BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004188
(770 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
pdb|3EGD|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 764
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/781 (42%), Positives = 473/781 (60%), Gaps = 50/781 (6%)
Query: 7 EAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICSK--CGAVLN 64
E +G+R+SWN WPS++ +A +++P++ L TPL + ++P + Y+P++CS+ C AVLN
Sbjct: 12 EERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLN 71
Query: 65 PYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHD-HLPNTL 123
P +VDY +++W C FCY +N FP SY+ I+E N PAEL P +SS+EY +P
Sbjct: 72 PLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIF 131
Query: 124 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGCMEESEIRAVKHELLRVMEQLPENALV 183
D CME+ +++A+K + + LP ALV
Sbjct: 132 LYVV---------------------------DTCMEDEDLQALKESMQMSLSLLPPTALV 164
Query: 184 GLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQHQLGKTPVIQK-- 241
GL+ F MV VH+LG + VF G ++LS++Q+Q ++G+ Q + P +Q+
Sbjct: 165 GLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPLTQATRGPQVQQPP 224
Query: 242 --QGFLLPVSECEFNVTTAIEEINSLTQRTP-----GHRPQRCTGAAISAAVGLLEGCSV 294
FL PV + + N+T + E+ QR P G RP R +G A+S AVGLLE
Sbjct: 225 PSNRFLQPVQKIDMNLTDLLGEL----QRDPWPVPQGKRPLRSSGVALSIAVGLLECTFP 280
Query: 295 NTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIK 354
NTG+RIM+F GPAT GPG++V E IR+ D+ +A Y +K ++ L++R
Sbjct: 281 NTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAAT 340
Query: 355 SSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESDQFRKCMRHIFGHDEEGNLKM 414
+ V+D++AC+LDQ G+ E+K +GG++++G++F + F++ + +F D G KM
Sbjct: 341 TGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKM 400
Query: 415 YFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKLNTLASKTCIAFF 474
F T+E+ T+R+IKI GA+GPCVSL K VS++E G GGT WK+ L+ T +A +
Sbjct: 401 GFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIY 460
Query: 475 FQVSDEQKAQ--PGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQSP--EIAAGFDQE 530
F+V ++ A G IQF+T+Y+H + R RVTT AR W Q+ IAA FDQE
Sbjct: 461 FEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQE 520
Query: 531 XXXXXXXXXXXXXXETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQF 590
ET DV+RWLD LIR KFG+Y +DPSSFR S FSLYPQF
Sbjct: 521 AAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQF 580
Query: 591 MFYLRRSQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDVR 650
MF+LRRS F+ VFN +PDE++++R R+ + SLIMIQP L+ YSF GPP PVLLD
Sbjct: 581 MFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSS 640
Query: 651 SISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPETDAEQLVAERI 710
SI D ILL D++F ++I++G IAQW+K GY P +EN R LL+AP DA++++ R
Sbjct: 641 SILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRF 700
Query: 711 PAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYKEGSDV---IFTDDLSLEVFIDHLQTLA 767
P P+ I + GSQARFLL+K+NPS T ++MY G + I TDD+SL+VF+DHL+ LA
Sbjct: 701 PMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLA 760
Query: 768 V 768
V
Sbjct: 761 V 761
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 769
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/781 (42%), Positives = 473/781 (60%), Gaps = 50/781 (6%)
Query: 7 EAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICSK--CGAVLN 64
E +G+R+SWN WPS++ +A +++P++ L TPL + ++P + Y+P++CS+ C AVLN
Sbjct: 16 EERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLN 75
Query: 65 PYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHD-HLPNTL 123
P +VDY +++W C FCY +N FP SY+ I+E N PAEL P +SS+EY +P
Sbjct: 76 PLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIF 135
Query: 124 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGCMEESEIRAVKHELLRVMEQLPENALV 183
D CME+ +++A+K + + LP ALV
Sbjct: 136 LYVV---------------------------DTCMEDEDLQALKESMQMSLSLLPPTALV 168
Query: 184 GLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQHQLGKTPVIQK-- 241
GL+ F MV VH+LG + VF G ++LS++Q+Q ++G+ Q + P +Q+
Sbjct: 169 GLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPP 228
