Query 004187
Match_columns 770
No_of_seqs 325 out of 2440
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 17:03:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 7.8E-64 2.7E-68 587.7 53.9 505 9-525 54-601 (679)
2 2ooe_A Cleavage stimulation fa 100.0 9.7E-60 3.3E-64 543.8 58.7 509 10-527 2-528 (530)
3 2uy1_A Cleavage stimulation fa 100.0 2.8E-52 9.5E-57 476.4 45.6 446 37-535 10-481 (493)
4 2ond_A Cleavage stimulation fa 100.0 5.1E-33 1.7E-37 297.7 35.4 285 237-527 4-306 (308)
5 4e6h_A MRNA 3'-END-processing 100.0 8.4E-32 2.9E-36 316.1 41.0 420 38-487 48-535 (679)
6 2ooe_A Cleavage stimulation fa 100.0 1.1E-29 3.6E-34 292.7 38.2 404 44-487 1-456 (530)
7 1w3b_A UDP-N-acetylglucosamine 100.0 4.4E-26 1.5E-30 250.5 44.4 377 32-470 9-387 (388)
8 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-25 7.1E-30 245.1 46.0 364 62-487 5-370 (388)
9 2xpi_A Anaphase-promoting comp 99.9 1.1E-24 3.9E-29 252.7 42.3 419 21-487 82-581 (597)
10 2xpi_A Anaphase-promoting comp 99.9 1.4E-23 4.8E-28 243.5 46.6 389 54-487 82-547 (597)
11 2uy1_A Cleavage stimulation fa 99.9 2.7E-25 9.1E-30 253.5 25.7 402 26-479 18-446 (493)
12 2y4t_A DNAJ homolog subfamily 99.9 4.8E-23 1.7E-27 230.0 42.1 339 7-464 12-371 (450)
13 3fp2_A TPR repeat-containing p 99.9 7.4E-23 2.5E-27 233.7 42.0 421 22-487 24-493 (537)
14 2gw1_A Mitochondrial precursor 99.9 4.6E-22 1.6E-26 225.3 41.0 432 22-487 5-480 (514)
15 3ieg_A DNAJ homolog subfamily 99.9 1.8E-21 6E-26 209.0 42.5 329 22-467 2-351 (359)
16 2gw1_A Mitochondrial precursor 99.9 3.6E-21 1.2E-25 218.0 35.7 395 10-462 29-489 (514)
17 3fp2_A TPR repeat-containing p 99.9 1.7E-20 6E-25 214.0 41.0 394 9-451 47-493 (537)
18 2y4t_A DNAJ homolog subfamily 99.9 6.9E-20 2.3E-24 204.4 39.1 335 38-487 8-360 (450)
19 3ieg_A DNAJ homolog subfamily 99.9 5.3E-19 1.8E-23 189.5 40.8 318 55-487 2-337 (359)
20 3hym_B Cell division cycle pro 99.9 1.3E-19 4.3E-24 192.5 32.6 300 46-473 12-322 (330)
21 3hym_B Cell division cycle pro 99.9 2E-19 6.7E-24 191.0 30.8 302 7-436 8-321 (330)
22 2ond_A Cleavage stimulation fa 99.9 2.5E-20 8.4E-25 199.0 22.0 186 265-452 81-273 (308)
23 4g1t_A Interferon-induced prot 99.8 1.6E-17 5.5E-22 186.7 35.3 210 265-487 230-461 (472)
24 1fch_A Peroxisomal targeting s 99.8 1.7E-18 5.7E-23 187.5 24.4 301 37-450 40-360 (368)
25 2pl2_A Hypothetical conserved 99.8 2E-18 6.9E-23 174.6 22.5 199 279-482 2-211 (217)
26 1fch_A Peroxisomal targeting s 99.8 2.7E-18 9.2E-23 185.9 25.0 221 265-487 115-361 (368)
27 4eqf_A PEX5-related protein; a 99.8 4.2E-18 1.4E-22 184.9 23.8 222 263-488 80-313 (365)
28 4eqf_A PEX5-related protein; a 99.8 3.8E-18 1.3E-22 185.2 23.3 223 264-487 115-358 (365)
29 2pl2_A Hypothetical conserved 99.8 1.3E-17 4.5E-22 168.5 22.1 183 263-448 20-213 (217)
30 2h6f_A Protein farnesyltransfe 99.8 7.4E-17 2.5E-21 177.6 27.2 221 263-487 112-350 (382)
31 4g1t_A Interferon-induced prot 99.7 7.3E-16 2.5E-20 173.1 32.4 178 263-451 262-461 (472)
32 3vtx_A MAMA; tetratricopeptide 99.7 1.5E-16 5.2E-21 155.1 23.3 171 279-451 2-172 (184)
33 3cv0_A Peroxisome targeting si 99.7 1.1E-16 3.9E-21 169.4 24.2 221 263-487 70-317 (327)
34 3cv0_A Peroxisome targeting si 99.7 1.8E-16 6.3E-21 167.8 25.1 221 263-487 36-271 (327)
35 2q7f_A YRRB protein; TPR, prot 99.7 9.5E-17 3.2E-21 162.7 21.9 202 264-469 39-240 (243)
36 3u4t_A TPR repeat-containing p 99.7 1.6E-16 5.5E-21 164.3 24.1 222 263-487 18-252 (272)
37 2ho1_A Type 4 fimbrial biogene 99.7 6.2E-16 2.1E-20 158.1 26.9 206 278-487 32-240 (252)
38 2vq2_A PILW, putative fimbrial 99.7 6.8E-16 2.3E-20 154.0 26.1 207 278-487 4-213 (225)
39 3uq3_A Heat shock protein STI1 99.7 1.9E-15 6.5E-20 154.1 27.4 212 263-487 20-238 (258)
40 2h6f_A Protein farnesyltransfe 99.7 1.1E-16 3.8E-21 176.2 19.1 205 274-482 89-302 (382)
41 2q7f_A YRRB protein; TPR, prot 99.7 4.6E-16 1.6E-20 157.6 21.0 203 281-487 22-224 (243)
42 2ho1_A Type 4 fimbrial biogene 99.7 2.5E-15 8.6E-20 153.6 26.1 186 264-451 53-240 (252)
43 4abn_A Tetratricopeptide repea 99.7 6.7E-16 2.3E-20 175.2 20.9 209 265-478 85-314 (474)
44 2vq2_A PILW, putative fimbrial 99.7 1.3E-14 4.3E-19 144.7 26.3 187 263-451 23-213 (225)
45 2xm6_A Protein corresponding t 99.7 1.6E-12 5.5E-17 147.5 46.6 365 19-486 35-433 (490)
46 4gyw_A UDP-N-acetylglucosamine 99.7 1.8E-15 6.1E-20 179.5 21.9 173 277-451 4-176 (723)
47 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.2E-14 4.2E-19 150.0 23.4 223 261-487 18-246 (275)
48 4i17_A Hypothetical protein; T 99.6 8.6E-15 2.9E-19 148.0 21.7 198 279-487 4-211 (228)
49 3mkr_A Coatomer subunit epsilo 99.6 5.4E-14 1.8E-18 148.9 28.7 187 263-458 80-271 (291)
50 3vtx_A MAMA; tetratricopeptide 99.6 3.9E-14 1.3E-18 137.9 22.6 171 313-487 2-172 (184)
51 3u4t_A TPR repeat-containing p 99.6 1.6E-14 5.4E-19 149.3 19.9 204 281-487 2-210 (272)
52 4abn_A Tetratricopeptide repea 99.6 4.9E-14 1.7E-18 159.8 25.2 180 263-445 117-317 (474)
53 3uq3_A Heat shock protein STI1 99.6 6.3E-14 2.1E-18 142.8 22.6 188 263-462 53-253 (258)
54 2xm6_A Protein corresponding t 99.6 7.6E-12 2.6E-16 142.0 41.9 333 20-450 72-433 (490)
55 3mkr_A Coatomer subunit epsilo 99.6 1.4E-13 4.8E-18 145.7 23.2 201 278-487 61-266 (291)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.3E-13 1.1E-17 139.1 24.8 185 263-451 58-246 (275)
57 3as5_A MAMA; tetratricopeptide 99.6 8.4E-14 2.9E-18 133.9 18.7 168 282-451 8-175 (186)
58 4gyw_A UDP-N-acetylglucosamine 99.5 9.1E-14 3.1E-18 164.8 20.4 175 310-488 3-177 (723)
59 3sf4_A G-protein-signaling mod 99.5 3.8E-13 1.3E-17 146.7 23.7 313 21-436 7-363 (406)
60 1ouv_A Conserved hypothetical 99.5 3.4E-12 1.2E-16 132.5 29.6 210 263-487 21-253 (273)
61 3qky_A Outer membrane assembly 99.5 1.9E-13 6.5E-18 141.3 19.8 176 275-451 8-226 (261)
62 4i17_A Hypothetical protein; T 99.5 3.8E-13 1.3E-17 135.8 21.2 193 263-466 22-224 (228)
63 3nf1_A KLC 1, kinesin light ch 99.5 3.4E-13 1.2E-17 141.4 18.6 208 278-487 23-309 (311)
64 2pzi_A Probable serine/threoni 99.5 1.5E-13 5.2E-18 162.8 16.8 187 277-471 389-583 (681)
65 4a1s_A PINS, partner of inscut 99.5 3.1E-13 1.1E-17 148.6 17.8 223 263-487 63-334 (411)
66 4a1s_A PINS, partner of inscut 99.5 8.3E-13 2.8E-17 145.1 20.6 224 263-487 101-374 (411)
67 4ga2_A E3 SUMO-protein ligase 99.5 5.2E-14 1.8E-18 133.5 9.4 145 289-435 4-149 (150)
68 1ouv_A Conserved hypothetical 99.5 1.3E-11 4.6E-16 128.0 28.2 196 278-487 2-217 (273)
69 3ro2_A PINS homolog, G-protein 99.5 9.9E-13 3.4E-17 138.5 19.7 224 263-487 58-334 (338)
70 3urz_A Uncharacterized protein 99.5 1.4E-12 4.8E-17 130.5 19.5 171 281-453 3-190 (208)
71 3qou_A Protein YBBN; thioredox 99.5 2E-12 6.9E-17 136.3 20.7 171 276-448 111-283 (287)
72 2pzi_A Probable serine/threoni 99.5 2.6E-13 8.8E-18 160.9 15.1 171 262-435 405-583 (681)
73 3dra_A Protein farnesyltransfe 99.5 5.9E-12 2E-16 133.7 24.1 223 263-487 48-290 (306)
74 3as5_A MAMA; tetratricopeptide 99.5 4.6E-12 1.6E-16 121.5 20.6 168 316-487 8-175 (186)
75 3ro2_A PINS homolog, G-protein 99.5 8.3E-13 2.8E-17 139.1 16.4 224 263-487 20-294 (338)
76 3sf4_A G-protein-signaling mod 99.4 1.2E-12 4.2E-17 142.6 17.6 224 263-487 24-298 (406)
77 2r5s_A Uncharacterized protein 99.4 9.7E-13 3.3E-17 127.7 14.1 167 279-448 3-172 (176)
78 2yhc_A BAMD, UPF0169 lipoprote 99.4 8.6E-12 2.9E-16 126.2 21.2 190 281-487 3-215 (225)
79 3edt_B KLC 2, kinesin light ch 99.4 1.3E-12 4.6E-17 134.4 15.2 217 266-486 19-282 (283)
80 3nf1_A KLC 1, kinesin light ch 99.4 1.7E-12 5.8E-17 136.0 14.6 188 263-451 42-309 (311)
81 3urz_A Uncharacterized protein 99.4 4.6E-12 1.6E-16 126.7 16.4 154 263-419 19-190 (208)
82 4ga2_A E3 SUMO-protein ligase 99.4 1.4E-12 4.6E-17 123.6 11.6 146 322-471 3-149 (150)
83 2r5s_A Uncharacterized protein 99.4 2.6E-12 9E-17 124.6 13.4 172 312-485 2-173 (176)
84 3e4b_A ALGK; tetratricopeptide 99.4 2E-10 6.7E-15 129.2 29.1 353 29-451 9-389 (452)
85 2vsy_A XCC0866; transferase, g 99.4 1.4E-11 4.7E-16 142.6 19.4 154 265-420 6-162 (568)
86 3qou_A Protein YBBN; thioredox 99.4 2.5E-11 8.4E-16 128.0 19.7 173 311-485 112-284 (287)
87 3edt_B KLC 2, kinesin light ch 99.4 6.2E-12 2.1E-16 129.4 14.7 154 294-449 13-198 (283)
88 3qky_A Outer membrane assembly 99.4 2.9E-11 9.9E-16 124.8 19.7 177 309-487 8-226 (261)
89 1xi4_A Clathrin heavy chain; a 99.3 2.9E-09 9.8E-14 129.6 37.9 177 284-470 1223-1415(1630)
90 1qqe_A Vesicular transport pro 99.3 1.8E-11 6.1E-16 129.2 16.3 196 263-461 52-279 (292)
91 2vsy_A XCC0866; transferase, g 99.3 2.8E-11 9.4E-16 140.1 19.4 155 295-451 2-159 (568)
92 2fo7_A Synthetic consensus TPR 99.3 9.2E-11 3.2E-15 105.7 18.6 134 283-418 2-135 (136)
93 3q7a_A Farnesyltransferase alp 99.3 7.6E-10 2.6E-14 118.9 28.2 221 264-486 70-332 (349)
94 1xi4_A Clathrin heavy chain; a 99.3 1.8E-08 6.2E-13 122.7 42.9 316 63-477 1056-1376(1630)
95 3ulq_A Response regulator aspa 99.3 5.3E-11 1.8E-15 130.1 19.3 222 263-488 118-371 (383)
96 3dss_A Geranylgeranyl transfer 99.3 4.1E-10 1.4E-14 120.4 25.5 221 264-487 46-306 (331)
97 3e4b_A ALGK; tetratricopeptide 99.3 6.8E-10 2.3E-14 124.8 28.4 360 60-487 7-389 (452)
98 3ulq_A Response regulator aspa 99.3 1.5E-09 5.1E-14 118.5 29.9 184 263-449 158-368 (383)
99 1qqe_A Vesicular transport pro 99.3 4E-11 1.4E-15 126.5 16.7 173 264-451 33-230 (292)
100 4h7y_A Dual specificity protei 99.3 2.7E-11 9.1E-16 111.2 13.1 110 276-387 7-130 (161)
101 4gco_A Protein STI-1; structur 99.3 2.9E-11 9.8E-16 110.9 13.5 117 276-393 7-123 (126)
102 3gyz_A Chaperone protein IPGC; 99.3 1.3E-11 4.4E-16 117.3 9.4 113 270-383 24-136 (151)
103 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.2E-10 1.1E-14 114.5 19.7 157 315-488 3-179 (225)
104 2fo7_A Synthetic consensus TPR 99.2 3.3E-10 1.1E-14 102.0 17.9 133 317-451 2-134 (136)
105 4gco_A Protein STI-1; structur 99.2 7.1E-11 2.4E-15 108.3 13.1 121 307-429 4-124 (126)
106 3q15_A PSP28, response regulat 99.2 5E-10 1.7E-14 122.3 20.8 221 263-487 116-367 (378)
107 2c2l_A CHIP, carboxy terminus 99.2 7.1E-11 2.4E-15 124.1 13.3 189 279-481 1-195 (281)
108 4f3v_A ESX-1 secretion system 99.2 3.7E-11 1.3E-15 125.2 10.6 195 263-463 21-248 (282)
109 3gyz_A Chaperone protein IPGC; 99.2 9.3E-11 3.2E-15 111.3 11.8 114 336-451 22-135 (151)
110 3dra_A Protein farnesyltransfe 99.2 1.2E-09 4.1E-14 115.9 21.5 198 263-463 84-300 (306)
111 1p5q_A FKBP52, FK506-binding p 99.2 9.3E-11 3.2E-15 126.6 12.4 148 265-448 130-293 (336)
112 2vgx_A Chaperone SYCD; alterna 99.2 1.3E-10 4.6E-15 109.6 11.8 112 270-382 9-120 (148)
113 3rjv_A Putative SEL1 repeat pr 99.2 1.4E-09 4.6E-14 109.1 19.9 174 268-450 6-198 (212)
114 1p5q_A FKBP52, FK506-binding p 99.1 5E-11 1.7E-15 128.7 9.0 170 295-487 126-296 (336)
115 2vgx_A Chaperone SYCD; alterna 99.1 7.9E-11 2.7E-15 111.2 8.9 118 303-422 8-125 (148)
116 2xcb_A PCRH, regulatory protei 99.1 1.1E-10 3.7E-15 109.0 9.2 112 270-382 6-117 (142)
117 3q15_A PSP28, response regulat 99.1 2.6E-08 9E-13 108.5 29.6 184 263-449 156-365 (378)
118 1a17_A Serine/threonine protei 99.1 1.5E-09 5.1E-14 102.4 16.9 131 282-414 13-145 (166)
119 1hz4_A MALT regulatory protein 99.1 1.7E-08 5.9E-13 109.3 27.2 224 263-487 68-324 (373)
120 2xcb_A PCRH, regulatory protei 99.1 1.4E-10 4.8E-15 108.2 9.0 119 303-423 5-123 (142)
121 1hz4_A MALT regulatory protein 99.1 6.1E-09 2.1E-13 112.9 23.2 224 263-487 29-284 (373)
122 1dce_A Protein (RAB geranylger 99.1 1.6E-09 5.5E-14 125.1 19.3 175 263-438 44-244 (567)
123 2e2e_A Formate-dependent nitri 99.1 4.7E-10 1.6E-14 108.2 12.5 122 262-384 24-148 (177)
124 2e2e_A Formate-dependent nitri 99.1 9.7E-10 3.3E-14 106.0 13.9 129 293-423 21-152 (177)
125 3upv_A Heat shock protein STI1 99.1 1.5E-09 5E-14 98.5 14.0 100 281-381 3-102 (126)
126 1a17_A Serine/threonine protei 99.1 3.7E-09 1.3E-13 99.7 16.9 130 317-448 14-145 (166)
127 2ifu_A Gamma-SNAP; membrane fu 99.1 2.9E-09 9.8E-14 113.0 17.4 165 284-451 38-225 (307)
128 2vyi_A SGTA protein; chaperone 99.0 2.3E-09 7.7E-14 96.2 14.0 117 279-396 9-125 (131)
129 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.1E-09 1.1E-13 105.2 16.3 126 322-452 12-153 (213)
130 2lni_A Stress-induced-phosphop 99.0 1.6E-09 5.5E-14 98.0 13.0 116 279-395 13-128 (133)
131 3q7a_A Farnesyltransferase alp 99.0 1.1E-08 3.6E-13 109.9 21.1 185 283-471 55-257 (349)
132 3sz7_A HSC70 cochaperone (SGT) 99.0 1.9E-09 6.3E-14 102.8 13.0 112 280-392 9-120 (164)
133 2vyi_A SGTA protein; chaperone 99.0 3.3E-09 1.1E-13 95.2 14.0 122 313-436 9-130 (131)
134 2lni_A Stress-induced-phosphop 99.0 3.4E-09 1.2E-13 95.8 14.1 119 313-433 13-131 (133)
135 1hh8_A P67PHOX, NCF-2, neutrop 99.0 9.5E-09 3.3E-13 101.7 18.5 131 284-419 8-154 (213)
136 1elw_A TPR1-domain of HOP; HOP 99.0 1.1E-08 3.7E-13 90.0 16.9 112 282-394 4-115 (118)
137 3upv_A Heat shock protein STI1 99.0 5E-09 1.7E-13 94.9 14.7 113 315-429 3-121 (126)
138 2qfc_A PLCR protein; TPR, HTH, 99.0 1.7E-08 5.8E-13 106.0 20.8 171 278-449 71-266 (293)
139 1na0_A Designed protein CTPR3; 99.0 1.2E-08 4.2E-13 90.5 16.5 112 282-394 9-120 (125)
140 1hxi_A PEX5, peroxisome target 99.0 3.5E-09 1.2E-13 96.1 13.1 100 283-383 18-117 (121)
141 4f3v_A ESX-1 secretion system 99.0 9.7E-09 3.3E-13 106.9 17.9 192 294-487 18-239 (282)
142 2fbn_A 70 kDa peptidylprolyl i 99.0 6.1E-10 2.1E-14 109.8 8.3 124 315-439 37-175 (198)
143 1b89_A Protein (clathrin heavy 99.0 1.3E-09 4.4E-14 119.9 11.1 187 263-467 137-339 (449)
144 1na0_A Designed protein CTPR3; 99.0 1.8E-08 6.2E-13 89.4 16.2 116 316-433 9-124 (125)
145 3dss_A Geranylgeranyl transfer 99.0 1.4E-07 4.8E-12 100.7 25.8 195 264-461 90-314 (331)
146 3mv2_B Coatomer subunit epsilo 99.0 1.7E-08 5.7E-13 106.5 18.3 182 269-458 87-289 (310)
147 3q49_B STIP1 homology and U bo 99.0 8.8E-09 3E-13 94.2 14.1 104 277-381 4-107 (137)
148 2dba_A Smooth muscle cell asso 98.9 1.4E-08 4.6E-13 93.7 15.1 116 278-394 24-142 (148)
149 2c2l_A CHIP, carboxy terminus 98.9 1.5E-09 5.3E-14 113.8 9.0 176 263-449 19-199 (281)
150 3rjv_A Putative SEL1 repeat pr 98.9 5.1E-08 1.7E-12 97.5 19.7 178 299-487 3-199 (212)
151 3u3w_A Transcriptional activat 98.9 2.2E-08 7.4E-13 105.2 17.4 162 287-449 80-266 (293)
152 3sz7_A HSC70 cochaperone (SGT) 98.9 1E-08 3.5E-13 97.6 13.4 100 351-451 11-110 (164)
153 1b89_A Protein (clathrin heavy 98.9 5.1E-09 1.7E-13 115.2 12.5 318 36-447 17-353 (449)
154 2ifu_A Gamma-SNAP; membrane fu 98.9 3.7E-09 1.3E-13 112.2 11.1 200 262-487 5-225 (307)
155 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 3.6E-09 1.2E-13 119.1 11.4 129 265-394 251-394 (457)
156 1elw_A TPR1-domain of HOP; HOP 98.9 3.6E-08 1.2E-12 86.6 15.5 110 317-428 5-114 (118)
157 2dba_A Smooth muscle cell asso 98.9 3.2E-08 1.1E-12 91.1 15.9 118 312-431 24-144 (148)
158 1dce_A Protein (RAB geranylger 98.9 2.8E-08 9.5E-13 114.8 18.8 173 294-470 40-240 (567)
159 2fbn_A 70 kDa peptidylprolyl i 98.9 2.4E-09 8.3E-14 105.5 8.5 127 278-406 34-176 (198)
160 3q49_B STIP1 homology and U bo 98.9 1.6E-08 5.6E-13 92.4 13.2 106 311-418 4-109 (137)
161 2if4_A ATFKBP42; FKBP-like, al 98.9 1.7E-09 5.9E-14 116.7 7.6 155 278-451 175-330 (338)
162 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 1.2E-09 4.1E-14 123.0 5.9 169 295-486 247-416 (457)
163 4gcn_A Protein STI-1; structur 98.9 3.4E-08 1.2E-12 90.3 14.4 101 282-382 8-114 (127)
164 4h7y_A Dual specificity protei 98.9 1.7E-08 5.7E-13 92.8 11.8 112 311-451 8-125 (161)
165 2kck_A TPR repeat; tetratricop 98.8 1.5E-08 5.2E-13 88.3 11.1 106 278-383 2-109 (112)
166 2xev_A YBGF; tetratricopeptide 98.8 4.8E-08 1.6E-12 88.2 13.7 105 283-388 3-113 (129)
167 3gw4_A Uncharacterized protein 98.8 2.9E-08 9.8E-13 97.0 13.1 155 293-449 3-176 (203)
168 2qfc_A PLCR protein; TPR, HTH, 98.8 3.8E-07 1.3E-11 95.6 22.6 187 317-507 76-285 (293)
169 1elr_A TPR2A-domain of HOP; HO 98.8 4.4E-08 1.5E-12 87.8 13.2 110 281-392 3-119 (131)
170 3rkv_A Putative peptidylprolyl 98.8 1.2E-08 4.2E-13 96.8 9.7 103 282-385 11-131 (162)
171 1hxi_A PEX5, peroxisome target 98.8 2.6E-08 8.8E-13 90.3 10.9 97 354-451 20-116 (121)
172 3mv2_B Coatomer subunit epsilo 98.8 2.2E-07 7.5E-12 97.9 18.3 182 301-487 85-284 (310)
173 1elr_A TPR2A-domain of HOP; HO 98.7 6.7E-08 2.3E-12 86.5 12.0 113 315-430 3-122 (131)
174 2kck_A TPR repeat; tetratricop 98.7 4.3E-08 1.5E-12 85.3 10.3 99 352-451 7-108 (112)
175 1wao_1 Serine/threonine protei 98.7 1.1E-08 3.7E-13 115.8 7.9 114 261-375 19-134 (477)
176 2xev_A YBGF; tetratricopeptide 98.7 2.5E-07 8.4E-12 83.4 15.2 107 319-427 5-117 (129)
177 2hr2_A Hypothetical protein; a 98.7 1.3E-07 4.5E-12 89.5 13.1 98 282-380 11-131 (159)
178 3rkv_A Putative peptidylprolyl 98.7 1.5E-07 5E-12 89.3 12.5 103 316-420 11-131 (162)
179 4b4t_Q 26S proteasome regulato 98.7 8.1E-07 2.8E-11 97.8 19.9 202 285-487 7-247 (434)
180 3u3w_A Transcriptional activat 98.7 2.1E-07 7.1E-12 97.7 14.3 153 263-416 90-267 (293)
181 3gw4_A Uncharacterized protein 98.6 2.1E-07 7.1E-12 90.8 13.3 138 278-416 21-177 (203)
182 1ihg_A Cyclophilin 40; ppiase 98.6 1.8E-07 6.3E-12 102.1 14.0 139 282-440 223-361 (370)
183 1zu2_A Mitochondrial import re 98.6 9.8E-08 3.4E-12 90.2 10.2 69 262-330 16-94 (158)
184 1wao_1 Serine/threonine protei 98.6 8.5E-08 2.9E-12 108.4 10.6 164 283-448 7-196 (477)
185 1zu2_A Mitochondrial import re 98.6 1.7E-07 5.7E-12 88.6 10.8 96 294-390 14-130 (158)
186 4gcn_A Protein STI-1; structur 98.6 4.3E-07 1.5E-11 82.8 13.2 98 353-451 10-114 (127)
187 3k9i_A BH0479 protein; putativ 98.6 8E-08 2.7E-12 86.0 8.0 85 264-348 6-93 (117)
188 1ihg_A Cyclophilin 40; ppiase 98.6 3.7E-07 1.3E-11 99.7 14.8 139 317-477 224-362 (370)
189 2if4_A ATFKBP42; FKBP-like, al 98.6 3E-08 1E-12 106.9 5.8 154 313-487 176-330 (338)
190 3ro3_A PINS homolog, G-protein 98.6 2.9E-07 9.8E-12 85.3 11.9 96 283-378 10-116 (164)
191 2kat_A Uncharacterized protein 98.6 5.3E-07 1.8E-11 80.0 12.5 82 267-348 4-85 (115)
192 2hr2_A Hypothetical protein; a 98.6 2.9E-07 9.9E-12 87.2 10.9 64 387-451 59-133 (159)
193 3k9i_A BH0479 protein; putativ 98.6 1.3E-07 4.6E-12 84.5 8.3 90 330-421 4-96 (117)
194 3ro3_A PINS homolog, G-protein 98.5 8.9E-07 3E-11 81.9 11.5 133 316-449 9-158 (164)
195 1na3_A Designed protein CTPR2; 98.5 1.3E-06 4.3E-11 73.3 11.2 84 280-364 7-90 (91)
196 2l6j_A TPR repeat-containing p 98.4 2.9E-07 1E-11 80.3 6.8 93 281-374 3-101 (111)
197 3ma5_A Tetratricopeptide repea 98.4 1.4E-06 4.8E-11 75.7 9.7 71 277-347 2-72 (100)
198 4b4t_Q 26S proteasome regulato 98.4 1.1E-05 3.8E-10 88.6 19.1 166 283-449 56-245 (434)
199 3u64_A Protein TP_0956; tetrat 98.3 4.6E-05 1.6E-09 78.6 20.8 175 268-451 52-271 (301)
200 2kat_A Uncharacterized protein 98.3 4E-06 1.4E-10 74.2 11.1 82 369-451 3-84 (115)
201 3u64_A Protein TP_0956; tetrat 98.2 0.00017 5.7E-09 74.4 21.8 109 240-348 153-272 (301)
202 4g26_A Pentatricopeptide repea 98.2 0.00018 6E-09 81.6 24.1 164 284-448 28-203 (501)
203 2kc7_A BFR218_protein; tetratr 98.1 7.6E-06 2.6E-10 70.0 8.6 85 286-379 4-89 (99)
204 1na3_A Designed protein CTPR2; 98.1 2E-05 6.8E-10 65.7 11.0 79 352-431 10-88 (91)
205 2l6j_A TPR repeat-containing p 98.1 2.7E-06 9.3E-11 74.0 5.1 86 352-438 5-96 (111)
206 4g26_A Pentatricopeptide repea 98.0 0.00039 1.3E-08 78.7 22.4 168 318-487 28-206 (501)
207 3ma5_A Tetratricopeptide repea 98.0 4.5E-05 1.6E-09 65.9 11.0 70 18-87 2-72 (100)
208 3ly7_A Transcriptional activat 97.9 0.00019 6.4E-09 77.0 17.1 146 272-420 184-344 (372)
209 3bee_A Putative YFRE protein; 97.9 4.9E-05 1.7E-09 65.2 10.2 71 278-348 2-75 (93)
210 3n71_A Histone lysine methyltr 97.9 3.6E-05 1.2E-09 86.9 11.0 95 353-448 353-463 (490)
211 1klx_A Cysteine rich protein B 97.8 0.00031 1.1E-08 64.7 14.5 88 322-414 31-125 (138)
212 1klx_A Cysteine rich protein B 97.8 0.00038 1.3E-08 64.1 14.7 111 263-382 10-128 (138)
213 2kc7_A BFR218_protein; tetratr 97.8 3E-05 1E-09 66.2 6.6 67 321-388 5-72 (99)
214 3n71_A Histone lysine methyltr 97.7 6.8E-05 2.3E-09 84.6 9.5 61 387-448 353-421 (490)
215 3esl_A Checkpoint serine/threo 97.6 0.0019 6.5E-08 62.7 16.2 120 241-363 30-162 (202)
216 1pc2_A Mitochondria fission pr 97.6 0.00049 1.7E-08 64.2 11.7 89 264-353 14-107 (152)
217 3ly7_A Transcriptional activat 97.6 0.00087 3E-08 71.8 15.2 157 305-465 183-354 (372)
218 3bee_A Putative YFRE protein; 97.6 0.00035 1.2E-08 59.8 9.5 76 18-94 1-80 (93)
219 4aez_C MAD3, mitotic spindle c 97.4 0.0044 1.5E-07 61.2 16.4 114 241-363 72-197 (223)
220 4a1g_A Mitotic checkpoint seri 97.4 0.0015 5E-08 60.8 11.8 112 241-364 26-149 (152)
221 3esl_A Checkpoint serine/threo 97.3 0.0045 1.5E-07 60.1 15.1 135 37-189 7-163 (202)
222 2wvi_A Mitotic checkpoint seri 97.2 0.0032 1.1E-07 59.3 12.7 114 241-364 19-144 (164)
223 4a1g_A Mitotic checkpoint seri 97.2 0.0015 5.1E-08 60.7 10.0 126 39-188 7-148 (152)
224 1pc2_A Mitochondria fission pr 97.2 0.0023 8E-08 59.6 11.0 90 298-387 14-107 (152)
225 4aez_C MAD3, mitotic spindle c 97.1 0.0029 9.7E-08 62.5 11.7 129 37-188 50-197 (223)
226 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0064 2.2E-07 52.7 11.1 77 281-358 4-87 (104)
227 3qww_A SET and MYND domain-con 96.9 0.0025 8.4E-08 70.6 9.5 62 353-415 342-411 (433)
228 2v5f_A Prolyl 4-hydroxylase su 96.8 0.01 3.5E-07 51.4 11.5 75 352-427 6-87 (104)
229 2wvi_A Mitotic checkpoint seri 96.8 0.012 4.1E-07 55.4 11.8 125 43-190 4-145 (164)
230 3qww_A SET and MYND domain-con 96.4 0.0057 1.9E-07 67.7 8.1 82 263-344 313-410 (433)
231 3qwp_A SET and MYND domain-con 96.3 0.01 3.6E-07 65.5 10.1 87 328-415 299-400 (429)
232 1nzn_A CGI-135 protein, fissio 96.0 0.049 1.7E-06 48.9 10.9 87 266-353 19-110 (126)
233 3qwp_A SET and MYND domain-con 95.8 0.025 8.5E-07 62.5 9.9 88 361-449 297-400 (429)
234 1nzn_A CGI-135 protein, fissio 95.0 0.18 6E-06 45.2 10.8 84 367-451 17-105 (126)
235 3ffl_A Anaphase-promoting comp 93.8 0.31 1.1E-05 45.7 9.8 97 263-361 35-165 (167)
236 3o48_A Mitochondria fission 1 93.1 0.83 2.8E-05 41.1 11.0 82 269-352 28-113 (134)
237 3spa_A Mtrpol, DNA-directed RN 91.8 3.3 0.00011 49.9 17.0 100 283-382 128-232 (1134)
238 1y8m_A FIS1; mitochondria, unk 91.7 2.2 7.5E-05 38.8 12.1 70 279-348 36-109 (144)
239 3mkq_B Coatomer subunit alpha; 91.5 4.6 0.00016 38.2 14.7 122 327-478 16-137 (177)
240 3txn_A 26S proteasome regulato 91.2 11 0.00036 40.7 19.2 168 282-451 19-212 (394)
241 3mkq_A Coatomer beta'-subunit; 90.7 4.1 0.00014 47.7 17.0 162 285-487 632-794 (814)
242 3o48_A Mitochondria fission 1 90.6 1.7 5.9E-05 39.0 10.2 83 369-452 25-110 (134)
243 4gns_B Protein CSD3, chitin bi 90.1 1.2 4.2E-05 52.1 11.3 53 392-445 344-396 (754)
244 1zbp_A Hypothetical protein VP 90.1 2.3 7.9E-05 43.1 11.8 58 291-348 6-63 (273)
245 1y8m_A FIS1; mitochondria, unk 89.9 1.3 4.3E-05 40.5 8.8 84 368-452 23-109 (144)
246 3mkq_B Coatomer subunit alpha; 89.9 7.7 0.00026 36.7 14.7 108 280-410 6-113 (177)
247 3txn_A 26S proteasome regulato 89.8 24 0.00082 37.9 22.8 190 296-487 73-286 (394)
248 3mkq_A Coatomer beta'-subunit; 89.4 3.1 0.00011 48.8 14.6 77 291-381 661-737 (814)
249 3spa_A Mtrpol, DNA-directed RN 89.2 3 0.0001 50.2 13.6 97 316-415 127-230 (1134)
250 4gns_B Protein CSD3, chitin bi 88.8 1.1 3.6E-05 52.7 9.4 61 282-342 337-397 (754)
251 3ffl_A Anaphase-promoting comp 88.6 2.1 7.2E-05 40.0 9.5 61 285-345 23-92 (167)
252 4b4t_S RPN3, 26S proteasome re 86.8 8.1 0.00028 42.9 14.4 192 289-487 143-372 (523)
253 2ff4_A Probable regulatory pro 86.7 5 0.00017 43.2 12.7 125 294-451 127-259 (388)
254 2ff4_A Probable regulatory pro 82.1 3.7 0.00013 44.2 9.2 54 288-341 177-230 (388)
255 1wy6_A Hypothetical protein ST 76.9 36 0.0012 30.8 11.8 117 292-415 17-154 (172)
256 4b4t_R RPN7, 26S proteasome re 76.6 4.8 0.00017 43.9 7.9 99 282-380 131-237 (429)
257 4b4t_R RPN7, 26S proteasome re 73.3 15 0.0005 40.0 10.7 102 316-418 131-240 (429)
258 4fhn_B Nucleoporin NUP120; pro 73.0 1.1E+02 0.0037 37.7 19.6 31 278-308 838-868 (1139)
259 1wy6_A Hypothetical protein ST 70.8 37 0.0013 30.7 10.5 83 260-346 73-155 (172)
260 1zbp_A Hypothetical protein VP 63.4 29 0.00098 35.1 9.4 118 361-487 7-131 (273)
261 1ya0_A SMG-7 transcript varian 61.8 46 0.0016 36.9 11.7 74 286-360 156-229 (497)
262 4b4t_S RPN3, 26S proteasome re 55.2 54 0.0019 36.3 10.6 151 320-472 140-327 (523)
263 2wpv_A GET4, UPF0363 protein Y 55.0 1.9E+02 0.0066 29.7 17.6 32 418-449 185-217 (312)
264 3tj3_C Nuclear pore complex pr 53.0 3.6 0.00012 35.3 0.7 19 729-747 33-51 (114)
265 2ijq_A Hypothetical protein; s 47.9 52 0.0018 30.4 7.7 63 24-86 34-105 (161)
266 1ya0_A SMG-7 transcript varian 47.1 70 0.0024 35.4 10.1 75 319-394 155-229 (497)
267 4fhn_B Nucleoporin NUP120; pro 45.5 1.5E+02 0.0051 36.4 13.8 138 290-444 820-962 (1139)
268 1g1e_B SIN3A; four-helix bundl 44.2 41 0.0014 27.8 5.8 61 402-464 10-84 (89)
269 4b4t_P 26S proteasome regulato 41.5 3.6E+02 0.012 28.9 20.4 96 352-448 138-246 (445)
270 1qsa_A Protein (soluble lytic 38.1 4.8E+02 0.017 29.4 19.9 177 270-448 142-347 (618)
271 2ijq_A Hypothetical protein; s 35.2 1.4E+02 0.0048 27.5 8.5 52 328-379 44-103 (161)
272 3ax2_A Mitochondrial import re 34.4 81 0.0028 25.0 5.7 34 286-319 21-54 (73)
273 3ax2_A Mitochondrial import re 28.6 92 0.0031 24.7 5.1 30 60-89 21-50 (73)
274 1e91_A Paired amphipathic heli 27.8 1.1E+02 0.0039 24.8 5.8 62 402-465 7-79 (85)
275 2czy_A Paired amphipathic heli 27.0 1.4E+02 0.0048 23.7 6.1 59 402-462 4-63 (77)
276 3bu8_A Telomeric repeat-bindin 24.6 2.4E+02 0.0081 27.3 8.1 65 37-101 87-160 (235)
277 2f05_A Paired amphipathic heli 23.9 1.5E+02 0.0051 25.2 6.0 62 402-465 7-79 (105)
278 2cr7_A Paired amphipathic heli 23.1 88 0.003 25.1 4.2 62 402-465 10-72 (80)
279 1om2_A Protein (mitochondrial 21.4 1.1E+02 0.0039 25.5 4.6 34 286-319 24-57 (95)
280 4b4t_P 26S proteasome regulato 21.3 7.6E+02 0.026 26.3 23.8 101 386-487 138-249 (445)
281 1un0_C Nucleoporin NUP2; nucle 21.1 41 0.0014 24.7 1.6 22 728-749 28-49 (51)
282 3ukx_C Bimax2 peptide; arm rep 20.6 32 0.0011 20.8 0.8 16 707-722 4-19 (28)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=7.8e-64 Score=587.74 Aligned_cols=505 Identities=23% Similarity=0.420 Sum_probs=455.1
Q ss_pred hhhhhccccCCCCCHHHHHHHHHHhcC-CChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHHh
Q 004187 9 ESEENITGVADKYNVETAEILANSALH-LPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNN---DDATKQLFSRCLL 84 (770)
Q Consensus 9 e~e~~i~~~~~P~d~~aw~~l~~~~~~-~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~---~~~a~~ifeRaL~ 84 (770)
++|++|. .||+|++.|..|++.... ++++.+|.+||+++..||.+..+|+.|++++++.++ ++.++.+|+|||.
T Consensus 54 ~lE~~l~--~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 54 KLNDMIE--EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHH--HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 5788999 999999999999997654 589999999999999999999999999999999999 9999999999999
Q ss_pred hc---CChHHHHHHHHHHHHHhhcc-C-cchHHHHHHHHHHHHHhcCC-CCCChhhHHHHHHHHhhCCcCchHHHHHHHH
Q 004187 85 IC---LQVPLWRCYIRFIRKVYEKK-G-TEGQEETRKAFDFMLSHVGS-DISSGPIWLEYITFLKSLPALNAQEESQRMI 158 (770)
Q Consensus 85 ~~---p~~~lW~~y~~~~~~~~~~~-~-~~~~e~ar~~~e~aL~~ig~-dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~ 158 (770)
.+ |++++|..|++|+++.++.. + +++.+.++++|++||..+|. |+.++.+|..|++|++.....+.++++++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 99 89999999999999876542 1 34578899999999999999 9999999999999999887777788888999
Q ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccC---------C
Q 004187 159 AIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLA---------V 229 (770)
Q Consensus 159 ~ar~vyqral~~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~---------v 229 (770)
.+|++|+++|.+|..+++.+|..|..||+.++..++++++.+..++|+.|+.+|++++.+.+.|.+.... +
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~ 291 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL 291 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccC
Confidence 9999999999999999999999999999999888899999999999999999999988888887664221 2
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 004187 230 PPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI-KVFQRA 308 (770)
Q Consensus 230 ~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~-~v~erA 308 (770)
|+. ...+..++.+|++|++||+.++..++.....+|+..+|++||..+|+++++|+.||.++...|+.++|+ ++|++|
T Consensus 292 p~~-~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 292 PKP-NEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp CCT-TCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCC-chhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 222 223567789999999999999888866567889999999999999999999999999999999999997 999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC-----------CC----------CcHHHHHHHHHHHHHhcCH
Q 004187 309 LKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS-----------VN----------TTALAHIQFIRFLRRTEGV 367 (770)
Q Consensus 309 i~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~-----------p~----------~~~~~w~~~~~~~~r~~~~ 367 (770)
+..+|.+..+|+.|+.+++..|++++|+++|++++... |. ....+|+.|+++++|.++.
T Consensus 371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999752 31 1356999999999999999
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 004187 368 EAARKYFLDARKS-PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERA 446 (770)
Q Consensus 368 e~A~~~f~~Al~~-~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lfera 446 (770)
+.||.+|++|++. +.+.+++|+.+|.+|+.+.++.+.|+++|+++++.+|+++.+|+.|++|+...|+.++||.+|++|
T Consensus 451 ~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999998 777799999999999987567999999999999999999999999999999999999999999999
Q ss_pred HhCCC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccchhhhhHHhhhhhcccCCCCCCChhhhhhHH
Q 004187 447 LSSLP-PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLV 525 (770)
Q Consensus 447 L~~~p-~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~~e~~~~~~e~ll~~~~~Ry~~ldlw~~~~~~l~~l~ 525 (770)
+..++ +++...+|..|+.||..+|+.+.+.++++|+.+.+|. + ..+..|.+||++.+.-+|+..+|..+-
T Consensus 531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~---~------~~~~~f~~ry~~~~~~~i~~~~l~~~~ 601 (679)
T 4e6h_A 531 IDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE---V------NKLEEFTNKYKVLDVNYLQRLELDYMV 601 (679)
T ss_dssp TTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT---C------CHHHHHHHHTCBTTBCHHHHHTCTTC-
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C------cHHHHHHHHhcCCcchhHHHHHhhhcc
Confidence 99887 4578899999999999999999999999999999992 2 355679999999999999999988876
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=9.7e-60 Score=543.78 Aligned_cols=509 Identities=39% Similarity=0.721 Sum_probs=456.9
Q ss_pred hhhhccccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 004187 10 SEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQV 89 (770)
Q Consensus 10 ~e~~i~~~~~P~d~~aw~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~ 89 (770)
+|++|+ .||+|+++|..+++..+.+++++|+.+|++++..||.+..+|+.|++++.+.|++++|+.+|+||+..+|++
T Consensus 2 le~al~--~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLE--ENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhh--hCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 578888 999999999999998777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHc
Q 004187 90 PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV 169 (770)
Q Consensus 90 ~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~ 169 (770)
++|..|++|+.+..+. ..+..+.++++|++++..+|.+|.+..+|..|+.|+......+.+.++++++.|+.+|+++|.
T Consensus 80 ~lw~~~~~~~~~~~~~-~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGK-LPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHTTT-STTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 9999999998875431 234567788999999999999999999999999999876655556668899999999999999
Q ss_pred cccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHH
Q 004187 170 TPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLT 249 (770)
Q Consensus 170 ~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~ 249 (770)
.|..+...+|..|..|++.++..++++++.+..++|+.|+.+|+++..+.+.+.+....++|.....+..+..+|..|+.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 99988899999999999998888888888888899999999999988888888776666777654445567789999999
Q ss_pred HHHcCCCCCCc-chhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCC
Q 004187 250 FEKGNPQRIDT-ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK-------SGSID-------AAIKVFQRALK-ALP 313 (770)
Q Consensus 250 ~ek~n~~~ld~-~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~-------~g~~e-------~A~~v~erAi~-~~P 313 (770)
|++.++..++. ....++++.+|++|+..+|+++++|+.|+.++.+ .|+++ +|+++|++|++ .+|
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p 318 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK 318 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence 99988765532 2345688999999999999999999999999987 78877 99999999998 799
Q ss_pred CcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004187 314 DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYAL 393 (770)
Q Consensus 314 ~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~ 393 (770)
++..+|+.++.++...|++++|+.+|+++++..|.....+|+.++.++.+.|++++|+.+|++|++.++...++|+..+.
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 99999999999999999999999999999999887334799999999999999999999999999998888899999888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHcCC
Q 004187 394 MAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP--PEESIEVWKRFTQFEQMYGD 471 (770)
Q Consensus 394 le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p--~~~~~~lw~~~~~fE~~~Gd 471 (770)
+++...|+.++|+++|+++++.+|+++.+|..|++++...|+.++||.+|++++...| ++....+|..|+.||..+|+
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 8776569999999999999999999999999999999999999999999999999764 45668899999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccchhhhhHHhhhhhcccCCCCCCChhhhhhHHHH
Q 004187 472 LDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQ 527 (770)
Q Consensus 472 ~~~~~k~~~R~~~~~~~~~e~~~~~~e~ll~~~~~Ry~~ldlw~~~~~~l~~l~~~ 527 (770)
.+.+.++.+|+.+.+|.+.++. ....+++||+|+|+|||++++|+++||+
T Consensus 479 ~~~~~~~~~r~~~~~p~~~~~~------~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 528 (530)
T 2ooe_A 479 LASILKVEKRRFTAFREEYEGK------ETALLVDRYKFMDLYPCSASELKALGYK 528 (530)
T ss_dssp HHHHHHHHHHHHHHTHHHHTTC------HHHHHGGGTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHCchhccCc------hHHHHHHHHHhcccCCCCHHHHHhcCCC
Confidence 9999999999999999555443 2357999999999999999999999986
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=100.00 E-value=2.8e-52 Score=476.43 Aligned_cols=446 Identities=21% Similarity=0.379 Sum_probs=367.5
Q ss_pred ChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhccCcchHHHHHH
Q 004187 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRK 116 (770)
Q Consensus 37 ~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~~y~~~~~~~~~~~~~~~~e~ar~ 116 (770)
+++.||.+|++++..||. ++++.++.||+|||..+|++++|..|++|+.+.++ ..+.+++
T Consensus 10 ~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~-----~~~~i~~ 69 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQ-----KKFKLYE 69 (493)
T ss_dssp --CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC---------CTHH
T ss_pred chHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCc-----hHHHHHH
Confidence 599999999999999998 78999999999999999999999999999999764 3578999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhhHhHHHH
Q 004187 117 AFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKG 196 (770)
Q Consensus 117 ~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y~~fe~~~~~~la~~ 196 (770)
+|++|+..+|.|+.++.+|.+|++|+++.. .++++++.+|++|++||.+|..+.+.+|..|..||+.++..++.+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~-----~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIE-----DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCS-----SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhch-----hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHH
Confidence 999999999999999999999999987642 246789999999999999999999999999999999999989999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHH
Q 004187 197 LLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLM 276 (770)
Q Consensus 197 ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~ 276 (770)
++.+..+.|+.|+.+|++........ ...+|.+|++||++++..++.....+|+..+|++|+.
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~~~~-----------------s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~ 207 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLIRGW-----------------SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD 207 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-----------------SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhc-----------------cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH
Confidence 99999999999999988755443210 1258999999999988777554457899999999999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC--------CC
Q 004187 277 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS--------VN 348 (770)
Q Consensus 277 ~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~--------p~ 348 (770)
.+|+++++|+.|+.++.+.|+.++|+++|+||+.. |.+..+|+.|+.+++.. +. ...++++.+... +.
T Consensus 208 ~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~-~~--~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 208 SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE-AV--YGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT-HH--HHHHHHHTC----------CHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh-HH--HHHHHHHHHhhccchhhhhccc
Confidence 99999999999999999999999999999999999 99999999998874321 11 222333221110 11
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004187 349 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYAD 428 (770)
Q Consensus 349 ~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~ 428 (770)
....+|+.|++|+++.++++.||.+|++| +.+++..++|+.+|.+++.+.++.+.|+++|+.+++.+|+++.+|..|++
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 13579999999999999999999999999 66667899999999999987568999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-ccccccchhh---------
Q 004187 429 FLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR-TGEEGASALE--------- 498 (770)
Q Consensus 429 ~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~-~~e~~~~~~e--------- 498 (770)
|+...|+.++||.+|+++. .+..+|..|+.||..+|+.+++.++++|+.+.+.. +.++..+.++
T Consensus 363 ~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~ 436 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGIL 436 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHh
Confidence 9999999999999999983 46899999999999999999999999999988862 2334333333
Q ss_pred hhHHhhhhhcccCCCCCCChh-h-------hhhHHHHHHHHHhhh
Q 004187 499 DSLQDVVSRYSFMDLWPCSSK-D-------LDHLVRQEWLVKNIN 535 (770)
Q Consensus 499 ~ll~~~~~Ry~~ldlw~~~~~-~-------l~~l~~~~~~~~~~~ 535 (770)
+.+.++++||+|||+|||+.+ + |..+++++++.+|+.
T Consensus 437 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (493)
T 2uy1_A 437 GRYHCFLDSFNFLDLKIRDNSRLLDEFMENLPKISQQNNVLSNLR 481 (493)
T ss_dssp HHHHHHHHHHCBTTBCCCCTTCCCTTTTC----------------
T ss_pred hhHHHHHHHhhhhccccCCccchHHHHHHhccccchhHHHHHhcC
Confidence 678899999999999999955 6 888888888877653
No 4
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=5.1e-33 Score=297.74 Aligned_cols=285 Identities=43% Similarity=0.739 Sum_probs=257.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCc-chhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------cCCH-------HHH
Q 004187 237 EEQQWIAWKRLLTFEKGNPQRIDT-ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK-------SGSI-------DAA 301 (770)
Q Consensus 237 ~~~~~~lw~~yi~~ek~n~~~ld~-~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~-------~g~~-------e~A 301 (770)
+..+..+|++|++||+.++..++. ....++++.+|++++..+|+++++|+.++.++.. .|++ ++|
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 566788999999999998877743 3345899999999999999999999999999974 4885 899
Q ss_pred HHHHHHHHH-hCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC
Q 004187 302 IKVFQRALK-ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS 380 (770)
Q Consensus 302 ~~v~erAi~-~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~ 380 (770)
+.+|++|+. ..|++..+|+.++.++...|++++|+.+|+++++..|.....+|+.++.++.+.|++++|+.+|++|++.
