Query 004188
Match_columns 770
No_of_seqs 188 out of 750
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 17:05:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nut_A Protein transport prote 100.0 2E-161 5E-166 1429.3 70.4 738 1-770 6-767 (769)
2 1m2o_A SEC23, protein transpor 100.0 7E-162 3E-166 1433.7 66.9 736 1-770 1-766 (768)
3 3eh1_A Protein transport prote 100.0 9E-139 3E-143 1226.3 66.5 663 6-769 37-751 (751)
4 3efo_B SEC24 related gene fami 100.0 5E-137 2E-141 1216.3 61.1 666 6-769 44-767 (770)
5 3eh2_A Protein transport prote 100.0 2E-136 8E-141 1210.1 62.7 666 6-769 40-763 (766)
6 1m2v_B SEC24, protein transpor 100.0 5E-134 2E-138 1201.3 59.4 666 6-769 176-926 (926)
7 1pcx_A Protein transport prote 100.0 2E-133 5E-138 1194.1 62.2 667 5-769 59-810 (810)
8 2yrc_A Protein transport prote 99.6 7E-17 2.4E-21 125.6 1.7 52 49-100 5-58 (59)
9 4fx5_A VON willebrand factor t 99.2 3.3E-08 1.1E-12 111.0 34.4 313 146-559 76-408 (464)
10 3ibs_A Conserved hypothetical 98.8 3.3E-07 1.1E-11 92.0 19.8 170 145-402 9-211 (218)
11 2b2x_A Integrin alpha-1; compu 98.3 1.6E-05 5.5E-10 80.1 16.3 164 145-393 20-199 (223)
12 1v7p_C Integrin alpha-2; snake 98.3 2.6E-05 8.9E-10 77.1 17.1 163 146-393 5-183 (200)
13 4b4t_W RPN10, 26S proteasome r 98.2 3.6E-06 1.2E-10 86.7 10.9 147 149-383 5-163 (268)
14 1q0p_A Complement factor B; VO 98.2 1.8E-05 6.2E-10 79.3 15.8 174 145-392 13-206 (223)
15 2x31_A Magnesium-chelatase 60 98.2 6E-07 2.1E-11 88.1 3.9 177 145-401 3-184 (189)
16 1ijb_A VON willebrand factor; 98.2 3.8E-05 1.3E-09 76.1 17.1 164 146-393 12-183 (202)
17 1shu_X Anthrax toxin receptor 98.2 0.00014 4.9E-09 70.2 20.5 159 146-391 5-167 (182)
18 1pt6_A Integrin alpha-1; cell 98.2 2.3E-05 8E-10 78.2 15.0 164 145-393 5-184 (213)
19 2odp_A Complement C2; C3/C5 co 98.1 2.3E-05 8E-10 89.1 15.9 183 145-405 7-211 (509)
20 1atz_A VON willebrand factor; 98.1 7.2E-05 2.5E-09 73.1 16.9 159 146-393 4-172 (189)
21 3n2n_F Anthrax toxin receptor 98.1 9.8E-05 3.4E-09 71.6 16.6 159 145-390 5-168 (185)
22 1n3y_A Integrin alpha-X; alpha 98.1 3.4E-05 1.2E-09 75.9 13.3 163 146-393 8-181 (198)
23 1rrk_A Complement factor B; BB 98.0 6.2E-05 2.1E-09 85.3 16.7 188 148-405 2-203 (497)
24 4hqf_A Thrombospondin-related 98.0 7.7E-05 2.6E-09 78.0 14.9 165 146-393 20-197 (281)
25 4hqo_A Sporozoite surface prot 98.0 0.00026 8.9E-09 73.3 18.2 175 146-405 17-204 (266)
26 1mf7_A Integrin alpha M; cell 97.9 3.8E-05 1.3E-09 75.4 10.4 163 146-393 4-177 (194)
27 1mjn_A Integrin alpha-L; rossm 97.8 0.0002 6.9E-09 69.4 14.1 154 147-393 2-167 (179)
28 2x5n_A SPRPN10, 26S proteasome 97.8 0.00015 5.2E-09 71.2 13.2 144 149-381 4-159 (192)
29 3hrz_D Complement factor B; se 97.8 6.3E-05 2.2E-09 89.6 11.3 178 147-392 243-434 (741)
30 3zqk_A VON willebrand factor; 97.7 0.00061 2.1E-08 67.1 14.3 50 145-194 19-73 (199)
31 1kcq_A Gelsolin, brevin, ADF, 97.6 0.00012 4.2E-09 64.3 8.1 84 630-729 2-88 (104)
32 2xgg_A Microneme protein 2; A/ 97.5 0.0014 4.7E-08 63.3 14.9 144 146-374 16-168 (178)
33 1jey_B KU80; double-strand DNA 97.1 0.00098 3.4E-08 76.6 9.9 146 148-366 8-169 (565)
34 1svq_A Severin; actin-binding; 97.0 0.00082 2.8E-08 60.0 5.9 84 630-729 12-99 (114)
35 3k6s_A Integrin alpha-X; cell 97.0 0.0015 5E-08 80.7 10.1 162 147-393 130-302 (1095)
36 3fcs_B Integrin beta-3; beta p 96.5 0.057 1.9E-06 62.9 17.5 213 145-389 109-334 (690)
37 3t3p_B Integrin beta-3; integr 96.3 0.23 7.9E-06 54.6 20.5 197 145-372 109-318 (472)
38 2fh1_A Gelsolin; calcium, cont 96.0 0.0048 1.7E-07 66.2 5.3 47 629-675 227-278 (344)
39 1j72_A Macrophage capping prot 96.0 0.0077 2.6E-07 64.7 6.6 80 629-724 246-336 (347)
40 3fg7_A Villin-1; actin binding 95.8 0.008 2.7E-07 65.6 5.9 47 629-675 281-331 (398)
41 3vi3_B Integrin beta-1; beta p 95.8 0.33 1.1E-05 53.0 18.4 195 145-372 120-325 (454)
42 3v4v_B Integrin beta-7; cell a 95.5 0.67 2.3E-05 51.2 19.6 196 145-373 130-338 (503)
43 3fg6_A Adseverin, scinderin; C 95.5 0.008 2.7E-07 65.0 4.2 47 629-675 268-319 (371)
44 2ww8_A RRGA, cell WALL surface 95.0 0.075 2.6E-06 63.8 11.0 156 145-312 222-394 (893)
45 1j72_A Macrophage capping prot 94.9 0.051 1.7E-06 58.3 8.2 86 630-732 135-223 (347)
46 1jey_A KU70; double-strand DNA 94.3 0.38 1.3E-05 55.4 14.4 69 274-367 139-208 (609)
47 1d0n_A Horse plasma gelsolin; 94.2 0.03 1E-06 66.1 4.8 49 627-675 610-663 (729)
48 2iue_A Pactolus I-domain; memb 93.2 0.9 3.1E-05 44.7 12.6 44 148-191 4-51 (212)
49 1d0n_A Horse plasma gelsolin; 92.9 0.16 5.4E-06 59.9 8.0 84 630-729 133-219 (729)
50 3rag_A Uncharacterized protein 92.8 0.13 4.4E-06 51.6 5.9 46 146-191 133-182 (242)
51 3k6s_B Integrin beta-2; cell r 91.0 0.47 1.6E-05 55.1 8.7 209 145-389 102-324 (687)
52 1yvr_A RO autoantigen, 60-kDa 90.9 0.88 3E-05 51.6 10.9 104 145-311 366-475 (538)
53 2fh1_A Gelsolin; calcium, cont 90.2 0.31 1.1E-05 52.0 6.0 46 630-675 124-173 (344)
54 3fg6_A Adseverin, scinderin; C 89.0 0.55 1.9E-05 50.6 6.7 46 630-675 165-215 (371)
55 3fg7_A Villin-1; actin binding 82.3 0.26 9E-06 53.6 0.0 46 630-675 178-227 (398)
56 2nvo_A RO sixty-related protei 76.3 4.6 0.00016 45.6 7.8 44 257-311 428-471 (535)
57 2a20_A Regulating synaptic mem 76.0 0.7 2.4E-05 34.9 0.6 28 52-83 32-59 (62)
58 2j9u_B VPS36, vacuolar protein 76.0 0.6 2E-05 37.3 0.2 20 73-92 15-34 (76)
59 2gmg_A Hypothetical protein PF 70.5 1.1 3.9E-05 38.3 0.7 35 52-91 66-100 (105)
60 1gh9_A 8.3 kDa protein (gene M 66.8 2.5 8.5E-05 33.7 1.9 30 52-87 3-32 (71)
61 1pft_A TFIIB, PFTFIIBN; N-term 61.3 12 0.00041 27.3 4.7 29 53-84 5-33 (50)
62 1vq8_Z 50S ribosomal protein L 60.3 5.2 0.00018 32.9 2.7 30 53-86 27-56 (83)
63 3rag_A Uncharacterized protein 51.0 24 0.00082 35.1 6.3 44 347-390 29-76 (242)
64 6rxn_A Rubredoxin; electron tr 48.9 3.6 0.00012 29.8 -0.0 9 75-83 30-38 (46)
65 4gat_A Nitrogen regulatory pro 47.9 6.3 0.00022 30.9 1.2 33 51-84 7-39 (66)
66 1s24_A Rubredoxin 2; electron 45.7 4.5 0.00015 33.5 0.1 32 53-84 35-77 (87)
67 2vut_I AREA, nitrogen regulato 44.4 5.5 0.00019 28.4 0.3 30 53-83 1-30 (43)
68 1yk4_A Rubredoxin, RD; electro 40.3 5.7 0.00019 29.6 -0.1 9 75-83 35-43 (52)
69 1yuz_A Nigerythrin; rubrythrin 38.9 8.9 0.0003 37.2 1.0 25 53-84 171-195 (202)
70 2csz_A Synaptotagmin-like prot 38.5 10 0.00035 30.5 1.1 31 54-84 43-73 (76)
71 3j20_Y 30S ribosomal protein S 37.2 18 0.00062 26.6 2.2 25 54-84 20-46 (50)
72 1dx8_A Rubredoxin; electron tr 36.9 7.6 0.00026 30.8 0.1 10 75-84 7-16 (70)
73 4rxn_A Rubredoxin; electron tr 36.7 7.6 0.00026 29.1 0.1 9 75-83 36-44 (54)
74 3j21_g 50S ribosomal protein L 36.5 11 0.00038 27.8 0.9 27 52-86 13-39 (51)
75 1e8j_A Rubredoxin; iron-sulfur 35.4 6.9 0.00024 29.1 -0.3 11 75-85 3-13 (52)
76 1x0t_A Ribonuclease P protein 35.2 10 0.00036 33.5 0.7 35 54-88 66-107 (120)
77 2kn9_A Rubredoxin; metalloprot 34.2 7.9 0.00027 31.6 -0.2 8 76-83 61-68 (81)
78 2v3b_B Rubredoxin 2, rubredoxi 32.8 9 0.00031 28.9 -0.1 10 75-84 3-12 (55)
79 2apo_B Ribosome biogenesis pro 32.2 24 0.00081 27.0 2.2 34 52-95 5-40 (60)
80 2zet_C Melanophilin; complex, 30.1 11 0.00037 34.9 -0.0 32 54-85 86-118 (153)
81 1gnf_A Transcription factor GA 29.8 7.9 0.00027 28.0 -0.8 31 53-84 4-34 (46)
82 2kdx_A HYPA, hydrogenase/ureas 28.7 19 0.00064 31.6 1.3 28 53-86 73-101 (119)
83 1zbd_B Rabphilin-3A; G protein 28.6 20 0.00069 32.2 1.5 33 54-86 73-109 (134)
84 2avu_E Flagellar transcription 28.4 17 0.00057 34.9 0.9 27 53-82 134-161 (192)
85 1wii_A Hypothetical UPF0222 pr 25.8 15 0.00051 30.3 0.1 15 74-88 22-36 (85)
86 1w7p_D VPS36P, YLR417W; ESCRT- 25.6 15 0.0005 41.4 0.0 20 73-92 115-134 (566)
87 2k3r_A Ribonuclease P protein 24.2 17 0.00059 32.2 0.2 35 54-88 61-102 (123)
88 2lk0_A RNA-binding protein 5; 23.6 20 0.00067 23.7 0.3 14 74-87 4-17 (32)
89 2akl_A PHNA-like protein PA012 23.0 41 0.0014 29.8 2.3 29 52-85 26-54 (138)
90 4hc9_A Trans-acting T-cell-spe 22.6 18 0.00062 31.6 0.0 30 53-83 5-34 (115)
91 1zso_A Hypothetical protein; s 22.0 24 0.00081 33.0 0.7 34 54-87 38-82 (164)
92 2c6a_A Ubiquitin-protein ligas 21.8 34 0.0012 24.5 1.3 19 74-92 12-30 (46)
93 4gzn_C ZFP-57, zinc finger pro 20.9 24 0.00082 26.7 0.4 34 53-86 4-43 (60)
94 2cr8_A MDM4 protein; ZF-ranbp 20.7 35 0.0012 24.9 1.2 19 74-92 10-28 (53)
95 1b3t_A Protein (nuclear protei 20.6 2.7E+02 0.0093 24.3 6.9 30 163-192 112-144 (147)
96 1nj3_A NPL4; NZF domain, rubre 20.4 31 0.001 22.3 0.8 16 73-88 4-19 (31)
97 2js4_A UPF0434 protein BB2007; 20.1 95 0.0033 24.4 3.7 32 52-87 7-38 (70)
98 4ayb_P DNA-directed RNA polyme 20.1 21 0.00073 25.7 -0.1 9 76-84 24-32 (48)
No 1
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=1.6e-161 Score=1429.26 Aligned_cols=738 Identities=45% Similarity=0.835 Sum_probs=673.4
Q ss_pred CCcc----cccCCCeeeeeccccCCCHhhhhhcCCCeeEEEccCCCCCCCCCCCCCCccCCC--CCeeEcCceEEecCCC
Q 004188 1 MDFT----ELEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICSK--CGAVLNPYGRVDYASR 74 (770)
Q Consensus 1 ~~~~----~~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~ip~~~~~p~RC~~--C~ayiNp~~~~~~~~~ 74 (770)
|||. +||+|+|||+|||+||.|++++++++||||++|+||++.+++|+++++|+||++ |+|||||||+|+.+|+
T Consensus 6 ~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~ 85 (769)
T 2nut_A 6 TTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAK 85 (769)
T ss_dssp -CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEETTTT
T ss_pred cchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCCCCCcCCCCCCcCCCCCCCeEECCceEEeCCCC
Confidence 5665 479999999999999999999999999999999999988889999999999999 9999999999999999
Q ss_pred eEEecCCCCCCCCCcCCCCCCCCCCCccccCCCceEEEEecCCCCCCCCCCccccccccccccCCCCCCCCCCcEEEEEE
Q 004188 75 IWTCPFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHDHLPNTLGSAKSFSSMASFSSVSSGGGGVLGPAFVFVV 154 (770)
Q Consensus 75 ~w~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vFvI 154 (770)
+|+||||+..|++|++|.++++.++||||.|+++||||++|++| +.||+|+|||
T Consensus 86 ~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~--------------------------p~pp~~vFvI 139 (769)
T 2nut_A 86 LWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP--------------------------QMPLIFLYVV 139 (769)
T ss_dssp EEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSC--------------------------CCCCEEEEEE
T ss_pred EEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCC--------------------------CCCCEEEEEE
Confidence 99999999999999999888888899999666999999999854 6789999999
Q ss_pred ecCcchhHHHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhhhccccc------
Q 004188 155 DGCMEESEIRAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCA------ 228 (770)
Q Consensus 155 D~s~~~~~l~~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~l~v~d~------ 228 (770)
|+|.+++++++++++|+++|+.||++++|||||||+.||||++++..+++++||+|+++++.+|+++|++++|.
T Consensus 140 DvS~~a~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~ 219 (769)
T 2nut_A 140 DTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQAT 219 (769)
T ss_dssp ECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC----------
T ss_pred ECCccHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888752
Q ss_pred ---ccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCC-CCCCCCcchHHHHHHHHHHhhcccCCCCcEEEEEe
Q 004188 229 ---KQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRT-PGHRPQRCTGAAISAAVGLLEGCSVNTGSRIMVFT 304 (770)
Q Consensus 229 ---~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~-~~~~~~~~~G~Al~~A~~ll~~~~~~~gGkI~~F~ 304 (770)
+++ |+.+.++||+|++||++.|+++|++|++..|++ .++++.||+|+||++|..+|+.+.++.||||++|+
T Consensus 220 ~~~~~~-----f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~ 294 (769)
T 2nut_A 220 RGPQVQ-----QPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFI 294 (769)
T ss_dssp --------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEE
T ss_pred cccccc-----CCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEe
Confidence 444 522348999999999999999999999976655 67899999999999999999976678999999999
Q ss_pred cCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccccCccee
Q 004188 305 SGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEKSGGF 384 (770)
Q Consensus 305 sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~~TGG~ 384 (770)
+|+||.|||+|+.+++++++|+|+|++|+++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.
T Consensus 295 sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~ 374 (769)
T 2nut_A 295 GGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGY 374 (769)
T ss_dssp SSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCC
T ss_pred CCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCce
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCChhHHHHHHHHHhccCcccccceeeeEEEEEEEcCCceEeeeecCccccccCCCCcCCCccCCCCccceeeec
Q 004188 385 IMIGETFESDQFRKCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKLNT 464 (770)
Q Consensus 385 v~~~~~f~~~~~~~~l~~~l~~~~~~~l~~~~~a~l~vr~S~gl~v~~~~G~~~~~~k~~~~vsd~~~g~g~t~~~~l~~ 464 (770)
+++|++|+.++|.+++++.|+++.++++.+||+|+||||||+|++|++++||++..++|+++++|+|+|.|+|+.|++++
T Consensus 375 ~~~~~~F~~~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~ 454 (769)
T 2nut_A 375 MVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICG 454 (769)
T ss_dssp EEEESCSSSHHHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEE
T ss_pred EEEcCCCchhhHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeec
Confidence 99999999999999999999998888888999999999999999999999999999889999999999999999999999
Q ss_pred CCCCceEEEEEEeccCC--cCCCCCeEEEEEEEEEEecCCcEEEEEEeccccccCCCh---HHHHhccCHHHHHHHHHHH
Q 004188 465 LASKTCIAFFFQVSDEQ--KAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQS---PEIAAGFDQEAAAAIMARL 539 (770)
Q Consensus 465 ~~~~~si~~~f~~~~~~--~l~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~vt~~~~---~~v~~~~D~ea~~~llar~ 539 (770)
+++++||+|+|++++.. ++++...+|||+|++||+.+|+|||||||++++++ ++. .++|+++|+||++++|+|+
T Consensus 455 ~~~d~s~~v~f~~~~~~~~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t-~~~~~~~~v~~~~Dqea~~~llar~ 533 (769)
T 2nut_A 455 LSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWA-DAQTQIQNIAASFDQEAAAILMARL 533 (769)
T ss_dssp ECTTCCEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEEEEEECBC-CGGGHHHHHHHTBCHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEecCccccccCCCCeEEEEEEEEEECCCCCEEEEEEeeccccc-CCcccHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999642 24456889999999999999999999999999999 776 6999999999999999999
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHhcccCCCCCCCcccCcccccHHHHHHHhhccccCCCCCCChhHHHHHHHHHhc
Q 004188 540 AIHRAETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFYLRRSQFIDVFNCTPDETAFFRLMLNR 619 (770)
Q Consensus 540 a~~~~~~~~~~~~~~~l~~~l~~~~~~~~~yr~~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~ 619 (770)
|+.++.+++..++|+||+++|+++|++|+.|||+++++|+||++||+||+|||+|+||++|++++++||||+|+++++++
T Consensus 534 a~~~~~~~~~~d~~~~ld~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~ 613 (769)
T 2nut_A 534 AIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMR 613 (769)
T ss_dssp HHHHHTTC---CHHHHHHHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhhcccccccccCCCCcccccccccccCCeeEEEeCCcEEEEEEcCchhhHhhCCCCCCCcchhHHHHHhccH
Q 004188 620 EGVVGSLIMIQPTLFQYSFDGPPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPE 699 (770)
Q Consensus 620 ~~~~~~~~~iyP~L~~~~~~~~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~~~~~~g~~~~~~~~~~~~~~~~~~ 699 (770)
+++.+++.||||+||++|.++.|++++||+++|++|||||||+|++++||+|+++++|+++||+++|+|+.+++++++|+
T Consensus 614 ~~~~~~~~~iyP~L~~~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~ 693 (769)
T 2nut_A 614 QDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPV 693 (769)
T ss_dssp CCHHHHHHHHSCEEEEECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHH
T ss_pred CCHHHHHHhhcCEEEeccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHH
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEccCCChHHHHHHhhCCCCCCCCccC---CCCcccccCCCcHHHHHHHHHHHHhcC
Q 004188 700 TDAEQLVAERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYK---EGSDVIFTDDLSLEVFIDHLQTLAVQG 770 (770)
Q Consensus 700 ~~~~~l~~~R~~~p~~~~~~~g~~~~r~l~~~L~~~~~~~~~~~---~~~~~~~t~~~S~~~fl~~l~~~~~~~ 770 (770)
++|++|+++|+|+|++++|+||+||+|||++||+|+++|++... .+++.++|||+||++||+||+|++|++
T Consensus 694 ~~a~~i~~~R~p~Pr~i~~~~g~sqaRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~~~~v~~ 767 (769)
T 2nut_A 694 DDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSS 767 (769)
T ss_dssp HHHHHHHHHSSSCCEEEEEETTCSTTHHHHHHCC----------------------CCSHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCCCCeEEEEcCCCcHHHHHHHhcCCcccccCCCcCCCcCCccccccccCHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999876431 236789999999999999999999974
No 2
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=7.5e-162 Score=1433.72 Aligned_cols=736 Identities=42% Similarity=0.786 Sum_probs=684.3
Q ss_pred CCcccccCCCeeeeeccccCCCHhhhhhcCCCeeEEEccCCCCCCCCCCCCCCccCCC--CCeeEcCceEEecCCCeEEe
Q 004188 1 MDFTELEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPYDPLICSK--CGAVLNPYGRVDYASRIWTC 78 (770)
Q Consensus 1 ~~~~~~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~ip~~~~~p~RC~~--C~ayiNp~~~~~~~~~~w~C 78 (770)
|||+++|+++|||+|||+||.|++++++++||||++|+||++.+++|+++++|+||++ |+|||||||+|+.+|++|+|
T Consensus 1 ~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C 80 (768)
T 1m2o_A 1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSC 80 (768)
T ss_dssp -CHHHHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCTTCCEECSCCCBCCSTTTCCBCCTTSCEETTTTEECC
T ss_pred CCcccccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCCCCCcCCCCCCccCCCCCCeEECCceEEeCCCCEEEc
Confidence 8999999999999999999999999999999999999999987889999999999999 99999999999999999999
Q ss_pred cCCCCCCCCCcCCCCCCCCCCCccccCCCceEEEEecCCCCCCCCCCccccccccccccCCCCCCCCCCcEEEEEEecCc
Q 004188 79 PFCYGKNPFPRSYSSIAETNLPAELFPTYSSVEYAAAHDHLPNTLGSAKSFSSMASFSSVSSGGGGVLGPAFVFVVDGCM 158 (770)
Q Consensus 79 ~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vFvID~s~ 158 (770)
|||++.|++|++|.++++.++||||. ++||||++|. . + +.||+|+||||+|.
T Consensus 81 ~~C~~~N~~P~~y~~~~~~~~~pEL~--~~tvEy~~p~---~-~----------------------~~pp~~vFvIDvs~ 132 (768)
T 1m2o_A 81 PICNSRNHLPPQYTNLSQENMPLELQ--STTIEYITNK---P-V----------------------TVPPIFFFVVDLTS 132 (768)
T ss_dssp TTTCCCCBCCGGGCC---CCCCGGGT--CSEEEEECSC---C-C----------------------CSCCEEEEEEECCS
T ss_pred ccCCCCCCCChHHccCCcccCChhhc--cCCEEEECCC---C-C----------------------CCCCEEEEEEECCc
Confidence 99999999999998888889999998 9999999997 2 2 78999999999999
Q ss_pred chhHHHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhhh-ccccc---------
Q 004188 159 EESEIRAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLM-GIRCA--------- 228 (770)
Q Consensus 159 ~~~~l~~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~l-~v~d~--------- 228 (770)
+++++++++++|+++|+.||++++|||||||+.||||+++++.+++++||+|+++++.+|+++|+ ++++.
T Consensus 133 ~~~~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~ 212 (768)
T 1m2o_A 133 ETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHL 212 (768)
T ss_dssp CHHHHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC---------
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHHHhhccccccCCccccc
Confidence 99999999999999999999999999999999999999999889999999999999999998888 77653
Q ss_pred -ccccCCCCCCC---CCCcceEechhcHHHHHHHHHHhhcccCCC-CCCCCCcchHHHHHHHHHHhhcccCCCCcEEEEE
Q 004188 229 -KQHQLGKTPVI---QKQGFLLPVSECEFNVTTAIEEINSLTQRT-PGHRPQRCTGAAISAAVGLLEGCSVNTGSRIMVF 303 (770)
Q Consensus 229 -~~~~~~~~~~~---~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~-~~~~~~~~~G~Al~~A~~ll~~~~~~~gGkI~~F 303 (770)
+++ |+| +.++||+|++||++.|+++|++|+++.|++ +++++.||+|+||++|..+|+.+.++.||||++|
T Consensus 213 ~~~~-----f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F 287 (768)
T 1m2o_A 213 PNAM-----NKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILF 287 (768)
T ss_dssp -----------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEE
T ss_pred cccc-----cccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEE
Confidence 332 333 268999999999999999999999977765 7789999999999999999997667899999999
Q ss_pred ecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccccCcce
Q 004188 304 TSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEKSGG 383 (770)
Q Consensus 304 ~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~~TGG 383 (770)
++|+||.|||+|+.+++++++|+|+|++|+++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||
T Consensus 288 ~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG 367 (768)
T 1m2o_A 288 ASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGG 367 (768)
T ss_dssp ESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTC
T ss_pred eCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCc
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCChhHHHHHHHHHhccCcccccceeeeEEEEEEEcCCceEeeeecCcccccc-CCCCcCCCccCCCCccceee
Q 004188 384 FIMIGETFESDQFRKCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALGPCVSLKK-KNNLVSDSETGEGGTYMWKL 462 (770)
Q Consensus 384 ~v~~~~~f~~~~~~~~l~~~l~~~~~~~l~~~~~a~l~vr~S~gl~v~~~~G~~~~~~k-~~~~vsd~~~g~g~t~~~~l 462 (770)
.+++|++|+.++|.++++|.|+++.++++.+||+|+||||||+|++|++++||++..++ |+.+++|+|+|.|+|+.|++
T Consensus 368 ~v~~y~~f~~~~~~~~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l 447 (768)
T 1m2o_A 368 VLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKM 447 (768)
T ss_dssp CEEEESCTTSHHHHHHHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEE
T ss_pred eEEEcCCCchHHHHHHHHHHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEe
Confidence 99999999999999999999999888888899999999999999999999999999877 88899999999999999999
Q ss_pred ecCCCCceEEEEEEeccCCc---------CC--CCCeEEEEEEEEEEecCCcEEEEEEeccccccCCC-hHHHHhccCHH
Q 004188 463 NTLASKTCIAFFFQVSDEQK---------AQ--PGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQ-SPEIAAGFDQE 530 (770)
Q Consensus 463 ~~~~~~~si~~~f~~~~~~~---------l~--~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~vt~~~-~~~v~~~~D~e 530 (770)
+++++++||+|+|++++... ++ +...+|||+|++||+.+|+|||||||++++++ ++ +.++|+++|+|
T Consensus 448 ~~~~~d~t~~v~f~~~~~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t-~~~~~~v~~~~Dqe 526 (768)
T 1m2o_A 448 ASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLL-PFGTPAIAASFDQE 526 (768)
T ss_dssp EEECTTCCEEEEEEECCC-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEE-CTTCHHHHHTBCHH
T ss_pred ecCCCCCEEEEEEEeccccccccccccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeeccccc-CccHHHHHHhcCHH
Confidence 99999999999999996421 12 56789999999999999999999999999999 86 99999999999
Q ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhcccCCCCCCCcccCcccccHHHHHHHhhccccCCCCCCChhHH
Q 004188 531 AAAAIMARLAIHRAETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFYLRRSQFIDVFNCTPDET 610 (770)
Q Consensus 531 a~~~llar~a~~~~~~~~~~~~~~~l~~~l~~~~~~~~~yr~~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~s~Der 610 (770)
|++++|||+|+.++.+++..++|+||+++|+++|++|+.|||+++++|+||++||+||+|||+|+||++|++++++||||
T Consensus 527 a~~~llar~av~~~~~~~~~d~r~~l~~~li~l~~~~~~Yrk~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~spDer 606 (768)
T 1m2o_A 527 AAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDET 606 (768)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHSBCCTTCGGGCBCCTTTTHHHHHHHHHHHSTTTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhcccccCCCCCChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHhhcccccccccCCCCcccccccccccCCeeEEEeCCcEEEEEEcCchhhHhhCCCCCCCcchh
Q 004188 611 AFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHEN 690 (770)
Q Consensus 611 ~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~~~~~~g~~~~~~~~~ 690 (770)
+|++++++++++.+++.||||+||+||.++.|++++||+++|++|||||||+|++++||+|+++++|+++||+++|+|+.