Query: 242 --QGFLLPVSECEFNVTTAIEEINSLTQRTP-----GHRPQRCTGAAISAAVGLLEGCSV 294
FL PV + + N+T + E+ QR P G RP R +G A+S AVGLLE
Sbjct: 229 PSNRFLQPVQKIDMNLTDLLGEL----QRDPWPVPQGKRPLRSSGVALSIAVGLLECTFP 284
Query: 295 NTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIK 354
NTG+RIM+F GPAT GPG++V E IR+ D+ +A Y +K ++ L++R
Sbjct: 285 NTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAAT 344
Query: 355 SSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESDQFRKCMRHIFGHDEEGNLKM 414
+ V+D++AC+LDQ G+ E+K +GG++++G++F + F++ + +F D G KM
Sbjct: 345 TGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKM 404
Query: 415 YFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKLNTLASKTCIAFF 474
F T+E+ T+R+IKI GA+GPCVSL K VS++E G GGT WK+ L+ T +A +
Sbjct: 405 GFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIY 464
Query: 475 FQVSDEQKAQ--PGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQSP--EIAAGFDQE 530
F+V ++ A G IQF+T+Y+H + R RVTT AR W Q+ IAA FDQE
Sbjct: 465 FEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQE 524
Query: 531 XXXXXXXXXXXXXXETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQF 590
ET DV+RWLD LIR KFG+Y +DPSSFR S FSLYPQF
Sbjct: 525 AAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQF 584
Query: 591 MFYLRRSQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDVR 650
MF+LRRS F+ VFN +PDE++++R R+ + SLIMIQP L+ YSF GPP PVLLD
Sbjct: 585 MFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSS 644
Query: 651 SISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPETDAEQLVAERI 710
SI D ILL D++F ++I++G IAQW+K GY P +EN R LL+AP DA++++ R
Sbjct: 645 SILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRF 704
Query: 711 PAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYKEGSDV---IFTDDLSLEVFIDHLQTLA 767
P P+ I + GSQARFLL+K+NPS T ++MY G + I TDD+SL+VF+DHL+ LA
Sbjct: 705 PMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLA 764
Query: 768 V 768
V
Sbjct: 765 V 765
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
Length = 765
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/781 (42%), Positives = 472/781 (60%), Gaps = 50/781 (6%)
Query: 7 EAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICSK--CGAVLN 64
E +G+R+SWN WPS++ +A +++P++ L TPL + ++P + Y+P++CS+ C AVLN
Sbjct: 12 EERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLN 71
Query: 65 PYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHD-HLPNTL 123
P +VDY +++W C FCY +N FP SY+ I+E N PAEL P +SS+EY +P
Sbjct: 72 PLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIF 131
Query: 124 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGCMEESEIRAVKHELLRVMEQLPENALV 183
D CME+ +++A+K + + LP ALV
Sbjct: 132 LYVV---------------------------DTCMEDEDLQALKESMQMSLSLLPPTALV 164
Query: 184 GLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQHQLGKTPVIQK-- 241
GL+ F MV VH+LG + VF G +LS++Q+Q ++G+ Q + P +Q+
Sbjct: 165 GLITFGRMVQVHELGCEGISKSYVFRGTGDLSAKQLQEMLGLSKVPLTQATRGPQVQQPP 224
Query: 242 --QGFLLPVSECEFNVTTAIEEINSLTQRTP-----GHRPQRCTGAAISAAVGLLEGCSV 294
FL PV + + N+T + E+ QR P G RP R +G A+S AVGLLE
Sbjct: 225 PSNRFLQPVQKIDMNLTDLLGEL----QRDPWPVPQGKRPLRSSGVALSIAVGLLECTFP 280
Query: 295 NTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIK 354
NTG+RIM+F GPAT GPG++V E IR+ D+ +A Y +K ++ L++R
Sbjct: 281 NTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAAT 340
Query: 355 SSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESDQFRKCMRHIFGHDEEGNLKM 414
+ V+D++AC+LDQ G+ E+K +GG++++G++F + F++ + +F D G KM
Sbjct: 341 TGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKM 400
Query: 415 YFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKLNTLASKTCIAFF 474
F T+E+ T+R+IKI GA+GPCVSL K VS++E G GGT WK+ L+ T +A +
Sbjct: 401 GFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIY 460
Query: 475 FQVSDEQKAQ--PGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQSP--EIAAGFDQE 530
F+V ++ A G IQF+T+Y+H + R RVTT AR W Q+ IAA FDQE
Sbjct: 461 FEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQE 520
Query: 531 XXXXXXXXXXXXXXETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQF 590
ET DV+RWLD LIR KFG+Y +DPSSFR S FSLYPQF
Sbjct: 521 AAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQF 580
Query: 591 MFYLRRSQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDVR 650
MF+LRRS F+ VFN +PDE++++R R+ + SLIMIQP L+ YSF GPP PVLLD
Sbjct: 581 MFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSS 640
Query: 651 SISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPETDAEQLVAERI 710
SI D ILL D++F ++I++G IAQW+K GY P +EN R LL+AP DA++++ R
Sbjct: 641 SILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRF 700
Query: 711 PAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYKEGSDV---IFTDDLSLEVFIDHLQTLA 767
P P+ I + GSQARFLL+K+NPS T ++MY G + I TDD+SL+VF+DHL+ LA
Sbjct: 701 PMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLA 760
Query: 768 V 768
V
Sbjct: 761 V 761
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 588 bits (1515), Expect = e-168, Method: Compositional matrix adjust.
Identities = 306/794 (38%), Positives = 461/794 (58%), Gaps = 52/794 (6%)
Query: 1 MDFTELEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICS--K 58
MDF E I G+R++WN +PST+SDA S ++P+ L+TPL + E+ V PY+P++CS
Sbjct: 1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPH 60
Query: 59 CGAVLNPYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHDH 118
C ++LNPY +D + W+CP C +N P Y+++++ N+P EL T ++EY +
Sbjct: 61 CKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLELQST--TIEYIT---N 115
Query: 119 LPNTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGCMEESEIRAVKHELLRVMEQLP 178
P T+ D E + ++K ++ + LP
Sbjct: 116 KPVTVPPIFFFVV-----------------------DLTSETENLDSLKESIITSLSLLP 152
Query: 179 ENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLM------GIRCAKQH- 231
NAL+GL+ + ++V +HDL R VF G RE E + ++ G A H
Sbjct: 153 PNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHL 212
Query: 232 --QLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTP-GHRPQRCTGAAISAAVGL 288
+ K F LP+ + EF + +E ++ P GHRP R TG+A++ A L
Sbjct: 213 PNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLL 272
Query: 289 LEGCSVNTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQL 348
L+GC N +RI++F SGP T+ PG+IV++E +R+H D+ + HA +Y+K+C FY Q+
Sbjct: 273 LQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQI 332
Query: 349 SDRLIKSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESDQFRKCMRHIFGHDE 408
+ R+ + +D+FA DQ+G++E+K + +GG +++ + F + F++ +F DE
Sbjct: 333 AQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDE 392
Query: 409 EGNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKN-NLVSDSETGEGGTYMWKLNTLAS 467
EG LKM F+ + V T++D+K+ G +G ++KK + N +S+SE G G T WK+ +L+
Sbjct: 393 EGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSP 452
Query: 468 KTCIAFFFQV------SDEQKAQPGSA-----FFIQFITRYRHGNMNIRKRVTTAARRWV 516
A FF++ S+ + PGSA + QFIT Y+H + R RVTT A + +
Sbjct: 453 YHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLL 512
Query: 517 GKQSPEIAAGFDQEXXXXXXXXXXXXXXETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPS 576
+P IAA FDQE ET DV+RWLD TLI+ K+ DY +DP
Sbjct: 513 PFGTPAIAASFDQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQ 572
Query: 577 SFRLSSNFSLYPQFMFYLRRSQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQY 636
SFRL+ NFSLYPQF +YLRRSQF+ VFN +PDETAF+R + RE SLIMIQPTL +
Sbjct: 573 SFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSF 632
Query: 637 SFDGPPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLE 696
S + P PVLLD S+ P+ ILL D++F ++I++G +IAQW+K GY DP + + + LLE
Sbjct: 633 SMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLE 692
Query: 697 APETDAEQLVAERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYKEGSDVIFTDDLSL 756
P+ +A +L+ +R P P+ I + GSQARFLL+KLNPS M + GS ++ TDD+SL
Sbjct: 693 EPKLEAAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSL 752
Query: 757 EVFIDHLQTLAVQG 770
+ F+ HLQ +AV G
Sbjct: 753 QNFMTHLQQVAVSG 766
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 585 bits (1508), Expect = e-167, Method: Compositional matrix adjust.