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999 6999999999999999999999999999999999998733349999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCchhHHHH
Q 004187 381 PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS--LPPEESIEV 458 (770)
Q Consensus 381 ~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~--~p~~~~~~l 458 (770)
++...++|+..+.+++...|++++|+++|+++++.+|+++.+|..|+.++..+|++++|+.+|++++.. ++++++..+
T Consensus 164 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 888899999999988765699999999999999999999999999999999999999999999999996 466678999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccchhhhhHHhhhhhcccCCCCCCChhhhhhHHHH
Q 004187 459 WKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQ 527 (770)
Q Consensus 459 w~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~~~e~~~~~~e~ll~~~~~Ry~~ldlw~~~~~~l~~l~~~ 527 (770)
|..++.||...|+.+.+.++++|+.+.+|...+.. .+..+.+||++++++||++.+|..|||.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~------~~~~~~~r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREEYEGK------ETALLVDRYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC------HHHHHHTTTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccc------hHHHHHHHHHhcccCCCCHHHHHhcCCC
Confidence 99999999999999999999999999999433332 2256899999999999999999999985
No 5
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=8.4e-32 Score=316.08 Aligned_cols=420 Identities=13% Similarity=0.150 Sum_probs=326.0
Q ss_pred hhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHH
Q 004187 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRK 116 (770)
Q Consensus 38 i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~ 116 (770)
-++.+..||+.|..+|.+...|..|++++.+.++++.++.+|+|+|..+| +..+|+.|+.++.+.++ ....+.+++
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~---~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKME---ELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-----CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCC---cchHHHHHH
Confidence 34466789999999999999999999999999999999999999999999 78999999999887543 123789999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-cc--ccHHHHHHHHHHHHHHhhHhH
Q 004187 117 AFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PT--HHVEQLWKDYENFENSVSRQL 193 (770)
Q Consensus 117 ~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~--~~~~~l~~~y~~fe~~~~~~l 193 (770)
+|++|+..+.. +.+..+|..|+.|+........ ...+..+.+|.+|++|+.. .. .....+|..|..|+.......
T Consensus 125 lfeRal~~~~~-~~sv~LW~~Yl~f~~~~~~~~~-~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 125 VLARCLSKELG-NNDLSLWLSYITYVRKKNDIIT-GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHTCSSSC-CCCHHHHHHHHHHHHHHSCSTT-THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHHHhccccc-ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 99999887532 2578899999999875322110 0123457789999999975 33 234679999999987542210
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCc------chhhhHH
Q 004187 194 AKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDT------ASSNKRI 267 (770)
Q Consensus 194 a~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~------~~~~~r~ 267 (770)
. .+.+.+++.++++|++ .+.+|... .-.+|..|..|++.....+.. ...+.++
T Consensus 203 ~----~eeq~~~~~~R~iy~r-----------aL~iP~~~------~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~A 261 (679)
T 4e6h_A 203 K----FEEQQRVQYIRKLYKT-----------LLCQPMDC------LESMWQRYTQWEQDVNQLTARRHIGELSAQYMNA 261 (679)
T ss_dssp H----HHHHHHHHHHHHHHHH-----------HTTSCCSS------HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHH
T ss_pred c----HHHHhHHHHHHHHHHH-----------HHhCccHH------HHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHH
Confidence 0 0124457788888875 23444332 225999999999862111110 0112222
Q ss_pred HHHHHHHHH------H-cCCC-------------------HHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC
Q 004187 268 IFTYEQCLM------Y-LYHY-------------------PDIWYDYATWNAKSGS-------IDAAIKVFQRALKALPD 314 (770)
Q Consensus 268 ~~~ye~aL~------~-~p~~-------------------~~~w~~~a~~l~~~g~-------~e~A~~v~erAi~~~P~ 314 (770)
...|...-. . .|.. ..+|..|+.|....+. ...++.+|++++..+|.
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~ 341 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF 341 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 233332111 0 1221 2689999999887641 34567899999999999
Q ss_pred cHHHHHHHHHHHHHhCcHHHHH-HHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC-----------C
Q 004187 315 SEMLRYAFAELEESRGAIAAAK-KLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-----------N 382 (770)
Q Consensus 315 s~~lw~~~a~~~~~~g~~e~A~-~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~-----------~ 382 (770)
+..+|+.||.++...|+.++|+ ++|++++..+|. ...+|+.|+.++.+.++++.|+.+|+++++.. +
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~-s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN-SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 9999999999999999999996 999999999997 78999999999999999999999999999741 2
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 004187 383 -----------FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR-FMHEPAYILEYADFLSRLN-DDRNIRALFERALSS 449 (770)
Q Consensus 383 -----------~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~-~p~~~~~~l~ya~~l~~~g-~~~~Ar~lferaL~~ 449 (770)
....+|+.++.++... ++.+.|+++|+++++. .+....+|..++.++...+ +.+.||.+|+++|+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~-~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRI-QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1346899999998886 8999999999999998 4445689999999998875 489999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 450 LPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 450 ~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+| ++..+|..|+.||...|+.+.++.++.|+.+..+
T Consensus 500 ~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 500 FA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred CC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 98 6788999999999999999999999999999887
No 6
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=1.1e-29 Score=292.71 Aligned_cols=404 Identities=16% Similarity=0.207 Sum_probs=313.8
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHH
Q 004187 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFML 122 (770)
Q Consensus 44 ~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL 122 (770)
+|++++..+|.+...|..++.. .+.|++++|+.+|+|++..+| +..+|..|+.++.+.++ .+.++++|++++
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~------~~~a~~~~~ral 73 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKN------YDKVEKLFQRCL 73 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHT
T ss_pred ChhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHH
Confidence 4899999999999999999995 788999999999999999999 78999999999998665 789999999888
Q ss_pred HhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-cc-ccHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 004187 123 SHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PT-HHVEQLWKDYENFENSVSRQLAKGLLSE 200 (770)
Q Consensus 123 ~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~-~~~~~l~~~y~~fe~~~~~~la~~ll~e 200 (770)
.. +| +..+|..|+.|+...... . ..-.+.++.+|++++.. +. .....+|..|..|+....... .. .
T Consensus 74 ~~---~p-~~~lw~~~~~~~~~~~~~--~--~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~--~~--~ 141 (530)
T 2ooe_A 74 MK---VL-HIDLWKCYLSYVRETKGK--L--PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVG--SY--A 141 (530)
T ss_dssp TT---CC-CHHHHHHHHHHHHHHTTT--S--TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCS--ST--T
T ss_pred hc---CC-ChHHHHHHHHHHHHHccc--h--hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcc--cH--H
Confidence 75 45 678999999987531100 0 11234466799999865 22 123689999999986421100 00 0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCC------CcchhhhHHHHHHHH-
Q 004187 201 YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI------DTASSNKRIIFTYEQ- 273 (770)
Q Consensus 201 ~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~l------d~~~~~~r~~~~ye~- 273 (770)
..+++++|+.+|++ .| .+ |... ...+|..|..|++.....+ +....+..+..+|++
T Consensus 142 ~~~~~~~a~~~y~~------al-----~~-P~~~-----~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~ 204 (530)
T 2ooe_A 142 ENQRITAVRRVYQR------GC-----VN-PMIN-----IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEY 204 (530)
T ss_dssp HHHHHHHHHHHHHH------HT-----TS-CCTT-----HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH------HH-----hc-hhhh-----HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 14677888888875 22 23 3221 1258888888875321100 011223344444443
Q ss_pred -----HHHH-----cCCC-------HHHHHHHHHHHHHcC----CH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004187 274 -----CLMY-----LYHY-------PDIWYDYATWNAKSG----SI----DAAIKVFQRALKALPDSEMLRYAFAELEES 328 (770)
Q Consensus 274 -----aL~~-----~p~~-------~~~w~~~a~~l~~~g----~~----e~A~~v~erAi~~~P~s~~lw~~~a~~~~~ 328 (770)
.+.. .|+. ..+|..|+.+..... +. ..++.+|++++..+|.+..+|+.|+.++.+
T Consensus 205 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~ 284 (530)
T 2ooe_A 205 ETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ 284 (530)
T ss_dssp HHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 2221 2222 379999998887642 32 478899999999999999999999999986
Q ss_pred -------hCcHH-------HHHHHHHHHhc-cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 004187 329 -------RGAIA-------AAKKLYESLLT-DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTY-HVYVAYA 392 (770)
Q Consensus 329 -------~g~~e-------~A~~iye~al~-~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~-~~yi~~a 392 (770)
.|+++ +|+.+|+++++ ..|. ...+|+.++.++.+.|++++|+.+|+++++.++... .+|+.++
T Consensus 285 ~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 363 (530)
T 2ooe_A 285 SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 363 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHH
T ss_pred hchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHH
Confidence 68876 99999999997 7787 789999999999999999999999999999888764 6999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCC
Q 004187 393 LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS-RLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGD 471 (770)
Q Consensus 393 ~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~-~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd 471 (770)
.++... |+.++|+++|+++++..|....++...+.++. ..|+.++|+.+|+++++..| ++..+|..|+.++...|+
T Consensus 364 ~~~~~~-~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 364 KFARRA-EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNE 440 (530)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTC
T ss_pred HHHHHh-cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCC
Confidence 998775 99999999999999998887777776665543 58999999999999999988 778999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 004187 472 LDSTLKVEQRRKEALS 487 (770)
Q Consensus 472 ~~~~~k~~~R~~~~~~ 487 (770)
.+.++.+++|+.+..+
T Consensus 441 ~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HhhHHHHHHHHHhccC
Confidence 9999999999999866
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.4e-26 Score=250.49 Aligned_cols=377 Identities=14% Similarity=0.098 Sum_probs=295.1
Q ss_pred HhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcch
Q 004187 32 SALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEG 110 (770)
Q Consensus 32 ~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~ 110 (770)
.++.+++++|...|++++...|++..+|..++..+...|++++|...+++++...| +...|...+......++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~------ 82 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ------ 82 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC------
Confidence 34567888888888888888888888888888888888888888888888888887 67888888888777665
Q ss_pred HHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHh
Q 004187 111 QEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSV 189 (770)
Q Consensus 111 ~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~ 189 (770)
.+++.+.|++++.. +|.....|...+..+. ..++++.|...|++++.. |.... .|.....
T Consensus 83 ~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~----- 143 (388)
T 1w3b_A 83 LQEAIEHYRHALRL---KPDFIDGYINLAAALV---------AAGDMEGAVQAYVSALQYNPDLYC--VRSDLGN----- 143 (388)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH---------HHSCSSHHHHHHHHHHHHCTTCTH--HHHHHHH-----
T ss_pred HHHHHHHHHHHHHc---CcchHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHH-----
Confidence 67888888888775 6666677777776654 356778888888888876 55321 1111111
Q ss_pred hHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHH
Q 004187 190 SRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIF 269 (770)
Q Consensus 190 ~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~ 269 (770)
+....+++++|...|++ .+. ..|.. ...|..+....... +..+.++.
T Consensus 144 --------~~~~~g~~~~A~~~~~~------al~-----~~p~~-------~~~~~~l~~~~~~~-------g~~~~A~~ 190 (388)
T 1w3b_A 144 --------LLKALGRLEEAKACYLK------AIE-----TQPNF-------AVAWSNLGCVFNAQ-------GEIWLAIH 190 (388)
T ss_dssp --------HHHTTSCHHHHHHHHHH------HHH-----HCTTC-------HHHHHHHHHHHHTT-------TCHHHHHH
T ss_pred --------HHHHccCHHHHHHHHHH------HHH-----hCCCC-------HHHHHHHHHHHHHc-------CCHHHHHH
Confidence 11124566777766654 111 12322 12454444333221 24566788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
.|++++...|.+.++|..++.++...|++++|+..|++++...|++..+|..++.++...|++++|...|+++++..|.
T Consensus 191 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~- 269 (388)
T 1w3b_A 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH- 269 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 429 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~ 429 (770)
...+|..++..+.+.|++++|+.+|+++++..+....+|..++.+.... |++++|...|+++++.+|+++..+..++..
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ-GNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 6788999999999999999999999999988887888888888887664 999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcC
Q 004187 430 LSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 430 l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~G 470 (770)
+...|++++|..+|+++++..| +....|..........|
T Consensus 349 ~~~~g~~~~A~~~~~~a~~~~p--~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIRISP--TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhhCC--CCHHHHHhHHHHHHHcc
Confidence 9999999999999999999887 56677777666555544
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.1e-25 Score=245.12 Aligned_cols=364 Identities=12% Similarity=0.062 Sum_probs=306.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 004187 62 YVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 140 (770)
Q Consensus 62 yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~ 140 (770)
.+..+.+.|++++|..+|++++...| +...|...+......++ .+.+...++.++.. +|.....|...+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~------~~~a~~~~~~a~~~---~p~~~~~~~~lg~ 75 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR------LDRSAHFSTLAIKQ---NPLLAEAYSNLGN 75 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhc---CCCchHHHHHHHH
Confidence 46677889999999999999999999 67888888888776654 67899999988875 6777788988887
Q ss_pred HHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004187 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYC 219 (770)
Q Consensus 141 fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~ 219 (770)
.+. ..+++++|...|++++.. |.... .|..... +....++++.|...|.+
T Consensus 76 ~~~---------~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~-------------~~~~~g~~~~A~~~~~~----- 126 (388)
T 1w3b_A 76 VYK---------ERGQLQEAIEHYRHALRLKPDFID--GYINLAA-------------ALVAAGDMEGAVQAYVS----- 126 (388)
T ss_dssp HHH---------HHTCHHHHHHHHHHHHHHCTTCHH--HHHHHHH-------------HHHHHSCSSHHHHHHHH-----
T ss_pred HHH---------HCCCHHHHHHHHHHHHHcCcchHH--HHHHHHH-------------HHHHcCCHHHHHHHHHH-----
Confidence 754 467899999999999987 65421 1111110 11124566777777654
Q ss_pred HHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHH
Q 004187 220 EEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSID 299 (770)
Q Consensus 220 ~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e 299 (770)
.+. ..|... ..|..+....... +..+.+...|++++...|.+..+|..++.++...|+++
T Consensus 127 -al~-----~~p~~~-------~~~~~l~~~~~~~-------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 127 -ALQ-----YNPDLY-------CVRSDLGNLLKAL-------GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp -HHH-----HCTTCT-------HHHHHHHHHHHTT-------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred -HHH-----hCCCcH-------HHHHHHHHHHHHc-------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 222 123321 2454444433321 34567888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 004187 300 AAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARK 379 (770)
Q Consensus 300 ~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~ 379 (770)
+|+..|++++...|++...|+.++.++...|++++|...|++++...|. ...+|..++..+.+.|++++|+..|+++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHH
Q 004187 380 SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVW 459 (770)
Q Consensus 380 ~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw 459 (770)
..+....+|..++.++... |++++|.++|+++++..|+++..|...+.++...|++++|..+|+++++..| +....|
T Consensus 266 ~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~ 342 (388)
T 1w3b_A 266 LQPHFPDAYCNLANALKEK-GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAH 342 (388)
T ss_dssp TCSSCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT--TCHHHH
T ss_pred hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHH
Confidence 9888899999999987775 9999999999999999999999999999999999999999999999999988 667889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 460 KRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 460 ~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..++......|+.+.+...++++.+..|
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999998899999999999999998877
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.1e-24 Score=252.67 Aligned_cols=419 Identities=11% Similarity=0.023 Sum_probs=318.3
Q ss_pred CCHHHHHHHHH-HhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004187 21 YNVETAEILAN-SALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFI 99 (770)
Q Consensus 21 ~d~~aw~~l~~-~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~~y~~~~ 99 (770)
.+...|..++. ....+++++|..+|++++...|+. ..|..++..+.+.|++++|..+|++++...+++..|...+...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 46677777766 345567777777777777777744 5667777777777777777777777765555566666555555
Q ss_pred HHHhhcc------------C--------------------------------cchHHHHHHHHHHHHHhcCCCCCChhhH
Q 004187 100 RKVYEKK------------G--------------------------------TEGQEETRKAFDFMLSHVGSDISSGPIW 135 (770)
Q Consensus 100 ~~~~~~~------------~--------------------------------~~~~e~ar~~~e~aL~~ig~dp~s~~lW 135 (770)
.+.++.. . ....+++.+.|+++++. +|.+...|
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~ 237 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV---DAKCYEAF 237 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CchhhHHH
Confidence 4433210 0 01256788888888875 56666677
Q ss_pred HHHHHHHhhC-----------------------------CcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHH
Q 004187 136 LEYITFLKSL-----------------------------PALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFE 186 (770)
Q Consensus 136 ~~yi~fl~~~-----------------------------~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y~~fe 186 (770)
..++...... .-...+...+++++|+.+|++++..|.+ ...|......
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~- 314 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS--SDLLLCKADT- 314 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGC--HHHHHHHHHH-
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCch--HHHHHHHHHH-
Confidence 6654321100 0012344578889999999998877532 1222221111
Q ss_pred HHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhH
Q 004187 187 NSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKR 266 (770)
Q Consensus 187 ~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r 266 (770)
....+++++|..+|++. +.. .|... ..|..++..... .+..+.
T Consensus 315 ------------~~~~g~~~~A~~~~~~~------~~~-----~~~~~-------~~~~~l~~~~~~-------~g~~~~ 357 (597)
T 2xpi_A 315 ------------LFVRSRFIDVLAITTKI------LEI-----DPYNL-------DVYPLHLASLHE-------SGEKNK 357 (597)
T ss_dssp ------------HHHTTCHHHHHHHHHHH------HHH-----CTTCC-------TTHHHHHHHHHH-------HTCHHH
T ss_pred ------------HHHhcCHHHHHHHHHHH------HHc-----CcccH-------HHHHHHHHHHHH-------hCCHHH
Confidence 11256788888887752 211 12221 134444432211 123456
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 004187 267 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 346 (770)
Q Consensus 267 ~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~ 346 (770)
+..+|++++...|.+..+|..++.++...|++++|+++|+++++..|.+...|..++.++.+.|++++|.++|+++++..
T Consensus 358 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh------CCCc-
Q 004187 347 VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR------FMHE- 419 (770)
Q Consensus 347 p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~------~p~~- 419 (770)
|. ...+|..++..+.+.|++++|+.+|+++++..+....+|..++.++... |++++|.++|+++++. .|++
T Consensus 438 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 438 QG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp TT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred cc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhccccchhhH
Confidence 87 6789999999999999999999999999998777889999999988775 9999999999999998 4554
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 420 PAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 420 ~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..+|..++..+...|++++|..+|+++++..| ++..+|..++......|+.+.+.+.++++.+..|
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLST--NDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999887 6678999999999999999999999999999988
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.4e-23 Score=243.47 Aligned_cols=389 Identities=9% Similarity=0.018 Sum_probs=302.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHH------------
Q 004187 54 TAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFM------------ 121 (770)
Q Consensus 54 ~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~a------------ 121 (770)
.+...|...+..+.+.|++++|..+|++++...|+...|...+......++ .+.+.++|+++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~ 155 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGD------YARAKCLLTKEDLYNRSSACRYL 155 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTC------HHHHHHHHHHTCGGGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCc------HHHHHHHHHHHhccccchhHHHH
Confidence 467889999999999999999999999999988988888888877776554 44555555543
Q ss_pred --------------HHhcC-CCCCC-------------------hhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHH
Q 004187 122 --------------LSHVG-SDISS-------------------GPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRA 167 (770)
Q Consensus 122 --------------L~~ig-~dp~s-------------------~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqra 167 (770)
+..+. ..|.. ..+|...+... ...+++++|+.+|+++
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY---------TNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH---------HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH---------HHcCCHHHHHHHHHHH
Confidence 22221 22322 33555555553 4568899999999999
Q ss_pred Hcc-ccccHHHHHHHHHH-----------------HHHHhh--HhHHHHHH------HHHhHHHHHHHHHHHHHHHHHHH
Q 004187 168 VVT-PTHHVEQLWKDYEN-----------------FENSVS--RQLAKGLL------SEYQSKYTSARAVYRERKKYCEE 221 (770)
Q Consensus 168 l~~-P~~~~~~l~~~y~~-----------------fe~~~~--~~la~~ll------~e~~~~y~~A~~v~k~~~~~~~~ 221 (770)
+.. |... ..|..... |..... ......+. ....+++++|..++.+
T Consensus 227 ~~~~p~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~------- 297 (597)
T 2xpi_A 227 LMVDAKCY--EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS------- 297 (597)
T ss_dssp HHHCTTCH--HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT-------
T ss_pred HHhCchhh--HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH-------
Confidence 976 5432 11111110 000000 00000000 0013455666665543
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHH
Q 004187 222 IDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAA 301 (770)
Q Consensus 222 L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A 301 (770)
+...++ ....|..++...... +..+.++..|++++...|.+..+|..++..+...|+.++|
T Consensus 298 ----~~~~~~--------~~~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 298 ----INGLEK--------SSDLLLCKADTLFVR-------SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358 (597)
T ss_dssp ----STTGGG--------CHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHH
T ss_pred ----hhcCCc--------hHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHH
Confidence 222211 124666666543322 3467788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC
Q 004187 302 IKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP 381 (770)
Q Consensus 302 ~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~ 381 (770)
..+|++++...|++..+|+.++.++.+.|++++|.++|+++++..|. ...+|..++..+.+.|++++|+.+|+++++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 359 YLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999887 78899999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----chhHH
Q 004187 382 NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP-----PEESI 456 (770)
Q Consensus 382 ~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p-----~~~~~ 456 (770)
+....+|..++.+.... |++++|.++|+++++..|+++..|..++..+...|++++|..+|+++++..| ++...
T Consensus 438 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQL-GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 87788999999887775 9999999999999999999999999999999999999999999999998631 13337
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 457 EVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 457 ~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.+|..++......|+.+.+.+.++++.+..|
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999887
No 11
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.94 E-value=2.7e-25 Score=253.47 Aligned_cols=402 Identities=11% Similarity=0.062 Sum_probs=288.7
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhc---C-ChHHHHHHHHHHH
Q 004187 26 AEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNN-DDATKQLFSRCLLIC---L-QVPLWRCYIRFIR 100 (770)
Q Consensus 26 w~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~-~~~a~~ifeRaL~~~---p-~~~lW~~y~~~~~ 100 (770)
|...+..+-.+++++++.+|++++...| +.++|..|+.++.+.++ .+.++.+|++++... + +.++|..|++|+.
T Consensus 18 yer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~ 96 (493)
T 2uy1_A 18 MEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEG 96 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 4444445555789999999999999999 88899999999999874 467899999999874 3 7899999999975
Q ss_pred HHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCch----HHHHHHHHHHHHHHHHHHcc-ccccH
Q 004187 101 KVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNA----QEESQRMIAIRKAYQRAVVT-PTHHV 175 (770)
Q Consensus 101 ~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~----~~~~~~~~~ar~vyqral~~-P~~~~ 175 (770)
.... .....+.++++|++||. ++.. .-..+|..|..|+......+. .+....+..+|.+|+.+... +...
T Consensus 97 ~~~~--~~~~~~~vR~iy~rAL~-~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s- 171 (493)
T 2uy1_A 97 KIED--EQTRIEKIRNGYMRALQ-TPMG-SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS- 171 (493)
T ss_dssp SCSS--HHHHHHHHHHHHHHHHT-SCCT-THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-
T ss_pred hchh--hhHHHHHHHHHHHHHHh-Chhh-hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc-
Confidence 3100 00136789999999998 4432 335699999999876322110 01223456678888888754 2212
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCC
Q 004187 176 EQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNP 255 (770)
Q Consensus 176 ~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~ 255 (770)
..+|..|..||+.....+... ....+...+|++ .|.. . |.. -.+|..|+.|+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~------~~~~Rv~~~ye~------al~~----~-p~~-------~~lW~~ya~~~~~~- 226 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGR------PHESRMHFIHNY------ILDS----F-YYA-------EEVYFFYSEYLIGI- 226 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHH------HHHHHHHHHHHH------HHHH----T-TTC-------HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCCccCcch------hhHHHHHHHHHH------HHHc----C-CCC-------HHHHHHHHHHHHHc-
Confidence 258999999986421111000 011223334443 3321 1 221 25999999998654
Q ss_pred CCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------CCCcHHHHHHH
Q 004187 256 QRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-------------LPDSEMLRYAF 322 (770)
Q Consensus 256 ~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~-------------~P~s~~lw~~~ 322 (770)
+..+++..+|++|+.. |.+..+|+.|+.++.. . + ++++.... .+....+|..|
T Consensus 227 ------~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~-~---~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 227 ------GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDE-E---A---VYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp ------TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTC-T---H---HHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcch-h---H---HHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 2346788999999999 9999999999887421 1 1 12222221 12245789999
Q ss_pred HHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 004187 323 AELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE-GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD 401 (770)
Q Consensus 323 a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~-~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~ 401 (770)
+.++.+.++.+.|+.+|+++ ...+ ....+|+.++.++.+.+ +.+.|+.+|+++++..+.....|+.++.++... |+
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~-~~ 369 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI-GD 369 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CC
Confidence 99999999999999999999 4333 35789999999998877 599999999999987766788888898888776 99
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHHcCCHHHHHHH
Q 004187 402 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP---PEESIEVWKRFTQFEQMYGDLDSTLKV 478 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p---~~~~~~lw~~~~~fE~~~Gd~~~~~k~ 478 (770)
.+.|+.+|+++ .....+|..|++|+...|+.+.+|.++++++..+. .++...+...|..||..+|++..+..-
T Consensus 370 ~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~ 445 (493)
T 2uy1_A 370 EENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDS 445 (493)
T ss_dssp HHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHH
Confidence 99999999998 34689999999999999999999999999997442 123344557778889888888776664
Q ss_pred H
Q 004187 479 E 479 (770)
Q Consensus 479 ~ 479 (770)
+
T Consensus 446 ~ 446 (493)
T 2uy1_A 446 F 446 (493)
T ss_dssp H
T ss_pred h
Confidence 4
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.8e-23 Score=230.02 Aligned_cols=339 Identities=12% Similarity=0.021 Sum_probs=232.9
Q ss_pred CchhhhhccccCCCCCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004187 7 EPESEENITGVADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLI 85 (770)
Q Consensus 7 ~~e~e~~i~~~~~P~d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~ 85 (770)
-+.+.+.+. .+|.+.+.|..++..+ ..+++++|..+|++++...|.+...|..++..+...|++++|..+|++++..
T Consensus 12 ~~~~~~~~~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYF--QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccc--ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 445566666 7888888888887744 5567888888888888888888888888888888888888888888888887
Q ss_pred cC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCCh---hhHHHHHHHHhhCCcCchHHHHHHHHHHH
Q 004187 86 CL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSG---PIWLEYITFLKSLPALNAQEESQRMIAIR 161 (770)
Q Consensus 86 ~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~---~lW~~yi~fl~~~~~~~~~~~~~~~~~ar 161 (770)
.| +...|..++......++ .+.+.+.|++++.. +|.+. ..|..++.... ..
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~----------------~~ 144 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGK------LDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDE----------------MQ 144 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHH----------------HH
T ss_pred CCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHH----------------HH
Confidence 77 46666666666655443 45666666655542 33333 33333222110 00
Q ss_pred HHHHHHHccccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHH
Q 004187 162 KAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQW 241 (770)
Q Consensus 162 ~vyqral~~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~ 241 (770)
..+..+...
T Consensus 145 -----------------------------------------~~~~~a~~~------------------------------ 153 (450)
T 2y4t_A 145 -----------------------------------------RLRSQALNA------------------------------ 153 (450)
T ss_dssp -----------------------------------------HHHHHHHHH------------------------------
T ss_pred -----------------------------------------HHHHHHHHH------------------------------
Confidence 000000000
Q ss_pred HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 004187 242 IAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYA 321 (770)
Q Consensus 242 ~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~ 321 (770)
+.. +..+.++..|++++...|.+..+|..++.++...|++++|+.+|++++...|++..+|+.
T Consensus 154 --------~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 216 (450)
T 2y4t_A 154 --------FGS---------GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216 (450)
T ss_dssp --------HHH---------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHH
T ss_pred --------HHc---------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 001 123445667788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHcCCCCC----H
Q 004187 322 FAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF------------IRFLRRTEGVEAARKYFLDARKSPNFT----Y 385 (770)
Q Consensus 322 ~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~------------~~~~~r~~~~e~A~~~f~~Al~~~~~~----~ 385 (770)
++.++...|++++|...|++++...|. ...+|..+ +..+...|++++|+.+|+++++..+.. .
T Consensus 217 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 295 (450)
T 2y4t_A 217 ISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV 295 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHH
Confidence 888888888888888888888888776 55665554 777777888888888888888766554 3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 004187 386 HVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ 464 (770)
Q Consensus 386 ~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~ 464 (770)
.+|..++.+.... |++++|...|+++++..|+++.+|..++..+...|++++|...|+++++..| ++..+|..+..
T Consensus 296 ~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 371 (450)
T 2y4t_A 296 RSKERICHCFSKD-EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE--NDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--chHHHHHHHHH
Confidence 3566677776664 8888888888888888888888888888888888888888888888888777 44555555553
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=7.4e-23 Score=233.73 Aligned_cols=421 Identities=12% Similarity=0.047 Sum_probs=312.4
Q ss_pred CHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHH
Q 004187 22 NVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFI 99 (770)
Q Consensus 22 d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~ 99 (770)
..+.|..++..+ ..+++++|...|++++..+|++...|..++..+.+.|++++|...|++++...| +...|..++...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 457778887744 567999999999999999999999999999999999999999999999999998 689999999998
Q ss_pred HHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccc-----
Q 004187 100 RKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTH----- 173 (770)
Q Consensus 100 ~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~----- 173 (770)
...++ .+.+.+.|+ ++.. +|.....|.. . +........+..+|++++.. |..
T Consensus 104 ~~~g~------~~~A~~~~~-~~~~---~~~~~~~~~~---~---------~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 161 (537)
T 3fp2_A 104 ESLGN------FTDAMFDLS-VLSL---NGDFDGASIE---P---------MLERNLNKQAMKVLNENLSKDEGRGSQVL 161 (537)
T ss_dssp HHHTC------HHHHHHHHH-HHC-----------------C---------HHHHHHHHHHHHHHHHHCC-------CCC
T ss_pred HHcCC------HHHHHHHHH-HHhc---CCCCChHHHH---H---------HHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 88776 678888885 5543 3433333322 1 11234456788888888864 211
Q ss_pred -cHHHHHHHHHHHHHH--h----------------hHhHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccC
Q 004187 174 -HVEQLWKDYENFENS--V----------------SRQLA------KGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLA 228 (770)
Q Consensus 174 -~~~~l~~~y~~fe~~--~----------------~~~la------~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~ 228 (770)
....+...+..+... + ...+. ..-..+..+.|.+|..+|++ .+ .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~------~l-----~ 230 (537)
T 3fp2_A 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS------LL-----S 230 (537)
T ss_dssp CCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH------HH-----C
T ss_pred chHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH------HH-----H
Confidence 111111111111000 0 00000 00111122355555555543 22 2
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004187 229 VPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRA 308 (770)
Q Consensus 229 v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erA 308 (770)
..|............|......... .+..+.++..|++++...|. ..+|+.++.++...|++++|+..|+++
T Consensus 231 ~~p~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 302 (537)
T 3fp2_A 231 ANTVDDPLRENAALALCYTGIFHFL-------KNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKA 302 (537)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HCCCcchhhHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3343311001111223222222211 13456788999999999999 999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHH
Q 004187 309 LKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVY 388 (770)
Q Consensus 309 i~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~y 388 (770)
+...|++..+|+.++.++...|++++|...|+++++..|. ...+|..++..+...|++++|..+|+++++..+....+|
T Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 381 (537)
T 3fp2_A 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVP 381 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999999999999999987 678999999999999999999999999999888888899
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCc
Q 004187 389 VAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA------YILEYADFLSRL----------NDDRNIRALFERALSSLPP 452 (770)
Q Consensus 389 i~~a~le~~~~g~~~~A~~ife~alk~~p~~~~------~~l~ya~~l~~~----------g~~~~Ar~lferaL~~~p~ 452 (770)
..++.++... |++++|.+.|+++++..|++.. .+...+.++... |++++|..+|+++++..|
T Consensus 382 ~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p- 459 (537)
T 3fp2_A 382 TFFAEILTDR-GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP- 459 (537)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-
Confidence 9999988775 9999999999999998765432 345667778888 999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 453 EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 453 ~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
++..+|..++......|+.+.+.+.++++.+..|
T Consensus 460 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 460 -RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred -CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 6678899999999999999999999999999988
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.6e-22 Score=225.32 Aligned_cols=432 Identities=12% Similarity=0.076 Sum_probs=320.6
Q ss_pred CHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHH
Q 004187 22 NVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFI 99 (770)
Q Consensus 22 d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~ 99 (770)
+.+.|..++..+ ..+++++|...|++++...| +..+|..++..+.+.|++++|...|++++...| +...|...+...
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 357788887744 56799999999999999999 688999999999999999999999999999998 678999999988
Q ss_pred HHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHc----------
Q 004187 100 RKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV---------- 169 (770)
Q Consensus 100 ~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~---------- 169 (770)
...++ .+.+...|++++.. +|.+......++...... ........+...++++..
T Consensus 84 ~~~g~------~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (514)
T 2gw1_A 84 EGLGK------FADAMFDLSVLSLN---GDFNDASIEPMLERNLNK------QAMSKLKEKFGDIDTATATPTELSTQPA 148 (514)
T ss_dssp HHTTC------HHHHHHHHHHHHHS---SSCCGGGTHHHHHHHHHH------HHHHHHTTC-------------------
T ss_pred HHHhh------HHHHHHHHHHHHhc---CCCccchHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 88765 68999999988875 343433333333322110 000111111111111110
Q ss_pred ---------cccccHHHHHHHHHHHHHH-----------hhHhHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhhhhc
Q 004187 170 ---------TPTHHVEQLWKDYENFENS-----------VSRQLAKGLLSEY---QSKYTSARAVYRERKKYCEEIDWNM 226 (770)
Q Consensus 170 ---------~P~~~~~~l~~~y~~fe~~-----------~~~~la~~ll~e~---~~~y~~A~~v~k~~~~~~~~L~~~~ 226 (770)
.|.. ..+......+... ....+......-. .+++..|...+++.....+..
T Consensus 149 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---- 222 (514)
T 2gw1_A 149 KERKDKQENLPSV--TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ---- 222 (514)
T ss_dssp --------CCCCH--HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHhhccCCchh--HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh----
Confidence 0110 0000000000000 0000001111111 467888888877633321111
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004187 227 LAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQ 306 (770)
Q Consensus 227 ~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~e 306 (770)
+...|............|..+....... +..+.++..|++++...|. ..+|..++.++...|++++|+..|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLK-------NDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHS-------SCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred hccCccccccChHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0011222111122334555444432221 3457788999999999999 9999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHH
Q 004187 307 RALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYH 386 (770)
Q Consensus 307 rAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~ 386 (770)
+++...|.+..+|+.++.++...|++++|...|+++++..|. ...+|..++..+...|++++|+.+|+++++..+....
T Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 373 (514)
T 2gw1_A 295 KALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE 373 (514)
T ss_dssp HHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred HHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH
Confidence 999999999999999999999999999999999999999988 6789999999999999999999999999998777788
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHh---cCChhHHHHHHHHHHhCCCchhHHH
Q 004187 387 VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA------YILEYADFLSR---LNDDRNIRALFERALSSLPPEESIE 457 (770)
Q Consensus 387 ~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~------~~l~ya~~l~~---~g~~~~Ar~lferaL~~~p~~~~~~ 457 (770)
+|..+|.+.... |++++|..+|+++++..|+++. +|...+.++.. .|++++|...|++++...| ++..
T Consensus 374 ~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~ 450 (514)
T 2gw1_A 374 VPNFFAEILTDK-NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--RSEQ 450 (514)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--TCHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--ccHH
Confidence 999999988775 9999999999999999888754 89999999999 9999999999999999887 6678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 458 VWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 458 lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.|..++......|+.+.+...++++.+..|
T Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 451 AKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999988
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.8e-21 Score=208.98 Aligned_cols=329 Identities=12% Similarity=0.021 Sum_probs=254.9
Q ss_pred CHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHH
Q 004187 22 NVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFI 99 (770)
Q Consensus 22 d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~ 99 (770)
|++.|..++..+ ..+++++|...|++++..+|.+...|..++..+...|++++|...|++++...| +...|...+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 467777777744 556888888888888888888888888888888888888888888888888877 567777777766
Q ss_pred HHHhhccCcchHHHHHHHHHHHHHhcCCCC---CChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHH
Q 004187 100 RKVYEKKGTEGQEETRKAFDFMLSHVGSDI---SSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVE 176 (770)
Q Consensus 100 ~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp---~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~ 176 (770)
...++ .+.+.+.|++++.. +| .+..+|..+..+.. ++
T Consensus 82 ~~~~~------~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~----------------~~--------------- 121 (359)
T 3ieg_A 82 LKQGK------LDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADE----------------MQ--------------- 121 (359)
T ss_dssp HHHTC------HHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHH----------------HH---------------
T ss_pred HHcCC------hHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHH----------------HH---------------
Confidence 66554 45666666655542 33 22222222111100 00
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCC
Q 004187 177 QLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ 256 (770)
Q Consensus 177 ~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~ 256 (770)
..+..+. +.+..
T Consensus 122 --------------------------~~~~~a~--------------------------------------~~~~~---- 133 (359)
T 3ieg_A 122 --------------------------RLRSQAL--------------------------------------DAFDG---- 133 (359)
T ss_dssp --------------------------HHHHHHH--------------------------------------HHHHT----
T ss_pred --------------------------HHHHHHH--------------------------------------HHHHc----
Confidence 0000000 00011
Q ss_pred CCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHH
Q 004187 257 RIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAK 336 (770)
Q Consensus 257 ~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~ 336 (770)
+..+.++..|++++...|.++.+|..++.++...|++++|+..|++++...|++...|+.++.++...|++++|.
T Consensus 134 -----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 134 -----ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp -----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred -----cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 234566778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCcHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCC
Q 004187 337 KLYESLLTDSVNTTALAHIQF------------IRFLRRTEGVEAARKYFLDARKSPNFTY----HVYVAYALMAFCQDK 400 (770)
Q Consensus 337 ~iye~al~~~p~~~~~~w~~~------------~~~~~r~~~~e~A~~~f~~Al~~~~~~~----~~yi~~a~le~~~~g 400 (770)
..|+++++..|. ...+|..+ +..+.+.|++++|..+|+++++..+... .++..++.+.... |
T Consensus 209 ~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~ 286 (359)
T 3ieg_A 209 SEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD-E 286 (359)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc-c
Confidence 999999999887 55655433 6678889999999999999998766654 3455677777775 9
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Q 004187 401 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQ 467 (770)
Q Consensus 401 ~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~ 467 (770)
++++|..+|+++++..|+++.+|..++.++...|++++|...|+++++..| ++..+|..+.....
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 287 KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE--NDQQIREGLEKAQR 351 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988 66677766665544
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.6e-21 Score=217.99 Aligned_cols=395 Identities=11% Similarity=0.016 Sum_probs=290.2
Q ss_pred hhhhccccCCCCCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-
Q 004187 10 SEENITGVADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL- 87 (770)
Q Consensus 10 ~e~~i~~~~~P~d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p- 87 (770)
+++.+. .+| |..+|..++..+ ..+++++|...|++++..+|.+...|..++..+.+.|++++|...|++++...|
T Consensus 29 ~~~al~--~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 29 YNWALE--LKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp HHHHHH--HCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHHHh--cCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 455666 788 799999998855 557999999999999999999999999999999999999999999999999987
Q ss_pred ChHHHHHHHHHHHHHhhccCcchHHHHHHHHH----------------------------------HHHHhcCCC-----
Q 004187 88 QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFD----------------------------------FMLSHVGSD----- 128 (770)
Q Consensus 88 ~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e----------------------------------~aL~~ig~d----- 128 (770)
+......++........ ...+.+.+. ..+......
T Consensus 106 ~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (514)
T 2gw1_A 106 NDASIEPMLERNLNKQA------MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179 (514)
T ss_dssp CGGGTHHHHHHHHHHHH------HHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSS
T ss_pred ccchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHH
Confidence 33333333333222111 011111110 000000000
Q ss_pred ---CCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHc-----c---cccc-----HHHHHHHHHHHHHHhhHh
Q 004187 129 ---ISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV-----T---PTHH-----VEQLWKDYENFENSVSRQ 192 (770)
Q Consensus 129 ---p~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~-----~---P~~~-----~~~l~~~y~~fe~~~~~~ 192 (770)
|.....|......... +...++++.|...|++++. . |... ....|...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 243 (514)
T 2gw1_A 180 YDESNEADKELMNGLSNLY------KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT---------- 243 (514)
T ss_dssp CCSSCHHHHHHHHHHHHHS------SCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH----------
T ss_pred hcCCcHHHHHHHHHHHHHH------hhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH----------
Confidence 1112333333322111 0015788999999999998 3 3321 01111110
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHH
Q 004187 193 LAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYE 272 (770)
Q Consensus 193 la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye 272 (770)
..+....+++.+|...+++ .+. ..|. ...|..+....... +..+.++..|+
T Consensus 244 ---~~~~~~~~~~~~A~~~~~~------~l~-----~~~~--------~~~~~~l~~~~~~~-------~~~~~A~~~~~ 294 (514)
T 2gw1_A 244 ---GIFKFLKNDPLGAHEDIKK------AIE-----LFPR--------VNSYIYMALIMADR-------NDSTEYYNYFD 294 (514)
T ss_dssp ---HHHHHHSSCHHHHHHHHHH------HHH-----HCCC--------HHHHHHHHHHHHTS-------SCCTTGGGHHH
T ss_pred ---HHHHHHCCCHHHHHHHHHH------HHh-----hCcc--------HHHHHHHHHHHHHC-------CCHHHHHHHHH
Confidence 1111235677888877765 221 1232 13454444432221 12334567899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHH
Q 004187 273 QCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTAL 352 (770)
Q Consensus 273 ~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~ 352 (770)
+++...|.+..+|..++.++...|++++|+..|++++...|.+..+|+.++.++...|++++|..+|+++++..|. ...
T Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 373 (514)
T 2gw1_A 295 KALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APE 373 (514)
T ss_dssp HHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSH
T ss_pred HHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887 678
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHhCCCcHHHH
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFT------YHVYVAYALMAFC---QDKDPKLAHNVFEAGLKRFMHEPAYI 423 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~------~~~yi~~a~le~~---~~g~~~~A~~ife~alk~~p~~~~~~ 423 (770)
+|..++..+.+.|++++|..+|+++++..+.. ..+|..++.+... . |++++|...|+++++..|+++.+|
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHhCcccHHHH
Confidence 99999999999999999999999999754443 3388888888777 5 999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHH
Q 004187 424 LEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRF 462 (770)
Q Consensus 424 l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~ 462 (770)
..++.++...|++++|...|+++++..| ++..+|...
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~ 489 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADLAR--TMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS--SHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcc--ccHHHHHHH
Confidence 9999999999999999999999999988 555666544
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.7e-20 Score=214.03 Aligned_cols=394 Identities=11% Similarity=0.032 Sum_probs=280.8
Q ss_pred hhhhhccccCCCCCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 004187 9 ESEENITGVADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL 87 (770)
Q Consensus 9 e~e~~i~~~~~P~d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p 87 (770)
.+++.+. .+|.+..+|..++..+ ..+++++|...|++++..+|++...|..++..+...|++++|...|+ ++...|
T Consensus 47 ~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~ 123 (537)
T 3fp2_A 47 YYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNG 123 (537)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---
T ss_pred HHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCC
Confidence 3556677 8999999999998865 55799999999999999999999999999999999999999999996 777776
Q ss_pred C-hHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCC-----CCCCh-----------------------------
Q 004187 88 Q-VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGS-----DISSG----------------------------- 132 (770)
Q Consensus 88 ~-~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~-----dp~s~----------------------------- 132 (770)
+ ...|.. .+.. .+. ...+...|+.++...+. .|...
T Consensus 124 ~~~~~~~~--~~~~-~~~------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (537)
T 3fp2_A 124 DFDGASIE--PMLE-RNL------NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYA 194 (537)
T ss_dssp ----------CHHH-HHH------HHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHH
T ss_pred CCChHHHH--HHHH-HHH------HHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHH
Confidence 3 233321 1111 111 23455555544432100 00000
Q ss_pred hhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHH
Q 004187 133 PIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAV 211 (770)
Q Consensus 133 ~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v 211 (770)
.++..+..+.... ........++++.|..+|++++.. |.+. .+|..+..... ....+....+++.+|...
T Consensus 195 ~~~~~l~~~~~~~-~~~~~~a~~~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~~~------~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 195 LLSDALQRLYSAT-DEGYLVANDLLTKSTDMYHSLLSANTVDD--PLRENAALALC------YTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHHHHHHHHC--CCCH--HHHHHHHHHHH------HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHCCCcc--hhhHHHHHHHH------HHHHHHHhcccHHHHHHH
Confidence 0222222221110 001122346789999999999987 6542 12211111000 011122235677788877
Q ss_pred HHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004187 212 YRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW 291 (770)
Q Consensus 212 ~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~ 291 (770)
+++. +. ..|. ...|..+...... .+..+.++..|++++..+|.++.+|..++.+
T Consensus 266 ~~~~------~~-----~~~~--------~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 266 LQES------IN-----LHPT--------PNSYIFLALTLAD-------KENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319 (537)
T ss_dssp HHHH------HH-----HCCC--------HHHHHHHHHHTCC-------SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHH------Hh-----cCCC--------chHHHHHHHHHHH-------hcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 7652 21 1232 1244433332211 2345778899999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHH
Q 004187 292 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR 371 (770)
Q Consensus 292 l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~ 371 (770)
+...|++++|+..|++++...|++..+|+.++.++...|++++|..+|+++++..|. ...+|..++..+...|++++|+
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 6789999999999999999999
Q ss_pred HHHHHHHcCCCC------CHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 004187 372 KYFLDARKSPNF------TYHVYVAYALMAFCQD----------KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLND 435 (770)
Q Consensus 372 ~~f~~Al~~~~~------~~~~yi~~a~le~~~~----------g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~ 435 (770)
..|+++++..+. ....+...+.+... . |++++|...|+++++..|+++.+|..++.++...|+
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILAR-QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH-HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH-HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 999999874321 22334455555443 4 899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 004187 436 DRNIRALFERALSSLP 451 (770)
Q Consensus 436 ~~~Ar~lferaL~~~p 451 (770)
+++|...|+++++..|
T Consensus 478 ~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 478 IDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999999887
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=6.9e-20 Score=204.39 Aligned_cols=335 Identities=11% Similarity=-0.002 Sum_probs=268.7
Q ss_pred hhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHH
Q 004187 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRK 116 (770)
Q Consensus 38 i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~ 116 (770)
...+...+.+++...|.+...|..++..+.+.|++++|..+|++++...| +...|...+......++ .+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~------~~~A~~ 81 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK------SKAALP 81 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------HHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCC------HHHHHH
Confidence 34466778889999999999999999999999999999999999999998 68899998888877664 689999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhHhHHH
Q 004187 117 AFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQLAK 195 (770)
Q Consensus 117 ~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~~la~ 195 (770)
.|+++++. +|....+|..++..+. ..++++.|...|++++.. |.....
T Consensus 82 ~~~~al~~---~p~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~------------------- 130 (450)
T 2y4t_A 82 DLTKVIQL---KMDFTAARLQRGHLLL---------KQGKLDEAEDDFKKVLKSNPSENEE------------------- 130 (450)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHH---------HTTCHHHHHHHHHHHHTSCCCHHHH-------------------
T ss_pred HHHHHHhc---CCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCChhh-------------------
Confidence 99988886 5666778887777654 356778888888888766 432100
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHH
Q 004187 196 GLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCL 275 (770)
Q Consensus 196 ~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL 275 (770)
...|..+.....
T Consensus 131 ---------------------------------------------~~~~~~l~~~~~----------------------- 142 (450)
T 2y4t_A 131 ---------------------------------------------KEAQSQLIKSDE----------------------- 142 (450)
T ss_dssp ---------------------------------------------HHHHHHHHHHHH-----------------------
T ss_pred ---------------------------------------------HHHHHHHHHHHH-----------------------
Confidence 001111111000
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHH
Q 004187 276 MYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355 (770)
Q Consensus 276 ~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~ 355 (770)
...++..+..+...|++++|+..|++++...|.+..+|+.++.++...|++++|..+|+++++..|. ...+|.
T Consensus 143 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 215 (450)
T 2y4t_A 143 ------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFY 215 (450)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHH
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 0123455667788999999999999999999999999999999999999999999999999999887 789999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCCHHHHHHHHHHHHHhCCCcHH--
Q 004187 356 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAY------------ALMAFCQDKDPKLAHNVFEAGLKRFMHEPA-- 421 (770)
Q Consensus 356 ~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~------------a~le~~~~g~~~~A~~ife~alk~~p~~~~-- 421 (770)
.++..+...|++++|+.+|+++++..+.....+..+ +.+.... |++++|..+|+++++..|+++.
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~ 294 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD-GRYTDATSKYESVMKTEPSIAEYT 294 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCcchHHH
Confidence 999999999999999999999998877766666554 6666665 9999999999999999999854
Q ss_pred --HHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 422 --YILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 422 --~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
++...+.++...|++++|..+|++++...| ++..+|...+......|+.+.+...++++.+..|
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 677889999999999999999999999888 6678999999999999999999999999999888
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=5.3e-19 Score=189.54 Aligned_cols=318 Identities=10% Similarity=0.001 Sum_probs=265.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChh
Q 004187 55 AAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGP 133 (770)
Q Consensus 55 ~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~ 133 (770)
+.+.|...+..+...|++++|..+|++++...| +...|...+......++ .+.+.+.|++++.. +|....
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~------~~~A~~~~~~~~~~---~~~~~~ 72 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK------SKAALPDLTKVIAL---KMDFTA 72 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHH---CTTCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccC------HHHHHHHHHHHHHh---CCCcch
Confidence 567899999999999999999999999999998 68999999998888775 68999999988876 566667
Q ss_pred hHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHH
Q 004187 134 IWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVY 212 (770)
Q Consensus 134 lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~ 212 (770)
+|........ ..++.+.|...|++++.. |....
T Consensus 73 ~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~------------------------------------- 106 (359)
T 3ieg_A 73 ARLQRGHLLL---------KQGKLDEAEDDFKKVLKSNPSEQE------------------------------------- 106 (359)
T ss_dssp HHHHHHHHHH---------HHTCHHHHHHHHHHHHTSCCCHHH-------------------------------------
T ss_pred HHHHHHHHHH---------HcCChHHHHHHHHHHHhcCCcccC-------------------------------------
Confidence 7877776653 356778888888888776 42100
Q ss_pred HHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004187 213 RERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWN 292 (770)
Q Consensus 213 k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l 292 (770)
....|..+..... ...++..+..+
T Consensus 107 ---------------------------~~~~~~~l~~~~~-----------------------------~~~~~~~a~~~ 130 (359)
T 3ieg_A 107 ---------------------------EKEAESQLVKADE-----------------------------MQRLRSQALDA 130 (359)
T ss_dssp ---------------------------HHHHHHHHHHHHH-----------------------------HHHHHHHHHHH
T ss_pred ---------------------------hHHHHHHHHHHHH-----------------------------HHHHHHHHHHH
Confidence 0001111110000 12356678889
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHH
Q 004187 293 AKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK 372 (770)
Q Consensus 293 ~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~ 372 (770)
...|++++|+.+|++++...|.+..+|+.++.++...|++++|...|+++++..|. ...+|..++..+...|++++|..