T Consensus 607 ~~~~~~l~~~~~~~~l~~iyP~L~~~~~~~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~ 686 (768)
T 1m2o_A 607 AFYRHIFTREDTTNSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYAD 686 (768)
T ss_dssp HHHHHHHTTSCHHHHHHHHSCEEEEECSSSCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHH
T ss_pred HHHHHHHHcCCHHHHHHhhCCeEEEecCCCCCcceeCcHHHcCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhh
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccHHHHHHHHHcCCCCcEEEEEccCCChHHHHHHhhCCCCCCCCccCCCCcccccCCCcHHHHHHHHHHHHhcC
Q 004188 691 LRKLLEAPETDAEQLVAERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYKEGSDVIFTDDLSLEVFIDHLQTLAVQG 770 (770)
Q Consensus 691 ~~~~~~~~~~~~~~l~~~R~~~p~~~~~~~g~~~~r~l~~~L~~~~~~~~~~~~~~~~~~t~~~S~~~fl~~l~~~~~~~ 770 (770)
+++++++|+.+|++|+++|+|.|++++|+||++|+|||++||+|+++|++...+++..++|||+||++||+||||+||++
T Consensus 687 ~~~ll~~p~~~a~~i~~~R~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~~~~~~~~i~tdd~S~~~f~~~L~k~~v~~ 766 (768)
T 1m2o_A 687 FKALLEEPKLEAAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQVAVSG 766 (768)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCEEEEEETTCGGGHHHHTTSBCC-----------CCCCCCSCCHHHHHHHHHHHHCC-
T ss_pred HHHHhhhhHHHHHHHHhcCCCCceEEEECCCCcHHHHHHHHcCCCccccccccCCccccccCCcCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998875433456678999999999999999999974
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=9.5e-139 Score=1226.29 Aligned_cols=663 Identities=20% Similarity=0.310 Sum_probs=598.0
Q ss_pred ccCCCeeeeeccccCCCHhhhhhcCCCeeEEEccCCCCCCCCCCCC-CCccCCCCCeeEcCceEEecCCCeEEecCCCCC
Q 004188 6 LEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSSEIPVLPY-DPLICSKCGAVLNPYGRVDYASRIWTCPFCYGK 84 (770)
Q Consensus 6 ~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~ip~~~~-~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 84 (770)
||+|+|||+|||+||.|++++++++||||++|+||++.+++|++++ +|+||++|+|||||||+|.+ +++|+||||+..
T Consensus 37 n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~~P~v~~~~p~RC~rCrayiNPf~~f~~-~~~w~Cn~C~~~ 115 (751)
T 3eh1_A 37 NCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRSCRTYINPFVSFID-QRRWKCNLCYRV 115 (751)
T ss_dssp SCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSCCCEECCSCCCBCTTTCCBCCTTCEESS-SSEEECTTTCCE
T ss_pred CCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCCCCCccCCCCCCcccCccCEeCCceEEec-CCEEEcccccCC
Confidence 9999999999999999999999999999999999998888998876 58999999999999999955 689999999999
Q ss_pred CCCCcCCC--CCC----CCCCCccccCCCceEEEEecCCCCCCCCCCccccccccccccCCCCCCCCCCcEEEEEEecCc
Q 004188 85 NPFPRSYS--SIA----ETNLPAELFPTYSSVEYAAAHDHLPNTLGSAKSFSSMASFSSVSSGGGGVLGPAFVFVVDGCM 158 (770)
Q Consensus 85 N~~p~~y~--~~~----~~~~~pEL~~~~~tvey~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vFvID~s~ 158 (770)
|++|++|. +++ +.+.||||. ++||||++|++|+.+| +.||+|+||||+|.
T Consensus 116 N~~P~~y~~~~~~~~~~d~~~rpEL~--~~tvEy~~p~~y~~r~----------------------p~pp~yvFvIDvs~ 171 (751)
T 3eh1_A 116 NDVPEEFMYNPLTRSYGEPHKRPEVQ--NSTVEFIASSDYMLRP----------------------PQPAVYLFVLDVSH 171 (751)
T ss_dssp EECCGGGC---------CGGGSHHHH--CSEEEEEECGGGCSSS----------------------CCCCEEEEEEECSH
T ss_pred CCCCHHHhcccccccccCcccCchhc--cceEEEEcChhhhcCC----------------------CCCcEEEEEEEccH
Confidence 99999983 222 235689998 9999999999999775 89999999999999
Q ss_pred chhH---HHHHHHHHHHHhhcCCCCc--EEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhhhcccccccccC
Q 004188 159 EESE---IRAVKHELLRVMEQLPENA--LVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCAKQHQL 233 (770)
Q Consensus 159 ~~~~---l~~~~~~i~~~l~~lp~~~--~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~l~v~d~~~~~~ 233 (770)
++++ +++++++|+++|+.||+++ +|||||||+.||||+++.+ . + .++|++++|++++
T Consensus 172 ~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~-------------~--~-~~qmlvv~dl~d~-- 233 (751)
T 3eh1_A 172 NAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEG-------------L--S-QPQMLIVSDIDDV-- 233 (751)
T ss_dssp HHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTT-------------C--S-SCEEEEESCTTCT--
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCC-------------c--c-cceeecccccccc--
Confidence 9988 8999999999999999865 9999999999999999853 1 1 2478899999988
Q ss_pred CCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccCCCCcEEEEEecCCCCCCCC
Q 004188 234 GKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTGSRIMVFTSGPATMGPG 313 (770)
Q Consensus 234 ~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gGkI~~F~sg~pt~GpG 313 (770)
|+|.+++||+|++||++.|+++|++|+.++. .++++.+|+|+||++|..+|+ ..||||++|++|+||.|||
T Consensus 234 ---f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~--~~~~~~~~~G~AL~aA~~ll~----~~GGrI~~F~sg~pt~GpG 304 (751)
T 3eh1_A 234 ---FLPTPDSLLVNLYESKELIKDLLNALPNMFT--NTRETHSALGPALQAAFKLMS----PTGGRVSVFQTQLPSLGAG 304 (751)
T ss_dssp ---TSCCGGGTSEETTTTHHHHHHHHHHGGGTST--TCSCCCCCHHHHHHHHHHHHT----TTCEEEEEEECSCCCSSTT
T ss_pred ---CCCChhhhcccHHHHHHHHHHHHHhhhHhhc--CCCCCccchHHHHHHHHHHhh----cCCCEEEEEecCCCCCCCC
Confidence 8887899999999999999999999998764 678999999999999999998 7899999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccccCcceeEEEeCCCCh
Q 004188 314 IIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIGETFES 393 (770)
Q Consensus 314 ~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~~TGG~v~~~~~f~~ 393 (770)
+|+.|++.+. ++|. ++ +++++++.+||++||.+|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+.
T Consensus 305 ~l~~r~~~~~-~~~~---ke-~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~ 379 (751)
T 3eh1_A 305 LLQSREDPNQ-RSST---KV-VQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHY 379 (751)
T ss_dssp CCCCCCCSCG-GGGS---SS-CTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBT
T ss_pred cccccccccc-CCCc---hh-hhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCccc
Confidence 9999987663 5553 23 67999999999999999999999999999999999999999999999999999999985
Q ss_pred -------hHHHHHHHHHhccCcccccceeeeEEEEEEEcCCceEeeeecCccccccCCCCcCCCccCCCCccceeeecCC
Q 004188 394 -------DQFRKCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKLNTLA 466 (770)
Q Consensus 394 -------~~~~~~l~~~l~~~~~~~l~~~~~a~l~vr~S~gl~v~~~~G~~~~~~k~~~~vsd~~~g~g~t~~~~l~~~~ 466 (770)
++|.++|++.|+++ +||+|+||||||+|++|++++||++.+ +++.|++++++
T Consensus 380 ~~~~~~~~~f~~dl~r~l~~~------~gf~a~mrVR~S~glkv~~~~G~~~~~---------------~t~~~~l~~i~ 438 (751)
T 3eh1_A 380 THNPSQAEKLQKDLKRYLTRK------IGFEAVMRIRCTKGLSMHTFHGNFFVR---------------STDLLSLANIN 438 (751)
T ss_dssp TTBHHHHHHHHHHHHHHHHSC------CEEEEEEEEEECTTEEEEEEESSSEEC---------------SSSEEEEEEEC
T ss_pred ccchhHHHHHHHHHHHHHhhh------hccceEEEEEecCCeEEEEeeCCeEeC---------------CCCceEeccCC
Confidence 37999999999986 999999999999999999999999864 67899999999
Q ss_pred CCceEEEEEEeccCCcCCCCCeEEEEEEEEEEecCCcEEEEEEeccccccCCChHHHHhccCHHHHHHHHHHHHHHHHhh
Q 004188 467 SKTCIAFFFQVSDEQKAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQSPEIAAGFDQEAAAAIMARLAIHRAET 546 (770)
Q Consensus 467 ~~~si~~~f~~~~~~~l~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~vt~~~~~~v~~~~D~ea~~~llar~a~~~~~~ 546 (770)
+|+|++|+|++++ ++.+...+|||+|++||+.+|+|||||||++++++ +++.++|+++|+||++++|||+|+.++.+
T Consensus 439 ~d~s~~v~~~~~~--~l~~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt-~~~~~v~~~~DqeA~~~llar~av~~~~~ 515 (751)
T 3eh1_A 439 PDAGFAVQLSIEE--SLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVV-SSLADVYAGVDVQAAICLLANMAVDRSVS 515 (751)
T ss_dssp TTCCEEEEEEESS--CCCSCSEEEEEEEEEEECTTSCEEEEEEEEEEEEE-CSHHHHHHTBCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEcC--CCCCCCceEEEEEEeeecCCCCEEEEEEEeccccc-CCHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 9999999999994 57667899999999999999999999999999999 99999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhcccCCCC-CCCcccCcccccHHHHHHHhhccccCCC-CCCChhHHHHHHHHHhcCChHH
Q 004188 547 CYSRDVVRWLDDTLIRFTSKFGDYVPED-PSSFRLSSNFSLYPQFMFYLRRSQFIDV-FNCTPDETAFFRLMLNREGVVG 624 (770)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~~~yr~~~-~~~l~lp~~lk~lP~~~~~L~ks~~l~~-~~~s~Der~~~~~~l~~~~~~~ 624 (770)
++..++|+||+++|+++++.|+.|.+.. +++|+||++||+||+||++|+||.+|+. ++++||||+|++++++++++.+
T Consensus 516 ~~l~d~r~~l~~~li~il~~Yr~~~~~~~~~~l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~~~~~ 595 (751)
T 3eh1_A 516 SSLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVH 595 (751)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTCC-----CCEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHSCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCcHHHHHHHHHHHHHHccHhhcCCCCCChhHHHHHHHHHhCCCHHH
Confidence 9999999999999999977666665543 3589999999999999999999999994 7999999999999999999999
Q ss_pred HHHhhccccccccc---------CC----CCcccccccccccCCeeEEEeCCcEEEEEEcCchh-hHhh--CCCC-----
Q 004188 625 SLIMIQPTLFQYSF---------DG----PPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIA-QWKK--HGYD----- 683 (770)
Q Consensus 625 ~~~~iyP~L~~~~~---------~~----~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~-~~~~--~g~~----- 683 (770)
++.||||+||++|. ++ .|..++||+++|++|||||||+|++++||+|++++ +|++ .|+.
T Consensus 596 ~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~ 675 (751)
T 3eh1_A 596 LMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASI 675 (751)
T ss_dssp HHHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGC
T ss_pred HHhhccceEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhc
Confidence 99999999999983 22 24456789999999999999999999999999997 7775 3653
Q ss_pred ----------CCCcchhHHHHHhccHHHHHHHHHcCCCCcEEEEEccCCChHHHHHHhhCCCCCCCCccCCCCcccccCC
Q 004188 684 ----------KDPNHENLRKLLEAPETDAEQLVAERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYKEGSDVIFTDD 753 (770)
Q Consensus 684 ----------~~~~~~~~~~~~~~~~~~~~~l~~~R~~~p~~~~~~~g~~~~r~l~~~L~~~~~~~~~~~~~~~~~~t~~ 753 (770)
+++.+++++++++ .++++|..+|++++++||++.+.+|.+.|+||++ .+.
T Consensus 676 ~~~~~~lp~~~t~~s~~vr~ii~-------~lr~~r~~~~~l~vvr~~~~~~~~f~~~LvED~~-------------~~~ 735 (751)
T 3eh1_A 676 PQKMTHLPELDTLSSERARSFIT-------WLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRT-------------EAA 735 (751)
T ss_dssp CSSBCCCCCCSSHHHHHHHHHHH-------HHHHTSSSCCEEEEEESSSSSHHHHHTTCTTSCB-------------TTB
T ss_pred CcccccCCCCCCHHHHHHHHHHH-------HHHhcCCCcceEEEEeCCCchHHHHHHhCcccCC-------------CCC
Confidence 2344567777776 8888999999999999999999999999999863 257
Q ss_pred CcHHHHHHHHHHHHhc
Q 004188 754 LSLEVFIDHLQTLAVQ 769 (770)
Q Consensus 754 ~S~~~fl~~l~~~~~~ 769 (770)
+||.|||+||||+|.+
T Consensus 736 ~SY~~fL~~~h~~i~~ 751 (751)
T 3eh1_A 736 FSYYEFLLHVQQQICK 751 (751)
T ss_dssp CCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999999864
No 4
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=5.1e-137 Score=1216.25 Aligned_cols=666 Identities=18% Similarity=0.262 Sum_probs=599.6
Q ss_pred ccCCCeeeeeccccCCCHhhhhhcCCCeeEEEccCCCCC----CCCCCC---CCCccCCCCCeeEcCceEEecCCCeEEe
Q 004188 6 LEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSS----EIPVLP---YDPLICSKCGAVLNPYGRVDYASRIWTC 78 (770)
Q Consensus 6 ~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~----~ip~~~---~~p~RC~~C~ayiNp~~~~~~~~~~w~C 78 (770)
||+|+|||+|||+||.|++++++++||||++|+||++.. ++|+++ ++|+||++|||||||||+|+++|++|+|
T Consensus 44 n~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~C 123 (770)
T 3efo_B 44 NASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQC 123 (770)
T ss_dssp SCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEEC
T ss_pred CCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEEe
Confidence 999999999999999999999999999999999999763 367764 5799999999999999999999999999
Q ss_pred cCCCCCCCCCcCC-CCCCCCC------CCccccCCCceEEEEecCCCCCCCCCCccccccccccccCCCCCCCCCCcEEE
Q 004188 79 PFCYGKNPFPRSY-SSIAETN------LPAELFPTYSSVEYAAAHDHLPNTLGSAKSFSSMASFSSVSSGGGGVLGPAFV 151 (770)
Q Consensus 79 ~~C~~~N~~p~~y-~~~~~~~------~~pEL~~~~~tvey~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 151 (770)
|||+..|++|++| ++++..+ +||||. ++||||++|.+|+.. ..++.||+|+
T Consensus 124 n~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~--~~tvEf~ap~eY~~~--------------------~~~p~pp~y~ 181 (770)
T 3efo_B 124 GFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELS--LGSYEYVATLDYCRK--------------------SKPPNPPAFI 181 (770)
T ss_dssp TTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHH--CSEEEEECCGGGSGG--------------------GSCCCCCEEE
T ss_pred ccccccCCCchHhhccccccccccccccCcccc--cCceeeecCHHHhcc--------------------CCCCCCcEEE
Confidence 9999999999999 6666543 689999 999999999999831 1238999999
Q ss_pred EEEecCcchhH---HHHHHHHHHHHhhcCCCC-------cEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhh
Q 004188 152 FVVDGCMEESE---IRAVKHELLRVMEQLPEN-------ALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQH 221 (770)
Q Consensus 152 FvID~s~~~~~---l~~~~~~i~~~l~~lp~~-------~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~ 221 (770)
||||+|.++++ +++++++|+++|+.||++ ++|||||||+.||||++++. .+| ++
T Consensus 182 FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~---------------~~q-~q 245 (770)
T 3efo_B 182 FMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSN---------------LAQ-PQ 245 (770)
T ss_dssp EEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTT---------------CSS-CE
T ss_pred EEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCc---------------ccC-ce
Confidence 99999999874 899999999999999974 89999999999999999863 123 57
Q ss_pred hhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccCCCCcEEE
Q 004188 222 LMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTGSRIM 301 (770)
Q Consensus 222 ~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gGkI~ 301 (770)
|++++|++|+ |+|..++||+|++||++.|+++|++|++++. ..+.+.+|+|+||++|..+++. .+.||||+
T Consensus 246 ~~vv~d~~d~-----f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~--~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~ 316 (770)
T 3efo_B 246 MMVVTDVGEV-----FVPLLDGFLVNYQESQSVIHNLLDQIPDMFA--DSNENETVFAPVIQAGMEALKA--ADCPGKLF 316 (770)
T ss_dssp EEEECCTTSC-----CCCCSSSSSBCTTTTHHHHHHHHHHHHHHHH--TCCCCCCCCHHHHHHHHHHHHH--HTCCEEEE
T ss_pred EEEecccccc-----cCCCccceeeeHHHHHHHHHHHHHhhHhhcc--CCCCCcchHHHHHHHHHHHhcc--CCCCcEEE
Confidence 7889999988 8888899999999999999999999999863 4455788999999999999972 25899999
Q ss_pred EEecCCCC-CCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccccC
Q 004188 302 VFTSGPAT-MGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEK 380 (770)
Q Consensus 302 ~F~sg~pt-~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~~ 380 (770)
+|++|+|+ .|||+|+.|++++.+|++ || +++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.
T Consensus 317 ~F~s~lP~t~GpG~l~~r~~~~~~~t~----ke-~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~ 391 (770)
T 3efo_B 317 IFHSSLPTAEAPGKLKNRDDKKLVNTD----KE-KILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQL 391 (770)
T ss_dssp EEECSCCCSSSTTCCCCCCCCCCSSCS----CG-GGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHH
T ss_pred EEecCCCCcCCCccccccccccccCCc----ch-hhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhh
Confidence 99999666 899999999999999974 33 5799999999999999999999999999999999999999999999
Q ss_pred cceeEEEeCCCChh----HHHHHHHHHhccCcccccceeeeEEEEEEEcCCceEeeeecCccccccCCCCcCCCccCCCC
Q 004188 381 SGGFIMIGETFESD----QFRKCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGG 456 (770)
Q Consensus 381 TGG~v~~~~~f~~~----~~~~~l~~~l~~~~~~~l~~~~~a~l~vr~S~gl~v~~~~G~~~~~~k~~~~vsd~~~g~g~ 456 (770)
|||.+++|++|+.+ +|.++|++.++++ +||+|+||||||+|++|++++||++.. +
T Consensus 392 TGG~v~~y~~F~~~~~~~~f~~dl~~~l~~~------~gf~a~mrVR~S~gl~v~~~~G~~~~~---------------~ 450 (770)
T 3efo_B 392 TGGTLYKYNNFQMHLDRQQFLNDLRNDIEKK------IGFDAIMRVRTSTGFRATDFFGGILMN---------------N 450 (770)
T ss_dssp TTCCEEECTTCCHHHHHHHHHHHHHHHHHSC------EEEEEEEEEEECTTEEEEEEESSCBCS---------------S
T ss_pred cCceEEEecCCcchhHHHHHHHHHHHhhhhc------eeeeEEEEEEecCCeEEEEeECCeeCC---------------C
Confidence 99999999999964 6777888888775 999999999999999999999998753 6
Q ss_pred ccceeeecCCCCceEEEEEEeccCCcCCCCCeEEEEEEEEEEecCCcEEEEEEeccccccCCChHHHHhccCHHHHHHHH
Q 004188 457 TYMWKLNTLASKTCIAFFFQVSDEQKAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQSPEIAAGFDQEAAAAIM 536 (770)
Q Consensus 457 t~~~~l~~~~~~~si~~~f~~~~~~~l~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~vt~~~~~~v~~~~D~ea~~~ll 536 (770)
+++|+++++++++||+|+|++++ ++.+...+|||+|++||+.+|+|||||||++++++ +++.++|+++|+||++++|
T Consensus 451 t~~~~l~~~~~d~s~~v~f~~~~--~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt-~~~~~v~~~~Dqea~~~ll 527 (770)
T 3efo_B 451 TTDVEMAAIDCDKAVTVEFKHDD--KLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCS-SQLADLYKSCETDALINFF 527 (770)
T ss_dssp SSCEEEEEEESSCCEEEEEEESS--CCBTTTBEEEEEEEEEECTTCCEEEEEEEEEEEEE-SCHHHHHHTBCHHHHHHHH
T ss_pred CCceEecccCcCceEEEEEEecC--CCCCCCcEEEEEEEEEEcCCCCEEEEEEEechhhc-ccHHHHHHhcCHHHHHHHH
Confidence 78999999999999999999984 57666789999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHhcccCCCC-----CCCcccCcccccHHHHHHHhhccccCCC-CCCChhHH
Q 004188 537 ARLAIHRAETCYSRDVVRWLDDTLIRFTSKFGDYVPED-----PSSFRLSSNFSLYPQFMFYLRRSQFIDV-FNCTPDET 610 (770)
Q Consensus 537 ar~a~~~~~~~~~~~~~~~l~~~l~~~~~~~~~yr~~~-----~~~l~lp~~lk~lP~~~~~L~ks~~l~~-~~~s~Der 610 (770)
+|+|+.++.+++..++|++|.++++++ |+.|||+| ++||+||++||+||+||++|+||++|++ ++++||||
T Consensus 528 ar~av~~~~~~~l~~~r~~L~~~~~~~---l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der 604 (770)
T 3efo_B 528 AKSAFKAVLHQPLKVIREILVNQTAHM---LACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDER 604 (770)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHH---HHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSCSSSSCHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHH---HHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhhcCCCCCCccHH
Confidence 999999999999999999998888876 99999986 3679999999999999999999999996 79999999
Q ss_pred HHHHHHHhcCChHHHHHhhccccccccc-----CCCCcccccccccccCCeeEEEeCCcEEEEEEcCchhhHhh---CCC
Q 004188 611 AFFRLMLNREGVVGSLIMIQPTLFQYSF-----DGPPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKK---HGY 682 (770)
Q Consensus 611 ~~~~~~l~~~~~~~~~~~iyP~L~~~~~-----~~~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~~~~~---~g~ 682 (770)
+|++++++++++.+++.||||+||++|. ...|++++||.++|++|||||||+|++++||+|+++++|+. .|+
T Consensus 605 ~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~~~~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv 684 (770)
T 3efo_B 605 AYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNV 684 (770)
T ss_dssp HHHHHHHHHCCHHHHHHHHSCEEEECTTCCSSSCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSS
T ss_pred HHHHHHHHCCCHHHHHHhhccceEEEeccccccccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCC
Confidence 9999999999999999999999999983 24789999999999999999999999999999999996653 243
Q ss_pred C---------------CCCcchhHHHHHhccHHHHHHHHHcCCCCcEEEEEccCCChHHHHHHhhCCCCCCCCccCCCCc
Q 004188 683 D---------------KDPNHENLRKLLEAPETDAEQLVAERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYKEGSD 747 (770)
Q Consensus 683 ~---------------~~~~~~~~~~~~~~~~~~~~~l~~~R~~~p~~~~~~~g~~~~r~l~~~L~~~~~~~~~~~~~~~ 747 (770)
. +++..+++|++++ .++++|..++++++++||++.+.+|.+.|+||++
T Consensus 685 ~~~~~i~~~~~~lp~~~~~~s~~vr~ii~-------~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~~---------- 747 (770)
T 3efo_B 685 PSFAHINTDMTLLPEVGNPYSQQLRMIMG-------IIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKG---------- 747 (770)
T ss_dssp SSGGGCCTTCCSCCCCCSSHHHHHHHHHH-------HHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSCC----------
T ss_pred CchhhcCcccccCCCCCCHHHHHHHHHHH-------HHHHhCCCCccEEEEeCCCChHHHHHHhCcccCC----------
Confidence 2 4455677888887 8999999999999999999889999999999863
Q ss_pred ccccCCCcHHHHHHHHHHHHhc
Q 004188 748 VIFTDDLSLEVFIDHLQTLAVQ 769 (770)
Q Consensus 748 ~~~t~~~S~~~fl~~l~~~~~~ 769 (770)
..+.+||.|||+||||+|.+
T Consensus 748 --~~~~~SY~dfL~~lh~~i~~ 767 (770)
T 3efo_B 748 --LYGGSSYVDFLCCVHKEICQ 767 (770)
T ss_dssp -----CCCHHHHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHHHHH
Confidence 12579999999999999976
No 5
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=2.3e-136 Score=1210.15 Aligned_cols=666 Identities=20% Similarity=0.278 Sum_probs=599.6
Q ss_pred ccCCCeeeeeccccCCCHhhhhhcCCCeeEEEccCCCCC----CCCCCC---CCCccCCCCCeeEcCceEEecCCCeEEe
Q 004188 6 LEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQSS----EIPVLP---YDPLICSKCGAVLNPYGRVDYASRIWTC 78 (770)
Q Consensus 6 ~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~----~ip~~~---~~p~RC~~C~ayiNp~~~~~~~~~~w~C 78 (770)
||+|+|||+|||+||.|+++++++++|||++|+||++.. ++|+++ ++|+||++|||||||||+|+++|++|+|
T Consensus 40 n~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~C 119 (766)
T 3eh2_A 40 NASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQC 119 (766)
T ss_dssp SCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEEC
T ss_pred CCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEEe
Confidence 999999999999999999999999999999999999763 367775 4799999999999999999999999999
Q ss_pred cCCCCCCCCCcCC-CCCCCC------CCCccccCCCceEEEEecCCCCCCCCCCccccccccccccCCCCCCCCCCcEEE
Q 004188 79 PFCYGKNPFPRSY-SSIAET------NLPAELFPTYSSVEYAAAHDHLPNTLGSAKSFSSMASFSSVSSGGGGVLGPAFV 151 (770)
Q Consensus 79 ~~C~~~N~~p~~y-~~~~~~------~~~pEL~~~~~tvey~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 151 (770)
|||+..|++|++| +++++. ++||||. .++|||++|.||+.. ..+|.||+|+
T Consensus 120 n~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~--~~~vef~a~~eY~~~--------------------~~~p~pp~y~ 177 (766)
T 3eh2_A 120 CFCSCINDVPPQYFQHLDHTGKRVDAYDRPELS--LGSYEFLATVDYCKN--------------------NKFPSPPAFI 177 (766)
T ss_dssp TTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHH--CSEEEEECCGGGSGG--------------------GSCCCCCEEE
T ss_pred ccccccCCCCHHHhccccccccccccccCcccc--cCceeeecCHhhccC--------------------CCCCCCCEEE
Confidence 9999999999999 555443 4699999 999999999999852 1238999999
Q ss_pred EEEecCcchhH---HHHHHHHHHHHhhcCCCC-------cEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhh
Q 004188 152 FVVDGCMEESE---IRAVKHELLRVMEQLPEN-------ALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQH 221 (770)
Q Consensus 152 FvID~s~~~~~---l~~~~~~i~~~l~~lp~~-------~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~ 221 (770)
||||+|.++++ +++++++|+++|+.||++ ++|||||||+.||||+|+++ . + .++
T Consensus 178 FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~-------------~--~-~~q 241 (766)
T 3eh2_A 178 FMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSS-------------L--A-QPQ 241 (766)
T ss_dssp EEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTT-------------C--S-SCE
T ss_pred EEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCC-------------C--C-Cce
Confidence 99999999874 899999999999999964 89999999999999999863 1 1 256
Q ss_pred hhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccCCCCcEEE
Q 004188 222 LMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTGSRIM 301 (770)
Q Consensus 222 ~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gGkI~ 301 (770)
|++++|++|+ |+|..++||+|++||++.|+++|++|++++. ....+.+|+|+||++|..+++. .+.||||+
T Consensus 242 ~~vv~dl~d~-----f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~--~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~ 312 (766)
T 3eh2_A 242 MMVVSDVADM-----FVPLLDGFLVNVNESRAVITSLLDQIPEMFA--DTRETETVFVPVIQAGMEALKA--AECAGKLF 312 (766)
T ss_dssp EEEECCTTTC-----CCCCCTTSSBCTTTTHHHHHHHHHHHHHHHT--TCCCCCCCSHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEecChhhh-----ccccccceeEeHHHHHHHHHHHHHhhhhhcc--CCCCCcchHHHHHHHHHHHhcc--CCCCcEEE
Confidence 8899999988 8888899999999999999999999999874 4556788999999999999973 35799999
Q ss_pred EEecCCCC-CCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccccC
Q 004188 302 VFTSGPAT-MGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEK 380 (770)
Q Consensus 302 ~F~sg~pt-~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~~ 380 (770)
+|++|+|+ .|||+|+.|++++.+|++ +| +++++++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.