Identities = 305/793 (38%), Positives = 460/793 (58%), Gaps = 52/793 (6%)
Query: 2 DFTELEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICS--KC 59
DF E I G+R++WN +PST+SDA S ++P+ L+TPL + E+ V PY+P++CS C
Sbjct: 6 DFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHC 65
Query: 60 GAVLNPYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHDHL 119
++LNPY +D + W+CP C +N P Y+++++ N+P EL T ++EY +
Sbjct: 66 KSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLELQST--TIEYIT---NK 120
Query: 120 PNTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGCMEESEIRAVKHELLRVMEQLPE 179
P T+ D E + ++K ++ + LP
Sbjct: 121 PVTVPPIFFFVV-----------------------DLTSETENLDSLKESIITSLSLLPP 157
Query: 180 NALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLM------GIRCAKQH-- 231
NAL+GL+ + ++V +HDL R VF G RE E + ++ G A H
Sbjct: 158 NALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLP 217
Query: 232 -QLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTP-GHRPQRCTGAAISAAVGLL 289
+ K F LP+ + EF + +E ++ P GHRP R TG+A++ A LL
Sbjct: 218 NAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLL 277
Query: 290 EGCSVNTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLS 349
+GC N +RI++F SGP T+ PG+IV++E +R+H D+ + HA +Y+K+C FY Q++
Sbjct: 278 QGCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIA 337
Query: 350 DRLIKSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESDQFRKCMRHIFGHDEE 409
R+ + +D+FA DQ+G++E+K + +GG +++ + F + F++ +F DEE
Sbjct: 338 QRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEE 397
Query: 410 GNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKN-NLVSDSETGEGGTYMWKLNTLASK 468
G LKM F+ + V T++D+K+ G +G ++KK + N +S+SE G G T WK+ +L+
Sbjct: 398 GYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPY 457
Query: 469 TCIAFFFQV------SDEQKAQPGSA-----FFIQFITRYRHGNMNIRKRVTTAARRWVG 517
A FF++ S+ + PGSA + QFIT Y+H + R RVTT A + +
Sbjct: 458 HSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLP 517
Query: 518 KQSPEIAAGFDQEXXXXXXXXXXXXXXETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPSS 577
+P IAA FDQE ET DV+RWLD TLI+ K+ DY +DP S
Sbjct: 518 FGTPAIAASFDQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQS 577
Query: 578 FRLSSNFSLYPQFMFYLRRSQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQYS 637
FRL+ NFSLYPQF +YLRRSQF+ VFN +PDETAF+R + RE SLIMIQPTL +S
Sbjct: 578 FRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFS 637
Query: 638 FDGPPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEA 697
+ P PVLLD S+ P+ ILL D++F ++I++G +IAQW+K GY DP + + + LLE
Sbjct: 638 MEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEE 697
Query: 698 PETDAEQLVAERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYKEGSDVIFTDDLSLE 757
P+ +A +L+ +R P P+ I + GSQARFLL+KLNPS M + GS ++ TDD+SL+
Sbjct: 698 PKLEAAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQ 757
Query: 758 VFIDHLQTLAVQG 770
F+ HLQ +AV G
Sbjct: 758 NFMTHLQQVAVSG 770
>pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a
Length = 59
Score = 65.9 bits (159), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 52 DPLICSK--CGAVLNPYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLPA 101
+P++CS+ C AVLNP +VDY +++W C FCY +N FP SY+ I+E N PA
Sbjct: 8 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59
>pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a
Mutant V69a
Length = 59