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 78999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHH------------HHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHhcCCh
Q 004187 373 YFLDARKSPNFTYHVYVA------------YALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY----ILEYADFLSRLNDD 436 (770)
Q Consensus 373 ~f~~Al~~~~~~~~~yi~------------~a~le~~~~g~~~~A~~ife~alk~~p~~~~~----~l~ya~~l~~~g~~ 436 (770)
.|+++++..+....++.. .|.+.... |++++|..+|+++++..|+++.+ +..++.++...|++
T Consensus 210 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 210 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD-GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH
Confidence 999999987776665443 35555664 99999999999999999998754 55688999999999
Q ss_pred hHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 437 RNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 437 ~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
++|..+|+++++..| ++..+|..++......|+.+.+...++++.+..|
T Consensus 289 ~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 289 VEAIRICSEVLQMEP--DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999888 6688999999999999999999999999999888
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.3e-19 Score=192.53 Aligned_cols=300 Identities=12% Similarity=0.026 Sum_probs=218.4
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHh
Q 004187 46 EQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSH 124 (770)
Q Consensus 46 e~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ 124 (770)
...+...|.+..++...+..+...|++++|..+|++++...| +...|..++......++ .+.+...|++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~------~~~A~~~~~~~~~~ 85 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK------ANELFYLSHKLVDL 85 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTC------HHHHHHHHHHHHHH
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhh------HHHHHHHHHHHHHh
Confidence 355666777778888888888888888888888888888777 56666666665555443 45566666655543
Q ss_pred cCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHH
Q 004187 125 VGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSK 204 (770)
Q Consensus 125 ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~ 204 (770)
+|.+..+|.........
T Consensus 86 ---~~~~~~~~~~l~~~~~~------------------------------------------------------------ 102 (330)
T 3hym_B 86 ---YPSNPVSWFAVGCYYLM------------------------------------------------------------ 102 (330)
T ss_dssp ---CTTSTHHHHHHHHHHHH------------------------------------------------------------
T ss_pred ---CcCCHHHHHHHHHHHHH------------------------------------------------------------
Confidence 33332333322211100
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHH
Q 004187 205 YTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDI 284 (770)
Q Consensus 205 y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~ 284 (770)
.+ ...+.++..|++++...|.+..+
T Consensus 103 -----------------------------------------------~~--------~~~~~A~~~~~~a~~~~~~~~~~ 127 (330)
T 3hym_B 103 -----------------------------------------------VG--------HKNEHARRYLSKATTLEKTYGPA 127 (330)
T ss_dssp -----------------------------------------------SC--------SCHHHHHHHHHHHHTTCTTCTHH
T ss_pred -----------------------------------------------hh--------hhHHHHHHHHHHHHHhCCccHHH
Confidence 00 01223445677777778888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~ 364 (770)
|..++.++...|++++|+..|++++...|++...|+.++.++...|++++|...|+++++..|. ...+|..++..+...
T Consensus 128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~ 206 (330)
T 3hym_B 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQN 206 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHc
Confidence 8888888888999999999999999988888888888888888889999999999999988887 678888888888888
Q ss_pred cCHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 004187 365 EGVEAARKYFLDARKSP---------NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLND 435 (770)
Q Consensus 365 ~~~e~A~~~f~~Al~~~---------~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~ 435 (770)
|++++|..+|+++++.. +....+|..+|.+.... |++++|...|+++++..|+++.+|..++.++...|+
T Consensus 207 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL-KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 99999999998888642 33457888888887765 899999999999999999988999999999999999
Q ss_pred hhHHHHHHHHHHhCCCchhHHHHHHHHHH-HHHHcCCHH
Q 004187 436 DRNIRALFERALSSLPPEESIEVWKRFTQ-FEQMYGDLD 473 (770)
Q Consensus 436 ~~~Ar~lferaL~~~p~~~~~~lw~~~~~-fE~~~Gd~~ 473 (770)
+++|...|+++++..| ++...|..+.. ++...|+.+
T Consensus 286 ~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 286 FENAVDYFHTALGLRR--DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHTTTTTCS--CCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHccCC--CchHHHHHHHHHHHHHhCchh
Confidence 9999999999998887 55666666665 345667653
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=2e-19 Score=191.03 Aligned_cols=302 Identities=12% Similarity=0.082 Sum_probs=227.5
Q ss_pred CchhhhhccccCCCCCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 004187 7 EPESEENITGVADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLI 85 (770)
Q Consensus 7 ~~e~e~~i~~~~~P~d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~ 85 (770)
+.+..+.+. ..|.+.+.+..++..+ ..+++++|..+|++++...|.+...|..++..+...|++++|..+|++++..
T Consensus 8 ~~~~~~~~~--~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 85 (330)
T 3hym_B 8 ETVIPESVD--GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85 (330)
T ss_dssp --------------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHh--hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444556666 7888888888887744 5679999999999999999999999999999999999999999999999999
Q ss_pred cC-ChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHH
Q 004187 86 CL-QVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAY 164 (770)
Q Consensus 86 ~p-~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vy 164 (770)
.| +...|...+......++ ..+.+.+.|++++.. +|....+|..+...+.. .+
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~-----~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~---------~~--------- 139 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGH-----KNEHARRYLSKATTL---EKTYGPAWIAYGHSFAV---------ES--------- 139 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCS-----CHHHHHHHHHHHHTT---CTTCTHHHHHHHHHHHH---------HT---------
T ss_pred CcCCHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHH---------cc---------
Confidence 98 68899888888776551 256777777766653 44433444433322110 11
Q ss_pred HHHHccccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHH
Q 004187 165 QRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAW 244 (770)
Q Consensus 165 qral~~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw 244 (770)
T Consensus 140 -------------------------------------------------------------------------------- 139 (330)
T 3hym_B 140 -------------------------------------------------------------------------------- 139 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004187 245 KRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAE 324 (770)
Q Consensus 245 ~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~ 324 (770)
.++.++..|++++...|.+..+|+.++.++...|++++|...|++++...|++..+|+.++.
T Consensus 140 ------------------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 201 (330)
T 3hym_B 140 ------------------EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV 201 (330)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred ------------------CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 11233446677777777777888888888888888888888888888888888888888888
Q ss_pred HHHHhCcHHHHHHHHHHHhccC---------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004187 325 LEESRGAIAAAKKLYESLLTDS---------VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMA 395 (770)
Q Consensus 325 ~~~~~g~~e~A~~iye~al~~~---------p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le 395 (770)
++...|++++|...|++++... +. ...+|..++..+...|++++|+..|+++++..+....+|..++.+.
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 280 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH 280 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 8888888888888888888764 22 3568888888888888888888888888887777778888888887
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HhcCCh
Q 004187 396 FCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFL-SRLNDD 436 (770)
Q Consensus 396 ~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l-~~~g~~ 436 (770)
... |++++|.+.|+++++..|+++..+..++..+ ...|+.
T Consensus 281 ~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 281 SLM-GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHH-TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHh-ccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 775 8888899999888888888888888888766 444543
No 22
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.5e-20 Score=199.04 Aligned_cols=186 Identities=12% Similarity=0.117 Sum_probs=171.4
Q ss_pred hHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 265 KRIIFTYEQCLM-YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEM-LRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 265 ~r~~~~ye~aL~-~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~-lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
+.++.+|++++. ..|.+..+|+.++.++...|++++|+.+|+++++..|.+.. +|+.++.++.+.|++++|+.+|+++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 567789999999 69999999999999999999999999999999999999886 9999999999999999999999999
Q ss_pred hccCCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh---CC-
Q 004187 343 LTDSVNTTALAHIQFIRFLRR-TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR---FM- 417 (770)
Q Consensus 343 l~~~p~~~~~~w~~~~~~~~r-~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~---~p- 417 (770)
++..|. ...+|+.++.++.. .|+++.|+.+|+++++..+....+|..++.++... |+.++|+.+|+++++. .|
T Consensus 161 ~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhccCCCHH
Confidence 999887 57889888877654 69999999999999998888899999999998875 9999999999999996 34
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004187 418 HEPAYILEYADFLSRLNDDRNIRALFERALSSLPP 452 (770)
Q Consensus 418 ~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~ 452 (770)
+...+|..|+.++...|+.++|+.+++++++.+|.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 37889999999999999999999999999999983
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.6e-17 Score=186.70 Aligned_cols=210 Identities=15% Similarity=0.082 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---------------
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR--------------- 329 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~--------------- 329 (770)
+.+...|++++...|.+..+|..+|.++...|++++|+..|+++++..|++..+|..+|.++...
T Consensus 230 ~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~ 309 (472)
T 4g1t_A 230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309 (472)
T ss_dssp CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CH
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45567888888888999999999999999999999999999999999999888888888776432
Q ss_pred ----CcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCCH
Q 004187 330 ----GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTY---HVYVAYALMAFCQDKDP 402 (770)
Q Consensus 330 ----g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~---~~yi~~a~le~~~~g~~ 402 (770)
+.++.|...|++++...|. ...+|..++..+...|++++|+..|+++++..+... .++..++.+.....|+.
T Consensus 310 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 310 RKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 3356788888888888877 567788888888888889999999988887654422 34555655544345888
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004187 403 KLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRR 482 (770)
Q Consensus 403 ~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~ 482 (770)
++|+..|+++++..|++..... ....+..++++++...| .....|..+.......|+.+.+.+.++++
T Consensus 389 ~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p--~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 389 DKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNG--ADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC---CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888887654321 12345667778888777 55667777777777788888888888888
Q ss_pred HHhcc
Q 004187 483 KEALS 487 (770)
Q Consensus 483 ~~~~~ 487 (770)
++.-+
T Consensus 457 Le~~~ 461 (472)
T 4g1t_A 457 LESGS 461 (472)
T ss_dssp -----
T ss_pred HhcCC
Confidence 77554
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1.7e-18 Score=187.49 Aligned_cols=301 Identities=11% Similarity=-0.042 Sum_probs=221.5
Q ss_pred ChhhHHH-HHHHHHHhCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHhhccCcch
Q 004187 37 PVAQAAP-IYEQLLSVFPTA----AKFWKQYVEAYMAVNNDDATKQLFSRCLLICL-QVPLWRCYIRFIRKVYEKKGTEG 110 (770)
Q Consensus 37 ~i~~Ar~-~ye~~l~~fP~~----~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-~~~lW~~y~~~~~~~~~~~~~~~ 110 (770)
++++|.. .|++++...|.+ ...|...+..+.+.|++++|..+|++++...| +...|...+......++
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------ 113 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ------ 113 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC------
Confidence 5677777 788777777765 35588888888888888888888888888887 57788877777776554
Q ss_pred HHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHh
Q 004187 111 QEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSV 189 (770)
Q Consensus 111 ~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~ 189 (770)
.+.+.+.|++++.. +|.+..+|..++.... ..++.+.|...|++++.. |....
T Consensus 114 ~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~-------------- 167 (368)
T 1fch_A 114 ELLAISALRRCLEL---KPDNQTALMALAVSFT---------NESLQRQACEILRDWLRYTPAYAH-------------- 167 (368)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH---------HTTCHHHHHHHHHHHHHTSTTTGG--------------
T ss_pred HHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCcCcHH--------------
Confidence 57888888877775 5556667776666543 245566677777666654 32210
Q ss_pred hHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHH
Q 004187 190 SRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIF 269 (770)
Q Consensus 190 ~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~ 269 (770)
.|...... ..
T Consensus 168 -----------------------------------------------------~~~~~~~~-~~---------------- 177 (368)
T 1fch_A 168 -----------------------------------------------------LVTPAEEG-AG---------------- 177 (368)
T ss_dssp -----------------------------------------------------GCC------------------------
T ss_pred -----------------------------------------------------HHHHHHHH-hh----------------
Confidence 00000000 00
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD--SEMLRYAFAELEESRGAIAAAKKLYESLLTDSV 347 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~--s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p 347 (770)
.......+..++.++ ..|++++|+..|++++...|+ +..+|+.++.++...|++++|...|++++...|
T Consensus 178 --------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 248 (368)
T 1fch_A 178 --------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248 (368)
T ss_dssp ----------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 000001122334444 678889999999999999998 788899999999999999999999999999888
Q ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc--------
Q 004187 348 NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE-------- 419 (770)
Q Consensus 348 ~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~-------- 419 (770)
. ...+|..++..+...|++++|+.+|+++++..+....+|..++.+.... |++++|...|+++++..|++
T Consensus 249 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 249 N-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHTC------CC
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 7 6788999999999999999999999999888777788888888887775 99999999999999988877
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004187 420 ---PAYILEYADFLSRLNDDRNIRALFERALSSL 450 (770)
Q Consensus 420 ---~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~ 450 (770)
..+|..++..+..+|++++|..++++++..+
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 7899999999999999999999998887653
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=2e-18 Score=174.56 Aligned_cols=199 Identities=15% Similarity=0.114 Sum_probs=156.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 279 p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
|.++++|+.++..+...|++++|+..|+++++..|++..+|+.+|.++...|++++|...|+++++..|. ...+|..++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 6778888888888888888888888888888888888888888888888888888888888888888887 678888888
Q ss_pred HHHHHh-----------cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004187 359 RFLRRT-----------EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA 427 (770)
Q Consensus 359 ~~~~r~-----------~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya 427 (770)
..+... |++++|+..|+++++..|....+|..++.++... |++++|+..|+++++.. +++.+|..++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL-GERDKAEASLKQALALE-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence 888888 8888888888888888777788888888887765 88888888888888888 8888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004187 428 DFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRR 482 (770)
Q Consensus 428 ~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~ 482 (770)
.++...|++++|...|+++++..| ++..+|..++.+....|+.+.+...++++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888888888888888888877 56677777777777788887776665554
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.7e-18 Score=185.87 Aligned_cols=221 Identities=14% Similarity=0.068 Sum_probs=198.7
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH----------------HHHHHHHH
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRY----------------AFAELEES 328 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~----------------~~a~~~~~ 328 (770)
+.++..|++++...|.+..+|..++.++...|++++|+..|++++...|++...+. .++.++ .
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 45567889999999999999999999999999999999999999999998877664 355555 8
Q ss_pred hCcHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004187 329 RGAIAAAKKLYESLLTDSVNT-TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN 407 (770)
Q Consensus 329 ~g~~e~A~~iye~al~~~p~~-~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ 407 (770)
.|++++|..+|+++++..|.. ...+|..++..+.+.|++++|+.+|+++++..+....+|..++.+.... |++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-CCHHHHHH
Confidence 899999999999999998863 4789999999999999999999999999998888899999999998775 99999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCch---------hHHHHHHHHHHHHHHcCCHHHHHHH
Q 004187 408 VFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPE---------ESIEVWKRFTQFEQMYGDLDSTLKV 478 (770)
Q Consensus 408 ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~---------~~~~lw~~~~~fE~~~Gd~~~~~k~ 478 (770)
.|+++++..|+++.++..++.++..+|++++|...|++++...|.. ....+|..++......|+.+.+..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 9999999999999999999999999999999999999999976622 1178999999999999999999999
Q ss_pred HHHHHHhcc
Q 004187 479 EQRRKEALS 487 (770)
Q Consensus 479 ~~R~~~~~~ 487 (770)
.+|..+.+.
T Consensus 353 ~~~~l~~~~ 361 (368)
T 1fch_A 353 DARDLSTLL 361 (368)
T ss_dssp HTTCHHHHH
T ss_pred HHHHHHHHH
Confidence 888887776
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=4.2e-18 Score=184.91 Aligned_cols=222 Identities=13% Similarity=0.064 Sum_probs=200.0
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
.++.++..|++++..+|.+..+|+.++.++...|++++|+..|++++...|++...|+.++.++...|++++|..+|+++
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNW 159 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcHHHHH----------HHHHHHHHhcCHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004187 343 LTDSVNTTALAHI----------QFIRFLRRTEGVEAARKYFLDARKSPNF--TYHVYVAYALMAFCQDKDPKLAHNVFE 410 (770)
Q Consensus 343 l~~~p~~~~~~w~----------~~~~~~~r~~~~e~A~~~f~~Al~~~~~--~~~~yi~~a~le~~~~g~~~~A~~ife 410 (770)
++..|. ...+|. .++..+...|++++|+.+|+++++..+. ...+|..++.++... |++++|..+|+
T Consensus 160 l~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 237 (365)
T 4eqf_A 160 IKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS-GEFNRAIDAFN 237 (365)
T ss_dssp HHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 998875 334444 3478888899999999999999998777 789999999998776 99999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 004187 411 AGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 488 (770)
Q Consensus 411 ~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~ 488 (770)
++++..|+++.+|..++..+...|++++|..+|+++++..| ++..+|..++......|+.+.+...++++.+..|.
T Consensus 238 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999988 66889999999999999999999999999999983
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=3.8e-18 Score=185.24 Aligned_cols=223 Identities=12% Similarity=0.043 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH----------HHHHHHhCcHH
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAF----------AELEESRGAIA 333 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~----------a~~~~~~g~~e 333 (770)
++.++..|++++..+|.+..+|..++.++...|++++|+..|+++++..|++...|..+ +.++...|+++
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHH
Confidence 34566789999999999999999999999999999999999999999999877666554 88888999999
Q ss_pred HHHHHHHHHhccCCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004187 334 AAKKLYESLLTDSVNT-TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAG 412 (770)
Q Consensus 334 ~A~~iye~al~~~p~~-~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~a 412 (770)
+|..+|+++++..|.. ...+|..++..+.+.|++++|+.+|+++++..+....+|..++.++... |++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG-DRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 9999999999998863 4789999999999999999999999999998888899999999998775 9999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchh----------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004187 413 LKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE----------SIEVWKRFTQFEQMYGDLDSTLKVEQRR 482 (770)
Q Consensus 413 lk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~----------~~~lw~~~~~fE~~~Gd~~~~~k~~~R~ 482 (770)
++..|+++.+|..++.++..+|++++|..+|+++++..|... ...+|..+.......|..+.+.++.++.
T Consensus 274 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 274 LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999999999999999999999999999999999999765211 3678999999888999998888877775
Q ss_pred HHhcc
Q 004187 483 KEALS 487 (770)
Q Consensus 483 ~~~~~ 487 (770)
...+.
T Consensus 354 l~~~~ 358 (365)
T 4eqf_A 354 LDVLL 358 (365)
T ss_dssp CGGGT
T ss_pred HHHHH
Confidence 55554
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=1.3e-17 Score=168.52 Aligned_cols=183 Identities=14% Similarity=0.011 Sum_probs=160.5
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-----------Cc
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR-----------GA 331 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~-----------g~ 331 (770)
.++.++..|++++..+|.++.+|+.++.++...|++++|+..|+++++..|++...|+.++.++... |+
T Consensus 20 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~ 99 (217)
T 2pl2_A 20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGY 99 (217)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccC
Confidence 4567889999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004187 332 IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEA 411 (770)
Q Consensus 332 ~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~ 411 (770)
+++|...|+++++..|. ...+|..++..+...|++++|+..|+++++.. ....++..+|.++... |++++|...|++
T Consensus 100 ~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 176 (217)
T 2pl2_A 100 LEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSM-GRLDEALAQYAK 176 (217)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 99999999999999998 78999999999999999999999999999988 7899999999998776 999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 412 GLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 412 alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
+++..|+++.++..++.++...|++++|...|+++-.
T Consensus 177 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 177 ALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998754
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=7.4e-17 Score=177.62 Aligned_cols=221 Identities=10% Similarity=-0.030 Sum_probs=196.0
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS-IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~-~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
.+++++..|++++..+|.+..+|+..+.++...|+ +++|+..|++++..+|++..+|+.++.++...|++++|...|++
T Consensus 112 ~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~k 191 (382)
T 2h6f_A 112 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIAD 191 (382)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 46788999999999999999999999999999997 99999999999999999999999999999999999999999999
Q ss_pred HhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHhC
Q 004187 342 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLA-----HNVFEAGLKRF 416 (770)
Q Consensus 342 al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A-----~~ife~alk~~ 416 (770)
+|+.+|. +..+|..++..+.+.|++++|+..|+++++..+....+|..++.++....|..++| ...|+++++..
T Consensus 192 al~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 192 ILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 9999998 89999999999999999999999999999999999999999999987744665777 59999999999
Q ss_pred CCcHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HH
Q 004187 417 MHEPAYILEYADFLSRLN--DDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG--------D-LDSTLKVEQRR-KE 484 (770)
Q Consensus 417 p~~~~~~l~ya~~l~~~g--~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~G--------d-~~~~~k~~~R~-~~ 484 (770)
|++..+|..++.++...| ++++|...++++ ...| ++..++..++.+....| + .+.+.++++++ .+
T Consensus 271 P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p--~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 271 PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH--SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC--CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC--CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999888 689999999887 6666 55666666666665553 2 46777777777 56
Q ss_pred hcc
Q 004187 485 ALS 487 (770)
Q Consensus 485 ~~~ 487 (770)
..|
T Consensus 348 ~DP 350 (382)
T 2h6f_A 348 KDT 350 (382)
T ss_dssp TCG
T ss_pred hCc
Confidence 665
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=7.3e-16 Score=173.12 Aligned_cols=178 Identities=13% Similarity=0.082 Sum_probs=133.3
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS-------------------GSIDAAIKVFQRALKALPDSEMLRYAFA 323 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~-------------------g~~e~A~~v~erAi~~~P~s~~lw~~~a 323 (770)
....++..|++++...|.+..+|..++.++... +..++|...|++++...|.+...|+.+|
T Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg 341 (472)
T 4g1t_A 262 EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILA 341 (472)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHH
Confidence 345667788888888888888888888776542 2367899999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHHHhccCCCCc--HHHHHHHHHHH-HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004187 324 ELEESRGAIAAAKKLYESLLTDSVNTT--ALAHIQFIRFL-RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK 400 (770)
Q Consensus 324 ~~~~~~g~~e~A~~iye~al~~~p~~~--~~~w~~~~~~~-~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g 400 (770)
.++...|++++|...|+++++..+... ..++..++.+. ...+++++|+..|+++++..+...... +
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~-----------~ 410 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE-----------K 410 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH-----------H
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH-----------H
Confidence 999999999999999999999877521 23566777654 357899999999999999877644221 2
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 401 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 401 ~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
..+.+.++++++++.+|+++..|...+.++..+|++++|...|++||+.-+
T Consensus 411 ~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345567889999999999999999999999999999999999999998655
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.75 E-value=1.5e-16 Score=155.14 Aligned_cols=171 Identities=14% Similarity=0.037 Sum_probs=163.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 279 p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
..++.+|+.+|..+...|++++|++.|+++++.+|++..+|+.+|.++...|++++|...+++++...+. ...+|..++
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999998 789999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhH
Q 004187 359 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 438 (770)
Q Consensus 359 ~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~ 438 (770)
..+...++++.|...+.++++..+....++..+|.+.... |++++|.+.|+++++..|+++.+|...+.++..+|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM-GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-CCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999888899999999998775 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 004187 439 IRALFERALSSLP 451 (770)
Q Consensus 439 Ar~lferaL~~~p 451 (770)
|...|++||+..|
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999999877
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.1e-16 Score=169.39 Aligned_cols=221 Identities=12% Similarity=0.065 Sum_probs=198.1
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH--------------HH-HHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAF--------------AE-LEE 327 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~--------------a~-~~~ 327 (770)
..+.++..|++++...|.+..+|..++.++...|++++|++.|++++...|.+..++..+ +. ++.
T Consensus 70 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 70 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTT
T ss_pred CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 456788899999999999999999999999999999999999999999999988777766 55 567
Q ss_pred HhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004187 328 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN 407 (770)
Q Consensus 328 ~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ 407 (770)
..|++++|..+|+++++..|. ...+|..++..+...|++++|+.+|+++++..+....+|..++.+.... |++++|..
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~ 227 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG-NRPQEALD 227 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHH
Confidence 789999999999999999987 7899999999999999999999999999998888889999999988775 99999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHHcCCHHHH
Q 004187 408 VFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE------------SIEVWKRFTQFEQMYGDLDST 475 (770)
Q Consensus 408 ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~------------~~~lw~~~~~fE~~~Gd~~~~ 475 (770)
+|+++++..|+++.+|..++.++..+|++++|..+|++++...| . ...+|..++......|+.+.+
T Consensus 228 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 228 AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV--GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT--TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--ccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999877 3 678999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 004187 476 LKVEQRRKEALS 487 (770)
Q Consensus 476 ~k~~~R~~~~~~ 487 (770)
..+++++.+.++
T Consensus 306 ~~~~~~~l~~~~ 317 (327)
T 3cv0_A 306 ELTYAQNVEPFA 317 (327)
T ss_dssp HHHTTCCSHHHH
T ss_pred HHHHHHHHHhcc
Confidence 998888777777
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=1.8e-16 Score=167.78 Aligned_cols=221 Identities=12% Similarity=0.024 Sum_probs=200.1
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
.++.++..|++++...|.+..+|+.++.++...|++++|...|++++...|++..+|..++.++...|++++|...|+++
T Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 115 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcHHHHHHH--------------HH-HHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004187 343 LTDSVNTTALAHIQF--------------IR-FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN 407 (770)
Q Consensus 343 l~~~p~~~~~~w~~~--------------~~-~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ 407 (770)
+...|. ...++..+ +. .+...|++++|+.+|+++++..+....++..++.+.... |++++|..
T Consensus 116 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~ 193 (327)
T 3cv0_A 116 LLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS-NNYDSAAA 193 (327)
T ss_dssp HHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-ccHHHHHH
Confidence 999887 44555544 44 466788999999999999998888889999999987775 99999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 408 VFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 408 ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+|+++++..|+++.+|..++.++...|++++|..+|+++++..| .+..+|..++......|+.+.+.+.++++.+..|
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 194 NLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP--GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999887 5678899999999999999999999999999988
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.74 E-value=9.5e-17 Score=162.71 Aligned_cols=202 Identities=9% Similarity=0.074 Sum_probs=181.1
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
++.++..|++++...|.+..+|+.++.++...|++++|+..|++++...|.+..+|+.++.++...|++++|..+|++++
T Consensus 39 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 118 (243)
T 2q7f_A 39 YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118 (243)
T ss_dssp ---CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHH
Q 004187 344 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI 423 (770)
Q Consensus 344 ~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~ 423 (770)
+..+. ...+|..++..+...|++++|+.+|+++++..+....++..++.+.... |++++|..+|+++++..|+++.+|
T Consensus 119 ~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~ 196 (243)
T 2q7f_A 119 RAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE-GMLDEALSQFAAVTEQDPGHADAF 196 (243)
T ss_dssp HHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHH
Confidence 99987 6889999999999999999999999999998887889999999988876 999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHc
Q 004187 424 LEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMY 469 (770)
Q Consensus 424 l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~ 469 (770)
..++.++...|++++|..+|+++++..| ++..+|..+..++...
T Consensus 197 ~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 197 YNAGVTYAYKENREKALEMLDKAIDIQP--DHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHCT--TCHHHHHHHTC-----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCc--chHHHHHHHHHHHhhc
Confidence 9999999999999999999999999988 6667777666555433
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=1.6e-16 Score=164.32 Aligned_cols=222 Identities=12% Similarity=0.027 Sum_probs=200.2
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhCcHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS----EMLRYAFAELEESRGAIAAAKKL 338 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s----~~lw~~~a~~~~~~g~~e~A~~i 338 (770)
.++.++..|++++..+|.+..+|+.++.++...|++++|++.|++++. .|.+ ...|+.+|.++...|++++|...
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 96 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQ 96 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 456788999999999999999999999999999999999999999999 5544 44589999999999999999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 339 YESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 339 ye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
|+++++..|. ...+|..++..+...|++++|+..|+++++..+....+|..++...+.. +++++|.+.|+++++..|+
T Consensus 97 ~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 97 YQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcc
Confidence 9999999998 6789999999999999999999999999999888899999999444554 7999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCC---Cch---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 419 EPAYILEYADFLSRLND---DRNIRALFERALSSL---PPE---ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 419 ~~~~~l~ya~~l~~~g~---~~~Ar~lferaL~~~---p~~---~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
++..+...+..+...++ +++|...|+++++.. |.. ....+|..++.+....|+.+.+.+.++++.+..|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 99999999999999888 888999999999865 321 1346888888888899999999999999999998
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=6.2e-16 Score=158.15 Aligned_cols=206 Identities=18% Similarity=0.168 Sum_probs=188.6
Q ss_pred cCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHH
Q 004187 278 LYHY-PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 356 (770)
Q Consensus 278 ~p~~-~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~ 356 (770)
+|.. +.+|+.+|..+...|++++|++.|++++...|++..+|+.++.++...|++++|..+|+++++..|. ...+|..
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 110 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNN 110 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHH
Confidence 4444 6889999999999999999999999999999999999999999999999999999999999999887 6889999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 004187 357 FIRFLRRTEGVEAARKYFLDARK--SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN 434 (770)
Q Consensus 357 ~~~~~~r~~~~e~A~~~f~~Al~--~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g 434 (770)
++..+...|++++|+.+|+++++ ..+....++..++.+.... |++++|.++|+++++..|+++.++..++.++...|
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 99999999999999999999998 6666678888888887775 99999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 435 DDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 435 ~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
++++|..+|+++++..| .....|...+.+....|+.+.+.+.++++.+..|
T Consensus 190 ~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGG--QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp CHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 99999999999999887 5567788888888899999999999999999888
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.73 E-value=6.8e-16 Score=154.01 Aligned_cols=207 Identities=14% Similarity=0.074 Sum_probs=188.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHH
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 357 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~ 357 (770)
.|.++.+|+.++..+...|++++|++.|++++...|++..+|+.++.++...|++++|..+|++++...|. ...+|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999987 68899999
Q ss_pred HHHHHHh-cCHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 004187 358 IRFLRRT-EGVEAARKYFLDARK--SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN 434 (770)
Q Consensus 358 ~~~~~r~-~~~e~A~~~f~~Al~--~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g 434 (770)
+..+... |++++|+.+|+++++ ..+....+|..++.+.... |++++|...|+++++..|+++.+|..++.++...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 9999999 999999999999999 4455578888899887775 99999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 435 DDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 435 ~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
++++|..+|++++...| ..+...|.....+....|+.+.+....+.+.+..|
T Consensus 162 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp CHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 99999999999999766 23455677777788889999999999999888887
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.9e-15 Score=154.09 Aligned_cols=212 Identities=14% Similarity=0.052 Sum_probs=195.0
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHhCcHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS-------EMLRYAFAELEESRGAIAAA 335 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s-------~~lw~~~a~~~~~~g~~e~A 335 (770)
.++.++..|++++... .++.+|+.++.++...|++++|++.|++++...|++ ..+|+.++.++...|++++|
T Consensus 20 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 98 (258)
T 3uq3_A 20 QFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98 (258)
T ss_dssp CHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHH
Confidence 4677889999999999 999999999999999999999999999999998876 78999999999999999999
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 336 KKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 336 ~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
...|++++...+. . ..+...+++++|...|++++...+....+|..+|.+.... |++++|...|+++++.
T Consensus 99 ~~~~~~a~~~~~~--~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 99 IEYYQKSLTEHRT--A-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK-SDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HHHHHHHHHHCCC--H-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCch--h-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhc
Confidence 9999999998876 2 3345567889999999999998887888999999998775 9999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 416 FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 416 ~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.|+++.+|...+.++...|++++|...|+++++..| ++...|..++......|+.+.+...++++.+..+
T Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999999999999888 6678899999999999999999999999999984
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.1e-16 Score=176.24 Aligned_cols=205 Identities=9% Similarity=0.036 Sum_probs=186.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCc-HHHHHHHHHHHhccCCCCcHH
Q 004187 274 CLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGA-IAAAKKLYESLLTDSVNTTAL 352 (770)
Q Consensus 274 aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~-~e~A~~iye~al~~~p~~~~~ 352 (770)
++...|.+.++|..++.++...|++++|++.|++++..+|++..+|+.++.++...|+ +++|...|++++..+|. ...
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~ 167 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQ 167 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHH
Confidence 3456778899999999999999999999999999999999999999999999999996 99999999999999998 799
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR 432 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~ 432 (770)
+|..++..+...|++++|+..|++|++..+.+.++|..++.++... |++++|...|+++++.+|++..+|...+..+..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~-g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998886 999999999999999999999999999999999
Q ss_pred -cCChhHH-----HHHHHHHHhCCCchhHHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 004187 433 -LNDDRNI-----RALFERALSSLPPEESIEVWKRFTQFEQMYG--DLDSTLKVEQRR 482 (770)
Q Consensus 433 -~g~~~~A-----r~lferaL~~~p~~~~~~lw~~~~~fE~~~G--d~~~~~k~~~R~ 482 (770)
.|..++| ...|+++|...| ++...|..+..+....| +.+.+.+..+++
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P--~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVP--HNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 4555888 589999999998 66788888877776777 567777766665
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=4.6e-16 Score=157.60 Aligned_cols=203 Identities=12% Similarity=0.080 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 360 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~ 360 (770)
.+..|+..|..+...|++++|+..|++++...|++..+|+.++.++...|++++|...|+++++..|. ...+|..++..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999887 78999999999
Q ss_pred HHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHH
Q 004187 361 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIR 440 (770)
Q Consensus 361 ~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar 440 (770)
+...|++++|+.+|+++++..+....++..++.+.... |++++|...|+++++..|+++.++..++.++...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL-EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999998888889999999987775 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 441 ALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 441 ~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.+|++++...| ....+|..++......|+.+.+.+.++++.+..|
T Consensus 180 ~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 180 SQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999887 5678899999999999999999999999999988
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.70 E-value=2.5e-15 Score=153.59 Aligned_cols=186 Identities=9% Similarity=-0.034 Sum_probs=175.4
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
++.++..|++++...|.+..+|+.++.++...|++++|++.|++++...|.+..+|+.++.++...|++++|..+|++++
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132 (252)
T ss_dssp TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c--cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHH
Q 004187 344 T--DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 421 (770)
Q Consensus 344 ~--~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~ 421 (770)
. ..+. ...+|..++..+...|++++|..+|+++++..+....++..++.+.... |++++|..+|+++++..|+++.
T Consensus 133 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~ 210 (252)
T 2ho1_A 133 QDTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE-REYVPARQYYDLFAQGGGQNAR 210 (252)
T ss_dssp TCTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSCCCHH
T ss_pred hCccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHH
Confidence 9 6665 6789999999999999999999999999998887889999999988775 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 422 YILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 422 ~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
.+...+.++...|++++|..+|++++...|
T Consensus 211 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 211 SLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999888
No 43
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.69 E-value=6.7e-16 Score=175.16 Aligned_cols=209 Identities=15% Similarity=0.050 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI-DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~-e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
++++..+++++...|.+..+|+.+|..+...|++ ++|++.|+++++..|++..+|+.+|.++...|++++|...|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556677888888899999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------CCHHHHH
Q 004187 344 TDSVNTTALAHIQFIRFLRRT---------EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD--------KDPKLAH 406 (770)
Q Consensus 344 ~~~p~~~~~~w~~~~~~~~r~---------~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~--------g~~~~A~ 406 (770)
+..|. ..+|..++..+... |++++|+..|+++++..+....+|..+|.++.. . |++++|.
T Consensus 165 ~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 165 THCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS-LYFNTGQNPKISQQAL 241 (474)
T ss_dssp TTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHH
T ss_pred hhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHhhccccchHHHHH
Confidence 99987 58999999999999 999999999999999988889999999988654 4 7899999
Q ss_pred HHHHHHHHhCC---CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 004187 407 NVFEAGLKRFM---HEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKV 478 (770)
Q Consensus 407 ~ife~alk~~p---~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~ 478 (770)
..|+++++..| +++.+|..++.++..+|++++|...|+++++..| ++...|..........|+.+.+.+.
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP--AWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999988 6678888888888788877666653
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=1.3e-14 Score=144.69 Aligned_cols=187 Identities=13% Similarity=0.059 Sum_probs=174.6
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-CcHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR-GAIAAAKKLYES 341 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~-g~~e~A~~iye~ 341 (770)
..+.++..|++++...|.+..+|..++.++...|++++|++.|++++...|.+..+|+.++.++... |++++|...|++
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 102 (225)
T 2vq2_A 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDK 102 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred Hhc--cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-C
Q 004187 342 LLT--DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM-H 418 (770)
Q Consensus 342 al~--~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p-~ 418 (770)
+++ ..+. ...+|..++..+...|++++|+.+|+++++..+....++..++.+.... |++++|..+|+++++..| +
T Consensus 103 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~ 180 (225)
T 2vq2_A 103 ALADPTYPT-PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-GQLGDADYYFKKYQSRVEVL 180 (225)
T ss_dssp HHTSTTCSC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHCSC
T ss_pred HHcCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Confidence 999 4444 5789999999999999999999999999998888889999999988776 999999999999999999 9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 419 EPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 419 ~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
++..+...+.++...|+.+.+..+++.+++..|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 181 QADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 999998889999999999999999999998877
No 45
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.67 E-value=1.6e-12 Score=147.53 Aligned_cols=365 Identities=9% Similarity=0.010 Sum_probs=201.2
Q ss_pred CCCCHHHHHHHHHHhc-----CCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCh
Q 004187 19 DKYNVETAEILANSAL-----HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMA----VNNDDATKQLFSRCLLICLQV 89 (770)
Q Consensus 19 ~P~d~~aw~~l~~~~~-----~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~----~~~~~~a~~ifeRaL~~~p~~ 89 (770)
++.|.+++..+...+. .+++++|...|++++.. .+...+..++.++.. .+++++|...|+++.... +.
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~ 111 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LP 111 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CH
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CH
Confidence 4566666666665443 24566666667666654 455666666666666 666667777776665532 34
Q ss_pred HHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHc
Q 004187 90 PLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVV 169 (770)
Q Consensus 90 ~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~ 169 (770)
..+...+........ ...+.+++.+.|+++... .....+..+..+...... -.++.++|...|++++.
T Consensus 112 ~a~~~Lg~~y~~g~g--~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g-----~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNG--VKVDKAESVKWFRLAAEQ-----GRDSGQQSMGDAYFEGDG-----VTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSS-----SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCC-----CCCCHHHHHHHHHHHHH
Confidence 444444444332110 123455666666665543 123344444433321100 01234455555555543
Q ss_pred cccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHH
Q 004187 170 TPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLT 249 (770)
Q Consensus 170 ~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~ 249 (770)
... . ..+..+..
T Consensus 180 ~~~--~------------------------------------------------------------------~a~~~Lg~ 191 (490)
T 2xm6_A 180 QGN--V------------------------------------------------------------------WSCNQLGY 191 (490)
T ss_dssp TTC--H------------------------------------------------------------------HHHHHHHH
T ss_pred CCC--H------------------------------------------------------------------HHHHHHHH
Confidence 310 0 01111111
Q ss_pred -HHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004187 250 -FEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK----SGSIDAAIKVFQRALKALPDSEMLRYAFAE 324 (770)
Q Consensus 250 -~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~----~g~~e~A~~v~erAi~~~P~s~~lw~~~a~ 324 (770)
+..+. .+ ....+.++..|++++.. .++.+++.++.++.. .+++++|+..|++++.. .+...++.++.
T Consensus 192 ~y~~g~--g~--~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 263 (490)
T 2xm6_A 192 MYSRGL--GV--ERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGY 263 (490)
T ss_dssp HHHHTS--SS--CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHH
T ss_pred HHhcCC--CC--CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 11111 00 12334455566666543 456666666666665 56667777777776654 34555666666
Q ss_pred HHHH----hCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004187 325 LEES----RGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT-----EGVEAARKYFLDARKSPNFTYHVYVAYALMA 395 (770)
Q Consensus 325 ~~~~----~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~-----~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le 395 (770)
++.. .+++++|...|+++++.. ...++..++.++... +++++|..+|+++++..+ ..++..++.+.
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y 338 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--ATAQANLGAIY 338 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--HHHHHHHHHHH
Confidence 6666 566677777777766542 345666666666655 667777777777766543 45566666665
Q ss_pred HhcCC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Q 004187 396 FCQDK---DPKLAHNVFEAGLKRFMHEPAYILEYADFLSR----LNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM 468 (770)
Q Consensus 396 ~~~~g---~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~----~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~ 468 (770)
... | +.++|.+.|+++++. .++..+..++.++.. .+++++|..+|+++++.. +...+..+..+...
T Consensus 339 ~~~-g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 339 FRL-GSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHS-CCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHH
T ss_pred HhC-CCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHc
Confidence 442 3 566677777777665 456666666666666 566677777777776642 24455555555554
Q ss_pred ----cCCHHHHHHHHHHHHHhc
Q 004187 469 ----YGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 469 ----~Gd~~~~~k~~~R~~~~~ 486 (770)
.+|.+.+...++++.+.-
T Consensus 412 g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 412 GLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCC
Confidence 566777777777666665
No 46
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.66 E-value=1.8e-15 Score=179.48 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=165.2
Q ss_pred HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHH
Q 004187 277 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 356 (770)
Q Consensus 277 ~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~ 356 (770)
.+|+++++|..+|.++.++|++++|++.|++|++..|++..+|+.+|.++.+.|++++|...|+++++.+|+ ...+|+.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999999998 7999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCh
Q 004187 357 FIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD 436 (770)
Q Consensus 357 ~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~ 436 (770)
++..+.+.|++++|++.|++|++..+....+|.++|.++... |++++|.+.|+++++..|+++.+|..++..+..+|++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999999999988999999999998875 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 004187 437 RNIRALFERALSSLP 451 (770)
Q Consensus 437 ~~Ar~lferaL~~~p 451 (770)
++|.+.|+++++..+
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999997543
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=1.2e-14 Score=149.96 Aligned_cols=223 Identities=16% Similarity=0.049 Sum_probs=194.1
Q ss_pred chhhhHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHH
Q 004187 261 ASSNKRIIFTYEQCLMY----LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAK 336 (770)
Q Consensus 261 ~~~~~r~~~~ye~aL~~----~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~ 336 (770)
.+.++.++..|++++.. .|.++.+|+.++.++...|++++|+..|++++...|++..+|+.+|.++...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 35677888999999986 35677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 004187 337 KLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF 416 (770)
Q Consensus 337 ~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~ 416 (770)
..|+++++..|. ...+|..++..+.+.|++++|+.+|+++++..+.....+...+.. ... |++++|..+|++++...
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~-~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK-LDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH-HCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh-cCHHHHHHHHHHHHhcC
Confidence 999999999987 679999999999999999999999999998777665544444333 443 89999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 417 MHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPE--ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 417 p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~--~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
|++...|. .+.++...++.++|...+++++...+.. ....+|..++......|+.+.+...++++.+..|
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 88766654 6777778888899999999999875521 2368899999999999999999999999998887
No 48
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.65 E-value=8.6e-15 Score=147.97 Aligned_cols=198 Identities=8% Similarity=0.008 Sum_probs=161.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHH
Q 004187 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP-DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 357 (770)
Q Consensus 279 p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P-~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~ 357 (770)
+.+++.|+..|..+...|++++|+..|++++...| .+..+|+.+|.++...|++++|...|+++++..|. ...+|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 45778999999999999999999999999999998 88888989999999999999999999999999998 78899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHH
Q 004187 358 IRFLRRTEGVEAARKYFLDARKSPNFTY-------HVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--EPAYILEYAD 428 (770)
Q Consensus 358 ~~~~~r~~~~e~A~~~f~~Al~~~~~~~-------~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~--~~~~~l~ya~ 428 (770)
+..+...|++++|+..|+++++..+... .+|...+.+.... |++++|...|+++++..|+ ++..|...+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA-GNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 9999999999999999999999877766 5688888887775 9999999999999999999 8899998888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 429 FLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 429 ~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
++...| ..+++++....+.. ...+ ....+...|..+.+...++++.+..|
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~~--~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASSN--KEKY--ASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTTC--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHH-----HHHHHHHHhcccCC--HHHH--HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 887654 34556666554311 1111 12223344666777777777777777
No 49
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=5.4e-14 Score=148.89 Aligned_cols=187 Identities=11% Similarity=0.080 Sum_probs=160.7
Q ss_pred hhhHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMY--LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~--~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
..+.++..|++.+.. +|.++.+|+.+|.++...|++++|++.|++ |++..++..++.++.+.|++++|.+.|+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 356778889998875 599999999999999999999999999998 8999999999999999999999999999
Q ss_pred HHhccCCCCcHHHHH--HHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 341 SLLTDSVNTTALAHI--QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 341 ~al~~~p~~~~~~w~--~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
++++..|+ .....+ .+..+....|++++|..+|+++++..+.+..+|..+|.+.... |++++|...|+++++..|+
T Consensus 155 ~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 155 KMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ-GRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC
Confidence 99998887 333332 3445555668899999999999998888899999999887775 9999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCChhH-HHHHHHHHHhCCCchhHHHH
Q 004187 419 EPAYILEYADFLSRLNDDRN-IRALFERALSSLPPEESIEV 458 (770)
Q Consensus 419 ~~~~~l~ya~~l~~~g~~~~-Ar~lferaL~~~p~~~~~~l 458 (770)
++++|..++.++...|+..+ +..+++++++..| ++..+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P--~~~~~ 271 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR--SHPFI 271 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--CChHH
Confidence 99999999999999998865 6789999999888 44444
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=3.9e-14 Score=137.91 Aligned_cols=171 Identities=10% Similarity=0.092 Sum_probs=161.3
Q ss_pred CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004187 313 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 392 (770)
Q Consensus 313 P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a 392 (770)
.++..+|+.+|.++...|++++|.+.|+++++.+|. ...+|..++..+.+.|++++|...+++++...+....++...+
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 367889999999999999999999999999999998 7899999999999999999999999999998888899999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCH
Q 004187 393 LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDL 472 (770)
Q Consensus 393 ~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~ 472 (770)
.+.... ++++.|...++++++..|++..+|...+.++..+|++++|...|+++++..| .+..+|...+......|+.
T Consensus 81 ~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMI-DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP--GFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc--hhhhHHHHHHHHHHHCCCH
Confidence 887775 9999999999999999999999999999999999999999999999999988 6788999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 004187 473 DSTLKVEQRRKEALS 487 (770)
Q Consensus 473 ~~~~k~~~R~~~~~~ 487 (770)
+.+.+.++++++..|
T Consensus 158 ~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 158 DEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999999888
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=1.6e-14 Score=149.25 Aligned_cols=204 Identities=13% Similarity=0.069 Sum_probs=179.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC--CCcHHHHHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV--NTTALAHIQFI 358 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p--~~~~~~w~~~~ 358 (770)
++++++.+|..+...|++++|+..|+++++..|++..+|+.++.++...|++++|...|++++...+ .....+|..++
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999432 22356799999
Q ss_pred HHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhH
Q 004187 359 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 438 (770)
Q Consensus 359 ~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~ 438 (770)
..+...|++++|+..|+++++..+....+|..+|.+.... |++++|.+.|+++++..|+++.+|...+......+++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK-GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT-TCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888889999999998775 999999999999999999999999999945555569999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcc
Q 004187 439 IRALFERALSSLPPEESIEVWKRFTQFEQMYGD---LDSTLKVEQRRKEALS 487 (770)
Q Consensus 439 Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd---~~~~~k~~~R~~~~~~ 487 (770)
|..+|+++++..| ++...|...+......|+ .+.+...++++.+...
T Consensus 161 A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 161 ADSSFVKVLELKP--NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HHHHHHHHHHHST--TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCc--cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 9999999999988 556677777777777787 7778888999888875
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=4.9e-14 Score=159.83 Aligned_cols=180 Identities=9% Similarity=-0.018 Sum_probs=168.8
Q ss_pred hh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---------CcH
Q 004187 263 SN-KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESR---------GAI 332 (770)
Q Consensus 263 ~~-~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~---------g~~ 332 (770)
.+ +.++..|++++..+|.+.++|+.+|.++...|++++|++.|+++++..|+ ..+|..++.++... |++
T Consensus 117 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~ 195 (474)
T 4abn_A 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHV 195 (474)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhH
Confidence 45 78889999999999999999999999999999999999999999999999 69999999999999 999
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCC
Q 004187 333 AAAKKLYESLLTDSVNTTALAHIQFIRFLRRT--------EGVEAARKYFLDARKSPN---FTYHVYVAYALMAFCQDKD 401 (770)
Q Consensus 333 e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~--------~~~e~A~~~f~~Al~~~~---~~~~~yi~~a~le~~~~g~ 401 (770)
++|...|+++++..|. ...+|..++..+... +++++|+..|+++++..+ ....+|..+|.++... |+
T Consensus 196 ~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~-g~ 273 (474)
T 4abn_A 196 MDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE-ES 273 (474)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc-CC
Confidence 9999999999999998 789999999999998 999999999999999877 7899999999998885 99
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004187 402 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFER 445 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lfer 445 (770)
+++|.+.|+++++..|+++..|..++.++..+|++++|...+++
T Consensus 274 ~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999988888776554
No 53
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=6.3e-14 Score=142.76 Aligned_cols=188 Identities=11% Similarity=-0.047 Sum_probs=170.2
Q ss_pred hhhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHY-------PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAA 335 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~-------~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A 335 (770)
.++.++..|++++...|.+ ..+|+.++.++...|++++|+..|++++...|. +.++...|++++|
T Consensus 53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKE 124 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHH
Confidence 4567788999999988876 799999999999999999999999999999988 3556677889999
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 336 KKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 336 ~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
...|++++...|. ...+|..++..+...|++++|...|+++++..+....+|..++.+.... |++++|...|+++++.
T Consensus 125 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHh
Confidence 9999999999887 7889999999999999999999999999998888899999999998775 9999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CchhHHHHHHHH
Q 004187 416 FMHEPAYILEYADFLSRLNDDRNIRALFERALSSL------PPEESIEVWKRF 462 (770)
Q Consensus 416 ~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~------p~~~~~~lw~~~ 462 (770)
.|+++.+|...+.++..+|++++|...|+++++.. | .+..++..+
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p--~~~~~~~~l 253 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS--SAREIDQLY 253 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--THHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCC--chHHHHHHH
Confidence 99999999999999999999999999999999987 5 445555443
No 54
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.60 E-value=7.6e-12 Score=141.95 Aligned_cols=333 Identities=10% Similarity=-0.024 Sum_probs=235.3
Q ss_pred CCCHHHHHHHHHHhc-----CCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCChH
Q 004187 20 KYNVETAEILANSAL-----HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMA----VNNDDATKQLFSRCLLICLQVP 90 (770)
Q Consensus 20 P~d~~aw~~l~~~~~-----~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~----~~~~~~a~~ifeRaL~~~p~~~ 90 (770)
..+.+++..|...+. .+++++|...|++++.. .+...+..++.++.. .+++++|...|+++.... +..
T Consensus 72 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~ 148 (490)
T 2xm6_A 72 QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDS 148 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHH
Confidence 378899999988665 45899999999999975 578889999999998 789999999999997753 566
Q ss_pred HHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc
Q 004187 91 LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT 170 (770)
Q Consensus 91 lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~ 170 (770)
.+..++........ ...+.+++.+.|+++++. .+...|..+..+...... ..++.++|...|++++..
