~yi~~a~le~ 396 (770)
-....|+..|..-.+ .+..+|+ .+++++...+.+....+++++.-+++ ..-.++|.--.+|..
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT 202 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYT 202 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhh
Confidence 555666655532111 1233553 55666666666666666666654321 112444544445544
Q ss_pred hcCCCHHHHHHHHHHHHHhC---CCcH--HHHH-HHHHHHHhcCChhHHHHHHHHHHhCC
Q 004187 397 CQDKDPKLAHNVFEAGLKRF---MHEP--AYIL-EYADFLSRLNDDRNIRALFERALSSL 450 (770)
Q Consensus 397 ~~~g~~~~A~~ife~alk~~---p~~~--~~~l-~ya~~l~~~g~~~~Ar~lferaL~~~ 450 (770)
. +++-.+-..+|+.++..- |+-. .+.. .=+.++.+.|++++|..-|=.|.+..
T Consensus 203 ~-qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 203 E-QKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred h-hcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 4 477778888999888753 3311 1111 22356677788888877666677654
No 341
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=67.77 E-value=1e+02 Score=38.46 Aligned_cols=118 Identities=17% Similarity=0.372 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhc----CC-HHHHHHHHHHHHhhcCC-------hHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHh
Q 004187 57 KFWKQYVEAYMAV----NN-DDATKQLFSRCLLICLQ-------VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSH 124 (770)
Q Consensus 57 ~~W~~yi~~e~~~----~~-~~~a~~ifeRaL~~~p~-------~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ 124 (770)
..|..|+.+.... ++ ....+.+.+||+....+ ..+.+.|+.++.. +....++++|..+...
T Consensus 35 ~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~-------e~~~d~~d~f~~m~~k 107 (974)
T KOG1166|consen 35 DKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLELR-------EELQDAEDFFSYLENK 107 (974)
T ss_pred hhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHHH-------HHHhhHHHHHHHHHhc
Confidence 4577777776532 33 66788889999887643 2333333332221 1245677888766553
Q ss_pred cCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhhH
Q 004187 125 VGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSR 191 (770)
Q Consensus 125 ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y~~fe~~~~~ 191 (770)
|.-......+..|..+++ ..+.+..|..+|+.+++.--...+.+-..|..|...+.+
T Consensus 108 -gIg~~lalfYe~~a~~lE---------~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r 164 (974)
T KOG1166|consen 108 -GIGTTLALFYEAYAKHLE---------RKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMR 164 (974)
T ss_pred -cccchhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Confidence 222334456666666643 467899999999999987333345666677777665443
No 342
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=67.19 E-value=41 Score=34.18 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC--CC----cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 282 PDIWYDYATWNAKSGSI-------DAAIKVFQRALKAL--PD----SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~-------e~A~~v~erAi~~~--P~----s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
..+++.+|-++...|+. ..|.+.|++++... |. ...+.+..|.+..+.|++++|...|.+++.....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 35677788777777773 45777777777653 32 2457778899999999999999999999987665
No 343
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=66.58 E-value=8.7 Score=24.97 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004187 58 FWKQYVEAYMAVNNDDATKQLFSRCLLI 85 (770)
Q Consensus 58 ~W~~yi~~e~~~~~~~~a~~ifeRaL~~ 85 (770)
.|..+++.+.+.|++++|..+|+++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4788899999999999999999988653
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=66.57 E-value=8.2 Score=24.70 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQ 306 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~e 306 (770)
+.+.++..+...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555666666666666665554
No 345
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=66.36 E-value=1.1e+02 Score=28.55 Aligned_cols=117 Identities=9% Similarity=0.130 Sum_probs=65.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-----------HHHh---------CcHHHHHHHHHHHhccCCCCcH
Q 004187 292 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAEL-----------EESR---------GAIAAAKKLYESLLTDSVNTTA 351 (770)
Q Consensus 292 l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~-----------~~~~---------g~~e~A~~iye~al~~~p~~~~ 351 (770)
+...|..++..++..+.+...+-+..-|+.--.+ ++.- |+..+...+|-+. +. .
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~---n~---~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR---NK---L 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT---T-----
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh---cc---h
Confidence 4456888999999999999888777767632111 1111 1122222222111 00 1
Q ss_pred HHHHHHH-HHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 352 LAHIQFI-RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 352 ~~w~~~~-~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
.-|+.++ .....++.-+...+++....+.....+...+..|..+-+. |+..++-+++.++-++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~kl-g~~r~~~ell~~ACek 149 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKL-GNTREANELLKEACEK 149 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHh-cchhhHHHHHHHHHHh
Confidence 1222222 4556678888888888888876666788888888876665 9999998888877765
No 346
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=65.61 E-value=13 Score=27.10 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=14.1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhCcH
Q 004187 305 FQRALKALPDSEMLRYAFAELEESRGAI 332 (770)
Q Consensus 305 ~erAi~~~P~s~~lw~~~a~~~~~~g~~ 332 (770)
|.+||...|++...+..||+++...|+.
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~gdp 32 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHGDP 32 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCH
Confidence 4445555555555555555555555443
No 347
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.28 E-value=94 Score=35.92 Aligned_cols=113 Identities=12% Similarity=-0.049 Sum_probs=68.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE--MLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 271 ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~--~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
.-.+++..+.+-.+....+-+..-.|+.-+|..++.+|+-..|... ...+.+|.++.+.|-..+|.-|+..|+..-+.
T Consensus 202 ~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 3344445555544444444344446888888888888888766542 34567788888888877888888777776554
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC
Q 004187 349 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT 384 (770)
Q Consensus 349 ~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~ 384 (770)
.+.-++.+++.+...+.+......|..+.+..+.+
T Consensus 282 -~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 282 -FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred -ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 22224444444444455555555555666555543
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.06 E-value=1.2e+02 Score=34.61 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
..+.||... .+++..+++| .+.|+++.|.++.+ .-++...|-.+|+....+|+++-|.++|+++-.
T Consensus 310 ~~e~AL~~~-~D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----- 375 (443)
T PF04053_consen 310 YPELALQFV-TDPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD----- 375 (443)
T ss_dssp -HHHHHHHS-S-HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------
T ss_pred CHHHHHhhc-CChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----
Confidence 456677644 4567777665 57888888776553 235778999999999999999999999987432
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFE 410 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife 410 (770)
|-.+.-++...|+.+..+++-+.|..... ..+-...+.+ .|+.++..+++.
T Consensus 376 ----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--~n~af~~~~~----lgd~~~cv~lL~ 426 (443)
T PF04053_consen 376 ----FSGLLLLYSSTGDREKLSKLAKIAEERGD--INIAFQAALL----LGDVEECVDLLI 426 (443)
T ss_dssp ----HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHHHHH----HT-HHHHHHHHH
T ss_pred ----ccccHHHHHHhCCHHHHHHHHHHHHHccC--HHHHHHHHHH----cCCHHHHHHHHH
Confidence 33344455667888888999888887654 2332222222 388887776654
No 349
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.60 E-value=1.5e+02 Score=29.14 Aligned_cols=122 Identities=20% Similarity=0.144 Sum_probs=70.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHHhcC
Q 004187 292 NAKSGSIDAAIKVFQRALKALPDS--EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT---TALAHIQFIRFLRRTEG 366 (770)
Q Consensus 292 l~~~g~~e~A~~v~erAi~~~P~s--~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~---~~~~w~~~~~~~~r~~~ 366 (770)
+.+.+..++|...|...-+..-.+ ....+..+.+..+.|+...|...|..+-+..+.. ...+.+.-+-++..+|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345566777777777666554433 3345566777777888888888887766554431 11233344445556677
Q ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004187 367 VEAARKYFLDARKSPN-FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 367 ~e~A~~~f~~Al~~~~-~~~~~yi~~a~le~~~~g~~~~A~~ife~alk 414 (770)
++......+-.-...+ .....--.++...|+. |++..|++.|+....
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~ka-gd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA-GDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc-cchHHHHHHHHHHHc
Confidence 7766555554433322 2222233344444554 788888887776665
No 350
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=64.54 E-value=49 Score=41.64 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHHHHHhCcHHHHHH
Q 004187 312 LPDSEMLRYAFAELEESRGAIAAAKK 337 (770)
Q Consensus 312 ~P~s~~lw~~~a~~~~~~g~~e~A~~ 337 (770)
.|....-+..++.++.+.++.++|..
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~ 994 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIA 994 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHH
Confidence 44455555555555555555555444
No 351
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=63.74 E-value=23 Score=24.85 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCC
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQ--RALKALP 313 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~e--rAi~~~P 313 (770)
+.|+.+|-.+...|++++|+++|+ -+....+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 456666666666666666666633 4444433
No 352
>PF12854 PPR_1: PPR repeat
Probab=63.55 E-value=12 Score=25.67 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004187 55 AAKFWKQYVEAYMAVNNDDATKQLFSRC 82 (770)
Q Consensus 55 ~~~~W~~yi~~e~~~~~~~~a~~ifeRa 82 (770)
+.-.|..+|..+.+.|++++|.++|+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3446888888888888888888888875
No 353
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.23 E-value=2.8e+02 Score=31.92 Aligned_cols=235 Identities=14% Similarity=0.083 Sum_probs=124.3
Q ss_pred HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HH
Q 004187 243 AWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE----ML 318 (770)
Q Consensus 243 lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~----~l 318 (770)
.|...+.+..+.|. .| .+.............|.++-..+.++..+...|+.+.|+..++.++. +.-. ..
T Consensus 233 ~y~~~~~~~~~~p~-~d----~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~ 305 (546)
T KOG3783|consen 233 CYYQFISFVLGTPN-PD----GEECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLM 305 (546)
T ss_pred HHHHHHHHHcCCCC-cc----HHHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHH
Confidence 45555555554431 11 13333344555566788888888999999999998889999998887 2211 12
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHH-------HHHH---hcCHHHHHHHHHHHH-------cCC
Q 004187 319 RYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIR-------FLRR---TEGVEAARKYFLDAR-------KSP 381 (770)
Q Consensus 319 w~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~-------~~~r---~~~~e~A~~~f~~Al-------~~~ 381 (770)
.+..|-+..-..++.+|-..+..+.....- +.+.+.|.. .... .++.+.|..+++... +..
T Consensus 306 ~fE~aw~~v~~~~~~~aad~~~~L~desdW--S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~ 383 (546)
T KOG3783|consen 306 VFERAWLSVGQHQYSRAADSFDLLRDESDW--SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNL 383 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhh--hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccC
Confidence 234444445556777888888777776553 344443332 1111 224444433333321 111
Q ss_pred CC----------------------CHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh----CCCcHH-HHHHHHHHHHhc
Q 004187 382 NF----------------------TYHVYVAYALMAFCQ-DKDPKLAHNVFEAGLKR----FMHEPA-YILEYADFLSRL 433 (770)
Q Consensus 382 ~~----------------------~~~~yi~~a~le~~~-~g~~~~A~~ife~alk~----~p~~~~-~~l~ya~~l~~~ 433 (770)
|. ..+-|+.++++---. ....++.. -++..+.. ..|+.- ..+-.+-.+.++
T Consensus 384 P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~L 462 (546)
T KOG3783|consen 384 PLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNL 462 (546)
T ss_pred chhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHc
Confidence 10 011123333321111 01222222 12222221 222222 234556788889
Q ss_pred CChhHHHHHHHHHHhCCC--chh---HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcc
Q 004187 434 NDDRNIRALFERALSSLP--PEE---SIEVWKRFTQFEQ-MYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 434 g~~~~Ar~lferaL~~~p--~~~---~~~lw~~~~~fE~-~~Gd~~~~~k~~~R~~~~~~ 487 (770)
|+...|..+|..+++... .++ .+-..+..+.+.. ..|.+..+.+.+.++.+...