T Consensus 313 ~F~s~lP~t~GpG~l~~r~~~~~~~sd----ke-~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~ 387 (766)
T 3eh2_A 313 LFHTSLPIAEAPGKLKNRDDRKLINTD----KE-KTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQL 387 (766)
T ss_dssp EEECSCCCSSSTTCCCCCCCGGGTTST----TG-GGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHH
T ss_pred EEecCCCCcCCCcccccccccccCCCc----ch-hhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhh
Confidence 99999776 899999999999999974 33 4799999999999999999999999999999999999999999999
Q ss_pred cceeEEEeCCCChhH----HHHHHHHHhccCcccccceeeeEEEEEEEcCCceEeeeecCccccccCCCCcCCCccCCCC
Q 004188 381 SGGFIMIGETFESDQ----FRKCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGG 456 (770)
Q Consensus 381 TGG~v~~~~~f~~~~----~~~~l~~~l~~~~~~~l~~~~~a~l~vr~S~gl~v~~~~G~~~~~~k~~~~vsd~~~g~g~ 456 (770)
|||.+++|++|+.+. |.++|++.++++ +||+|+||||||+|++|++++||++.+ +
T Consensus 388 TGG~v~~y~~F~~~~d~~~f~~dl~~~l~~~------~gf~a~mrVR~S~glkv~~~~G~~~~~---------------~ 446 (766)
T 3eh2_A 388 TGGSVYKYASFQVENDQERFLSDLRRDVQKV------VGFDAVMRVRTSTGIRAVDFFGAFYMS---------------N 446 (766)
T ss_dssp TTCCEEECTTCCHHHHHHHHHHHHHHHHHSC------EEEEEEEEEEECTTEEEEEEEESCBCS---------------S
T ss_pred cCceEEEeCCCcchhHHHHHHHHHHHHhhhc------ceeeEEEEEEecCCeEEEEeECCeecC---------------C
Confidence 999999999998764 888899999886 999999999999999999999998753 6
Q ss_pred ccceeeecCCCCceEEEEEEeccCCcCCCCCeEEEEEEEEEEecCCcEEEEEEeccccccCCChHHHHhccCHHHHHHHH
Q 004188 457 TYMWKLNTLASKTCIAFFFQVSDEQKAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQSPEIAAGFDQEAAAAIM 536 (770)
Q Consensus 457 t~~~~l~~~~~~~si~~~f~~~~~~~l~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~vt~~~~~~v~~~~D~ea~~~ll 536 (770)
+++|+++++++|+||+|+|+++ +++.+...+|||+|++||+.+|+|||||||++++++ +++.++|+++|+||++++|
T Consensus 447 t~~~~l~~i~~d~s~~v~f~~~--~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt-~~~~~v~~~~Dqea~~~ll 523 (766)
T 3eh2_A 447 TTDVELAGLDGDKTVTVEFKHD--DRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCC-TQLADLYRNCETDTLINYM 523 (766)
T ss_dssp SSCEEEEEEETTCCEEEEEEES--SCCCTTTCEEEEEEEEEECTTSCEEEEEEEEEEEEE-SSHHHHHHTBCHHHHHHHH
T ss_pred CCceeeccCCCCceEEEEEEec--CCCCCCCcEEEEEEEEeEcCCCCEEEEEEEEeeEec-CCHHHHHHhcCHHHHHHHH
Confidence 7899999999999999999998 457667899999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHhcccCCCC-----CCCcccCcccccHHHHHHHhhccccCCC-CCCChhHH
Q 004188 537 ARLAIHRAETCYSRDVVRWLDDTLIRFTSKFGDYVPED-----PSSFRLSSNFSLYPQFMFYLRRSQFIDV-FNCTPDET 610 (770)
Q Consensus 537 ar~a~~~~~~~~~~~~~~~l~~~l~~~~~~~~~yr~~~-----~~~l~lp~~lk~lP~~~~~L~ks~~l~~-~~~s~Der 610 (770)
+|+|+.++.+++..++|++|.++++++ |+.|||+| ++||+||++||+||+||++|+||++|+. ++++||||
T Consensus 524 ar~av~~~~~~~~~~~R~~l~~~~~~~---l~~Yrk~~~~~~s~~ql~lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der 600 (766)
T 3eh2_A 524 AKFAYRGVLNSPVKAVRDTLITQCAQI---LACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDR 600 (766)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHH---HHHHHHHC------CCCCCCGGGTTHHHHHHHHHTSTTTSCCTTCCHHHH
T ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHH---HHHHHhhccCCCCccceecCHHHHHHHHHHHHHHccHhhcCCCCCCccHH
Confidence 999999999999999999999998887 99999985 3579999999999999999999999996 69999999
Q ss_pred HHHHHHHhcCChHHHHHhhccccccccc---C--CCCcccccccccccCCeeEEEeCCcEEEEEEcCchh-hHhh--CCC
Q 004188 611 AFFRLMLNREGVVGSLIMIQPTLFQYSF---D--GPPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIA-QWKK--HGY 682 (770)
Q Consensus 611 ~~~~~~l~~~~~~~~~~~iyP~L~~~~~---~--~~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~-~~~~--~g~ 682 (770)
+|++++++++++.+++.||||+||++|. + ..|++++||.++|++|||||||+|++++||+|++++ +|++ .|+
T Consensus 601 ~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFgv 680 (766)
T 3eh2_A 601 AYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSV 680 (766)
T ss_dssp HHHHHHHHHCCHHHHHHHHSCEEEECSSCCCSCC--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHhheEEEeecCCcccccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHHHHcCC
Confidence 9999999999999999999999999983 3 368999999999999999999999999999999998 4554 254
Q ss_pred C---------------CCCcchhHHHHHhccHHHHHHHHHcCCCCcEEEEEccCCChHHHHHHhhCCCCCCCCccCCCCc
Q 004188 683 D---------------KDPNHENLRKLLEAPETDAEQLVAERIPAPKIIKCDQHGSQARFLLAKLNPSVTQDSMYKEGSD 747 (770)
Q Consensus 683 ~---------------~~~~~~~~~~~~~~~~~~~~~l~~~R~~~p~~~~~~~g~~~~r~l~~~L~~~~~~~~~~~~~~~ 747 (770)
. +++..++++++++ .++++|..++++++++||++.+.+|.+.|+||++.
T Consensus 681 ~~~~~i~~~~~~lp~~~~~~s~~vr~ii~-------~lr~~~~~~~~l~ivr~~~~~~~~f~~~LvED~~~--------- 744 (766)
T 3eh2_A 681 SSFSQITSGLSVLPVLDNPLSKKVRGLID-------SLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSL--------- 744 (766)
T ss_dssp SSGGGSCTTCCSCCCCSSHHHHHHHHHHH-------HHHTTSSSCCEEEEEESSSSTHHHHHTTCTTSCCT---------
T ss_pred CchhhcCcccccCCCCCCHHHHHHHHHHH-------HHHHhCCCCceEEEEeCCCChHHHHHHhCcccCCC---------
Confidence 3 3333567777776 89999999999999999988889999999998631
Q ss_pred ccccCCCcHHHHHHHHHHHHhc
Q 004188 748 VIFTDDLSLEVFIDHLQTLAVQ 769 (770)
Q Consensus 748 ~~~t~~~S~~~fl~~l~~~~~~ 769 (770)
.+.+||.|||+||||+|.+
T Consensus 745 ---~~~~SY~dfL~~lh~~i~~ 763 (766)
T 3eh2_A 745 ---SGGASYVDFLCHMHKEIRQ 763 (766)
T ss_dssp ---TTCCCHHHHHHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHHHHHHHH
Confidence 1479999999999999975
No 6
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=5.4e-134 Score=1201.31 Aligned_cols=666 Identities=17% Similarity=0.242 Sum_probs=587.7
Q ss_pred ccCCCeeeeeccccCCCHhhhhhcCCCeeEEEccCCCC----CCCCCCCCC-CccCCCCCeeEcCceEEecCCCeEEecC
Q 004188 6 LEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQS----SEIPVLPYD-PLICSKCGAVLNPYGRVDYASRIWTCPF 80 (770)
Q Consensus 6 ~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~----~~ip~~~~~-p~RC~~C~ayiNp~~~~~~~~~~w~C~~ 80 (770)
||+++|||+|||+||.|++++++++|||||+|+||++. +++|+++++ |+||++|+|||||||+|+++|++|+|||
T Consensus 176 n~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~g~~W~Cnf 255 (926)
T 1m2v_B 176 NASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNF 255 (926)
T ss_dssp SCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETTTTEEECTT
T ss_pred CCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEccC
Confidence 89999999999999999999999999999999999975 357888774 9999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCCCCCCC------CccccCCCceEEEEecCCCCCCCCCCccccccccccccCCCCCCCCCCcEEEEEE
Q 004188 81 CYGKNPFPRSYSSIAETNL------PAELFPTYSSVEYAAAHDHLPNTLGSAKSFSSMASFSSVSSGGGGVLGPAFVFVV 154 (770)
Q Consensus 81 C~~~N~~p~~y~~~~~~~~------~pEL~~~~~tvey~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vFvI 154 (770)
|++.|++|++|. ++..+. ||||. ++||||++|++|+.++ +.||+|||||
T Consensus 256 C~~~N~~P~~Y~-~~~~~~~~d~~~RpEL~--~~tvEyi~p~ey~~r~----------------------p~ppvyvFvI 310 (926)
T 1m2v_B 256 CRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQ----------------------PPPATYCFLI 310 (926)
T ss_dssp TCCEEECCGGGT-TTSTTCGGGGGGSHHHH--CSEEEEECCGGGCSSC----------------------CCCCBEEEEE
T ss_pred CCCCCCCchhhc-cccccCccccccCcccc--CceEEEEcChhhccCC----------------------CCCcEEEEEE
Confidence 999999999997 455554 49999 9999999999998775 8999999999
Q ss_pred ecCcchhH---HHHHHHHHHHHhhcCCC---CcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhhhccccc
Q 004188 155 DGCMEESE---IRAVKHELLRVMEQLPE---NALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRCA 228 (770)
Q Consensus 155 D~s~~~~~---l~~~~~~i~~~l~~lp~---~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~l~v~d~ 228 (770)
|+|.++++ +++++++|+.+|+.||+ +++|||||||+.||||+++... .|+++ +.++ ++||+++|+
T Consensus 311 DvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~-------~g~k~-~~~q-~qmlvvsdl 381 (926)
T 1m2v_B 311 DVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDS-------ENNEE-SADQ-INMMDIADL 381 (926)
T ss_dssp ECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC-----------------C-CEEEEECCC
T ss_pred ECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcc-------cCCcc-cccc-hhhcccccc
Confidence 99999987 78999999999999996 6999999999999999998752 26677 6666 789999999
Q ss_pred ccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccCCCCcEEEEEecCCC
Q 004188 229 KQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTGSRIMVFTSGPA 308 (770)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gGkI~~F~sg~p 308 (770)
+++ |+|..++||+|++||++.|+++|++|++++. .++++.||+|+||++|..+|+ ..||||++|++|+|
T Consensus 382 ~d~-----f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~--~~~~~~~~~G~AL~aA~~lL~----~~GGrI~~F~sg~P 450 (926)
T 1m2v_B 382 EEP-----FLPRPNSMVVSLKACRQNIETLLTKIPQIFQ--SNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTLP 450 (926)
T ss_dssp SSC-----CCSCSSSSSEETTTTHHHHHHHHHHHHHHTS--SCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSCC
T ss_pred ccc-----cCCCcccccccHHHHHHHHHHHHHhhhhhhc--CCCCCCccHHHHHHHHHHHHH----hhCCEEEEEecCCC
Confidence 888 8887799999999999999999999999775 678999999999999999998 78999999999999
Q ss_pred CCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccccCcceeEEEe
Q 004188 309 TMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMIG 388 (770)
Q Consensus 309 t~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~~TGG~v~~~ 388 (770)
|.|||+|+.+++++ |.|++||++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|
T Consensus 451 t~GpG~l~~re~~~----~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y 526 (926)
T 1m2v_B 451 NLGIGKLQRRNESG----VVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFY 526 (926)
T ss_dssp CSSTTCCCCCCC--------CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEE
T ss_pred CCCCCccccccccc----ccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEc
Confidence 99999999998764 56777776669999999999999999999999999999999999999999999999999999
Q ss_pred CCCChh------HHHHHHHHHhccCcccccceeeeEEEEEEEcCCceEeeeecCccccccCCCCcCCCccCCCCccceee
Q 004188 389 ETFESD------QFRKCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWKL 462 (770)
Q Consensus 389 ~~f~~~------~~~~~l~~~l~~~~~~~l~~~~~a~l~vr~S~gl~v~~~~G~~~~~~k~~~~vsd~~~g~g~t~~~~l 462 (770)
++|+.+ +|.+++.+.++++ +||+|+||||||+||+|++++||++.+ ++++|++
T Consensus 527 ~~F~~~~~~d~~kf~~dl~~~Lt~~------~gf~a~mrVR~S~glkv~~~~G~~~~~---------------~s~~~~l 585 (926)
T 1m2v_B 527 PGFSGKNPNDIVKFSTEFAKHISMD------FCMETVMRARGSTGLRMSRFYGHFFNR---------------SSDLCAF 585 (926)
T ss_dssp ESCCTTSHHHHHHHHHHHHHHHHSC------CEEEEEEEEEECTTEEEEEEESSSBCS---------------STTEEEE
T ss_pred CCCcchhhhHHHHHHHHHHHHhhhh------hceeEEEEEEeCCCcEEEEeecCcccc---------------CcCceEe
Confidence 999865 5778888988886 899999999999999999999999964 3578999
Q ss_pred ecCCCCceEEEEEEeccCCcCCCCCeEEEEEEEEEEecCCcEEEEEEeccccccCCChHHHHhccCHHHHHHHHHHHHHH
Q 004188 463 NTLASKTCIAFFFQVSDEQKAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQSPEIAAGFDQEAAAAIMARLAIH 542 (770)
Q Consensus 463 ~~~~~~~si~~~f~~~~~~~l~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~vt~~~~~~v~~~~D~ea~~~llar~a~~ 542 (770)
+++++++||+|+|++++ ++. ...+|||+|++||+.+|+|||||||++++++ +++.++|+++|+||++++|+|+|+.
T Consensus 586 ~~l~~d~s~av~f~~~~--~l~-~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt-~~l~~v~~s~Dqea~~~llar~av~ 661 (926)
T 1m2v_B 586 STMPRDQSYLFEVNVDE--SIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTT-ESLAEVYASADQLAIASFYNSKAVE 661 (926)
T ss_dssp EEECSSCCEEEEEEECS--BCC-SSEEEEEEEEEEEETTTEEEEEEEEEEEEEE-SCHHHHHHTBCHHHHHHHHHHHHHH
T ss_pred eccCCCCEEEEEEEecc--CCC-CCcEEEEEEEEEEcCCCCEEEEEEeeccccc-CCHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999995 454 5789999999999999999999999999999 8999999999999999999999999
Q ss_pred HHhhCChHHHHHHHHHHHHHHHHHhcccCCCCCC-------CcccCcccccHHHHHHHhhccccCCCCCCCh-hHHHHHH
Q 004188 543 RAETCYSRDVVRWLDDTLIRFTSKFGDYVPEDPS-------SFRLSSNFSLYPQFMFYLRRSQFIDVFNCTP-DETAFFR 614 (770)
Q Consensus 543 ~~~~~~~~~~~~~l~~~l~~~~~~~~~yr~~~~~-------~l~lp~~lk~lP~~~~~L~ks~~l~~~~~s~-Der~~~~ 614 (770)
++.+++..++|+||+++|+++ |+.|||++++ +|+||++||+||+|||+|+||++|+ ++.+| |||+|++
T Consensus 662 ~~~~~~~~d~r~~L~~~li~i---l~~Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~-~~~~p~Dera~~~ 737 (926)
T 1m2v_B 662 KALNSSLDDARVLINKSVQDI---LATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASAL 737 (926)
T ss_dssp HHHHSCSHHHHHHHHHHHHHH---HHHHHHHTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHH---HHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhhC-CCCCCccHHHHHH
Confidence 999999999999999999999 8899998752 6999999999999999999999999 66666 9999999
Q ss_pred HHHhcCChHHHHHhhcccccccccC----C---------------CCcccccccccccCCeeEEEeCCcEEEEEEcCchh
Q 004188 615 LMLNREGVVGSLIMIQPTLFQYSFD----G---------------PPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIA 675 (770)
Q Consensus 615 ~~l~~~~~~~~~~~iyP~L~~~~~~----~---------------~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~ 675 (770)
++++++++.+++.||||+||+||.. + .|++++||+++|+++|+||||+|..+++|+|++++
T Consensus 738 ~~l~~~~~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~ 817 (926)
T 1m2v_B 738 NNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAV 817 (926)
T ss_dssp HHHHHSCHHHHHHHHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEECTTCC
T ss_pred HHHHcCCHHHHHHhccCeEEEeccCcccccccccccccccccccccCCcccCcHHHhccCCEEEEECCCEEEEEecCCCC
Confidence 9999999999999999999999852 2 27899999999999999999999999999999997
Q ss_pred -hHhh--CCCC----------------CCCcchhHHHHHhccHHHHHHHHHcCC--CCcEEEEEccCCC-----------
Q 004188 676 -QWKK--HGYD----------------KDPNHENLRKLLEAPETDAEQLVAERI--PAPKIIKCDQHGS----------- 723 (770)
Q Consensus 676 -~~~~--~g~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~R~--~~p~~~~~~~g~~----------- 723 (770)
+|++ .|+. +++..++++++++ .+++.|. .+|++++++|++.
T Consensus 818 p~ll~dlFg~~~~~~i~~~~~~lp~l~~~~~s~~lr~iI~-------~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~ 890 (926)
T 1m2v_B 818 PALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIIN-------QLRNHDDVITYQSLYIVRGASLSEPVNHASARE 890 (926)
T ss_dssp SGGGC-------------------------CHHHHHHHHH-------HTTCCSSCCCCCEEEEEC------------CCH
T ss_pred HHHHHHHhCCCchhhcCcccccCccCCCChHHHHHHHHHH-------HHHHhCCCCCCceEEEEecCCCCCccccccccc
Confidence 7765 2442 3445566777776 8888875 5688888876533
Q ss_pred ---hHHHHHHhhCCCCCCCCccCCCCcccccCCCcHHHHHHHHHHHHhc
Q 004188 724 ---QARFLLAKLNPSVTQDSMYKEGSDVIFTDDLSLEVFIDHLQTLAVQ 769 (770)
Q Consensus 724 ---~~r~l~~~L~~~~~~~~~~~~~~~~~~t~~~S~~~fl~~l~~~~~~ 769 (770)
.+-+|.+.|+||++ .+.+||.+||+||||+|.+
T Consensus 891 ~~~~~~~f~~~LvED~~-------------~~~~SY~dfL~~lh~~i~~ 926 (926)
T 1m2v_B 891 VATLRLWASSTLVEDKI-------------LNNESYREFLQIMKARISK 926 (926)
T ss_dssp HHHHHHHHHHTCTTSSC-------------TTCCCHHHHHHHHHHHHCC
T ss_pred hhhHHHHHHHhCeecCC-------------CCCCCHHHHHHHHHHHhhC
Confidence 22378899999863 1579999999999999864
No 7
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=1.5e-133 Score=1194.11 Aligned_cols=667 Identities=17% Similarity=0.241 Sum_probs=574.1
Q ss_pred cccCCCeeeeeccccCCCHhhhhhcCCCeeEEEccCCCC----CCCCCCCCC-CccCCCCCeeEcCceEEecCCCeEEec
Q 004188 5 ELEAIEGLRWSWNSWPSTKSDAVSLIIPLSLLHTPLMQS----SEIPVLPYD-PLICSKCGAVLNPYGRVDYASRIWTCP 79 (770)
Q Consensus 5 ~~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~----~~ip~~~~~-p~RC~~C~ayiNp~~~~~~~~~~w~C~ 79 (770)
-||+|+|||+|||+||.|++++++++||||++|+||++. +++|+++++ |+||++|+|||||||+|+++|++|+||
T Consensus 59 ~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~~~g~~W~C~ 138 (810)
T 1pcx_A 59 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 138 (810)
T ss_dssp GSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 389999999999999999999999999999999999975 357887774 999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCCC------CccccCCCceEEEEecCCCCCCCCCCccccccccccccCCCCCCCCCCcEEEEE
Q 004188 80 FCYGKNPFPRSYSSIAETNL------PAELFPTYSSVEYAAAHDHLPNTLGSAKSFSSMASFSSVSSGGGGVLGPAFVFV 153 (770)
Q Consensus 80 ~C~~~N~~p~~y~~~~~~~~------~pEL~~~~~tvey~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vFv 153 (770)
||++.|++|++|. +++.+. ||||. ++||||++|++|+.++ +.||+|+||
T Consensus 139 ~C~~~N~~P~~y~-~~~~~~~~d~~~RpEL~--~~tvEy~~p~~y~~~~----------------------p~pp~yvFv 193 (810)
T 1pcx_A 139 FCRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQ----------------------PPPATYCFL 193 (810)
T ss_dssp TTCCEEECCGGGG-C-----CCCGGGSHHHH--CSEEEEECCGGGCSSC----------------------CCCCEEEEE
T ss_pred CCCCcCCCchhhc-cccccCccccccCcccc--CceEEEEcCchhccCC----------------------CCCcEEEEE
Confidence 9999999999996 454444 49998 9999999999998775 899999999
Q ss_pred EecCcchhH---HHHHHHHHHHHhhcCCC---CcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhhhcccc
Q 004188 154 VDGCMEESE---IRAVKHELLRVMEQLPE---NALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLMGIRC 227 (770)
Q Consensus 154 ID~s~~~~~---l~~~~~~i~~~l~~lp~---~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~l~v~d 227 (770)
||+|.++++ +++++++|+++|+.||+ +++|||||||+.||||+++... .|++++ .+| ++||+++|
T Consensus 194 IDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~-------~g~k~~-~~q-~~mlvv~d 264 (810)
T 1pcx_A 194 IDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDS-------ENNEES-ADQ-INMMDIAD 264 (810)
T ss_dssp EECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGG-------GC---------CEEECCCC
T ss_pred EECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccc-------cCcccc-ccc-hhhccccc
Confidence 999999976 78999999999999997 7999999999999999998642 266775 345 78999999
Q ss_pred cccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccCCCCcEEEEEecCC
Q 004188 228 AKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTGSRIMVFTSGP 307 (770)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gGkI~~F~sg~ 307 (770)
++++ |+|..++||+|++||++.|+++|++|++++. .++++.||+|+||++|..+|+ ..||||++|++|+
T Consensus 265 l~d~-----f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~--~~~~~~~a~G~AL~~A~~lL~----~~GGrI~~F~sg~ 333 (810)
T 1pcx_A 265 LEEP-----FLPRPNSMVVSLKACRQNIETLLTKIPQIFQ--SNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTL 333 (810)
T ss_dssp TTCC----------TTTSEETTTTHHHHHHHHHHHHHHTT--TCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSC
T ss_pred cccc-----cCCCcccccccHHHHHHHHHHHHHhhhhhcc--CCCCCCccHHHHHHHHHHHHH----hcCCEEEEEecCC
Confidence 9887 7887799999999999999999999999774 678999999999999999998 7899999999999
Q ss_pred CCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccccCcceeEEE
Q 004188 308 ATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEKSGGFIMI 387 (770)
Q Consensus 308 pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~~TGG~v~~ 387 (770)
||.|||+|+.+++++ |.|++|+++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++
T Consensus 334 pt~GpG~l~~r~~~~----~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~ 409 (810)
T 1pcx_A 334 PNLGIGKLQRRNESG----VVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHF 409 (810)
T ss_dssp CCSSTTCCCC------------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEE
T ss_pred CCCCCCccccccccc----ccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEE
Confidence 999999999998764 5677888777999999999999999999999999999999999999999999999999999
Q ss_pred eCCCChh------HHHHHHHHHhccCcccccceeeeEEEEEEEcCCceEeeeecCccccccCCCCcCCCccCCCCcccee
Q 004188 388 GETFESD------QFRKCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALGPCVSLKKKNNLVSDSETGEGGTYMWK 461 (770)
Q Consensus 388 ~~~f~~~------~~~~~l~~~l~~~~~~~l~~~~~a~l~vr~S~gl~v~~~~G~~~~~~k~~~~vsd~~~g~g~t~~~~ 461 (770)
|++|+.+ +|.+++.+.++++ +||+|+||||||+||+|++++||++.+ +++.|+
T Consensus 410 y~~F~~~~~~d~~~f~~dl~~~l~~~------~gf~a~mrVR~S~gl~v~~~~G~~~~~---------------~~~~~~ 468 (810)
T 1pcx_A 410 YPGFSGKNPNDIVKFSTEFAKHISMD------FCMETVMRARGSTGLRMSRFYGHFFNR---------------SSDLCA 468 (810)
T ss_dssp EETCCTTSHHHHHHHHHHHHHHHHCC------CCEEEEEEEEECTTEEEEEEESSSBCS---------------SSSEEE
T ss_pred cCCCcchhhHHHHHHHHHHHHHhhhh------cceeEEEEEEcCCCeEEEEeecCcccc---------------CcCceE
Confidence 9999865 6788888999886 899999999999999999999999974 357899
Q ss_pred eecCCCCceEEEEEEeccCCcCCCCCeEEEEEEEEEEecCCcEEEEEEeccccccCCChHHHHhccCHHHHHHHHHHHHH
Q 004188 462 LNTLASKTCIAFFFQVSDEQKAQPGSAFFIQFITRYRHGNMNIRKRVTTAARRWVGKQSPEIAAGFDQEAAAAIMARLAI 541 (770)
Q Consensus 462 l~~~~~~~si~~~f~~~~~~~l~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~vt~~~~~~v~~~~D~ea~~~llar~a~ 541 (770)
++++++++||+|+|++++ +++ ...+|||+|++||+.+|+|||||||++++++ +++.++|+++|+||++++|||+|+
T Consensus 469 l~~~~~d~s~~v~f~~~~--~l~-~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt-~~~~~v~~~~Dqea~~~llar~av 544 (810)
T 1pcx_A 469 FSTMPRDQSYLFEVNVDE--SIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTT-ESLAEVYASADQLAIASFYNSKAV 544 (810)
T ss_dssp ESSCCSSCCEEEEEEECS--CCC-SSEEEEEEEEEEECTTSCEEEEEEEEEEEEE-SCHHHHHHTBCHHHHHHHHHHHHH
T ss_pred eecCCCCCEEEEEEEecc--CCC-CCcEEEEEEEEEEcCCCCEEEEEEecCcccc-CCHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999995 454 5789999999999999999999999999999 899999999999999999999999
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHHhcccCCCCC-------CCcccCcccccHHHHHHHhhccccCCCCCCCh-hHHHHH
Q 004188 542 HRAETCYSRDVVRWLDDTLIRFTSKFGDYVPEDP-------SSFRLSSNFSLYPQFMFYLRRSQFIDVFNCTP-DETAFF 613 (770)
Q Consensus 542 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~yr~~~~-------~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~s~-Der~~~ 613 (770)
.++.+++..++|+||+++|+++ |+.|||+++ ++|+||++||+||+|||+|+||++|+ ++.+| |||+|+
T Consensus 545 ~~~~~~~~~d~r~~l~~~li~i---l~~Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~~l~-~~~~p~Der~~~ 620 (810)
T 1pcx_A 545 EKALNSSLDDARVLINKSVQDI---LATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASA 620 (810)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH---HHHHHHHCC----CCSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHH---HHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhcC-CCCCCccHHHHH
Confidence 9999999999999999999999 889999875 36999999999999999999999999 66666 999999
Q ss_pred HHHHhcCChHHHHHhhcccccccccC----C---------------CCcccccccccccCCeeEEEeCCcEEEEEEcCch
Q 004188 614 RLMLNREGVVGSLIMIQPTLFQYSFD----G---------------PPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKI 674 (770)
Q Consensus 614 ~~~l~~~~~~~~~~~iyP~L~~~~~~----~---------------~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v 674 (770)
+++++++++.+++.||||+||+||.. + .|++++||.+.|+++|+||||+|..+++|+|+++
T Consensus 621 ~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~ 700 (810)
T 1pcx_A 621 LNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDA 700 (810)
T ss_dssp HHHHHHSCHHHHHHHHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECSSEEEEEECTTC
T ss_pred HHHHHcCCHHHHHHhccCEEEEeccCcccccccccccccccccccccCCcccCCHHHhCcCCEEEEECCCEEEEEeCCCC
Confidence 99999999999999999999999852 2 2788999999999999999999999999999999
Q ss_pred h-hHhh--CCCC----------------CCCcchhHHHHHhccHHHHHHHHHcCC--CCcEEEEEccCCC----------
Q 004188 675 A-QWKK--HGYD----------------KDPNHENLRKLLEAPETDAEQLVAERI--PAPKIIKCDQHGS---------- 723 (770)
Q Consensus 675 ~-~~~~--~g~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~R~--~~p~~~~~~~g~~---------- 723 (770)
+ +|++ .|++ +++..++++++++ .+++.|. .+|++++++|++.