T Consensus 149 a~~~Lg~~y~~g~g--~~~d~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g-----~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 149 GQQSMGDAYFEGDG--VTRDYVMAREWYSKAAEQ-----GNVWSCNQLGYMYSRGLG-----VERNDAISAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSS-----SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCC-----CCcCHHHHHHHHHHHHHC
Confidence 67777666554211 134688999999999874 234566666665543110 024567777777777754
Q ss_pred ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHH-
Q 004187 171 PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLT- 249 (770)
Q Consensus 171 P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~- 249 (770)
... ...+ .+..
T Consensus 217 ~~~--~a~~------------------------------------------------------------------~lg~~ 228 (490)
T 2xm6_A 217 GDE--LGQL------------------------------------------------------------------HLADM 228 (490)
T ss_dssp TCH--HHHH------------------------------------------------------------------HHHHH
T ss_pred CCH--HHHH------------------------------------------------------------------HHHHH
Confidence 211 0000 0000
Q ss_pred HHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 250 FEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK----SGSIDAAIKVFQRALKALPDSEMLRYAFAEL 325 (770)
Q Consensus 250 ~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~----~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~ 325 (770)
+..+.. + ....+.++..|++++.. .++.+++.++.++.. .++.++|+..|+++++. .+...++.++.+
T Consensus 229 y~~g~g--~--~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 229 YYFGIG--V--TQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHL 300 (490)
T ss_dssp HHHTSS--S--CCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred HHcCCC--C--CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 000000 0 01234556667777653 567788888888887 78888888888888765 566777888888
Q ss_pred HHHh-----CcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004187 326 EESR-----GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE---GVEAARKYFLDARKSPNFTYHVYVAYALMAFC 397 (770)
Q Consensus 326 ~~~~-----g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~---~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~ 397 (770)
+... +++++|...|+++++.. ...+++.++.++...| ++++|+.+|+++++.. ...++..++.+...
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQ 375 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHc
Confidence 8776 78888888888888764 3567788887777644 6788888888888763 46778888877665
Q ss_pred ---cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 004187 398 ---QDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR----LNDDRNIRALFERALSSL 450 (770)
Q Consensus 398 ---~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~----~g~~~~Ar~lferaL~~~ 450 (770)
..++.++|...|+++++. .++..+..++.++.. .+++++|...|++|++..
T Consensus 376 g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 376 GKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 137888888888888875 357778888888877 788888888888888865
No 55
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=1.4e-13 Score=145.66 Aligned_cols=201 Identities=13% Similarity=0.022 Sum_probs=175.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHH
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA--LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~--~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~ 355 (770)
.+....++..++.++...++.++|++.|++++.. .|++..+|+.+|.++...|++++|..+|++ +. ...+|.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~-~~~~~~ 134 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GD-SLECMA 134 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CC-SHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CC-CHHHHH
Confidence 4445667888999999999999999999999986 699999999999999999999999999988 44 678999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 004187 356 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA--LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL 433 (770)
Q Consensus 356 ~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a--~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~ 433 (770)
.++..+.+.|++++|++.|+++++..+......+..+ .+... .|++++|..+|+++++.+|+++.+|...+.++..+
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~-~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG-GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 9999999999999999999999987766544433322 33223 48999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhcc
Q 004187 434 NDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDS-TLKVEQRRKEALS 487 (770)
Q Consensus 434 g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~-~~k~~~R~~~~~~ 487 (770)
|++++|...|++++...| ++...|..++.+....|+... +...++++.+..|
T Consensus 214 g~~~eA~~~l~~al~~~p--~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDS--GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999988 778889999988888998864 6788999999998
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=3.3e-13 Score=139.11 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=158.2
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
.++.++..|++++...|.++.+|..+|.++...|++++|++.|++++...|++..+|+.+|.++...|++++|..+|+++
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC----
Q 004187 343 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH---- 418 (770)
Q Consensus 343 l~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~---- 418 (770)
++..|. ....+.. .......|++++|..+|++++...+.....+. .+.+... .++.++|...++++++..+.
T Consensus 138 ~~~~~~-~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~ 213 (275)
T 1xnf_A 138 YQDDPN-DPFRSLW-LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLG-NISEQTLMERLKADATDNTSLAEH 213 (275)
T ss_dssp HHHCTT-CHHHHHH-HHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTT-SSCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHhCCC-ChHHHHH-HHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHH-hcCHHHHHHHHHHHhccccccccc
Confidence 999987 4433333 33446679999999999999876554433443 3444344 47889999999999887654
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 419 EPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 419 ~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
++.+|...+.++...|++++|...|++++...|
T Consensus 214 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 368899999999999999999999999999887
No 57
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=8.4e-14 Score=133.87 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
...|+..+..+...|++++|+..|++++...|.+..+|+.++.++...|++++|...|+++++..|. ...+|..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 4678888889999999999999999999999999999999999999999999999999999998887 678888899988
Q ss_pred HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHH
Q 004187 362 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRA 441 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~ 441 (770)
...|++++|..+|+++++..+....++..++.+.... |++++|..+|+++++..|+++.++..++.++...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL-GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999999999999887777788888888887775 899999999999999999888899999999999999999999
Q ss_pred HHHHHHhCCC
Q 004187 442 LFERALSSLP 451 (770)
Q Consensus 442 lferaL~~~p 451 (770)
+|+++++..|
T Consensus 166 ~~~~~~~~~~ 175 (186)
T 3as5_A 166 HFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHcCC
Confidence 9999887654
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.55 E-value=9.1e-14 Score=164.85 Aligned_cols=175 Identities=14% Similarity=0.087 Sum_probs=164.7
Q ss_pred HhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHH
Q 004187 310 KALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYV 389 (770)
Q Consensus 310 ~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi 389 (770)
..+|++..+|..+|.++.++|++++|.+.|+++++.+|+ ...+|..++..+.+.|++++|+..|++|++..+....+|.
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 468999999999999999999999999999999999998 7999999999999999999999999999999998999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHc
Q 004187 390 AYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMY 469 (770)
Q Consensus 390 ~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~ 469 (770)
++|.++... |++++|.+.|+++++..|+++..|..++..+..+|++++|...|++||+..| ++...|..++......
T Consensus 82 nLg~~l~~~-g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 82 NMGNTLKEM-QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP--DFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHhhhhhHHHhc
Confidence 999998885 9999999999999999999999999999999999999999999999999998 7788999999999999
Q ss_pred CCHHHHHHHHHHHHHhccc
Q 004187 470 GDLDSTLKVEQRRKEALSR 488 (770)
Q Consensus 470 Gd~~~~~k~~~R~~~~~~~ 488 (770)
|+.+.+.+.++++.+..+.
T Consensus 159 g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp TCCTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhChh
Confidence 9999999999999988773
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=3.8e-13 Score=146.74 Aligned_cols=313 Identities=11% Similarity=-0.002 Sum_probs=187.0
Q ss_pred CCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-------C
Q 004187 21 YNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAA----KFWKQYVEAYMAVNNDDATKQLFSRCLLICL-------Q 88 (770)
Q Consensus 21 ~d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~----~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p-------~ 88 (770)
.....|...+..+ ..+++++|...|++++...|.+. .+|..++..+...|++++|...|++++.... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3456677777644 56799999999999999999984 6899999999999999999999999998742 2
Q ss_pred hHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCC---hhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHH
Q 004187 89 VPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISS---GPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQ 165 (770)
Q Consensus 89 ~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s---~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyq 165 (770)
..+|...+......++ .+.+...|++++......... ..+|........ ..++...+.. .
T Consensus 87 ~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~~~~--~ 149 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGN------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH---------AKGKSFGCPG--P 149 (406)
T ss_dssp HHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------HHHHTCC------
T ss_pred HHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH---------HcCCcccccc--c
Confidence 4566666666665554 678888888888754321110 001111111100 0000000000 0
Q ss_pred HHHccccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHH
Q 004187 166 RAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWK 245 (770)
Q Consensus 166 ral~~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~ 245 (770)
..+ . .+..+....|.+|..
T Consensus 150 ~~~--~------------------------~~~~~a~~~~~~A~~----------------------------------- 168 (406)
T 3sf4_A 150 QDV--G------------------------EFPEEVRDALQAAVD----------------------------------- 168 (406)
T ss_dssp -----C------------------------CCCHHHHHHHHHHHH-----------------------------------
T ss_pred chh--h------------------------hhhhhHHHHHHHHHH-----------------------------------
Confidence 000 0 000000111222222
Q ss_pred HHHHHHHcCCCCCCcchhhhHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---
Q 004187 246 RLLTFEKGNPQRIDTASSNKRIIFTYEQCLMY------LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE--- 316 (770)
Q Consensus 246 ~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~------~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~--- 316 (770)
.|++++.. .+....+|..++.++...|++++|...|++++...+...
T Consensus 169 ------------------------~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (406)
T 3sf4_A 169 ------------------------FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 224 (406)
T ss_dssp ------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------------------------HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH
Confidence 22222221 122245788888888889999999999999988755432
Q ss_pred ---HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC-----
Q 004187 317 ---MLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF----- 383 (770)
Q Consensus 317 ---~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~-----~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~----- 383 (770)
.++..+|.++...|++++|...|++++...+.. ...++..++..+...|++++|...|+++++..+.
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 367788888888888888888888888654431 1345666666777777777777777776643111
Q ss_pred -CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHhcCCh
Q 004187 384 -TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH------EPAYILEYADFLSRLNDD 436 (770)
Q Consensus 384 -~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~------~~~~~l~ya~~l~~~g~~ 436 (770)
...++..+|.+.... |++++|...|+++++..+. ....+...+.++...|+.
T Consensus 305 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 305 GEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 134455555555553 6666666666666654211 233444555555555543
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=3.4e-12 Score=132.49 Aligned_cols=210 Identities=9% Similarity=-0.016 Sum_probs=186.6
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hCcHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK----SGSIDAAIKVFQRALKALPDSEMLRYAFAELEES----RGAIAA 334 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~----~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~----~g~~e~ 334 (770)
..+.++..|++++. +.++.+|+.++.++.. .+++++|+..|+++++.. +...++.++.++.. .+++++
T Consensus 21 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 21 DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHH
Confidence 35677889999998 8889999999999999 999999999999999984 88899999999999 999999
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCCHHHHHH
Q 004187 335 AKKLYESLLTDSVNTTALAHIQFIRFLRR----TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFC---QDKDPKLAHN 407 (770)
Q Consensus 335 A~~iye~al~~~p~~~~~~w~~~~~~~~r----~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~---~~g~~~~A~~ 407 (770)
|...|+++++.. ...++..++.++.. .+++++|..+|+++++.. ...++..++.+... ..+++++|..
T Consensus 97 A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 97 ALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999999874 57899999999999 999999999999999976 46788888888665 1489999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH----cCCHHHHHHHH
Q 004187 408 VFEAGLKRFMHEPAYILEYADFLSR----LNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM----YGDLDSTLKVE 479 (770)
Q Consensus 408 ife~alk~~p~~~~~~l~ya~~l~~----~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~----~Gd~~~~~k~~ 479 (770)
.|+++++. +++..+..++.++.. .+++++|...|+++++..+ ...+..+..+... .|+.+.+.+.+
T Consensus 172 ~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 172 SYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 99999987 467888899999999 9999999999999999754 5667777777777 89999999999
Q ss_pred HHHHHhcc
Q 004187 480 QRRKEALS 487 (770)
Q Consensus 480 ~R~~~~~~ 487 (770)
+++.+.-+
T Consensus 246 ~~a~~~~~ 253 (273)
T 1ouv_A 246 KKGCKLGA 253 (273)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99999887
No 61
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.54 E-value=1.9e-13 Score=141.27 Aligned_cols=176 Identities=14% Similarity=0.020 Sum_probs=153.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--
Q 004187 275 LMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-- 349 (770)
Q Consensus 275 L~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~-- 349 (770)
....+.+++.++..|..+...|++++|+..|++++...|++ ..+|+.+|.++...|++++|...|+++++..|..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34578899999999999999999999999999999999999 8999999999999999999999999999987742
Q ss_pred cHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHhcCCCHHH
Q 004187 350 TALAHIQFIRFLRR--------TEGVEAARKYFLDARKSPNFTYHVY-----------------VAYALMAFCQDKDPKL 404 (770)
Q Consensus 350 ~~~~w~~~~~~~~r--------~~~~e~A~~~f~~Al~~~~~~~~~y-----------------i~~a~le~~~~g~~~~ 404 (770)
...+++.++..+.. .|++++|+..|+++++..|....++ +.+|.+.+.. |++++
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~ 166 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR-ELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHH
Confidence 36788899999988 9999999999999998765543333 6677777675 99999
Q ss_pred HHHHHHHHHHhCCC---cHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhCCC
Q 004187 405 AHNVFEAGLKRFMH---EPAYILEYADFLSRL----------NDDRNIRALFERALSSLP 451 (770)
Q Consensus 405 A~~ife~alk~~p~---~~~~~l~ya~~l~~~----------g~~~~Ar~lferaL~~~p 451 (770)
|...|+++++.+|+ .+..+...+..+..+ |++++|...|+++++..|
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 99999999999988 457888888888866 888999999999999988
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.54 E-value=3.8e-13 Score=135.81 Aligned_cols=193 Identities=8% Similarity=-0.003 Sum_probs=163.5
Q ss_pred hhhHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLY-HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p-~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
.++.++..|++++...| .+..+|+.+|.++...|++++|+..|++++...|++..+|+.+|.++...|++++|...|++
T Consensus 22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 101 (228)
T 4i17_A 22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTE 101 (228)
T ss_dssp CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 46778899999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCcH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004187 342 LLTDSVNTTA-------LAHIQFIRFLRRTEGVEAARKYFLDARKSPNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAG 412 (770)
Q Consensus 342 al~~~p~~~~-------~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~--~~~~yi~~a~le~~~~g~~~~A~~ife~a 412 (770)
+++..|. .. .+|..++..+...|++++|+..|+++++..+. ...+|..++.+.+. .+..+++++
T Consensus 102 al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~------~~~~~~~~a 174 (228)
T 4i17_A 102 GIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN------NGADVLRKA 174 (228)
T ss_dssp HHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred HHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH------HHHHHHHHH
Confidence 9999997 55 56899999999999999999999999999888 77899999887654 355667777
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 004187 413 LKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFE 466 (770)
Q Consensus 413 lk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE 466 (770)
....+.+...+.. ......+.+++|...|+++++..| ++..++..+..+.
T Consensus 175 ~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~p--~~~~~~~~l~~i~ 224 (228)
T 4i17_A 175 TPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLSP--NRTEIKQMQDQVK 224 (228)
T ss_dssp GGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHH
Confidence 7776666544322 233445678999999999999988 4455555554443
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=3.4e-13 Score=141.38 Aligned_cols=208 Identities=12% Similarity=0.066 Sum_probs=157.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC---
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA--------LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS--- 346 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~--------~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~--- 346 (770)
.|....+|..++.++...|++++|+.+|++++.. .|....++..++.++...|++++|..+|++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4555677888888888888888888888888874 45566777788888888888888888888887652
Q ss_pred -----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 004187 347 -----VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP--------NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 413 (770)
Q Consensus 347 -----p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~--------~~~~~~yi~~a~le~~~~g~~~~A~~ife~al 413 (770)
+. ...+|..++..+...|++++|+.+|+++++.. +....++..+|.+.... |++++|..+|++++
T Consensus 103 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 103 LGKDHPA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRAL 180 (311)
T ss_dssp HCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred hCCCChH-HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 22 35677777888888888888888888887641 22345667777776664 88888888888888
Q ss_pred Hh--------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----------------------------------
Q 004187 414 KR--------FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP---------------------------------- 451 (770)
Q Consensus 414 k~--------~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p---------------------------------- 451 (770)
+. .+....++..++.++..+|++++|..+|+++++..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 76 344556777788888888888888888888886321
Q ss_pred -------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 452 -------------PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 452 -------------~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
......+|..++......|+.+.+.+.++++.+..+
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 124567888889988899999999999999998776
No 64
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.50 E-value=1.5e-13 Score=162.82 Aligned_cols=187 Identities=10% Similarity=-0.131 Sum_probs=163.7
Q ss_pred HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 277 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRAL--------KALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 277 ~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi--------~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
.+|.++.+++..+ ...|++++|++.|++++ ...|++..+|+.+|.++...|++++|...|+++++.+|.
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4677888777666 67889999999999999 888999999999999999999999999999999999998
Q ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004187 349 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYAD 428 (770)
Q Consensus 349 ~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~ 428 (770)
...+|..++..+...|++++|+..|++|++..+....+|.++|.++... |++++ .+.|+++++..|+++.+|..++.
T Consensus 466 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 466 -RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 7899999999999999999999999999998888889999999987775 99999 99999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCC
Q 004187 429 FLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGD 471 (770)
Q Consensus 429 ~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd 471 (770)
.+..+|++++|...|+++++..| ++...|...+......|.
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSR--HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTST--THHHHHHHHHHHTC----
T ss_pred HHHHcCCHHHHHHHHHhhcccCc--ccHHHHHHHHHHHHccCC
Confidence 99999999999999999999888 667777777666544444
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=3.1e-13 Score=148.56 Aligned_cols=223 Identities=9% Similarity=0.003 Sum_probs=189.3
Q ss_pred hhhHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhCcH
Q 004187 263 SNKRIIFTYEQCLMYLYHYP----DIWYDYATWNAKSGSIDAAIKVFQRALKA------LPDSEMLRYAFAELEESRGAI 332 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~----~~w~~~a~~l~~~g~~e~A~~v~erAi~~------~P~s~~lw~~~a~~~~~~g~~ 332 (770)
.++.++..|++++...|.++ .+|+.++.++...|++++|+..|++++.. .|....++..++.++...|++
T Consensus 63 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 142 (411)
T 4a1s_A 63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF 142 (411)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH
Confidence 45678889999999999987 58999999999999999999999999987 466678899999999999999
Q ss_pred HHHHHHHHHHhccC------CCCcHHHHHHHHHHHHHhcC-----------------HHHHHHHHHHHHcC------CCC
Q 004187 333 AAAKKLYESLLTDS------VNTTALAHIQFIRFLRRTEG-----------------VEAARKYFLDARKS------PNF 383 (770)
Q Consensus 333 e~A~~iye~al~~~------p~~~~~~w~~~~~~~~r~~~-----------------~e~A~~~f~~Al~~------~~~ 383 (770)
++|...|++++... +. ...+|..++..+...|+ ++.|+.+|+++++. .+.
T Consensus 143 ~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLGDRLS-EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGA 221 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999872 22 45688899999999999 99999999998763 122
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc----h
Q 004187 384 TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP------AYILEYADFLSRLNDDRNIRALFERALSSLPP----E 453 (770)
Q Consensus 384 ~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~------~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~----~ 453 (770)
...++..++.+.... |++++|...|+++++..+... .++..++.++..+|++++|..+|++++...+. .
T Consensus 222 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 300 (411)
T 4a1s_A 222 QGRACGNLGNTYYLL-GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 345778888887775 999999999999999865422 37888999999999999999999999986542 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 454 ESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 454 ~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
....+|..++.+....|+.+.+...++++.+..+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2367888888888899999999999999999877
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=8.3e-13 Score=145.11 Aligned_cols=224 Identities=10% Similarity=0.006 Sum_probs=186.8
Q ss_pred hhhHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhC
Q 004187 263 SNKRIIFTYEQCLMY------LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA------LPDSEMLRYAFAELEESRG 330 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~------~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~------~P~s~~lw~~~a~~~~~~g 330 (770)
.++.++..|++++.. .+....+|..++.++...|++++|...|++++.. .|....++..++.++...|
T Consensus 101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 456778899999987 4667789999999999999999999999999998 4455678899999999999
Q ss_pred c-----------------HHHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC-----
Q 004187 331 A-----------------IAAAKKLYESLLTDSVN-----TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF----- 383 (770)
Q Consensus 331 ~-----------------~e~A~~iye~al~~~p~-----~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~----- 383 (770)
+ +++|...|++++..... ....+|..++..+...|++++|+.+|+++++..+.
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 9 99999999998875321 13458889999999999999999999999874321
Q ss_pred -CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc----
Q 004187 384 -TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------PAYILEYADFLSRLNDDRNIRALFERALSSLPP---- 452 (770)
Q Consensus 384 -~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~------~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~---- 452 (770)
...++..++.++... |++++|...|+++++..+.. ..++..++.++...|++++|..+|++++...+.
T Consensus 261 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 261 AERRANSNLGNSHIFL-GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 133777888887775 99999999999999976532 577889999999999999999999999986431
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 453 EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 453 ~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.....++..++.+....|+.+.+.+.++++.+..+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 22356788888888899999999999999998887
No 67
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.49 E-value=5.2e-14 Score=133.47 Aligned_cols=145 Identities=13% Similarity=0.062 Sum_probs=91.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHH
Q 004187 289 ATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE 368 (770)
Q Consensus 289 a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e 368 (770)
+.++.+.|++++|+..|++++...|++...++.+|.++.+.|++++|.+.|+++++.+|. ...+|..++..+...|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 334444555666666666666666666666666666666666666666666666666665 5666666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 004187 369 AARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNV-FEAGLKRFMHEPAYILEYADFLSRLND 435 (770)
Q Consensus 369 ~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~i-fe~alk~~p~~~~~~l~ya~~l~~~g~ 435 (770)
+|+..|+++++..|....+|..+|.++... |+.++|.+. ++++++.+|+++.++.....++..+|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKN-DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 666666666666666666666666665554 666554444 477777777777777666666666654
No 68
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.3e-11 Score=127.98 Aligned_cols=196 Identities=11% Similarity=0.009 Sum_probs=173.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hCcHHHHHHHHHHHhccCCCCcHHH
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEES----RGAIAAAKKLYESLLTDSVNTTALA 353 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~----~g~~e~A~~iye~al~~~p~~~~~~ 353 (770)
.|.++.+++.++..+...|++++|...|+++++ |++...++.++.++.. .+++++|...|+++++.. ...+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 467899999999999999999999999999999 8888999999999999 999999999999999885 4789
Q ss_pred HHHHHHHHHH----hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 004187 354 HIQFIRFLRR----TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFC----QDKDPKLAHNVFEAGLKRFMHEPAYILE 425 (770)
Q Consensus 354 w~~~~~~~~r----~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~----~~g~~~~A~~ife~alk~~p~~~~~~l~ 425 (770)
+..++.++.. .+++++|+.+|+++++.. ...++..++.+... . +++++|...|+++++.. ++..+..
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~~--~~~a~~~ 151 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVT-RDFKKAVEYFTKACDLN--DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSC-CCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcc-cCHHHHHHHHHHHHhcC--cHHHHHH
Confidence 9999999999 999999999999999975 57889999988766 4 99999999999999975 6788888
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Q 004187 426 YADFLSR----LNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM----YGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 426 ya~~l~~----~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~----~Gd~~~~~k~~~R~~~~~~ 487 (770)
++.++.. .+++++|...|+++++.. +...+..+..+... .|+.+.+.+.++++.+.-+
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 8998888 899999999999999873 35667777777777 8999999999999987644
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=9.9e-13 Score=138.55 Aligned_cols=224 Identities=12% Similarity=0.017 Sum_probs=181.3
Q ss_pred hhhHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhC
Q 004187 263 SNKRIIFTYEQCLMY------LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRG 330 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~------~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s------~~lw~~~a~~~~~~g 330 (770)
.++.++..|++++.. .+....+|..++.++...|++++|...|++++...+.. ..++..++.++...|
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 58 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 456777888888876 34456799999999999999999999999999876533 347888999999999
Q ss_pred c--------------------HHHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC---
Q 004187 331 A--------------------IAAAKKLYESLLTDSVN-----TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN--- 382 (770)
Q Consensus 331 ~--------------------~e~A~~iye~al~~~p~-----~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~--- 382 (770)
+ +++|...|++++..... ....++..++..+...|++++|...|+++++..+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 9 99999999998865211 1345788899999999999999999999986421
Q ss_pred ---CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-
Q 004187 383 ---FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------PAYILEYADFLSRLNDDRNIRALFERALSSLPP- 452 (770)
Q Consensus 383 ---~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~------~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~- 452 (770)
....++..++.+.... |++++|.+.|+++++..+.. ..++...+.++...|++++|...|++++...+.
T Consensus 218 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1234777888887775 99999999999999875443 567888999999999999999999999986441
Q ss_pred ---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 453 ---EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 453 ---~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.....+|..++......|+.+.+...++++.+..+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 22356788888888899999999999999998876
No 70
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.48 E-value=1.4e-12 Score=130.47 Aligned_cols=171 Identities=9% Similarity=0.009 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH----------------HHHHHHHhCcHHHHHHHHHHHhc
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYA----------------FAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~----------------~a~~~~~~g~~e~A~~iye~al~ 344 (770)
+.+.++..|..+...|++++|+..|++++...|++..+|+. +|.++...|++++|...|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46678888889999999999999999999999999999988 99999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCcHHHH
Q 004187 345 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ-DKDPKLAHNVFEAGLKRFMHEPAYI 423 (770)
Q Consensus 345 ~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~-~g~~~~A~~ife~alk~~p~~~~~~ 423 (770)
.+|. ...+|+.++..+...|++++|+..|+++++..|....+|..++.+.+.. .++.+.+...|++++...| ....|
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~ 160 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYAR 160 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHH
Confidence 9998 7899999999999999999999999999998888899999998876543 1234456666666653222 12245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCch
Q 004187 424 LEYADFLSRLNDDRNIRALFERALSSLPPE 453 (770)
Q Consensus 424 l~ya~~l~~~g~~~~Ar~lferaL~~~p~~ 453 (770)
...+..+...|++++|...|+++++..|..
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 555666677889999999999999998843
No 71
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.47 E-value=2e-12 Score=136.33 Aligned_cols=171 Identities=10% Similarity=0.021 Sum_probs=153.1
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHH
Q 004187 276 MYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355 (770)
Q Consensus 276 ~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~ 355 (770)
...|.+.+.++..|..+...|++++|+..|++++...|++..+++.+|.++...|++++|...|++++...|+ ....+.
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~ 189 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGL 189 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHH
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999886 444455
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhc
Q 004187 356 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE--PAYILEYADFLSRL 433 (770)
Q Consensus 356 ~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~--~~~~l~ya~~l~~~ 433 (770)
..+..+.+.++.+.|...|++++...|.+..+++.+|.++... |++++|...|+++++..|+. +.++..++.++..+
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 5555566678888899999999998888899999999987775 99999999999999999987 78999999999999
Q ss_pred CChhHHHHHHHHHHh
Q 004187 434 NDDRNIRALFERALS 448 (770)
Q Consensus 434 g~~~~Ar~lferaL~ 448 (770)
|+.++|...|+++|.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999886
No 72
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.46 E-value=2.6e-13 Score=160.86 Aligned_cols=171 Identities=11% Similarity=-0.021 Sum_probs=158.3
Q ss_pred hhhhHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHH
Q 004187 262 SSNKRIIFTYEQCL--------MYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIA 333 (770)
Q Consensus 262 ~~~~r~~~~ye~aL--------~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e 333 (770)
..++.++..|++++ ..+|.+.++|+..|..+...|++++|++.|+++++..|++..+|+.+|.++...|+++
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 484 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYD 484 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHH
Confidence 35678889999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 004187 334 AAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 413 (770)
Q Consensus 334 ~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~al 413 (770)
+|...|+++++.+|. ...+|..++..+.+.|++++ +..|++|++..+....+|.++|.++... |++++|.+.|++++
T Consensus 485 ~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al 561 (681)
T 2pzi_A 485 SATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAE-GDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc-CCHHHHHHHHHhhc
Confidence 999999999999998 78999999999999999999 9999999999888899999999998885 99999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHhcCC
Q 004187 414 KRFMHEPAYILEYADFLSRLND 435 (770)
Q Consensus 414 k~~p~~~~~~l~ya~~l~~~g~ 435 (770)
+..|+++.+|+..+..+...+.
T Consensus 562 ~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 562 PTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTSTTHHHHHHHHHHHTC----
T ss_pred ccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999998877665
No 73
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.46 E-value=5.9e-12 Score=133.72 Aligned_cols=223 Identities=7% Similarity=-0.037 Sum_probs=193.1
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHh---CcHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG--SIDAAIKVFQRALKALPDSEMLRYAFAELE----ESR---GAIA 333 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g--~~e~A~~v~erAi~~~P~s~~lw~~~a~~~----~~~---g~~e 333 (770)
..++++.+++++|..+|.+..+|..-+.++...+ +++++++.+++++..+|++..+|...+.++ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3467899999999999999999999999999999 999999999999999999999999988888 666 7889
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC------HHHH
Q 004187 334 AAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE--AARKYFLDARKSPNFTYHVYVAYALMAFCQDKD------PKLA 405 (770)
Q Consensus 334 ~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e--~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~------~~~A 405 (770)
++..+++++++.+|. +..+|....-...+.+.++ ++.++++++++.++.+.++|...+.+.... +. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l-~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK-KHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS-GGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cccchhhhHHHH
Confidence 999999999999998 8899999998888888888 999999999999999999999998887765 55 8999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004187 406 HNVFEAGLKRFMHEPAYILEYADFLSRLNDD-RNIRALFERALSSL-PPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRK 483 (770)
Q Consensus 406 ~~ife~alk~~p~~~~~~l~ya~~l~~~g~~-~~Ar~lferaL~~~-p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~ 483 (770)
.+.+++++...|++...|.....++...|.. +.+..+.++++... ..-.+...|...+....+.|+.+.+.+++.++.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999999999999999888888888864 55667777777643 011345667777777668899999999999988
Q ss_pred Hh-cc
Q 004187 484 EA-LS 487 (770)
Q Consensus 484 ~~-~~ 487 (770)
+. .|
T Consensus 286 ~~~Dp 290 (306)
T 3dra_A 286 SKYNP 290 (306)
T ss_dssp HTTCG
T ss_pred hccCh
Confidence 74 44
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=4.6e-12 Score=121.54 Aligned_cols=168 Identities=12% Similarity=0.005 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004187 316 EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMA 395 (770)
Q Consensus 316 ~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le 395 (770)
..+|+.++.++...|++++|...|+++++..|. ...+|..++..+...|++++|..+|+++++..+....+|..++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 567788899999999999999999999999887 6889999999999999999999999999998888899999999987
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 004187 396 FCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDST 475 (770)
Q Consensus 396 ~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~ 475 (770)
... |++++|.++|+++++..|+++.++..++..+...|++++|..+|++++...| ....+|..++......|+.+.+
T Consensus 87 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQV-QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP--NEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHh-cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCHHHH
Confidence 775 9999999999999999999999999999999999999999999999999887 5578888999999999999999
Q ss_pred HHHHHHHHHhcc
Q 004187 476 LKVEQRRKEALS 487 (770)
Q Consensus 476 ~k~~~R~~~~~~ 487 (770)
.+.++++.+..|
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 999999999888
No 75
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=8.3e-13 Score=139.13 Aligned_cols=224 Identities=8% Similarity=-0.039 Sum_probs=185.4
Q ss_pred hhhHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhCcH
Q 004187 263 SNKRIIFTYEQCLMYLYHYP----DIWYDYATWNAKSGSIDAAIKVFQRALKA------LPDSEMLRYAFAELEESRGAI 332 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~----~~w~~~a~~l~~~g~~e~A~~v~erAi~~------~P~s~~lw~~~a~~~~~~g~~ 332 (770)
.++.++..|++++...|.++ .+|..++.++...|++++|+..|++++.. .|....++..++.++...|++
T Consensus 20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 99 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF 99 (338)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCH
Confidence 45678889999999999984 68899999999999999999999999887 334467888999999999999
Q ss_pred HHHHHHHHHHhccCCCC-----cHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHcC------C
Q 004187 333 AAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEG--------------------VEAARKYFLDARKS------P 381 (770)
Q Consensus 333 e~A~~iye~al~~~p~~-----~~~~w~~~~~~~~r~~~--------------------~e~A~~~f~~Al~~------~ 381 (770)
++|...|++++...+.. ...++..++..+...|+ ++.|...|++++.. .
T Consensus 100 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~ 179 (338)
T 3ro2_A 100 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR 179 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 99999999998764421 23478888999999999 99999999998753 2
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc---
Q 004187 382 NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------PAYILEYADFLSRLNDDRNIRALFERALSSLPP--- 452 (770)
Q Consensus 382 ~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~------~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~--- 452 (770)
+....++..++.+.... |++++|...|+++++..+.. ...+..++.++...|++++|..+|++++...+.
T Consensus 180 ~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 180 AAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 22345677788887775 99999999999999875432 237888899999999999999999999986441
Q ss_pred -hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 453 -EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 453 -~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.....++..++......|+.+.+...++++.+..+
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 12266778888888899999999999999998887
No 76
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=1.2e-12 Score=142.64 Aligned_cols=224 Identities=8% Similarity=-0.031 Sum_probs=182.2
Q ss_pred hhhHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHhCcH
Q 004187 263 SNKRIIFTYEQCLMYLYHYP----DIWYDYATWNAKSGSIDAAIKVFQRALKAL------PDSEMLRYAFAELEESRGAI 332 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~----~~w~~~a~~l~~~g~~e~A~~v~erAi~~~------P~s~~lw~~~a~~~~~~g~~ 332 (770)
.++.++..|++++...|.++ .+|..++.++...|++++|...|++++... |....++..++.++...|++
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 103 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF 103 (406)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCH
Confidence 45677889999999999885 689999999999999999999999998762 34467788899999999999
Q ss_pred HHHHHHHHHHhccCCCC-----cHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHcC------C
Q 004187 333 AAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEG--------------------VEAARKYFLDARKS------P 381 (770)
Q Consensus 333 e~A~~iye~al~~~p~~-----~~~~w~~~~~~~~r~~~--------------------~e~A~~~f~~Al~~------~ 381 (770)
++|...|++++...+.. ...++..++..+...|+ ++.|...|+++++. .
T Consensus 104 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 183 (406)
T 3sf4_A 104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR 183 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 99999999998765431 24578888999999999 99999999998763 2
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc---
Q 004187 382 NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------PAYILEYADFLSRLNDDRNIRALFERALSSLPP--- 452 (770)
Q Consensus 382 ~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~------~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~--- 452 (770)
+....++..+|.+.... |++++|...|+++++..+.. ...+...+.++...|++++|..+|++++...+.
T Consensus 184 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHH-TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 22345677888887775 99999999999999875432 237788899999999999999999999976441
Q ss_pred -hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 453 -EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 453 -~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.....++..++......|+.+.+...++++.+..+
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 12256778888888889999999999999988876
No 77
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.43 E-value=9.7e-13 Score=127.72 Aligned_cols=167 Identities=13% Similarity=0.042 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 279 p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
|...+.++..+..+...|++++|+..|+++++..|++..+|+.+|.++...|++++|...|++++...| . ...+...+
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHHHHHH
Confidence 444567888899999999999999999999999999999999999999999999999999999999887 2 44444333
Q ss_pred HHHH-HhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhcCC
Q 004187 359 RFLR-RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE--PAYILEYADFLSRLND 435 (770)
Q Consensus 359 ~~~~-r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~--~~~~l~ya~~l~~~g~ 435 (770)
.+.. ..++...|+..|+++++..|.+..+++.++.++... |++++|...|+++++..|+. +..|..++.++..+|+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV-GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 3322 222334568888888888777788888888887775 88888888888888888764 5688888888888888
Q ss_pred hhHHHHHHHHHHh
Q 004187 436 DRNIRALFERALS 448 (770)
Q Consensus 436 ~~~Ar~lferaL~ 448 (770)
.++|...|+++|.
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8888888888875
No 78
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.43 E-value=8.6e-12 Score=126.19 Aligned_cols=190 Identities=9% Similarity=0.013 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc--HHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHI 355 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~--~~~w~ 355 (770)
.++.++..|..+...|++++|+..|++++...|++ ..+++.+|.++...|++++|...|+++++..|... ..+|+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 56788999999999999999999999999998876 46888999999999999999999999999888732 23666
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHH------------
Q 004187 356 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI------------ 423 (770)
Q Consensus 356 ~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~------------ 423 (770)
.++..+...+.. . ...|...+..... .|+.++|...|+++++.+|+++..+
T Consensus 83 ~~g~~~~~~~~~-----~-----------~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDS-----A-----------LQGFFGVDRSDRD-PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC------------------------------C-CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----h-----------hhhhhccchhhcC-cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 666555442210 0 0111111221111 2344444444444444444433222
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 424 -----LEYADFLSRLNDDRNIRALFERALSSLPPEE-SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 424 -----l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~-~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+..+.++...|++++|...|+++++..|... ....|...+......|+.+.+.+.++++....|
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 3456666677777777777777777666222 235666666666667777777777776666665
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.42 E-value=1.3e-12 Score=134.39 Aligned_cols=217 Identities=12% Similarity=0.045 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHH-------c-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHh
Q 004187 266 RIIFTYEQCLMY-------L-YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL--------PDSEMLRYAFAELEESR 329 (770)
Q Consensus 266 r~~~~ye~aL~~-------~-p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~--------P~s~~lw~~~a~~~~~~ 329 (770)
.++..|++++.. . |....+|..++.++...|++++|+..|++++... |....++..+|.++...
T Consensus 19 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (283)
T 3edt_B 19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 98 (283)
T ss_dssp SHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 345556666653 2 5567899999999999999999999999999873 55677899999999999
Q ss_pred CcHHHHHHHHHHHhccC--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC--------CCCCHHHHHHHHH
Q 004187 330 GAIAAAKKLYESLLTDS--------VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS--------PNFTYHVYVAYAL 393 (770)
Q Consensus 330 g~~e~A~~iye~al~~~--------p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~--------~~~~~~~yi~~a~ 393 (770)
|++++|...|++++... +. ...+|..++..+...|++++|..+|+++++. .+....++..+|.
T Consensus 99 g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 99 GKYKEAEPLCKRALEIREKVLGKFHPD-VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999872 33 4678899999999999999999999999976 3444677888898
Q ss_pred HHHhcCCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHhcCChh------HHHHHHHHHHhCCCchhHHHH
Q 004187 394 MAFCQDKDPKLAHNVFEAGLKR---------FMHEPAYILEYADFLSRLNDDR------NIRALFERALSSLPPEESIEV 458 (770)
Q Consensus 394 le~~~~g~~~~A~~ife~alk~---------~p~~~~~~l~ya~~l~~~g~~~------~Ar~lferaL~~~p~~~~~~l 458 (770)
+.... |++++|..+|+++++. .+....+|.....+....+... .+...++.+.... .....+
T Consensus 178 ~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 254 (283)
T 3edt_B 178 CYLKQ-GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS--PTVNTT 254 (283)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC--HHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC--HHHHHH
Confidence 87776 9999999999999986 2334456666666665544333 2333333222222 255678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 459 WKRFTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 459 w~~~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
|..++.+....|+.+.+.+.++++.+..
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 8888888889999999999999887653
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.7e-12 Score=136.00 Aligned_cols=188 Identities=15% Similarity=0.049 Sum_probs=159.6
Q ss_pred hhhHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMY--------LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKAL--------PDSEMLRYAFAELE 326 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~--------~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~--------P~s~~lw~~~a~~~ 326 (770)
.++.++..|++++.. .+....+|..++.++...|++++|+..|++++... |....++..++.++
T Consensus 42 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (311)
T 3nf1_A 42 RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY 121 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 456778889999884 56677899999999999999999999999999873 55677889999999
Q ss_pred HHhCcHHHHHHHHHHHhccC-----CC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC--------CCCCHHHHHHH
Q 004187 327 ESRGAIAAAKKLYESLLTDS-----VN--TTALAHIQFIRFLRRTEGVEAARKYFLDARKS--------PNFTYHVYVAY 391 (770)
Q Consensus 327 ~~~g~~e~A~~iye~al~~~-----p~--~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~--------~~~~~~~yi~~ 391 (770)
...|++++|...|+++++.. +. ....+|..++..+...|++++|+.+|+++++. .+....++..+
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNL 201 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999863 11 14567889999999999999999999999875 33345678888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHh-------------------------------------------------CCCcHHH
Q 004187 392 ALMAFCQDKDPKLAHNVFEAGLKR-------------------------------------------------FMHEPAY 422 (770)
Q Consensus 392 a~le~~~~g~~~~A~~ife~alk~-------------------------------------------------~p~~~~~ 422 (770)
|.++... |++++|...|+++++. .|..+.+
T Consensus 202 a~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 280 (311)
T 3nf1_A 202 ASCYLKQ-GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTT 280 (311)
T ss_dssp HHHHHHH-TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHH
Confidence 8887775 9999999999999974 2445678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 423 ILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 423 ~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
|..++.++..+|++++|..+|+++++..|
T Consensus 281 ~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 281 LKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999998654
No 81
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.39 E-value=4.6e-12 Score=126.72 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=131.6
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYD----------------YATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELE 326 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~----------------~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~ 326 (770)
.++.++..|++++..+|.++++|+. +|.++...|++++|+..|+++++..|++..+|+.+|.++
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 98 (208)
T 3urz_A 19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQ 98 (208)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4567888999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 004187 327 ESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE--GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKL 404 (770)
Q Consensus 327 ~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~--~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~ 404 (770)
...|++++|...|+++++.+|. ...+|+.++.++...+ ..+.+...|++++..++. ...+...+...... |++++
T Consensus 99 ~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~-~~~~~ 175 (208)
T 3urz_A 99 VCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFT-TRYEK 175 (208)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHH-HTHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHc-cCHHH
Confidence 9999999999999999999998 7899999998876554 356677888888754432 33455556665554 89999
Q ss_pred HHHHHHHHHHhCCCc
Q 004187 405 AHNVFEAGLKRFMHE 419 (770)
Q Consensus 405 A~~ife~alk~~p~~ 419 (770)
|+..|+++++.+|+.
T Consensus 176 A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 176 ARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHhCCCH
Confidence 999999999999985
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.39 E-value=1.4e-12 Score=123.62 Aligned_cols=146 Identities=13% Similarity=0.147 Sum_probs=127.6
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 004187 322 FAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD 401 (770)
Q Consensus 322 ~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~ 401 (770)
+|.++...|++++|...|++++...|. ....|+.++.++.+.|++++|+..|+++++..|.+..+|..+|.+.... |+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE-EN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-Cc
Confidence 466777789999999999999998887 6788999999999999999999999999999998999999999998775 99
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHH-HHHHHHHhCCCchhHHHHHHHHHHHHHHcCC
Q 004187 402 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIR-ALFERALSSLPPEESIEVWKRFTQFEQMYGD 471 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar-~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd 471 (770)
+++|...|+++++..|+++.+|..++.++...|++++|. ..+++|++..| ++..+|.....+....|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P--~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP--GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST--TCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999987655 55699999999 677888777776666664
No 83
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.38 E-value=2.6e-12 Score=124.63 Aligned_cols=172 Identities=13% Similarity=0.023 Sum_probs=144.0
Q ss_pred CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004187 312 LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAY 391 (770)
Q Consensus 312 ~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~ 391 (770)
+|.....++..|..+...|++++|...|+++++..|. ...+|+.++..+.+.|++++|+..|++++...+ ....+...
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHH
Confidence 3444456778899999999999999999999999998 789999999999999999999999999998877 56555544
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCC
Q 004187 392 ALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGD 471 (770)
Q Consensus 392 a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd 471 (770)
+.+.....++...|...|+++++..|+++.+++.++.++...|++++|...|+++++..|.......|..++......|+
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 54433221334458999999999999999999999999999999999999999999998843446688888888889999
Q ss_pred HHHHHHHHHHHHHh
Q 004187 472 LDSTLKVEQRRKEA 485 (770)
Q Consensus 472 ~~~~~k~~~R~~~~ 485 (770)
.+.+...+++++..
T Consensus 160 ~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 160 GNAIASKYRRQLYS 173 (176)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 99999998888764
No 84
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.36 E-value=2e-10 Score=129.25 Aligned_cols=353 Identities=11% Similarity=0.068 Sum_probs=210.1
Q ss_pred HHH-HhcCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Q 004187 29 LAN-SALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNND---DATKQLFSRCLLICLQVPLWRCYIRFIRKVYE 104 (770)
Q Consensus 29 l~~-~~~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~---~~a~~ifeRaL~~~p~~~lW~~y~~~~~~~~~ 104 (770)
++. .++.+++++|...|+++... .+...+..++.++...|+. ++|...|++++.. +++.+...+......+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCC
Confidence 444 33456899999999999876 4667788888888888877 8999999999987 55556666663332221
Q ss_pred ccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcc--ccc--cHHHHHH
Q 004187 105 KKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT--PTH--HVEQLWK 180 (770)
Q Consensus 105 ~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~--P~~--~~~~l~~ 180 (770)
....+.+++.+.|++++.. .....+..+..+........ .. ..+...|.++... +.. .+..++
T Consensus 85 -~~~~~~~~A~~~~~~Aa~~-----g~~~A~~~Lg~~y~~~~~~~-----~~-~~a~~~~~~a~~~g~~~a~~~Lg~~y- 151 (452)
T 3e4b_A 85 -ATEAEHHEAESLLKKAFAN-----GEGNTLIPLAMLYLQYPHSF-----PN-VNAQQQISQWQAAGYPEAGLAQVLLY- 151 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHT-----TCSSCHHHHHHHHHHCGGGC-----TT-CCHHHHHHHHHHHTCTTHHHHHHHHH-
T ss_pred -CCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhCCCCC-----CC-HHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 1123578899999998873 12235666555544321100 00 1233334443322 110 111111
Q ss_pred HHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHH-HHHcCCCCCC
Q 004187 181 DYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLT-FEKGNPQRID 259 (770)
Q Consensus 181 ~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~-~ek~n~~~ld 259 (770)
.. . ....+....+..+++. . ....|. .+..+.. +.+ . .+
T Consensus 152 --~~---~----------~~~~~~~~~a~~~~~~-------a----~~~~~~----------a~~~Lg~~~~~-~--g~- 191 (452)
T 3e4b_A 152 --RT---Q----------GTYDQHLDDVERICKA-------A----LNTTDI----------CYVELATVYQK-K--QQ- 191 (452)
T ss_dssp --HH---H----------TCGGGGHHHHHHHHHH-------H----TTTCTT----------HHHHHHHHHHH-T--TC-
T ss_pred --Hc---C----------CCcccCHHHHHHHHHH-------H----HcCCHH----------HHHHHHHHHHH-c--CC-
Confidence 00 0 0011122223332221 1 111121 1222221 111 1 11
Q ss_pred cchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-H--HHhCcH
Q 004187 260 TASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS----GSIDAAIKVFQRALKALPDSEMLRYAFAEL-E--ESRGAI 332 (770)
Q Consensus 260 ~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~----g~~e~A~~v~erAi~~~P~s~~lw~~~a~~-~--~~~g~~ 332 (770)
....+.++..|+++....+.....++.++.++... +++++|+..|+++. |++...++.++.+ + ...+++
T Consensus 192 -~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 192 -PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH
T ss_pred -cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH
Confidence 12567788899999999999999999999998665 68999999999998 8999999999998 4 457899
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCCHHH
Q 004187 333 AAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE-----GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ---DKDPKL 404 (770)
Q Consensus 333 e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~-----~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~---~g~~~~ 404 (770)
++|...|+++++.. ...+++.++.++. .| ++++|..+|++|. +....++.+++.+...- .++.++
T Consensus 268 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 99999999999765 4688888888877 55 8999999999999 44578888888875541 248999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 004187 405 AHNVFEAGLKRFMHEPAYILEYADFLSR----LNDDRNIRALFERALSSLP 451 (770)
Q Consensus 405 A~~ife~alk~~p~~~~~~l~ya~~l~~----~g~~~~Ar~lferaL~~~p 451 (770)
|...|+++.+. .++.....++.++.. ..++.+|..+|++|...-.
T Consensus 341 A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 341 ALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999875 345556666666654 3488999999999998644
No 85
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.35 E-value=1.4e-11 Score=142.62 Aligned_cols=154 Identities=12% Similarity=-0.015 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
+.++..|++++..+|.+..+|+.+|..+...|++++|++.|+++++..|++..+|+.+|.++...|++++|.+.|+++++
T Consensus 6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 85 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCcH
Q 004187 345 DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD---KDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 345 ~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~---g~~~~A~~ife~alk~~p~~~ 420 (770)
..|. ...+|..++..+.+.|++++|+..|+++++..+....++..++.++.. . |+.++|.+.|+++++..|++.
T Consensus 86 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 86 AAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhccccHHHHHHHHHHHHhcCCccc
Confidence 5554 344555555555555555555555555554444444444444444333 2 445555555555555544433
No 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.35 E-value=2.5e-11 Score=127.96 Aligned_cols=173 Identities=13% Similarity=0.008 Sum_probs=152.4
Q ss_pred hCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHH
Q 004187 311 ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 390 (770)
Q Consensus 311 ~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~ 390 (770)
..|.+...++..|..+...|++++|...|+++++..|. ...+++.++..+.+.|++++|+.+|++++...+.....++.
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 45999999999999999999999999999999999998 78999999999999999999999999999877753433333
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcC
Q 004187 391 YALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 391 ~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~G 470 (770)
.+..+.. .++.+.|...|+++++..|+++.+++.++..+...|++++|...|+++++..|.......|..++.+....|
T Consensus 191 ~~~~l~~-~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLX-QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHH-HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHh-hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3333334 377888999999999999999999999999999999999999999999999985555889999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 004187 471 DLDSTLKVEQRRKEA 485 (770)
Q Consensus 471 d~~~~~k~~~R~~~~ 485 (770)
+.+.+...++|+...