T Consensus 463 g~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 463 GDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 999999999999995311 011 1223334444444 44559999999999998874
No 354
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=62.27 E-value=2.1e+02 Score=30.80 Aligned_cols=116 Identities=17% Similarity=0.145 Sum_probs=67.1
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 004187 334 AAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 413 (770)
Q Consensus 334 ~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~al 413 (770)
+-.+.-..+|++++. .+.+++.++. .....+.+|.++|++|++.....+. ..-++... + ..++...
T Consensus 202 ~RI~~A~~ALeIN~e-CA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~~yr---~sqq~qh~--~------~~~da~~ 267 (556)
T KOG3807|consen 202 ARIKAAYQALEINNE-CATAYVLLAE--EEATTIVDAERLFKQALKAGETIYR---QSQQCQHQ--S------PQHEAQL 267 (556)
T ss_pred HHHHHHHHHHhcCch-hhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHHHHh---hHHHHhhh--c------cchhhhh
Confidence 333444567888877 6777777664 3356688999999999985443222 11111111 1 1223333
Q ss_pred HhCCCcHHHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHH
Q 004187 414 KRFMHEPAYI-LEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFT 463 (770)
Q Consensus 414 k~~p~~~~~~-l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~ 463 (770)
+.+-+...+. ...+.+-.++|+..+|...|....+.+|--....+...++
T Consensus 268 rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLi 318 (556)
T KOG3807|consen 268 RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLL 318 (556)
T ss_pred hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 3333322222 3556667788999999999998888777333333333333
No 355
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=61.86 E-value=14 Score=25.81 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 004187 318 LRYAFAELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 318 lw~~~a~~~~~~g~~e~A~~iye~al~~ 345 (770)
.+..+|.++...|++++|..++++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3455666677777777777777766653
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.74 E-value=1.3e+02 Score=34.01 Aligned_cols=121 Identities=11% Similarity=-0.025 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 004187 268 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP-DSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 346 (770)
Q Consensus 268 ~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P-~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~ 346 (770)
..-...+|...|..|+.-...+.+....|.++.+.+.+.-+-...- .+..+...+ .-...+|..+.|...-+-+|...
T Consensus 309 s~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~-r~~~~l~r~~~a~s~a~~~l~~e 387 (831)
T PRK15180 309 SQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRL-RSLHGLARWREALSTAEMMLSNE 387 (831)
T ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHH-HhhhchhhHHHHHHHHHHHhccc
Confidence 3345667788899999999999999999999998887766655433 344443333 33345677788888777777644
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHH
Q 004187 347 VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 390 (770)
Q Consensus 347 p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~ 390 (770)
-. ..++.---+......+-++++....++.+..++..-..|++
T Consensus 388 ie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 388 IE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred cC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 33 23332222233344566777888888877665544444444
No 357
>PF13041 PPR_2: PPR repeat family
Probab=61.65 E-value=31 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcC
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKS 380 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~ 380 (770)
-.|..++..+.+.|++++|.++|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34555555555556666666666555543
No 358
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=60.72 E-value=1.4e+02 Score=27.51 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=59.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHH
Q 004187 293 AKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK 372 (770)
Q Consensus 293 ~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~ 372 (770)
...+........++..+..++.+..++..++.++.+... .+..+.++. ....- +. -..++.+.+.+-++++.-
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~y-d~---~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDN--KSNHY-DI---EKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccC-CH---HHHHHHHHHcCcHHHHHH
Confidence 344566777778888887777777777777777765432 333344432 11110 00 112334444555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 373 YFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 431 (770)
Q Consensus 373 ~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~ 431 (770)
++.+.-. |.....+.....++.+.|.+.+.+ ..++++|...+.+..
T Consensus 91 l~~k~~~--------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 91 LYKKDGN--------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHhhcC--------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 5555311 111111111112566666665543 245667776666554
No 359
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.53 E-value=1.4e+02 Score=33.63 Aligned_cols=129 Identities=13% Similarity=-0.123 Sum_probs=82.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 004187 294 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKY 373 (770)
Q Consensus 294 ~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~ 373 (770)
..|++-.|-.-+..++...|..+.+-...+.+.+.+|+|+.+......+=+.... ....---+++-....++.+.|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s-~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT-TDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC-CchHHHHHHHhhhchhhHHHHHHH
Confidence 3577777777777888999999888888899999999999888776433222211 112223334444556778888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 004187 374 FLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424 (770)
Q Consensus 374 f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l 424 (770)
-+-.+.+.-.+.++.--.|.-... .|-++++.-.+++.+...|....-|.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~-l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADA-LQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHhccccCChhheeeecccHHH-HhHHHHHHHHHHHHhccCChhcccce
Confidence 777776554444443222221122 36678888888888887765444443
No 360
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=60.00 E-value=22 Score=25.91 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHH
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAA 301 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A 301 (770)
.|.+++...|.+...++.||.|+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 57889999999999999999999999998654
No 361
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=58.45 E-value=77 Score=36.17 Aligned_cols=84 Identities=21% Similarity=0.141 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---CcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004187 298 IDAAIKVFQRALKALPDSEMLRYAFAELEESR---GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF 374 (770)
Q Consensus 298 ~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~---g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f 374 (770)
...++..|.+++...|....++..+|.++.++ |+.-.|..--..++..++. ...+|+.+++++...+.+.+|++.-
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s-~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS-IQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH-HHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 45688899999999999999888888877765 3333333333445666665 4567777777777766666666655
Q ss_pred HHHHcCCC
Q 004187 375 LDARKSPN 382 (770)
Q Consensus 375 ~~Al~~~~ 382 (770)
..+....|
T Consensus 469 ~alq~~~P 476 (758)
T KOG1310|consen 469 WALQMSFP 476 (758)
T ss_pred HHHhhcCc
Confidence 55544444
No 362
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=58.36 E-value=71 Score=34.64 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 297 SIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 297 ~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
-.++.+.++...|+..|+- ...|+-+|.++...|.++.+..+|++|+.....
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 3456777777777777754 456777788887778877788888877765543
No 363
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.74 E-value=60 Score=30.61 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 004187 242 IAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYA 321 (770)
Q Consensus 242 ~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~ 321 (770)
.+|..|+-|-.+||-.+.+....+ .-++.+... --.+.-+..|+-....|++.-|..+...++...|++......
T Consensus 35 aIy~~Y~GWfDgnP~~L~pl~p~~----~A~~~v~l~-GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l 109 (141)
T PF14863_consen 35 AIYQGYLGWFDGNPANLNPLPPEE----EAKRYVELA-GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQL 109 (141)
T ss_dssp HHHHHHC-S--S-GGGTS---HHH----HHHHHHHHT-TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHcCCccCCCccccCCCChHH----HHHHHHHHc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 578888888888876664322111 123333332 455667778888889999999999999999999999999988
Q ss_pred HHHHHHHhCc
Q 004187 322 FAELEESRGA 331 (770)
Q Consensus 322 ~a~~~~~~g~ 331 (770)
.++.++++|.
T Consensus 110 ~A~al~~lg~ 119 (141)
T PF14863_consen 110 KADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877653
No 364
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.31 E-value=1.6e+02 Score=29.93 Aligned_cols=59 Identities=20% Similarity=0.047 Sum_probs=50.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 290 TWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 290 ~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
.-+.+.+++.+|+...+.-++..|.+......|-.++.-.|++++|...++-+-...|.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 34566778999999999999999999888888888888999999999998888877776
No 365
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=56.76 E-value=2.6e+02 Score=29.35 Aligned_cols=145 Identities=12% Similarity=-0.045 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hCcHHHHHHHHHHHhccCCCCcHHHH
Q 004187 283 DIWYDYATWNAKS----GSIDAAIKVFQRALKALPDSEMLRYAFAELEES----RGAIAAAKKLYESLLTDSVNTTALAH 354 (770)
Q Consensus 283 ~~w~~~a~~l~~~----g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~----~g~~e~A~~iye~al~~~p~~~~~~w 354 (770)
..-..++..+... .+..+|.+.|..+. ...+....+.++.++.. ..+..+|...|+++.......-..+-
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 4555555555543 35778888888443 44566667778888776 34788999999999887654111223
Q ss_pred HHHHHHHHHh-------cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 004187 355 IQFIRFLRRT-------EGVEAARKYFLDARKSPNFTYHVYVAYALMAFC---QDKDPKLAHNVFEAGLKRFMHEPAYIL 424 (770)
Q Consensus 355 ~~~~~~~~r~-------~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~---~~g~~~~A~~ife~alk~~p~~~~~~l 424 (770)
..++.++..- .+.+.|+..|.++-.... ......++.++.. ...|..+|...|.++-+.-. ...++
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~--~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~ 227 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGN--PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACY 227 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcC--HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHH
Confidence 4444433322 123478999999887763 4566666666443 23488999999999998765 44444
Q ss_pred HHHHHHHhcC
Q 004187 425 EYADFLSRLN 434 (770)
Q Consensus 425 ~ya~~l~~~g 434 (770)
... ++...|
T Consensus 228 ~~~-~~~~~g 236 (292)
T COG0790 228 NLG-LMYLNG 236 (292)
T ss_pred HHH-HHHhcC
Confidence 444 333333
No 366
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=56.19 E-value=64 Score=36.74 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKS---GSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~---g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
..++..|-+++...|+...++..+|.++.+. |+.-.|+.-...|+..+|-....|+.+++++...+.+.+|.+....
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 3446789999999999999999999999875 5677788888999999999999999999999999999999988877
Q ss_pred HhccCCC
Q 004187 342 LLTDSVN 348 (770)
Q Consensus 342 al~~~p~ 348 (770)
+....|.
T Consensus 471 lq~~~Pt 477 (758)
T KOG1310|consen 471 LQMSFPT 477 (758)
T ss_pred HhhcCch
Confidence 6666663
No 367
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=55.71 E-value=2.7e+02 Score=29.22 Aligned_cols=122 Identities=12% Similarity=0.065 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHh-----C--c
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAK----SGSIDAAIKVFQRALKALPDS-EMLRYAFAELEESR-----G--A 331 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~----~g~~e~A~~v~erAi~~~P~s-~~lw~~~a~~~~~~-----g--~ 331 (770)
...+...|+ ......++..-+.++.++.. ..+..+|...|++|....-.. ....+.++.++..- - +
T Consensus 93 ~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 93 KTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 345566666 33455677788889988876 348899999999999974433 34455566665543 1 2
Q ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004187 332 IAAAKKLYESLLTDSVNTTALAHIQFIRFLRR----TEGVEAARKYFLDARKSPNFTYHVYVAYA 392 (770)
Q Consensus 332 ~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r----~~~~e~A~~~f~~Al~~~~~~~~~yi~~a 392 (770)
...|...|.++..... ..+.+.++.++.. ..+.+.|..+|++|.+..+ .......+
T Consensus 171 ~~~A~~~~~~aa~~~~---~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 171 DKKALYLYRKAAELGN---PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHhHHHHHHHHHHhcC---HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 2378888988877663 4566666655544 3478999999999999877 44555555
No 368
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=55.43 E-value=2.2e+02 Score=35.87 Aligned_cols=166 Identities=15% Similarity=0.097 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHH
Q 004187 297 SIDAAIKVFQRALKALPDSEM-LRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFL 375 (770)
Q Consensus 297 ~~e~A~~v~erAi~~~P~s~~-lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~ 375 (770)
+++.-++-|++|+.+.-.... .|-...++-.+.+-|.+|..+|.--.+ ..-.++..|++.+++...+++|--.|+
T Consensus 888 ~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye 963 (1265)
T KOG1920|consen 888 KIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYE 963 (1265)
T ss_pred eHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 455566666666654321111 111222233334444444443321111 124577888888888777777777776
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004187 376 DARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI---LEYADFLSRLNDDRNIRALFERALSSLPP 452 (770)
Q Consensus 376 ~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~---l~ya~~l~~~g~~~~Ar~lferaL~~~p~ 452 (770)
++-+.. ++.- .|...|++.+|..+- -+..+...++. ..++.-+..++++-+|-.+....++.-.