T Consensus 701 ~~~l~~~lFg~~~~~~~~~~~~~lp~~~~~~~~~~l~~iI~-------~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~ 773 (810)
T 1pcx_A 701 VPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIIN-------QLRNHDDVITYQSLYIVRGASLSEPVNHASAR 773 (810)
T ss_dssp CHHHHHHHHSCSCGGGSCCEECCCCCCSSCHHHHHHHHHHH-------HHHCCSSCCCCCEEEEEECCCTTCCCCHHHHH
T ss_pred CHHHHHHHhCCCchhhcCcccccCCcCCCChHHHHHHHHHH-------HHHHhCCCCCCceEEEEecCCCCCcccccccc
Confidence 7 7765 2542 3344567777776 8998885 6788888977643
Q ss_pred ----hHHHHHHhhCCCCCCCCccCCCCcccccCCCcHHHHHHHHHHHHhc
Q 004188 724 ----QARFLLAKLNPSVTQDSMYKEGSDVIFTDDLSLEVFIDHLQTLAVQ 769 (770)
Q Consensus 724 ----~~r~l~~~L~~~~~~~~~~~~~~~~~~t~~~S~~~fl~~l~~~~~~ 769 (770)
.+-+|.+.|+||++ .+.+||.+||+||||+|.+
T Consensus 774 ~~~~~~~~f~~~LvED~~-------------~~~~SY~~fL~~lh~~i~~ 810 (810)
T 1pcx_A 774 EVATLRLWASSTLVEDKI-------------LNNESYREFLQIMKARISK 810 (810)
T ss_dssp HHHHHHHHHHTTCTTSCB-------------TTBCCHHHHHHHHHHHTCC
T ss_pred chhhHHHHHHHhCeecCC-------------CCCCCHHHHHHHHHHHhhC
Confidence 23478899999863 1579999999999999864
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.62 E-value=7e-17 Score=125.58 Aligned_cols=52 Identities=50% Similarity=1.140 Sum_probs=47.0
Q ss_pred CCCCCccCCC--CCeeEcCceEEecCCCeEEecCCCCCCCCCcCCCCCCCCCCC
Q 004188 49 LPYDPLICSK--CGAVLNPYGRVDYASRIWTCPFCYGKNPFPRSYSSIAETNLP 100 (770)
Q Consensus 49 ~~~~p~RC~~--C~ayiNp~~~~~~~~~~w~C~~C~~~N~~p~~y~~~~~~~~~ 100 (770)
.+++|+||++ |+||||||++|+.++++|+|+||+..|++|++|..++++++|
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~nlP 58 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP 58 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHHSC
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCcccCC
Confidence 3568999999 999999999999999999999999999999999877766654
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.18 E-value=3.3e-08 Score=111.03 Aligned_cols=313 Identities=12% Similarity=0.077 Sum_probs=192.4
Q ss_pred CCcEEEEEEecCcchh----HHHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhh
Q 004188 146 LGPAFVFVVDGCMEES----EIRAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQH 221 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~----~l~~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~ 221 (770)
.+..++||||+|.++. .++.+++++...++.|+++.+||||+|++....+--..
T Consensus 76 ~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t---------------------- 133 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTG---------------------- 133 (464)
T ss_dssp CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSS----------------------
T ss_pred CCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCC----------------------
Confidence 3456999999999987 38999999999999999999999999998776531100
Q ss_pred hhcccccccccCCCCCCCCCCcceEec-hhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccCCCCcEE
Q 004188 222 LMGIRCAKQHQLGKTPVIQKQGFLLPV-SECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTGSRI 300 (770)
Q Consensus 222 ~l~v~d~~~~~~~~~~~~~~~~~l~~~-~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gGkI 300 (770)
..+.+. ...+..+...|+.|.. ...+.++.||..|..++.. .+.....|
T Consensus 134 ---------------------~~l~~~~~~~~~~l~~~I~~L~~--------~GgT~l~~aL~~A~~~l~~-~~~~~~~I 183 (464)
T 4fx5_A 134 ---------------------GQLLRADYQSRAAAKEAVGRLHA--------NGGTAMGRWLAQAGRIFDT-APSAIKHA 183 (464)
T ss_dssp ---------------------SSCEECSHHHHHHHHHHHHTCCC--------CSCCCHHHHHHHHHHHHTT-CTTSEEEE
T ss_pred ---------------------cccccCCHHHHHHHHHHHHcCCC--------CCCCcHHHHHHHHHHHHhc-CCCCCCEE
Confidence 001111 1223445555555542 2357899999999999973 22334678
Q ss_pred EEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccccC
Q 004188 301 MVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEK 380 (770)
Q Consensus 301 ~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~~ 380 (770)
+++++|.++.+.. ..... +.++...+|.|..|.++. ..+-..|..++..
T Consensus 184 ILLTDG~~~~~~~----------------------------~~l~~--~~~a~~~~i~i~tiGiG~-~~d~~~L~~IA~~ 232 (464)
T 4fx5_A 184 ILLTDGKDESETP----------------------------ADLAR--AIQSSIGNFTADCRGIGE-DWEPKELRKIADA 232 (464)
T ss_dssp EEEESSCCTTSCH----------------------------HHHHH--HHHHHTTTCEEEEEEESS-SSCHHHHHHHHHH
T ss_pred EEEcCCCCCCCCh----------------------------HHHHH--HHHHhcCCCeEEEEEeCC-ccCHHHHHHHHHh
Confidence 9999987664210 01111 223446788888887764 4677889999999
Q ss_pred cceeEEEeCCCCh--hHHHHHHHHHhccCcccccceeeeEEEEEEEcCCceEeeeec--CccccccCCCCcCCCccC--C
Q 004188 381 SGGFIMIGETFES--DQFRKCMRHIFGHDEEGNLKMYFDATIEVVTTRDIKICGALG--PCVSLKKKNNLVSDSETG--E 454 (770)
Q Consensus 381 TGG~v~~~~~f~~--~~~~~~l~~~l~~~~~~~l~~~~~a~l~vr~S~gl~v~~~~G--~~~~~~k~~~~vsd~~~g--~ 454 (770)
|||..++.++... ..|.+.+.+.... ..-++.+++++.+|+.+..+.. |.... +.....+ .
T Consensus 233 tgG~~~~v~d~~~L~~~f~~i~~~~~s~-------~~~dv~l~l~~~~g~~v~~v~~v~P~~~~------l~~~~~~~~~ 299 (464)
T 4fx5_A 233 LLGTVGIIRDPATLAEDFREMTAKSMGK-------EVADVALRLWAPKGATIRYVKQVSPNLAD------LSGMRVPGDN 299 (464)
T ss_dssp TTCCEEEESSGGGHHHHHHHHHHHHHTC-------CEEEEEEEEECCTTCEEEEEEEEESBCEE------CGGGCEECSS
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhhch-------heeeeEEEEEeCCCcEEEEEEeecccccc------cCcccccCCC
Confidence 9999888887653 2355555554433 6789999999999998875532 21110 0000011 1
Q ss_pred CCccceeeecCCCCceEEEEEEeccCCcCCCCCeEE-EEEEEEEEecCCcEEEEEEeccccccCCChHHHHhccCHHHH-
Q 004188 455 GGTYMWKLNTLASKTCIAFFFQVSDEQKAQPGSAFF-IQFITRYRHGNMNIRKRVTTAARRWVGKQSPEIAAGFDQEAA- 532 (770)
Q Consensus 455 g~t~~~~l~~~~~~~si~~~f~~~~~~~l~~~~~~~-iQ~al~Yt~~~G~rriRV~T~~~~vt~~~~~~v~~~~D~ea~- 532 (770)
|....+.++.+ .+.+=.|.+++.-+. .+.+.... .|+.+.|.++.|++.+.=..+...++ .+.. .-...|+++.
T Consensus 300 ~~~~~v~lG~l-~~e~r~~lv~l~v~~-~~~g~~~~~~~v~~~y~~~~~~~~~~~~~v~~~~~-~~~~-~~~~~~~~V~~ 375 (464)
T 4fx5_A 300 PLTGDYPTGAW-GAESREYHICVEVEP-GNIGQEKLAGRVQLVAKDAGGATLLGEGKIRAVWT-EDTD-LSTRINGRVAH 375 (464)
T ss_dssp TTEEEEEEEEE-SSEEEEEEEEEECCC-CCTTCEEEEEEEEEEEEETTEEEEEEEEEEEEEEC-SCHH-HHSCCCHHHHH
T ss_pred CcEEEEECCcC-CCCeEEEEEEEEcCC-CCCCceeEEEEEEEEEcCCCccccccccceEEEEE-cccc-ccCCCCHHHHH
Confidence 23567888998 777766666665321 22344444 79999999998873222223344444 3221 2233444443
Q ss_pred -------HHHHHHHHHHHHhhCChHHHHHHHHHH
Q 004188 533 -------AAIMARLAIHRAETCYSRDVVRWLDDT 559 (770)
Q Consensus 533 -------~~llar~a~~~~~~~~~~~~~~~l~~~ 559 (770)
+-.+ +.+......+....+...|...
T Consensus 376 ~~~~~~~a~~~-~~a~~~~~~gd~~~A~~~L~~A 408 (464)
T 4fx5_A 376 YTGQAEMAAAI-QEGLDAQAAGDLDTATARLGRA 408 (464)
T ss_dssp HHHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHH
Confidence 2222 2344555556666666555543
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=3.3e-07 Score=91.98 Aligned_cols=170 Identities=15% Similarity=0.217 Sum_probs=120.8
Q ss_pred CCCcEEEEEEecCcchh-------HHHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChH
Q 004188 145 VLGPAFVFVVDGCMEES-------EIRAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSE 217 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~-------~l~~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~ 217 (770)
..+..++||||+|.++. .++.+++.+...++.++ +.+||+|+|++..+..-
T Consensus 9 ~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~--------------------- 66 (218)
T 3ibs_A 9 RKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQL--------------------- 66 (218)
T ss_dssp -CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEE---------------------
T ss_pred cCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeC---------------------
Confidence 56678999999999975 58899999999999997 77999999997654320
Q ss_pred hhhhhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccCCCC
Q 004188 218 QIQHLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTG 297 (770)
Q Consensus 218 ~~~~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~g 297 (770)
|+......+..+|+.|..... ....+.++.||..|...+... +...
T Consensus 67 -----------------------------~~~~~~~~~~~~l~~l~~~~~----~~g~T~l~~al~~a~~~l~~~-~~~~ 112 (218)
T 3ibs_A 67 -----------------------------PITSDYISAKMFLESISPSLI----SKQGTAIGEAINLATRSFTPQ-EGVG 112 (218)
T ss_dssp -----------------------------EEESCHHHHHHHHHTCCGGGC----CSCSCCHHHHHHHHHTTSCSC-SSCC
T ss_pred -----------------------------CCCCCHHHHHHHHHhcCcccC----CCCCCcHHHHHHHHHHHHhhC-CCCC
Confidence 111123455667777765321 124578999999999988732 2345
Q ss_pred cEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCC----------
Q 004188 298 SRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLD---------- 367 (770)
Q Consensus 298 GkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~---------- 367 (770)
..|++++.|.++.| -..+.+..+.+.||.|..+.++.+
T Consensus 113 ~~ivllTDG~~~~~--------------------------------~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~ 160 (218)
T 3ibs_A 113 RAIIVITDGENHEG--------------------------------GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGT 160 (218)
T ss_dssp EEEEEEECCTTCCS--------------------------------CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTS
T ss_pred cEEEEEcCCCCCCC--------------------------------cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCC
Confidence 68888898876644 013456777889999999888764
Q ss_pred --------------ccCcccccccccCcceeEEEeCCCCh--hHHHHHHHH
Q 004188 368 --------------QVGVAELKVPVEKSGGFIMIGETFES--DQFRKCMRH 402 (770)
Q Consensus 368 --------------~~~l~~~~~l~~~TGG~v~~~~~f~~--~~~~~~l~~ 402 (770)
..+-..|..+|..|||..++..+-.. ..+.+.+.+
T Consensus 161 ~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~ 211 (218)
T 3ibs_A 161 NDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISK 211 (218)
T ss_dssp SCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHH
T ss_pred CceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHH
Confidence 46677899999999999888776332 234444443
No 11
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.27 E-value=1.6e-05 Score=80.12 Aligned_cols=164 Identities=16% Similarity=0.060 Sum_probs=106.4
Q ss_pred CCCcEEEEEEecCcchhHHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhh
Q 004188 145 VLGPAFVFVVDGCMEESEIRAVKHELLRVMEQLP---ENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQH 221 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~~l~~~~~~i~~~l~~lp---~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~ 221 (770)
+.+.-.+||||.|.++..++.+++.+...++.+. ++.+||+|+|++.++..-
T Consensus 20 ~~~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~------------------------- 74 (223)
T 2b2x_A 20 STQLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF------------------------- 74 (223)
T ss_dssp --CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEE-------------------------
T ss_pred CCcceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEE-------------------------
Confidence 3456799999999998888899999999998874 689999999998765420
Q ss_pred hhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHH-hhc---ccCCCC
Q 004188 222 LMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGL-LEG---CSVNTG 297 (770)
Q Consensus 222 ~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~l-l~~---~~~~~g 297 (770)
.+.+. . ... .+++.|..+.. .....+.+|.||..|... +.. ......
T Consensus 75 --~l~~~--------------------~-~~~---~~~~~i~~l~~---~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~ 125 (223)
T 2b2x_A 75 --NLNKY--------------------S-STE---EVLVAANKIVQ---RGGRQTMTALGIDTARKEAFTEARGARRGVK 125 (223)
T ss_dssp --CTTTC--------------------C-SHH---HHHHHHTTCCC---CCCSSCCHHHHHHHHHHTTSSGGGTCCTTSE
T ss_pred --ecCCC--------------------C-CHH---HHHHHHHhhhc---cCCCCccHHHHHHHHHHHhcCcccCCCCCCC
Confidence 00000 0 112 23333433321 111247899999999986 331 111223
Q ss_pred cEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCcc--------
Q 004188 298 SRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQV-------- 369 (770)
Q Consensus 298 GkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~-------- 369 (770)
..|+++++|.++.|. -..+.+..+.+.||.|..+.++.+.-
T Consensus 126 ~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~ 174 (223)
T 2b2x_A 126 KVMVIVTDGESHDNY-------------------------------RLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEK 174 (223)
T ss_dssp EEEEEEESSCCTTGG-------------------------------GHHHHHHHHHTTTEEEEEEEECGGGC---CCCHH
T ss_pred eEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecCccccccccchh
Confidence 458888888765431 02345667778898877776654321
Q ss_pred CcccccccccC-cceeEEEeCCCCh
Q 004188 370 GVAELKVPVEK-SGGFIMIGETFES 393 (770)
Q Consensus 370 ~l~~~~~l~~~-TGG~v~~~~~f~~ 393 (770)
...+|..+|.. |||.+|..++++.
T Consensus 175 ~~~~L~~iA~~p~~g~~~~~~~~~~ 199 (223)
T 2b2x_A 175 FVEEIKSIASEPTEKHFFNVSDELA 199 (223)
T ss_dssp HHHHHHTTSCSSGGGTEEEESSTTG
T ss_pred HHHHHHHHhCCCchhcEEEeCCHHH
Confidence 03788999998 9999999887754
No 12
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.25 E-value=2.6e-05 Score=77.09 Aligned_cols=163 Identities=17% Similarity=0.085 Sum_probs=106.6
Q ss_pred CCcEEEEEEecCcchhHHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhh
Q 004188 146 LGPAFVFVVDGCMEESEIRAVKHELLRVMEQLP---ENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHL 222 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~~l~~~~~~i~~~l~~lp---~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~ 222 (770)
.+.-.+||||+|.++..++.+++.+...++.+. ++.+||+|+|++..+..-
T Consensus 5 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~-------------------------- 58 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVF-------------------------- 58 (200)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEE--------------------------
T ss_pred CcccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEE--------------------------
Confidence 456789999999988778899999999998885 689999999998765320
Q ss_pred hcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHH-hhcc---cCCCCc
Q 004188 223 MGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGL-LEGC---SVNTGS 298 (770)
Q Consensus 223 l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~l-l~~~---~~~~gG 298 (770)
.+.+. ..+..+.+.|+.++... ...+.+|.||..|... +... ......
T Consensus 59 -~l~~~---------------------~~~~~~~~~i~~l~~~~------G~~T~~~~al~~a~~~~~~~~~g~r~~~~~ 110 (200)
T 1v7p_C 59 -NLNTY---------------------KTKEEMIVATSQTSQYG------GDLTNTFGAIQYARKYAYSAASGGRRSATK 110 (200)
T ss_dssp -CTTTC---------------------SSHHHHHHHHHHCCCCC------CSCCCHHHHHHHHHHHTTSGGGTCCTTSEE
T ss_pred -eCCCc---------------------CCHHHHHHHHHhhhccC------CCCCcHHHHHHHHHHhhcccccCCCCCCCe
Confidence 00000 01233444555544211 1247899999999985 5421 012233
Q ss_pred EEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecC----CccC----
Q 004188 299 RIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSL----DQVG---- 370 (770)
Q Consensus 299 kI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~----~~~~---- 370 (770)
.|++++.|.++.+. -..+.+..+.+.||.|..+.++. ..++
T Consensus 111 ~ivllTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~ 159 (200)
T 1v7p_C 111 VMVVVTDGESHDGS-------------------------------MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNL 159 (200)
T ss_dssp EEEEEESSCCSCGG-------------------------------GHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHH
T ss_pred EEEEEccCCCCCcc-------------------------------cHHHHHHHHHHCCCEEEEEEecccccccccchhhH
Confidence 58888988665210 02345667778899877776632 2344
Q ss_pred cccccccccCccee-EEEeCCCCh
Q 004188 371 VAELKVPVEKSGGF-IMIGETFES 393 (770)
Q Consensus 371 l~~~~~l~~~TGG~-v~~~~~f~~ 393 (770)
..+|..+|..|||. +|..++++.
T Consensus 160 ~~~L~~iA~~~~g~~~~~~~~~~~ 183 (200)
T 1v7p_C 160 IKEIKAIASIPTERYFFNVSDEAA 183 (200)
T ss_dssp HHHHHHHSCSSHHHHEEEESSSGG
T ss_pred HHHHHHHhCCccHhcEEEcCCHHH
Confidence 46799999999885 566777754
No 13
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.6e-06 Score=86.67 Aligned_cols=147 Identities=15% Similarity=0.092 Sum_probs=102.5
Q ss_pred EEEEEEecCcchh-------HHHHHHHHHHHHhhc---CCCCcEEEEEEECC-EEEEEEcCCCCceeeeeecCCccCChH
Q 004188 149 AFVFVVDGCMEES-------EIRAVKHELLRVMEQ---LPENALVGLVVFDS-MVYVHDLGFSECCRVLVFHGGRELSSE 217 (770)
Q Consensus 149 ~~vFvID~s~~~~-------~l~~~~~~i~~~l~~---lp~~~~VglITf~~-~V~~y~l~~~~~~~~~v~~g~~~~~~~ 217 (770)
+.|||||+|.++. ++++.++++...++. ..+..+||||||.. ...++
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl---------------------- 62 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL---------------------- 62 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec----------------------
Confidence 5799999999974 477888877766663 45678999999963 11111
Q ss_pred hhhhhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccC-CC
Q 004188 218 QIQHLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSV-NT 296 (770)
Q Consensus 218 ~~~~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~-~~ 296 (770)
.|+...+..+...|+.|+.. ..+.++.||+.|..+|+.... ..
T Consensus 63 ----------------------------~plT~D~~~il~aL~~l~~~--------G~T~l~~gL~~A~~aLk~~~~k~~ 106 (268)
T 4b4t_W 63 ----------------------------STFTAEFGKILAGLHDTQIE--------GKLHMATALQIAQLTLKHRQNKVQ 106 (268)
T ss_dssp ----------------------------EEEESCHHHHHHHHTTCCCC--------SCCCHHHHHHHHHHHHHTCSCTTS
T ss_pred ----------------------------cCCcchHHHHHHHhhhcCcC--------CCCChHHHHHHHHHHHHhcccCCC
Confidence 12222334556666665432 347899999999999984332 22
Q ss_pred CcEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccc
Q 004188 297 GSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKV 376 (770)
Q Consensus 297 gGkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~ 376 (770)
.-||++|++|+-+. ..+-..++++++.++||.||++.++.+..+-..|..
T Consensus 107 ~~rIIlf~ds~~~~------------------------------~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~ 156 (268)
T 4b4t_W 107 HQRIVAFVCSPISD------------------------------SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDE 156 (268)
T ss_dssp EEEEEEEECSCCSS------------------------------CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHH
T ss_pred ceEEEEEECCCCCC------------------------------CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHH
Confidence 34899999874211 123457899999999999999999987667777888
Q ss_pred cccCcce
Q 004188 377 PVEKSGG 383 (770)
Q Consensus 377 l~~~TGG 383 (770)
+++..+|
T Consensus 157 l~~~~Ng 163 (268)
T 4b4t_W 157 FIAAVNN 163 (268)
T ss_dssp HHHHHCS
T ss_pred HHHHhcC
Confidence 8776655
No 14
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.24 E-value=1.8e-05 Score=79.32 Aligned_cols=174 Identities=17% Similarity=0.162 Sum_probs=105.6
Q ss_pred CCCcEEEEEEecCcchhH--HHHHHHHHHHHhhcC---CCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhh
Q 004188 145 VLGPAFVFVVDGCMEESE--IRAVKHELLRVMEQL---PENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQI 219 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~~--l~~~~~~i~~~l~~l---p~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~ 219 (770)
..+.-++||||.|.++.. ++.+++.+...++.+ +++.+||+|+|++.++..-
T Consensus 13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~----------------------- 69 (223)
T 1q0p_A 13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV----------------------- 69 (223)
T ss_dssp --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE-----------------------
T ss_pred CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee-----------------------
Confidence 356789999999998754 777888877776554 5578999999998775431
Q ss_pred hhhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccC-----
Q 004188 220 QHLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSV----- 294 (770)
Q Consensus 220 ~~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~----- 294 (770)
.+.+ +....+..+...|+.|+... ......+.+|.||..|...+.....
T Consensus 70 ----~~~~-------------------~~~~~~~~~~~~i~~l~~~~---~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~ 123 (223)
T 1q0p_A 70 ----KVSE-------------------ADSSNADWVTKQLNEINYED---HKLKSGTNTKKALQAVYSMMSWPDDVPPEG 123 (223)
T ss_dssp ----CTTS-------------------GGGGCHHHHHHHHHTCCTTS---CSCTTCCCHHHHHHHHHHHHCCTTSSCCTT
T ss_pred ----cccc-------------------CCCCCHHHHHHHHHhccccc---ccCCCCccHHHHHHHHHHHhhccccccccc
Confidence 0000 11112344556666665431 1124568999999999998873211
Q ss_pred --CCCcEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHH------HHHHHhCCcEEEEEeecC
Q 004188 295 --NTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQL------SDRLIKSSIVLDLFACSL 366 (770)
Q Consensus 295 --~~gGkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~l------a~~~~~~~isvdlf~~~~ 366 (770)
.....|++++.|.++.|.- ... ..+-.+++ +..+.+.||.|..+.++.
T Consensus 124 ~~~~~~~iillTDG~~~~g~~---~~~---------------------~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~ 179 (223)
T 1q0p_A 124 WNRTRHVIILMTDGLHNMGGD---PIT---------------------VIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP 179 (223)
T ss_dssp GGGCEEEEEEEECSCCCSSSC---THH---------------------HHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS
T ss_pred cccCCeEEEEECCCCCCCCCC---hHH---------------------HHHHHHHHHhhhhhhhhcccCCcEEEEEEecC
Confidence 1223588999998887631 000 00001111 022234566665555543
Q ss_pred CccCcccccccccCcce--eEEEeCCCC
Q 004188 367 DQVGVAELKVPVEKSGG--FIMIGETFE 392 (770)
Q Consensus 367 ~~~~l~~~~~l~~~TGG--~v~~~~~f~ 392 (770)
.++..+|..++..||| .+|..+++.
T Consensus 180 -~~~~~~L~~iA~~~~G~~~~~~~~~~~ 206 (223)
T 1q0p_A 180 -LVNQVNINALASKKDNEQHVFKVKDME 206 (223)
T ss_dssp -CCCHHHHHHHSCCCTTCCCEEETTC--
T ss_pred -cCCHHHHHHHhcCCCCCceEEEcCCHH
Confidence 4678889999999999 777777653
No 15
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.20 E-value=6e-07 Score=88.05 Aligned_cols=177 Identities=9% Similarity=0.091 Sum_probs=104.0
Q ss_pred CCCcEEEEEEecCcchh--HHHHHHHHHHHHhhcC-CCCcEEEEEEECC-EEEEEEcCCCCceeeeeecCCccCChHhhh
Q 004188 145 VLGPAFVFVVDGCMEES--EIRAVKHELLRVMEQL-PENALVGLVVFDS-MVYVHDLGFSECCRVLVFHGGRELSSEQIQ 220 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~--~l~~~~~~i~~~l~~l-p~~~~VglITf~~-~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~ 220 (770)
..|..++||||+|.++. .++.+++++...++.+ +++.+||+|+|++ ..++
T Consensus 3 ~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~-------------------------- 56 (189)
T 2x31_A 3 MSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQV-------------------------- 56 (189)
T ss_dssp SSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCB--------------------------
T ss_pred CCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceE--------------------------
Confidence 34567899999999873 4788899999888777 8889999999985 2100
Q ss_pred hhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhccc-CCCCcE
Q 004188 221 HLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCS-VNTGSR 299 (770)
Q Consensus 221 ~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~~~gGk 299 (770)
. .| .......+...|+.+... ..+.++.||..|..++.... +.....