T Consensus 270 ~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 270 TGDALASXYRRQLYA 284 (287)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 999998888888764
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=6.2e-12 Score=129.38 Aligned_cols=154 Identities=12% Similarity=0.057 Sum_probs=131.7
Q ss_pred HcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC--------CCCcHHHHHHH
Q 004187 294 KSGSIDAAIKVFQRALKA--------LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS--------VNTTALAHIQF 357 (770)
Q Consensus 294 ~~g~~e~A~~v~erAi~~--------~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~--------p~~~~~~w~~~ 357 (770)
..|++++|+..|++|+.. .|....+|..+|.++...|++++|...|++++... +. ...+|..+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA-VAATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH-HHHHHHHH
Confidence 457788888888888874 25567889999999999999999999999999763 22 46788999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--------CCCcHH
Q 004187 358 IRFLRRTEGVEAARKYFLDARKS--------PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR--------FMHEPA 421 (770)
Q Consensus 358 ~~~~~r~~~~e~A~~~f~~Al~~--------~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~--------~p~~~~ 421 (770)
+..+...|++++|+.+|++++.. .+....+|..+|.+.... |++++|..+|+++++. .|....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ-GKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999999875 233567888899887775 9999999999999998 455567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 422 YILEYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 422 ~~l~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
++..++.++..+|++++|..+|+++++.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999985
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=2.9e-11 Score=124.76 Aligned_cols=177 Identities=12% Similarity=0.055 Sum_probs=151.0
Q ss_pred HHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC---
Q 004187 309 LKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT---ALAHIQFIRFLRRTEGVEAARKYFLDARKSPN--- 382 (770)
Q Consensus 309 i~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~---~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~--- 382 (770)
....|.+...++..|..+...|++++|...|+++++..|. . ..+|+.++..+.+.|++++|+..|+++++..|
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 4457889999999999999999999999999999999887 4 78999999999999999999999999998644
Q ss_pred CCHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHHHHhcCChh
Q 004187 383 FTYHVYVAYALMAFC--------QDKDPKLAHNVFEAGLKRFMHEPAYI-----------------LEYADFLSRLNDDR 437 (770)
Q Consensus 383 ~~~~~yi~~a~le~~--------~~g~~~~A~~ife~alk~~p~~~~~~-----------------l~ya~~l~~~g~~~ 437 (770)
....++..+|.+.+. . |++++|...|+++++.+|+++..+ +..+.++...|+++
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 336678888888766 5 999999999999999999986555 67799999999999
Q ss_pred HHHHHHHHHHhCCCchh-HHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcc
Q 004187 438 NIRALFERALSSLPPEE-SIEVWKRFTQFEQMY----------GDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 438 ~Ar~lferaL~~~p~~~-~~~lw~~~~~fE~~~----------Gd~~~~~k~~~R~~~~~~ 487 (770)
+|...|+++++..|... ....|...+...... |+.+.+.+.++++.+.+|
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 99999999999888322 456677766666554 888899999999999998
No 89
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.33 E-value=2.9e-09 Score=129.58 Aligned_cols=177 Identities=11% Similarity=0.028 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 363 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r 363 (770)
.|..++..+...|++++|++.+.+| .+...|...+......|++..|+.+... +..+ ++..-.++.++.+
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~----~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH----ADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC----HHHHHHHHHHHHH
Confidence 4555555555555555555555555 3345555544444445555555554432 2211 2334466777888
Q ss_pred hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHhcCChh
Q 004187 364 TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFC-QDKDPKLAHNVFEAGLKRFM-----HEPAYILEYADFLSRLNDDR 437 (770)
Q Consensus 364 ~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~-~~g~~~~A~~ife~alk~~p-----~~~~~~l~ya~~l~~~g~~~ 437 (770)
.|.+++|+.+|+.++..++.+...|-.++.++.+ ..++.-++.+.|+.-+...+ .++.+|..++-+|.+.++++
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 8899999999999988887666677555554332 13567778888887777655 57788888888888888888
Q ss_pred HHHHH--------HHHHH--hCCCchhHHHHHHHHHHHHHHcC
Q 004187 438 NIRAL--------FERAL--SSLPPEESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 438 ~Ar~l--------feraL--~~~p~~~~~~lw~~~~~fE~~~G 470 (770)
+|... |+.-+ ..+....+.+++++.+.|....+
T Consensus 1373 nA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1373 NAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 88722 21111 01112345788888888877666
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=1.8e-11 Score=129.20 Aligned_cols=196 Identities=11% Similarity=0.064 Sum_probs=144.1
Q ss_pred hhhHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHh-
Q 004187 263 SNKRIIFTYEQCLMYLYH------YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESR- 329 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~------~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s------~~lw~~~a~~~~~~- 329 (770)
.++.++..|++++...+. ...+|..++.++...|++++|+..|++|+...|.. ...+..+|.++...
T Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~l 131 (292)
T 1qqe_A 52 ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL 131 (292)
T ss_dssp CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 345667788888876432 25689999999999999999999999999887643 45788889999996
Q ss_pred CcHHHHHHHHHHHhccCCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHh
Q 004187 330 GAIAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTY-------HVYVAYALMAFC 397 (770)
Q Consensus 330 g~~e~A~~iye~al~~~p~~-----~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~-------~~yi~~a~le~~ 397 (770)
|++++|...|+++++..+.. ...+|..++.++.+.|++++|+.+|+++++..+... ..|..++.+...
T Consensus 132 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 211 (292)
T 1qqe_A 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211 (292)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 99999999999999876532 145788889999999999999999999998654322 257777777666
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH--hcCChhHHHHHHHHHHhCCCchhHHHHHHH
Q 004187 398 QDKDPKLAHNVFEAGLKRFMHEPA-----YILEYADFLS--RLNDDRNIRALFERALSSLPPEESIEVWKR 461 (770)
Q Consensus 398 ~~g~~~~A~~ife~alk~~p~~~~-----~~l~ya~~l~--~~g~~~~Ar~lferaL~~~p~~~~~~lw~~ 461 (770)
. |+++.|...|+++++..|+... ++...+..+. ..+++++|...|++++...| ....+|.+
T Consensus 212 ~-g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~--~~~~~~~~ 279 (292)
T 1qqe_A 212 A-TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK--WKITILNK 279 (292)
T ss_dssp T-TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH--HHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH--HHHHHHHH
Confidence 4 9999999999999998877543 2333444443 34678888888888877655 44444443
No 91
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.32 E-value=2.8e-11 Score=140.06 Aligned_cols=155 Identities=12% Similarity=0.030 Sum_probs=130.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004187 295 SGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF 374 (770)
Q Consensus 295 ~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f 374 (770)
.|++++|++.|+++++..|++..+|+.+|.++...|++++|...|+++++..|. ...+|..++..+...|++++|...|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCC
Q 004187 375 LDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL---NDDRNIRALFERALSSLP 451 (770)
Q Consensus 375 ~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~---g~~~~Ar~lferaL~~~p 451 (770)
+++++..+....+|..+|.++... |++++|.+.|+++++..|+++.++..++.++..+ |++++|...|+++++..|
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 999999888899999999998775 9999999999999999999999999999999999 999999999999999877
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=9.2e-11 Score=105.74 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~ 362 (770)
++|+.++..+...|++++|..+|++++...|.+...|+.++.++...|++++|..+|++++...+. ...+|..++..+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 467777788888888888888888888888877777777777777778888888888877777665 4566666666666
Q ss_pred HhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 363 RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 363 r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
..|++++|..+|+++++..+....++..++.+.... |++++|...|+++++..|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-ccHHHHHHHHHHHHccCCC
Confidence 666666666666666655554555555555554443 6666666666666655543
No 93
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.31 E-value=7.6e-10 Score=118.87 Aligned_cols=221 Identities=6% Similarity=-0.064 Sum_probs=180.1
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-C-cHHHHHHHHH
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG-SIDAAIKVFQRALKALPDSEMLRYAFAELEESR-G-AIAAAKKLYE 340 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g-~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~-g-~~e~A~~iye 340 (770)
.++++.+++++|..+|.+..+|.....++...+ .++++++.+++++..+|++..+|.....++... + +++++.++++
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 467899999999999999999999999999999 599999999999999999999999999998887 7 8899999999
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC-------HHHH
Q 004187 341 SLLTDSVNTTALAHIQFIRFLRRTEGVE--------AARKYFLDARKSPNFTYHVYVAYALMAFCQDKD-------PKLA 405 (770)
Q Consensus 341 ~al~~~p~~~~~~w~~~~~~~~r~~~~e--------~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~-------~~~A 405 (770)
++++.+|. +..+|....-...+.+.++ ++.+.++++++..+.+..+|...+.+.... +. ++++
T Consensus 150 k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l-~~~~~~~~~~~eE 227 (349)
T 3q7a_A 150 GSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR-PGAETSSRSLQDE 227 (349)
T ss_dssp HHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS-TTCCCCHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cccccchHHHHHH
Confidence 99999998 7899998887777777666 899999999999998999999999887765 54 6899
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhcCChh-----------------HHHHHHHHHHhCCCc-------hhHHHHHHH
Q 004187 406 HNVFEAGLKRFMHEPAYILEYADFLSRLNDDR-----------------NIRALFERALSSLPP-------EESIEVWKR 461 (770)
Q Consensus 406 ~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~-----------------~Ar~lferaL~~~p~-------~~~~~lw~~ 461 (770)
.+.+++++...|++...|.....++...|... ..-.+-+-++..... -.+.-.+..
T Consensus 228 Le~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~ 307 (349)
T 3q7a_A 228 LIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEY 307 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHH
Confidence 99999999999999999987676666666531 112344445544332 145567777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Q 004187 462 FTQFEQMYGDLDSTLKVEQRRKEAL 486 (770)
Q Consensus 462 ~~~fE~~~Gd~~~~~k~~~R~~~~~ 486 (770)
.+......|+.+.+.++++...+.+
T Consensus 308 l~d~~~~~~~~~~a~~~~~~l~~~~ 332 (349)
T 3q7a_A 308 LADSFIEQNRVDDAAKVFEKLSSEY 332 (349)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhh
Confidence 7777777899888888888876544
No 94
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.31 E-value=1.8e-08 Score=122.71 Aligned_cols=316 Identities=10% Similarity=0.010 Sum_probs=211.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 004187 63 VEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFL 142 (770)
Q Consensus 63 i~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi~fl 142 (770)
+..+...|.+++|..+|+++-.. ......+ +...++ .+++.+.+++ ..+..+|..|....
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~---~~A~~VL---ie~i~n------ldrAiE~Aer--------vn~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN---TSAVQVL---IEHIGN------LDRAYEFAER--------CNEPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH---HHHHHHH---HHHHhh------HHHHHHHHHh--------cCCHHHHHHHHHHH
Confidence 55666778889999999998311 1111111 212222 3455555552 24568999998886
Q ss_pred hhCCcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 004187 143 KSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEI 222 (770)
Q Consensus 143 ~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~~~~L 222 (770)
+ ..+++++|...|.+| ..+. .+.. -.. ..+..++|+.|.+.|.......
T Consensus 1116 l---------~~G~~kEAIdsYiKA-dD~s----ay~e-Va~-------------~~~~lGkyEEAIeyL~mArk~~--- 1164 (1630)
T 1xi4_A 1116 L---------QKGMVKEAIDSYIKA-DDPS----SYME-VVQ-------------AANTSGNWEELVKYLQMARKKA--- 1164 (1630)
T ss_pred H---------hCCCHHHHHHHHHhc-CChH----HHHH-HHH-------------HHHHcCCHHHHHHHHHHHHhhc---
Confidence 5 467899999999887 1121 1111 011 1122467777777766422211
Q ss_pred hhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Q 004187 223 DWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI 302 (770)
Q Consensus 223 ~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~ 302 (770)
+... +..+. -..+.+.+. +..++..+ ...+...|..+|..+...|++++|.
T Consensus 1165 --------~e~~------Idt~L-afaYAKl~r------------leele~fI--~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1165 --------RESY------VETEL-IFALAKTNR------------LAELEEFI--NGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred --------cccc------ccHHH-HHHHHhhcC------------HHHHHHHH--hCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 1000 01111 112222211 11344444 2334467889999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC
Q 004187 303 KVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 303 ~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~ 382 (770)
..|.++ ..|..++.++.+.|++++|.+.+.++. +..+|...+..+...+.+..|+.+....+..
T Consensus 1216 ~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~-- 1279 (1630)
T 1xi4_A 1216 LLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-- 1279 (1630)
T ss_pred HHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhcC--
Confidence 999996 479999999999999999999999982 3689999999999999999999988753332
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCC---chhHHH
Q 004187 383 FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL--NDDRNIRALFERALSSLP---PEESIE 457 (770)
Q Consensus 383 ~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~--g~~~~Ar~lferaL~~~p---~~~~~~ 457 (770)
.+.+-.++..+.. .|.+++|..+||.++...+....+|..++.++.+. ++..++..+|...+..-+ ......
T Consensus 1280 --~deLeeli~yYe~-~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1280 --ADELEELINYYQD-RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 1356 (1630)
T ss_pred --HHHHHHHHHHHHH-cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHH
Confidence 2333344444444 59999999999999999988888998777777765 466677778887665321 235678
Q ss_pred HHHHHHHHHHHcCCHHHHHH
Q 004187 458 VWKRFTQFEQMYGDLDSTLK 477 (770)
Q Consensus 458 lw~~~~~fE~~~Gd~~~~~k 477 (770)
+|..++.+..++|+.+.+..
T Consensus 1357 lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHH
Confidence 99999999999999988773
No 95
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=5.3e-11 Score=130.12 Aligned_cols=222 Identities=8% Similarity=-0.030 Sum_probs=179.3
Q ss_pred hhhHHHHHHHHHHHHc---C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHh
Q 004187 263 SNKRIIFTYEQCLMYL---Y---HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS-------EMLRYAFAELEESR 329 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~---p---~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s-------~~lw~~~a~~~~~~ 329 (770)
.++.++..|++++... + ....+|+.+|.++...|++++|+..|++|+...+.. ...+..+|.++...
T Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 197 (383)
T 3ulq_A 118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL 197 (383)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh
Confidence 4567788999999762 2 245799999999999999999999999999975432 45778899999999
Q ss_pred CcHHHHHHHHHHHhccCCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHc-----CC-CCCHHHHHHHHHHHHhc
Q 004187 330 GAIAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEGVEAARKYFLDARK-----SP-NFTYHVYVAYALMAFCQ 398 (770)
Q Consensus 330 g~~e~A~~iye~al~~~p~~-----~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~-----~~-~~~~~~yi~~a~le~~~ 398 (770)
|++++|...|++++...+.. ...++..++..+...|++++|+..|+++++ .. +....++..+|.+....
T Consensus 198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (383)
T 3ulq_A 198 KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL 277 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC
Confidence 99999999999999764321 235888999999999999999999999998 44 55678899999988775
Q ss_pred CCCHHHHHHHHHHHHHhCCC--cH---HHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcC
Q 004187 399 DKDPKLAHNVFEAGLKRFMH--EP---AYILEYADFLSRLND---DRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 399 ~g~~~~A~~ife~alk~~p~--~~---~~~l~ya~~l~~~g~---~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~G 470 (770)
|++++|...|+++++..+. ++ ..+..++.++...|+ .++|..+++++ .. ......++...+.+....|
T Consensus 278 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~--~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 278 -GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-ML--YADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cC--HHHHHHHHHHHHHHHHHCC
Confidence 9999999999999987432 22 234557777788888 67777777766 11 1345678888888888999
Q ss_pred CHHHHHHHHHHHHHhccc
Q 004187 471 DLDSTLKVEQRRKEALSR 488 (770)
Q Consensus 471 d~~~~~k~~~R~~~~~~~ 488 (770)
+.+.+...++++.+....
T Consensus 354 ~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 354 NFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp CHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999988773
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.30 E-value=4.1e-10 Score=120.38 Aligned_cols=221 Identities=8% Similarity=-0.100 Sum_probs=182.4
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC--c
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS----------IDAAIKVFQRALKALPDSEMLRYAFAELEESRG--A 331 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~----------~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g--~ 331 (770)
.++++.+++.+|..+|.+..+|..-..++...++ +++++..++.++..+|++..+|...+-++...+ .
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 3578899999999999999999999999988765 688999999999999999999999999998888 4
Q ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------
Q 004187 332 IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG-VEAARKYFLDARKSPNFTYHVYVAYALMAFCQD----------- 399 (770)
Q Consensus 332 ~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~-~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~----------- 399 (770)
++++..+++++++.+|. +..+|....-.....+. .+++.+.++++++..+.+..+|...+.+.....
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 89999999999999998 78999999888888887 699999999999999999999999888776541
Q ss_pred --CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 004187 400 --KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL-----------NDDRNIRALFERALSSLPPEESIEVWKRFTQFE 466 (770)
Q Consensus 400 --g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~-----------g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE 466 (770)
+.++++.+.++.++...|++..+|...-.++... +.++++.+.++++++..| ++.=.+...+.+.
T Consensus 205 ~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p--d~~w~l~~~~~~~ 282 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLM 282 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc--ccchHHHHHHHHH
Confidence 3478899999999999999999996555454444 246788999999999888 3322223333332
Q ss_pred H---HcCCHHHHHHHHHHHHHhcc
Q 004187 467 Q---MYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 467 ~---~~Gd~~~~~k~~~R~~~~~~ 487 (770)
. ..|..+.+...+.+..+..|
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HhhcccccHHHHHHHHHHHHHhCc
Confidence 2 24666777788888888887
No 97
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.29 E-value=6.8e-10 Score=124.82 Aligned_cols=360 Identities=10% Similarity=0.009 Sum_probs=218.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 004187 60 KQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYI 139 (770)
Q Consensus 60 ~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~~y~~~~~~~~~~~~~~~~e~ar~~~e~aL~~ig~dp~s~~lW~~yi 139 (770)
..++....+.|++++|..+|+++.... +.+.+...+......+. ..+.+++.+.|+++++. + ...+..+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~~Lg~~y~~~g~---~~d~~~A~~~~~~A~~~---~---~~A~~~Lg 76 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-YSEAQVGLADIQVGTRD---PAQIKQAEATYRAAADT---S---PRAQARLG 76 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCTGGGTCC-------------------------------------CHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCC---CCCHHHHHHHHHHHHhC---C---HHHHHHHH
Confidence 346778888999999999999998763 34444444444333332 23457899999988754 2 34566666
Q ss_pred HHHhhCCcCchHHHHHHHHHHHHHHHHHHcc-ccccHHHHHHHHHHHHHHhhHhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004187 140 TFLKSLPALNAQEESQRMIAIRKAYQRAVVT-PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKY 218 (770)
Q Consensus 140 ~fl~~~~~~~~~~~~~~~~~ar~vyqral~~-P~~~~~~l~~~y~~fe~~~~~~la~~ll~e~~~~y~~A~~v~k~~~~~ 218 (770)
..+.... ....++.++|...|++++.. +......+-..|..... . .+. .++...+.+
T Consensus 77 ~~~~~~~----~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~-~------------~~~-~~a~~~~~~---- 134 (452)
T 3e4b_A 77 RLLAAKP----GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPH-S------------FPN-VNAQQQISQ---- 134 (452)
T ss_dssp HHHHTC------CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGG-G------------CTT-CCHHHHHHH----
T ss_pred HHHHhCC----CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCC-C------------CCC-HHHHHHHHH----
Confidence 5332210 00125788999999999976 32222222222221100 0 000 011111111
Q ss_pred HHHhhhhccCCCCCCChhhHHHHHHHHHHHH-HHHcCCCCCCcchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-
Q 004187 219 CEEIDWNMLAVPPTGSYKEEQQWIAWKRLLT-FEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG- 296 (770)
Q Consensus 219 ~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~-~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g- 296 (770)
..... . +. .+..+.. +..+. ..+ .....+..+++.+.. .++.+++.++.++...|
T Consensus 135 --a~~~g---~-~~----------a~~~Lg~~y~~~~--~~~--~~~~~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~ 191 (452)
T 3e4b_A 135 --WQAAG---Y-PE----------AGLAQVLLYRTQG--TYD--QHLDDVERICKAALN---TTDICYVELATVYQKKQQ 191 (452)
T ss_dssp --HHHHT---C-TT----------HHHHHHHHHHHHT--CGG--GGHHHHHHHHHHHTT---TCTTHHHHHHHHHHHTTC
T ss_pred --HHHCC---C-HH----------HHHHHHHHHHcCC--Ccc--cCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCC
Confidence 10000 0 10 1222211 12211 111 122334445555554 44559999999999999
Q ss_pred --CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh----CcHHHHHHHHHHHhccCCCCcHHHHHHHHHH-H--HHhcCH
Q 004187 297 --SIDAAIKVFQRALKALPDSEMLRYAFAELEESR----GAIAAAKKLYESLLTDSVNTTALAHIQFIRF-L--RRTEGV 367 (770)
Q Consensus 297 --~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~----g~~e~A~~iye~al~~~p~~~~~~w~~~~~~-~--~r~~~~ 367 (770)
+.++|+..|+++....|.....++.++.++... +++++|...|+++. +. ...+++.++.+ + ...+++
T Consensus 192 ~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g-~~~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 192 PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG-YPASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG-STHHHHHHHHHHHHSGGGCCH
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC-CHHHHHHHHHHHHhCCCCCCH
Confidence 899999999999999999999999999998765 79999999999998 44 56889998887 4 458999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----cCChhHHH
Q 004187 368 EAARKYFLDARKSPNFTYHVYVAYALMAFCQ---DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSR----LNDDRNIR 440 (770)
Q Consensus 368 e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~---~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~----~g~~~~Ar 440 (770)
++|..+|+++.+.+ ...++..++.+.... .+++++|...|+++. +.++..+..++.++.. ..++++|.
T Consensus 268 ~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~ 342 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD--QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKAL 342 (452)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHH
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHH
Confidence 99999999999876 478888888886531 129999999999999 8889999999988876 34899999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHH-H---cCCHHHHHHHHHHHHHhcc
Q 004187 441 ALFERALSSLPPEESIEVWKRFTQFEQ-M---YGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 441 ~lferaL~~~p~~~~~~lw~~~~~fE~-~---~Gd~~~~~k~~~R~~~~~~ 487 (770)
.+|+++.+.-. ......+..+.. - ..|...+...++++.+.-.
T Consensus 343 ~~~~~Aa~~g~----~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 343 DHLLTAARNGQ----NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTTC----TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhCh----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999998532 223333333332 1 2478888888888776543
No 98
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=1.5e-09 Score=118.54 Aligned_cols=184 Identities=10% Similarity=0.058 Sum_probs=146.6
Q ss_pred hhhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHh
Q 004187 263 SNKRIIFTYEQCLMYLYHY-------PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESR 329 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~-------~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s------~~lw~~~a~~~~~~ 329 (770)
.+..++..|++++...+.. ..++..+|.++...|++++|...|++++...+.. ..++..+|.++...
T Consensus 158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 4567888999999875544 3589999999999999999999999999875533 25788999999999
Q ss_pred CcHHHHHHHHHHHhc-----cC-CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhc
Q 004187 330 GAIAAAKKLYESLLT-----DS-VNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-----NFTYHVYVAYALMAFCQ 398 (770)
Q Consensus 330 g~~e~A~~iye~al~-----~~-p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~-----~~~~~~yi~~a~le~~~ 398 (770)
|++++|...|++++. .. +. ...++..++..+...|++++|...|+++++.. +.....+..++.+...
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~- 315 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPS-LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS- 315 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS-
T ss_pred CCHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-
Confidence 999999999999998 44 44 57889999999999999999999999998742 2112223445555444
Q ss_pred CCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 399 DKD---PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 399 ~g~---~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
.|+ .++|..++++. ...+....++...+.++...|++++|...|++++..
T Consensus 316 ~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 477 77777777665 223344567888999999999999999999999974
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=4e-11 Score=126.52 Aligned_cols=173 Identities=13% Similarity=0.008 Sum_probs=141.9
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhCcHHHHHH
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD------SEMLRYAFAELEESRGAIAAAKK 337 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~------s~~lw~~~a~~~~~~g~~e~A~~ 337 (770)
++.+...|+++ +.++...|++++|+..|++++...+. ....|..++.++...|++++|..
T Consensus 33 ~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 33 FEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 44556667766 55678899999999999999997532 25678899999999999999999
Q ss_pred HHHHHhccCCCC-----cHHHHHHHHHHHHHh-cCHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCCHHHH
Q 004187 338 LYESLLTDSVNT-----TALAHIQFIRFLRRT-EGVEAARKYFLDARKSPNF------TYHVYVAYALMAFCQDKDPKLA 405 (770)
Q Consensus 338 iye~al~~~p~~-----~~~~w~~~~~~~~r~-~~~e~A~~~f~~Al~~~~~------~~~~yi~~a~le~~~~g~~~~A 405 (770)
.|++++...+.. ...+|..++..+... |++++|+..|++|++..+. ...+|.++|.+.... |++++|
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A 177 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-GQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-CCHHHH
Confidence 999999876531 145788999999996 9999999999999975321 145688888887775 999999
Q ss_pred HHHHHHHHHhCCCcHH-------HHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 406 HNVFEAGLKRFMHEPA-------YILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 406 ~~ife~alk~~p~~~~-------~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
..+|+++++..|++.. ++...+.++..+|++++|...|++++...|
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999877543 577888999999999999999999999877
No 100
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.29 E-value=2.7e-11 Score=111.19 Aligned_cols=110 Identities=19% Similarity=0.314 Sum_probs=96.4
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 276 MYLYHYPDIWYDYATWNAKSGSI------DAAIKVFQRALKALPDS--------EMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 276 ~~~p~~~~~w~~~a~~l~~~g~~------e~A~~v~erAi~~~P~s--------~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
...|++++.|..|+..++..|+. ++.+++|+||+...|.. ..+|+.||.+. ..++.++|+++|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence 45799999999999999999999 99999999999998864 46899999885 45899999999999
Q ss_pred HhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHH
Q 004187 342 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHV 387 (770)
Q Consensus 342 al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~ 387 (770)
+++.+.. ++.+|+.|++|+.|+|++++||+++.+|+..++...++
T Consensus 86 a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 86 ARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 9988665 79999999999999999999999999999987764444
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.29 E-value=2.9e-11 Score=110.95 Aligned_cols=117 Identities=12% Similarity=-0.018 Sum_probs=95.1
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHH
Q 004187 276 MYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355 (770)
Q Consensus 276 ~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~ 355 (770)
..+|...+.|...|..+.+.|++++|++.|+++++..|.+..+|+.+|.++...|++++|...|+++++.+|. ...+|+
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 3567777888888888888888888888888888888888888888888888888888888888888888887 677888
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004187 356 QFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYAL 393 (770)
Q Consensus 356 ~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~ 393 (770)
.++..+...|++++|+..|+++++..|.+..++..++.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 88877777777777777777777777666666665554
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.25 E-value=1.3e-11 Score=117.32 Aligned_cols=113 Identities=16% Similarity=0.010 Sum_probs=106.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
.|++++..+|.+.++|+.+|..+.+.|++++|+..|++++...|++..+|+.+|.++...|++++|...|+++++.+|.
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~- 102 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN- 102 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-
Confidence 5688888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF 383 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~ 383 (770)
...+|+.++..+...|++++|+..|+++++..+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6789999999999999999999999999987664
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.24 E-value=3.2e-10 Score=114.54 Aligned_cols=157 Identities=10% Similarity=-0.006 Sum_probs=100.5
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCH---HHHH
Q 004187 315 SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT--ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTY---HVYV 389 (770)
Q Consensus 315 s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~--~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~---~~yi 389 (770)
+...++..|..+...|++++|...|+++++..|... ..+++.++..+.+.|++++|+..|+++++..|... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566777777777888888888888877766522 35777777777777777777777777776544432 2445
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHH-------------
Q 004187 390 AYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESI------------- 456 (770)
Q Consensus 390 ~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~------------- 456 (770)
.++.+.+.. +. .. ...+...+..+...|++++|...|+++++..|.....
T Consensus 83 ~~g~~~~~~-~~-----~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMAL-DD-----SA-----------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHH-HC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-hh-----hh-----------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 555443332 11 01 1112233444556789999999999999998832211
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 004187 457 --EVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 488 (770)
Q Consensus 457 --~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~~ 488 (770)
......+.+....|+...+...++++++.+|.
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 11145567777889999999999999999984
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=3.3e-10 Score=102.04 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004187 317 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAF 396 (770)
Q Consensus 317 ~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~ 396 (770)
..|+.++.++...|++++|..+|+++++..+. ...+|..++..+...+++++|+.+|+++++..+....++..++.+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 45788899999999999999999999998887 67889999999999999999999999999887777888888888877
Q ss_pred hcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 397 CQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 397 ~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
.. |++++|.++|+++++..|+++.+|..++.++...|++++|..+|++++...|
T Consensus 81 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred Hh-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 75 9999999999999999999999999999999999999999999999998765
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.23 E-value=7.1e-11 Score=108.30 Aligned_cols=121 Identities=11% Similarity=-0.007 Sum_probs=98.8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHH
Q 004187 307 RALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYH 386 (770)
Q Consensus 307 rAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~ 386 (770)
|+...+|+....|...|..+.+.|++++|.+.|+++++.+|. ...+|..++..+.+.|++++|+..|+++++..+....
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 334467778888888888888888888888888888888887 6788888888888888888888888888888777888
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004187 387 VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 429 (770)
Q Consensus 387 ~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~ 429 (770)
+|..+|.++... |++++|.+.|+++++..|++++++..+..+
T Consensus 83 a~~~lg~~~~~~-~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAM-REWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888887775 888888888888888888888877766654
No 106
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=5e-10 Score=122.26 Aligned_cols=221 Identities=12% Similarity=0.070 Sum_probs=174.6
Q ss_pred hhhHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHh
Q 004187 263 SNKRIIFTYEQCLMYLY------HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPD-------SEMLRYAFAELEESR 329 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p------~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~-------s~~lw~~~a~~~~~~ 329 (770)
.++.++..|++++.... ....+++.+|.++...|++++|+..+++|+...+. ....+..+|.++...
T Consensus 116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~ 195 (378)
T 3q15_A 116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF 195 (378)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Confidence 45677889999987643 24568999999999999999999999999987543 245677899999999
Q ss_pred CcHHHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcC
Q 004187 330 GAIAAAKKLYESLLTDSVN-----TTALAHIQFIRFLRRTEGVEAARKYFLDARK-----SPNFTYHVYVAYALMAFCQD 399 (770)
Q Consensus 330 g~~e~A~~iye~al~~~p~-----~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~-----~~~~~~~~yi~~a~le~~~~ 399 (770)
|++++|...|++++..... ....++..++..+...|++++|+..|+++++ ..+....++..+|.+....
T Consensus 196 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~- 274 (378)
T 3q15_A 196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA- 274 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHC-
Confidence 9999999999999985321 1345788899999999999999999999998 6665578888999988775
Q ss_pred CCHHHHHHHHHHHHHhCCC--c---HHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCC
Q 004187 400 KDPKLAHNVFEAGLKRFMH--E---PAYILEYADFLSRLND---DRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGD 471 (770)
Q Consensus 400 g~~~~A~~ife~alk~~p~--~---~~~~l~ya~~l~~~g~---~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd 471 (770)
|++++|...|+++++..+. + ...+.....++...++ ..+|...+++. .. ......++...+.+....|+
T Consensus 275 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~--~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NL--HAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CC--hhHHHHHHHHHHHHHHHCCC
Confidence 9999999999999998543 2 2334444555556677 66666666662 11 12456778888888889999
Q ss_pred HHHHHHHHHHHHHhcc
Q 004187 472 LDSTLKVEQRRKEALS 487 (770)
Q Consensus 472 ~~~~~k~~~R~~~~~~ 487 (770)
.+.+.+.++++.+...
T Consensus 352 ~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 352 FEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 107
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.21 E-value=7.1e-11 Score=124.07 Aligned_cols=189 Identities=9% Similarity=-0.078 Sum_probs=145.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 279 p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
|.+...|+..|..+...|++++|+..|++++...|++..+|+.+|.++...|++++|...|+++++..|. ...+|+.++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999998 789999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 004187 359 RFLRRTEGVEAARKYFLDARKSPNFT-----YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL 433 (770)
Q Consensus 359 ~~~~r~~~~e~A~~~f~~Al~~~~~~-----~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~ 433 (770)
..+...|++++|...|+++++..+.. ..++..+ ...++...........+.++.+...+..++ .
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~ 148 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---------RIAKKKRWNSIEERRIHQESELHSYLTRLI--A 148 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--H
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--H
Confidence 99999999999999999999754321 1222221 112223333344456777888877777665 6
Q ss_pred CChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 004187 434 NDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMY-GDLDSTLKVEQR 481 (770)
Q Consensus 434 g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~-Gd~~~~~k~~~R 481 (770)
|++++|...|+++++..| .+..+......+.... +..+.+..++.+
T Consensus 149 ~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 149 AERERELEECQRNHEGHE--DDGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp HHHHHHHTTTSGGGTTTS--CHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccc--chhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999877 4445555554444333 333344443333
No 108
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.20 E-value=3.7e-11 Score=125.17 Aligned_cols=195 Identities=14% Similarity=0.005 Sum_probs=164.5
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCc--------------------
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDY-------ATWNAKSGSIDAAIKVFQRALKALPDS-------------------- 315 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~-------a~~l~~~g~~e~A~~v~erAi~~~P~s-------------------- 315 (770)
....+...|.+++..+|..+++|..+ +..+...++..++.-.+.+++...|..
T Consensus 21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~ 100 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTS 100 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSS
T ss_pred CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCC
Confidence 34567789999999999999999999 788988888888999999999866542
Q ss_pred -HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 004187 316 -EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT--YHVYVAYA 392 (770)
Q Consensus 316 -~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~--~~~yi~~a 392 (770)
..+++.|+.++...|++++|.++|+.++...|. .. +++.++..+.+.+++++|+..|+++...++.. ..+++.++
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG 178 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHG 178 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHH
Confidence 457778999999999999999999999988876 44 88888889999999999999999888765332 34778888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHH
Q 004187 393 LMAFCQDKDPKLAHNVFEAGLKRF--MH-EPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFT 463 (770)
Q Consensus 393 ~le~~~~g~~~~A~~ife~alk~~--p~-~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~ 463 (770)
.++... |++++|...|++++... |. .++.++.++.++.++|+.++|+.+|++++...| + ..++..+.
T Consensus 179 ~al~~L-G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P--~-~~~~~aL~ 248 (282)
T 4f3v_A 179 VAAANL-ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP--E-PKVAAALK 248 (282)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC--C-HHHHHHHH
T ss_pred HHHHHC-CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--c-HHHHHHHh
Confidence 887775 99999999999998653 55 667899999999999999999999999999988 4 67765553
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.19 E-value=9.3e-11 Score=111.32 Aligned_cols=114 Identities=8% Similarity=0.023 Sum_probs=87.2
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 336 KKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 336 ~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
...|+++++.+|. ...+|+.++..+.+.|++++|+.+|++++...|.+..+|..+|.++... |++++|...|+++++.
T Consensus 22 ~~~l~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 22 GATLKDINAIPDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAADLYAVAFAL 99 (151)
T ss_dssp SCCTGGGCCSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred CCCHHHHhCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhh
Confidence 3456667777776 5677777777777777778888888777777777777777777776664 7888888888888888
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 416 FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 416 ~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
.|+++.+|+.++.++..+|++++|...|+++++..|
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888888888888888888888888888888887766
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.18 E-value=1.2e-09 Score=115.91 Aligned_cols=198 Identities=8% Similarity=-0.026 Sum_probs=171.4
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHH--
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWN----AKS---GSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIA-- 333 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l----~~~---g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e-- 333 (770)
..+..+..++.+|..+|.+..+|.....++ ... ++++++++.+++++..+|++..+|...+-+....+.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~ 163 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence 345678899999999999999999999999 666 78999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcC------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 004187 334 AAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG------VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHN 407 (770)
Q Consensus 334 ~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~------~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ 407 (770)
++.+.++++++.++. +..+|...+......+. ++++.+.+++++...+.+..+|.....++.......+.+..
T Consensus 164 ~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 164 KELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 999999999999998 78999999888877776 89999999999999999999999888877665333555666
Q ss_pred HHHHHHHhC---CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCchhHHHHHHHHH
Q 004187 408 VFEAGLKRF---MHEPAYILEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVWKRFT 463 (770)
Q Consensus 408 ife~alk~~---p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~-~~p~~~~~~lw~~~~ 463 (770)
.+++.++.. +.++.++...++.+.+.|+.++|..+|+++.. ..| .....|...+
T Consensus 243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp--ir~~yW~~~~ 300 (306)
T 3dra_A 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP--IRSNFWDYQI 300 (306)
T ss_dssp HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG--GGHHHHHHHH
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh--HHHHHHHHHH
Confidence 777777655 77888999999999999999999999999997 455 6678886543
No 111
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.17 E-value=9.3e-11 Score=126.57 Aligned_cols=148 Identities=15% Similarity=0.068 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHh
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---------------EMLRYAFAELEESR 329 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---------------~~lw~~~a~~~~~~ 329 (770)
++++..|++++...|.+..+|..++..+...|++++|+..|++++...|++ ..+|+.+|.++...
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556778888888889999999999999999999999999999999987 34555555555555
Q ss_pred CcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 004187 330 GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVF 409 (770)
Q Consensus 330 g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~if 409 (770)
|++++|...|+++++..|. ...+|..+|.++... |++++|+..|
T Consensus 210 g~~~~A~~~~~~al~~~p~-----------------------------------~~~a~~~lg~~~~~~-g~~~~A~~~~ 253 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSN-----------------------------------NEKGLSRRGEAHLAV-NDFELARADF 253 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTT-----------------------------------CHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-----------------------------------cHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 5555555555555555544 444444444444443 5555555555
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 004187 410 EAGLKRFMHEPAYILEYADFLSRLNDDRNI-RALFERALS 448 (770)
Q Consensus 410 e~alk~~p~~~~~~l~ya~~l~~~g~~~~A-r~lferaL~ 448 (770)
+++++..|+++.++..++.++..+|+++++ +.+|++++.
T Consensus 254 ~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 254 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555444 344555444
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.17 E-value=1.3e-10 Score=109.59 Aligned_cols=112 Identities=13% Similarity=-0.006 Sum_probs=102.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
.|++++...|.+..+|+.++..+...|++++|+..|++++...|++..+|+.+|.++...|++++|...|++++...|.
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~- 87 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX- 87 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-
Confidence 5888999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~ 382 (770)
...+|+.++..+...|++++|+..|+++++..+
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 678888888888888999999999988887544
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=1.4e-09 Score=109.05 Aligned_cols=174 Identities=14% Similarity=0.032 Sum_probs=147.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC----cHHHHHHHHHHHh
Q 004187 268 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG----AIAAAKKLYESLL 343 (770)
Q Consensus 268 ~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g----~~e~A~~iye~al 343 (770)
+..|+++... .++++++.++.++...+++++|+..|+++++. .+...++.++.++.. + ++++|...|++++
T Consensus 6 ~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 6 GSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp THHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4578888864 78999999999999999999999999999885 678899999999887 6 8999999999997
Q ss_pred ccCCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHH
Q 004187 344 TDSVNTTALAHIQFIRFLRR----TEGVEAARKYFLDARKSPNF--TYHVYVAYALMAFCQ---DKDPKLAHNVFEAGLK 414 (770)
Q Consensus 344 ~~~p~~~~~~w~~~~~~~~r----~~~~e~A~~~f~~Al~~~~~--~~~~yi~~a~le~~~---~g~~~~A~~ife~alk 414 (770)
+.. ...+++.++.++.. .+++++|..+|+++++..+. ...++..++.+.... .++.++|...|+++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 754 57899999998887 78999999999999998762 378888888886651 3799999999999999
Q ss_pred hCCCcHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCC
Q 004187 415 RFMHEPAYILEYADFLSRL-N-----DDRNIRALFERALSSL 450 (770)
Q Consensus 415 ~~p~~~~~~l~ya~~l~~~-g-----~~~~Ar~lferaL~~~ 450 (770)
. +.++..+..++.++..- | ++++|..+|+++++.-
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8 56666777788777653 3 8999999999999863
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.15 E-value=5e-11 Score=128.69 Aligned_cols=170 Identities=13% Similarity=0.039 Sum_probs=137.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004187 295 SGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF 374 (770)
Q Consensus 295 ~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f 374 (770)
.+++++|+..|++++...|.+...|..+|.++...|++++|...|++++...|... .. . .+.+..
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-~~-----------~-~~~~~~-- 190 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES-SF-----------S-NEEAQK-- 190 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC-CC-----------C-SHHHHH--
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc-cC-----------C-hHHHHH--
Confidence 34566778888888888888888888889988889999999999999988877621 10 0 011110
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchh
Q 004187 375 LDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE 454 (770)
Q Consensus 375 ~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~ 454 (770)
..+....+|.++|.++... |++++|...|+++++..|+++.+|+.++..+..+|++++|+..|+++++..| +
T Consensus 191 -----~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~ 262 (336)
T 1p5q_A 191 -----AQALRLASHLNLAMCHLKL-QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--N 262 (336)
T ss_dssp -----HHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--S
T ss_pred -----HHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--C
Confidence 0111256788888887775 9999999999999999999999999999999999999999999999999988 6
Q ss_pred HHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhcc
Q 004187 455 SIEVWKRFTQFEQMYGDLDST-LKVEQRRKEALS 487 (770)
Q Consensus 455 ~~~lw~~~~~fE~~~Gd~~~~-~k~~~R~~~~~~ 487 (770)
+..+|..+.......|+.+.+ .+.+++++..+.
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678888888888888998887 557888888876
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.14 E-value=7.9e-11 Score=111.17 Aligned_cols=118 Identities=8% Similarity=-0.036 Sum_probs=91.9
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC
Q 004187 303 KVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 303 ~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~ 382 (770)
..|++++...|++...|+.+|..+...|++++|...|++++...|. ...+|..++..+...|++++|+..|++++...+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4577777778888888888888888888888888888888888777 677888888888888888888888888887777
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHH
Q 004187 383 FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 422 (770)
Q Consensus 383 ~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~ 422 (770)
....+|..+|.++... |++++|.+.|+++++..|+++..
T Consensus 87 ~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQX-GELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCCcc
Confidence 6777777777776664 88888888888888877776544
No 116
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.13 E-value=1.1e-10 Score=108.95 Aligned_cols=112 Identities=15% Similarity=0.040 Sum_probs=96.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT 349 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~ 349 (770)
.|++++...|.+.+.|+.+|..+...|++++|+..|++++...|++..+|+.+|.++...|++++|...|++++...|.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 84 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN- 84 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-
Confidence 5777888888888999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC
Q 004187 350 TALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 350 ~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~ 382 (770)
...+|+.++..+...|++++|+..|+++++..+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 678888888888888888888888888887544
No 117
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.13 E-value=2.6e-08 Score=108.47 Aligned_cols=184 Identities=11% Similarity=0.042 Sum_probs=143.5
Q ss_pred hhhHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---cHHHHHHHHHHHHHh
Q 004187 263 SNKRIIFTYEQCLMYLYH-------YPDIWYDYATWNAKSGSIDAAIKVFQRALKALP---D---SEMLRYAFAELEESR 329 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~-------~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P---~---s~~lw~~~a~~~~~~ 329 (770)
....++..|++++...+. ...++..+|.++...|++++|.+.|++++...+ + ...++..+|.++...
T Consensus 156 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 456778899999986543 235788999999999999999999999998643 2 245678899999999
Q ss_pred CcHHHHHHHHHHHhc-----cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcC
Q 004187 330 GAIAAAKKLYESLLT-----DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP-----NFTYHVYVAYALMAFCQD 399 (770)
Q Consensus 330 g~~e~A~~iye~al~-----~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~-----~~~~~~yi~~a~le~~~~ 399 (770)
|++++|...|++++. ..+. ...++..++..+...|++++|..+|+++++.. +.....+..++.+ +...
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l-y~~~ 313 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV-YKET 313 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH-HSSS
T ss_pred CCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhCC
Confidence 999999999999998 6666 47889999999999999999999999999742 2222233333333 3334
Q ss_pred CC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 400 KD---PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 400 g~---~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
++ +++|...+++. ...++...++...+.++...|++++|...|++++..
T Consensus 314 ~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 314 VDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66 66777776651 223344567888999999999999999999999974
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.12 E-value=1.5e-09 Score=102.43 Aligned_cols=131 Identities=11% Similarity=-0.107 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
...|+..|..+...|++++|...|++++...|++..+|+.+|.++...|++++|...|+++++..|. ...+|+.++..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 4667888888888888888888888888888888888888888888888888888888888888776 566777777777
Q ss_pred HHhcCHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCCHHHHHHHHHHHHH
Q 004187 362 RRTEGVEAARKYFLDARKSPNFTYHVYVA--YALMAFCQDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al~~~~~~~~~yi~--~a~le~~~~g~~~~A~~ife~alk 414 (770)
...|++++|+.+|+++++..+....++.. .+...... |++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-KAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHHHHcccchHH
Confidence 77777777777777776655555555433 22223332 566666666655543
No 119
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=1.7e-08 Score=109.28 Aligned_cols=224 Identities=11% Similarity=-0.026 Sum_probs=171.8
Q ss_pred hhhHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYP------DIWYDYATWNAKSGSIDAAIKVFQRALKAL--------PDSEMLRYAFAELEES 328 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~------~~w~~~a~~l~~~g~~e~A~~v~erAi~~~--------P~s~~lw~~~a~~~~~ 328 (770)
.++.+...|++++...+... .++..++.++...|++++|+..|++++... |.....+..++.++..
T Consensus 68 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 68 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH
Confidence 35667788999998765432 236788999999999999999999999864 3345667788999999
Q ss_pred hCcHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC--CCCCHHHHHH-----HHHHHHh
Q 004187 329 RGAIAAAKKLYESLLTDSVNT----TALAHIQFIRFLRRTEGVEAARKYFLDARKS--PNFTYHVYVA-----YALMAFC 397 (770)
Q Consensus 329 ~g~~e~A~~iye~al~~~p~~----~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~--~~~~~~~yi~-----~a~le~~ 397 (770)
.|++++|...|++++...+.. ...++..++..+...|++++|+..+++++.. .......+.. .+.+...
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 999999999999999876531 3467888899999999999999999999853 1111112221 2222334
Q ss_pred cCCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHHc
Q 004187 398 QDKDPKLAHNVFEAGLKRFMHE----PAYILEYADFLSRLNDDRNIRALFERALSSLPP----EESIEVWKRFTQFEQMY 469 (770)
Q Consensus 398 ~~g~~~~A~~ife~alk~~p~~----~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~----~~~~~lw~~~~~fE~~~ 469 (770)
.|+.++|...+++++...+.. ...+..++..+...|++++|..++++++...+. .....++...+......
T Consensus 228 -~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 228 -TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp -TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 499999999999998876542 335678889999999999999999999875331 12234666677777788
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 004187 470 GDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 470 Gd~~~~~k~~~R~~~~~~ 487 (770)
|+.+.+...++++.+..+
T Consensus 307 g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 307 GRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999998776
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.11 E-value=1.4e-10 Score=108.18 Aligned_cols=119 Identities=13% Similarity=-0.056 Sum_probs=87.4
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC
Q 004187 303 KVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 303 ~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~ 382 (770)
..|++++...|++...++.+|..+...|++++|...|++++...|. ...+|..++..+.+.|++++|+..|++++...+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4667777777777777777788777888888888888888877776 677777777777777778888888877777776
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHH
Q 004187 383 FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI 423 (770)
Q Consensus 383 ~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~ 423 (770)
....+|..++.++... |++++|.+.|+++++..|+++..+
T Consensus 84 ~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQL-GDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp TCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred CCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCcchH
Confidence 6677777777776664 777777777777777777665443
No 121
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=6.1e-09 Score=112.86 Aligned_cols=224 Identities=8% Similarity=-0.052 Sum_probs=172.4
Q ss_pred hhhHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCc
Q 004187 263 SNKRIIFTYEQCLMYLYHYPD-----IWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRGA 331 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~-----~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s------~~lw~~~a~~~~~~g~ 331 (770)
..+.+...+++++...|.... ++..++.++...|++++|+..|++++...|.. ...+..++.++...|+
T Consensus 29 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 345677899999988776532 57788889999999999999999999876533 2335678889999999
Q ss_pred HHHHHHHHHHHhccCC-------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcC
Q 004187 332 IAAAKKLYESLLTDSV-------NTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF-----TYHVYVAYALMAFCQD 399 (770)
Q Consensus 332 ~e~A~~iye~al~~~p-------~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~-----~~~~yi~~a~le~~~~ 399 (770)
+++|...|++++...+ .....++..++..+...|++++|+..|++++...+. ...++..++.+....
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~- 187 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR- 187 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc-
Confidence 9999999999997542 113456777888899999999999999999875332 345677788887775
Q ss_pred CCHHHHHHHHHHHHHhCC--CcHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHHcC
Q 004187 400 KDPKLAHNVFEAGLKRFM--HEPAYIL-----EYADFLSRLNDDRNIRALFERALSSLPPE--ESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 400 g~~~~A~~ife~alk~~p--~~~~~~l-----~ya~~l~~~g~~~~Ar~lferaL~~~p~~--~~~~lw~~~~~fE~~~G 470 (770)
|++++|...+++++...+ +.+..|. ..+.++...|++++|..++++++...+.. .....+..++......|
T Consensus 188 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 267 (373)
T 1hz4_A 188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 267 (373)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcC
Confidence 999999999999998632 2222232 23455778999999999999999865421 12335666777778889
Q ss_pred CHHHHHHHHHHHHHhcc
Q 004187 471 DLDSTLKVEQRRKEALS 487 (770)
Q Consensus 471 d~~~~~k~~~R~~~~~~ 487 (770)
+.+.+...++++.+..+
T Consensus 268 ~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 268 EFEPAEIVLEELNENAR 284 (373)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887766
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=1.6e-09 Score=125.09 Aligned_cols=175 Identities=8% Similarity=-0.058 Sum_probs=158.6
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC--
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS----------IDAAIKVFQRALKALPDSEMLRYAFAELEESRG-- 330 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~----------~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g-- 330 (770)
..++++..+++++..+|.+..+|...+.++...++ ++++++.+++++..+|++..+|...+-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34678899999999999999999999999999988 999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------
Q 004187 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE-GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQ----------- 398 (770)
Q Consensus 331 ~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~-~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~----------- 398 (770)
+++++.+.++++++.+|. +..+|...+....+.+ .++++.+.++++++..+.+..+|...+.+....
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 779999999999999998 7899999998888888 899999999999999999999999988886653
Q ss_pred --CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhH
Q 004187 399 --DKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRN 438 (770)
Q Consensus 399 --~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~ 438 (770)
.+.++++.+.+++++...|++..+|..+..++...+.+++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 1457899999999999999999999888888877776554
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.10 E-value=4.7e-10 Score=108.18 Aligned_cols=122 Identities=9% Similarity=0.039 Sum_probs=98.6
Q ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHhCcH--HHHHHH
Q 004187 262 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAEL-EESRGAI--AAAKKL 338 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~-~~~~g~~--e~A~~i 338 (770)
+.++.++..|++++..+|.++.+|+.+|.++...|++++|+..|++++...|++..+|+.+|.+ +...|++ ++|...
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 4556667788888888888888888888888888888888888888888888888888888888 6777887 888888
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC
Q 004187 339 YESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT 384 (770)
Q Consensus 339 ye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~ 384 (770)
|+++++..|. ...+|..++..+...|++++|...|+++++..+..
T Consensus 104 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 104 IDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 8888888887 67788888888888888888888888888766543
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.08 E-value=9.7e-10 Score=105.96 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=115.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHH-HHHhcCH--HH
Q 004187 293 AKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF-LRRTEGV--EA 369 (770)
Q Consensus 293 ~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~-~~r~~~~--e~ 369 (770)
...|++++|+..|++++...|++..+|+.+|.++...|++++|...|+++++..|. ...+|..++.. +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 34678899999999999999999999999999999999999999999999999998 78999999998 7788998 99
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHH
Q 004187 370 ARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYI 423 (770)
Q Consensus 370 A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~ 423 (770)
|+.+|+++++..+....+|..+|.+.... |++++|...|+++++..|+++...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQ-ANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999998888899999999998775 999999999999999999876443
No 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.08 E-value=1.5e-09 Score=98.46 Aligned_cols=100 Identities=12% Similarity=-0.055 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 360 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~ 360 (770)
..+.|...|..+...|++++|+..|++++...|++..+|+.+|.++...|++++|...|+++++..|. ...+|+.++..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888888888888888888887 67778888877
Q ss_pred HHHhcCHHHHHHHHHHHHcCC
Q 004187 361 LRRTEGVEAARKYFLDARKSP 381 (770)
Q Consensus 361 ~~r~~~~e~A~~~f~~Al~~~ 381 (770)
+...|++++|+..|+++++..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 777777777777777777655
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.06 E-value=3.7e-09 Score=99.68 Aligned_cols=130 Identities=15% Similarity=-0.090 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004187 317 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAF 396 (770)
Q Consensus 317 ~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~ 396 (770)
..|+.+|..+...|++++|...|++++...|. ...+|..++..+...|++++|+..|+++++..+....+|..+|.+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45566666666677777777777777766665 56666666666666666666666666666665555666666666655
Q ss_pred hcCCCHHHHHHHHHHHHHhCCCcHHHHHH--HHHHHHhcCChhHHHHHHHHHHh
Q 004187 397 CQDKDPKLAHNVFEAGLKRFMHEPAYILE--YADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 397 ~~~g~~~~A~~ife~alk~~p~~~~~~l~--ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
.. |++++|..+|+++++..|++..++.. .+..+...|++++|..+++++..