T Consensus 964 ~~Gkle----kAl~-----a~~~~~dWr~~l~~a---~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~- 1030 (1265)
T KOG1920|consen 964 RCGKLE----KALK-----AYKECGDWREALSLA---AQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE- 1030 (1265)
T ss_pred HhccHH----HHHH-----HHHHhccHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH-
Confidence 653321 1111 111135555544432 22333333333 5667777777888778777777776422
Q ss_pred hhH------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004187 453 EES------IEVWKRFTQFEQMYGDLDSTLKVEQ 480 (770)
Q Consensus 453 ~~~------~~lw~~~~~fE~~~Gd~~~~~k~~~ 480 (770)
.. ..-|...+......++.+.+..+..
T Consensus 1031 -~av~ll~ka~~~~eAlrva~~~~~~d~iee~l~ 1063 (1265)
T KOG1920|consen 1031 -EAVALLCKAKEWEEALRVASKAKRDDIIEEVLK 1063 (1265)
T ss_pred -HHHHHHhhHhHHHHHHHHHHhcccchHHHHHHh
Confidence 22 2345444444444554444444433
No 369
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.39 E-value=37 Score=29.31 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=31.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 004187 293 AKSGSIDAAIKVFQRALKALPDS---------EMLRYAFAELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 293 ~~~g~~e~A~~v~erAi~~~P~s---------~~lw~~~a~~~~~~g~~e~A~~iye~al~~ 345 (770)
.+.+++.+|++.+.+.......+ ....+.+|.++...|+.++|...++++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35677888877777766543321 123344555566666666666666666653
No 370
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=54.36 E-value=18 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHc
Q 004187 354 HIQFIRFLRRTEGVEAARKYFLDARK 379 (770)
Q Consensus 354 w~~~~~~~~r~~~~e~A~~~f~~Al~ 379 (770)
|..+++.+.+.|++++|.++|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444555555555555555555443
No 371
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.28 E-value=2.7e+02 Score=28.62 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004187 286 YDYATWNAKSGSIDAAIKVFQRALKALPD 314 (770)
Q Consensus 286 ~~~a~~l~~~g~~e~A~~v~erAi~~~P~ 314 (770)
...|.+..+.++++++.....+++...++
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 45666777777777777777777776553
No 372
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=53.14 E-value=39 Score=26.02 Aligned_cols=27 Identities=11% Similarity=-0.084 Sum_probs=17.9
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCCcHHHH
Q 004187 396 FCQDKDPKLAHNVFEAGLKRFMHEPAYI 423 (770)
Q Consensus 396 ~~~~g~~~~A~~ife~alk~~p~~~~~~ 423 (770)
++. |++++|++..+.+|+..|++..+.
T Consensus 12 ykl-~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 12 YKL-GEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHT-T-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHh-hhHHHHHHHHHHHHhhCCCcHHHH
Confidence 454 788888888888888877776543
No 373
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=52.99 E-value=1.9e+02 Score=27.10 Aligned_cols=82 Identities=16% Similarity=0.093 Sum_probs=46.1
Q ss_pred chhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 261 ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 261 ~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
.+..+|++..|-. .....+.--.....+..+|+-++--+++....+....++.+.+.+|..|.+.|+..++.+++.
T Consensus 69 C~NlKrVi~C~~~----~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 69 CGNLKRVIECYAK----RNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp -S-THHHHHHHHH----TT---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hcchHHHHHHHHH----hcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 3455666655532 222223333344566677777777777777766666677788888888888888888888887
Q ss_pred HHhccC
Q 004187 341 SLLTDS 346 (770)
Q Consensus 341 ~al~~~ 346 (770)
+|.+..
T Consensus 145 ~ACekG 150 (161)
T PF09205_consen 145 EACEKG 150 (161)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 777653
No 374
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=52.78 E-value=2e+02 Score=27.46 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=48.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 290 TWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 290 ~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
..-...++.+++..++...--.-|+..++-+--+-++...|++++|..+|..+....+.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 33344778888888888888888999988888888899999999999999988776554
No 375
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=52.22 E-value=26 Score=23.04 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004187 58 FWKQYVEAYMAVNNDDATKQLFSRCLLI 85 (770)
Q Consensus 58 ~W~~yi~~e~~~~~~~~a~~ifeRaL~~ 85 (770)
.|...+..+.+.|++++|.++|.++...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4788899999999999999999998765
No 376
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=51.20 E-value=60 Score=37.89 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
+....+.-|.++-.-+..++|-.+|++.+..+|+ ..++.||.-+.+.|-..+|+.+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 41 TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 3445566666666677777888888888888887 456677777777777777777776
No 377
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=51.01 E-value=17 Score=23.24 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 004187 424 LEYADFLSRLNDDRNIRALFE 444 (770)
Q Consensus 424 l~ya~~l~~~g~~~~Ar~lfe 444 (770)
+.++..+..+|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555544
No 378
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=50.31 E-value=4.8e+02 Score=30.53 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcH
Q 004187 268 IFTYEQCLMYLYHYPDIWYDY--ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAI 332 (770)
Q Consensus 268 ~~~ye~aL~~~p~~~~~w~~~--a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~ 332 (770)
+..+...+..++.++++...+ ...+...++...+.-.+..++..+|+++....+++...+..|..
T Consensus 51 ~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~ 117 (620)
T COG3914 51 IYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ 117 (620)
T ss_pred HHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhH
Confidence 334444445566666664444 44444455555666666666777777776666666655554433
No 379
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.27 E-value=87 Score=26.98 Aligned_cols=60 Identities=8% Similarity=-0.024 Sum_probs=40.7
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhCCC----c-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 004187 27 EILANSALHLPVAQAAPIYEQLLSVFPT----A-----AKFWKQYVEAYMAVNNDDATKQLFSRCLLIC 86 (770)
Q Consensus 27 ~~l~~~~~~~~i~~Ar~~ye~~l~~fP~----~-----~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~ 86 (770)
..+++....+++..|...+.+....... . ...+..++.+....|+.++|...++.++...
T Consensus 3 l~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 3 LRYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3556677777877775555555543322 2 2345667777888899999999999998775
No 380
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=50.25 E-value=92 Score=33.82 Aligned_cols=64 Identities=14% Similarity=0.271 Sum_probs=52.0
Q ss_pred ChhhHHHHHHHHHHhCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--ChHHHHHHHHHHH
Q 004187 37 PVAQAAPIYEQLLSVFPTA---AKFWKQYVEAYMAVNNDDATKQLFSRCLLICL--QVPLWRCYIRFIR 100 (770)
Q Consensus 37 ~i~~Ar~~ye~~l~~fP~~---~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p--~~~lW~~y~~~~~ 100 (770)
+-++++.++..++...|.. ..||+=++.++...|.++.+..+|+.|+.... -.+|-...+.++.
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 6788999999999999985 46899999999999999999999999988863 3455555555544
No 381
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.06 E-value=29 Score=25.60 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004187 286 YDYATWNAKSGSIDAAIKVFQRALK 310 (770)
Q Consensus 286 ~~~a~~l~~~g~~e~A~~v~erAi~ 310 (770)
+.+|..|...|+.+.|+++++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666553
No 382
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=48.89 E-value=2.7e+02 Score=34.89 Aligned_cols=55 Identities=16% Similarity=0.077 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHH
Q 004187 366 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 422 (770)
Q Consensus 366 ~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~ 422 (770)
++++|..-|++.-..+. -+--|+..|..+.. .+++++-.+.|+.|++.+|+.|.+
T Consensus 534 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 534 DFTQALSEFSYLHGGVG-APLEYLGKALVYQR-LGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHHHHHhcCCCC-CchHHHhHHHHHHH-hhhHHHHHHHHHHHHHhcCCCCcc
Confidence 35566666666555433 34557777776545 488888888888888888776643
No 383
>PF12854 PPR_1: PPR repeat
Probab=47.95 E-value=41 Score=23.00 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLD 376 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~ 376 (770)
.|..++..+.+.|++++|.++|++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344444444444444444444443
No 384
>PF08911 NUP50: NUP50 (Nucleoporin 50 kDa); InterPro: IPR015007 This entry represents a domain found in Nup2, 50 and 61, which are components of the nuclear pore complex. Nucleoporin 50 kDa (NUP50) acts as a cofactor for the importin-alpha:importin-beta heterodimer, which in turn allows for transportation of many nuclear-targeted proteins through nuclear pore complexes. The C terminus of NUP50 binds importin-beta through RAN-GTP, the N terminus binds the C terminus of importin-alpha, while a central domain binds importin-beta. NUP50:importin-alpha:importin-beta then binds cargo and can stimulate nuclear import. The N-terminal domain of NUP50 is also able to actively displace nuclear localisation signals from importin-alpha []. NUP2 encodes a non-essential nuclear pore protein that has a central domain similar to those of Nsp1 and Nup1[, ]. Transport of macromolecules between the nucleus and the cytoplasm of eukaryotic cells occurs through the nuclear pore complex (NPC), a large macromolecular complex that spans the nuclear envelope [, , ]. The structure of the vertebrate NPC has been studied extensively; recent reviews include [, , , ]. The yeast NPC shares several features with the vertebrate NPC, despite being smaller and less elaborate [, ]. Many yeast nuclear pore proteins, or nucleoporins, have been identified by a variety of genetic approaches [, , , ]. nup2 mutants show genetic interactions with nsp1 and nup1 conditional alleles [, ]. Nup1 interacts with the nuclear import factor Srp1 [] and with the small GTPase Ran (encoded by GSP1) [].; GO: 0005643 nuclear pore; PDB: 3TJ3_D 1UN0_D 2C1T_D 2C1M_B.