T Consensus 57 ---~-------------~~--------~~~~~~~~~~~i~~l~~~--------g~T~~~~al~~a~~~l~~~~~~~~~~~ 104 (189)
T 2x31_A 57 ---L-------------LQ--------PSRSLTQTKRQLQGLPGG--------GGTPLASGMEMAMVTAKQARSRGMTPT 104 (189)
T ss_dssp ---C-------------TT--------TCSCHHHHHHHHHHCCCC--------BCCCCHHHHHHHHHHHHTCTTTCSSEE
T ss_pred ---e-------------cC--------CCCCHHHHHHHHhcCCCC--------CCCCHHHHHHHHHHHHHhccCCCCceE
Confidence 0 01 011233455566655432 34689999999999987321 123568
Q ss_pred EEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCccccccccc
Q 004188 300 IMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVE 379 (770)
Q Consensus 300 I~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~ 379 (770)
|++++.|.++.|+..-...+. .. .++. +++..+.+.||.|..+.++.. +...|..++.
T Consensus 105 ivliTDG~~~~~~~~~~~~~~---~~--~~~~---------------~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~ 162 (189)
T 2x31_A 105 IALLTDGRGNIALDGTANREL---AG--EQAT---------------KVARAIRASGMPAVIIDTAMR--PNPALVDLAR 162 (189)
T ss_dssp EEECCBSCCSSCCTHHHHHGG---GT--CCCE---------------EEEECTGGGGSCCTHHHHHHS--SCSSSCSTTT
T ss_pred EEEECCCCCCCCCCccccccc---hh--HHHH---------------HHHHHHHHcCCeEEEEecCCC--CHHHHHHHHH
Confidence 899999999987641110000 00 0000 001111233443333333322 6778999999
Q ss_pred CcceeEEEeCCCChhHHHHHHH
Q 004188 380 KSGGFIMIGETFESDQFRKCMR 401 (770)
Q Consensus 380 ~TGG~v~~~~~f~~~~~~~~l~ 401 (770)
.|||..++.++...+.|.+.+.
T Consensus 163 ~~~G~~~~~~~~~~~~~~~~~~ 184 (189)
T 2x31_A 163 TMDAHYIALPRATAHKMADVLG 184 (189)
T ss_dssp EEEESSTTTHHHHHHHHHHHHH
T ss_pred hcCCeEEECCCcchHHHHHHHH
Confidence 9999865554433334444443
No 16
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.20 E-value=3.8e-05 Score=76.09 Aligned_cols=164 Identities=10% Similarity=0.127 Sum_probs=106.0
Q ss_pred CCcEEEEEEecCcchh--HHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhh
Q 004188 146 LGPAFVFVVDGCMEES--EIRAVKHELLRVMEQLP---ENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQ 220 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~--~l~~~~~~i~~~l~~lp---~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~ 220 (770)
.+.-.+||||.|.+.. .++.+++.++..++.++ ++.|||+|+|++..+..-
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~------------------------ 67 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYI------------------------ 67 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEE------------------------
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEE------------------------
Confidence 3567999999999864 48899999999999886 578999999998765420
Q ss_pred hhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHH-HHhhccc-CCCCc
Q 004188 221 HLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAV-GLLEGCS-VNTGS 298 (770)
Q Consensus 221 ~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~-~ll~~~~-~~~gG 298 (770)
.+.+ + ..+..+...++.|+... ...+.+|.||..|. .++.... ....-
T Consensus 68 ---~l~~----------------~-----~~~~~~~~~i~~l~~~g------g~~T~~~~aL~~a~~~~~~~~~r~~~~~ 117 (202)
T 1ijb_A 68 ---GLKD----------------R-----KRPSELRRIASQVKYAG------SQVASTSEVLKYTLFQIFSKIDRPEASR 117 (202)
T ss_dssp ---CTTC----------------C-----CCHHHHHHHHHTCCCCC------BSCCCHHHHHHHHHHHTSSSCSCTTSEE
T ss_pred ---ecCC----------------C-----CCHHHHHHHHHhCcCCC------CCcCcHHHHHHHHHHHHhccCCCCCCCe
Confidence 0000 0 01234455555554321 12378999999997 4454211 12233
Q ss_pred EEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccc
Q 004188 299 RIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPV 378 (770)
Q Consensus 299 kI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~ 378 (770)
.|++++.|.++.|.. .-..+.+..+.+.||.|-.+.++. .++..+|..++
T Consensus 118 ~iillTDG~~~~~~~-----------------------------~~~~~~a~~l~~~gi~i~~igvG~-~~~~~~L~~iA 167 (202)
T 1ijb_A 118 IALLLMASQEPQRMS-----------------------------RNFVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIE 167 (202)
T ss_dssp EEEEEECCCCCGGGC-----------------------------TTHHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHH
T ss_pred EEEEEccCCCCccch-----------------------------HHHHHHHHHHHHCCCEEEEEecCC-cCCHHHHHHHh
Confidence 578888886643200 001244566677888666655543 46788899998
Q ss_pred cC-cceeEEEeCCCCh
Q 004188 379 EK-SGGFIMIGETFES 393 (770)
Q Consensus 379 ~~-TGG~v~~~~~f~~ 393 (770)
.. +||.+|..++|+.
T Consensus 168 ~~~~~~~~~~~~~~~~ 183 (202)
T 1ijb_A 168 KQAPENKAFVLSSVDE 183 (202)
T ss_dssp HHCTTCCCEEESSGGG
T ss_pred CCCCcccEEEeCCHHH
Confidence 74 6889998888764
No 17
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.19 E-value=0.00014 Score=70.22 Aligned_cols=159 Identities=11% Similarity=0.117 Sum_probs=101.7
Q ss_pred CCcEEEEEEecCcchhH-HHHHHHHHHHHhhc-CCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhhh
Q 004188 146 LGPAFVFVVDGCMEESE-IRAVKHELLRVMEQ-LPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLM 223 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~~-l~~~~~~i~~~l~~-lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~l 223 (770)
.|.-++||||.|.++.. ....++.++..+.. +.++.+||+|+|++..+..-
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~--------------------------- 57 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIIL--------------------------- 57 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEE---------------------------
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceEEE---------------------------
Confidence 45679999999998754 22233444444433 34689999999997664320
Q ss_pred cccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhccc-CCCCcEEEE
Q 004188 224 GIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCS-VNTGSRIMV 302 (770)
Q Consensus 224 ~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~~~gGkI~~ 302 (770)
|+...+..+...++.|.... ....+.++.||..|...+.... ......|++
T Consensus 58 -----------------------~~~~~~~~~~~~l~~l~~~~-----~~g~T~~~~al~~a~~~l~~~~~~~~~~~iil 109 (182)
T 1shu_X 58 -----------------------PLTGDRGKISKGLEDLKRVS-----PVGETYIHEGLKLANEQIQKAGGLKTSSIIIA 109 (182)
T ss_dssp -----------------------EEECCHHHHHHHHHHHHTCC-----CCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEE
T ss_pred -----------------------CCCCCHHHHHHHHHhcccCC-----CCCCchHHHHHHHHHHHHHhccCCCCCeEEEE
Confidence 00112344566777776432 1246789999999999986321 134567888
Q ss_pred EecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccccccCcc
Q 004188 303 FTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVEKSG 382 (770)
Q Consensus 303 F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~~TG 382 (770)
++.|.++.+ ......+.+..+.+.||.|..+.++ ..+-.+|..++..||
T Consensus 110 iTDG~~~~~-----------------------------~~~~~~~~~~~~~~~~i~i~~igvg--~~~~~~L~~ia~~~~ 158 (182)
T 1shu_X 110 LTDGKLDGL-----------------------------VPSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKE 158 (182)
T ss_dssp EECCCCCTT-----------------------------HHHHHHHHHHHHHHTTCEEEEEECS--SCCHHHHHHHSSSGG
T ss_pred ECCCCcCCC-----------------------------CchhHHHHHHHHHhCCCEEEEEeCC--cCCHHHHHHHhCCCC
Confidence 888865421 1123345677788889877777665 567788999999998
Q ss_pred eeEEEeC-CC
Q 004188 383 GFIMIGE-TF 391 (770)
Q Consensus 383 G~v~~~~-~f 391 (770)
|. |+.. +|
T Consensus 159 ~~-~~~~~~~ 167 (182)
T 1shu_X 159 QV-FPVKGGF 167 (182)
T ss_dssp GE-EESSSTT
T ss_pred ce-EEccCCH
Confidence 74 4443 44
No 18
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.18 E-value=2.3e-05 Score=78.25 Aligned_cols=164 Identities=15% Similarity=0.061 Sum_probs=106.2
Q ss_pred CCCcEEEEEEecCcchhHHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhh
Q 004188 145 VLGPAFVFVVDGCMEESEIRAVKHELLRVMEQLP---ENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQH 221 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~~l~~~~~~i~~~l~~lp---~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~ 221 (770)
+.+.-.+||||.|.++..++.+++.+...++.+. ++.+||+|+|++.++..-
T Consensus 5 ~~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~------------------------- 59 (213)
T 1pt6_A 5 STQLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEF------------------------- 59 (213)
T ss_dssp --CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEE-------------------------
T ss_pred CCCccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEE-------------------------
Confidence 3456799999999998888899999999888774 789999999998765320
Q ss_pred hhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh-hc---ccCCCC
Q 004188 222 LMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLL-EG---CSVNTG 297 (770)
Q Consensus 222 ~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll-~~---~~~~~g 297 (770)
.+.+. ..+..+...|+.+... ....+.+|.||..|...+ .. ......
T Consensus 60 --~l~~~---------------------~~~~~~~~~i~~l~~~------~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~ 110 (213)
T 1pt6_A 60 --NLNKY---------------------SSTEEVLVAAKKIVQR------GGRQTMTALGTDTARKEAFTEARGARRGVK 110 (213)
T ss_dssp --CTTTC---------------------SSHHHHHHHHHTCCCC------CCSSCCHHHHHHHHHHTTTSGGGTCCTTCE
T ss_pred --ecccc---------------------CCHHHHHHHHHhccCC------CCCcccHHHHHHHHHHHhcCcccCCCCCCC
Confidence 00000 0112233344433321 112468999999999863 31 111233
Q ss_pred cEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCc----cC---
Q 004188 298 SRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQ----VG--- 370 (770)
Q Consensus 298 GkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~----~~--- 370 (770)
..|++++.|.++.|. -+.+.+..+.+.||.|..+.++.+. .+
T Consensus 111 ~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~ 159 (213)
T 1pt6_A 111 KVMVIVTDGESHDNH-------------------------------RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEK 159 (213)
T ss_dssp EEEEEEESSCCSCSH-------------------------------HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHH
T ss_pred eEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEeccccccccccchh
Confidence 458888988665331 1245667777889877777665321 11
Q ss_pred -cccccccccC-cceeEEEeCCCCh
Q 004188 371 -VAELKVPVEK-SGGFIMIGETFES 393 (770)
Q Consensus 371 -l~~~~~l~~~-TGG~v~~~~~f~~ 393 (770)
..+|..+|.. |||.+|..+++..
T Consensus 160 ~~~~L~~iA~~~~~g~~~~~~~~~~ 184 (213)
T 1pt6_A 160 FVEEIKSIASEPTEKHFFNVSDELA 184 (213)
T ss_dssp HHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred hHHHHHHHhCCCchhcEEEeCCHHH
Confidence 3678899998 8899999887754
No 19
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.14 E-value=2.3e-05 Score=89.13 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=116.4
Q ss_pred CCCcEEEEEEecCcchhH--HHHHHHHHHHHhhcC---CCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhh
Q 004188 145 VLGPAFVFVVDGCMEESE--IRAVKHELLRVMEQL---PENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQI 219 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~~--l~~~~~~i~~~l~~l---p~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~ 219 (770)
..+.-++||||.|.++.. ++.+++++...++.| +++.+||||+|++..+..- .
T Consensus 7 ~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~-~--------------------- 64 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLM-S--------------------- 64 (509)
T ss_dssp SSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEE-C---------------------
T ss_pred CCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeE-e---------------------
Confidence 456679999999998754 888899999888877 7889999999998775431 0
Q ss_pred hhhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccC-----
Q 004188 220 QHLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSV----- 294 (770)
Q Consensus 220 ~~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~----- 294 (770)
+.+ +....++.+.+.|+.|+.... .....+.++.||..|..++.....
T Consensus 65 -----l~~-------------------~~~~~~~~~~~~l~~l~~~~~---~~~ggT~~~~aL~~a~~~l~~~~~~~~~~ 117 (509)
T 2odp_A 65 -----VLN-------------------DNSRDMTEVISSLENANYKDH---ENGTGTNTYAALNSVYLMMNNQMRLLGME 117 (509)
T ss_dssp -----TTS-------------------GGGGCHHHHHHHHHTCCGGGG---TTCCSCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred -----ccC-------------------CCCCCHHHHHHHHHhcccccC---CCCCCccHHHHHHHHHHHHhhcccccccc
Confidence 000 001123445666666654421 113568999999999998852110
Q ss_pred -----CCCcEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHH-----HHhCCcEEEEEee
Q 004188 295 -----NTGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDR-----LIKSSIVLDLFAC 364 (770)
Q Consensus 295 -----~~gGkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~-----~~~~~isvdlf~~ 364 (770)
.....|+++++|.++.|.. .. + .-+.+... +.+.||.|..+.+
T Consensus 118 ~~~~~~~~~~iillTDG~~~~~~~-~~--~------------------------~~~~~~~~~~~~~~~~~~i~i~~iGv 170 (509)
T 2odp_A 118 TMAWQEIRHAIILLTDGKSNMGGS-PK--T------------------------AVDHIREILNINQKRNDYLDIYAIGV 170 (509)
T ss_dssp SHHHHTEEEEEEEESCSCCCSSSC-TH--H------------------------HHHHHHHHTTCCSTTGGGEEEEEEEE
T ss_pred cccccccceEEEEECCCCccCCCC-hh--H------------------------HHHHHHHHhhccccccCceEEEEEEc
Confidence 1224589999998876521 00 0 00111110 1156676666666
Q ss_pred cCCccCcccccccccCccee--EEEeCCCChhHHHHHHHHHhc
Q 004188 365 SLDQVGVAELKVPVEKSGGF--IMIGETFESDQFRKCMRHIFG 405 (770)
Q Consensus 365 ~~~~~~l~~~~~l~~~TGG~--v~~~~~f~~~~~~~~l~~~l~ 405 (770)
+.+..+..+|..+|..+||. .++.+++ +.+.+.+.+++.
T Consensus 171 G~~~~~~~~L~~iA~~~~G~~~~~~~~~~--~~l~~~~~~i~~ 211 (509)
T 2odp_A 171 GKLDVDWRELNELGSKKDGERHAFILQDT--KALHQVFEHMLD 211 (509)
T ss_dssp SSSCCCHHHHHHHSCCCTTCCCEEEESSH--HHHHHHHHHHEE
T ss_pred CCCcccHHHHHhhccCCCCceeeEEecCH--HHHHHHHHhhhc
Confidence 55448899999999999998 6666654 445555555543
No 20
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.12 E-value=7.2e-05 Score=73.10 Aligned_cols=159 Identities=10% Similarity=0.106 Sum_probs=105.3
Q ss_pred CCcEEEEEEecCcchh--HHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhh
Q 004188 146 LGPAFVFVVDGCMEES--EIRAVKHELLRVMEQLP---ENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQ 220 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~--~l~~~~~~i~~~l~~lp---~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~ 220 (770)
.+.-.+||||.|.++. .++.+++.+...++.++ ++.+||+|+|++.++..- .
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~-~---------------------- 60 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDV-P---------------------- 60 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEE-C----------------------
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEE-e----------------------
Confidence 4567899999999875 48899999999988885 358999999998765420 0
Q ss_pred hhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhccc---CCCC
Q 004188 221 HLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCS---VNTG 297 (770)
Q Consensus 221 ~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~---~~~g 297 (770)
+. . ...+..+...++.++.. ...+.+|.||..|...+.... +...
T Consensus 61 --l~--~---------------------~~~~~~~~~~i~~l~~~-------~g~T~~~~aL~~a~~~l~~~~~g~r~~~ 108 (189)
T 1atz_A 61 --WN--V---------------------VPEKAHLLSLVDVMQRE-------GGPSQIGDALGFAVRYLTSEMHGARPGA 108 (189)
T ss_dssp --TT--C---------------------CCCHHHHHHHHHTCCCC-------CCCCCHHHHHHHHHHHHHSCCTTCCTTS
T ss_pred --cC--C---------------------CCCHHHHHHHHHhCcCC-------CCcchHHHHHHHHHHHHhccccCCCCCC
Confidence 00 0 01123455555555431 245799999999998875311 1112
Q ss_pred cE-EEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccc
Q 004188 298 SR-IMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKV 376 (770)
Q Consensus 298 Gk-I~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~ 376 (770)
.| ++++++|.++.. ..+.+..+.+.||.|..+.++. ..+..+|..
T Consensus 109 ~~~vivltdg~~~~~---------------------------------~~~~~~~~~~~gi~v~~igvG~-~~~~~~L~~ 154 (189)
T 1atz_A 109 SKAVVILVTDVSVDS---------------------------------VDAAADAARSNRVTVFPIGIGD-RYDAAQLRI 154 (189)
T ss_dssp EEEEEEEECSCCSSC---------------------------------CHHHHHHHHHTTEEEEEEEESS-SSCHHHHHH
T ss_pred CcEEEEEeCCCCCch---------------------------------HHHHHHHHHHCCCEEEEEEcCC-cCCHHHHHH
Confidence 35 677888743210 1345666778898777776654 367788999
Q ss_pred cccCcce-eEEEeCCCCh
Q 004188 377 PVEKSGG-FIMIGETFES 393 (770)
Q Consensus 377 l~~~TGG-~v~~~~~f~~ 393 (770)
++..++| .++...+|..
T Consensus 155 iA~~~~~~~~~~~~~~~~ 172 (189)
T 1atz_A 155 LAGPAGDSNVVKLQRIED 172 (189)
T ss_dssp HTGGGGGGGCEEESSTTH
T ss_pred HHCCCcccCEEEecChhh
Confidence 9998875 5777777653
No 21
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.07 E-value=9.8e-05 Score=71.60 Aligned_cols=159 Identities=10% Similarity=0.080 Sum_probs=102.4
Q ss_pred CCCcEEEEEEecCcchhH-HHHHHHHHHHHhhc-CCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhh
Q 004188 145 VLGPAFVFVVDGCMEESE-IRAVKHELLRVMEQ-LPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHL 222 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~~-l~~~~~~i~~~l~~-lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~ 222 (770)
..|.-++||||.|.++.. .+.+++.++..++. +.++.+||+|+|++..+..-
T Consensus 5 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~-------------------------- 58 (185)
T 3n2n_F 5 YGGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLM-------------------------- 58 (185)
T ss_dssp BSEEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEE--------------------------
T ss_pred CCCeeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEe--------------------------
Confidence 344568999999998753 55566666666554 35689999999997664420
Q ss_pred hcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcc---cCCCCcE
Q 004188 223 MGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGC---SVNTGSR 299 (770)
Q Consensus 223 l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~---~~~~gGk 299 (770)
|+...+..+...++.|+... ....+.+|.||..|...+... .......
T Consensus 59 ------------------------~l~~~~~~~~~~i~~l~~~~-----~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~ 109 (185)
T 3n2n_F 59 ------------------------KLTEDREQIRQGLEELQKVL-----PGGDTYMHEGFERASEQIYYENRQGYRTASV 109 (185)
T ss_dssp ------------------------EEECCHHHHHHHHHHHHTCC-----CCSCCCHHHHHHHHHHHHHHHHTTCBCEEEE
T ss_pred ------------------------ccCCCHHHHHHHHHHHhhhc-----CCCCccHHHHHHHHHHHHhhccccCCCCCcE
Confidence 11123455667777777542 124578999999999876310 0012246
Q ss_pred EEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCccccccccc
Q 004188 300 IMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKVPVE 379 (770)
Q Consensus 300 I~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~l~~ 379 (770)
|++++.|.++.++ ..-..+.+..+.+.||.|..+.++ ..+-.+|..++.
T Consensus 110 iillTDG~~~~~~-----------------------------~~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA~ 158 (185)
T 3n2n_F 110 IIALTDGELHEDL-----------------------------FFYSEREANRSRDLGAIVYAVGVK--DFNETQLARIAD 158 (185)
T ss_dssp EEEEECCCCCHHH-----------------------------HHHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTSS
T ss_pred EEEEcCCCCCCCc-----------------------------ccchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHhC
Confidence 7888887553211 001145677788888876666655 678888999996
Q ss_pred CcceeEEEeCC
Q 004188 380 KSGGFIMIGET 390 (770)
Q Consensus 380 ~TGG~v~~~~~ 390 (770)
. +|.+|+..+
T Consensus 159 ~-~~~~~~~~~ 168 (185)
T 3n2n_F 159 S-KDHVFPVND 168 (185)
T ss_dssp S-GGGEEEHHH
T ss_pred C-CCCeEEecc
Confidence 5 577777664
No 22
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.07 E-value=3.4e-05 Score=75.88 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=106.0
Q ss_pred CCcEEEEEEecCcchhH--HHHHHHHHHHHhhcC-CCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhh
Q 004188 146 LGPAFVFVVDGCMEESE--IRAVKHELLRVMEQL-PENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHL 222 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~~--l~~~~~~i~~~l~~l-p~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~ 222 (770)
.+.-++||||.|.++.. ++..++.++..++.+ +++.+||+|+|++.++..- . .....
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~-~-----------------~~~~~-- 67 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHF-T-----------------FEEFR-- 67 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEE-C-----------------HHHHH--
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEE-e-----------------cCccC--
Confidence 45679999999998753 678889999999988 7899999999998865431 0 00000
Q ss_pred hcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHH-HHhhcc---cCCCCc
Q 004188 223 MGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAV-GLLEGC---SVNTGS 298 (770)
Q Consensus 223 l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~-~ll~~~---~~~~gG 298 (770)
+.. . +...|+.+.. ....+.+|.||..|. .++... ......
T Consensus 68 ----~~~-------------~-----------~~~~i~~l~~-------~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~ 112 (198)
T 1n3y_A 68 ----RSS-------------N-----------PLSLLASVHQ-------LQGFTYTATAIQNVVHRLFHASYGARRDAAK 112 (198)
T ss_dssp ----HCS-------------S-----------GGGGGTTCCC-------CCSCBCHHHHHHHHHTTTTSGGGTCCTTSEE
T ss_pred ----CHH-------------H-----------HHHHHhcCcC-------CCCCchHHHHHHHHHHHHhCcccCCCCCCce
Confidence 000 0 0111112211 124678999999999 554421 112345
Q ss_pred EEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCc---cCccccc
Q 004188 299 RIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQ---VGVAELK 375 (770)
Q Consensus 299 kI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~---~~l~~~~ 375 (770)
.|++++.|.++.++- -+.+.+..+.+.||.|..+.++.+. .+..+|.
T Consensus 113 ~iillTDG~~~~~~~------------------------------~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~ 162 (198)
T 1n3y_A 113 ILIVITDGKKEGDSL------------------------------DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELN 162 (198)
T ss_dssp EEEEEESSCCBSCSS------------------------------CHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHH
T ss_pred EEEEECCCCCCCCcc------------------------------cHHHHHHHHHHCCCEEEEEEccccccccccHHHHH
Confidence 688999997763220 0234566778899988888776543 3678899
Q ss_pred ccccCccee-EEEeCCCCh
Q 004188 376 VPVEKSGGF-IMIGETFES 393 (770)
Q Consensus 376 ~l~~~TGG~-v~~~~~f~~ 393 (770)
.++..|||. ++..+++..
T Consensus 163 ~iA~~~~g~~~~~~~~~~~ 181 (198)
T 1n3y_A 163 DIASKPSQEHIFKVEDFDA 181 (198)
T ss_dssp HHSCSSSGGGEEEESSGGG
T ss_pred HHHcCCCcccEEEeCCHHH
Confidence 999999997 466676643
No 23
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.04 E-value=6.2e-05 Score=85.27 Aligned_cols=188 Identities=16% Similarity=0.164 Sum_probs=112.9
Q ss_pred cEEEEEEecCcchh--HHHHHHHHHHHHhhcC---CCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhh
Q 004188 148 PAFVFVVDGCMEES--EIRAVKHELLRVMEQL---PENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHL 222 (770)
Q Consensus 148 p~~vFvID~s~~~~--~l~~~~~~i~~~l~~l---p~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~ 222 (770)
.-++||||.|.++. .++.+++.+...++.+ +++.+||+|+|++..+..-
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~-------------------------- 55 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV-------------------------- 55 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE--------------------------
T ss_pred eeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee--------------------------
Confidence 45799999999874 4788888888777754 5679999999998765431
Q ss_pred hcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhccc-------CC
Q 004188 223 MGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCS-------VN 295 (770)
Q Consensus 223 l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-------~~ 295 (770)
.+.+ +....+..+.+.|+.|..... .....+.+|.||..|..++.... ..
T Consensus 56 -~~~~-------------------~~~~~~~~~~~~l~~l~~~~~---~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~ 112 (497)
T 1rrk_A 56 -KVSE-------------------ADSSNADWVTKQLNEINYEDH---KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNR 112 (497)
T ss_dssp -CTTS-------------------GGGGCHHHHHHHHHHCCGGGS---CCTTCCCHHHHHHHHHHHHCCC------CGGG
T ss_pred -cccc-------------------ccccCHHHHHHHHHhCcCccc---cccCccCHHHHHHHHHHHhhhhhccccccccc
Confidence 0000 111224556677777765321 12356899999999999984211 12
Q ss_pred CCcEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCccccc
Q 004188 296 TGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELK 375 (770)
Q Consensus 296 ~gGkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~ 375 (770)
....|+++++|.++.|....... +.++...++.. .+..+.+.||.|..+.++ +.++..+|.
T Consensus 113 ~~~~iillTDG~~~~g~~~~~~~---~~~~~~~~~~~---------------~~~~~~~~~i~v~~igvG-~~~~~~~L~ 173 (497)
T 1rrk_A 113 TRHVIILMTDGLHNMGGDPITVI---DEIRDLLYIGK---------------DRKNPREDYLDVYVFGVG-PLVNQVNIN 173 (497)
T ss_dssp CEEEEEEEECSCCCSSSCTHHHH---HHHHHHTTCSS---------------CC-CCCGGGEEEEEEECS-SSCCHHHHH
T ss_pred cceEEEEEeCCCcccCCChhHHH---HHHHHHhhhhc---------------ccccchhcCeeEEEecCC-CccCHHHHH
Confidence 34578899999988765211100 00000000000 011122346666555443 347888899
Q ss_pred ccccCcce--eEEEeCCCChhHHHHHHHHHhc
Q 004188 376 VPVEKSGG--FIMIGETFESDQFRKCMRHIFG 405 (770)
Q Consensus 376 ~l~~~TGG--~v~~~~~f~~~~~~~~l~~~l~ 405 (770)
.+|..+|| .++..+++ +.+.+.+.+.+.
T Consensus 174 ~iA~~~~g~~~~~~~~~~--~~l~~~~~~~i~ 203 (497)
T 1rrk_A 174 ALASKKDNEQHVCKVKDM--ECLEDVFYQMID 203 (497)
T ss_dssp HHSCCCTTCCCEEETTCH--HHHHHHHHHHSC
T ss_pred HHhcCCCCcceEEEeCCH--HHHhhhhhhccc
Confidence 99999999 77777754 345555554443
No 24
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=97.98 E-value=7.7e-05 Score=77.97 Aligned_cols=165 Identities=15% Similarity=0.089 Sum_probs=108.6
Q ss_pred CCcEEEEEEecCcchh--HH-HHHHHHHHHHhhcCCC---CcEEEEEEECCEEEEE-EcCCCCceeeeeecCCccCChHh
Q 004188 146 LGPAFVFVVDGCMEES--EI-RAVKHELLRVMEQLPE---NALVGLVVFDSMVYVH-DLGFSECCRVLVFHGGRELSSEQ 218 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~--~l-~~~~~~i~~~l~~lp~---~~~VglITf~~~V~~y-~l~~~~~~~~~v~~g~~~~~~~~ 218 (770)
.+.-++||||.|.++. .+ +.++++++..++.++. +.+||||+|++.++.. .+...