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 52 DPLICSK--CGAVLNPYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLPA 101
+P++CS+ C A LNP +VDY +++W C FCY +N FP SY+ I+E N PA
Sbjct: 8 EPVLCSRTTCRAALNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 122/650 (18%), Positives = 232/650 (35%), Gaps = 108/650 (16%)
Query: 10 EGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLI-CSKCGAVLNPY-G 67
+ R + + P T++ +PL LL P +++PV+ + ++ C C +NP+
Sbjct: 41 DSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRSCRTYINPFVS 100
Query: 68 RVDYASRIWTCPFCYGKNPFPRSY------SSIAETNLPAELFPTYSSVEYAAAHDHLPN 121
+D R W C CY N P + S E + E+ S+VE+ A+ D++
Sbjct: 101 FID--QRRWKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEV--QNSTVEFIASSDYM-- 154
Query: 122 TLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGCMEESEIRAVKHELLRVMEQLPENA 181
+E + + LL +++LP ++
Sbjct: 155 -----------------LRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDS 197
Query: 182 --LVGLVVFDSMVYVHDL--GFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQHQLGKTP 237
+G + FDS ++ ++L G S+ ++V L+ + +K+
Sbjct: 198 RTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKE------- 250
Query: 238 VIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTG 297
+I+ LP N+ T E +S G A+ AA L+ TG
Sbjct: 251 LIKDLLNALP------NMFTNTRETHS------------ALGPALQAAFKLMSP----TG 288
Query: 298 SRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSI 357
R+ VF + ++G G++ E R+ V+ P + FYK+L+
Sbjct: 289 GRVSVFQTQLPSLGAGLLQSREDPNQ-RSSTKVVQHLGP----ATDFYKKLALDCSGQQT 343
Query: 358 VLDLFACSLDQVGVAELKVPVEKSGGFIMIGETF-------ESDQFRKCMRHIFGHDEEG 410
+DLF S +A L + S G I +F ++++ +K ++
Sbjct: 344 AVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTR---- 399
Query: 411 NLKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKLNTLASKTC 470
K+ F+A + + T+ + + T G ++ + L+
Sbjct: 400 --KIGFEAVMRIRCTKGLSM--------------------HTFHGNFFVRSTDLLSLANI 437
Query: 471 ---IAFFFQVSDEQKAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQSPEIAAGF 527
F Q+S E+ S Q Y R RV T V + ++ AG
Sbjct: 438 NPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLA-DVYAGV 496
Query: 528 DQEXXXXXXXXXXXXXXETCYSRDVVRWLDDTLIRFTSKFGDYVPE-DPSSFRLSSNFSL 586
D + + D L + ++ S +G V S+ S+ L
Sbjct: 497 DVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKL 556
Query: 587 YPQFMFYLRRSQFIDVFNCTP-DETAFFRLMLNREGVVGSLIMIQPTLFQ 635
+P ++ L + + T D+ + + + +V + MI P L++
Sbjct: 557 FPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLYR 606
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 90/441 (20%), Positives = 154/441 (34%), Gaps = 85/441 (19%)
Query: 10 EGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLI-CSKCGAVLNPYGR 68
E R + S P T++ +PL LL P ++PV+ ++ C C +NP+
Sbjct: 44 ELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYINPFVS 103
Query: 69 VDYASRIWTCPFCYGKNPFPRSYSSIAETNLPAELFP----TYSSVEYAAAHDHLPNTLX 124
R W C CY N P + T + E +++E+ A +++
Sbjct: 104 F-LDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYM----- 157
Query: 125 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGCMEESEIRAVKHELLRVMEQLPENAL-- 182
+E + +V LL ++ LP N
Sbjct: 158 --------------LRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTK 203
Query: 183 VGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQHQLGKTPVIQKQ 242
+G + FDS ++ F+G +E S Q Q L+ V +
Sbjct: 204 IGFITFDSTIH--------------FYGLQE-SLSQPQMLI--------------VSDIE 234