Probab=47.73 E-value=5.2 Score=33.00 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=11.2
Q ss_pred cCCCchhHHHHHHHHhhhccCC-----CCCCCccccccccccc
Q 004187 728 SQPQPRDFFRIRQMKKARGAAS-----SQTGSASYGSAVSGDL 765 (770)
Q Consensus 728 ~~~~~~d~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 765 (770)
-.-...||...|.++++|.... +.+.+.+-.++|+|--
T Consensus 26 f~~AS~evL~~RkI~k~krr~~~~~~~~~~~~~~~~~~F~g~~ 68 (72)
T PF08911_consen 26 FKRASEEVLAKRKIKKPKRRRAAGASSSASSSSSAFSGFAGFK 68 (72)
T ss_dssp --B--HHHHHCS-S-SB--TTT---------------------
T ss_pred cccCCHHHhhcceeccccccccccccCCCCCcCcccCCCcCCC
Confidence 3345689999999999995432 2333345556666643
No 385
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=47.73 E-value=2.8e+02 Score=34.14 Aligned_cols=71 Identities=7% Similarity=-0.074 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCH
Q 004187 402 PKLAHNVFEAGLKR-FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDL 472 (770)
Q Consensus 402 ~~~A~~ife~alk~-~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~ 472 (770)
.+.-.+.|...++- .-++..+|..-......+|.+-.+..++.++++.....-..+.|...+++-...|.-
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 45566777777775 456778888777888888999999999999998655444566777777766666654
No 386
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=47.62 E-value=68 Score=33.59 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=44.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 292 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 292 l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
+.+.++++.|..+.++.+..+|++..-|.--|.+|.+.|.+.-|.+-++..+.++|++
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 3455677788888888888888887777777778888888888888888888887763
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.34 E-value=38 Score=25.03 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 424 LEYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 424 l~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
+.++..|...|+.+.||.+++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 45667777778888888888877754
No 388
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.61 E-value=3.7e+02 Score=28.24 Aligned_cols=153 Identities=10% Similarity=0.176 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHHhcC
Q 004187 296 GSIDAAIKVFQRALKALPDSEM----LRYAFAELEESRGAIAAAKKLYESLLTDSVN-----TTALAHIQFIRFLRRTEG 366 (770)
Q Consensus 296 g~~e~A~~v~erAi~~~P~s~~----lw~~~a~~~~~~g~~e~A~~iye~al~~~p~-----~~~~~w~~~~~~~~r~~~ 366 (770)
.++++|+.-|++.+...+.-.+ +.-.+..+..+++++++....|.++|..... -....-...+++..-..+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3788999999999998876543 3345566777889999998888887753221 011112222232222333
Q ss_pred HHHHHHHHHHH---HcCC---CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC----c--------HHHHHHHHH
Q 004187 367 VEAARKYFLDA---RKSP---NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH----E--------PAYILEYAD 428 (770)
Q Consensus 367 ~e~A~~~f~~A---l~~~---~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~----~--------~~~~l~ya~ 428 (770)
.+-...+|+.- ++.. +.-...-..++.+.+.. +++-+-.+|+...-+.+.. + .+++-..++
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~-~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDR-GEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeH-HHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 33334444432 2221 11011112233333332 4444445555444443221 1 245556678
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 004187 429 FLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 429 ~l~~~g~~~~Ar~lferaL~~ 449 (770)
++..+.+-.....+|+++|..
T Consensus 200 mYT~qKnNKkLK~lYeqalhi 220 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHI 220 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHh
Confidence 888888889999999999975
No 389
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=46.25 E-value=4e+02 Score=28.55 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCcH--H-HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 399 DKDPKLAHNVFEAGLKRFMHEP--A-YILEYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 399 ~g~~~~A~~ife~alk~~p~~~--~-~~l~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
.+.++.|...++..+....+.. - ..+..++++...|..+-|..+|+...+.
T Consensus 226 ~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 226 EGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred cCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3788888888887766543322 2 2356678888888888888888877764
No 390
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=45.52 E-value=1.5e+02 Score=26.68 Aligned_cols=80 Identities=19% Similarity=0.109 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHcC----C-------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWY---DYATWNAKSG----S-------IDAAIKVFQRALKALPDSEMLRYAFAELEESR 329 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~---~~a~~l~~~g----~-------~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~ 329 (770)
.-+++.+.+..+...+++...|+ .-+.++.... + .-.+.+.|.+++...|.+..+.+.+|.-+...
T Consensus 12 hiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~ 91 (111)
T PF04781_consen 12 HIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLGSV 91 (111)
T ss_pred HHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhH
Confidence 35677788888888888776652 2222222111 1 11244555555555555554444444443333
Q ss_pred CcHHHHHHHHHHHh
Q 004187 330 GAIAAAKKLYESLL 343 (770)
Q Consensus 330 g~~e~A~~iye~al 343 (770)
..|+++...-+++|
T Consensus 92 ~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 92 KYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444433
No 391
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=45.52 E-value=5e+02 Score=29.45 Aligned_cols=143 Identities=13% Similarity=0.059 Sum_probs=87.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 004187 358 IRFLRRTEGVEAARKYFLDARKSPNFT-----YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR 432 (770)
Q Consensus 358 ~~~~~r~~~~e~A~~~f~~Al~~~~~~-----~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~ 432 (770)
+-.+..++++.+|.++|.+..+..... .+++.....-.|- ..+.+.-....-..-+.+|+++-+-+..+-+..+
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK 91 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 334555677777777777766532221 1233332221122 2667766666666666788877777777777788
Q ss_pred cCChhHHHHHHHHHHhCC----Cc-------hhHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcc-cccccccchhh
Q 004187 433 LNDDRNIRALFERALSSL----PP-------EESIEVWKRFTQFEQ--MYGDLDSTLKVEQRRKEALS-RTGEEGASALE 498 (770)
Q Consensus 433 ~g~~~~Ar~lferaL~~~----p~-------~~~~~lw~~~~~fE~--~~Gd~~~~~k~~~R~~~~~~-~~~e~~~~~~e 498 (770)
.+++++|.+.+-.--... ++ ....++|...+..+. ..|.....+.++.|+++.+= ++.+=+..++|
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 899988887765443321 11 112456666666655 46899999999999988665 33444555666
Q ss_pred hhH
Q 004187 499 DSL 501 (770)
Q Consensus 499 ~ll 501 (770)
.+.
T Consensus 172 ~~v 174 (549)
T PF07079_consen 172 RAV 174 (549)
T ss_pred HHH
Confidence 644
No 392
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=44.96 E-value=2.2e+02 Score=36.29 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=98.8
Q ss_pred HHHHHhc-cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 004187 338 LYESLLT-DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK--------SPNFTYHVYVAYALMAFCQDKDPKLAHNV 408 (770)
Q Consensus 338 iye~al~-~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~--------~~~~~~~~yi~~a~le~~~~g~~~~A~~i 408 (770)
++++... ..+. ....+..++..+.+.++.++|..+-.+|.- +.+.+.+.|.+++..++.+ ++...|.+.
T Consensus 960 l~~~v~~~~h~~-~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~-~~~~~al~~ 1037 (1236)
T KOG1839|consen 960 LLNNVMGVLHPE-VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAV-KNLSGALKS 1037 (1236)
T ss_pred HHHHhhhhcchh-HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhc-cCccchhhh
Confidence 5543332 2333 567788889999999999999988777752 2344678899999888886 788888888
Q ss_pred HHHHHHh----C-CCcHH---HHHHHHHHHHhcCChhHHHHHHHHHHhCCC------chhHHHHHHHHHHHHHHcCCHHH
Q 004187 409 FEAGLKR----F-MHEPA---YILEYADFLSRLNDDRNIRALFERALSSLP------PEESIEVWKRFTQFEQMYGDLDS 474 (770)
Q Consensus 409 fe~alk~----~-p~~~~---~~l~ya~~l~~~g~~~~Ar~lferaL~~~p------~~~~~~lw~~~~~fE~~~Gd~~~ 474 (770)
+.++++. + ++.|. +......++...++++.|..+.+.|++... .-........+++.-...|+...
T Consensus 1038 ~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~ 1117 (1236)
T KOG1839|consen 1038 LNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRN 1117 (1236)
T ss_pred HHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHH
Confidence 8888774 2 33333 333444445566788999999999987321 11223455555555556677766
Q ss_pred HHHHHHHHHHhccc
Q 004187 475 TLKVEQRRKEALSR 488 (770)
Q Consensus 475 ~~k~~~R~~~~~~~ 488 (770)
+...++-....+++
T Consensus 1118 al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1118 ALEHEKVTYGIYKE 1131 (1236)
T ss_pred HHHHHhhHHHHHHH
Confidence 66666666666663
No 393
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=44.80 E-value=84 Score=28.75 Aligned_cols=61 Identities=23% Similarity=0.089 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCcHHHHHH----HHHHHHHhCcHHHHHHHHHHHhc
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKA-------LPDSEMLRYA----FAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~-------~P~s~~lw~~----~a~~~~~~g~~e~A~~iye~al~ 344 (770)
++--++..+...|++++++.--++++.. +-+...+|+. .+..++..|..++|.+.|+.+.+
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3455667778888888887777777654 4455667753 35556666777777777766543
No 394
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=44.77 E-value=44 Score=22.05 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004187 57 KFWKQYVEAYMAVNNDDATKQLFSRCLLI 85 (770)
Q Consensus 57 ~~W~~yi~~e~~~~~~~~a~~ifeRaL~~ 85 (770)
..|...+..+.+.|+++.|..+|+.+...
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35788899999999999999999988653
No 395
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.04 E-value=3.8e+02 Score=27.58 Aligned_cols=166 Identities=11% Similarity=0.123 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHcCCCCC-HHHHHHHHH---
Q 004187 319 RYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR-TEGVEAARKYFLDARKSPNFT-YHVYVAYAL--- 393 (770)
Q Consensus 319 w~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r-~~~~e~A~~~f~~Al~~~~~~-~~~yi~~a~--- 393 (770)
.+.+|.+.++.++++++...+++++...+....+-...+...+.. .+....+..++....+..... .........
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 346789999999999999999999998775322222222222211 222333333333332211100 011111110
Q ss_pred --HHHhcCCCHHHHHHHHHHHHHhCCCcH---HHH-HHHHHH---HHhcCC-------hhHHHHHHHHHHhC----CCch
Q 004187 394 --MAFCQDKDPKLAHNVFEAGLKRFMHEP---AYI-LEYADF---LSRLND-------DRNIRALFERALSS----LPPE 453 (770)
Q Consensus 394 --le~~~~g~~~~A~~ife~alk~~p~~~---~~~-l~ya~~---l~~~g~-------~~~Ar~lferaL~~----~p~~ 453 (770)
++.....--.....+.+..|-....++ .++ ..-++| +..... .++|...|+.|+.. +|+.
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Confidence 100000001122333333222122222 222 223333 333322 26788999998873 5544
Q ss_pred hH--HHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 004187 454 ES--IEVWKRFTQFEQ-MYGDLDSTLKVEQRRKE 484 (770)
Q Consensus 454 ~~--~~lw~~~~~fE~-~~Gd~~~~~k~~~R~~~ 484 (770)
+. ..+...|..|.. -.|+...+.++.+.++.
T Consensus 164 ~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 164 HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 43 457777788875 46999888887776654
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.84 E-value=2.6e+02 Score=31.01 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=51.0
Q ss_pred cCCCCCH---HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCcHH--HHHHHHHHHHhcC--CHHHHHHHHHHHHhhc
Q 004187 17 VADKYNV---ETAEILANSALHLPVAQAAPIYEQLLSVFPTAAK--FWKQYVEAYMAVN--NDDATKQLFSRCLLIC 86 (770)
Q Consensus 17 ~~~P~d~---~aw~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~~~--~W~~yi~~e~~~~--~~~~a~~ifeRaL~~~ 86 (770)
+.||+.+ ..|....+.+...++..|..+|+.++..-|.... .+..+.+.+..+. ++.+|...|++++...