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~------------------ 81 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSD------------------ 81 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSS------------------
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEcccc------------------
Confidence 4567999999999875 35 7899999999998875 7899999999877432 22110
Q ss_pred hhhhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhccc--CCC
Q 004188 219 IQHLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCS--VNT 296 (770)
Q Consensus 219 ~~~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~--~~~ 296 (770)
....+..+...|+.|..... ....+.+|.||..|...+.... .+.
T Consensus 82 -----------------------------~~~~~~~l~~~i~~l~~~~~----~~G~T~~~~aL~~a~~~l~~~~~r~~~ 128 (281)
T 4hqf_A 82 -----------------------------ASKNKEKALIIIKSLLSTNL----PYGKTSLTDALLQVRKHLNDRINRENA 128 (281)
T ss_dssp -----------------------------CSSCHHHHHHHHHHHHHTTG----GGCSCCHHHHHHHHHHHHHTSCCCTTC
T ss_pred -----------------------------CccCHHHHHHHHHHHhhccC----CCCCccHHHHHHHHHHHHHhccCCCCC
Confidence 00012345566666764211 1235789999999988776211 012
Q ss_pred CcEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccc
Q 004188 297 GSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKV 376 (770)
Q Consensus 297 gGkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~ 376 (770)
...|+++++|.++.+ .-..+.+..+.+.||.|-.+.++.+ ++-..|..
T Consensus 129 ~~~iillTDG~~~d~-------------------------------~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~ 176 (281)
T 4hqf_A 129 NQLVVILTDGIPDSI-------------------------------QDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRF 176 (281)
T ss_dssp EEEEEEEESSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHH
T ss_pred CEEEEEEecCCCCCc-------------------------------HHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHh
Confidence 235888888865410 1123456677788887766665543 67777888
Q ss_pred cccC--cce--eEEEeCCCCh
Q 004188 377 PVEK--SGG--FIMIGETFES 393 (770)
Q Consensus 377 l~~~--TGG--~v~~~~~f~~ 393 (770)
++.. +|| .++...+|+.
T Consensus 177 iA~~~~~~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 177 LVGCHPSDGKCNLYADSAWEN 197 (281)
T ss_dssp HTTSCSSSSCCTTEEEECGGG
T ss_pred hhCCCCCCCCCceEEecchhh
Confidence 8876 676 7888888865
No 25
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=97.95 E-value=0.00026 Score=73.32 Aligned_cols=175 Identities=11% Similarity=0.033 Sum_probs=111.4
Q ss_pred CCcEEEEEEecCcchhH--H-HHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEE-cCCCCceeeeeecCCccCChHh
Q 004188 146 LGPAFVFVVDGCMEESE--I-RAVKHELLRVMEQLP---ENALVGLVVFDSMVYVHD-LGFSECCRVLVFHGGRELSSEQ 218 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~~--l-~~~~~~i~~~l~~lp---~~~~VglITf~~~V~~y~-l~~~~~~~~~v~~g~~~~~~~~ 218 (770)
.+.-++||||.|.++.. + +.+++.++..++.+. ++.+||+|+|++.+...- +..
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~------------------- 77 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGS------------------- 77 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTS-------------------
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCC-------------------
Confidence 34568999999998753 6 578899999999886 689999999998765421 100
Q ss_pred hhhhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcc--cCCC
Q 004188 219 IQHLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGC--SVNT 296 (770)
Q Consensus 219 ~~~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~--~~~~ 296 (770)
. ....+..+...|+.|+.... ....+.+|.||..|..++... ....
T Consensus 78 -------------------------~---~~~~~~~~~~~i~~l~~~~~----~~G~T~~~~AL~~a~~~l~~~~~r~~~ 125 (266)
T 4hqo_A 78 -------------------------G---QSIDKRQALSKVTELRKTYT----PYGTTSMTAALDEVQKHLNDRVNREKA 125 (266)
T ss_dssp -------------------------H---HHHCHHHHHHHHHHHHHHCC----CCSCCCHHHHHHHHHHHHHTTCSCTTS
T ss_pred -------------------------C---CccCHHHHHHHHHHhhhccC----CCCCCCHHHHHHHHHHHHhhccccCCC
Confidence 0 00113445566676653211 124578999999999988731 0112
Q ss_pred CcEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccc
Q 004188 297 GSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKV 376 (770)
Q Consensus 297 gGkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~ 376 (770)
...|+++++|.++. ..-..+.+..+.+.||.|-.+.++. ..+-..|..
T Consensus 126 ~~~iIllTDG~~~d-------------------------------~~~~~~~a~~l~~~gi~i~~iGiG~-~~~~~~L~~ 173 (266)
T 4hqo_A 126 IQLVILMTDGVPNS-------------------------------KYRALEVANKLKQRNVRLAVIGIGQ-GINHQFNRL 173 (266)
T ss_dssp EEEEEEEECSCCSC-------------------------------HHHHHHHHHHHHHTTCEEEEEECSS-SCCHHHHHH
T ss_pred CeEEEEEccCCCCC-------------------------------chHHHHHHHHHHHCCCEEEEEecCc-ccCHHHHHH
Confidence 24578888886541 0122456777788898776665554 456666788
Q ss_pred cccCc--ce--eEEEeCCCChhHHHHHHHHHhc
Q 004188 377 PVEKS--GG--FIMIGETFESDQFRKCMRHIFG 405 (770)
Q Consensus 377 l~~~T--GG--~v~~~~~f~~~~~~~~l~~~l~ 405 (770)
++... || .+|++.+|+ .+.+-+.+++.
T Consensus 174 iA~~~~~~g~~~~~~~~d~~--~L~~i~~~l~~ 204 (266)
T 4hqo_A 174 IAGCRPREPNCKFYSYADWN--EAVALIKPFIA 204 (266)
T ss_dssp HHTCCTTCSSCTTEECSCHH--HHHHHHHHHHC
T ss_pred hhCCCCCCCCCCeEEecCHH--HHHHHHHHHHh
Confidence 88764 43 777777764 35544444443
No 26
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.92 E-value=3.8e-05 Score=75.42 Aligned_cols=163 Identities=18% Similarity=0.215 Sum_probs=102.5
Q ss_pred CCcEEEEEEecCcchh--HHHHHHHHHHHHhhcC-CCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhh
Q 004188 146 LGPAFVFVVDGCMEES--EIRAVKHELLRVMEQL-PENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHL 222 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~--~l~~~~~~i~~~l~~l-p~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~ 222 (770)
.+.-.+||||.|.++. .++.+++.++..++.+ +++.+||+|+|++.++..- . ....
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~-~-----------------l~~~--- 62 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHF-T-----------------FKEF--- 62 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEE-C-----------------HHHH---
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEE-e-----------------cCCc---
Confidence 4567899999999875 3788888888888877 4679999999998775420 0 0000
Q ss_pred hcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHH-Hhhcc---cCCCCc
Q 004188 223 MGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVG-LLEGC---SVNTGS 298 (770)
Q Consensus 223 l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~-ll~~~---~~~~gG 298 (770)
.+ +..+...++.|+. ....+.+|.||..|.. ++... .++...
T Consensus 63 ---~~------------------------~~~~~~~i~~l~~-------~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~ 108 (194)
T 1mf7_A 63 ---QN------------------------NPNPRSLVKPITQ-------LLGRTHTATGIRKVVRELFNITNGARKNAFK 108 (194)
T ss_dssp ---HH------------------------SCCHHHHHTTCCC-------CCSCBCHHHHHHHHHHTTTSGGGTCCTTSEE
T ss_pred ---CC------------------------HHHHHHHHHhCcC-------CCCCchHHHHHHHHHHHhcCcccCCCCCCCe
Confidence 00 0112233444432 1245789999999996 44310 011224
Q ss_pred EEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCc---cCccccc
Q 004188 299 RIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQ---VGVAELK 375 (770)
Q Consensus 299 kI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~---~~l~~~~ 375 (770)
.|++++.|.++..+- + +.+.+..+.+.||.|..+.++.+. .+..+|.
T Consensus 109 ~iillTDG~~~~d~~---------------~---------------~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~ 158 (194)
T 1mf7_A 109 ILVVITDGEKFGDPL---------------G---------------YEDVIPEADREGVIRYVIGVGDAFRSEKSRQELN 158 (194)
T ss_dssp EEEEEESSCCBSCSS---------------C---------------GGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHH
T ss_pred EEEEEcCCCCCCCch---------------h---------------hHHHHHHHHHCCCEEEEEEecccccccccHHHHH
Confidence 588899998761110 0 012345567788887777665432 1367899
Q ss_pred ccccCc-ceeEEEeCCCCh
Q 004188 376 VPVEKS-GGFIMIGETFES 393 (770)
Q Consensus 376 ~l~~~T-GG~v~~~~~f~~ 393 (770)
.++..+ ||.+|..++++.
T Consensus 159 ~iA~~~~~~~~~~~~~~~~ 177 (194)
T 1mf7_A 159 TIASKPPRDHVFQVNNFEA 177 (194)
T ss_dssp HHSCSSHHHHEEEESSGGG
T ss_pred HHhCCCCcccEEEeCCHHH
Confidence 999986 588888887754
No 27
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.84 E-value=0.0002 Score=69.35 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=97.1
Q ss_pred CcEEEEEEecCcchh--HHHHHHHHHHHHhhcC-CCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhhh
Q 004188 147 GPAFVFVVDGCMEES--EIRAVKHELLRVMEQL-PENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLM 223 (770)
Q Consensus 147 ~p~~vFvID~s~~~~--~l~~~~~~i~~~l~~l-p~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~l 223 (770)
|.-.+||||.|.+.. .++.+++.++..++.+ |++.+||+|+|++.++.. +. +....
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~-~~-----------------l~~~~--- 60 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTE-FD-----------------FSDYV--- 60 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEE-EC-----------------HHHHH---
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEE-Ec-----------------CcccC---
Confidence 346899999999864 3788899999988888 456899999999877542 00 00000
Q ss_pred cccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHH-Hhhccc---CCCCcE
Q 004188 224 GIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVG-LLEGCS---VNTGSR 299 (770)
Q Consensus 224 ~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~-ll~~~~---~~~gGk 299 (770)
.+..+..+++.|+.+ ...+.+|.||..|.. ++.... +...-.
T Consensus 61 ---------------------------~~~~~~~~~~~i~~~-------~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~ 106 (179)
T 1mjn_A 61 ---------------------------KRKDPDALLKHVKHM-------LLLTNTFGAINYVATEVFREELGARPDATKV 106 (179)
T ss_dssp ---------------------------HHCCHHHHHTTCCCC-------CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEE
T ss_pred ---------------------------CHHHHHHHHHhcccC-------CCCChHHHHHHHHHHHhcccccCCCCCCCeE
Confidence 001133455555432 135789999999985 554210 111235
Q ss_pred EEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccC----ccccc
Q 004188 300 IMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVG----VAELK 375 (770)
Q Consensus 300 I~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~----l~~~~ 375 (770)
|++++.|.++.|.- . + ...||.|-.+..+.+ .+ ..+|.
T Consensus 107 iillTDG~~~~~~~---------------------~----~------------~~~~i~i~~igvG~~-~~~~~~~~~L~ 148 (179)
T 1mjn_A 107 LIIITDGEATDSGN---------------------I----D------------AAKDIIRYIIGIGKH-FQTKESQETLH 148 (179)
T ss_dssp EEEEESSCCSSCSC---------------------C----G------------GGTTSEEEEEEESGG-GCSHHHHHTTG
T ss_pred EEEEcCCCCCCCcc---------------------h----H------------HHCCCEEEEEEcccc-ccccccHHHHH
Confidence 88899998765420 0 0 134666555554432 23 37899
Q ss_pred ccccCcce-eEEEeCCCCh
Q 004188 376 VPVEKSGG-FIMIGETFES 393 (770)
Q Consensus 376 ~l~~~TGG-~v~~~~~f~~ 393 (770)
.++..+|| .+|+.++|+.
T Consensus 149 ~iA~~~~~~~~~~~~~~~~ 167 (179)
T 1mjn_A 149 KFASKPASEFVKILDTFEK 167 (179)
T ss_dssp GGSCSCHHHHEEEESSGGG
T ss_pred HHhCCccHhcEEEeCCHHH
Confidence 99999987 5777787753
No 28
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.84 E-value=0.00015 Score=71.22 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=92.5
Q ss_pred EEEEEEecCcchh-------HHHHHHHHHHHHhhc---CCCCcEEEEEEECCE-EEEEEcCCCCceeeeeecCCccCChH
Q 004188 149 AFVFVVDGCMEES-------EIRAVKHELLRVMEQ---LPENALVGLVVFDSM-VYVHDLGFSECCRVLVFHGGRELSSE 217 (770)
Q Consensus 149 ~~vFvID~s~~~~-------~l~~~~~~i~~~l~~---lp~~~~VglITf~~~-V~~y~l~~~~~~~~~v~~g~~~~~~~ 217 (770)
..+|+||+|.++. +++..++++...+.. ..++.+||||+|.+. -++
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~----------------------- 60 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV----------------------- 60 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE-----------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE-----------------------
Confidence 5789999999875 367777766554332 234579999999752 211
Q ss_pred hhhhhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhccc-CCC
Q 004188 218 QIQHLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCS-VNT 296 (770)
Q Consensus 218 ~~~~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~~~ 296 (770)
++|+......+...|+.+.. . ..+.+|.||..|..+++... +..
T Consensus 61 ---------------------------~~plT~d~~~i~~~L~~l~~-----~---g~t~l~~aL~~A~~~l~~~~~~~~ 105 (192)
T 2x5n_A 61 ---------------------------LSTLTRDYGKFLSAMHDLPV-----R---GNAKFGDGIQIAQLALKHRENKIQ 105 (192)
T ss_dssp ---------------------------EEEEESCHHHHHHHHTTCCC-----C---SCCCHHHHHHHHHHHHHTCSCTTS
T ss_pred ---------------------------ecCCCCCHHHHHHHHHcCCC-----C---CCchHHHHHHHHHHHHHhccccCC
Confidence 11223334555666665432 1 35799999999999998321 123
Q ss_pred CcEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccccc
Q 004188 297 GSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAELKV 376 (770)
Q Consensus 297 gGkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~~~ 376 (770)
..||++|+++.-+. ...-..++++.+.+.||.|+++.++.+.-+-. |..
T Consensus 106 ~~riiil~~~~~~~------------------------------~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~ 154 (192)
T 2x5n_A 106 RQRIVAFVGSPIVE------------------------------DEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQH 154 (192)
T ss_dssp EEEEEEEECSCCSS------------------------------CHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHH
T ss_pred CceEEEEEECCCCC------------------------------CchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHH
Confidence 56788888652110 01224678999999999999999987765556 888
Q ss_pred cccCc
Q 004188 377 PVEKS 381 (770)
Q Consensus 377 l~~~T 381 (770)
+++.+
T Consensus 155 la~~~ 159 (192)
T 2x5n_A 155 FIDAA 159 (192)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88773
No 29
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.78 E-value=6.3e-05 Score=89.65 Aligned_cols=178 Identities=18% Similarity=0.166 Sum_probs=106.2
Q ss_pred CcEEEEEEecCcchhH--HHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhh
Q 004188 147 GPAFVFVVDGCMEESE--IRAVKHELLRVMEQLP---ENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQH 221 (770)
Q Consensus 147 ~p~~vFvID~s~~~~~--l~~~~~~i~~~l~~lp---~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~ 221 (770)
+.-++||||.|.++.. ++.++++++..++.++ .+.|||||+|++.....-
T Consensus 243 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~------------------------- 297 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWV------------------------- 297 (741)
T ss_dssp EEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE-------------------------
T ss_pred ceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeE-------------------------
Confidence 4469999999998743 7888888888887764 468999999998664321
Q ss_pred hhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhccc-CCCC---
Q 004188 222 LMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCS-VNTG--- 297 (770)
Q Consensus 222 ~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~~~g--- 297 (770)
.+.+. . ...++.+.+.|+.|+... ......+.+|.||..|..++.... ...+
T Consensus 298 --~l~~~------------------~-~~~~~~~~~~i~~l~~~~---~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~ 353 (741)
T 3hrz_D 298 --KVSEA------------------D-SSNADWVTKQLNEINYED---HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWN 353 (741)
T ss_dssp --CTTSG------------------G-GGCHHHHHHHHTTCCGGG---GSSSCCCCHHHHHHHHHHHHCCC--CCCTTGG
T ss_pred --eeccc------------------C-CcCHHHHHHHHHhccccc---ccCCCChHHHHHHHHHHHHHhhhhhccccchh
Confidence 00000 0 012334555666655321 112356789999999999883110 0111
Q ss_pred ---cEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccc
Q 004188 298 ---SRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAEL 374 (770)
Q Consensus 298 ---GkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~ 374 (770)
-.|+++++|.++.|..-... .+.++...++. +.++.+.+.||.|..+.++. .++-.+|
T Consensus 354 ~~~~~iillTDG~~n~g~~p~~~---~~~i~~~~~~~---------------~~a~~~~~~gi~i~~igvG~-~~~~~~L 414 (741)
T 3hrz_D 354 RTRHVIILMTDGLHNMGGDPITV---IDEIRDLLYIG---------------KDRKNPREDYLDVYVFGVGP-LVNQVNI 414 (741)
T ss_dssp GEEEEEEEEECSCCCSSSCTHHH---HHHHHHHTTCS---------------SCTTCCCGGGEEEEEEECSS-SCCHHHH
T ss_pred ccCeEEEEECCCccccCCCchHH---HHHHHHHhhcc---------------cccccccccCeeEEEEeCCC-cCCHHHH
Confidence 25889999999987521111 11111100110 11223344566555554432 4788889
Q ss_pred cccccCccee--EEEeCCCC
Q 004188 375 KVPVEKSGGF--IMIGETFE 392 (770)
Q Consensus 375 ~~l~~~TGG~--v~~~~~f~ 392 (770)
..|+..+||. +|..++++
T Consensus 415 ~~ia~~~~g~~~~~~~~~~~ 434 (741)
T 3hrz_D 415 NALASKKDNEQHVFKVKDME 434 (741)
T ss_dssp HHHSCCCTTCCCEECBSSHH
T ss_pred HHHhcCCCCcceEEEeCCHH
Confidence 9999999995 77777654
No 30
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.65 E-value=0.00061 Score=67.11 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=41.8
Q ss_pred CCCcEEEEEEecCcchh--HHHHHHHHHHHHhhcC---CCCcEEEEEEECCEEEE
Q 004188 145 VLGPAFVFVVDGCMEES--EIRAVKHELLRVMEQL---PENALVGLVVFDSMVYV 194 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~--~l~~~~~~i~~~l~~l---p~~~~VglITf~~~V~~ 194 (770)
..+--.+|+||.|.+.. .++.+++.++..++.+ +++.|||+|+|++.++.
T Consensus 19 ~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~ 73 (199)
T 3zqk_A 19 SMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTV 73 (199)
T ss_dssp CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEE
T ss_pred CCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccE
Confidence 34556899999999875 4888999999999988 57899999999987754
No 31
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=97.65 E-value=0.00012 Score=64.31 Aligned_cols=84 Identities=14% Similarity=0.096 Sum_probs=60.6
Q ss_pred cccccccccCC--CCcccccccccccCCeeEEEeCCcEEEEEEcCchhhHhhCCCCCCCcchhHHHHHhccHHHHHHHH-
Q 004188 630 QPTLFQYSFDG--PPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPETDAEQLV- 706 (770)
Q Consensus 630 yP~L~~~~~~~--~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~- 706 (770)
.|+||.+.-.. ....|+++.++|.++.+||||+|..||+|+|+.+.. .++ ..+...|+.|.
T Consensus 2 ~~rL~~v~g~~~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~-----------~Ek-----~~A~~~a~~i~~ 65 (104)
T 1kcq_A 2 VQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNR-----------YER-----LKATQVSKGIRD 65 (104)
T ss_dssp CCEEEEEEESSSEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCH-----------HHH-----HHHHHHHHHHHH
T ss_pred CcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCH-----------HHH-----HHHHHHHHHHHh
Confidence 37788775322 234678999999999999999999999999986442 111 12344556665
Q ss_pred HcCCCCcEEEEEccCCChHHHHH
Q 004188 707 AERIPAPKIIKCDQHGSQARFLL 729 (770)
Q Consensus 707 ~~R~~~p~~~~~~~g~~~~r~l~ 729 (770)
.+|.....+.+++||...+.|+.
T Consensus 66 ~er~~~~~i~~v~eG~E~~~Fw~ 88 (104)
T 1kcq_A 66 NERSGRARVHVSEEGTEPEAMLQ 88 (104)
T ss_dssp HTSTTCSEEEEEETTCCCHHHHH
T ss_pred hccCCCCcEEEEeCCCCCHHHHH
Confidence 36777778999999987777744
No 32
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.54 E-value=0.0014 Score=63.28 Aligned_cols=144 Identities=14% Similarity=0.120 Sum_probs=88.0
Q ss_pred CCcEEEEEEecCcchh--HHHHHHHHHHHHhhcCC---CCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhh
Q 004188 146 LGPAFVFVVDGCMEES--EIRAVKHELLRVMEQLP---ENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQ 220 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~--~l~~~~~~i~~~l~~lp---~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~ 220 (770)
.+.-++||||.|.++. .++.+++.+...++.++ ++.+||+|+|++.++..-
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~------------------------ 71 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQW------------------------ 71 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEE------------------------
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEE------------------------
Confidence 3567999999999874 48889999999988885 458999999998775320
Q ss_pred hhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcc----cCCC
Q 004188 221 HLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGC----SVNT 296 (770)
Q Consensus 221 ~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~----~~~~ 296 (770)
.+.+.. ...+..+.+.|+.++.. ...+.+|.||..|...+... ....
T Consensus 72 ---~l~~~~-------------------~~~~~~~~~~i~~l~~~-------~g~T~~~~aL~~a~~~l~~~~~g~r~~~ 122 (178)
T 2xgg_A 72 ---DLQSPN-------------------AVDKQLAAHAVLDMPYK-------KGSTNTSDGLKACKQILFTGSRPGREHV 122 (178)
T ss_dssp ---CTTSGG-------------------GSCHHHHHHHHHHCCCC-------CCCCCHHHHHHHHHHHHHHCCCTTCTTS
T ss_pred ---eCCCCC-------------------ccCHHHHHHHHHhCCCC-------CCCccHHHHHHHHHHHhcCcccCCCCCC
Confidence 000000 01234455566665421 13578999999999876311 1123
Q ss_pred CcEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCCccCcccc
Q 004188 297 GSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLDQVGVAEL 374 (770)
Q Consensus 297 gGkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~~ 374 (770)
...|++++.|.++.|. -..+.+..+.+.||.|-.+.++. .++-..|
T Consensus 123 ~~~iillTDG~~~~~~-------------------------------~~~~~~~~l~~~gi~v~~igvG~-~~~~~~l 168 (178)
T 2xgg_A 123 PKLVIGMTDGESDSDF-------------------------------RTVRAAKEIRELGGIVTVLAVGH-YVAAALV 168 (178)
T ss_dssp CEEEEEEESSCCCHHH-------------------------------HHSHHHHHHHHTTCEEEEEECC---------
T ss_pred CEEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEcCC-cCCHHHH
Confidence 4578888888665320 12345667778888776665543 3444433
No 33
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.14 E-value=0.00098 Score=76.61 Aligned_cols=146 Identities=21% Similarity=0.238 Sum_probs=86.7
Q ss_pred cEEEEEEecCcchh--------HHHHHHHHHHHHhhc---CCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCCh
Q 004188 148 PAFVFVVDGCMEES--------EIRAVKHELLRVMEQ---LPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSS 216 (770)
Q Consensus 148 p~~vFvID~s~~~~--------~l~~~~~~i~~~l~~---lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~ 216 (770)
-..||+||+|.++. .++.+++++...++. ..++.+||||+|++.-.- . .++.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~----~-------------plt~ 70 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTD----N-------------PLSG 70 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCB----S-------------TTCT
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCC----C-------------cccc
Confidence 56899999999863 478888888888874 466789999999864310 0 0110
Q ss_pred H-hhhhhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccC-
Q 004188 217 E-QIQHLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSV- 294 (770)
Q Consensus 217 ~-~~~~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~- 294 (770)
+ ..+.. ..+.++...... +++.|..... .+ ....++|.||.+|..++.....
T Consensus 71 d~~y~~i--------------------~vl~~l~~~~~~---~l~~l~~~l~--~~-~~~t~i~~al~~A~~~l~~~~~~ 124 (565)
T 1jey_B 71 GDQYQNI--------------------TVHRHLMLPDFD---LLEDIESKIQ--PG-SQQADFLDALIVSMDVIQHETIG 124 (565)
T ss_dssp TTCSTTE--------------------EEEEEEECCCHH---HHHHHHTTCC--CC-SSCCCHHHHHHHHHHHHHHHSSS
T ss_pred ccCCCce--------------------EEeecCCCCCHH---HHHHHHhhcc--CC-CccccHHHHHHHHHHHHHHHhhc
Confidence 0 00000 022233221111 2222332111 11 2357899999999999984311
Q ss_pred -CCC-cEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEE-EEeecC
Q 004188 295 -NTG-SRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLD-LFACSL 366 (770)
Q Consensus 295 -~~g-GkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvd-lf~~~~ 366 (770)
..+ -||++||+|--+.|. .-..+++..+.+.||.|+ ++.++.
T Consensus 125 ~k~~~krIiLlTDg~~~~~~------------------------------~~~~~~a~~l~~~gI~i~~vig~g~ 169 (565)
T 1jey_B 125 KKFEKRHIEIFTDLSSRFSK------------------------------SQLDIIIHSLKKCDISLQFFLPFSL 169 (565)
T ss_dssp SCCSEEEEEEECCCCSCCCC------------------------------TTHHHHHHHHHHTTEEEEEEESSCC
T ss_pred ccccccEEEEEeCCCCCCCH------------------------------HHHHHHHHHHHhcCcEEEEEeccCC
Confidence 123 479999988433321 013567999999999999 665544
No 34
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=97.00 E-value=0.00082 Score=60.02 Aligned_cols=84 Identities=25% Similarity=0.260 Sum_probs=59.4
Q ss_pred cccccccccCC--CCcccccccccccCCeeEEEeCCcEEEEEEcCchhhHhhCCCCCCCcchhHHHHHhccHHHHHHHHH
Q 004188 630 QPTLFQYSFDG--PPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPETDAEQLVA 707 (770)
Q Consensus 630 yP~L~~~~~~~--~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 707 (770)
.|+||.+.-.. ....|+++.++|.++.+||||+|..||+|+|+.... .++ ..+...|+.|..
T Consensus 12 ~~rL~~v~G~~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~-----------~Ek-----~~A~~~a~~i~~ 75 (114)
T 1svq_A 12 KPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSP-----------QEK-----NKAAEVARAIDA 75 (114)
T ss_dssp CEEEEEEECTTSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCH-----------HHH-----HHHHHHHHHHHH
T ss_pred CcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCH-----------HHH-----HHHHHHHHHhhh
Confidence 57888876221 235678999999999999999999999999986442 111 123445556655
Q ss_pred cCCCCcEEEEEccCC--ChHHHHH
Q 004188 708 ERIPAPKIIKCDQHG--SQARFLL 729 (770)
Q Consensus 708 ~R~~~p~~~~~~~g~--~~~r~l~ 729 (770)
+|.....+.++++|. ..+.|+.