T Consensus 93 ~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 AL-GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 53 66666666666666666666655533 33335555666666666655443
No 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=2.9e-09 Score=113.03 Aligned_cols=165 Identities=10% Similarity=-0.010 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-----CcHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRGAIAAAKKLYESLLTDSVN-----TTAL 352 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s------~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~-----~~~~ 352 (770)
.+...+.++...|++++|...|++++...+.. ...+..++.++...|++++|...|++++..... ....
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444677888999999999999999876532 456778899999999999999999999876432 1246
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc------H
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNF------TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------P 420 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~------~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~------~ 420 (770)
++..++..+.. |++++|+..|++|++..+. ...++.+++.+.... |++++|...|+++++..+++ .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 77888888888 9999999999999864221 246788888887775 99999999999999976542 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 421 AYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 421 ~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
..++..+.++..+|++++|...|++++ ..|
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 467777788888899999999999999 766
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.05 E-value=2.3e-09 Score=96.25 Aligned_cols=117 Identities=13% Similarity=0.005 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 279 p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
|.....|+..+..+...|++++|...|++++...|++..+|+.++.++...|++++|...|++++...|. ...+|+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 87 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHH
Confidence 4455677778888888888888888888888888888778888888887788888888888877777665 455666666
Q ss_pred HHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004187 359 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAF 396 (770)
Q Consensus 359 ~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~ 396 (770)
..+...|++++|+.+|+++++..+....++..++.+..
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 66555555555555555555554444555555444433
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.05 E-value=3.1e-09 Score=105.19 Aligned_cols=126 Identities=10% Similarity=0.054 Sum_probs=64.1
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 004187 322 FAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKD 401 (770)
Q Consensus 322 ~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~ 401 (770)
.|..+...|++++|...|++++. + ...+|..++..+.+.|++++|+..|+++++..+....+|..+|.+.... |+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~--~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQD--P--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT-EK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSS--C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHhCCHHHHHHHHHHHcC--C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-cc
Confidence 34444444444444444444431 1 2334444444444444444444444444444333444444444444332 44
Q ss_pred HHHHHHHHHHHHHhCCCc----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004187 402 PKLAHNVFEAGLKRFMHE----------------PAYILEYADFLSRLNDDRNIRALFERALSSLPP 452 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~----------------~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~ 452 (770)
+++|...|+++++..|++ +.+|...+..+..+|++++|...|+++++..|.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 555555555555444333 366777777777777777777777777776663
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.05 E-value=1.6e-09 Score=97.98 Aligned_cols=116 Identities=13% Similarity=-0.029 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 279 p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
|.+...|+.+|..+...|++++|+..|++++...|++..+|+.+|.++...|++++|...|+++++..|. ...+|..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 4556777777877878888888888888888877777777777777777777777777777777777666 556666666
Q ss_pred HHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004187 359 RFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMA 395 (770)
Q Consensus 359 ~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le 395 (770)
..+.+.|++++|+..|+++++..+....++..++.++
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 6666666666666666666655544445555554443
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.04 E-value=1.1e-08 Score=109.94 Aligned_cols=185 Identities=9% Similarity=0.042 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-cHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG-AIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g-~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
++|-.+..++......++|++.+++++..+|++..+|...+.++...+ .++++...++++|..+|. +..+|.......
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344444444445556678999999999999999999999999999998 599999999999999998 899999999888
Q ss_pred HHh-c-CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 362 RRT-E-GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPK--------LAHNVFEAGLKRFMHEPAYILEYADFLS 431 (770)
Q Consensus 362 ~r~-~-~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~--------~A~~ife~alk~~p~~~~~~l~ya~~l~ 431 (770)
.+. + ++++++.+++++++..+.++++|.....+.... +..+ ++.+.++++++.+|.+...|.....++.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 877 7 889999999999999999999999988776554 5555 8999999999999999999999998888
Q ss_pred hcCC-------hhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCC
Q 004187 432 RLND-------DRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGD 471 (770)
Q Consensus 432 ~~g~-------~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd 471 (770)
..+. ++++...+++++...| .+...|.....+-...|.
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P--~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIP--HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCC
Confidence 8876 6889999999999999 667788765555545544
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.02 E-value=1.9e-09 Score=102.84 Aligned_cols=112 Identities=11% Similarity=-0.038 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHH
Q 004187 280 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIR 359 (770)
Q Consensus 280 ~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~ 359 (770)
...+.|+..+..+...|++++|+..|++++...|++..+|+.++.++...|++++|...|+++++..|. ...+|+.++.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 356788888999999999999999999999999999999999999999999999999999999988887 6788888888
Q ss_pred HHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004187 360 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 392 (770)
Q Consensus 360 ~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a 392 (770)
.+...|++++|+..|+++++..+.....|+..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 888888888888888888876555555444443
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.02 E-value=3.3e-09 Score=95.16 Aligned_cols=122 Identities=10% Similarity=-0.063 Sum_probs=96.0
Q ss_pred CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004187 313 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 392 (770)
Q Consensus 313 P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a 392 (770)
|.+...|+.+|..+...|++++|...|++++...|. ...+|..++..+...+++++|+.+|+++++..+....+|..+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 445667777888888888888888888888888776 5778888888888888888888888888877666677788887
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCh
Q 004187 393 LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD 436 (770)
Q Consensus 393 ~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~ 436 (770)
.+.... |++++|...|+++++..|+++.++..++.++...|++
T Consensus 88 ~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSL-NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHh-CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 776664 8888888888888888888888887777777777654
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.02 E-value=3.4e-09 Score=95.76 Aligned_cols=119 Identities=14% Similarity=0.012 Sum_probs=65.1
Q ss_pred CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004187 313 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 392 (770)
Q Consensus 313 P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a 392 (770)
|.+...|+.+|..+...|++++|...|++++...|. ...+|..++..+...+++++|+.+|+++++..+....+|..+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 344455555555555556666666666666555554 4555555555555555555555555555555444455555555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 004187 393 LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL 433 (770)
Q Consensus 393 ~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~ 433 (770)
.+.... |++++|.+.|+++++..|++..++..++.++..+
T Consensus 92 ~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAM-KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHH-hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 554443 5555555555555555555555555555544443
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.02 E-value=9.5e-09 Score=101.66 Aligned_cols=131 Identities=14% Similarity=0.055 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 363 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r 363 (770)
.++..|..+...|++++|+..|++++ +.+..+|+.+|.++...|++++|...|++++...|. ...+|+.++..+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 46777888888888888888888885 336778888888888888888888888888888877 67888888888888
Q ss_pred hcCHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc
Q 004187 364 TEGVEAARKYFLDARKSPNFTY----------------HVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 419 (770)
Q Consensus 364 ~~~~e~A~~~f~~Al~~~~~~~----------------~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~ 419 (770)
.|++++|+..|+++++..+... .+|..+|.+.... |++++|...|+++++..|++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-EEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCccc
Confidence 8888888888888888665433 7788888877775 88888888888888888775
No 136
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.02 E-value=1.1e-08 Score=89.97 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
...|+..+..+...|++++|...|++++...|.+..+|+.+|.++...|++++|...|++++...|. ...+|..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 4678888889999999999999999999999999999999999998999999999999999988887 677888888888
Q ss_pred HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004187 362 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 394 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~l 394 (770)
...|++++|+..|+++++..+....++..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888888888888888777767777666554
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.01 E-value=5e-09 Score=94.89 Aligned_cols=113 Identities=12% Similarity=-0.039 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004187 315 SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 394 (770)
Q Consensus 315 s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~l 394 (770)
+...|+..|..+...|++++|...|+++++..|. ...+|..++..+...|++++|+..|+++++..+....+|..+|.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3445566666666666666666666666666665 456666666666666666666666666666555556666666665
Q ss_pred HHhcCCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHH
Q 004187 395 AFCQDKDPKLAHNVFEAGLKRF------MHEPAYILEYADF 429 (770)
Q Consensus 395 e~~~~g~~~~A~~ife~alk~~------p~~~~~~l~ya~~ 429 (770)
.... |++++|...|+++++.. |+++.++.....+
T Consensus 82 ~~~~-~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 82 QIAV-KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHH-hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 5553 66666666666666665 5555555444443
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.01 E-value=1.7e-08 Score=106.03 Aligned_cols=171 Identities=9% Similarity=-0.019 Sum_probs=135.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEM------LRYAFAELEESRGAIAAAKKLYESLLTDSVNT-- 349 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~------lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~-- 349 (770)
.+.....+...+..+...|++++|.+.|+++++..+.... .++.++.++...|++++|...|++++......
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 3445567778888899999999999999999998776542 34556777888899999999999999754321
Q ss_pred ---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-
Q 004187 350 ---TALAHIQFIRFLRRTEGVEAARKYFLDARK---SPNFT----YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH- 418 (770)
Q Consensus 350 ---~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~---~~~~~----~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~- 418 (770)
...+|..++..+...|++++|...|++|++ ..+.. ..+|.++|.+.... |++++|...|+++++..++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHhc
Confidence 256888899999999999999999999983 22222 25788888887775 9999999999999986422
Q ss_pred -----cHHHHHHHHHHHHhcCChhHH-HHHHHHHHhC
Q 004187 419 -----EPAYILEYADFLSRLNDDRNI-RALFERALSS 449 (770)
Q Consensus 419 -----~~~~~l~ya~~l~~~g~~~~A-r~lferaL~~ 449 (770)
...++...+.++..+|++++| ...|++|+..
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 267888899999999999999 8889998864
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.00 E-value=1.2e-08 Score=90.53 Aligned_cols=112 Identities=20% Similarity=0.245 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
..+|+.++..+...|++++|++.|++++...|++..+|+.++.++...|++++|..+|++++...|. ...+|..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 5677888888888888888888888888888888888888888888888888888888888777665 456666666666
Q ss_pred HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004187 362 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 394 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~l 394 (770)
...+++++|..+|+++++..+....++..++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 666666666666666666555555555555544
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.00 E-value=3.5e-09 Score=96.07 Aligned_cols=100 Identities=10% Similarity=-0.068 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~ 362 (770)
..|+..|..+...|++++|+..|+++++..|++..+|+.+|.++...|++++|...|+++++..|. ...+|+.++..+.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 347888999999999999999999999999999999999999999999999999999999999998 7889999999999
Q ss_pred HhcCHHHHHHHHHHHHcCCCC
Q 004187 363 RTEGVEAARKYFLDARKSPNF 383 (770)
Q Consensus 363 r~~~~e~A~~~f~~Al~~~~~ 383 (770)
..|++++|+..|+++++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999999987654
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.99 E-value=9.7e-09 Score=106.89 Aligned_cols=192 Identities=8% Similarity=-0.150 Sum_probs=160.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHhCcHHHHHHHHHHHhccCCCC-----------------
Q 004187 294 KSGSIDAAIKVFQRALKALPDSEMLRYAF-------AELEESRGAIAAAKKLYESLLTDSVNT----------------- 349 (770)
Q Consensus 294 ~~g~~e~A~~v~erAi~~~P~s~~lw~~~-------a~~~~~~g~~e~A~~iye~al~~~p~~----------------- 349 (770)
..++...|++.|.+++..+|+.++.|+.+ +..+...+...++...+.+.+...|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 46889999999999999999999999999 788888887888888899998865531
Q ss_pred ---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-c-HHHHH
Q 004187 350 ---TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH-E-PAYIL 424 (770)
Q Consensus 350 ---~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~-~-~~~~l 424 (770)
...+++.|+..+...|++++|+++|..++...+... +....+.+.+.. ++++.|+..|+.+++.... . ..+++
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~d~~~~~~a~~ 175 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA-ERWTDVIDQVKSAGKWPDKFLAGAAGV 175 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT-TCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc-CCHHHHHHHHHHhhccCCcccHHHHHH
Confidence 257888999999999999999999999988776555 777778777775 9999999999977654311 1 35788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 425 EYADFLSRLNDDRNIRALFERALSSLP-PEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 425 ~ya~~l~~~g~~~~Ar~lferaL~~~p-~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
..+..+..+|++++|...|++++...- +....+.+..........|+.+.+..+++++....|
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 889999999999999999999996431 233667788888888899999999999999999999
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.99 E-value=6.1e-10 Score=109.80 Aligned_cols=124 Identities=10% Similarity=-0.033 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 004187 315 SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT---------------ALAHIQFIRFLRRTEGVEAARKYFLDARK 379 (770)
Q Consensus 315 s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~---------------~~~w~~~~~~~~r~~~~e~A~~~f~~Al~ 379 (770)
....|...|..+...|++++|...|++++...|... ..+|..++..+...+++++|+..|+++++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433311 25566666666666666666666666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHH
Q 004187 380 SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNI 439 (770)
Q Consensus 380 ~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~A 439 (770)
..+....+|..+|.++... |++++|...|+++++..|+++.++..++.++..+++.+++
T Consensus 117 ~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred hCcccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 6555666666666665554 7777777777777777777777766666666665554433
No 143
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.98 E-value=1.3e-09 Score=119.90 Aligned_cols=187 Identities=10% Similarity=0.028 Sum_probs=142.0
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
.++.+...|.++ ..|..+|..+...|++++|.+.|+++ .+...|..........|+++.|..+...+
T Consensus 137 ~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L 203 (449)
T 1b89_A 137 MYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHI 203 (449)
T ss_dssp CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT
T ss_pred CHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 445566677766 57999999999999999999999999 58899999999999999999997777653
Q ss_pred hccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhCC----
Q 004187 343 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFC-QDKDPKLAHNVFEAGLKRFM---- 417 (770)
Q Consensus 343 l~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~-~~g~~~~A~~ife~alk~~p---- 417 (770)
+ ..|+ -...++.++.+.|.+++|+.+|++++..++....+|..++.++.+ ..++..+..+.|...+...+
T Consensus 204 ~-~~ad----~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 204 V-VHAD----ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp T-TCHH----HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred H-hCHh----hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3 4433 233577889999999999999999999998888888888777543 23566677777776666666
Q ss_pred -CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CC---------chhHHHHHHHHHHHHH
Q 004187 418 -HEPAYILEYADFLSRLNDDRNIRALFERALSS-LP---------PEESIEVWKRFTQFEQ 467 (770)
Q Consensus 418 -~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~-~p---------~~~~~~lw~~~~~fE~ 467 (770)
.++.+|..++-++.+.+++++|....-..... .. .-.+.+++++.+.|..
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 67789999999999999999987644332211 00 0123567777777765
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.96 E-value=1.8e-08 Score=89.39 Aligned_cols=116 Identities=13% Similarity=0.073 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004187 316 EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMA 395 (770)
Q Consensus 316 ~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le 395 (770)
...|+.++.++...|++++|.+.|++++...|. ...+|..++..+.+.|++++|..+|+++++..+....++..++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 567777888888888888888888888887776 5677788888888888888888888888776666677777777776
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 004187 396 FCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL 433 (770)
Q Consensus 396 ~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~ 433 (770)
... |++++|...|+++++..|+++.++..++..+...
T Consensus 88 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQ-GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHh-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 664 7888888888888888888777777766665543
No 145
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.96 E-value=1.4e-07 Score=100.73 Aligned_cols=195 Identities=9% Similarity=-0.063 Sum_probs=160.3
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCc-HHHHHHHHH
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGS--IDAAIKVFQRALKALPDSEMLRYAFAELEESRGA-IAAAKKLYE 340 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~--~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~-~e~A~~iye 340 (770)
.+..+.+++.++..+|.++.+|..-..++...++ +++++.++++++..+|.|..+|...+-+....|. ++++.+.++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3455678999999999999999999999999884 8999999999999999999999999888888888 699999999
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 004187 341 SLLTDSVNTTALAHIQFIRFLRRT--------------EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK------ 400 (770)
Q Consensus 341 ~al~~~p~~~~~~w~~~~~~~~r~--------------~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g------ 400 (770)
+++..+|. +..+|...+...... +.++++.+.+.+++...|.+..+|.....+.....|
T Consensus 170 ~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~ 248 (331)
T 3dss_A 170 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSV 248 (331)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCH
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccch
Confidence 99999998 789999888877766 558899999999999989899999754444343323
Q ss_pred ----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---hcCChhHHHHHHHHHHhCCCchhHHHHHHH
Q 004187 401 ----DPKLAHNVFEAGLKRFMHEPAYILEYADFLS---RLNDDRNIRALFERALSSLPPEESIEVWKR 461 (770)
Q Consensus 401 ----~~~~A~~ife~alk~~p~~~~~~l~ya~~l~---~~g~~~~Ar~lferaL~~~p~~~~~~lw~~ 461 (770)
-++++++.++.+++..|++.=.++..+.+.. ..+..++++..+++.++..| ....-|..
T Consensus 249 ~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp--~r~~~y~d 314 (331)
T 3dss_A 249 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP--MRAAYLDD 314 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG--GGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc--chhhHHHH
Confidence 4789999999999999998544445544433 34677899999999999887 44444433
No 146
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=1.7e-08 Score=106.46 Aligned_cols=182 Identities=12% Similarity=0.108 Sum_probs=143.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 004187 269 FTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP--DSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 346 (770)
Q Consensus 269 ~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P--~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~ 346 (770)
..+++.+...+.....++.+|.++...|++++|++++++++...| ++.+++...+.++.+.|+.+.|+++++++.+..
T Consensus 87 ~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~ 166 (310)
T 3mv2_B 87 EELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI 166 (310)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 467777766566777889999999999999999999999999987 889999999999999999999999999998888
Q ss_pred CC---CcHHHHHHHH----HHHHHhcCHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--
Q 004187 347 VN---TTALAHIQFI----RFLRRTEGVEAARKYFLDARKSPNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR-- 415 (770)
Q Consensus 347 p~---~~~~~w~~~~----~~~~r~~~~e~A~~~f~~Al~~~~~--~~~~yi~~a~le~~~~g~~~~A~~ife~alk~-- 415 (770)
++ ....+.++++ .+....+++++|..+|+++.+..+. ...++++ +... .|++++|.++++.+++.
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~-~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ-QRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH-HTCHHHHHHHHHHHHSHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH-cCCHHHHHHHHHHHHHhcc
Confidence 71 0022333333 3333334899999999999887764 2334444 3334 49999999999987776
Q ss_pred --------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHH
Q 004187 416 --------FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEV 458 (770)
Q Consensus 416 --------~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~l 458 (770)
.|+++.++.+.+.+...+|+ +|..+++++.+..| ++.-+
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P--~hp~i 289 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH--EHAFI 289 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC--CCHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC--CChHH
Confidence 38899999999888888887 78999999999988 54443
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.95 E-value=8.8e-09 Score=94.17 Aligned_cols=104 Identities=12% Similarity=-0.089 Sum_probs=93.1
Q ss_pred HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHH
Q 004187 277 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 356 (770)
Q Consensus 277 ~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~ 356 (770)
..+.++..|+.++..+...|++++|+..|++++...|++..+|+.+|.++...|++++|...|++++...|. ...+|+.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999999887 7889999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHcCC
Q 004187 357 FIRFLRRTEGVEAARKYFLDARKSP 381 (770)
Q Consensus 357 ~~~~~~r~~~~e~A~~~f~~Al~~~ 381 (770)
++..+...|++++|+..|+++++..
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 9999998999999999999988653
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1.4e-08 Score=93.73 Aligned_cols=116 Identities=10% Similarity=-0.065 Sum_probs=91.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHH
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAH 354 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w 354 (770)
.+.+...|+..+..+...|++++|+..|++++...|++ ..+|+.++.++...|++++|...|+++++..|. ...+|
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 46677888889999999999999999999999888887 778888888888888888888888888888776 56777
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004187 355 IQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 394 (770)
Q Consensus 355 ~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~l 394 (770)
+.++..+...+++++|+.+|+++++..+....++..++.+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7777777777777777777777776666556666555554
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=1.5e-09 Score=113.75 Aligned_cols=176 Identities=7% Similarity=-0.043 Sum_probs=135.8
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
.++.++..|++++..+|.++.+|+.+|.++...|++++|+..|+++++..|++..+|+.+|.++...|++++|...|+++
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 343 LTDSVNT----TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 343 l~~~p~~----~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
++..|.. ...+|..+.. ..+...........+....+...++.+. .|++++|.+.|+++++..|+
T Consensus 99 l~l~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~l~~l~---~~~~~~A~~~~~~al~~~p~ 167 (281)
T 2c2l_A 99 YSLAKEQRLNFGDDIPSALRI--------AKKKRWNSIEERRIHQESELHSYLTRLI---AAERERELEECQRNHEGHED 167 (281)
T ss_dssp HHHHHHTTCCCCSHHHHHHHH--------HHHHHHHHHHHTCCCCCCHHHHHHHHHH---HHHHHHHHTTTSGGGTTTSC
T ss_pred HHhCccchhhHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHhhhccccc
Confidence 9987742 1234443321 1112222222222222233333333332 38999999999999999999
Q ss_pred cHHHHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 004187 419 EPAYILEYADFLSRL-NDDRNIRALFERALSS 449 (770)
Q Consensus 419 ~~~~~l~ya~~l~~~-g~~~~Ar~lferaL~~ 449 (770)
+..+.......+... +.++++..+|+++.+.
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 168 DGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 887777777666665 6788899999988764
No 150
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=5.1e-08 Score=97.47 Aligned_cols=178 Identities=12% Similarity=-0.024 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhc----CHHHHHHHH
Q 004187 299 DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTE----GVEAARKYF 374 (770)
Q Consensus 299 e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~----~~e~A~~~f 374 (770)
.+|.+.|+++.+. .+...++.++.++...+++++|...|+++++.. ...+++.++.++.. + ++++|..+|
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3578889999986 788999999999999999999999999999864 47899999988887 6 899999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHh----cCChhHHHHHHHH
Q 004187 375 LDARKSPNFTYHVYVAYALMAFC---QDKDPKLAHNVFEAGLKRFMH--EPAYILEYADFLSR----LNDDRNIRALFER 445 (770)
Q Consensus 375 ~~Al~~~~~~~~~yi~~a~le~~---~~g~~~~A~~ife~alk~~p~--~~~~~l~ya~~l~~----~g~~~~Ar~lfer 445 (770)
+++.+.. ...++..++.+... ..+++++|...|+++++..+. .+..+..++.++.. .+++++|..+|++
T Consensus 77 ~~A~~~g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 77 EKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHHTT--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHHCC--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998864 47888888888654 148999999999999998773 48889999999988 7899999999999
Q ss_pred HHhCCCchhHHHHHHHHHHHHH-HcC-----CHHHHHHHHHHHHHhcc
Q 004187 446 ALSSLPPEESIEVWKRFTQFEQ-MYG-----DLDSTLKVEQRRKEALS 487 (770)
Q Consensus 446 aL~~~p~~~~~~lw~~~~~fE~-~~G-----d~~~~~k~~~R~~~~~~ 487 (770)
++.. + .+...+..+..+.. ..| |.+.+...++++.+.-.
T Consensus 155 A~~~-~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL-S--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT-S--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc-C--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9987 3 11223444444433 334 89999999999887643
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=2.2e-08 Score=105.22 Aligned_cols=162 Identities=10% Similarity=0.011 Sum_probs=119.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-----HH-HHHHHHHHhCcHHHHHHHHHHHhccCCCC--c---HHHHH
Q 004187 287 DYATWNAKSGSIDAAIKVFQRALKALPDSEML-----RY-AFAELEESRGAIAAAKKLYESLLTDSVNT--T---ALAHI 355 (770)
Q Consensus 287 ~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~l-----w~-~~a~~~~~~g~~e~A~~iye~al~~~p~~--~---~~~w~ 355 (770)
..+..+...|++++|...|++++...+.+... |+ .++.++...+++++|...|++++...... . ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667778899999999999999877765442 22 36777777789999999999998753321 1 34678
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC------cHHH
Q 004187 356 QFIRFLRRTEGVEAARKYFLDARK-------SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH------EPAY 422 (770)
Q Consensus 356 ~~~~~~~r~~~~e~A~~~f~~Al~-------~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~------~~~~ 422 (770)
.++.++...|+++.|..+|+++++ ..+....+|.++|.+.... |++++|.+.|+++++..+. .+.+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 888888888899999999988883 1122345677778776665 8888888888888876422 2567
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHhC
Q 004187 423 ILEYADFLSRLND-DRNIRALFERALSS 449 (770)
Q Consensus 423 ~l~ya~~l~~~g~-~~~Ar~lferaL~~ 449 (770)
+...+.++..+|+ +++|...|++|+..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 7888888888884 58888888888763
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.91 E-value=1e-08 Score=97.59 Aligned_cols=100 Identities=7% Similarity=-0.154 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004187 351 ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFL 430 (770)
Q Consensus 351 ~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l 430 (770)
..+|+.++..+.+.|++++|+.+|+++++..+....+|..++.+++.. |++++|...|+++++..|+++.+|..++.++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS-GQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456666666666677777777777777766666667777777766664 7777777777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 004187 431 SRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 431 ~~~g~~~~Ar~lferaL~~~p 451 (770)
..+|++++|...|+++++..|
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHS
T ss_pred HHccCHHHHHHHHHHHHHhCC
Confidence 777777777777777777666
No 153
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.91 E-value=5.1e-09 Score=115.20 Aligned_cols=318 Identities=10% Similarity=0.055 Sum_probs=138.2
Q ss_pred CChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhccCcchHHHHH
Q 004187 36 LPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETR 115 (770)
Q Consensus 36 ~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~~y~~~~~~~~~~~~~~~~e~ar 115 (770)
+++++|...++++ +...+|..+++.+.+.|++++|...|.|| ++...|..-+.-....+ ..+.+.
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g------~~EeAi 81 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSG------NWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCC------CHHHHH
Confidence 3588888888888 23358999999999999999999999875 34444444444443333 256677
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhhHhHHH
Q 004187 116 KAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAK 195 (770)
Q Consensus 116 ~~~e~aL~~ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y~~fe~~~~~~la~ 195 (770)
+.++.+++..+ + ..+...++.. |...+++.++..+|+ .|... .|.. + +.
T Consensus 82 ~yl~~ark~~~-~---~~i~~~Li~~---------Y~Klg~l~e~e~f~~----~pn~~---a~~~-------I----Gd 130 (449)
T 1b89_A 82 KYLQMARKKAR-E---SYVETELIFA---------LAKTNRLAELEEFIN----GPNNA---HIQQ-------V----GD 130 (449)
T ss_dssp ----------------------------------------CHHHHTTTTT----CC------------------------
T ss_pred HHHHHHHHhCc-c---chhHHHHHHH---------HHHhCCHHHHHHHHc----CCcHH---HHHH-------H----HH
Confidence 77776665421 1 2233333332 223455555554443 24221 1110 0 00
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHH
Q 004187 196 GLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCL 275 (770)
Q Consensus 196 ~ll~e~~~~y~~A~~v~k~~~~~~~~L~~~~~~v~p~~~~~~~~~~~lw~~yi~~ek~n~~~ld~~~~~~r~~~~ye~aL 275 (770)
.+. ..+.|+.|+..|... ..|.++..-.-. .+.+..++.+|+++
T Consensus 131 ~~~--~~g~yeeA~~~Y~~a--------------------------~n~~~LA~~L~~-------Lg~yq~AVea~~KA- 174 (449)
T 1b89_A 131 RCY--DEKMYDAAKLLYNNV--------------------------SNFGRLASTLVH-------LGEYQAAVDGARKA- 174 (449)
T ss_dssp --------CTTTHHHHHHHT--------------------------TCHHHHHHHHHT-------TTCHHHHHHHHHHH-
T ss_pred HHH--HcCCHHHHHHHHHHh--------------------------hhHHHHHHHHHH-------hccHHHHHHHHHHc-
Confidence 000 145677777777641 134444432211 12345567777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHH
Q 004187 276 MYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355 (770)
Q Consensus 276 ~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~ 355 (770)
.++..|...+..+...|+++.|..+... +..+|+. ...+..+|++.|.+++|..+|++++...+. ...+|.
T Consensus 175 ----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~a-h~~~ft 245 (449)
T 1b89_A 175 ----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERA-HMGMFT 245 (449)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-CHHHHH
T ss_pred ----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHH-HHHHHH
Confidence 5789999999999999999998766654 3355544 235777888999999999999999988865 678888
Q ss_pred HHHHHHHHh--cCHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh------------C
Q 004187 356 QFIRFLRRT--EGVEAARKYFLDARKSPN-----FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR------------F 416 (770)
Q Consensus 356 ~~~~~~~r~--~~~e~A~~~f~~Al~~~~-----~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~------------~ 416 (770)
.++..+.+. ++..+..+.|...+..++ ...++|..+..+... .++++.|..+.-..... .
T Consensus 246 el~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~-~~e~d~A~~tm~~h~~~a~~~~~f~~~~~k 324 (449)
T 1b89_A 246 ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK-YEEYDNAIITMMNHPTDAWKEGQFKDIITK 324 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH-TTCHHHHHHHHHHSTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHhCChhhhhhHHHHHHHhc
Confidence 877777653 566677777776665554 456778888777655 48898887654333222 3
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004187 417 MHEPAYILEYADFLSRLNDDRNIRALFERAL 447 (770)
Q Consensus 417 p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL 447 (770)
+.+.++++.-+.|+... ...+..-+..+|
T Consensus 325 v~n~elyYkai~fyl~~--~p~~l~~ll~~l 353 (449)
T 1b89_A 325 VANVELYYRAIQFYLEF--KPLLLNDLLMVL 353 (449)
T ss_dssp CSSTHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 45678888888888833 233344444444
No 154
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=3.7e-09 Score=112.19 Aligned_cols=200 Identities=14% Similarity=0.045 Sum_probs=154.4
Q ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 262 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
+.+..+..+++++....+.. ++...+++++|...|+++ +.++...|++++|...|++
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHH
Confidence 34556777888888776642 111147888888888876 4567788999999999999
Q ss_pred HhccCCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC----C--CCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004187 342 LLTDSVNT-----TALAHIQFIRFLRRTEGVEAARKYFLDARKSP----N--FTYHVYVAYALMAFCQDKDPKLAHNVFE 410 (770)
Q Consensus 342 al~~~p~~-----~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~----~--~~~~~yi~~a~le~~~~g~~~~A~~ife 410 (770)
++...+.. ...++..++..+...|++++|+..|++|++.. . ....++.+++.+.. . |++++|...|+
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHH
Confidence 99764321 24578888999999999999999999998641 1 12456778888754 4 99999999999
Q ss_pred HHHHhCCCc------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCch----hHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004187 411 AGLKRFMHE------PAYILEYADFLSRLNDDRNIRALFERALSSLPPE----ESIEVWKRFTQFEQMYGDLDSTLKVEQ 480 (770)
Q Consensus 411 ~alk~~p~~------~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~----~~~~lw~~~~~fE~~~Gd~~~~~k~~~ 480 (770)
++++.++.. ..++..++.++..+|++++|..+|++++...+.. .....|...+......|+.+.+...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999987542 4678899999999999999999999999865421 123466666667777899999999999
Q ss_pred HHHHhcc
Q 004187 481 RRKEALS 487 (770)
Q Consensus 481 R~~~~~~ 487 (770)
++. ..|
T Consensus 220 ~al-~~p 225 (307)
T 2ifu_A 220 ESY-SIP 225 (307)
T ss_dssp HHT-TST
T ss_pred HHh-CCC
Confidence 999 776
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.90 E-value=3.6e-09 Score=119.06 Aligned_cols=129 Identities=10% Similarity=-0.069 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHh
Q 004187 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---------------EMLRYAFAELEESR 329 (770)
Q Consensus 265 ~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---------------~~lw~~~a~~~~~~ 329 (770)
++++..|++++...|.....|...+..+...|++++|+..|++|+..+|.+ ..+|+.+|.++.+.
T Consensus 251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456777888888889999999999999999999999999999999887 34455555555555
Q ss_pred CcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004187 330 GAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 394 (770)
Q Consensus 330 g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~l 394 (770)
|++++|...|+++++..|. ...+|+.++..+...+++++|+..|++|++..+.+..++..++.+
T Consensus 331 g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5555555555555555544 344444444444444444444444444444444333444444433
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.90 E-value=3.6e-08 Score=86.60 Aligned_cols=110 Identities=13% Similarity=-0.045 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004187 317 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAF 396 (770)
Q Consensus 317 ~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~ 396 (770)
..|+.+|..+...|++++|...|++++...|. ...+|..++..+...|++++|...|+++++..+....++..+|.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34455555555555555555555555555554 34555555555555555555555555555544444455555554444
Q ss_pred hcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004187 397 CQDKDPKLAHNVFEAGLKRFMHEPAYILEYAD 428 (770)
Q Consensus 397 ~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~ 428 (770)
.. |++++|.+.|+++++..|+++.++..++.
T Consensus 84 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FL-NRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HT-TCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 42 55555555555555555555544444433
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=3.2e-08 Score=91.15 Aligned_cols=118 Identities=9% Similarity=-0.125 Sum_probs=81.3
Q ss_pred CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHH
Q 004187 312 LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT---ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVY 388 (770)
Q Consensus 312 ~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~---~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~y 388 (770)
.|.+...|+..|..+...|++++|...|+++++..|. . ..+|..++..+...+++++|+..|+++++..+....+|
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 4566777777777777777777777777777777765 3 56666677766777777777777777776655556666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 389 VAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 431 (770)
Q Consensus 389 i~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~ 431 (770)
..++.++... |++++|..+|+++++..|++..++..+..+..
T Consensus 103 ~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKL-GRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 6666665554 67777777777777777776666665555543
No 158
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.90 E-value=2.8e-08 Score=114.77 Aligned_cols=173 Identities=14% Similarity=0.064 Sum_probs=150.6
Q ss_pred HcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 004187 294 KSG-SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGA----------IAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362 (770)
Q Consensus 294 ~~g-~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~----------~e~A~~iye~al~~~p~~~~~~w~~~~~~~~ 362 (770)
..| ..++|++.+++++..+|++..+|...+.++...++ ++++.+.++++++.+|. ...+|...+-...
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 344 35688999999999999999999999999998887 99999999999999998 8999999999999
Q ss_pred Hhc--CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc------
Q 004187 363 RTE--GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDK-DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL------ 433 (770)
Q Consensus 363 r~~--~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g-~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~------ 433 (770)
+.+ +++++..+++++++.++.+.++|...+.+.... | ..+++.+.++++++.+|++...|......+..+
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 988 779999999999999999999999998887775 6 899999999999999999999999888877764
Q ss_pred --------CChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcC
Q 004187 434 --------NDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG 470 (770)
Q Consensus 434 --------g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~G 470 (770)
+.++++.+.+++|+...| ++...|.....+....|
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P--~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDP--NDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCS--SCSHHHHHHHHHHSCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCC
Confidence 446899999999999999 55677766554443333
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.89 E-value=2.4e-09 Score=105.45 Aligned_cols=127 Identities=14% Similarity=0.004 Sum_probs=110.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE----------------MLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~----------------~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
.+.....|...|..+...|++++|+..|++++...|.+. .+|+.+|.++...|++++|...|++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 334457789999999999999999999999999999876 8999999999999999999999999
Q ss_pred HhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 004187 342 LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAH 406 (770)
Q Consensus 342 al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~ 406 (770)
+++..|. ...+|+.++..+...|++++|+..|+++++..+....++..++.+.... ++.+++.
T Consensus 114 al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~~~ 176 (198)
T 2fbn_A 114 VLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL-KEARKKD 176 (198)
T ss_dssp HHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-HHHHC--
T ss_pred HHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999997 7899999999999999999999999999998888888888887776553 4444443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.88 E-value=1.6e-08 Score=92.35 Aligned_cols=106 Identities=8% Similarity=-0.142 Sum_probs=66.8
Q ss_pred hCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHH
Q 004187 311 ALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 390 (770)
Q Consensus 311 ~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~ 390 (770)
..|.+...|+.+|..+...|++++|...|++++...|. ...+|..++..+...++++.|+..|+++++..+....+|..
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34556666666666666667777777777776666665 45666666666666666666666666666655555666666
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 391 YALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 391 ~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
+|.+.... |++++|...|+++++..|+
T Consensus 83 l~~~~~~~-~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEM-ESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hhHHHHHHHHHHHHHHChh
Confidence 66665553 6666666666666665544
No 161
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.88 E-value=1.7e-09 Score=116.68 Aligned_cols=155 Identities=10% Similarity=-0.010 Sum_probs=74.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHH
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQF 357 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~ 357 (770)
.+.....|...+..+...|++++|+..|++++...|++..+ ...++++++...+. ..+|..+
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------~~~~~~~~~~~~l~----------~~~~~nl 236 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLYGKYQDMALAVK----------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH--------TCCHHHHHHHHHHH----------THHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh--------hhcccHHHHHHHHH----------HHHHHHH
Confidence 34456779999999999999999999999999999987621 11122222222110 1355555
Q ss_pred HHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-hcCCh
Q 004187 358 IRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS-RLNDD 436 (770)
Q Consensus 358 ~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~-~~g~~ 436 (770)
+..+.+.+++++|+..|+++++..+....+|..+|.++... |++++|+..|+++++..|+++.++..+..+.. ..+..
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL-GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666655555555666666555543 66666666666666666666555555554432 23345
Q ss_pred hHHHHHHHHHHhCCC
Q 004187 437 RNIRALFERALSSLP 451 (770)
Q Consensus 437 ~~Ar~lferaL~~~p 451 (770)
+.++.+|.+++...|
T Consensus 316 ~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 316 QKQKEMYKGIFKGKD 330 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHhhCCCC
Confidence 555666666665544
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.87 E-value=1.2e-09 Score=123.04 Aligned_cols=169 Identities=9% Similarity=0.043 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHH
Q 004187 295 SGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYF 374 (770)
Q Consensus 295 ~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f 374 (770)
.+++++|++.|++++...|.....|..+|..+.+.|++++|...|+++++..|... ..+- +....
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~-~~~~------------~~~~~-- 311 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY-GLSE------------KESKA-- 311 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC-SCCH------------HHHHH--
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc-cCCh------------HHHHH--
Confidence 34566788888888888888889999999999999999999999999998877632 0000 00000
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchh
Q 004187 375 LDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEE 454 (770)
Q Consensus 375 ~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~ 454 (770)
..+....+|.++|.++... |++++|+..|+++++..|+++..|+..+..+..+|++++|+..|++|++..| +
T Consensus 312 -----~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~ 383 (457)
T 1kt0_A 312 -----SESFLLAAFLNLAMCYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--Q 383 (457)
T ss_dssp -----HHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred -----HHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C
Confidence 0000134455555554443 5666666666666666666555555566666666666666666666665555 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhc
Q 004187 455 SIEVWKRFTQFEQMYGDLDSTL-KVEQRRKEAL 486 (770)
Q Consensus 455 ~~~lw~~~~~fE~~~Gd~~~~~-k~~~R~~~~~ 486 (770)
+..+|..+..+....|+...+. +.+++++..+
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~ 416 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMFKKF 416 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555555555555544333 2334444333
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.86 E-value=3.4e-08 Score=90.26 Aligned_cols=101 Identities=13% Similarity=0.048 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc------HHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT------ALAHI 355 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~------~~~w~ 355 (770)
..+|..+|..+.+.|++++|+..|++|++.+|++..+|..+|.++...|++++|...|+++++..|... ..+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999998766421 23555
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCC
Q 004187 356 QFIRFLRRTEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 356 ~~~~~~~r~~~~e~A~~~f~~Al~~~~ 382 (770)
.++..+...+++++|+..|++++...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 566666666666666666666665433
No 164
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.86 E-value=1.7e-08 Score=92.79 Aligned_cols=112 Identities=10% Similarity=0.070 Sum_probs=86.4
Q ss_pred hCCCcHHHHHHHHHHHHHhCcH------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC
Q 004187 311 ALPDSEMLRYAFAELEESRGAI------AAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT 384 (770)
Q Consensus 311 ~~P~s~~lw~~~a~~~~~~g~~------e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~ 384 (770)
..|.+.+.|+.|+..+++.|+. ++.+++|++++...|.....-|-. .
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrr---------------------------Y 60 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNES---------------------------F 60 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHH---------------------------H
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHH---------------------------H
Confidence 4688999999999999888888 888888988888776521111211 2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 385 YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 385 ~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
..+|+.+|.++ .+ +|.++|+.+|+.+++.+..-+.+|+.|++|+.++|+...||.++.+|+...|
T Consensus 61 I~LWIrYA~~~-ei-~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 61 ARIQVRFAELK-AI-QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHHHHHHH-HH-HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-Hh-cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 45677777664 33 7899999999999877555688999999999999999999999999999877
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.85 E-value=1.5e-08 Score=88.28 Aligned_cols=106 Identities=12% Similarity=0.083 Sum_probs=88.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-cHHHHHH
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-TALAHIQ 356 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~-~~~~w~~ 356 (770)
+|.+..+|+.++..+...|++++|+..|++++...|.+..+|+.+|.++...|++++|...|+++++..|.. ...+|..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 467788888889999899999999999999999999888888888888888899999999999888887651 3678888
Q ss_pred HHHHHHHh-cCHHHHHHHHHHHHcCCCC
Q 004187 357 FIRFLRRT-EGVEAARKYFLDARKSPNF 383 (770)
Q Consensus 357 ~~~~~~r~-~~~e~A~~~f~~Al~~~~~ 383 (770)
++..+... |++++|++.|++++...+.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 88888888 8888888888888876543
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.82 E-value=4.8e-08 Score=88.17 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc---HHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE---MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT---ALAHIQ 356 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~---~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~---~~~w~~ 356 (770)
+.++..|..+...|++++|+..|++++...|++. .+|+.+|.++...|++++|...|++++...|. . ..+++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 3467778888888888888888888888888776 67888888888888888888888888887776 3 556666
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHH
Q 004187 357 FIRFLRRTEGVEAARKYFLDARKSPNFTYHVY 388 (770)
Q Consensus 357 ~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~y 388 (770)
++..+...|++++|+..|+++++..+....+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 66666666666666666666666554444333
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=2.9e-08 Score=96.97 Aligned_cols=155 Identities=16% Similarity=0.090 Sum_probs=105.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHHhcC
Q 004187 293 AKSGSIDAAIKVFQRALKALP-DSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN-----TTALAHIQFIRFLRRTEG 366 (770)
Q Consensus 293 ~~~g~~e~A~~v~erAi~~~P-~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~-----~~~~~w~~~~~~~~r~~~ 366 (770)
...|++++|.++++.... .| ....++..++.++...|++++|...|++++..... ....++..++..+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356778888775544433 44 56677788888888888888888888888763211 134567777778888888
Q ss_pred HHHHHHHHHHHHcC---CC----CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHhc
Q 004187 367 VEAARKYFLDARKS---PN----FTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM--HE----PAYILEYADFLSRL 433 (770)
Q Consensus 367 ~e~A~~~f~~Al~~---~~----~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p--~~----~~~~l~ya~~l~~~ 433 (770)
+++|+..|++++.. .+ ....++..++.+.... |++++|...|+++++... .+ ...+...+..+...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 88888888887764 11 1234566677776665 888888888888886532 22 23456777888888
Q ss_pred CChhHHHHHHHHHHhC
Q 004187 434 NDDRNIRALFERALSS 449 (770)
Q Consensus 434 g~~~~Ar~lferaL~~ 449 (770)
|++++|...|++++..
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8888888888888764
No 168
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=3.8e-07 Score=95.62 Aligned_cols=187 Identities=8% Similarity=-0.108 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC----C--H
Q 004187 317 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT-----ALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF----T--Y 385 (770)
Q Consensus 317 ~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~-----~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~----~--~ 385 (770)
..+...+..+...|++++|.+.|+++++..+... ...+..++.++...|++++|...|+++++.... . .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566777889999999999999998766421 123445667777789999999999999964221 1 5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH---HhCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc----hh
Q 004187 386 HVYVAYALMAFCQDKDPKLAHNVFEAGL---KRFMHEP----AYILEYADFLSRLNDDRNIRALFERALSSLPP----EE 454 (770)
Q Consensus 386 ~~yi~~a~le~~~~g~~~~A~~ife~al---k~~p~~~----~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~----~~ 454 (770)
.+|..+|.+.... |++++|...|++++ +..+++. .++...+.++..+|++++|...|++++...+. ..
T Consensus 156 ~~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 5788888887775 99999999999999 4566643 57889999999999999999999999986431 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhcccccccccchhhhhHHhhhhh
Q 004187 455 SIEVWKRFTQFEQMYGDLDST-LKVEQRRKEALSRTGEEGASALEDSLQDVVSR 507 (770)
Q Consensus 455 ~~~lw~~~~~fE~~~Gd~~~~-~k~~~R~~~~~~~~~e~~~~~~e~ll~~~~~R 507 (770)
...++...+......|+.+.+ ...++++.+.+... +...+...+.+.+.|
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~---~~~~~~~~~~~~~~~ 285 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL---EMHAYKEALVNKISR 285 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh---CcHhhHHHHHHHHHH
Confidence 367888888888899999998 77789888877621 112234445555555
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.81 E-value=4.4e-08 Score=87.75 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc-------HHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT-------ALA 353 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~-------~~~ 353 (770)
....|+.+|..+...|++++|...|++++...|.+..+|+.+|.++...|++++|...|++++...+. . ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999887654 2 456
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004187 354 HIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 392 (770)
Q Consensus 354 w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a 392 (770)
|..++..+...|++++|+..|+++++..+ ...++..++
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~ 119 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 66666666666666666666666666544 244444433
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.80 E-value=1.2e-08 Score=96.82 Aligned_cols=103 Identities=10% Similarity=-0.029 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKA------------------LPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~------------------~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al 343 (770)
...|...|..+...|++++|+..|++++.. .|.+..+|+.+|.++...|++++|...|++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 356788888899999999999999999988 44555666666666666666666666666666
Q ss_pred ccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCH
Q 004187 344 TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTY 385 (770)
Q Consensus 344 ~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~ 385 (770)
..+|. ...+|+.++..+...|++++|+..|+++++..|.+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 66665 455666666666666666666666666655544433
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.79 E-value=2.6e-08 Score=90.27 Aligned_cols=97 Identities=11% Similarity=-0.060 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 004187 354 HIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRL 433 (770)
Q Consensus 354 w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~ 433 (770)
|+..+..+.+.|++++|+..|+++++..+....+|..+|.+.... |+.++|...|+++++..|+++.+|..++.++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 455555555566666666666666665555566666666665553 6666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHhCCC
Q 004187 434 NDDRNIRALFERALSSLP 451 (770)
Q Consensus 434 g~~~~Ar~lferaL~~~p 451 (770)
|++++|...|+++++..|
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 666666666666666555
No 172
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.76 E-value=2.2e-07 Score=97.92 Aligned_cols=182 Identities=13% Similarity=0.068 Sum_probs=141.5
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 004187 301 AIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV-NTTALAHIQFIRFLRRTEGVEAARKYFLDARK 379 (770)
Q Consensus 301 A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p-~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~ 379 (770)
|+..|++.+...+.+...++.+|.++...|++++|.+++.+.+...+ .....++...+..+.+.|+.+.|++.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77888888877666666677889999999999999999999999886 22678999999999999999999999999987
Q ss_pred CCC------CCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004187 380 SPN------FTYHVYVAYALMAFCQ-DKDPKLAHNVFEAGLKRFMH--EPAYILEYADFLSRLNDDRNIRALFERALSSL 450 (770)
Q Consensus 380 ~~~------~~~~~yi~~a~le~~~-~g~~~~A~~ife~alk~~p~--~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~ 450 (770)
..+ ....+++.-+.+.... .+++..|..+|+.+.+.+|+ .+.+++. .+..+|++++|..+++.+++..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 665 2233333333333332 24899999999999999997 3444444 7889999999999999877653
Q ss_pred Cc--------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 451 PP--------EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 451 p~--------~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
|. .++.......+.+....|+ .+.+...++.+..|
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 21 1567888777777777887 66778888888877
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.74 E-value=6.7e-08 Score=86.52 Aligned_cols=113 Identities=10% Similarity=0.012 Sum_probs=74.7
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC-------HHH
Q 004187 315 SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT-------YHV 387 (770)
Q Consensus 315 s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~-------~~~ 387 (770)
....|+.+|..+...|++++|...|++++...|. ...+|..++..+...|++++|..+|++++...+.. ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3455667777777777777777777777777666 56677777777777777777777777776653332 556
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004187 388 YVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFL 430 (770)
Q Consensus 388 yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l 430 (770)
|..+|.+.... |++++|.+.|+++++..| ++.++..+..+.
T Consensus 82 ~~~la~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 82 YARIGNSYFKE-EKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 66666665554 777777777777777666 355555444443
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.74 E-value=4.3e-08 Score=85.33 Aligned_cols=99 Identities=8% Similarity=-0.077 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHH
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--EPAYILEYADF 429 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~--~~~~~l~ya~~ 429 (770)
.+|..++..+.+.+++++|...|+++++..+....+|..+|.+.... |++++|.+.|+++++..|+ +..+|..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL-ERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34455555555555555555555555555444455555666555553 6666666666666666666 66666666666
Q ss_pred HHhc-CChhHHHHHHHHHHhCCC
Q 004187 430 LSRL-NDDRNIRALFERALSSLP 451 (770)
Q Consensus 430 l~~~-g~~~~Ar~lferaL~~~p 451 (770)
+... |++++|...|++++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 6666 666666666666666555
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.73 E-value=1.1e-08 Score=115.81 Aligned_cols=114 Identities=15% Similarity=0.042 Sum_probs=87.2
Q ss_pred chhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 261 ASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 261 ~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
.+.++.++..|++++..+|.+..+|..+|.++...|++++|++.|+++++..|++..+|+.+|.++...|++++|.+.|+
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhccCCCCcHHHHHHHHHH--HHHhcCHHHHHHHHH
Q 004187 341 SLLTDSVNTTALAHIQFIRF--LRRTEGVEAARKYFL 375 (770)
Q Consensus 341 ~al~~~p~~~~~~w~~~~~~--~~r~~~~e~A~~~f~ 375 (770)
++++..|. ...+|..++.. +.+.+++++|+.+++
T Consensus 99 ~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 99 TVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888776 45566666655 666788888888887
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.72 E-value=2.5e-07 Score=83.37 Aligned_cols=107 Identities=15% Similarity=0.034 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcH---HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 004187 319 RYAFAELEESRGAIAAAKKLYESLLTDSVNTTA---LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFT---YHVYVAYA 392 (770)
Q Consensus 319 w~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~---~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~---~~~yi~~a 392 (770)
++..|..+...|++++|...|+++++..|. .. .+|+.++..+.+.|++++|+..|+++++..+.. ..++..+|
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 455666666777777777777777776665 22 566666666666677777777777766655544 55566666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004187 393 LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYA 427 (770)
Q Consensus 393 ~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya 427 (770)
.+.... |++++|...|+++++.+|+++.......