T Consensus 123 ~~~p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 123 LENPYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 4688766 4566666677778999999999999987454443 5555656665554 6789999999987763
No 397
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=43.75 E-value=5.9e+02 Score=29.78 Aligned_cols=132 Identities=11% Similarity=-0.152 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHH--HHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHH-
Q 004187 296 GSIDAAIKVFQRALKALPDSEMLRYAF--AELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK- 372 (770)
Q Consensus 296 g~~e~A~~v~erAi~~~P~s~~lw~~~--a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~- 372 (770)
+...-+...+...+..+|.+..+.... ...+...++...+.-....++..++. +..+..+++....+.+....+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPE-NCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcc-cchHHHHHHHHHHHhhhHHHHHHH
Confidence 334446666666777788888876554 44444456666677777888888887 67788888776666555544444
Q ss_pred HHHHHHcCCCCCHHHHHHH------HHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 373 YFLDARKSPNFTYHVYVAY------ALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 429 (770)
Q Consensus 373 ~f~~Al~~~~~~~~~yi~~------a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~ 429 (770)
+-+.+....+.+....-.. +.+..- .|+..++....++.....|..+.+...++.-
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 4444666555444332222 333222 3777778888888888888877776665543
No 398
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=43.66 E-value=4.3e+02 Score=28.12 Aligned_cols=101 Identities=9% Similarity=0.092 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHhCCC---cH
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKS---PNFTYHVYVAYALMAFCQDKDPK---LAHNVFEAGLKRFMH---EP 420 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~---~~~~~~~yi~~a~le~~~~g~~~---~A~~ife~alk~~p~---~~ 420 (770)
...+|...+.++...++.+.+.++..+.... .....++++..+.+-+- .+|.. +..+...-.+++-.+ .-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~-y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLI-YGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3567888888777777666665555444332 11123444333332221 13322 222222223333222 11
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 421 AYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 421 ~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
.+-..++-|.+...++.+|-.+|-..+..+.
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 2333445566666677777777777776554
No 399
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.01 E-value=3.7e+02 Score=32.55 Aligned_cols=48 Identities=21% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 004187 416 FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQF 465 (770)
Q Consensus 416 ~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~f 465 (770)
.|+++.+|-.|+.++.+++..+....++.+|+..+| ....+.+.++..
T Consensus 832 l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sCp--W~K~l~md~ie~ 879 (913)
T KOG1972|consen 832 LPDENSKWRDYLEALSKLLNKERSKAASTKALDSCP--WAKWLEMDVIED 879 (913)
T ss_pred CCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhcCc--hHHHHHHHHHHh
Confidence 577889999999999999999999999999999999 333444444433
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.93 E-value=3e+02 Score=30.61 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC--------CCHHH
Q 004187 318 LRYAFAELEESRGAIAAAKKLYESLLTDSVNT--TALAHIQFIRFLRRTEGVEAARKYFLDARKSPN--------FTYHV 387 (770)
Q Consensus 318 lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~--~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~--------~~~~~ 387 (770)
.+..+++.|...|+++.|.+.|-|+-..+... ..+.|+.++......+++-....+-.+|...+. ....+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 44567788888899999999998865554431 356788888888888888777777777665431 01233
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004187 388 YVAYALMAFCQDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 388 yi~~a~le~~~~g~~~~A~~ife~alk 414 (770)
....++.+... ++++.|.+.|-.+..
T Consensus 232 ~C~agLa~L~l-kkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 232 KCAAGLANLLL-KKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCCC
Confidence 44444444454 677777777755544
No 401
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=42.79 E-value=43 Score=21.96 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHc
Q 004187 354 HIQFIRFLRRTEGVEAARKYFLDARK 379 (770)
Q Consensus 354 w~~~~~~~~r~~~~e~A~~~f~~Al~ 379 (770)
|..++..+.+.|++++|.++|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555556666666666655544
No 402
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.81 E-value=5.4e+02 Score=30.96 Aligned_cols=109 Identities=10% Similarity=0.128 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHH-HHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004187 333 AAAKKLYESLLTDSVNTTALAHIQFIR-FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEA 411 (770)
Q Consensus 333 e~A~~iye~al~~~p~~~~~~w~~~~~-~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~ 411 (770)
++.+.+.++.++.+-. ..+.|..++- |+.+ ...++++|+-.........-.+..+....-.+.+--.+++..
T Consensus 128 ~rL~~iv~rmi~kcl~-d~e~~~aiGia~E~~------rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~ 200 (929)
T KOG2062|consen 128 QRLRDIVERMIQKCLD-DNEYKQAIGIAFETR------RLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRL 200 (929)
T ss_pred HHHHHHHHHHHHHhhh-hhHHHHHHhHHhhhh------hHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5667777777777665 3455554442 2221 234455543222111111111111111221244445566667
Q ss_pred HHHhCCCcH-HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 412 GLKRFMHEP-AYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 412 alk~~p~~~-~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
.++.+.+.+ .-+...++++..+++.+.+..++++.++
T Consensus 201 lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 201 LVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred HHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 776654433 2234566777778888888888888776
No 403
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.40 E-value=7.3e+02 Score=30.11 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=41.3
Q ss_pred ChhhHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Q 004187 37 PVAQAAPIYEQLLSVFPT--AAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVY 103 (770)
Q Consensus 37 ~i~~Ar~~ye~~l~~fP~--~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~~y~~~~~~~~ 103 (770)
.+++|..+-+.....-|. -.++|..||+.++..+.+++|....-+++.. +...|.....-..+..
T Consensus 371 ~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn--~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 371 KYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN--NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc--hHHHHHHHHHHhcccc
Confidence 455555544444433333 4578999999999999999988876666332 3456665555544433
No 404
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=41.20 E-value=84 Score=32.93 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAE 324 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~ 324 (770)
..++...-++.+..+|.++.-|-.-+-+|.+.|...-|++.+++.+.++|+....-..-+.
T Consensus 197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456677888999999999999999999999999999999999999999998765444333
No 405
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=40.89 E-value=1.1e+02 Score=31.76 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 302 IKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 302 ~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
+..|.+|+...|.+...|..+|.+....|+.=.|.-.|-|++
T Consensus 2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 2 ERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 444555555555555555555555554444444444444444
No 406
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=40.18 E-value=1.2e+02 Score=31.62 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CChHHHHHHHHHHHH
Q 004187 41 AAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC-LQVPLWRCYIRFIRK 101 (770)
Q Consensus 41 Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~-p~~~lW~~y~~~~~~ 101 (770)
|+..|.+|+...|.++..|.+++-.+...|+.=.|.=.|-|++... |......+......+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999888889999998663 655554444444443
No 407
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=40.07 E-value=1.4e+02 Score=25.19 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHH---HHHHHHHhcCChhHHH
Q 004187 389 VAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL---EYADFLSRLNDDRNIR 440 (770)
Q Consensus 389 i~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l---~ya~~l~~~g~~~~Ar 440 (770)
+..+.-+|.. .+.++|..++++++++.++.++-|. ..+..+.+.|++.+..
T Consensus 10 ie~GlkLY~~-~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 10 IEKGLKLYHQ-NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHhcc-chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445653 7788888888888888777665444 3344555556654443
No 408
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=40.03 E-value=4.9e+02 Score=27.79 Aligned_cols=62 Identities=24% Similarity=0.131 Sum_probs=53.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 004187 425 EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 488 (770)
Q Consensus 425 ~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~ 488 (770)
.-+.++...|.+++|.++.+++++..| -+...|.-++......||--++.+-+.|..+.+.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldp--L~e~~nk~lm~~la~~gD~is~~khyerya~vlea 345 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDP--LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCh--hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 446677889999999999999999888 66778888888888999998999999998888874
No 409
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=39.62 E-value=3.5e+02 Score=25.87 Aligned_cols=100 Identities=16% Similarity=0.000 Sum_probs=57.9
Q ss_pred hCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 004187 329 RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNV 408 (770)
Q Consensus 329 ~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~i 408 (770)
.++.+++..+++.+--..|. ...+-+.-+-+....|++.+|..+|.+......+..-.---++.+++.. ||
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al-~D------- 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK-GD------- 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc-CC-------
Confidence 56777777777766555565 3333333344456678888888888888877655321111122222221 22
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 409 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 409 fe~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
.-|..|++-....+...+++.+.......
T Consensus 94 ------------p~Wr~~A~~~le~~~~~~a~~Lv~al~g~ 122 (153)
T TIGR02561 94 ------------AEWHVHADEVLARDADADAVALVRALLGA 122 (153)
T ss_pred ------------hHHHHHHHHHHHhCCCHhHHHHHHHHhcc
Confidence 34666666666666777777666655543
No 410
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.24 E-value=7.7e+02 Score=29.78 Aligned_cols=111 Identities=9% Similarity=-0.036 Sum_probs=54.9
Q ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHH--HHHHHH--HhCcHHHHH
Q 004187 262 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALK-ALPDSEMLRYA--FAELEE--SRGAIAAAK 336 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~-~~P~s~~lw~~--~a~~~~--~~g~~e~A~ 336 (770)
....|+..+.++++..|-...+.|..++-.++. ...+++++|+- .+.....+-+. ++.-.. +.......+
T Consensus 125 ~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~-----~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr 199 (929)
T KOG2062|consen 125 PIDQRLRDIVERMIQKCLDDNEYKQAIGIAFET-----RRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLR 199 (929)
T ss_pred CCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhh-----hhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345677788888888887777888777765543 24456666532 22222222111 111111 111222222
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC
Q 004187 337 KLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP 381 (770)
Q Consensus 337 ~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~ 381 (770)
.++...+..... -++..++.+.-.++.+.+.+++++.++.+
T Consensus 200 ~lv~~y~~~~~P----Dy~~vc~c~v~Ldd~~~va~ll~kL~~e~ 240 (929)
T KOG2062|consen 200 LLVKTYLKLPSP----DYFSVCQCYVFLDDAEAVADLLEKLVKED 240 (929)
T ss_pred HHHHHHccCCCC----CeeeeeeeeEEcCCHHHHHHHHHHHHhcc
Confidence 222222222111 13344445555677777777777777643
No 411
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.03 E-value=3.9e+02 Score=26.34 Aligned_cols=117 Identities=18% Similarity=0.186 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcC-CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc--HHHHHHHHHHHHHhCcHHHHHHHH
Q 004187 266 RIIFTYEQCLMYLY-HYPD-IWYDYATWNAKSGSIDAAIKVFQRALKAL--PDS--EMLRYAFAELEESRGAIAAAKKLY 339 (770)
Q Consensus 266 r~~~~ye~aL~~~p-~~~~-~w~~~a~~l~~~g~~e~A~~v~erAi~~~--P~s--~~lw~~~a~~~~~~g~~e~A~~iy 339 (770)
.++..|...-.-.. .+|. +.+..+.++.+.|+-..|...|..+-.-. |.- ....+.-+-++...|.|++...-.
T Consensus 76 ~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srv 155 (221)
T COG4649 76 DALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRV 155 (221)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHh
Confidence 34445555444333 3333 46778888899999999999999877643 432 234455566777889999888777
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC
Q 004187 340 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 340 e~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~ 382 (770)
+-+-.....-...+.-.++-...+.|++..|+++|.+...+..