T Consensus 76 er~g~~~i~vv~eg~~~E~~~Fw~ 99 (114)
T 1svq_A 76 ERKGLPKVEVFCETDSDIPAEFWK 99 (114)
T ss_dssp HHTTCSEEEECCCCTTCCCHHHHH
T ss_pred ccCCCccEEEEeCCCcCCcHHHHH
Confidence 666567889999998 5556644
No 35
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.00 E-value=0.0015 Score=80.67 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=101.4
Q ss_pred CcEEEEEEecCcchh--HHHHHHHHHHHHhhcCCC-CcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhhhhh
Q 004188 147 GPAFVFVVDGCMEES--EIRAVKHELLRVMEQLPE-NALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQHLM 223 (770)
Q Consensus 147 ~p~~vFvID~s~~~~--~l~~~~~~i~~~l~~lp~-~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~l 223 (770)
+.-.+||||.|.+.. .++.+++.++..++.+.+ ..|||+|+|++.++..- . + .+.
T Consensus 130 ~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~-~---------------l--t~~---- 187 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHF-T---------------F--EEF---- 187 (1095)
T ss_dssp CEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEE-C---------------S--HHH----
T ss_pred CccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEe-c---------------C--ccc----
Confidence 446899999999865 378999999999999875 48999999998775431 0 0 000
Q ss_pred cccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh-hccc---CCCCcE
Q 004188 224 GIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLL-EGCS---VNTGSR 299 (770)
Q Consensus 224 ~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll-~~~~---~~~gGk 299 (770)
.+.. .+..+++.|+.. ...+.+|.||..|...+ .... +...-.
T Consensus 188 --~~~~------------------------~l~~ai~~i~~~-------gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kv 234 (1095)
T 3k6s_A 188 --RRSS------------------------NPLSLLASVHQL-------QGFTYTATAIQNVVHRLFHASYGARRDAAKI 234 (1095)
T ss_dssp --HSCS------------------------CGGGGTTTCCCC-------CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEE
T ss_pred --CCHH------------------------HHHHHHhhhhcc-------cCCChHHHHHHHHHHhhccccccCCCCCCeE
Confidence 0000 011122223221 23578999999997744 2100 011124
Q ss_pred EEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHHHhCCcEEEEEeecCC---ccCcccccc
Q 004188 300 IMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRLIKSSIVLDLFACSLD---QVGVAELKV 376 (770)
Q Consensus 300 I~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~---~~~l~~~~~ 376 (770)
|+++++|.++..+. -+.+.+.++.+.||.|-.+..+.+ .++..+|..
T Consensus 235 iIllTDG~~~~d~~------------------------------~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~ 284 (1095)
T 3k6s_A 235 LIVITDGKKEGDSL------------------------------DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELND 284 (1095)
T ss_dssp EEEEESSCCBSCSS------------------------------CHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHT
T ss_pred EEEEeCCCcCCCch------------------------------hHHHHHHHHHHCCCEEEEEecccccccccCHHHHHH
Confidence 77888875531110 124556677777887655555544 258899999
Q ss_pred cccCcce-eEEEeCCCCh
Q 004188 377 PVEKSGG-FIMIGETFES 393 (770)
Q Consensus 377 l~~~TGG-~v~~~~~f~~ 393 (770)
+|..++| .++..++|+.
T Consensus 285 IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 285 IASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp TSCSSTTTSCCCBSCSGG
T ss_pred HHcCCCCceEEEcCCHHH
Confidence 9999887 6777777754
No 36
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=96.46 E-value=0.057 Score=62.92 Aligned_cols=213 Identities=15% Similarity=0.116 Sum_probs=110.8
Q ss_pred CCCcEEEEEEecCcchhH-HHHH---HHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhh
Q 004188 145 VLGPAFVFVVDGCMEESE-IRAV---KHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQ 220 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~~-l~~~---~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~ 220 (770)
..|-=.+|++|+|.++.. ++.+ ...|...|..+.++.|+||.+|-+..- +... ..+ +
T Consensus 109 ~~pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~---~P~~------------~~~----p 169 (690)
T 3fcs_B 109 DYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPV---SPYM------------YIS----P 169 (690)
T ss_dssp TCCEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSS---TTTS------------CCC----S
T ss_pred CCCccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeecccc---CCcc------------ccC----h
Confidence 344568899999999875 4444 445555666677899999999987551 0000 000 0
Q ss_pred hhh-cccccccccCCCCCCCCC-CcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccCCCCc
Q 004188 221 HLM-GIRCAKQHQLGKTPVIQK-QGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTGS 298 (770)
Q Consensus 221 ~~l-~v~d~~~~~~~~~~~~~~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gG 298 (770)
..+ .-+-.... ....|+. -+-.+++.+....+.+.+..+.-.. ..-.|+..+-+.+++|+--=+..++...-
T Consensus 170 ~~~~~~pc~~~~---~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~isg---n~D~PE~g~dAl~qa~~c~~~igWr~~a~ 243 (690)
T 3fcs_B 170 PEALENPCYDMK---TTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSR---NRDAPEGGFDAIMQATVCDEKIGWRNDAS 243 (690)
T ss_dssp TTTTTCTTSSSS---SCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCC---CSSSSBCHHHHHHHHHHCHHHHTCCSSSE
T ss_pred hhhccCCCcCCC---CCCCCCccceeecccCCCHHHHHHHhhceeccC---CCCCCchHHHHHHHHhhcccccCCCCCce
Confidence 111 00000000 0122221 1224678776555555555443221 33456666666666664211122345567
Q ss_pred EEEEEecCCCCC--CCCccccccccccccCCCCCCCCCCCcccchHH----HHHHHHHHHHhCCcEEEEEeecCCccCcc
Q 004188 299 RIMVFTSGPATM--GPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCA----FYKQLSDRLIKSSIVLDLFACSLDQVGVA 372 (770)
Q Consensus 299 kI~~F~sg~pt~--GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~----fY~~la~~~~~~~isvdlf~~~~~~~~l~ 372 (770)
|++||.+-.+-. |-|++...-..+...-|.+-+ .++..+.. --.+|+..+.+++|.+ ||+......+++
T Consensus 244 rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~----~~y~~s~~~DypSi~ql~~~l~~~~i~~-ifavt~~~~~~y 318 (690)
T 3fcs_B 244 HLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSD----NHYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLY 318 (690)
T ss_dssp EEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTT----CBBGGGGTSCCCCHHHHHHHHHHTTCEE-EEEEEGGGHHHH
T ss_pred EEEEEECCCccccCCCccccceecCCCcceeecCC----CccccccccCCCCHHHHHHHHHHcCCeE-EEEEeCCchhhH
Confidence 999988877764 677765543333333343211 11222211 1467778888888844 666666555543
Q ss_pred cccccc-cCcceeEEEeC
Q 004188 373 ELKVPV-EKSGGFIMIGE 389 (770)
Q Consensus 373 ~~~~l~-~~TGG~v~~~~ 389 (770)
+ .|+ ..+|+.+-...
T Consensus 319 ~--~l~~~i~~s~v~~l~ 334 (690)
T 3fcs_B 319 Q--NYSELIPGTTVGVLS 334 (690)
T ss_dssp H--HHHHHSTTCEEEEEC
T ss_pred H--HHHhhcCCceeeeec
Confidence 3 333 33455555544
No 37
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=96.35 E-value=0.23 Score=54.63 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=109.4
Q ss_pred CCCcEEEEEEecCcchhH-H---HHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhh
Q 004188 145 VLGPAFVFVVDGCMEESE-I---RAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQ 220 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~~-l---~~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~ 220 (770)
..|-=.+|++|+|.++.. + +.+...|...|..+..+.|+||.+|-+..- .+- . ....+.
T Consensus 109 ~ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v----~P~---------~--~~~p~~-- 171 (472)
T 3t3p_B 109 DYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPV----SPY---------M--YISPPE-- 171 (472)
T ss_dssp SCCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSS----TTT---------S--CCCSHH--
T ss_pred CCCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeecccc----Ccc---------c--cCChhh--
Confidence 345568899999999875 4 455555666667777899999999976541 000 0 000011
Q ss_pred hhhcccccccccCCCCCCCCC-CcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHH--HHhhcccCCCC
Q 004188 221 HLMGIRCAKQHQLGKTPVIQK-QGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAV--GLLEGCSVNTG 297 (770)
Q Consensus 221 ~~l~v~d~~~~~~~~~~~~~~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~--~ll~~~~~~~g 297 (770)
.|.-+-.... ....|+. -+..+++.+......+.+..+.-.. ..-.|+..+-+-+++|. .-+ .++...
T Consensus 172 -~l~nPc~~~~---~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSG---n~D~PEgg~dAl~qaavC~~~i--gWR~~a 242 (472)
T 3t3p_B 172 -ALENPCYDMK---TTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSR---NRDAPEGGFDAIMQATVCDEKI--GWRNDA 242 (472)
T ss_dssp -HHHCTTTTTT---SCCCCCCSEEEEEEEESCHHHHHHHHHHCCCCC---CSSSSBCHHHHHHHHHHCHHHH--TCCSSS
T ss_pred -hhcCCCcccc---cCCCCCcceeEeeccCCCHHHHHHHHhhccccC---CCCCCchHHHHHHHHhcchhhc--CCCCCc
Confidence 0110000000 0122222 1235688877666777776654332 34557777766677775 233 234556
Q ss_pred cEEEEEecCCCC--CCCCccccccccccccCCCCCCCCCCCcccchH----HHHHHHHHHHHhCCcEEEEEeecCCccCc
Q 004188 298 SRIMVFTSGPAT--MGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSC----AFYKQLSDRLIKSSIVLDLFACSLDQVGV 371 (770)
Q Consensus 298 GkI~~F~sg~pt--~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~----~fY~~la~~~~~~~isvdlf~~~~~~~~l 371 (770)
-|+++|.+-.+- .|-|++...-..+...-|-|-.. .+..+. .-..+|+..+.+++|.+ ||+......++
T Consensus 243 ~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~----~Y~~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~ 317 (472)
T 3t3p_B 243 SHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDN----HYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNL 317 (472)
T ss_dssp EEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTC----BBTTTTTSCCCCHHHHHHHHHHTTCEE-EEEECGGGHHH
T ss_pred eEEEEEECCCCcCcCCCccccceecCCCCceEECCCC----cccccccCCCCCHHHHHHHHHhcCccE-EEEEeccchhH
Confidence 799999887776 57888765543333344433110 111111 12456777777888754 77777665554
Q ss_pred c
Q 004188 372 A 372 (770)
Q Consensus 372 ~ 372 (770)
+
T Consensus 318 Y 318 (472)
T 3t3p_B 318 Y 318 (472)
T ss_dssp H
T ss_pred H
Confidence 3
No 38
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=96.04 E-value=0.0048 Score=66.20 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=36.8
Q ss_pred hcccccccccC-CC--Cccc--ccccccccCCeeEEEeCCcEEEEEEcCchh
Q 004188 629 IQPTLFQYSFD-GP--PVPV--LLDVRSISPDVILLFDSYFHVVIHYGSKIA 675 (770)
Q Consensus 629 iyP~L~~~~~~-~~--p~~v--~ls~~~l~~~~iyllD~g~~i~v~~G~~v~ 675 (770)
..|+||.++.. +. ...+ +++.+.|.++.+||||+|..||||+|+.+.
T Consensus 227 ~~~rLf~~s~~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as 278 (344)
T 2fh1_A 227 HPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQ 278 (344)
T ss_dssp CCCEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCC
T ss_pred cCCEEEEEEcCCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 67999987642 21 1222 678889999999999999999999999754
No 39
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=96.00 E-value=0.0077 Score=64.72 Aligned_cols=80 Identities=18% Similarity=0.190 Sum_probs=53.6
Q ss_pred hccccccccc-CCC--Cccc----ccccccccCCeeEEEeCC--cEEEEEEcCchhhHhhCCCCCCCcchhHHHHHhccH
Q 004188 629 IQPTLFQYSF-DGP--PVPV----LLDVRSISPDVILLFDSY--FHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPE 699 (770)
Q Consensus 629 iyP~L~~~~~-~~~--p~~v----~ls~~~l~~~~iyllD~g--~~i~v~~G~~v~~~~~~g~~~~~~~~~~~~~~~~~~ 699 (770)
-.|+||.+.. .+. ...+ +++.+.|.++.+||||+| ..||||+|+.++. + ++ +. +.
T Consensus 246 ~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~----------~-er-~~----A~ 309 (347)
T 1j72_A 246 QAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANE----------K-ER-QA----AL 309 (347)
T ss_dssp CCCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCH----------H-HH-HH----HH
T ss_pred cCCEEEEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCH----------H-HH-HH----HH
Confidence 4699999863 232 2334 789999999999999999 9999999997542 1 11 12 23
Q ss_pred HHHHHHH--HcCCCCcEEEEEccCCCh
Q 004188 700 TDAEQLV--AERIPAPKIIKCDQHGSQ 724 (770)
Q Consensus 700 ~~~~~l~--~~R~~~p~~~~~~~g~~~ 724 (770)
..|++.+ ..|.+...+.++.||.-.
T Consensus 310 ~~A~~y~~~~~rp~~~~i~~v~eG~Ep 336 (347)
T 1j72_A 310 QVAEGFISRMQYAPNTQVEILPQGRES 336 (347)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEETTCCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCCC
Confidence 3444433 246556677777787643
No 40
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=95.85 E-value=0.008 Score=65.60 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=36.6
Q ss_pred hcccccccccC-CC--Cccc-ccccccccCCeeEEEeCCcEEEEEEcCchh
Q 004188 629 IQPTLFQYSFD-GP--PVPV-LLDVRSISPDVILLFDSYFHVVIHYGSKIA 675 (770)
Q Consensus 629 iyP~L~~~~~~-~~--p~~v-~ls~~~l~~~~iyllD~g~~i~v~~G~~v~ 675 (770)
..||||..+.. |. ...+ +++.+.|.++.+||||+|..||||+|+.+.
T Consensus 281 ~~~rLf~~s~~~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as 331 (398)
T 3fg7_A 281 ITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHAN 331 (398)
T ss_dssp CCCEEEEEECTTSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCC
T ss_pred ccCeeEEEEcCCCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 57999987642 32 1222 478889999999999999999999999754
No 41
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=95.82 E-value=0.33 Score=53.00 Aligned_cols=195 Identities=14% Similarity=0.127 Sum_probs=110.3
Q ss_pred CCCcEEEEEEecCcchhH----HHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhh
Q 004188 145 VLGPAFVFVVDGCMEESE----IRAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQ 220 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~~----l~~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~ 220 (770)
..|-=.+|++|+|.++.. ++.+...|...|..+..+.|+||.+|-+..- .+ |.. ..+
T Consensus 120 ~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v----~P--------------~~~-t~p 180 (454)
T 3vi3_B 120 DYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTV----MP--------------YIS-TTP 180 (454)
T ss_dssp CCCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSS----TT--------------TSC-CST
T ss_pred CCceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEecccc----CC--------------ccc-CCh
Confidence 344557899999999875 4455556666677777899999999875431 00 000 001
Q ss_pred hhhcccccccccCCCCCCCCC-CcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccCCCCcE
Q 004188 221 HLMGIRCAKQHQLGKTPVIQK-QGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTGSR 299 (770)
Q Consensus 221 ~~l~v~d~~~~~~~~~~~~~~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gGk 299 (770)
+.+.-+-... ....|+. -+..+++.+......+.+..+.-.. ..-.|+..+-+-+++|..-=+..++. .-|
T Consensus 181 ~~~~nPC~~~----~~c~~~f~fr~~l~LT~d~~~F~~~V~~~~isG---n~D~PEgg~DAl~Qaavc~~~igWR~-a~r 252 (454)
T 3vi3_B 181 AKLRNPCTSE----QNCTTPFSYKNVLSLTNKGEVFNELVGKQRISG---NLDSPEGGFDAIMQVAVCGSLIGWRN-VTR 252 (454)
T ss_dssp TTTTCCSCSS----SCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCC---CSSSSBCHHHHHHHHHHCHHHHTCCS-SEE
T ss_pred HHhcCCCcCc----cCCCCCcceeeeeecCCCHHHHHHHHhhccccC---CCcCCchhHHHHHHHhccccccCCcc-ceE
Confidence 1110000000 0122221 1236788876666666666544322 34457777766677775321223445 789
Q ss_pred EEEEecCCCC--CCCCccccccccccccCCCCCCCCCCCcccch----HHHHHHHHHHHHhCCcEEEEEeecCCccCcc
Q 004188 300 IMVFTSGPAT--MGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKS----CAFYKQLSDRLIKSSIVLDLFACSLDQVGVA 372 (770)
Q Consensus 300 I~~F~sg~pt--~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a----~~fY~~la~~~~~~~isvdlf~~~~~~~~l~ 372 (770)
+++|.+-.+- .|-|+|-..-..+...-|-| +. .+..+ ..-..+|+..+.+++|-+ ||+.......++
T Consensus 253 llV~~TDa~fH~agDgkL~GIv~PNDg~CHL~--~~---~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y 325 (454)
T 3vi3_B 253 LLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE--NN---MYTMSHYYDYPSIAHLVQKLSENNIQT-IFAVTEEFQPVY 325 (454)
T ss_dssp EEEEEESSCBCCTTTTGGGTCCSCCCCCCCEE--TT---EECCTTTSCCCCHHHHHHHHHHTTEEE-EEEEEGGGHHHH
T ss_pred EEEEECCCCcCcCCCccccceecCCCCccEeC--CC---cccccccCCCCCHHHHHHHHHhcCCcE-EEEEcCccchHH
Confidence 9999887776 58888866544444444533 11 11111 112567888888888865 788777666554
No 42
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=95.54 E-value=0.67 Score=51.22 Aligned_cols=196 Identities=17% Similarity=0.168 Sum_probs=106.8
Q ss_pred CCCcEEEEEEecCcchhH-H---HHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhh
Q 004188 145 VLGPAFVFVVDGCMEESE-I---RAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQ 220 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~~-l---~~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~ 220 (770)
..|-=.+|++|+|.++.. + +.+...|...|..+..+.|+||.+|-+..- .+- .....+.+.
T Consensus 130 ~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v----~P~-----------~~~~p~~l~ 194 (503)
T 3v4v_B 130 GYPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTV----LPF-----------VSTVPSKLR 194 (503)
T ss_dssp SCCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSS----TTT-----------SCCCHHHHH
T ss_pred CCceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeeccccc----CCc-----------ccCCHHHhc
Confidence 445568899999999875 4 444455666677777899999999976541 100 001111111
Q ss_pred hhhcccccccccCCCCCCCCC-CcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHH--HHhhcccCCCC
Q 004188 221 HLMGIRCAKQHQLGKTPVIQK-QGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAV--GLLEGCSVNTG 297 (770)
Q Consensus 221 ~~l~v~d~~~~~~~~~~~~~~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~--~ll~~~~~~~g 297 (770)
. +-.... ....|+. -+-.+++.+......+.+..+.-.. ....|+..+.+-+++|. .-+. ++. .
T Consensus 195 ~----PC~~~~---~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSG---nlD~PEggfDAlmQaavC~~~Ig--WR~-a 261 (503)
T 3v4v_B 195 H----PCPTRL---ERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSG---NLDSPEGGFDAILQAALCQEQIG--WRN-V 261 (503)
T ss_dssp C----CSSCSS---SCCCCCCSEEEEEEEESCSHHHHHHHTTCCCCC---CSSSSBCHHHHHHHHHHCHHHHT--CCS-S
T ss_pred C----CCcCCC---CCCCCCcceEEEEEecCCHHHHHHHHhhcCccC---CCCCCchHHHHHHHHhhcccccC--CCc-c
Confidence 1 100000 0022221 1225678775555555555443221 33457777766677775 2332 334 6
Q ss_pred cEEEEEecCCCC--CCCCccccccccccccCCCCCCCCCCCcccchH----HHHHHHHHHHHhCCcEEEEEeecCCccCc
Q 004188 298 SRIMVFTSGPAT--MGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSC----AFYKQLSDRLIKSSIVLDLFACSLDQVGV 371 (770)
Q Consensus 298 GkI~~F~sg~pt--~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~----~fY~~la~~~~~~~isvdlf~~~~~~~~l 371 (770)
.|++||.+-.+- .|-|++...-..+...-|-|-+ ..+..+. .-..+|+..+.+++|.+ ||+......++
T Consensus 262 ~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~----~~Yt~s~~~DYPSv~ql~~kL~ennI~~-IFAVt~~~~~~ 336 (503)
T 3v4v_B 262 SRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSN----GLYSRSTEFDYPSVGQVAQALSAANIQP-IFAVTSAALPV 336 (503)
T ss_dssp EEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCTT----SBBGGGGGSCCCCHHHHHHHHHHHTEEE-EEEECSSSHHH
T ss_pred eEEEEEECCCCcCcCCCccccceecCCCCCeEECCC----CccccccccCCCCHHHHHHHHHhcCCeE-EEEEcccchhH
Confidence 799999887776 5778776554344334443311 1121111 12456677777778843 78887776655
Q ss_pred cc
Q 004188 372 AE 373 (770)
Q Consensus 372 ~~ 373 (770)
++
T Consensus 337 Y~ 338 (503)
T 3v4v_B 337 YQ 338 (503)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=95.50 E-value=0.008 Score=65.04 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=36.2
Q ss_pred hcccccccccC-CCC--ccc--ccccccccCCeeEEEeCCcEEEEEEcCchh
Q 004188 629 IQPTLFQYSFD-GPP--VPV--LLDVRSISPDVILLFDSYFHVVIHYGSKIA 675 (770)
Q Consensus 629 iyP~L~~~~~~-~~p--~~v--~ls~~~l~~~~iyllD~g~~i~v~~G~~v~ 675 (770)
..|+||..+.. |.. ..+ +++.+.|.++.+||||+|..||||+|+.+.
T Consensus 268 ~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as 319 (371)
T 3fg6_A 268 HPPRLYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDAN 319 (371)
T ss_dssp SCCEEEEEECTTSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCC
T ss_pred cCcEEEEEEcCCCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 35899987642 321 222 588889999999999999999999998754
No 44
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=95.03 E-value=0.075 Score=63.79 Aligned_cols=156 Identities=14% Similarity=0.178 Sum_probs=82.4
Q ss_pred CCCcEEEEEEecCcchh--------HHHHHHHHHHHHhhcCC--CCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccC
Q 004188 145 VLGPAFVFVVDGCMEES--------EIRAVKHELLRVMEQLP--ENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGREL 214 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~--------~l~~~~~~i~~~l~~lp--~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~ 214 (770)
..|--.|||||+|.++. +++.++++++..++.|. ++.|||||+|++.+... . ...|..+..+.
T Consensus 222 ~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~---~----~~~v~~~~~~~ 294 (893)
T 2ww8_A 222 SVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDG---T----EFTVEKGVADK 294 (893)
T ss_dssp TCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBS---C----EEEEECCEECT
T ss_pred CCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccc---c----ccccccccccc
Confidence 45667999999999874 35677888888887663 47899999999865320 0 00000000000
Q ss_pred ChHhhhhhhcccccccccCCCCCCCCCCcc-eEechhcHHHHHHHHHHhhcccCCCCC-----CCCCcchHHHHHHHHHH
Q 004188 215 SSEQIQHLMGIRCAKQHQLGKTPVIQKQGF-LLPVSECEFNVTTAIEEINSLTQRTPG-----HRPQRCTGAAISAAVGL 288 (770)
Q Consensus 215 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~-l~~~~e~~~~i~~ll~~l~~~~~~~~~-----~~~~~~~G~Al~~A~~l 288 (770)
+-....+.+ .-+.+.. .+......| .+|+......+..+...|+.......+ ....+.+|.||..|..+
T Consensus 295 ~g~~~n~~~-~w~~~~t----~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~l 369 (893)
T 2ww8_A 295 NGKRLNDSL-FWNYDQT----SFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEI 369 (893)
T ss_dssp TCCEECCCT-TSCTTCC----EEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHH
T ss_pred ccccccccc-ccccccc----cccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHH
Confidence 000000000 0000000 000000111 346655555566555556532100001 13457899999999999
Q ss_pred hhccc-CCCCcEEEEEecCCCCCCC
Q 004188 289 LEGCS-VNTGSRIMVFTSGPATMGP 312 (770)
Q Consensus 289 l~~~~-~~~gGkI~~F~sg~pt~Gp 312 (770)
|.... ......||+++.|.|+.+.
T Consensus 370 L~~~~~~~~~kvIILLTDG~pt~~~ 394 (893)
T 2ww8_A 370 LTQQARQNSQKVIFHITDGVPTMSY 394 (893)
T ss_dssp HHHHSCSSSEEEEEEEESSCCSEEC
T ss_pred HHhhcccCCCeEEEEEcCCCCCccc
Confidence 97322 1333468888899999653
No 45
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=94.88 E-value=0.051 Score=58.26 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=61.4
Q ss_pred cccccccccCC--CCcccccccccccCCeeEEEeCCcEEEEEEcCchhhHhhCCCCCCCcchhHHHHHhccHHHHHHHH-
Q 004188 630 QPTLFQYSFDG--PPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPETDAEQLV- 706 (770)
Q Consensus 630 yP~L~~~~~~~--~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~- 706 (770)
.|+||.+.-.. ...+|+++..+|.++.+||||+|..||+|+|+.... .++ ..+...|+.|.
T Consensus 135 ~~rL~~v~G~~~v~~~eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~-----------~Er-----~~A~~~a~~i~~ 198 (347)
T 1j72_A 135 VQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNI-----------LER-----NKARDLALAIRD 198 (347)
T ss_dssp EEEEEEEECSSSCEEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCCH-----------HHH-----HHHHHHHHHHHT
T ss_pred CcEEEEEECCCceEEEEEeeeHHHcCCCceEEEecCCEEEEEECCCCCH-----------HHH-----HHHHHHHHHHHh
Confidence 47888875221 234678899999999999999999999999986441 111 12344566775
Q ss_pred HcCCCCcEEEEEccCCChHHHHHHhh
Q 004188 707 AERIPAPKIIKCDQHGSQARFLLAKL 732 (770)
Q Consensus 707 ~~R~~~p~~~~~~~g~~~~r~l~~~L 732 (770)
.+|...+.+++++||...+.|+. .|
T Consensus 199 ~~~~g~~~v~~v~EG~E~~~Fw~-~L 223 (347)
T 1j72_A 199 SERQGKAQVEIVTDGEEPAEMIQ-VL 223 (347)
T ss_dssp TSCCSSCEEEEEETTCCCHHHHH-HH
T ss_pred hccCCCceEEEEeCCCCHHHHHH-Hh
Confidence 35667788999999987777754 44
No 46
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=94.34 E-value=0.38 Score=55.44 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=46.7
Q ss_pred CCcchHHHHHHHHHHhhcccCC-CCcEEEEEecCCCCCCCCccccccccccccCCCCCCCCCCCcccchHHHHHHHHHHH
Q 004188 274 PQRCTGAAISAAVGLLEGCSVN-TGSRIMVFTSGPATMGPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCAFYKQLSDRL 352 (770)
Q Consensus 274 ~~~~~G~Al~~A~~ll~~~~~~-~gGkI~~F~sg~pt~GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~fY~~la~~~ 352 (770)
...++|.||.+|..+++..... ..=+|++||+|--+.|. -.....-....|..+
T Consensus 139 ~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~-------------------------~~~~~~~~~~~a~~l 193 (609)
T 1jey_A 139 SDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN-------------------------DSAKASRARTKAGDL 193 (609)
T ss_dssp CCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTT-------------------------CHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCC-------------------------chHHHHHHHHHHHHH
Confidence 3578999999999999843222 24588899987433221 000112346788999
Q ss_pred HhCCcEEEEEeecCC
Q 004188 353 IKSSIVLDLFACSLD 367 (770)
Q Consensus 353 ~~~~isvdlf~~~~~ 367 (770)
.+.||.|.+|.++.+
T Consensus 194 ~~~gI~i~~igig~~ 208 (609)
T 1jey_A 194 RDTGIFLDLMHLKKP 208 (609)
T ss_dssp HHHTEEEEEEEBCCT
T ss_pred HhcCcEEEEEecCCC
Confidence 999999999987654
No 47
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=94.23 E-value=0.03 Score=66.11 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=38.0
Q ss_pred HhhcccccccccC-CCC--ccc--ccccccccCCeeEEEeCCcEEEEEEcCchh
Q 004188 627 IMIQPTLFQYSFD-GPP--VPV--LLDVRSISPDVILLFDSYFHVVIHYGSKIA 675 (770)
Q Consensus 627 ~~iyP~L~~~~~~-~~p--~~v--~ls~~~l~~~~iyllD~g~~i~v~~G~~v~ 675 (770)
....||||.++.. |.. ..+ +++.+.|.++.|||||+|..||||+|+.+.