T Consensus 84 ~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 84 LSQYGE-GKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 665553 6677777777777766666655544333
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.70 E-value=1.3e-07 Score=89.49 Aligned_cols=98 Identities=13% Similarity=-0.007 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------cHH-----HHHHHHHHHHHhCcHHHHHHHHHHHhcc----
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPD-------SEM-----LRYAFAELEESRGAIAAAKKLYESLLTD---- 345 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~-------s~~-----lw~~~a~~~~~~g~~e~A~~iye~al~~---- 345 (770)
...|...+..+...|++++|+..|++|+..+|+ +.. +|...+.++..+|++++|...|+++|+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456888999999999999999999999999998 443 8888888888899999998888888887
Q ss_pred ---CCCCcHHHH----HHHHHHHHHhcCHHHHHHHHHHHHcC
Q 004187 346 ---SVNTTALAH----IQFIRFLRRTEGVEAARKYFLDARKS 380 (770)
Q Consensus 346 ---~p~~~~~~w----~~~~~~~~r~~~~e~A~~~f~~Al~~ 380 (770)
+|+ ...+| +..+..+...|++++|+..|+++++.
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 776 56677 66666666677777777777776654
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.67 E-value=1.5e-07 Score=89.28 Aligned_cols=103 Identities=9% Similarity=-0.083 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhcc------------------CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004187 316 EMLRYAFAELEESRGAIAAAKKLYESLLTD------------------SVNTTALAHIQFIRFLRRTEGVEAARKYFLDA 377 (770)
Q Consensus 316 ~~lw~~~a~~~~~~g~~e~A~~iye~al~~------------------~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~A 377 (770)
...+...|..+...|++++|...|++++.. .|. ...+|..++..+...|++++|+..|+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK-NIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT-HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 455677888888889999999999998887 222 3455666666666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcH
Q 004187 378 RKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP 420 (770)
Q Consensus 378 l~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~ 420 (770)
++..+....+|..+|.++... |++++|...|+++++..|+++
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAA-WKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGGH
T ss_pred HhcCCcchHHHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCCCH
Confidence 665555566666666655553 666666666666666666655
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.65 E-value=8.1e-07 Score=97.84 Aligned_cols=202 Identities=10% Similarity=0.025 Sum_probs=116.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRALKALPDSE-----------------MLRYAFAELEESRGAIAAAKKLYESLLTDSV 347 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~-----------------~lw~~~a~~~~~~g~~e~A~~iye~al~~~p 347 (770)
-+.-|.-+...|++++|++.|.++++..|... .....++.++...|++++|.+.|+++++..+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44455556666777777777777776665432 1345566666677777777777776665433
Q ss_pred CCc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 004187 348 NTT-----ALAHIQFIRFLRRTEGVEAARKYFLDARKS------PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF 416 (770)
Q Consensus 348 ~~~-----~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~------~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~ 416 (770)
... ..+...++.+....++++.|..++++++.. ......++..+|.+.... |++++|..+++.++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK-KQYKDSLALINDLLREF 165 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc-cChHHHHHHHHHHHHHH
Confidence 210 112233344444456667777777666532 122245666666665554 77777777777666542
Q ss_pred ------CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004187 417 ------MHEPAYILEYADFLSRLNDDRNIRALFERALSSL-----PPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEA 485 (770)
Q Consensus 417 ------p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~-----p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~ 485 (770)
+...+++...++++..+|++++|+.+|++++... |......++.....+....|+...+.+.+..+.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1123566666677777777777777777766531 11222445555555555566776666666666665
Q ss_pred cc
Q 004187 486 LS 487 (770)
Q Consensus 486 ~~ 487 (770)
++
T Consensus 246 ~~ 247 (434)
T 4b4t_Q 246 YH 247 (434)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 180
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.65 E-value=2.1e-07 Score=97.66 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=121.8
Q ss_pred hhhHHHHHHHHHHHHcCCCHHH-----HH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhC
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDI-----WY-DYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRG 330 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~-----w~-~~a~~l~~~g~~e~A~~v~erAi~~~P~s------~~lw~~~a~~~~~~g 330 (770)
.++.+...|++++...+..++. |+ ..+.++...+++++|+..|++++...+.. ..++..+|.++...|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 4567778899999877776652 33 36777777889999999999999964432 346888999999999
Q ss_pred cHHHHHHHHHHHhcc------CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHhc
Q 004187 331 AIAAAKKLYESLLTD------SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP------NFTYHVYVAYALMAFCQ 398 (770)
Q Consensus 331 ~~e~A~~iye~al~~------~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~------~~~~~~yi~~a~le~~~ 398 (770)
++++|...|+++++. .......++..++..+.+.|++++|+..|+++++.. .....+|...|.+....
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 249 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999952 111134688999999999999999999999998642 22367899999988776
Q ss_pred CC-CHHHHHHHHHHHHHhC
Q 004187 399 DK-DPKLAHNVFEAGLKRF 416 (770)
Q Consensus 399 ~g-~~~~A~~ife~alk~~ 416 (770)
| ++++|.+.|++++..+
T Consensus 250 -g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 250 -EYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp -TCCHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHH
Confidence 7 5699999999999753
No 181
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=2.1e-07 Score=90.76 Aligned_cols=138 Identities=11% Similarity=-0.009 Sum_probs=112.7
Q ss_pred cC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc---CC
Q 004187 278 LY-HYPDIWYDYATWNAKSGSIDAAIKVFQRALKA------LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTD---SV 347 (770)
Q Consensus 278 ~p-~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~------~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~---~p 347 (770)
+| ....+|..++.++...|++++|+..|++++.. .+....++..++.++...|++++|...|++++.. .+
T Consensus 21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 44 56789999999999999999999999999994 3344677889999999999999999999999987 33
Q ss_pred C---CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC----CCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 004187 348 N---TTALAHIQFIRFLRRTEGVEAARKYFLDARKS----PNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF 416 (770)
Q Consensus 348 ~---~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~----~~~--~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~ 416 (770)
+ ....++..++..+...|++++|+..|++++.. ... ...++..++.+.... |++++|...|+++++..
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE-KNLLEAQQHWLRARDIF 177 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 2 13456788899999999999999999999853 211 133456778777675 99999999999999864
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.64 E-value=1.8e-07 Score=102.08 Aligned_cols=139 Identities=11% Similarity=-0.035 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
...|...|..+...|++++|+..|+++++..+... . ....+...+..+. ...+|..++..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~-------~~~~~~~~~~~~~-~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------A-------AAEDADGAKLQPV-ALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------H-------HSCHHHHGGGHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------c-------ccChHHHHHHHHH-HHHHHHHHHHHH
Confidence 35688999999999999999999999998644321 0 0012233333333 456777777777
Q ss_pred HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHH
Q 004187 362 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIR 440 (770)
Q Consensus 362 ~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar 440 (770)
.+.+++++|+..|++|++..+....+|..+|.++... |++++|.+.|+++++..|+++.++..+..++..+++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL-KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777776777777777776664 78888888888888888888777777777777777666554
No 183
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.64 E-value=9.8e-08 Score=90.22 Aligned_cols=69 Identities=14% Similarity=0.008 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 004187 262 SSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI----------DAAIKVFQRALKALPDSEMLRYAFAELEESRG 330 (770)
Q Consensus 262 ~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~----------e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g 330 (770)
..++.++..|++++..+|.++++|+.++.++...+++ ++|+..|++|++.+|++..+|+.++..+...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3455566666666666666666666666666665543 35666666666666666666666655555443
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.61 E-value=8.5e-08 Score=108.43 Aligned_cols=164 Identities=10% Similarity=-0.058 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~ 362 (770)
+.|...|..+...|++++|++.|++|++..|++..+|+.+|.++...|++++|...|+++++..|. ...+|..++..+.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 345666777888999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred HhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCCHHHHHHHHH-----------HHHHhCCCc----------
Q 004187 363 RTEGVEAARKYFLDARKSPNFTYHVYVAYALM--AFCQDKDPKLAHNVFE-----------AGLKRFMHE---------- 419 (770)
Q Consensus 363 r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~l--e~~~~g~~~~A~~ife-----------~alk~~p~~---------- 419 (770)
..|++++|+..|+++++..+....++..++.+ .... |++++|.++|+ +++...|+.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~i 164 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-KAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKV 164 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHH-HHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHHhccccccchhHhhhhhhhccccccccccccccccc
Confidence 99999999999999999877666677776665 4454 89999999999 777765542
Q ss_pred -HHHHHHHHHHHHhcCCh--hHHHHHHHHHHh
Q 004187 420 -PAYILEYADFLSRLNDD--RNIRALFERALS 448 (770)
Q Consensus 420 -~~~~l~ya~~l~~~g~~--~~Ar~lferaL~ 448 (770)
...+...+..+...+.. +.+..+++++.+
T Consensus 165 tl~~l~~lie~l~~~~~l~e~~v~~L~~~a~e 196 (477)
T 1wao_1 165 TISFMKELMQWYKDQKKLHRKCAYQILVQVKE 196 (477)
T ss_dssp CHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 12333444444444433 344456665544
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.61 E-value=1.7e-07 Score=88.64 Aligned_cols=96 Identities=10% Similarity=-0.026 Sum_probs=84.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 004187 294 KSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAI----------AAAKKLYESLLTDSVNTTALAHIQFIRFLRR 363 (770)
Q Consensus 294 ~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~----------e~A~~iye~al~~~p~~~~~~w~~~~~~~~r 363 (770)
+.+.+++|++.|+++++.+|++...|+.++.++...+++ ++|+..|+++|+++|+ ...+|+.++..+..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999988764 6999999999999998 89999999999987
Q ss_pred hc-----------CHHHHHHHHHHHHcCCCCCHHHHHH
Q 004187 364 TE-----------GVEAARKYFLDARKSPNFTYHVYVA 390 (770)
Q Consensus 364 ~~-----------~~e~A~~~f~~Al~~~~~~~~~yi~ 390 (770)
.| ++++|+..|++|++..|.....+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 74 8999999999999988875544333
No 186
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.60 E-value=4.3e-07 Score=82.79 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc-------HHHHHH
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE-------PAYILE 425 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~-------~~~~l~ 425 (770)
+|..++..+.+.|++++|+..|++|++..|....+|.++|.+.... |++++|.+.|+++++..|+. ..++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh-hhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444432 44444444444444443322 123344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 426 YADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 426 ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
.+.++..+|++++|...|+++|...|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 44455555555555555555555433
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.60 E-value=8e-08 Score=85.96 Aligned_cols=85 Identities=14% Similarity=0.225 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 264 NKRIIFTYEQCLMY---LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 264 ~~r~~~~ye~aL~~---~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
++.++..|++++.. +|.+..+|+.++.++...|++++|+..|+++++..|++..+++.+|.++...|++++|...|+
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34456789999988 688889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCC
Q 004187 341 SLLTDSVN 348 (770)
Q Consensus 341 ~al~~~p~ 348 (770)
+++...|.
T Consensus 86 ~al~~~p~ 93 (117)
T 3k9i_A 86 KIIAETSD 93 (117)
T ss_dssp HHHHHHCC
T ss_pred HHHHhCCC
Confidence 99988877
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.60 E-value=3.7e-07 Score=99.66 Aligned_cols=139 Identities=13% Similarity=-0.027 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004187 317 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAF 396 (770)
Q Consensus 317 ~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~ 396 (770)
..|..+|..+...|++++|...|+++++..+. .. ....++++.+..+....+|.++|.+++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~-~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG-SR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc-Cc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777889999999999999999999986442 10 011123333334445788999999888
Q ss_pred hcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 004187 397 CQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTL 476 (770)
Q Consensus 397 ~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~ 476 (770)
.. |++++|.+.|+++++..|+++.+|+.++..+..+|++++|...|++|++..| ++..++..+.......|+.....
T Consensus 285 ~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KM-SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HT-TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 75 9999999999999999999999999999999999999999999999999988 56778888888887777776655
Q ss_pred H
Q 004187 477 K 477 (770)
Q Consensus 477 k 477 (770)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.59 E-value=3e-08 Score=106.91 Aligned_cols=154 Identities=9% Similarity=-0.022 Sum_probs=94.4
Q ss_pred CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004187 313 PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYA 392 (770)
Q Consensus 313 P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a 392 (770)
+.....|...|..+...|++++|...|++++...+. . ..+ ...+..+++...+. ..+|.++|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~-~-~~~-------~~~~~~~~~~~~l~---------~~~~~nla 237 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD-D-FMF-------QLYGKYQDMALAVK---------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH-H-HHH-------TCCHHHHHHHHHHH---------THHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-c-hhh-------hhcccHHHHHHHHH---------HHHHHHHH
Confidence 344566788899999999999999999999998875 1 111 12233334333221 24788889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-HcCC
Q 004187 393 LMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQ-MYGD 471 (770)
Q Consensus 393 ~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~-~~Gd 471 (770)
.++... |++++|...|+++++..|+++.+|+.++..+..+|++++|+..|+++++..| ++..++..+..+.. ..+.
T Consensus 238 ~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 238 ACLIKL-KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP--DDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHHTT-TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHH
Confidence 887775 9999999999999999999999999999999999999999999999999988 56777777777733 4567
Q ss_pred HHHHHHHHHHHHHhcc
Q 004187 472 LDSTLKVEQRRKEALS 487 (770)
Q Consensus 472 ~~~~~k~~~R~~~~~~ 487 (770)
.+...+.+++++...|
T Consensus 315 ~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 315 YQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHhhCCCC
Confidence 7778888999988887
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.59 E-value=2.9e-07 Score=85.30 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-----cH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-----TA 351 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s------~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~-----~~ 351 (770)
.++..++.++...|++++|+..|++++...+.. ..++..++.++...|++++|...|++++...+.. ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 467778888888888888888888888765432 1356667777777777777777777777643220 12
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDAR 378 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al 378 (770)
.++..++..+...|++++|...|++++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444445555555555555555544
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.57 E-value=5.3e-07 Score=80.02 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 004187 267 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS 346 (770)
Q Consensus 267 ~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~ 346 (770)
++..|++++..+|.++.+|+.+|.++...|++++|+..|++++...|++...|+.+|.++...|++++|+..|+++++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 004187 347 VN 348 (770)
Q Consensus 347 p~ 348 (770)
|.
T Consensus 84 ~~ 85 (115)
T 2kat_A 84 QS 85 (115)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.56 E-value=2.9e-07 Score=87.18 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHh-------CCCcHHHH----HHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004187 387 VYVAYALMAFCQDKDPKLAHNVFEAGLKR-------FMHEPAYI----LEYADFLSRLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 387 ~yi~~a~le~~~~g~~~~A~~ife~alk~-------~p~~~~~~----l~ya~~l~~~g~~~~Ar~lferaL~~~p 451 (770)
+|.+.+.++... |++++|...|+++|+. .|+++..| +..+..+..+|++++|...|+++++..|
T Consensus 59 a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 59 CHAGLAEALAGL-RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 778887777775 8888888888888888 89988888 8889999999999999999999998766
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.56 E-value=1.3e-07 Score=84.50 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHhcc---CCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 004187 330 GAIAAAKKLYESLLTD---SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAH 406 (770)
Q Consensus 330 g~~e~A~~iye~al~~---~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~ 406 (770)
|++++|...|+++++. .|. ...+|+.++..+...|++++|+..|+++++..+....++..++.++... |++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL-GRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-CCHHHHH
Confidence 3344444444444444 122 2334444444444444444444444444444333444444444444433 4444444
Q ss_pred HHHHHHHHhCCCcHH
Q 004187 407 NVFEAGLKRFMHEPA 421 (770)
Q Consensus 407 ~ife~alk~~p~~~~ 421 (770)
..|+++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 444444444444443
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.46 E-value=8.9e-07 Score=81.90 Aligned_cols=133 Identities=11% Similarity=-0.051 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC------C
Q 004187 316 EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNT-----TALAHIQFIRFLRRTEGVEAARKYFLDARKSPNF------T 384 (770)
Q Consensus 316 ~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~-----~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~------~ 384 (770)
..++..++.++...|++++|...|++++...+.. ...++..++..+...|++++|...|+++++..+. .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3466778888888899999999999888764321 1246777788888888888888888888753211 1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---C---cHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 385 YHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM---H---EPAYILEYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 385 ~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p---~---~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
..++..++.+.... |++++|...|+++++... + ....+...+.++...|++++|...|+++++.
T Consensus 89 ~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566677766664 888888888888877532 2 1345667777777888888888888888764
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.45 E-value=1.3e-06 Score=73.29 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHH
Q 004187 280 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIR 359 (770)
Q Consensus 280 ~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~ 359 (770)
.+..+|+.++..+...|++++|+..|++++...|++..+|+.++.++...|++++|...|+++++..|. ...+|..++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999887 6788888887
Q ss_pred HHHHh
Q 004187 360 FLRRT 364 (770)
Q Consensus 360 ~~~r~ 364 (770)
.+.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76554
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.9e-07 Score=80.34 Aligned_cols=93 Identities=11% Similarity=-0.009 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCc------HHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTT------ALAH 354 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~------~~~w 354 (770)
+.+.|+..|..+...|++++|+..|++++...|++..+|+.+|.++...|++++|...|+++++..|. . ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999987 4 5666
Q ss_pred HHHHHHHHHhcCHHHHHHHH
Q 004187 355 IQFIRFLRRTEGVEAARKYF 374 (770)
Q Consensus 355 ~~~~~~~~r~~~~e~A~~~f 374 (770)
..++..+...|.++.|...|
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 67776666666555544443
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.37 E-value=1.4e-06 Score=75.65 Aligned_cols=71 Identities=18% Similarity=0.128 Sum_probs=65.2
Q ss_pred HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 004187 277 YLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSV 347 (770)
Q Consensus 277 ~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p 347 (770)
.+|.++.+|+.+|.++...|++++|+..|+++++..|++..+|+.+|.++...|++++|...|+++++..+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999998754
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.1e-05 Score=88.62 Aligned_cols=166 Identities=8% Similarity=0.010 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-----CcH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDS------EMLRYAFAELEESRGAIAAAKKLYESLLTDSVN-----TTA 351 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s------~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~-----~~~ 351 (770)
.++..++.++...|++++|.+.|++++...+.. ..+...++.++...|++++|..++++++..... ...
T Consensus 56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 356789999999999999999999999865532 234445666666789999999999998864221 146
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---CCc---
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKS------PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF---MHE--- 419 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~------~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~---p~~--- 419 (770)
.++..++..+...|++++|..++++++.. .+....+|+..+.+.... |++++|+.+|+++++.. ++.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL-RNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 78899999999999999999999998752 222356788888887775 99999999999999863 333
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 420 -PAYILEYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 420 -~~~~l~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
..++...+.++...+++++|...|..++..
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345667778888899999999999999874
No 199
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.31 E-value=4.6e-05 Score=78.59 Aligned_cols=175 Identities=18% Similarity=0.143 Sum_probs=116.6
Q ss_pred HHHHHHHHHHcCCCHHH-------HHHHHHHHHHcC--------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004187 268 IFTYEQCLMYLYHYPDI-------WYDYATWNAKSG--------------SIDAAIKVFQRALKALPDSEMLRYAFAELE 326 (770)
Q Consensus 268 ~~~ye~aL~~~p~~~~~-------w~~~a~~l~~~g--------------~~e~A~~v~erAi~~~P~s~~lw~~~a~~~ 326 (770)
+..|+-.+..+|.|... +..|+..+.+.. +...|+++|.|+... .+..+.
T Consensus 52 Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y---------~~raL~ 122 (301)
T 3u64_A 52 LKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY---------ALSSLE 122 (301)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH---------HHHHHH
Confidence 45788888999998864 445544333321 244566666666543 222222
Q ss_pred HHhCcHHHHH-----HHHHHHhccCCCCc--HHHHHHHHHHHH-H--hcC------HHHHHHHHHHHHcCCCC--CHHHH
Q 004187 327 ESRGAIAAAK-----KLYESLLTDSVNTT--ALAHIQFIRFLR-R--TEG------VEAARKYFLDARKSPNF--TYHVY 388 (770)
Q Consensus 327 ~~~g~~e~A~-----~iye~al~~~p~~~--~~~w~~~~~~~~-r--~~~------~e~A~~~f~~Al~~~~~--~~~~y 388 (770)
.....+.++. .-++.++....... ..+|...+..-. . .++ .+.|+..+++|++.++. ...+|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~ 202 (301)
T 3u64_A 123 TAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVW 202 (301)
T ss_dssp HHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHH
Confidence 2222222111 23344454333223 456655444221 1 233 57899999999999887 34588
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCC
Q 004187 389 VAYALMAFCQ----DKDPKLAHNVFEAGLKRFMHE-PAYILEYADFLSRL-NDDRNIRALFERALSSLP 451 (770)
Q Consensus 389 i~~a~le~~~----~g~~~~A~~ife~alk~~p~~-~~~~l~ya~~l~~~-g~~~~Ar~lferaL~~~p 451 (770)
..++.+++.. .|+.++|++.|+++++..|+. ...+..|++++... ++.+.++..+++|+..-|
T Consensus 203 ~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 203 NVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 8888886663 489999999999999999975 99999999999985 999999999999999755
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.30 E-value=4e-06 Score=74.24 Aligned_cols=82 Identities=11% Similarity=-0.065 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 369 AARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 369 ~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
.|+..|+++++..+....+|..+|.+.... |++++|...|+++++..|+++..|..++.++...|++++|+..|++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH-EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467778888887777788888888876664 8888888888888888888888888888888888888888888888887
Q ss_pred CCC
Q 004187 449 SLP 451 (770)
Q Consensus 449 ~~p 451 (770)
..|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 655
No 201
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.19 E-value=0.00017 Score=74.44 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=88.4
Q ss_pred HHHHHHHHHH--HHHcCCCCCCcchhhhHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHH
Q 004187 240 QWIAWKRLLT--FEKGNPQRIDTASSNKRIIFTYEQCLMYLYHY--PDIWYDYATWNAKS-----GSIDAAIKVFQRALK 310 (770)
Q Consensus 240 ~~~lw~~yi~--~ek~n~~~ld~~~~~~r~~~~ye~aL~~~p~~--~~~w~~~a~~l~~~-----g~~e~A~~v~erAi~ 310 (770)
..-.|...+. |...+..++......+.+...++++++.+|.. ..+|..++.+|... |+.++|++.|+||++
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~ 232 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR 232 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence 3457766553 33334444555567788889999999999994 55999999999885 899999999999999
Q ss_pred hCCCc-HHHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCC
Q 004187 311 ALPDS-EMLRYAFAELEES-RGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 311 ~~P~s-~~lw~~~a~~~~~-~g~~e~A~~iye~al~~~p~ 348 (770)
.+|+. ...++.||.++.. .|+.+++...++++++..|.
T Consensus 233 LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 233 YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99975 9999999999987 49999999999999998776
No 202
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.18 E-value=0.00018 Score=81.57 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH---------hCcHHHHHHHHHHHhccCCCCcHHH
Q 004187 284 IWYDYATWNAKSGSIDAAIKVFQRALKA-LPDSEMLRYAFAELEES---------RGAIAAAKKLYESLLTDSVNTTALA 353 (770)
Q Consensus 284 ~w~~~a~~l~~~g~~e~A~~v~erAi~~-~P~s~~lw~~~a~~~~~---------~g~~e~A~~iye~al~~~p~~~~~~ 353 (770)
++......+.+.|+.++|.++|++.... ..-+...|..+...+.. .+.+++|.++|++.....-..+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555667778899999999999999885 44455566665555443 2457899999999887644335788
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH
Q 004187 354 HIQFIRFLRRTEGVEAARKYFLDARKSP-NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR-FMHEPAYILEYADFLS 431 (770)
Q Consensus 354 w~~~~~~~~r~~~~e~A~~~f~~Al~~~-~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~-~p~~~~~~l~ya~~l~ 431 (770)
|..++..+.+.|++++|..+|+++.+.+ ..+...|..+.....+ .|+.++|.++|+.+.+. ..-+...|...+..+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998753 2246666666555445 49999999999999987 3335678889999999
Q ss_pred hcCChhHHHHHHHHHHh
Q 004187 432 RLNDDRNIRALFERALS 448 (770)
Q Consensus 432 ~~g~~~~Ar~lferaL~ 448 (770)
+.|+.++|..+|++.-.
T Consensus 187 ~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 99999999999998776
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.11 E-value=7.6e-06 Score=70.03 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 004187 286 YDYATWNAKSGSIDAAIKVFQRALKALPDSEM-LRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364 (770)
Q Consensus 286 ~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~-lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~ 364 (770)
+..|..+...|++++|+..|+++++..|++.. +|+.+|.++...|++++|...|+++++..|. ...+|..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------
Confidence 56677888889999999999999999999988 9999999999999999999999999999887 4555532
Q ss_pred cCHHHHHHHHHHHHc
Q 004187 365 EGVEAARKYFLDARK 379 (770)
Q Consensus 365 ~~~e~A~~~f~~Al~ 379 (770)
+.+.++...|++++.
T Consensus 75 ~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 KMVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHHhc
Confidence 344556666665543
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=2e-05 Score=65.75 Aligned_cols=79 Identities=10% Similarity=0.010 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 431 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~ 431 (770)
.+|..++..+...+++++|...|+++++..+....+|..++.+.... |++++|...|+++++..|+++.++..++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34444444444444444444444444444443444444444444442 55555555555555555555555444444443
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=2.7e-06 Score=74.02 Aligned_cols=86 Identities=8% Similarity=-0.094 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE------PAYILE 425 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~------~~~~l~ 425 (770)
.+|..++..+.+.|++++|+..|+++++..+....+|..+|.+.... |++++|.+.|+++++..|++ ..++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-GEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444442 45555555555555544444 344444
Q ss_pred HHHHHHhcCChhH
Q 004187 426 YADFLSRLNDDRN 438 (770)
Q Consensus 426 ya~~l~~~g~~~~ 438 (770)
.+..+..+|+++.
T Consensus 84 ~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 84 LELAQGAVGSVQI 96 (111)
T ss_dssp HHHHHHHHHCCCC
T ss_pred HHHHHHHHHhHhh
Confidence 4444444444333
No 206
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.01 E-value=0.00039 Score=78.70 Aligned_cols=168 Identities=12% Similarity=0.053 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHcCCC-CCHHH
Q 004187 318 LRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT---------EGVEAARKYFLDARKSPN-FTYHV 387 (770)
Q Consensus 318 lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~---------~~~e~A~~~f~~Al~~~~-~~~~~ 387 (770)
++....+.+.+.|++++|.++|+++.+..-..+...|..++..+.+. ++++.|.++|+++....- .+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455677778999999999999998764333466777777766543 347899999999987632 24667
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 004187 388 YVAYALMAFCQDKDPKLAHNVFEAGLKR-FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFE 466 (770)
Q Consensus 388 yi~~a~le~~~~g~~~~A~~ife~alk~-~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE 466 (770)
|..+.....+. |+.++|.++|+.+.+. ..-+...|...+..+.+.|+.++|..+|++..+.-- .-+...|..++...
T Consensus 108 yn~lI~~~~~~-g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~-~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 108 FTNGARLAVAK-DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV-VPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH
Confidence 77766665564 9999999999999886 334677888999999999999999999999987411 12356788888888
Q ss_pred HHcCCHHHHHHHHHHHHHhcc
Q 004187 467 QMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 467 ~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.+.|+.+.+.++++++.+.--
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTS
T ss_pred hhCCCHHHHHHHHHHHHHhCC
Confidence 899999999999999987654
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.98 E-value=4.5e-05 Score=65.87 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHh-cCCChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 004187 18 ADKYNVETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICL 87 (770)
Q Consensus 18 ~~P~d~~aw~~l~~~~-~~~~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p 87 (770)
.+|.+..+|..++..+ ..+++++|...|++++..+|++...|..++..+...|++++|...|++++...+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5899999999998855 557999999999999999999999999999999999999999999999998764
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.95 E-value=0.00019 Score=77.00 Aligned_cols=146 Identities=12% Similarity=0.040 Sum_probs=76.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH--HcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---C-----cHHHHHHH
Q 004187 272 EQCLMYLYHYPDIWYDYATWNA--KSG---SIDAAIKVFQRALKALPDSEMLRYAFAELEESR---G-----AIAAAKKL 338 (770)
Q Consensus 272 e~aL~~~p~~~~~w~~~a~~l~--~~g---~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~---g-----~~e~A~~i 338 (770)
+++....|.++++|-.|.+... ..+ +..+|+.+|++|++..|+...+|-.++.++... + ..+.....
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 3455566777777766654443 233 356789999999999999887776555544311 1 01111111
Q ss_pred HHH--HhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 004187 339 YES--LLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF 416 (770)
Q Consensus 339 ye~--al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~ 416 (770)
++. ++...+. .+.+|..++......|+++.|+..+++|+..++ ++..|+.++.+.... |+.++|.+.|++++...
T Consensus 264 ~~a~~a~~~~~~-~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~-G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 264 IDNIVTLPELNN-LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMK-GMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHHTCGGGTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS
T ss_pred HHHHHhcccCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC
Confidence 211 1122233 344444444444444555555555555555543 244444444443332 55555555555555555
Q ss_pred CCcH
Q 004187 417 MHEP 420 (770)
Q Consensus 417 p~~~ 420 (770)
|..+
T Consensus 341 P~~~ 344 (372)
T 3ly7_A 341 PGAN 344 (372)
T ss_dssp CSHH
T ss_pred CCcC
Confidence 5543
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.94 E-value=4.9e-05 Score=65.24 Aligned_cols=71 Identities=15% Similarity=-0.077 Sum_probs=65.6
Q ss_pred cCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 278 LYHYPDIWYDYATWNAKSGS---IDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~---~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
+|.++++|..+|..+...++ .++|...|+++++.+|++...++.+|..+.+.|++++|...|+++++..|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68899999999999976655 789999999999999999999999999999999999999999999998886
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=3.6e-05 Score=86.86 Aligned_cols=95 Identities=9% Similarity=-0.012 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcC-----CCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----CCc
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKS-----PNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF-----MHE 419 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~-----~~~---~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~-----p~~ 419 (770)
++..++..+..+|++++|+.+++++++. ++. ....+.++|.++..+ |++++|..+|+++++.. ++.
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~-G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA-GHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444444455555555555544431 121 234455555555543 66666666666666531 333
Q ss_pred H---HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 420 P---AYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 420 ~---~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
| ++.......+..++.+++|-.+|.++.+
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3334445555566666666666666554
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00031 Score=64.66 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=35.4
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004187 322 FAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR----TEGVEAARKYFLDARKSPNFTYHVYVAYALMAFC 397 (770)
Q Consensus 322 ~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r----~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~ 397 (770)
++.++...+.+++|...|+++.+.. ...+++.++.++.. .+++++|..+|++|.+.. ....+..++.+...
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHC
Confidence 3344433344444444444444431 23344444444443 344444444444444432 13333444443322
Q ss_pred ---cCCCHHHHHHHHHHHHH
Q 004187 398 ---QDKDPKLAHNVFEAGLK 414 (770)
Q Consensus 398 ---~~g~~~~A~~ife~alk 414 (770)
..+|.++|.+.|+++.+
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHH
Confidence 01344444444444443
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00038 Score=64.10 Aligned_cols=111 Identities=11% Similarity=-0.039 Sum_probs=96.3
Q ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hCcHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEES----RGAIAAAKKL 338 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~----~g~~e~A~~i 338 (770)
..++++..|+++.... ++.+. ++.++...+..++|.+.|+++.+. .+...++.++.++.. .+++++|...
T Consensus 10 d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4567788999998765 44444 888888888899999999999997 788899999999998 7999999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHcCCC
Q 004187 339 YESLLTDSVNTTALAHIQFIRFLRR----TEGVEAARKYFLDARKSPN 382 (770)
Q Consensus 339 ye~al~~~p~~~~~~w~~~~~~~~r----~~~~e~A~~~f~~Al~~~~ 382 (770)
|+++.+.. ...++..++.++.. .+++++|..+|++|.+...
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999874 47899999999998 8999999999999998754
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.80 E-value=3e-05 Score=66.18 Aligned_cols=67 Identities=13% Similarity=-0.026 Sum_probs=39.9
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhccCCCCcHH-HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHH
Q 004187 321 AFAELEESRGAIAAAKKLYESLLTDSVNTTAL-AHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVY 388 (770)
Q Consensus 321 ~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~-~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~y 388 (770)
..|..+...|++++|...|+++++..|. ... +|+.++..+...|++++|+..|+++++..+....++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455555666666666666666666665 445 666666666666666666666666665555444443
No 214
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=6.8e-05 Score=84.58 Aligned_cols=61 Identities=3% Similarity=-0.110 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHh----C-CCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 387 VYVAYALMAFCQDKDPKLAHNVFEAGLKR----F-MHEP---AYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 387 ~yi~~a~le~~~~g~~~~A~~ife~alk~----~-p~~~---~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
++.++|.++... |++++|..+|+++++. + ++.| ..+...+..+..+|++++|..+|++||.
T Consensus 353 ~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 353 LLSIASEVLSYL-QAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444443332 5555555555555543 1 2222 2334444555555555555555555554
No 215
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.0019 Score=62.68 Aligned_cols=120 Identities=16% Similarity=0.211 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcC-CCCCCcchhhhHHH-HHHHHHHHHcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004187 241 WIAWKRLLTFEKGN-PQRIDTASSNKRII-FTYEQCLMYLYH---------YPDIWYDYATWNAKSGSIDAAIKVFQRAL 309 (770)
Q Consensus 241 ~~lw~~yi~~ek~n-~~~ld~~~~~~r~~-~~ye~aL~~~p~---------~~~~w~~~a~~l~~~g~~e~A~~v~erAi 309 (770)
++.|.+||.|...+ |..- ......+. .++++|+..+-+ +..+|+.||.+. ..++..++.++|.-..
T Consensus 30 L~~w~~YIkW~ee~yP~g~--~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~ 106 (202)
T 3esl_A 30 LDLFLDYMIWISTSYIEVD--SESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMF 106 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCC--CcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHH
Confidence 57999999997643 2110 00012345 689999986533 447999999986 2344678999999888
Q ss_pred Hh--CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 004187 310 KA--LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 363 (770)
Q Consensus 310 ~~--~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r 363 (770)
.. .-....+|..+|.+++..|++.+|.++|+..++..-.....+.-.+..|..|
T Consensus 107 ~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 107 NKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 75 3567899999999999999999999999999988765334455555566555
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.59 E-value=0.00049 Score=64.19 Aligned_cols=89 Identities=13% Similarity=0.025 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHhCcHHHHHHH
Q 004187 264 NKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG---SIDAAIKVFQRALKAL-P-DSEMLRYAFAELEESRGAIAAAKKL 338 (770)
Q Consensus 264 ~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g---~~e~A~~v~erAi~~~-P-~s~~lw~~~a~~~~~~g~~e~A~~i 338 (770)
..++...|++.+...+.+.++.++||..+.++. ++++++.+|+..++.. | ...+.++.+|..+.+.|++++|++.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345566888888888899999999999999988 6679999999999998 7 5688999999999999999999999
Q ss_pred HHHHhccCCCCcHHH
Q 004187 339 YESLLTDSVNTTALA 353 (770)
Q Consensus 339 ye~al~~~p~~~~~~ 353 (770)
++++|+..|. +..+
T Consensus 94 ~~~lL~ieP~-n~QA 107 (152)
T 1pc2_A 94 VRGLLQTEPQ-NNQA 107 (152)
T ss_dssp HHHHHHHCTT-CHHH
T ss_pred HHHHHhcCCC-CHHH
Confidence 9999999997 4444
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.58 E-value=0.00087 Score=71.83 Aligned_cols=157 Identities=15% Similarity=0.089 Sum_probs=107.1
Q ss_pred HHHHHHhCCCcHHHHHHH--HHHHHHh---CcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH--HH-hc-----CHHHHH
Q 004187 305 FQRALKALPDSEMLRYAF--AELEESR---GAIAAAKKLYESLLTDSVNTTALAHIQFIRFL--RR-TE-----GVEAAR 371 (770)
Q Consensus 305 ~erAi~~~P~s~~lw~~~--a~~~~~~---g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~--~r-~~-----~~e~A~ 371 (770)
.+++...-|.+...|-.| |.-+... .+..+|+.+|+++++.+|+ +..+|..++..+ .. .+ ......
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~ 261 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALN 261 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHH
Confidence 455666677776665444 3333333 4458899999999999998 666665333222 11 11 122333
Q ss_pred HHHHHHH--cCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 372 KYFLDAR--KSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 372 ~~f~~Al--~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
..++.+. ...+....+|..++.+.... |+++.|...+++++..+|+ ...|...+..+...|++++|...|++|+..
T Consensus 262 ~a~~a~~a~~~~~~~a~~~~alal~~l~~-gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 262 TEIDNIVTLPELNNLSIIYQIKAVSALVK-GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHTCGGGTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444322 33456688888887776664 9999999999999999865 566778888899999999999999999999
Q ss_pred CCchhHHHHHHHHHHH
Q 004187 450 LPPEESIEVWKRFTQF 465 (770)
Q Consensus 450 ~p~~~~~~lw~~~~~f 465 (770)
.|.. ..-.|..-+.|
T Consensus 340 ~P~~-~t~~~~~~l~F 354 (372)
T 3ly7_A 340 RPGA-NTLYWIENGIF 354 (372)
T ss_dssp SCSH-HHHHHHHHSSS
T ss_pred CCCc-ChHHHHhCcee
Confidence 8833 35555544444
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.55 E-value=0.00035 Score=59.77 Aligned_cols=76 Identities=11% Similarity=-0.046 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHh-cCC---ChhhHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCChHHHH
Q 004187 18 ADKYNVETAEILANSA-LHL---PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWR 93 (770)
Q Consensus 18 ~~P~d~~aw~~l~~~~-~~~---~i~~Ar~~ye~~l~~fP~~~~~W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~~lW~ 93 (770)
.+|.|.+.|..++..+ ... ..++|+.++++++..+|++.+.+..++..+.+.|++++|...|++++...|. ..|.
T Consensus 1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~ 79 (93)
T 3bee_A 1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDR 79 (93)
T ss_dssp -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccH
Confidence 3799999999998855 222 3689999999999999999999999999999999999999999999999987 6564
Q ss_pred H
Q 004187 94 C 94 (770)
Q Consensus 94 ~ 94 (770)
.
T Consensus 80 ~ 80 (93)
T 3bee_A 80 V 80 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 219
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.41 E-value=0.0044 Score=61.17 Aligned_cols=114 Identities=18% Similarity=0.337 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHc-CCCCCCcchhhhHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004187 241 WIAWKRLLTFEKG-NPQRIDTASSNKRIIFTYEQCLMYLYH---------YPDIWYDYATWNAKSGSIDAAIKVFQRALK 310 (770)
Q Consensus 241 ~~lw~~yi~~ek~-n~~~ld~~~~~~r~~~~ye~aL~~~p~---------~~~~w~~~a~~l~~~g~~e~A~~v~erAi~ 310 (770)
+..|.+||.|... .|..-. ....+..++++|+..+.+ +..+|+.|+.+. +.+.++|.-...
T Consensus 72 L~~w~~YIkW~ee~yP~g~~---~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~ 142 (223)
T 4aez_C 72 LQVWIDYIKWTLDNFPQGET---KTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAH 142 (223)
T ss_dssp HHHHHHHHHHHHHHCTTCCC---TTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCcCCCc---chhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHH
Confidence 5799999999664 343211 112345689999987644 347999999852 457788888877
Q ss_pred h--CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 004187 311 A--LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRR 363 (770)
Q Consensus 311 ~--~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r 363 (770)
. .-....+|..+|.+++..|++.+|..||+..++..-.....+--.+..|..|
T Consensus 143 ~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 143 HHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp TTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 5 3567899999999999999999999999999987765334455555666554
No 220
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.37 E-value=0.0015 Score=60.81 Aligned_cols=112 Identities=17% Similarity=0.263 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHcC-CCCCCcchhhhHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004187 241 WIAWKRLLTFEKGN-PQRIDTASSNKRIIFTYEQCLMYLYH---------YPDIWYDYATWNAKSGSIDAAIKVFQRALK 310 (770)
Q Consensus 241 ~~lw~~yi~~ek~n-~~~ld~~~~~~r~~~~ye~aL~~~p~---------~~~~w~~~a~~l~~~g~~e~A~~v~erAi~ 310 (770)
++.|.+||.|.+.+ |... ..+..++++|+..+.+ +..+|+.|+.+. +++.++|+-...
T Consensus 26 L~~w~~YI~W~e~~~P~g~------~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~ 93 (152)
T 4a1g_A 26 LGEWERYIQWVEENFPENK------EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYN 93 (152)
T ss_dssp HHHHHHHHHHHHTTCSSCT------HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHH
Confidence 67999999997754 4321 2366789999986543 347999999764 337888888877
Q ss_pred h--CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 004187 311 A--LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364 (770)
Q Consensus 311 ~--~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~ 364 (770)
. .-....+|..+|.+++..|++.+|.++|+..++........+--.+..|..|.
T Consensus 94 ~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~ 149 (152)
T 4a1g_A 94 HGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQTRL 149 (152)
T ss_dssp TTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHh
Confidence 5 35678999999999999999999999999999887653345555666666553
No 221
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0045 Score=60.09 Aligned_cols=135 Identities=16% Similarity=0.338 Sum_probs=96.7
Q ss_pred ChhhHHHHHHHHHHh--CC--CcHHHHHHHHHHHHhc---CC---HHHHH-HHHHHHHhhcC-------C---hHHHHHH
Q 004187 37 PVAQAAPIYEQLLSV--FP--TAAKFWKQYVEAYMAV---NN---DDATK-QLFSRCLLICL-------Q---VPLWRCY 95 (770)
Q Consensus 37 ~i~~Ar~~ye~~l~~--fP--~~~~~W~~yi~~e~~~---~~---~~~a~-~ifeRaL~~~p-------~---~~lW~~y 95 (770)
.+++.|..||+-|.. +- +--..|..||.+-... |. -.... .+++||+..+- + +.+|+.|
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 467789999988877 22 2247899999987653 22 22355 89999998752 2 4799999
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHh-cCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHcccccc
Q 004187 96 IRFIRKVYEKKGTEGQEETRKAFDFMLSH-VGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHH 174 (770)
Q Consensus 96 ~~~~~~~~~~~~~~~~e~ar~~~e~aL~~-ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~ 174 (770)
+++... ++....+++|.+.... ||. ....+|..|+.+++. .+++..|..||+.+|..--..
T Consensus 87 a~~~~~-------~~~~~p~~if~~L~~~~IG~--~~AlfYe~wA~~lE~---------~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 87 INLFLS-------NNFHESENTFKYMFNKGIGT--KLSLFYEEFSKLLEN---------AQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHST-------TCHHHHHHHHHHHHHHTSST--TBHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTTCBS
T ss_pred HHhhcc-------cccCCHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCcc
Confidence 998521 1134667888877664 454 456799999999764 678999999999999874444
Q ss_pred HHHHHHHHHHHHHHh
Q 004187 175 VEQLWKDYENFENSV 189 (770)
Q Consensus 175 ~~~l~~~y~~fe~~~ 189 (770)
++.|-..|..|...+
T Consensus 149 ~~rL~~~~~~F~~R~ 163 (202)
T 3esl_A 149 YNRLLRSLSNYEDRL 163 (202)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777777653
No 222
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.24 E-value=0.0032 Score=59.30 Aligned_cols=114 Identities=13% Similarity=0.238 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHc-CCCCCCcchhhhHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004187 241 WIAWKRLLTFEKG-NPQRIDTASSNKRIIFTYEQCLMYLYH---------YPDIWYDYATWNAKSGSIDAAIKVFQRALK 310 (770)
Q Consensus 241 ~~lw~~yi~~ek~-n~~~ld~~~~~~r~~~~ye~aL~~~p~---------~~~~w~~~a~~l~~~g~~e~A~~v~erAi~ 310 (770)
+..|.+||.|... .|..- ....+..++++|+..+.+ +..+|+.|+.+. +.+.++|.-...
T Consensus 19 L~~w~~yIkW~e~~~p~~~----~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~ 88 (164)
T 2wvi_A 19 LDVWDRYISWTEQNYPQGG----KESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHN 88 (164)
T ss_dssp HHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCcCCC----ccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHH
Confidence 5799999999764 33211 111245589999987643 347999999874 336778888877
Q ss_pred h--CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 004187 311 A--LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364 (770)
Q Consensus 311 ~--~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~ 364 (770)
. .-....+|..+|.+++..|++.+|.+||+.+++........+--.+..|..|.
T Consensus 89 ~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 89 QGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARV 144 (164)
T ss_dssp TTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 5 45678999999999999999999999999999887653344555666666654
No 223
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.21 E-value=0.0015 Score=60.71 Aligned_cols=126 Identities=15% Similarity=0.335 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHhCCCc--HHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhcC-------C---hHHHHHHHHHHHHHh
Q 004187 39 AQAAPIYEQLLSVFPTA--AKFWKQYVEAYMAV---NNDDATKQLFSRCLLICL-------Q---VPLWRCYIRFIRKVY 103 (770)
Q Consensus 39 ~~Ar~~ye~~l~~fP~~--~~~W~~yi~~e~~~---~~~~~a~~ifeRaL~~~p-------~---~~lW~~y~~~~~~~~ 103 (770)
..++..||..|..+-.+ -..|..||.+-... |. .....+++||+..+- + +.+|+.|+++..
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~--- 82 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNS--- 82 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBS---
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcC---
Confidence 34777899888765332 36899999988764 33 347889999998862 2 468998888742
Q ss_pred hccCcchHHHHHHHHHHHHHh-cCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHH
Q 004187 104 EKKGTEGQEETRKAFDFMLSH-VGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDY 182 (770)
Q Consensus 104 ~~~~~~~~e~ar~~~e~aL~~-ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y 182 (770)
..+++|.+.... ||. ....+|..|+.+++. .+++..|..||+.+|+.--..++.|-..|
T Consensus 83 ---------dp~~if~~L~~~~IG~--~~AlfYe~wA~~lE~---------~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 83 ---------DLHQFFEFLYNHGIGT--LSSPLYIAWAGHLEA---------QGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp ---------CHHHHHHHHHTTTTTT--TBHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred ---------CHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 257788876654 443 456799999999764 67899999999999987333445666777
Q ss_pred HHHHHH
Q 004187 183 ENFENS 188 (770)
Q Consensus 183 ~~fe~~ 188 (770)
..|...
T Consensus 143 ~~F~~R 148 (152)
T 4a1g_A 143 RLFQTR 148 (152)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 777643
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.18 E-value=0.0023 Score=59.61 Aligned_cols=90 Identities=18% Similarity=0.026 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC---cHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 004187 298 IDAAIKVFQRALKALPDSEMLRYAFAELEESRG---AIAAAKKLYESLLTDS-VNTTALAHIQFIRFLRRTEGVEAARKY 373 (770)
Q Consensus 298 ~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g---~~e~A~~iye~al~~~-p~~~~~~w~~~~~~~~r~~~~e~A~~~ 373 (770)
+..+++.|++.+...+.+....|.||-++.+.. +++++..+++.+++.. |....+.++.++-.+.+.+++++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 445667777777777777888888888777765 6667788888777766 422456666666666777777777777
Q ss_pred HHHHHcCCCCCHHH
Q 004187 374 FLDARKSPNFTYHV 387 (770)
Q Consensus 374 f~~Al~~~~~~~~~ 387 (770)
|+++++..|.+.++
T Consensus 94 ~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 94 VRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHCTTCHHH
T ss_pred HHHHHhcCCCCHHH
Confidence 77777666654443
No 225
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.14 E-value=0.0029 Score=62.50 Aligned_cols=129 Identities=17% Similarity=0.380 Sum_probs=93.5
Q ss_pred ChhhHHHHHHHHHHhC---CCcHHHHHHHHHHHHhc---C-C-HHHHHHHHHHHHhhcC-------C---hHHHHHHHHH
Q 004187 37 PVAQAAPIYEQLLSVF---PTAAKFWKQYVEAYMAV---N-N-DDATKQLFSRCLLICL-------Q---VPLWRCYIRF 98 (770)
Q Consensus 37 ~i~~Ar~~ye~~l~~f---P~~~~~W~~yi~~e~~~---~-~-~~~a~~ifeRaL~~~p-------~---~~lW~~y~~~ 98 (770)
.+++.+..||..|... .+-...|..||.+-... | + -.....+++||+..+- + +.+|+.|+++
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~ 129 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc
Confidence 3677889999888762 34458899999988764 2 2 2346789999999862 2 4799999986
Q ss_pred HHHHhhccCcchHHHHHHHHHHHHHh-cCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHHH
Q 004187 99 IRKVYEKKGTEGQEETRKAFDFMLSH-VGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQ 177 (770)
Q Consensus 99 ~~~~~~~~~~~~~e~ar~~~e~aL~~-ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~ 177 (770)
.. ..+++|.+.... ||. ....+|..|+.+++. .+++..|..||+.+|..--..++.
T Consensus 130 ~~------------~p~~if~~L~~~~IG~--~~AlfYe~wA~~lE~---------~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 130 ID------------EPVELFSFLAHHHIGQ--ESSIFYEEYANYFES---------RGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CS------------CHHHHHHHHHHTTCST--TBHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cC------------CHHHHHHHHHHCCcch--hHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCccHHH
Confidence 31 346788877654 443 456799999999764 678999999999999873334456
Q ss_pred HHHHHHHHHHH
Q 004187 178 LWKDYENFENS 188 (770)
Q Consensus 178 l~~~y~~fe~~ 188 (770)
|-..|..|+..
T Consensus 187 L~~~~~~F~~R 197 (223)
T 4aez_C 187 FQQKYQQFTHR 197 (223)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66677777643
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.94 E-value=0.0064 Score=52.72 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHH
Q 004187 281 YPDIWYDYATWNAKSGSIDAAIKVFQRALKAL-------PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALA 353 (770)
Q Consensus 281 ~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~-------P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~ 353 (770)
+++-.+.+|..+...+++..|...|+.|++.. +....++..++.++.+.|++++|...++++++..|. ...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHH
Confidence 45667788999999999999999999998863 245778888888888889999999999999888887 4444
Q ss_pred HHHHH
Q 004187 354 HIQFI 358 (770)
Q Consensus 354 w~~~~ 358 (770)
...+.
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 44433
No 227
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.86 E-value=0.0025 Score=70.62 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcC-----CCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 353 AHIQFIRFLRRTEGVEAARKYFLDARKS-----PNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 353 ~w~~~~~~~~r~~~~e~A~~~f~~Al~~-----~~~---~~~~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
.+..++..+..+|++++|..+|+++++. ++. ....+.++|.++..+ |++++|..+|+++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~q-g~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGL-ENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHH
Confidence 3444444444455555555555554431 221 233455556555443 6666666666666654
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.84 E-value=0.01 Score=51.41 Aligned_cols=75 Identities=8% Similarity=-0.118 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKS-------PNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~-------~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l 424 (770)
.-.+.++..+.+.++++.|..+|++|++. +.....++..++...+.. |+++.|...++++++..|+++.+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34455666666666666666666666642 122355666666666664 7777777777777777777766654
Q ss_pred HHH
Q 004187 425 EYA 427 (770)
Q Consensus 425 ~ya 427 (770)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 229
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.75 E-value=0.012 Score=55.43 Aligned_cols=125 Identities=14% Similarity=0.301 Sum_probs=85.4
Q ss_pred HHHHHHHHhCCC--cHHHHHHHHHHHHhc---CCH-HHHHHHHHHHHhhcC-------C---hHHHHHHHHHHHHHhhcc
Q 004187 43 PIYEQLLSVFPT--AAKFWKQYVEAYMAV---NND-DATKQLFSRCLLICL-------Q---VPLWRCYIRFIRKVYEKK 106 (770)
Q Consensus 43 ~~ye~~l~~fP~--~~~~W~~yi~~e~~~---~~~-~~a~~ifeRaL~~~p-------~---~~lW~~y~~~~~~~~~~~ 106 (770)
..||..|...-. -...|..||.+.... |.. .....+++||+..+- + +.+|+.|+++. .