Query: 243 GFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCT---------GAAISAAVGLLEGCS 293
+P+ E N+ + E L Q PQ T G A+ AA L+
Sbjct: 235 DVFIPMPE---NLLVNLNESKELVQDLLKTLPQMFTKTLETQSALGPALQAAFKLMSP-- 289
Query: 294 VNTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLI 353
TG R+ VF + T+G G + E + D+ + S FYK+L+
Sbjct: 290 --TGGRMSVFQTQLPTLGVGALKPREEPNHRSSAKDI------HMTPSTDFYKKLALDCS 341
Query: 354 KSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESD----QFRKCMRHIFGHDEE 409
+ +DLF S +A L S G + ++ Q +K + + +
Sbjct: 342 GQQVAVDLFLLSGQYSDLASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQKELQRYLTR 401
Query: 410 GNLKMYFDATIEVVTTRDIKI 430
K+ F+A + + T+ + I
Sbjct: 402 ---KIGFEAVMRIRCTKGLSI 419
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 90/441 (20%), Positives = 154/441 (34%), Gaps = 85/441 (19%)
Query: 10 EGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLI-CSKCGAVLNPYGR 68
E R + S P T++ +PL LL P ++PV+ ++ C C +NP+
Sbjct: 39 ELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYINPFVS 98
Query: 69 VDYASRIWTCPFCYGKNPFPRSYSSIAETNLPAELFP----TYSSVEYAAAHDHLPNTLX 124
R W C CY N P + T + E +++E+ A +++
Sbjct: 99 F-LDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYM----- 152
Query: 125 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGCMEESEIRAVKHELLRVMEQLPENAL-- 182
+E + +V LL ++ LP N
Sbjct: 153 --------------LRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTK 198
Query: 183 VGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQHQLGKTPVIQKQ 242
+G + FDS ++ F+G +E S Q Q L+ V +
Sbjct: 199 IGFITFDSTIH--------------FYGLQE-SLSQPQMLI--------------VSDIE 229
Query: 243 GFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCT---------GAAISAAVGLLEGCS 293
+P+ E N+ + E L Q PQ T G A+ AA L+
Sbjct: 230 DVFIPMPE---NLLVNLNESKELVQDLLKTLPQMFTKTLETQSALGPALQAAFKLMSP-- 284
Query: 294 VNTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLI 353
TG R+ VF + T+G G + E + D+ + S FYK+L+
Sbjct: 285 --TGGRMSVFQTQLPTLGVGALKPREEPNHRSSAKDI------HMTPSTDFYKKLALDCS 336
Query: 354 KSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFESD----QFRKCMRHIFGHDEE 409
+ +DLF S +A L S G + ++ Q +K + + +
Sbjct: 337 GQQVAVDLFLLSGQYSDLASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQKELQRYLTR 396
Query: 410 GNLKMYFDATIEVVTTRDIKI 430
K+ F+A + + T+ + I
Sbjct: 397 ---KIGFEAVMRIRCTKGLSI 414
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 90/440 (20%), Positives = 160/440 (36%), Gaps = 61/440 (13%)
Query: 12 LRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPY-------DPLICSKCGAVLN 64
+R + + P T A +PL+ + PL + PY PL C++C A +
Sbjct: 46 IRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMC 105
Query: 65 PYGRVDYASRIWTCPFCYGKNPF-PRSYSSIAETNLPAELFP----TYSSVEYAAAHDHL 119
P+ + R + C FC N P+ + + T + + + S E+ A D+
Sbjct: 106 PFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYC 165
Query: 120 PNTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGCMEESEIRAVKHELLRVMEQLPE 179
N + +R + EL +++ LP
Sbjct: 166 KNNKFPSPPAFIFMIDVSY-----------------NAIRTGLVRLLCEELKSLLDFLPR 208
Query: 180 NALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQHQLGKTPVI 239
+S + V GF +VL F+ + S Q Q ++ A P++
Sbjct: 209 EGGAE----ESAIRV---GFVTYNKVLHFYNVKS-SLAQPQMMVVSDVADMF----VPLL 256
Query: 240 QKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTGSR 299
GFL+ V+E +T+ +++I + T + I A + L+ G
Sbjct: 257 D--GFLVNVNESRAVITSLLDQIPEMFADT--RETETVFVPVIQAGMEALKAAEC-AGKL 311