T Consensus 156 epLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ 198 (221)
T COG4649 156 EPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQ 198 (221)
T ss_pred hhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcccc
Confidence 6544322221344556777777889999999999999988544
No 412
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.85 E-value=3.3e+02 Score=25.09 Aligned_cols=14 Identities=14% Similarity=-0.031 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHH
Q 004187 400 KDPKLAHNVFEAGL 413 (770)
Q Consensus 400 g~~~~A~~ife~al 413 (770)
|..++|.+-|+.+-
T Consensus 114 Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 114 GRKEEALKEFRMAG 127 (144)
T ss_dssp T-HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH
Confidence 56666666555544
No 413
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=37.80 E-value=7.9e+02 Score=29.48 Aligned_cols=184 Identities=14% Similarity=0.206 Sum_probs=96.8
Q ss_pred HHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 004187 121 MLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200 (770)
Q Consensus 121 aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e 200 (770)
|.+++...| ...+|....+.-.. ...++.|...|-|+-..+.. .+-+...+. .++...+.-+..
T Consensus 682 A~qfiEdnP-HprLWrllAe~Al~---------Kl~l~tAE~AFVrc~dY~Gi---k~vkrl~~i---~s~~~q~aei~~ 745 (1189)
T KOG2041|consen 682 AIQFIEDNP-HPRLWRLLAEYALF---------KLALDTAEHAFVRCGDYAGI---KLVKRLRTI---HSKEQQRAEISA 745 (1189)
T ss_pred HHHHHhcCC-chHHHHHHHHHHHH---------HHhhhhHhhhhhhhccccch---hHHHHhhhh---hhHHHHhHhHhh
Confidence 334443344 45799887766331 23456666666555443321 111111111 122333334555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcC-
Q 004187 201 YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLY- 279 (770)
Q Consensus 201 ~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p- 279 (770)
+.++|++|.+.|-+...-.-++.- ..-+--|.+..++.+.-..+.|+. ..+.|.....
T Consensus 746 ~~g~feeaek~yld~drrDLAiel-------------r~klgDwfrV~qL~r~g~~d~dD~--------~~e~A~r~ig~ 804 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRDLAIEL-------------RKKLGDWFRVYQLIRNGGSDDDDE--------GKEDAFRNIGE 804 (1189)
T ss_pred hhcchhHhhhhhhccchhhhhHHH-------------HHhhhhHHHHHHHHHccCCCcchH--------HHHHHHHHHHH
Confidence 667888888877542111111100 001124555555554322222211 1222222211
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHH---------HHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 280 --HYPDIWYDYATWNAKSGSIDAAIK---------VFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 280 --~~~~~w~~~a~~l~~~g~~e~A~~---------v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
.+-.-|...+++|...|+.+.-.+ -+|......|++..+.-.+|+.+.+.|.-++|.+.|-+
T Consensus 805 ~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 805 TFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 123458888888888776554333 24555667899999999999999999999999888854
No 414
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.59 E-value=4.2e+02 Score=31.10 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
..++||...++. +-.++ +..+.|+++.|.++..+ -++..=|-.++++..+.+++..|.++|.++-...
T Consensus 629 ~~e~AL~~s~D~-d~rFe---lal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--- 696 (794)
T KOG0276|consen 629 MKEQALELSTDP-DQRFE---LALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLG--- 696 (794)
T ss_pred chHhhhhcCCCh-hhhhh---hhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchh---
Confidence 567888766543 33333 34567888888776543 3567779999999999999999999998875532
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEA 411 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~ 411 (770)
.+..++...|+-+....+-..+.+.... -.+++. +-..|+++++.+++..
T Consensus 697 ------~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~AF~~-----~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 697 ------SLLLLYTSSGNAEGLAVLASLAKKQGKN-NLAFLA-----YFLSGDYEECLELLIS 746 (794)
T ss_pred ------hhhhhhhhcCChhHHHHHHHHHHhhccc-chHHHH-----HHHcCCHHHHHHHHHh
Confidence 2222333345544444444444443332 222322 2225898887776543
No 415
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=37.32 E-value=8e+02 Score=29.43 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=31.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004187 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQR 307 (770)
Q Consensus 271 ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~er 307 (770)
+|.+....|.+.++.-..|+++.+.|.-++|.+.|-|
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 5667778899999999999999999999998887754
No 416
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.19 E-value=3.2e+02 Score=32.21 Aligned_cols=96 Identities=11% Similarity=0.151 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE------MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAH 354 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~------~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w 354 (770)
|.-+|...+.. .+..++..+++.|+..+...|.+. .+.-.++.+|..+.+.|+|.++++.|=+.+|. ...--
T Consensus 354 H~iLWn~A~~~-F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q 431 (872)
T KOG4814|consen 354 HTLLWNTAKKL-FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQ 431 (872)
T ss_pred HHHHHHhhHHH-HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHH
Confidence 33456555543 345578999999999999888652 34557788999999999999999999998876 22211
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 004187 355 IQFIRFLRRTEGVEAARKYFLDAR 378 (770)
Q Consensus 355 ~~~~~~~~r~~~~e~A~~~f~~Al 378 (770)
........-.+..++|..+.....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHH
Confidence 122222233466677776665543
No 417
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.14 E-value=1.6e+02 Score=34.44 Aligned_cols=79 Identities=22% Similarity=0.168 Sum_probs=52.6
Q ss_pred HhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004187 328 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN 407 (770)
Q Consensus 328 ~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ 407 (770)
+...++.++...+.-+..... .+...+.-+++....+..+.|-.+|++.+...+. +.++.||.-+++. |-...|+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~ 95 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEAL-TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNT-GLAKDAQL 95 (578)
T ss_pred HHhhHHHHHHHHHHhCCccch-hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhh-hhhhHHHH
Confidence 445566677666665554433 3445556667777777778888888888776654 6777777777764 76667776
Q ss_pred HHH
Q 004187 408 VFE 410 (770)
Q Consensus 408 ife 410 (770)
++.
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 665
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.06 E-value=1e+02 Score=30.48 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 004187 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL 87 (770)
Q Consensus 38 i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p 87 (770)
.+..+...++.+...|+ ..+...|+..+...|+.++|++..+++...+|
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 55677888999999984 56889999999999999999999999999998
No 419
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.03 E-value=1.4e+02 Score=35.55 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH---------hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004187 330 GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR---------TEGVEAARKYFLDARKSPNFTYHVYVAYALMAF 396 (770)
Q Consensus 330 g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r---------~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~ 396 (770)
|+-++|.++.-.+++......+++++..++.+.. .+..+.|..+|++|-+..|. ...-+++|.++.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~-~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL-EYSGINLATLLR 331 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch-hhccccHHHHHH
Confidence 5556666665555554333233444433333322 24455666666666665543 333344444443
No 420
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=36.49 E-value=2.6e+02 Score=30.81 Aligned_cols=24 Identities=8% Similarity=-0.117 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNA 293 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~ 293 (770)
++..+++.+|+..++|+.+..++.
T Consensus 111 ll~~arq~FpD~SDl~~aLreLl~ 134 (372)
T PRK15338 111 FLRQARKLFPDPSDLVLVLRELLR 134 (372)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Confidence 445555555555555555555544
No 421
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=36.47 E-value=2.2e+02 Score=31.30 Aligned_cols=41 Identities=32% Similarity=0.365 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 300 AAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 300 ~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
+|+-++|.++...|.+..+.+.+..+|...|-.+.|..+|.
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555555555555555555555555555555555553
No 422
>KOG4437 consensus ATP-dependent DNA ligase III [Replication, recombination and repair]
Probab=35.78 E-value=3.4e+02 Score=29.13 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCChhHHHH
Q 004187 367 VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL-----EYADFLSRLNDDRNIRA 441 (770)
Q Consensus 367 ~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l-----~ya~~l~~~g~~~~Ar~ 441 (770)
-+..+++|.+++...+. ..+ +. |. .+..++|..+|-.--+.+|+....|. .|..-+.++.+.+...+
T Consensus 213 DkKLI~lfsKiLn~~~~-~~~-----~~-Y~-~~S~~~~i~i~~~~~K~~~~~K~~~siQ~~D~~L~rLSKi~~~D~~~~ 284 (482)
T KOG4437|consen 213 DKKLIKLFSKILNCNPD-DMA-----RD-YE-QGSVSETIRVFFEQSKSFPPAKSLLTIQEVDEFLLRLSKLTKEDEQQQ 284 (482)
T ss_pred HHHHHHHHHHHHccChH-HHH-----HH-HH-hccchhhhhhhHhhccCCCCcccceeHHHHHHHHHHHhcccchHHHHH
Confidence 35678888888876542 111 11 22 37888899999888888887665552 33333334445566666
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHH
Q 004187 442 LFERALSSLPPEESIEVWKRFTQFEQM 468 (770)
Q Consensus 442 lferaL~~~p~~~~~~lw~~~~~fE~~ 468 (770)
.++-+-+.+. .+...+..+++.-+..
T Consensus 285 ~L~~~A~R~~-~~~L~~iIRLIr~~L~ 310 (482)
T KOG4437|consen 285 ALQDIASRCT-ANDLKCIIRLIKHDLK 310 (482)
T ss_pred HHHHHHHhcc-cchHHHHHHHHHHHhc
Confidence 6666666555 3445666666665543
No 423
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.19 E-value=1.2e+02 Score=29.90 Aligned_cols=46 Identities=26% Similarity=0.198 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004187 267 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP 313 (770)
Q Consensus 267 ~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P 313 (770)
.+...++.+...| ++.++..++.++..+|+.++|.+..+++....|
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445566666555 678899999999999999999999999999999
No 424
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=34.57 E-value=4.9e+02 Score=26.16 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhCcHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD----SEMLRYAFAELEESRGAIAA 334 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~----s~~lw~~~a~~~~~~g~~e~ 334 (770)
.+++-+.+|.+|. ..+.++++.+|-++++.... ++++...+|.++.+.++++.
