Citrus Sinensis ID: 004187

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770

MASSSVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSALNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGKSPTTYPTPIPTGAARSASGISGSNKSHPTPSGSSLKQSKDKQSLKRKDIGQDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSASYGSAVSGDLSGSTG

cccccccccHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccc

**************TGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEA***************LQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKK***********************************SQMVIY******************************VATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIP***********************************************************************RDFFR*********************************

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Cleavage stimulation factor subunit 3	One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs.	probable	Q12996
Protein suppressor of forked	Essential protein, may play a role in mRNA production or stability.	probable	P25991
Cleavage stimulation factor subunit 3	One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs.	probable	Q5RDW9

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2UY1, chain A
Confidence level:very confident
Coverage over the Query: 39-54,70-222,240-520
View the alignment between query and template
View the model in PyMOL

Template: 2OOE, chain A
Confidence level:very confident
Coverage over the Query: 10-527
View the alignment between query and template
View the model in PyMOL