Query: 300 IMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVL 359
+ TS P PG + + + K I + ++ Y+ L+ + +
Sbjct: 312 FLFHTSLPIAEAPGKLKNRDDRKLINT-----DKEKTLFQPQTGAYQTLAKECVAQGCCV 366
Query: 360 DLFACSLDQVGVAELKVPVEKSGGFIMIGETF--ESDQFRKCMRHIFGHDEEGNLK--MY 415
DLF V VA L V + +GG + +F E+DQ R F D +++ +
Sbjct: 367 DLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQER------FLSDLRRDVQKVVG 420
Query: 416 FDATIEVVTTRDIKICGALG 435
FDA + V T+ I+ G
Sbjct: 421 FDAVMRVRTSTGIRAVDFFG 440
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 12 LRWSWNSWPSTKSDAVSLIIPLSLLHTP---LMQSSEIPVLPYDPLI--CSKCGAVLNPY 66
+R + N+ P S +P L+ P L + P L D LI C +C + +NP+
Sbjct: 66 IRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPF 125
Query: 67 GRVDYASRIWTCPFCYGKNPFP 88
R W C FC N P
Sbjct: 126 VTFIEQGRRWRCNFCRLANDVP 147
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 12 LRWSWNSWPSTKSDAVSLIIPLSLLHTP---LMQSSEIPVLPYDPLI--CSKCGAVLNPY 66
+R + N+ P S +P L+ P L + P L D LI C +C + +NP+
Sbjct: 182 IRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPF 241
Query: 67 GRVDYASRIWTCPFCYGKNPFP 88
R W C FC N P
Sbjct: 242 VTFIEQGRRWRCNFCRLANDVP 263
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
Length = 770
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 12 LRWSWNSWPSTKSDAVSLIIPLSLLHTPL--MQSSEIPVLPYD-----PLICSKCGAVLN 64
+R + +P T A IPL+ + P + S+E P+ + P+ C++C A +
Sbjct: 50 IRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMC 109
Query: 65 PYGRVDYASRIWTCPFCYGKNPFPRSY 91
P+ + R + C FC N P Y
Sbjct: 110 PFMQFIEGGRRYQCGFCNCVNDVPPFY 136
>pdb|1FBA|A Chain A, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
pdb|1FBA|B Chain B, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
pdb|1FBA|C Chain C, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
pdb|1FBA|D Chain D, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
Length = 361
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 595 RRSQFIDVFNCTPDETAFFRLMLNR-----EGVVGSLIMIQPTLFQYSFDGPPVPVLLDV 649
+R Q I V N + A+ +L+ + E + G +I+ TL+Q + DG P +L
Sbjct: 42 KRLQDIGVENTEDNRRAYRQLLFSTDPKLAENISG-VILFHETLYQKADDGTPFAEILKK 100
Query: 650 RSI------SPDVILLFDSYFHVVIH----YGSKIAQWKKHGYD 683
+ I V+ LF S V ++ AQ+KK G D
Sbjct: 101 KGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCD 144
>pdb|2O5N|A Chain A, Crystal Structure Of A Viral Glycoprotein
pdb|2O5N|B Chain B, Crystal Structure Of A Viral Glycoprotein
Length = 319
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 432 GALGPCVSLKKKNNLVSDSETGEGGTYMWKLNTLASKTCIAFFFQ 476
GA G +SLK ++VS G+ GTY W S I F Q
Sbjct: 32 GATGERISLKNTLSIVSXENGGKPGTYEWSFPANESWPEIQFLLQ 76
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 379 EKSGGFIMIGETFESDQFRKCMRHIFGH----DEEGNLKMYFDATIEVVTTRDIKICG 432
E++G +I + F R+ ++ I+ H + N+K FDA +++ ++K CG
Sbjct: 299 EEAGNYIKV--QFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCG 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,254,042
Number of Sequences: 62578
Number of extensions: 890797
Number of successful extensions: 1808
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1764
Number of HSP's gapped (non-prelim): 28
length of query: 770
length of database: 14,973,337
effective HSP length: 106
effective length of query: 664
effective length of database: 8,340,069
effective search space: 5537805816
effective search space used: 5537805816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)