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 4455555555554 23455555555555554322 24444455555555554443
No 425
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.38 E-value=51 Score=27.43 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHHhC
Q 004187 400 KDPKLAHNVFEAGLKRF 416 (770)
Q Consensus 400 g~~~~A~~ife~alk~~ 416 (770)
|++++|..+|..+++.|
T Consensus 20 gny~eA~~lY~~ale~~ 36 (75)
T cd02680 20 GNAEEAIELYTEAVELC 36 (75)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 67777777777777654
No 426
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.37 E-value=4.3e+02 Score=28.08 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH---hCCC---cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004187 389 VAYALMAFCQDKDPKLAHNVFEAGLK---RFMH---EPAYILEYADFLSRLNDDRNIRALFERA 446 (770)
Q Consensus 389 i~~a~le~~~~g~~~~A~~ife~alk---~~p~---~~~~~l~ya~~l~~~g~~~~Ar~lfera 446 (770)
..++.++|. .|.+..|.....-.+. +.-+ -..+++.....+....+..+++.-+..|
T Consensus 129 ~Kli~l~y~-~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 129 CKLIYLLYK-TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHHh-cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 345556666 4999999888776654 3323 2355555556666666666666655544
No 427
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.30 E-value=6.5e+02 Score=27.46 Aligned_cols=50 Identities=30% Similarity=0.349 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 402 PKLAHNVFEAGLKR--FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 402 ~~~A~~ife~alk~--~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
.+.+..+.+..... ....--+|-..++++.++|..++|+..|++|+..-+
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~ 396 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALAR 396 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Confidence 44555555554443 112223445556666666666666666666666433
No 428
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=34.22 E-value=3.7e+02 Score=24.59 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=28.8
Q ss_pred CChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 004187 36 LPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVN 70 (770)
Q Consensus 36 ~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~ 70 (770)
+..+......+.++...+.+..+...++..+.+.+
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYD 55 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC
Confidence 45777888889988888888889999999988764
No 429
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=33.53 E-value=1e+02 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 317 MLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 317 ~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
+-|+.+|..+-..|++++|+.+|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456677777777788888888843
No 430
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.39 E-value=9.9e+02 Score=29.32 Aligned_cols=87 Identities=14% Similarity=0.217 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDS-EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s-~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
++...||.++...|++++|...|-++|...-.+ ....| .....+-.-..+++.+.+..-. +.+=-..++..+
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncY 441 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCY 441 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHH
Confidence 577778888888888888888887777643222 22211 1111222233344444443322 222223445566
Q ss_pred HHhcCHHHHHHHHHH
Q 004187 362 RRTEGVEAARKYFLD 376 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~ 376 (770)
.+.++.++..++.++
T Consensus 442 iKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 442 IKLKDVEKLTEFISK 456 (933)
T ss_pred HHhcchHHHHHHHhc
Confidence 666777666655544
No 431
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.37 E-value=2.9e+02 Score=28.55 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---c---HHHHHHHHHHHHHhCc
Q 004187 264 NKRIIFTYEQCLMYLYH------YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD---S---EMLRYAFAELEESRGA 331 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~------~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~---s---~~lw~~~a~~~~~~g~ 331 (770)
...++.++++|...+.. -..+-.+.|..+...|++++|.++|+.+....-. . ..+...+..+....|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 34556666777665432 2245567777777788888888888877554321 1 2223344455555555
Q ss_pred HHHHHH
Q 004187 332 IAAAKK 337 (770)
Q Consensus 332 ~e~A~~ 337 (770)
.+....
T Consensus 234 ~~~~l~ 239 (247)
T PF11817_consen 234 VEDYLT 239 (247)
T ss_pred HHHHHH
Confidence 554443
No 432
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=33.12 E-value=90 Score=22.24 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALK 310 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~ 310 (770)
++..+|.+-...+++++|..-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555555555555555555554
No 433
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.95 E-value=6.7e+02 Score=27.23 Aligned_cols=98 Identities=17% Similarity=0.093 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhc----cCCCCcHHHH---HHHHHHHHH----hcCHHHHHHHHHHHHcCCC-C
Q 004187 316 EMLRYAFAELEESRGAIAAAKKLYESLLT----DSVNTTALAH---IQFIRFLRR----TEGVEAARKYFLDARKSPN-F 383 (770)
Q Consensus 316 ~~lw~~~a~~~~~~g~~e~A~~iye~al~----~~p~~~~~~w---~~~~~~~~r----~~~~e~A~~~f~~Al~~~~-~ 383 (770)
.++|.+.|.++.+.|+.+.|.+.+.+... ..-. .++. +.++-|+.. ...+++|..++++.-.-.+ .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k--iDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN 181 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK--IDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN 181 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 45667777777777776666555444332 2221 1222 222333322 3445555555555433211 1
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 384 TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 384 ~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
...+|..+-.| . -.++++|-.+|-..+..|..
T Consensus 182 RlKvY~Gly~m--s-vR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 182 RLKVYQGLYCM--S-VRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hHHHHHHHHHH--H-HHhHHHHHHHHHHHcccccc
Confidence 24444443222 1 24677777777777766644
No 434
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=32.65 E-value=1.1e+02 Score=38.45 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHH
Q 004187 39 AQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVN--NDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETR 115 (770)
Q Consensus 39 ~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~--~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar 115 (770)
+..-..+..++..-....++....+..+.+.+ +++.|+.+..+.-...+ ..+-++.|+-|+-..+.+ ++.|.
T Consensus 795 n~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLvDvn~L-----y~~AL 869 (928)
T PF04762_consen 795 NKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLVDVNKL-----YDVAL 869 (928)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeeccHHHH-----HHHHh
Confidence 44444455555444556677788888888888 78888888887766654 567788888887665543 55566
Q ss_pred HHHHHHHH-----hcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHc
Q 004187 116 KAFDFMLS-----HVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV 169 (770)
Q Consensus 116 ~~~e~aL~-----~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~ 169 (770)
..|+.-|- +-.+|| .+|+=||.+........+.-.|+.-.+-|++||.
T Consensus 870 G~YDl~Lal~VAq~SQkDP------KEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~ 922 (928)
T PF04762_consen 870 GTYDLELALMVAQQSQKDP------KEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALR 922 (928)
T ss_pred hhcCHHHHHHHHHHhccCh------HHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHH
Confidence 66665332 235677 5777777654333322233334444555555553
No 435
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=32.12 E-value=85 Score=20.58 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHc
Q 004187 354 HIQFIRFLRRTEGVEAARKYFLDARK 379 (770)
Q Consensus 354 w~~~~~~~~r~~~~e~A~~~f~~Al~ 379 (770)
|..++..+.+.|+++.|..+|+...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444555555555556555555543
No 436
>KOG3521 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=31.26 E-value=6.8e+02 Score=29.68 Aligned_cols=81 Identities=14% Similarity=0.280 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhc----C------CHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhccCcch
Q 004187 41 AAPIYEQLLSVFPTAAKFWKQYVEAYMAV----N------NDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEG 110 (770)
Q Consensus 41 Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~----~------~~~~a~~ifeRaL~~~p~~~lW~~y~~~~~~~~~~~~~~~ 110 (770)
|+.+|-.+-.++-.+..+|...+.=-... | .+++...-|. .+...|..|+.+..+.
T Consensus 221 aerlFsNv~~l~~~n~slW~~~l~P~laksr~TgepLd~~~lq~GFl~f~---------s~f~pY~~ycle~s~c----- 286 (846)
T KOG3521|consen 221 AERLFSNVPTLFNVNRSLWLQVLEPILAKSRETGEPLDPNYLQNGFLDFG---------SWFRPYTNYCLEHSDC----- 286 (846)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH---------HhhhHHHHHHHHHhHH-----
Confidence 55677777777777788888877633321 1 1122222222 3567888888876542
Q ss_pred HHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCC
Q 004187 111 QEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLP 146 (770)
Q Consensus 111 ~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~ 146 (770)
..-+++... ...++.+|+.|.+.+.
T Consensus 287 m~y~rel~~-----------~n~lFrafvtW~Ekqk 311 (846)
T KOG3521|consen 287 MKYIRELLK-----------ENELFRAFVTWAEKQK 311 (846)
T ss_pred HHHHHHHhc-----------cchHHHHHHHHHHhhh
Confidence 222222221 2368999999987643
No 437
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=29.77 E-value=85 Score=22.37 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 004187 318 LRYAFAELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 318 lw~~~a~~~~~~g~~e~A~~iye~al~~ 345 (770)
++..+|.+....++|++|..-|+++|++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4566777777777788888777777764
No 438
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=29.59 E-value=9.1e+02 Score=28.35 Aligned_cols=66 Identities=18% Similarity=0.015 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHh
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFC-QDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~-~~~~yi~~a~le~~-~~g~~~~A~~ife~alk~ 415 (770)
...+|.+|+....+.+++..||.-|+++.+.... .+++......+..- -.-++...+++|+...+-
T Consensus 586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dhlak~ 653 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAKP 653 (1141)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhccC
Confidence 4578999999999999999999999999886432 34555554443211 012455666666666554
No 439
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.12 E-value=2e+03 Score=31.60 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCCHH---HHHHHHHHHHHhC-CCcHHHH
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFC----QDKDPK---LAHNVFEAGLKRF-MHEPAYI 423 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~----~~g~~~---~A~~ife~alk~~-p~~~~~~ 423 (770)
..+...+.|..+.+..++|-+.|..|++....-...|..|+..... ..++.. .|..+|-.|.... .....-+
T Consensus 2813 eff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~ 2892 (3550)
T KOG0889|consen 2813 EFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKL 2892 (3550)
T ss_pred HHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHH
Confidence 3444556677777888888888888888766667788888776442 122222 3444454554443 2233344
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHhCCCchhHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHhcc
Q 004187 424 LEYADFLSRLNDDR-NIRALFERALSSLPPEESIEVWKRFTQ---FEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 424 l~ya~~l~~~g~~~-~Ar~lferaL~~~p~~~~~~lw~~~~~---fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+..+.++....+-. -.-++|++.+...| .-.|..|+- --..+++...+..++.++.+.+|
T Consensus 2893 iakvLwLls~dda~~~l~~~~~k~l~~ip----~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yP 2956 (3550)
T KOG0889|consen 2893 IAKVLWLLSFDDSLGTLGDVFDKFLGEIP----VWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYP 2956 (3550)
T ss_pred HHHHHHHHHhccccchHHHHHHHhhccCC----chhhhhhhHHHHhhccccchhHHHHHHHHHHHhch
Confidence 44444444443322 23366777777666 333444443 22345677788888999999998
No 440
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.89 E-value=2e+03 Score=31.57 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh-----cCH---HHHHHHHHHHHcCC-CCCHHH
Q 004187 317 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT-----EGV---EAARKYFLDARKSP-NFTYHV 387 (770)
Q Consensus 317 ~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~-----~~~---e~A~~~f~~Al~~~-~~~~~~ 387 (770)
++...-|.++++.|+.++|-+.|..|++.+.. ...+|..++.+.... ++. ..|..+|=+|.... .....-
T Consensus 2813 eff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~-l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk 2891 (3550)
T KOG0889|consen 2813 EFFTLKGMFLEKLGKFEEANKAFSAAVQIDDG-LGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARK 2891 (3550)
T ss_pred HHHHhhhHHHHHhcCcchhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHH
Confidence 44556688999999999999999999999887 689999999876542 222 34666565665543 334455
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH---hcCChhHHHHHHHHHHhCCCchhHHHHHHHH
Q 004187 388 YVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE--PAYILEYADFLS---RLNDDRNIRALFERALSSLPPEESIEVWKRF 462 (770)
Q Consensus 388 yi~~a~le~~~~g~~~~A~~ife~alk~~p~~--~~~~l~ya~~l~---~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~ 462 (770)
|+.....+.. ++.|....-++++++-++ +-.|+.++--+. ..++-+.++.++.+.-+..| +....|.+-
T Consensus 2892 ~iakvLwLls----~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yP--Qal~f~lRt 2965 (3550)
T KOG0889|consen 2892 LIAKVLWLLS----FDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYP--QALYFPLRT 2965 (3550)
T ss_pred HHHHHHHHHH----hccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHHHHHhch--HHHHHHHHH
Confidence 6555443322 333444555566665443 346777775544 34667788899999888888 555555444
Q ss_pred H
Q 004187 463 T 463 (770)
Q Consensus 463 ~ 463 (770)
+
T Consensus 2966 a 2966 (3550)
T KOG0889|consen 2966 A 2966 (3550)
T ss_pred H
Confidence 3
No 441
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.37 E-value=4.1e+02 Score=28.91 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=7.5
Q ss_pred HHHHHHHHcCCCH
Q 004187 270 TYEQCLMYLYHYP 282 (770)
Q Consensus 270 ~ye~aL~~~p~~~ 282 (770)
.|+|+++..|.+.