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~--- 77 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N--- 77 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---
Confidence 456666643221 246899999887652 222 245678999998862 2 46899888874 1
Q ss_pred CcchHHHHHHHHHHHHHh-cCCCCCChhhHHHHHHHHhhCCcCchHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH
Q 004187 107 GTEGQEETRKAFDFMLSH-VGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENF 185 (770)
Q Consensus 107 ~~~~~e~ar~~~e~aL~~-ig~dp~s~~lW~~yi~fl~~~~~~~~~~~~~~~~~ar~vyqral~~P~~~~~~l~~~y~~f 185 (770)
..+++|.+.... ||. ....+|..|+.+++. .+++..|..||+.+|..--..++.|-..|..|
T Consensus 78 ------~p~~if~~L~~~~IG~--~~AlfY~~wA~~lE~---------~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F 140 (164)
T 2wvi_A 78 ------EPLDMYSYLHNQGIGV--SLAQFYISWAEEYEA---------RENFRKADAIFQEGIQQKAEPLERLQSQHRQF 140 (164)
T ss_dssp ------CHHHHHHHHHHTTSST--TBHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHCCcch--hhHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 245677766654 443 456799999999764 57899999999999987444456777788888
Q ss_pred HHHhh
Q 004187 186 ENSVS 190 (770)
Q Consensus 186 e~~~~ 190 (770)
...+.
T Consensus 141 ~~R~~ 145 (164)
T 2wvi_A 141 QARVS 145 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 230
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.36 E-value=0.0057 Score=67.68 Aligned_cols=82 Identities=15% Similarity=0.010 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHHHH-----cCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHH
Q 004187 263 SNKRIIFTYEQCLMY-----LYHYPD---IWYDYATWNAKSGSIDAAIKVFQRALKA-----LPDS---EMLRYAFAELE 326 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~-----~p~~~~---~w~~~a~~l~~~g~~e~A~~v~erAi~~-----~P~s---~~lw~~~a~~~ 326 (770)
.++.+...|+++|.. .++|+. .+..+|.+|..+|++++|...|++++.. -|++ ...+..+|.++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 345556666666653 244443 4556666666677777777777776653 1222 33455666666
Q ss_pred HHhCcHHHHHHHHHHHhc
Q 004187 327 ESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 327 ~~~g~~e~A~~iye~al~ 344 (770)
..+|++++|..+|+++++
T Consensus 393 ~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 666666666666666665
No 231
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.34 E-value=0.01 Score=65.51 Aligned_cols=87 Identities=7% Similarity=-0.091 Sum_probs=48.9
Q ss_pred HhCcHHHHHHHHHHHhccCC-----CC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-----CCC---CHHHHHHHH
Q 004187 328 SRGAIAAAKKLYESLLTDSV-----NT--TALAHIQFIRFLRRTEGVEAARKYFLDARKS-----PNF---TYHVYVAYA 392 (770)
Q Consensus 328 ~~g~~e~A~~iye~al~~~p-----~~--~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~-----~~~---~~~~yi~~a 392 (770)
..|++++|...|+++++... +. ...++..++..+..+|++++|..++++++.. ++. ....+.++|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 34566666666666664321 10 2344555555666666666666666666532 222 234466666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHh
Q 004187 393 LMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 393 ~le~~~~g~~~~A~~ife~alk~ 415 (770)
.++... |++++|..+|+++++.
T Consensus 379 ~~~~~~-g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 379 KLQLHQ-GMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHhc-CCHHHHHHHHHHHHHH
Confidence 665553 7777777777777764
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.04 E-value=0.049 Score=48.89 Aligned_cols=87 Identities=13% Similarity=0.027 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHhCcHHHHHHHHH
Q 004187 266 RIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDA---AIKVFQRALKAL-P-DSEMLRYAFAELEESRGAIAAAKKLYE 340 (770)
Q Consensus 266 r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~---A~~v~erAi~~~-P-~s~~lw~~~a~~~~~~g~~e~A~~iye 340 (770)
+....|++.+...+.+.++-+.||..+..+.+... ++.+++..++.. | ...+..+.+|..+.+.|+|++|+...+
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34557888888888999999999999999876554 889999988876 5 456777788888999999999999999
Q ss_pred HHhccCCCCcHHH
Q 004187 341 SLLTDSVNTTALA 353 (770)
Q Consensus 341 ~al~~~p~~~~~~ 353 (770)
.+|+..|. +..+
T Consensus 99 ~lL~~eP~-n~QA 110 (126)
T 1nzn_A 99 GLLQTEPQ-NNQA 110 (126)
T ss_dssp HHHHHCTT-CHHH
T ss_pred HHHHhCCC-CHHH
Confidence 99999997 4444
No 233
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.83 E-value=0.025 Score=62.48 Aligned_cols=88 Identities=10% Similarity=-0.053 Sum_probs=69.6
Q ss_pred HHHhcCHHHHHHHHHHHHcC-----CCC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----C-CCcH---HHHH
Q 004187 361 LRRTEGVEAARKYFLDARKS-----PNF---TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR----F-MHEP---AYIL 424 (770)
Q Consensus 361 ~~r~~~~e~A~~~f~~Al~~-----~~~---~~~~yi~~a~le~~~~g~~~~A~~ife~alk~----~-p~~~---~~~l 424 (770)
+.++|.+++|+.+|+++++. ++. ...++.+++.+.... |++++|..+++++++. + ++.| ..+.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~-g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL-GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34578999999999999864 222 355677777776665 9999999999999975 2 4455 4567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 004187 425 EYADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 425 ~ya~~l~~~g~~~~Ar~lferaL~~ 449 (770)
..+..+..+|++++|..+|++|+..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999974
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.04 E-value=0.18 Score=45.24 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHhcCChhHHHH
Q 004187 367 VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDP---KLAHNVFEAGLKRF-M-HEPAYILEYADFLSRLNDDRNIRA 441 (770)
Q Consensus 367 ~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~---~~A~~ife~alk~~-p-~~~~~~l~ya~~l~~~g~~~~Ar~ 441 (770)
+..++.-|.+....+..+..+-.++|..+.+. ++. .+++.+++..++.. | ...+..+..+-.+.++|++++|+.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34445555555443334455555555444432 322 23555665555544 3 233455555555566666666666
Q ss_pred HHHHHHhCCC
Q 004187 442 LFERALSSLP 451 (770)
Q Consensus 442 lferaL~~~p 451 (770)
.++..|+.-|
T Consensus 96 ~~~~lL~~eP 105 (126)
T 1nzn_A 96 YVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCC
Confidence 6666666655
No 235
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.79 E-value=0.31 Score=45.66 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc---------------
Q 004187 263 SNKRIIFTYEQCLMYLYHY---------PDIWYDYATWNAKSGSIDAAIKVFQRALKA---LPDS--------------- 315 (770)
Q Consensus 263 ~~~r~~~~ye~aL~~~p~~---------~~~w~~~a~~l~~~g~~e~A~~v~erAi~~---~P~s--------------- 315 (770)
.++-|+.+..-++....++ .++...+|+.+...+++-.|...|++|+.. .+.+
T Consensus 35 LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~ 114 (167)
T 3ffl_A 35 LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQ 114 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------------
T ss_pred hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcc
Confidence 4566666666655443222 247888999999999999999999999764 2222
Q ss_pred -------HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 004187 316 -------EMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361 (770)
Q Consensus 316 -------~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~ 361 (770)
.++.+..+.|+.+.+++++|..+++.+-...- ...+.+.+++++
T Consensus 115 s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R--t~kvnm~LakLy 165 (167)
T 3ffl_A 115 SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR--TPKINMLLANLY 165 (167)
T ss_dssp --CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC--CHHHHHHHHHHC
T ss_pred cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc--CHHHHHHHHHHh
Confidence 25667777777777777777777665322221 345666665543
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.08 E-value=0.83 Score=41.12 Aligned_cols=82 Identities=15% Similarity=0.015 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 004187 269 FTYEQCLMYLYHYPDIWYDYATWNAKSGS---IDAAIKVFQRALKALPD-SEMLRYAFAELEESRGAIAAAKKLYESLLT 344 (770)
Q Consensus 269 ~~ye~aL~~~p~~~~~w~~~a~~l~~~g~---~e~A~~v~erAi~~~P~-s~~lw~~~a~~~~~~g~~e~A~~iye~al~ 344 (770)
..|++-+ ...-+++.-+.||..+.++.+ ..+++.+++..++..|. ..+.++.+|.-+.+.|+|++|+...+.+|+
T Consensus 28 ~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 28 QQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444433 334477899999999998875 45789999999999884 577888888888999999999999999999
Q ss_pred cCCCCcHH
Q 004187 345 DSVNTTAL 352 (770)
Q Consensus 345 ~~p~~~~~ 352 (770)
..|. +..
T Consensus 107 ~eP~-N~Q 113 (134)
T 3o48_A 107 HERN-NKQ 113 (134)
T ss_dssp TCTT-CHH
T ss_pred hCCC-CHH
Confidence 9998 433
No 237
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.79 E-value=3.3 Score=49.85 Aligned_cols=100 Identities=7% Similarity=-0.038 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHH
Q 004187 283 DIWYDYATWNAKSGSIDAAIKVFQRAL----KALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358 (770)
Q Consensus 283 ~~w~~~a~~l~~~g~~e~A~~v~erAi----~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~ 358 (770)
..+..+...+.+.|++++|.++|++.. +.+.-+...|..+..-+.+.|++++|.++|++.....-..+.-.|..++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 357788888999999999999997654 2456677789999999999999999999999998765443577888888
Q ss_pred HHHHHhcC-HHHHHHHHHHHHcCCC
Q 004187 359 RFLRRTEG-VEAARKYFLDARKSPN 382 (770)
Q Consensus 359 ~~~~r~~~-~e~A~~~f~~Al~~~~ 382 (770)
+.+.+.|+ .++|..+|+++.+.+-
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 88888887 5889999999988654
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.74 E-value=2.2 Score=38.85 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 279 YHYPDIWYDYATWNAKSGS---IDAAIKVFQRALKALPD-SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 279 p~~~~~w~~~a~~l~~~g~---~e~A~~v~erAi~~~P~-s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
.-+.+.-++||..+..+.+ ..+++.+++..+...|. ..+..+.+|.-+.+.|+|++|+...+.+|+..|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 5678999999999999875 55789999999999885 5666677788888999999999999999999997
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.47 E-value=4.6 Score=38.22 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=76.0
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 004187 327 ESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAH 406 (770)
Q Consensus 327 ~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~ 406 (770)
.+.|+++.|.++.+.+ + ....|..+++...++|+++-|..+|.++-. .. ...++|...|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l-----~-~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~----~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----N-DSITWERLIQEALAQGNASLAEMIYQTQHS-----FD----KLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HH----HHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----C-CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HH----HHHHHHHHhCCHHHHH
Confidence 4678888888876654 1 467888888888888999888888888643 11 1122344458887766
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 004187 407 NVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKV 478 (770)
Q Consensus 407 ~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~ 478 (770)
++-+.+....-.+..+ ..+..+|+.+++..+|.+.=. |..-+.|...+|..+.+..+
T Consensus 81 kla~iA~~~g~~n~af-----~~~l~lGdv~~~i~lL~~~~r----------~~eA~~~A~t~g~~~~a~~~ 137 (177)
T 3mkq_B 81 KMQNIAQTREDFGSML-----LNTFYNNSTKERSSIFAEGGS----------LPLAYAVAKANGDEAAASAF 137 (177)
T ss_dssp HHHHHHHHTTCHHHHH-----HHHHHHTCHHHHHHHHHHTTC----------HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCccHHHHH-----HHHHHcCCHHHHHHHHHHCCC----------hHHHHHHHHHcCcHHHHHHH
Confidence 6665555443222221 223457899988888865321 33334455567876555443
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.23 E-value=11 Score=40.67 Aligned_cols=168 Identities=9% Similarity=0.007 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcH--HHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCCCcHHHH-
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKAL---PDSE--MLRYAFAELEES-RGAIAAAKKLYESLLTDSVNTTALAH- 354 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~---P~s~--~lw~~~a~~~~~-~g~~e~A~~iye~al~~~p~~~~~~w- 354 (770)
..+.+.++.+|...|+.++..+++....... |+.. .+--.+.++... .+..+.-.++...+++..... -..|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE-KRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3556789999999999999888887665433 3222 222223333322 244455555555555432221 1122
Q ss_pred -----HHHHHHHHHhcCHHHHHHHHHHHHcC----CCC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---CCcH
Q 004187 355 -----IQFIRFLRRTEGVEAARKYFLDARKS----PNF--TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRF---MHEP 420 (770)
Q Consensus 355 -----~~~~~~~~r~~~~e~A~~~f~~Al~~----~~~--~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~---p~~~ 420 (770)
..++.++...|++.+|.+++.+.++. ++. ..++++.-..+.+.. ++..+++..|.++.+.. +.+|
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~-~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL-SNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhhccCCCCH
Confidence 36788888888888888888887752 111 234455555555554 88888888888887642 1222
Q ss_pred ----HHHHHHHHHHH-hcCChhHHHHHHHHHHhCCC
Q 004187 421 ----AYILEYADFLS-RLNDDRNIRALFERALSSLP 451 (770)
Q Consensus 421 ----~~~l~ya~~l~-~~g~~~~Ar~lferaL~~~p 451 (770)
.+...-+.++. ..+++..|...|=.+++.+.
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 34455566777 78888888888888876554
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.72 E-value=4.1 Score=47.74 Aligned_cols=162 Identities=12% Similarity=0.061 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~ 364 (770)
....+.++...|..++|.++.+ +....+ .+....|+++.|.++.+.. . ....|..+++.+...
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~~-----~-~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTDE-----S-AEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTTC-----C-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHhh-----C-cHhHHHHHHHHHHHc
Confidence 3677788888888888776653 222222 2345678999888875321 1 468999999999999
Q ss_pred cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 004187 365 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFE 444 (770)
Q Consensus 365 ~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lfe 444 (770)
++++.|..+|.++-. +.. +..+ +...++.+...++-+.+...- +.. ....++..+|++++|.++|.
T Consensus 695 ~~~~~A~~~y~~~~d-----~~~---l~~l-~~~~~~~~~~~~~~~~a~~~~-~~~----~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD-----LES---LFLL-HSSFNNKEGLVTLAKDAETTG-KFN----LAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp TCHHHHHHHHHHHTC-----HHH---HHHH-HHHTTCHHHHHHHHHHHHHTT-CHH----HHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC-----hhh---hHHH-HHHcCCHHHHHHHHHHHHHcC-chH----HHHHHHHHcCCHHHHHHHHH
Confidence 999999999998743 222 2222 222477776666555444422 211 11223445788888888876
Q ss_pred HHHhCCCchhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhcc
Q 004187 445 RALSSLPPEESIEVWKRFTQFEQMYGDLD-STLKVEQRRKEALS 487 (770)
Q Consensus 445 raL~~~p~~~~~~lw~~~~~fE~~~Gd~~-~~~k~~~R~~~~~~ 487 (770)
+.-. |..-+.+..++|..+ .+..+.++..+.+.
T Consensus 761 ~~~~----------~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~ 794 (814)
T 3mkq_A 761 KSQR----------FSEAAFLGSTYGLGDNEVNDIVTKWKENLI 794 (814)
T ss_dssp HTTC----------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCC----------hHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 5321 444444555566443 24445555544444
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.62 E-value=1.7 Score=39.02 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004187 369 AARKYFLDARKSPNFTYHVYVAYALMAFCQ--DKDPKLAHNVFEAGLKRFMH-EPAYILEYADFLSRLNDDRNIRALFER 445 (770)
Q Consensus 369 ~A~~~f~~Al~~~~~~~~~yi~~a~le~~~--~g~~~~A~~ife~alk~~p~-~~~~~l~ya~~l~~~g~~~~Ar~lfer 445 (770)
..++-|.+=. .+..+..+-.++|..+.+. ..+..+++.+++..++..|. ..+.++..+--+.++|++++|+...+.
T Consensus 25 ~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~ 103 (134)
T 3o48_A 25 ILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 103 (134)
T ss_dssp HHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444444322 2333456666655554442 12455778888888877764 456777777777788888888888888
Q ss_pred HHhCCCc
Q 004187 446 ALSSLPP 452 (770)
Q Consensus 446 aL~~~p~ 452 (770)
.|+.-|.
T Consensus 104 lL~~eP~ 110 (134)
T 3o48_A 104 LFEHERN 110 (134)
T ss_dssp HHTTCTT
T ss_pred HHhhCCC
Confidence 8888773
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.10 E-value=1.2 Score=52.08 Aligned_cols=53 Identities=9% Similarity=-0.031 Sum_probs=42.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 004187 392 ALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFER 445 (770)
Q Consensus 392 a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lfer 445 (770)
+.++.. .|+++-|.++-++++..-|.+-..|...+..|..+|++++|.-.++.
T Consensus 344 a~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 344 TNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 333344 38899999999999999999999999999999999999988866554
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.07 E-value=2.3 Score=43.06 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=53.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 004187 291 WNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVN 348 (770)
Q Consensus 291 ~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~ 348 (770)
-+.+.|++++|++..+..|+.+|.+..+...|..++.-.|++++|.+.++.+.+.+|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3567789999999999999999999999999999999999999999999999999887
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.93 E-value=1.3 Score=40.46 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcCChhHHHHHHH
Q 004187 368 EAARKYFLDARKSPNFTYHVYVAYALMAFCQ--DKDPKLAHNVFEAGLKRFMH-EPAYILEYADFLSRLNDDRNIRALFE 444 (770)
Q Consensus 368 e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~--~g~~~~A~~ife~alk~~p~-~~~~~l~ya~~l~~~g~~~~Ar~lfe 444 (770)
+..++-|.+-.. +..+.++-.++|..+.+. ..+..+++.+++..++..|. ..+..+..+--+.++|++++||.+.+
T Consensus 23 ~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 23 EILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp HHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444443322 233466666665555442 23455777888888877764 44566666667778888888888888
Q ss_pred HHHhCCCc
Q 004187 445 RALSSLPP 452 (770)
Q Consensus 445 raL~~~p~ 452 (770)
..|+.-|.
T Consensus 102 ~lL~~eP~ 109 (144)
T 1y8m_A 102 TLFEHERN 109 (144)
T ss_dssp HHHHTCCC
T ss_pred HHHhcCCC
Confidence 88887773
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.90 E-value=7.7 Score=36.69 Aligned_cols=108 Identities=17% Similarity=0.220 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHH
Q 004187 280 HYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIR 359 (770)
Q Consensus 280 ~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~ 359 (770)
.+++..+.+| .+.|+++.|.++.+.. ++...|-.+++.-...|+++-|..+|.++=.. -.+.-
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------~~L~~ 68 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF---------DKLSF 68 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------HHHHH
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------HHHHH
Confidence 3445555443 5778999998887654 77889999999999999999999999874321 12222
Q ss_pred HHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004187 360 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFE 410 (770)
Q Consensus 360 ~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife 410 (770)
++...|+.+...++-+.|...... ...+..+ . . .|+++++.++|.
T Consensus 69 Ly~~tg~~e~L~kla~iA~~~g~~-n~af~~~-l---~-lGdv~~~i~lL~ 113 (177)
T 3mkq_B 69 LYLVTGDVNKLSKMQNIAQTREDF-GSMLLNT-F---Y-NNSTKERSSIFA 113 (177)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCH-HHHHHHH-H---H-HTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHCccH-HHHHHHH-H---H-cCCHHHHHHHHH
Confidence 334468888888777777765542 1122221 1 2 389998888874
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.83 E-value=24 Score=37.88 Aligned_cols=190 Identities=11% Similarity=0.049 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHH------HHHHHHHHHhCcHHHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHHh
Q 004187 296 GSIDAAIKVFQRALKALPDSEMLR------YAFAELEESRGAIAAAKKLYESLLTDSVN-----TTALAHIQFIRFLRRT 364 (770)
Q Consensus 296 g~~e~A~~v~erAi~~~P~s~~lw------~~~a~~~~~~g~~e~A~~iye~al~~~p~-----~~~~~w~~~~~~~~r~ 364 (770)
+..+.-.+++..+++-.-.....| ..++.++...|++.+|.+++.++++.... ...+++..-++++...
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~ 152 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL 152 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence 344444555555555332222223 27899999999999999999988864332 1245667777888899
Q ss_pred cCHHHHHHHHHHHHcCC---CCCH--HH--HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--cHH--HHHHHHHHHHh-
Q 004187 365 EGVEAARKYFLDARKSP---NFTY--HV--YVAYALMAFCQDKDPKLAHNVFEAGLKRFMH--EPA--YILEYADFLSR- 432 (770)
Q Consensus 365 ~~~e~A~~~f~~Al~~~---~~~~--~~--yi~~a~le~~~~g~~~~A~~ife~alk~~p~--~~~--~~l~ya~~l~~- 432 (770)
+++..++..+.+|.... .+.+ .. ....|.+.....++++.|...|-.+++.|.. ++. -.+.|+-+..-
T Consensus 153 ~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl 232 (394)
T 3txn_A 153 SNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM 232 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 99999999999987532 1222 22 2223444440359999999999989887644 232 12233332222
Q ss_pred cCChhHHHHHHH-HHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 433 LNDDRNIRALFE-RALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 433 ~g~~~~Ar~lfe-raL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.++..+...++. .....+. ...-.|..-+......|++....+++......+.
T Consensus 233 ~~~r~el~~~l~~~~~~~~~--~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~ 286 (394)
T 3txn_A 233 LGQSDDVNQLVSGKLAITYS--GRDIDAMKSVAEASHKRSLADFQAALKEYKKELA 286 (394)
T ss_dssp TTCGGGHHHHHHSHHHHTTC--SHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTT
T ss_pred cCCHHHHHHHhccccccccC--CccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 234333333222 2111121 1222344444445577888877777665544443
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.43 E-value=3.1 Score=48.75 Aligned_cols=77 Identities=14% Similarity=0.060 Sum_probs=50.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHH
Q 004187 291 WNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAA 370 (770)
Q Consensus 291 ~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A 370 (770)
+....|++++|.++.+ ..++...|-.+|....+.++++.|..+|.++-.. -.+..++...++.+..
T Consensus 661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~---------~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDL---------ESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH---------HHHHHHHHHTTCHHHH
T ss_pred hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccCh---------hhhHHHHHHcCCHHHH
Confidence 3456788888887753 3467889999999999999999999999875221 1222233335566655
Q ss_pred HHHHHHHHcCC
Q 004187 371 RKYFLDARKSP 381 (770)
Q Consensus 371 ~~~f~~Al~~~ 381 (770)
..+-+.+...+
T Consensus 727 ~~~~~~a~~~~ 737 (814)
T 3mkq_A 727 VTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 55555555433
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=89.19 E-value=3 Score=50.17 Aligned_cols=97 Identities=10% Similarity=-0.082 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhc-----cCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC-CCHHHHH
Q 004187 316 EMLRYAFAELEESRGAIAAAKKLYESLLT-----DSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN-FTYHVYV 389 (770)
Q Consensus 316 ~~lw~~~a~~~~~~g~~e~A~~iye~al~-----~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~-~~~~~yi 389 (770)
...+..+.+.+.+.|++++|..+|++.-+ ..| +.-.|..+++.+.+.|++++|.++|+++.+.+- .+.-.|.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P--dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL--TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC--CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34567788889999999999999977543 244 478899999999999999999999999987642 2455666
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 004187 390 AYALMAFCQDKD-PKLAHNVFEAGLKR 415 (770)
Q Consensus 390 ~~a~le~~~~g~-~~~A~~ife~alk~ 415 (770)
.+...+.+. |+ .++|.++|+.+.+.
T Consensus 205 tLI~glcK~-G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 205 AALQCMGRQ-DQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHc
Confidence 655554454 65 57899999999987
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.77 E-value=1.1 Score=52.66 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~a 342 (770)
..+...-++|+...|+++-|+++.++|+...|....-|+.++.+|...|+++.|.-.++.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3467777999999999999999999999999999999999999999999999999877765
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.63 E-value=2.1 Score=40.04 Aligned_cols=61 Identities=16% Similarity=-0.034 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc------HHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 004187 285 WYDYATWNAKSGSIDAAIKVFQRALKA---LPDS------EMLRYAFAELEESRGAIAAAKKLYESLLTD 345 (770)
Q Consensus 285 w~~~a~~l~~~g~~e~A~~v~erAi~~---~P~s------~~lw~~~a~~~~~~g~~e~A~~iye~al~~ 345 (770)
.++..+.+...+.++.|+-+...++.. +|+. ..+.+.+|+.+...++|.+|...|+++|+.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 455566677778888888877776654 3442 234566788888999999999999998764
No 252
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.79 E-value=8.1 Score=42.93 Aligned_cols=192 Identities=11% Similarity=0.076 Sum_probs=84.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--h---------CCCcHHHHHHHHHHHHHhCcHHH----------HHHHHHHHh----
Q 004187 289 ATWNAKSGSIDAAIKVFQRALK--A---------LPDSEMLRYAFAELEESRGAIAA----------AKKLYESLL---- 343 (770)
Q Consensus 289 a~~l~~~g~~e~A~~v~erAi~--~---------~P~s~~lw~~~a~~~~~~g~~e~----------A~~iye~al---- 343 (770)
..++..++++++|.++-...+. . ++-+..+||-|..+++..|+... .|..+-.++
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3345556677776665554441 1 22346689988888888776543 333332222
Q ss_pred -ccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 004187 344 -TDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPN-FTY----HVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM 417 (770)
Q Consensus 344 -~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~-~~~----~~yi~~a~le~~~~g~~~~A~~ife~alk~~p 417 (770)
.++....+.+|..+.+.+...+.++.|..+..++.-... ... .-++..|.+... .+++.+|.+.+..++.+.|
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCS
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCC
Confidence 334443567888888999999999999999999853211 111 112223445444 4899999999999999876
Q ss_pred CcH-------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 418 HEP-------AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 418 ~~~-------~~~l~ya~~l~~~g~~~~Ar~lferaL~~~p~~~~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
.+. .++..++-+.+-+|+... |.+|.+ ..-.....-+..++.. .+.||+.....+.......|.
T Consensus 302 ~~~~a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~q----~~l~~~L~pY~~Lv~A-vr~GdL~~F~~~L~~h~~~F~ 372 (523)
T 4b4t_S 302 HNSKSLGFLQQSNKLHCCIQLLMGDIPE-LSFFHQ----SNMQKSLLPYYHLTKA-VKLGDLKKFTSTITKYKQLLL 372 (523)
T ss_dssp CSSSCSHHHHHHHHHHHHHHHHHTCCCC-HHHHTT----TSCHHHHHHHHHHHHH-HHHTCHHHHHHHHHHTHHHHH
T ss_pred cchhhhhHHHHHHHHHHhHHhhcCCCCC-hHHhhc----hhHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHhcceec
Confidence 531 122223333334576542 334431 0001111122222222 267999999999888888887
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.66 E-value=5 Score=43.16 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=79.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCH
Q 004187 294 KSGSIDAAIKVFQRALKALPDSE------MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGV 367 (770)
Q Consensus 294 ~~g~~e~A~~v~erAi~~~P~s~------~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~ 367 (770)
..|+.+.|...+++|+...-... .-|..-.. ...++.+ ..+...++..+.+.|++
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r--------~~l~~~~-----------~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFA--------TALVEDK-----------VLAHTAKAEAEIACGRA 187 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHH--------HHHHHHH-----------HHHHHHHHHHHHHTTCH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH--------HHHHHHH-----------HHHHHHHHHHHHHCCCH
Confidence 45778888888999988753221 11211000 1111122 12344556667778889
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC--ChhHHHHHHHH
Q 004187 368 EAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN--DDRNIRALFER 445 (770)
Q Consensus 368 e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g--~~~~Ar~lfer 445 (770)
.+|...+.+++...|....+|..+...++.. |+..+|.++|+++.+..-+ ++| --.+.+.++++
T Consensus 188 ~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~-Gr~~~Al~~y~~~r~~L~~-------------eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 188 SAVIAELEALTFEHPYREPLWTQLITAYYLS-DRQSDALGAYRRVKTTLAD-------------DLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH-------------HHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH-------------HhCCCCCHHHHHHHHH
Confidence 9999999888888887788888887777775 9999999999888776321 122 12445677777
Q ss_pred HHhCCC
Q 004187 446 ALSSLP 451 (770)
Q Consensus 446 aL~~~p 451 (770)
.+...+
T Consensus 254 il~~~~ 259 (388)
T 2ff4_A 254 ILRQQP 259 (388)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 776544
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.12 E-value=3.7 Score=44.16 Aligned_cols=54 Identities=17% Similarity=0.032 Sum_probs=26.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 004187 288 YATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341 (770)
Q Consensus 288 ~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~ 341 (770)
++..+...|+.++|+..+++++..+|-+..+|..++..+...|+..+|...|++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444455555555555555555555555555554544445554444444443
No 255
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=76.89 E-value=36 Score=30.81 Aligned_cols=117 Identities=15% Similarity=0.047 Sum_probs=73.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-----------HHH---------hCcHHHHHHHHHHHhccCCCCcH
Q 004187 292 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAEL-----------EES---------RGAIAAAKKLYESLLTDSVNTTA 351 (770)
Q Consensus 292 l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~-----------~~~---------~g~~e~A~~iye~al~~~p~~~~ 351 (770)
+...|..++..++.++.++..+-+..-|+.--.+ +.. .|+......+|-+.=. . .
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~---~--s 91 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT---L--N 91 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC---C--C
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc---h--H
Confidence 4456888889999999888888777767632111 111 1223333333322111 1 1
Q ss_pred HHHHHH-HHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 004187 352 LAHIQF-IRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415 (770)
Q Consensus 352 ~~w~~~-~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~ 415 (770)
. |+.+ .+....+|..+...+++...+......+...+..|..+-+. |+..+|.++..++.++
T Consensus 92 e-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Kl-g~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 E-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRV-GDERDATTLLIEACKK 154 (172)
T ss_dssp H-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHh-cchhhHHHHHHHHHHh
Confidence 1 2222 34556678888888888888777766788888888876665 8888888888888765
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.59 E-value=4.8 Score=43.91 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCcHHHHHHHHHHHhccC---CCCc--HHH
Q 004187 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDS---EMLRYAFAELEESRGAIAAAKKLYESLLTDS---VNTT--ALA 353 (770)
Q Consensus 282 ~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s---~~lw~~~a~~~~~~g~~e~A~~iye~al~~~---p~~~--~~~ 353 (770)
..++..+|.++.+.|++++|.++|.++...+..+ .++++....+....+++..+...++++-... ++.. ..+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3578899999999999999999999998876533 5777888888888899999998888875432 2111 122
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHcC
Q 004187 354 HIQFIRFLRRTEGVEAARKYFLDARKS 380 (770)
Q Consensus 354 w~~~~~~~~r~~~~e~A~~~f~~Al~~ 380 (770)
....+.++...+++..|-..|-.+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 233334444556777777777666543
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.29 E-value=15 Score=40.04 Aligned_cols=102 Identities=11% Similarity=0.061 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC--CCCCHHH----
Q 004187 316 EMLRYAFAELEESRGAIAAAKKLYESLLTDSVN--TTALAHIQFIRFLRRTEGVEAARKYFLDARKS--PNFTYHV---- 387 (770)
Q Consensus 316 ~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~--~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~--~~~~~~~---- 387 (770)
..++..+|.++.+.|+++.|.++|.++...+.. ...+++...++.+...+++..+...++++... ...++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 346778999999999999999999988765432 25678888888888899999999999988632 1222222
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 004187 388 YVAYALMAFCQDKDPKLAHNVFEAGLKRFMH 418 (770)
Q Consensus 388 yi~~a~le~~~~g~~~~A~~ife~alk~~p~ 418 (770)
....+.+... .+++..|...|-.++..+..
T Consensus 211 k~~~gl~~l~-~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 211 KTYYGIHCLA-VRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHGGGG-TSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH-hChHHHHHHHHHHHhccCCc
Confidence 2222333333 48899998888888776543
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.96 E-value=1.1e+02 Score=37.73 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=15.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004187 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRA 308 (770)
Q Consensus 278 ~p~~~~~w~~~a~~l~~~g~~e~A~~v~erA 308 (770)
++.++-.-|..|.++...|++++|...|++|
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444455555555555555555555544
No 259
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.78 E-value=37 Score=30.66 Aligned_cols=83 Identities=13% Similarity=-0.042 Sum_probs=59.2
Q ss_pred cchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHH
Q 004187 260 TASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLY 339 (770)
Q Consensus 260 ~~~~~~r~~~~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iy 339 (770)
..+..+|++..|-. ...+.+.--.....+...|+-++--+++...+...+-++.+.+.+|..|.+.|+..+|.+++
T Consensus 73 ~C~NlKrVi~C~~~----~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 73 KCQNLKSVVECGVI----NNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp GCSCTHHHHHHHHH----TTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcHHHHHHHHHH----hcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 34456777665533 33444555555567778888888888887777777788888888899999999888888888
Q ss_pred HHHhccC
Q 004187 340 ESLLTDS 346 (770)
Q Consensus 340 e~al~~~ 346 (770)
.+|.+..
T Consensus 149 ~~AC~kG 155 (172)
T 1wy6_A 149 IEACKKG 155 (172)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 8887754
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.36 E-value=29 Score=35.07 Aligned_cols=118 Identities=11% Similarity=0.052 Sum_probs=68.4
Q ss_pred HHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHH
Q 004187 361 LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIR 440 (770)
Q Consensus 361 ~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar 440 (770)
..+.+++++|+...+..++..|.+...-..+.++++- .|++++|.+-++.+.+.+|+.......|-.... -+..|
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~----aE~~R 81 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVK----AAQAR 81 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH----HHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH----HHHHH
Confidence 3456788888888888888877777777777776555 488888888888888888876544333322110 01122
Q ss_pred HHHHHHHh--CCC--chhHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhcc
Q 004187 441 ALFERALS--SLP--PEESIEVWKRFTQF---EQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 441 ~lferaL~--~~p--~~~~~~lw~~~~~f---E~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
+.++. ..| ...... |...+.- ....|+.+.+...-.++.+.-|
T Consensus 82 ---~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 82 ---KDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp ---HHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred ---HHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 22222 111 011112 3322221 2245888888887777777765
No 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=61.75 E-value=46 Score=36.88 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 004187 286 YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 360 (770)
Q Consensus 286 ~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~ 360 (770)
..++++..-....+.|+..|.+|+..+|++...+..+|.+....|+.-+|.-.|-|++..... ...++-.+..+
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P-f~~a~~nL~~~ 229 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC-ChhHHHHHHHH
Confidence 344555544556788999999999999999999999999998888888888888888876544 45666555443
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.16 E-value=54 Score=36.34 Aligned_cols=151 Identities=11% Similarity=0.060 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHhc--c----CCC----CcHHHHHHHHHHHHHhcCHHH----------HHHHHHHHHc
Q 004187 320 YAFAELEESRGAIAAAKKLYESLLT--D----SVN----TTALAHIQFIRFLRRTEGVEA----------ARKYFLDARK 379 (770)
Q Consensus 320 ~~~a~~~~~~g~~e~A~~iye~al~--~----~p~----~~~~~w~~~~~~~~r~~~~e~----------A~~~f~~Al~ 379 (770)
+....++...+++++|.++-..++. . +.. -.+.+|+.|..++...+.... .|..+-.++.
T Consensus 140 lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~r 219 (523)
T 4b4t_S 140 LLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLK 219 (523)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Confidence 3333445566777777765544431 1 110 135688888887766665433 3444433332
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 004187 380 -----SPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE-------PAYILEYADFLSRLNDDRNIRALFERAL 447 (770)
Q Consensus 380 -----~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p~~-------~~~~l~ya~~l~~~g~~~~Ar~lferaL 447 (770)
.+.....+.+++..=.|-..+.++.|.++..++. ||.. ..+.+..+.+..-++++.+|...|..|+
T Consensus 220 ta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 220 IASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1222233333332212223488999999988874 6542 2345556788888999999999999999
Q ss_pred hCCCchh-----HHHHHHHHHHHHHHcCCH
Q 004187 448 SSLPPEE-----SIEVWKRFTQFEQMYGDL 472 (770)
Q Consensus 448 ~~~p~~~-----~~~lw~~~~~fE~~~Gd~ 472 (770)
...|+.. ...+...++-.+.-.|+.
T Consensus 298 rkap~~~~a~gfr~~a~K~lI~V~LLlG~i 327 (523)
T 4b4t_S 298 RKAPHNSKSLGFLQQSNKLHCCIQLLMGDI 327 (523)
T ss_dssp SSCSCSSSCSHHHHHHHHHHHHHHHHHTCC
T ss_pred HhCCcchhhhhHHHHHHHHHHhHHhhcCCC
Confidence 9887432 234444455555555664
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.98 E-value=1.9e+02 Score=29.66 Aligned_cols=32 Identities=6% Similarity=-0.191 Sum_probs=19.1
Q ss_pred CcHHHHHHH-HHHHHhcCChhHHHHHHHHHHhC
Q 004187 418 HEPAYILEY-ADFLSRLNDDRNIRALFERALSS 449 (770)
Q Consensus 418 ~~~~~~l~y-a~~l~~~g~~~~Ar~lferaL~~ 449 (770)
...+++... +--+.-.++...|..+|+..++.
T Consensus 185 ~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344554433 33445668888888887766543
No 264
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=53.05 E-value=3.6 Score=35.28 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.7
Q ss_pred CCCchhHHHHHHHHhhhcc
Q 004187 729 QPQPRDFFRIRQMKKARGA 747 (770)
Q Consensus 729 ~~~~~d~~~~r~~~~~~~~ 747 (770)
.-...||.+.|.++++|..
T Consensus 33 ~~AS~eVLs~RkIkkaKRr 51 (114)
T 3tj3_C 33 SMASEEVLKNRAIKKAKRR 51 (114)
T ss_dssp CBCCHHHHHHSCCCCCCCC
T ss_pred ccCCHHHHhcccccccccc
Confidence 4556999999999999854
No 265
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=47.93 E-value=52 Score=30.43 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhCCCc---HHHHHHHHH------HHHhcCCHHHHHHHHHHHHhhc
Q 004187 24 ETAEILANSALHLPVAQAAPIYEQLLSVFPTA---AKFWKQYVE------AYMAVNNDDATKQLFSRCLLIC 86 (770)
Q Consensus 24 ~aw~~l~~~~~~~~i~~Ar~~ye~~l~~fP~~---~~~W~~yi~------~e~~~~~~~~a~~ifeRaL~~~ 86 (770)
.+|...+.....+.+=+|..++|.+-...+.. -.+|.-+|+ ...+.||...|..+|.+++...
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 56777777777788888999999998876543 568888888 3346789999999999997753
No 266
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=47.07 E-value=70 Score=35.36 Aligned_cols=75 Identities=7% Similarity=-0.053 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004187 319 RYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALM 394 (770)
Q Consensus 319 w~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~~~~~~~yi~~a~l 394 (770)
...+|++..-...++.|+..|.+|+...|. ....|.+++-+....++.-.|.-.|-|++-.......+..++..+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 345677777777789999999999999998 788999999999999999999999999998766667776666544
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.50 E-value=1.5e+02 Score=36.39 Aligned_cols=138 Identities=9% Similarity=-0.072 Sum_probs=73.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHHH
Q 004187 290 TWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEA 369 (770)
Q Consensus 290 ~~l~~~g~~e~A~~v~erAi~~~P~s~~lw~~~a~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e~ 369 (770)
..+...+.++-+++ .+.-+|.+....|..|.++...|++++|..+|+++-.-........ .....
T Consensus 820 ~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-----------~~~~~ 884 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-----------AVLRE 884 (1139)
T ss_dssp HHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-----------SSHHH
T ss_pred HHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-----------hhhcc
Confidence 33444444444433 2345666666666777777777788888777777643211100000 00000
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-CcH----HHHHHHHHHHHhcCChhHHHHHHH
Q 004187 370 ARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFM-HEP----AYILEYADFLSRLNDDRNIRALFE 444 (770)
Q Consensus 370 A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g~~~~A~~ife~alk~~p-~~~----~~~l~ya~~l~~~g~~~~Ar~lfe 444 (770)
...+ .............|.+.+.+... .+-++.+.+.-+.+++.-+ ++. .+|.....+....|++++|-..+-
T Consensus 885 ~~~~-~~~~~~~~~l~~YY~hv~~LFe~-~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 885 FQEI-AEKYHHQNLLSCYYLHLSKKLFE-ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHH-HHTTTSCCSSHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred cccc-cccccccccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 0000 00000112224455555544333 4788888888888887643 332 367777788888888888866553
No 268
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=44.15 E-value=41 Score=27.77 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHH--------------HHHHHHHHhCCCchhHHHHHHHHHH
Q 004187 402 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNI--------------RALFERALSSLPPEESIEVWKRFTQ 464 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~A--------------r~lferaL~~~p~~~~~~lw~~~~~ 464 (770)
++.|.....+.-..|.++|+.+..+.+++......... -.+++++-..+. ++.+|...|..
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~--~h~DLl~~F~~ 84 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFK--NQEDLLSEFGQ 84 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTT--TCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHc--cCHHHHHHHHH
Confidence 45677767676677878888877777776654322111 366666666655 55666655543
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.45 E-value=3.6e+02 Score=28.92 Aligned_cols=96 Identities=6% Similarity=0.046 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHcCC--CC----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh---CCCcH--
Q 004187 352 LAHIQFIRFLRRTEGVEAARKYFLDARKSP--NF----TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR---FMHEP-- 420 (770)
Q Consensus 352 ~~w~~~~~~~~r~~~~e~A~~~f~~Al~~~--~~----~~~~yi~~a~le~~~~g~~~~A~~ife~alk~---~p~~~-- 420 (770)
.+...++.++...|++.+|..++....... .. ...+++.-+.+.... +|+.+|..++.++..+ .+..+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~-~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILK-GDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 344555666666666666666666554211 00 123344444443343 6666666666665322 12222
Q ss_pred --HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 421 --AYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 421 --~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
.++...+.++...+++.+|-..|-.++.
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2344455555566666666666655554
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=38.09 E-value=4.8e+02 Score=29.41 Aligned_cols=177 Identities=12% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------------HHHhCCCcHHHHHHH-------------H
Q 004187 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQR-------------ALKALPDSEMLRYAF-------------A 323 (770)
Q Consensus 270 ~ye~aL~~~p~~~~~w~~~a~~l~~~g~~e~A~~v~er-------------Ai~~~P~s~~lw~~~-------------a 323 (770)
+|.......-..++....-+......|+...|..+... ++...|.+..-.... +
T Consensus 142 l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 142 LFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVA 221 (618)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHH
Q ss_pred HHHHHhCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhcCHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004187 324 ELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVE---AARKYFLDARKSPNFTYHVYVAYALMAFCQDK 400 (770)
Q Consensus 324 ~~~~~~g~~e~A~~iye~al~~~p~~~~~~w~~~~~~~~r~~~~e---~A~~~f~~Al~~~~~~~~~yi~~a~le~~~~g 400 (770)
.-.....+.+.|...|.+............|.....+..+.-... ++...+.+....... ..+.--.+.+.... |
T Consensus 222 ~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~-~ 299 (618)
T 1qsa_A 222 FASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGT-G 299 (618)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHH-T
T ss_pred HHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHC-C
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004187 401 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS 448 (770)
Q Consensus 401 ~~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~~~Ar~lferaL~ 448 (770)
+.+.|...|+++-......+...+=.+..+..+|+.++|+.+|+++.+
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
No 271
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.17 E-value=1.4e+02 Score=27.50 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=29.3
Q ss_pred HhCcHHHHHHHHHHHhccCCCC--cHHHHHHHHH------HHHHhcCHHHHHHHHHHHHc
Q 004187 328 SRGAIAAAKKLYESLLTDSVNT--TALAHIQFIR------FLRRTEGVEAARKYFLDARK 379 (770)
Q Consensus 328 ~~g~~e~A~~iye~al~~~p~~--~~~~w~~~~~------~~~r~~~~e~A~~~f~~Al~ 379 (770)
..|+|=+|+++++.+-...+.. ...+|..+++ +..+.|+.+.|+.+|.+++.
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477778888888777665432 2233333333 33445666666666666654
No 272
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=34.42 E-value=81 Score=24.98 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 004187 286 YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR 319 (770)
Q Consensus 286 ~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw 319 (770)
...++.+...|+.++|...|-+|+..||+-..+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4567888889999999999999999999887764
No 273
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=28.59 E-value=92 Score=24.66 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCh
Q 004187 60 KQYVEAYMAVNNDDATKQLFSRCLLICLQV 89 (770)
Q Consensus 60 ~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~ 89 (770)
...++.....|+++++...|-+|+..||++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 467788888999999999999999999975
No 274
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=27.80 E-value=1.1e+02 Score=24.79 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc--CCh---------hHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 004187 402 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRL--NDD---------RNIRALFERALSSLPPEESIEVWKRFTQF 465 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~--g~~---------~~Ar~lferaL~~~p~~~~~~lw~~~~~f 465 (770)
++.|.....+.-..|.++|+.+..+.+++... +.. -....+++++-..+. ++.+|...|..|
T Consensus 7 ~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~--~hpDLl~~F~~F 79 (85)
T 1e91_A 7 FNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFR--GQEDLLSEFGQF 79 (85)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTS--SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHc--cCHHHHHHHHHH
Confidence 45677777777777777888777777666532 111 123457777766665 566666666544
No 275
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=27.05 E-value=1.4e+02 Score=23.74 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCchhHHHHHHHH
Q 004187 402 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN-DDRNIRALFERALSSLPPEESIEVWKRF 462 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g-~~~~Ar~lferaL~~~p~~~~~~lw~~~ 462 (770)
.+.|.....+.-..+.+++..+..+.+.+.... .--....+++++-..+. .+.+|...|
T Consensus 4 ~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~--~hpdLi~gF 63 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH--EHPDLIVGF 63 (77)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc--CCHHHHHHH
Confidence 445566666655666666666666665554332 11223455555555444 444444443
No 276
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.61 E-value=2.4e+02 Score=27.32 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=48.9
Q ss_pred ChhhHHHHHHHHHHhCCCcHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHH
Q 004187 37 PVAQAAPIYEQLLSVFPTAAKF--------WKQYVEAYMAVNNDDATKQLFSRCLLICLQV-PLWRCYIRFIRK 101 (770)
Q Consensus 37 ~i~~Ar~~ye~~l~~fP~~~~~--------W~~yi~~e~~~~~~~~a~~ifeRaL~~~p~~-~lW~~y~~~~~~ 101 (770)
+++.|..+++.+-.-++-...+ -.+-+-.|++.|.|++|..+|+|.....++. .+-...+..+++
T Consensus 87 PLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 87 PLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 4678999999999888765443 2244567889999999999999999887654 466666666655
No 277
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=23.89 E-value=1.5e+02 Score=25.21 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCh-----------hHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 004187 402 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD-----------RNIRALFERALSSLPPEESIEVWKRFTQF 465 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g~~-----------~~Ar~lferaL~~~p~~~~~~lw~~~~~f 465 (770)
++.|.....+.-..|.+++++|..+.+++.....- .....+++++-..+. .+.+|...|..|
T Consensus 7 ~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~--~hpDLl~eFn~F 79 (105)
T 2f05_A 7 FNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFR--GQEDLLSEFGQF 79 (105)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHc--cCHHHHHHHHHH
Confidence 45667777777777777888777777665432110 012356666666554 556666555554
No 278
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=23.11 E-value=88 Score=25.15 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 004187 402 PKLAHNVFEAGLKRFMHEPAYILEYADFLSRLN-DDRNIRALFERALSSLPPEESIEVWKRFTQF 465 (770)
Q Consensus 402 ~~~A~~ife~alk~~p~~~~~~l~ya~~l~~~g-~~~~Ar~lferaL~~~p~~~~~~lw~~~~~f 465 (770)
.+.|.....+.-..|.+++..+..+.+++.... .--....+++++-..+. .+.+|...|-.|
T Consensus 10 ~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~--~hpdLi~gFn~F 72 (80)
T 2cr7_A 10 VEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH--EHPDLIVGFNAF 72 (80)
T ss_dssp SCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGG--GCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 445666666666667777777777776665432 12234466666666554 555666555444
No 279
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=21.44 E-value=1.1e+02 Score=25.45 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 004187 286 YDYATWNAKSGSIDAAIKVFQRALKALPDSEMLR 319 (770)
Q Consensus 286 ~~~a~~l~~~g~~e~A~~v~erAi~~~P~s~~lw 319 (770)
...++.+...|+++.|...|-+|+..||.-..+.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4568888889999999999999999999877764
No 280
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.30 E-value=7.6e+02 Score=26.27 Aligned_cols=101 Identities=10% Similarity=0.005 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCC-----cHHHHHHHHHHHHhcCChhHHHHHHHHHHh----C-CCchh
Q 004187 386 HVYVAYALMAFCQDKDPKLAHNVFEAGLKR-FMH-----EPAYILEYADFLSRLNDDRNIRALFERALS----S-LPPEE 454 (770)
Q Consensus 386 ~~yi~~a~le~~~~g~~~~A~~ife~alk~-~p~-----~~~~~l~ya~~l~~~g~~~~Ar~lferaL~----~-~p~~~ 454 (770)
.+...+|.+.... |++.+|.+++...... +.. ..++++.-++++...+++.+|+.++.++.. . .+++-
T Consensus 138 rl~~~La~i~e~~-g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 138 RVTKDLVEIKKEE-GKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 4556677776665 9999999999887653 322 246888889999999999999999998753 2 22233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 004187 455 SIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALS 487 (770)
Q Consensus 455 ~~~lw~~~~~fE~~~Gd~~~~~k~~~R~~~~~~ 487 (770)
...+..-.+.+....+++..+-+.+..+.+.+.
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 345555556666666888877777777776654
No 281
>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C
Probab=21.12 E-value=41 Score=24.67 Aligned_cols=22 Identities=5% Similarity=0.141 Sum_probs=18.0
Q ss_pred cCCCchhHHHHHHHHhhhccCC
Q 004187 728 SQPQPRDFFRIRQMKKARGAAS 749 (770)
Q Consensus 728 ~~~~~~d~~~~r~~~~~~~~~~ 749 (770)
......||..-|-++++|...+
T Consensus 28 ~~~AS~eVl~~RkI~k~krr~~ 49 (51)
T 1un0_C 28 TKVASSAVMNRRKIAMPKRRMA 49 (51)
T ss_pred cccCCHHHHhcCcccccccccc
Confidence 3567899999999999997643
No 282
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=20.64 E-value=32 Score=20.78 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=7.3
Q ss_pred hhhhhhcccCCCCCcc
Q 004187 707 DKQSLKRKDIGQDDDE 722 (770)
Q Consensus 707 ~~~~~~r~~~~~~~~~ 722 (770)
.+++.|||..=+|+||
T Consensus 4 rrrrrkrkrewddddd 19 (28)
T 3ukx_C 4 RRRRRKRKREWDDDDD 19 (28)
T ss_dssp --CCCCCCCCCCCSSS
T ss_pred hHHHHHhhcccccCCC
Confidence 4455566654444444
Done!