T Consensus 43 ~y~Q~~q~~kk~~ 55 (449)
T COG3014 43 AYEQSKQFTKKKK 55 (449)
T ss_pred HHHHHHHhhhhhh
Confidence 5666666555543
No 442
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=28.26 E-value=3.4e+02 Score=22.91 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=20.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 294 KSGSIDAAIKVFQRALKALPDSEMLRYAFAEL 325 (770)
Q Consensus 294 ~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~ 325 (770)
..++.++|+.+++++++..++...-|..++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l 49 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYL 49 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 44566677777777777777666655554433
No 443
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.97 E-value=4.8e+02 Score=28.25 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 420 PAYILEYADFLSRLNDDRNIRALFERALSSL-PPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 420 ~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~-p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.+.|+..+.|+.+.||.++|.+.+.+..+.. .-....++....+++-.-++|-.-+.+....+...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE 172 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIE 172 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 3567777777777777777766665555421 0013355555555555556666666666666665555
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.57 E-value=8.8e+02 Score=26.89 Aligned_cols=59 Identities=22% Similarity=0.117 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHH--HHHhCcHHHHHHHHHHHhcc
Q 004187 287 DYATWNAKSGSIDAAIKVFQRALKALPDSEM--LRYAFAEL--EESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 287 ~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~--lw~~~a~~--~~~~g~~e~A~~iye~al~~ 345 (770)
..+.-+...+++..|.++|+..+...|.+.. .+..++.. +...-++.+|.+.+++++..
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444556788999999999999987676655 22222222 33567889999999988775
No 445
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.70 E-value=1.1e+02 Score=34.23 Aligned_cols=70 Identities=11% Similarity=0.018 Sum_probs=36.1
Q ss_pred cCCHHHHHHHhhCCCCCCCCCCHHHHHHHHhhCCCCCCCcCCCCCCCCCCCC--------------CCCCCcCCCCCCCC
Q 004187 626 AASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGKSPTTYPTPIP--------------TGAARSASGISGSN 691 (770)
Q Consensus 626 ~~p~~~~~~~~~~~~~~gp~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 691 (770)
++|+++-.||++--.+-=--...|-+-=.|.+.+|+....--..-+.+.... ..++|+||-++.|-
T Consensus 105 htp~pve~llsrkkqimmehssldhiqfklieielaak~~kaeaaa~aaaa~eqkdekaeevenret~p~psts~~~ssl 184 (900)
T KOG4425|consen 105 HTPGPVEPLLSRKKQIMMEHSSLDHIQFKLIEIELAAKPPKAEAAAGAAAAAEQKDEKAEEVENRETLPAPSTSALFSSL 184 (900)
T ss_pred CCCCchHHHHhhhhhhhhccccchhhhhheeeeecCCCCCcccccccccccccccchhhhhhhcccCCCCCchhhhhhhc
Confidence 7788887777765433222234454444566667766311100000011111 16788888888876
Q ss_pred CCCC
Q 004187 692 KSHP 695 (770)
Q Consensus 692 ~~~~ 695 (770)
.|+.
T Consensus 185 ~sp~ 188 (900)
T KOG4425|consen 185 FSPL 188 (900)
T ss_pred cCCC
Confidence 6643
No 446
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=25.56 E-value=84 Score=26.09 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHh
Q 004187 400 KDPKLAHNVFEAGLKR 415 (770)
Q Consensus 400 g~~~~A~~ife~alk~ 415 (770)
|++++|..+|..++..
T Consensus 20 g~y~eA~~lY~~ale~ 35 (75)
T cd02684 20 GDAAAALSLYCSALQY 35 (75)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 6677777777666653
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.00 E-value=4e+02 Score=27.48 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 004187 299 DAAIKVFQRALKALPDS------EMLRYAFAELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 299 e~A~~v~erAi~~~P~s------~~lw~~~a~~~~~~g~~e~A~~iye~al~~ 345 (770)
...++++++|+..+... ..+-..+|..+...|++++|.++|+.+...
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34566666666654322 234456777788888888888888887543
No 448
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=23.89 E-value=39 Score=33.92 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.7
Q ss_pred cCCCCCCccccCCCCCCCCCCCCC
Q 004187 568 IYPDTSQMVIYDPRQKPGIGISPS 591 (770)
Q Consensus 568 ~~p~~~~~~~~~p~~~~~~~~~~~ 591 (770)
..||++|++|+|.|.+..||.-|.
T Consensus 261 a~PDF~~~lp~KsrL~tL~G~iP~ 284 (330)
T COG4170 261 AIPDFGSALPHKSRLNTLPGAIPL 284 (330)
T ss_pred hCccccccCcchhhhccCCCcCch
Confidence 489999999999999998887554
No 449
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=23.34 E-value=1.4e+02 Score=27.77 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHhcCC-----ChhhHHHHHHHHHHhCCCcHHHHHHHHH
Q 004187 18 ADKYNVETAEILANSALHL-----PVAQAAPIYEQLLSVFPTAAKFWKQYVE 64 (770)
Q Consensus 18 ~~P~d~~aw~~l~~~~~~~-----~i~~Ar~~ye~~l~~fP~~~~~W~~yi~ 64 (770)
++....+-+..-+|.++.. +.+.|.++|+.++..||+...+...+|+
T Consensus 67 k~ktk~DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 67 KDKTKWDEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQ 118 (139)
T ss_dssp -----HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHH
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.25 E-value=8.6e+02 Score=25.32 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHH
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYF 374 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f 374 (770)
.+.++..++..+.+.+++..|+.-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3455555555555555555554433
No 451
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=22.58 E-value=4.8e+02 Score=26.75 Aligned_cols=69 Identities=13% Similarity=0.054 Sum_probs=57.0
Q ss_pred HHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC----hHHHHHHHHHH
Q 004187 31 NSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ----VPLWRCYIRFI 99 (770)
Q Consensus 31 ~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~----~~lW~~y~~~~ 99 (770)
+.++...+.++..+.+.-++-.|++...-..|++++.-.|++++|..-++-|-.+.|+ ..++...+.-+
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 3445567999999999999999999999999999999999999999999999888874 34555444443
No 452
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=22.51 E-value=4e+02 Score=29.58 Aligned_cols=84 Identities=21% Similarity=0.160 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHcCC--------------
Q 004187 239 QQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYL-------YHYPDIWYDYATWNAKSGS-------------- 297 (770)
Q Consensus 239 ~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~-------p~~~~~w~~~a~~l~~~g~-------------- 297 (770)
+...+|+.|+.-++.+. ....-++.-++|.|+.. .....++.-||..+...+.
T Consensus 53 QL~gLw~ty~~S~rd~e------llLnGiIHECDRLLR~~e~~~~~~~Lp~~FhaIYalALsELa~f~~~~~~~~~~~~v 126 (404)
T PF12753_consen 53 QLKGLWKTYFESDRDNE------LLLNGIIHECDRLLRNSEEEEKKKELPDRFHAIYALALSELAIFKAEEEEEKKREKV 126 (404)
T ss_dssp HHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHSS-GG---GS-HHHHHHHHHHHHHHHHTHHHHGGGS-TT--
T ss_pred HHHHHHHHHHhcccccc------hhhccchHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHhhcchhhhhhhhhH
Confidence 34568999998777664 24445566677777753 2455677777777765431
Q ss_pred ---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004187 298 ---IDAAIKVFQRALKALPDSEMLRYAFAELEES 328 (770)
Q Consensus 298 ---~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~ 328 (770)
++.|++-++-+++.+|++..+.+..+.+..+
T Consensus 127 ~efFdaAlER~e~Gl~~~p~s~~L~l~~skIll~ 160 (404)
T PF12753_consen 127 SEFFDAALERVELGLEKFPDSILLLLAKSKILLQ 160 (404)
T ss_dssp HHHHHHHHHHHHHGGSSS--H-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHH
Confidence 4455566666666789998887777666553
No 453
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=22.10 E-value=1.3e+03 Score=27.02 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhcCCCC--CChhhHHHHHHHHhh
Q 004187 112 EETRKAFDFMLSHVGSDI--SSGPIWLEYITFLKS 144 (770)
Q Consensus 112 e~ar~~~e~aL~~ig~dp--~s~~lW~~yi~fl~~ 144 (770)
..+...|.-.++.+..-+ ....+|..++-|+..
T Consensus 111 ~~~~~~y~~w~~rm~~~~~~~~~~V~LE~al~ll~ 145 (547)
T PF14929_consen 111 KRIGVIYDVWMERMKTPTFEEKLAVSLEHALFLLS 145 (547)
T ss_pred hhhhhhhHHHHHhhcccchhhhhHHHHHHHHHHHh
Confidence 345566665555543211 122377777777664
No 454
>KOG3779 consensus Homeobox transcription factor prospero [Transcription]
Probab=21.93 E-value=2e+02 Score=32.02 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=12.5
Q ss_pred CCccccccCCCCccccCCCC
Q 004187 596 GASSALNALSNPMVATGGGG 615 (770)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~ 615 (770)
+.||.-||+.+|+-+.+||+
T Consensus 456 ~P~~~~~~m~~~~~~~~GG~ 475 (737)
T KOG3779|consen 456 APGGHHQPLHQSPLSATGGF 475 (737)
T ss_pred CCCCCCccCCCCCCcccCCC
Confidence 33566677777766666555
No 455
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.67 E-value=1.2e+03 Score=26.26 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=74.4
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhccCCCC--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-----CCCCHHH
Q 004187 321 AFAELEESRGAIAAAKKLYESLLTDSVNT--------TALAHIQFIRFLRRTEGVEAARKYFLDARKS-----PNFTYHV 387 (770)
Q Consensus 321 ~~a~~~~~~g~~e~A~~iye~al~~~p~~--------~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~-----~~~~~~~ 387 (770)
....++...+++.+|.++-+..+...... ....|+.+...+...++...-+..+...+.. +.....+
T Consensus 131 Lv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qav 210 (493)
T KOG2581|consen 131 LVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAV 210 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHH
Confidence 33445555667777766665554322110 2456777766677778777777777655532 3334556
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHH----HHhcCChhHHHHHHHHHHhCCCc
Q 004187 388 YVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP--AYILEYADF----LSRLNDDRNIRALFERALSSLPP 452 (770)
Q Consensus 388 yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~--~~~l~ya~~----l~~~g~~~~Ar~lferaL~~~p~ 452 (770)
.+++..=.|-.++-++.|.+...+.. +|+.. .-|-.|.-| -.-+.+++.|...|-.|+..-|.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 66653322222355666655443332 44422 234444333 34467999999999999998883
No 456
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.95 E-value=3.9e+02 Score=23.68 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=26.7
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 004187 396 FCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN 434 (770)
Q Consensus 396 ~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g 434 (770)
|...|+.+.|..-|+.--..||.+.. |++|+++.+
T Consensus 82 ys~~G~~e~a~~eFetEKalFPES~~----fmDFLmk~~ 116 (121)
T COG4259 82 YSNSGKDEQAVREFETEKALFPESGV----FMDFLMKNG 116 (121)
T ss_pred HhhcCChHHHHHHHHHhhhhCccchh----HHHHHHHcc
Confidence 44469999999999988888998764 457776654
Done!