T Consensus 610 ~~~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~ 663 (729)
T 1d0n_A 610 DAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQ 663 (729)
T ss_dssp HHSCCEEEEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSC
T ss_pred cccCCeEEEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 4568999988642 321 122 477888999999999999999999998765
No 48
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=93.23 E-value=0.9 Score=44.70 Aligned_cols=44 Identities=14% Similarity=0.266 Sum_probs=31.9
Q ss_pred cEEEEEEecCcchhH-HHHHHHH---HHHHhhcCCCCcEEEEEEECCE
Q 004188 148 PAFVFVVDGCMEESE-IRAVKHE---LLRVMEQLPENALVGLVVFDSM 191 (770)
Q Consensus 148 p~~vFvID~s~~~~~-l~~~~~~---i~~~l~~lp~~~~VglITf~~~ 191 (770)
--.+|++|+|.++.. ++.+++. |...|+.+.++.|+||.+|-+.
T Consensus 4 vDl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 4 VDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp EEEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred eEEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 347899999999875 5555544 4445555667899999999655
No 49
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=92.91 E-value=0.16 Score=59.89 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=60.9
Q ss_pred cccccccccCC--CCcccccccccccCCeeEEEeCCcEEEEEEcCchhhHhhCCCCCCCcchhHHHHHhccHHHHHHHHH
Q 004188 630 QPTLFQYSFDG--PPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIAQWKKHGYDKDPNHENLRKLLEAPETDAEQLVA 707 (770)
Q Consensus 630 yP~L~~~~~~~--~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 707 (770)
.|+||.+.-.. ....|+++.++|.++.+||||+|..||+|.|+.... .++ ..+...|+.|+.
T Consensus 133 ~~rL~~vkG~~~v~~~eV~~s~~SLns~DvFILd~g~~iy~W~G~~s~~-----------~Er-----~kA~~~a~~i~~ 196 (729)
T 1d0n_A 133 VQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNR-----------FER-----LKATQVSKGIRD 196 (729)
T ss_dssp CCEEEEEECSSSCEEEEECSSGGGCCSSSEEEEECSSEEEEEECTTCCH-----------HHH-----HHHHHHHHHHHH
T ss_pred CcEEEEEECCCcEEEEEEeccHHHcCCCCeEEEEcCCEEEEEECCCCCH-----------HHH-----HHHHHHHHHHhh
Confidence 57888775221 234678999999999999999999999999986431 122 123455667763
Q ss_pred -cCCCCcEEEEEccCCChHHHHH
Q 004188 708 -ERIPAPKIIKCDQHGSQARFLL 729 (770)
Q Consensus 708 -~R~~~p~~~~~~~g~~~~r~l~ 729 (770)
+|.....++++++|...+.|+.
T Consensus 197 ~er~g~~~i~~v~Eg~e~~eFw~ 219 (729)
T 1d0n_A 197 NERSGRAQVSVFEEGAEPEAMLQ 219 (729)
T ss_dssp HSGGGCSEEEEEETTCCCHHHHH
T ss_pred hhcCCCccEEEecCCCChHHHHH
Confidence 6766778999999987766654
No 50
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=92.76 E-value=0.13 Score=51.62 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=38.6
Q ss_pred CCcEEEEEEecCcchhH-HHHHHHHHHHHhhcCC---CCcEEEEEEECCE
Q 004188 146 LGPAFVFVVDGCMEESE-IRAVKHELLRVMEQLP---ENALVGLVVFDSM 191 (770)
Q Consensus 146 ~~p~~vFvID~s~~~~~-l~~~~~~i~~~l~~lp---~~~~VglITf~~~ 191 (770)
.|.-+||+||+|.++.. ++.+++++...+..++ ++.+||+|+|++.
T Consensus 133 ~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 133 VALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp SCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 45678999999999754 8999999999988765 4689999999964
No 51
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=91.01 E-value=0.47 Score=55.13 Aligned_cols=209 Identities=17% Similarity=0.168 Sum_probs=109.3
Q ss_pred CCCcEEEEEEecCcchhH-HH---HHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHhhh
Q 004188 145 VLGPAFVFVVDGCMEESE-IR---AVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQIQ 220 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~~-l~---~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~~~ 220 (770)
..|-=.+|++|+|.++.. ++ .+...|...|..+.++.|+||.+|-++.- +... ... +
T Consensus 102 ~ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~---~P~~------------~~~----p 162 (687)
T 3k6s_B 102 GYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTV---LPFV------------NTH----P 162 (687)
T ss_dssp CCCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSS---TTSS------------CCS----S
T ss_pred CCceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeecccc---CCcc------------ccC----c
Confidence 345668899999999875 44 44455667777788899999999986541 0000 000 1
Q ss_pred hhhcccccccccCCCCCCCCC-CcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHH--HHhhcccCCCC
Q 004188 221 HLMGIRCAKQHQLGKTPVIQK-QGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAV--GLLEGCSVNTG 297 (770)
Q Consensus 221 ~~l~v~d~~~~~~~~~~~~~~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~--~ll~~~~~~~g 297 (770)
+.|.-+-.... ....|+. -+..+++.+......+.+..+.-.. ..-.|+..+-+.++||+ .-+. ++. .
T Consensus 163 ~~~~~Pc~~~~---~~c~~~f~f~~~l~lt~~~~~F~~~v~~~~isg---n~D~PE~g~dAl~qa~vc~~~ig--Wr~-a 233 (687)
T 3k6s_B 163 DKLRNPCPNKE---KECQPPFAFRHVLKLTNNSNQFQTEVGKQLISG---NLDAPEGGLDAMMQVAACPEEIG--WRN-V 233 (687)
T ss_dssp TTTTCCCCSCC---CCCCCCCSCEEEEEEESCSHHHHHHHHTSCCCC---CSSSSCCHHHHHHHHTTCHHHHC--CCS-S
T ss_pred hhccCCCCCCC---CCcCCcccceeecccCCCHHHHHHHHhhccccC---CCCCCchHHHHHHHHhhcccccC--Ccc-c
Confidence 11110000000 0012221 2235677776555566666554321 33456666666666663 3332 345 7
Q ss_pred cEEEEEecCCCCC--CCCccccccccccccCCCCCCCCCCCcccchHH----HHHHHHHHHHhCCcEEEEEeecCCccCc
Q 004188 298 SRIMVFTSGPATM--GPGIIVDTEFSKAIRNHGDVMNGHAPYYRKSCA----FYKQLSDRLIKSSIVLDLFACSLDQVGV 371 (770)
Q Consensus 298 GkI~~F~sg~pt~--GpG~l~~~~~~~~~~s~~d~~~~~~~~~~~a~~----fY~~la~~~~~~~isvdlf~~~~~~~~l 371 (770)
-|++||.+-.+-. |-|+|...-.++...-|.+ .. .+..+.. --.+|+.++.+++|.+ ||+.....+++
T Consensus 234 ~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~--~~---~y~~s~~~DyPS~~ql~~~l~~~~I~~-ifavt~~~~~~ 307 (687)
T 3k6s_B 234 TRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLE--DN---LYKRSNEFDYPSVGQLAHKLAENNIQP-IFAVTSRMVKT 307 (687)
T ss_dssp CCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCS--SS---BCSSGGGSCCCCGGGHHHHHHHTTCBC-CEEECGGGHHH
T ss_pred eEEEEEECCCccccCCCccccceecCCCCccccC--CC---ccccccccCCCCHHHHHHHHHHcCCeE-EEEEeccchhh
Confidence 8999998877764 6777655433333333432 11 1111111 1245667777778843 56665555544
Q ss_pred ccccccc-cCcceeEEEeC
Q 004188 372 AELKVPV-EKSGGFIMIGE 389 (770)
Q Consensus 372 ~~~~~l~-~~TGG~v~~~~ 389 (770)
++ .|+ ..+|+.+-...
T Consensus 308 y~--~l~~~i~~s~v~~L~ 324 (687)
T 3k6s_B 308 YE--KLTEIIPKSAVGELS 324 (687)
T ss_dssp HH--HHHHHSSSCCEEECC
T ss_pred HH--HHHhhcCCceeeeec
Confidence 33 333 23445444443
No 52
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=90.88 E-value=0.88 Score=51.59 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=61.4
Q ss_pred CCCcEEEEEEecCcchhH------HHHHHHHHHHHhhcCCCCcEEEEEEECCEEEEEEcCCCCceeeeeecCCccCChHh
Q 004188 145 VLGPAFVFVVDGCMEESE------IRAVKHELLRVMEQLPENALVGLVVFDSMVYVHDLGFSECCRVLVFHGGRELSSEQ 218 (770)
Q Consensus 145 ~~~p~~vFvID~s~~~~~------l~~~~~~i~~~l~~lp~~~~VglITf~~~V~~y~l~~~~~~~~~v~~g~~~~~~~~ 218 (770)
+.+..++|+||+|.++.. +.....+....+..+.++.+||+|+|++.+...
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~~----------------------- 422 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPC----------------------- 422 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEECC-----------------------
T ss_pred CCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceEc-----------------------
Confidence 456789999999998752 222222122223333456689999999633110
Q ss_pred hhhhhcccccccccCCCCCCCCCCcceEechhcHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccCCCCc
Q 004188 219 IQHLMGIRCAKQHQLGKTPVIQKQGFLLPVSECEFNVTTAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTGS 298 (770)
Q Consensus 219 ~~~~l~v~d~~~~~~~~~~~~~~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gG 298 (770)
.++ + .. . +..+++.|.... ...+.+|.||..|...- ....
T Consensus 423 -----~~t------------~---------~~--~-l~~~l~~l~~~~------~GgT~i~~aL~~a~~~~-----~~~~ 462 (538)
T 1yvr_A 423 -----PIT------------V---------NM--L-LHEVVEKMSDIT------MGSTDCALPMLWAQKTN-----TAAD 462 (538)
T ss_dssp -----SCC------------T---------TS--C-HHHHHHHHTTCC------CSCCCTTHHHHHHHHTT-----CCCS
T ss_pred -----CCC------------C---------cc--c-HHHHHHHHhcCC------CCCCcHHHHHHHHHhcc-----CCCC
Confidence 000 0 00 1 345556665432 13467889999988752 4558
Q ss_pred EEEEEecCCCCCC
Q 004188 299 RIMVFTSGPATMG 311 (770)
Q Consensus 299 kI~~F~sg~pt~G 311 (770)
.|+++++|..+.|
T Consensus 463 ~iIliTDg~~~~g 475 (538)
T 1yvr_A 463 IFIVFTDCETNVE 475 (538)
T ss_dssp EEEEEECCCCCSS
T ss_pred EEEEEcCCCCCCC
Confidence 8999999876554
No 53
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=90.22 E-value=0.31 Score=51.96 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=36.9
Q ss_pred cccccccccCC----CCcccccccccccCCeeEEEeCCcEEEEEEcCchh
Q 004188 630 QPTLFQYSFDG----PPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIA 675 (770)
Q Consensus 630 yP~L~~~~~~~----~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~ 675 (770)
-|+||.+.-+. ....|+++..+|.++.+||||+|..||+|+|+...
T Consensus 124 ~~rL~~v~g~~~~~~~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s~ 173 (344)
T 2fh1_A 124 STRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGAS 173 (344)
T ss_dssp SSEEEEEEECTTCCEEEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCC
T ss_pred CceEEEEECCCCCceEEEEecCchhhcCCCceEEEecCCEEEEEECCCCC
Confidence 47888886322 12467789999999999999999999999998644
No 54
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=88.95 E-value=0.55 Score=50.58 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=36.8
Q ss_pred cccccccccCC----CCcccccccccccCCeeEEEeCC-cEEEEEEcCchh
Q 004188 630 QPTLFQYSFDG----PPVPVLLDVRSISPDVILLFDSY-FHVVIHYGSKIA 675 (770)
Q Consensus 630 yP~L~~~~~~~----~p~~v~ls~~~l~~~~iyllD~g-~~i~v~~G~~v~ 675 (770)
-|+||.+.-.. ....|+++.++|.++.+||||+| ..||+|.|+...
T Consensus 165 ~~rL~~vrg~~~~~vr~~EV~~~~ssLns~d~FILd~~~~~iyvW~G~~ss 215 (371)
T 3fg6_A 165 PTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGAS 215 (371)
T ss_dssp CCEEEEEECCSSSCCEEEEECSSGGGCBTTSEEEEECTTSEEEEEECTTCC
T ss_pred ccEEEEEeccCCCceEEEEecCCHHHccCCCeEEEEcCCCeEEEEECCCCC
Confidence 57898885321 12457889999999999999999 999999998643
No 55
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=82.29 E-value=0.26 Score=53.56 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred cccccccccCC----CCcccccccccccCCeeEEEeCCcEEEEEEcCchh
Q 004188 630 QPTLFQYSFDG----PPVPVLLDVRSISPDVILLFDSYFHVVIHYGSKIA 675 (770)
Q Consensus 630 yP~L~~~~~~~----~p~~v~ls~~~l~~~~iyllD~g~~i~v~~G~~v~ 675 (770)
.|+||.+.-.. .-..|+++..+|.++.+||||+|..||+|.|+...
T Consensus 178 ~~rLf~VrG~~~~~~ra~EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss 227 (398)
T 3fg7_A 178 STRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCS 227 (398)
T ss_dssp --------------------------------------------------
T ss_pred CcEEEEEECCCCCceEEEEecCCHHHccCCceEEEEeCCeEEEEeCCCCC
Confidence 46787774221 23467889999999999999999999999999765
No 56
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=76.33 E-value=4.6 Score=45.58 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=28.0
Q ss_pred HHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhhcccCCCCcEEEEEecCCCCCC
Q 004188 257 TAIEEINSLTQRTPGHRPQRCTGAAISAAVGLLEGCSVNTGSRIMVFTSGPATMG 311 (770)
Q Consensus 257 ~ll~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~gGkI~~F~sg~pt~G 311 (770)
.+++.|.... ...+.++.||..|.... .....|+++++|.-+.|
T Consensus 428 ~~l~~l~~~~------~ggTdi~~~l~~a~~~~-----~~~~~vIliTD~~~~~g 471 (535)
T 2nvo_A 428 SAMQKAQSVS------FGGTDCAQPILWAAQER-----LDVDTFVVYTDNETWAG 471 (535)
T ss_dssp HHHHHTCCSS------BCCCCTTHHHHHHHHTT-----CCCSEEEEEESSCCCCC
T ss_pred HHHHHHhhCC------CCCccHHHHHHHHHHhc-----CCCCEEEEEeCCCccCC
Confidence 4555664432 13467888887776543 45688999998865554
No 57
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=76.03 E-value=0.7 Score=34.92 Aligned_cols=28 Identities=21% Similarity=0.782 Sum_probs=20.5
Q ss_pred CCccCCCCCeeEcCceEEecCCCeEEecCCCC
Q 004188 52 DPLICSKCGAVLNPYGRVDYASRIWTCPFCYG 83 (770)
Q Consensus 52 ~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~ 83 (770)
..--|.||++++.- ....-+|+|++|-+
T Consensus 32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 32 QTKFCARCGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp CCEECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred CCeeecccCCEeee----cCCeEEEEehhhhh
Confidence 34568999998764 33456899999964
No 58
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=76.01 E-value=0.6 Score=37.28 Aligned_cols=20 Identities=25% Similarity=0.788 Sum_probs=17.6
Q ss_pred CCeEEecCCCCCCCCCcCCC
Q 004188 73 SRIWTCPFCYGKNPFPRSYS 92 (770)
Q Consensus 73 ~~~w~C~~C~~~N~~p~~y~ 92 (770)
...|+|++|...|.+|.+|.
T Consensus 15 ~~tWVCpICsfsN~v~s~fd 34 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFT 34 (76)
T ss_dssp CEEEECTTTCCEEEESSCCC
T ss_pred ccceECccccccCcCccccC
Confidence 45799999999999998884
No 59
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=70.49 E-value=1.1 Score=38.32 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=26.6
Q ss_pred CCccCCCCCeeEcCceEEecCCCeEEecCCCCCCCCCcCC
Q 004188 52 DPLICSKCGAVLNPYGRVDYASRIWTCPFCYGKNPFPRSY 91 (770)
Q Consensus 52 ~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~p~~y 91 (770)
-|.+|.+|+--+ .+.-++.-+|+.|++.|-.++.|
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCCCE
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCCCccCCcce
Confidence 478999999754 23445668999999999876655
No 60
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=66.79 E-value=2.5 Score=33.72 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=23.4
Q ss_pred CCccCCCCCeeEcCceEEecCCCeEEecCCCCCCCC
Q 004188 52 DPLICSKCGAVLNPYGRVDYASRIWTCPFCYGKNPF 87 (770)
Q Consensus 52 ~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~ 87 (770)
-++||. |+++ .-.+.+.+.-+|+ ||+.-.+
T Consensus 3 ~vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 3 IIFRCD-CGRA----LYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEEET-TSCC----EEEETTCSEEEET-TTEEEEC
T ss_pred EEEECC-CCCE----EEEcCCCcEEECC-CCCeeee
Confidence 468999 9996 5566667777899 9988665
No 61
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=61.30 E-value=12 Score=27.31 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=23.3
Q ss_pred CccCCCCCeeEcCceEEecCCCeEEecCCCCC
Q 004188 53 PLICSKCGAVLNPYGRVDYASRIWTCPFCYGK 84 (770)
Q Consensus 53 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 84 (770)
...|..|++ .-..++.....++|.-||..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 467999998 34567777789999999985
No 62
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=60.32 E-value=5.2 Score=32.93 Aligned_cols=30 Identities=27% Similarity=0.641 Sum_probs=22.4
Q ss_pred CccCCCCCeeEcCceEEecCCCeEEecCCCCCCC
Q 004188 53 PLICSKCGAVLNPYGRVDYASRIWTCPFCYGKNP 86 (770)
Q Consensus 53 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~ 86 (770)
.-.|..|++- ..+..+...|.|..|++...
T Consensus 27 ~y~Cp~CG~~----~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGED----RVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCE----EEEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCc----ceeccCCCeEECCCCCCEec
Confidence 3579999983 34555567999999998753
No 63
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=50.97 E-value=24 Score=35.14 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=35.2
Q ss_pred HHHHHHHhCCcEEEEEeecC-C---ccCcccccccccCcceeEEEeCC
Q 004188 347 QLSDRLIKSSIVLDLFACSL-D---QVGVAELKVPVEKSGGFIMIGET 390 (770)
Q Consensus 347 ~la~~~~~~~isvdlf~~~~-~---~~~l~~~~~l~~~TGG~v~~~~~ 390 (770)
+.|+.+.+.||.|..+.+.. + .-|..+|..+|..|||.-|....
T Consensus 29 ~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 29 EAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP 76 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG
T ss_pred HHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH
Confidence 56778889999999998843 3 44678899999999999887643
No 64
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=48.88 E-value=3.6 Score=29.83 Aligned_cols=9 Identities=44% Similarity=1.232 Sum_probs=5.5
Q ss_pred eEEecCCCC
Q 004188 75 IWTCPFCYG 83 (770)
Q Consensus 75 ~w~C~~C~~ 83 (770)
.|+|+.|+.
T Consensus 30 dw~CP~Cg~ 38 (46)
T 6rxn_A 30 DWCCPVCGV 38 (46)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 366666664
No 65
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=47.94 E-value=6.3 Score=30.89 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=28.6
Q ss_pred CCCccCCCCCeeEcCceEEecCCCeEEecCCCCC
Q 004188 51 YDPLICSKCGAVLNPYGRVDYASRIWTCPFCYGK 84 (770)
Q Consensus 51 ~~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 84 (770)
..+..|.+|++--.|..+-...|. ..||-|+..
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~ 39 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 39 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHH
Confidence 357899999999999999998886 999999743
No 66
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=45.69 E-value=4.5 Score=33.54 Aligned_cols=32 Identities=28% Similarity=0.707 Sum_probs=17.3
Q ss_pred CccCCCCCeeEcCc-----------eEEecCCCeEEecCCCCC
Q 004188 53 PLICSKCGAVLNPY-----------GRVDYASRIWTCPFCYGK 84 (770)
Q Consensus 53 p~RC~~C~ayiNp~-----------~~~~~~~~~w~C~~C~~~ 84 (770)
.-+|..|+=...|- ..|++--..|+|+.|+..
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 45677777444432 233333334777777753
No 67
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=44.36 E-value=5.5 Score=28.40 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=25.3
Q ss_pred CccCCCCCeeEcCceEEecCCCeEEecCCCC
Q 004188 53 PLICSKCGAVLNPYGRVDYASRIWTCPFCYG 83 (770)
Q Consensus 53 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~ 83 (770)
|..|.+|++--.|..+-...|. -.||-||-
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHH
Confidence 4679999999999999888776 88999984
No 68
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=40.34 E-value=5.7 Score=29.57 Aligned_cols=9 Identities=44% Similarity=1.460 Sum_probs=4.7
Q ss_pred eEEecCCCC
Q 004188 75 IWTCPFCYG 83 (770)
Q Consensus 75 ~w~C~~C~~ 83 (770)
.|+|+.|+.
T Consensus 35 dw~CP~Cg~ 43 (52)
T 1yk4_A 35 DWVCPLCGA 43 (52)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 355555554
No 69
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=38.90 E-value=8.9 Score=37.25 Aligned_cols=25 Identities=24% Similarity=0.733 Sum_probs=17.1
Q ss_pred CccCCCCCeeEcCceEEecCCCeEEecCCCCC
Q 004188 53 PLICSKCGAVLNPYGRVDYASRIWTCPFCYGK 84 (770)
Q Consensus 53 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 84 (770)
.-+|..|+-.... ...|+||+|+..
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 3578888855432 234999999875
No 70
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.53 E-value=10 Score=30.50 Aligned_cols=31 Identities=23% Similarity=0.654 Sum_probs=22.0
Q ss_pred ccCCCCCeeEcCceEEecCCCeEEecCCCCC
Q 004188 54 LICSKCGAVLNPYGRVDYASRIWTCPFCYGK 84 (770)
Q Consensus 54 ~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 84 (770)
..|..|+-=+.--|.+...+..|.|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 4566666666666666665578999999764
No 71
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.18 E-value=18 Score=26.57 Aligned_cols=25 Identities=24% Similarity=0.743 Sum_probs=18.2
Q ss_pred ccCCCCCe--eEcCceEEecCCCeEEecCCCCC
Q 004188 54 LICSKCGA--VLNPYGRVDYASRIWTCPFCYGK 84 (770)
Q Consensus 54 ~RC~~C~a--yiNp~~~~~~~~~~w~C~~C~~~ 84 (770)
-.|.+|++ ++-+ ...+|.|.=|+..
T Consensus 20 k~CP~CG~~~fm~~------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMAD------HGDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEEE------CSSEEECSSSCCE
T ss_pred ccCCCCCCceEEec------CCCeEECCCCCCE
Confidence 45999998 4332 2468999999864
No 72
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=36.87 E-value=7.6 Score=30.83 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=4.8
Q ss_pred eEEecCCCCC
Q 004188 75 IWTCPFCYGK 84 (770)
Q Consensus 75 ~w~C~~C~~~ 84 (770)
+|+|..|+..
T Consensus 7 ~y~C~vCGyi 16 (70)
T 1dx8_A 7 KYECEACGYI 16 (70)
T ss_dssp CEEETTTCCE
T ss_pred eEEeCCCCEE
Confidence 4555555543
No 73
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=36.68 E-value=7.6 Score=29.12 Aligned_cols=9 Identities=44% Similarity=1.320 Sum_probs=4.9
Q ss_pred eEEecCCCC
Q 004188 75 IWTCPFCYG 83 (770)
Q Consensus 75 ~w~C~~C~~ 83 (770)
.|+|+.|+.
T Consensus 36 dw~CP~Cg~ 44 (54)
T 4rxn_A 36 DWVCPLCGV 44 (54)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 355555554
No 74
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.47 E-value=11 Score=27.85 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=20.4
Q ss_pred CCccCCCCCeeEcCceEEecCCCeEEecCCCCCCC
Q 004188 52 DPLICSKCGAVLNPYGRVDYASRIWTCPFCYGKNP 86 (770)
Q Consensus 52 ~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~ 86 (770)
..-.|.+|++- .+.+.|.|-=||+.|-
T Consensus 13 ~k~iCpkC~a~--------~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGAT--------NPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCE--------ECTTCSSCSSSSSCCC
T ss_pred CCccCCCCCCc--------CCCCceecCCCCCccc
Confidence 44578999886 3356899999999864
No 75
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=35.44 E-value=6.9 Score=29.12 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=6.4
Q ss_pred eEEecCCCCCC
Q 004188 75 IWTCPFCYGKN 85 (770)
Q Consensus 75 ~w~C~~C~~~N 85 (770)
+|+|..||..-
T Consensus 3 ~y~C~~CGyvY 13 (52)
T 1e8j_A 3 IYVCTVCGYEY 13 (52)
T ss_dssp CEECSSSCCCC
T ss_pred cEEeCCCCeEE
Confidence 46666666553
No 76
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=35.16 E-value=10 Score=33.48 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=26.4
Q ss_pred ccCCCCCeeEcCc----eEEecCC---CeEEecCCCCCCCCC
Q 004188 54 LICSKCGAVLNPY----GRVDYAS---RIWTCPFCYGKNPFP 88 (770)
Q Consensus 54 ~RC~~C~ayiNp~----~~~~~~~---~~w~C~~C~~~N~~p 88 (770)
--|.+|++++=|- +++..++ -.++|..||+...+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 3699999998775 4445442 467899999988776
No 77
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=34.22 E-value=7.9 Score=31.61 Aligned_cols=8 Identities=50% Similarity=1.593 Sum_probs=4.2
Q ss_pred EEecCCCC
Q 004188 76 WTCPFCYG 83 (770)
Q Consensus 76 w~C~~C~~ 83 (770)
|+|+.|+.
T Consensus 61 W~CPvCga 68 (81)
T 2kn9_A 61 WSCPDCGA 68 (81)
T ss_dssp CCCTTTCC
T ss_pred CcCCCCCC
Confidence 55555554
No 78
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.78 E-value=9 Score=28.85 Aligned_cols=10 Identities=30% Similarity=0.736 Sum_probs=4.6
Q ss_pred eEEecCCCCC
Q 004188 75 IWTCPFCYGK 84 (770)
Q Consensus 75 ~w~C~~C~~~ 84 (770)
+|+|..||..
T Consensus 3 ~y~C~~CGyv 12 (55)
T 2v3b_B 3 KWQCVVCGFI 12 (55)
T ss_dssp EEEETTTCCE
T ss_pred cEEeCCCCeE
Confidence 3444444443
No 79
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=32.22 E-value=24 Score=27.04 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=23.5
Q ss_pred CCccCCCCCeeEcCceEEecCCCeEEecCCCCCCCC--CcCCCCCC
Q 004188 52 DPLICSKCGAVLNPYGRVDYASRIWTCPFCYGKNPF--PRSYSSIA 95 (770)
Q Consensus 52 ~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~--p~~y~~~~ 95 (770)
.+.+|.+|+.|== +=+|+.||..+.. |..|++-|
T Consensus 5 ~mr~C~~CgvYTL----------k~~CP~CG~~T~~~hParfSp~D 40 (60)
T 2apo_B 5 RMKKCPKCGLYTL----------KEICPKCGEKTVIPKPPKFSLED 40 (60)
T ss_dssp CCEECTTTCCEES----------SSBCSSSCSBCBCCCCCCCCTTC
T ss_pred hceeCCCCCCEec----------cccCcCCCCcCCCCCCCCCCCCc
Confidence 4678999998743 3569999987654 44555433
No 80
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.06 E-value=11 Score=34.87 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=20.1
Q ss_pred ccCCCCCeeEcCceEE-ecCCCeEEecCCCCCC
Q 004188 54 LICSKCGAVLNPYGRV-DYASRIWTCPFCYGKN 85 (770)
Q Consensus 54 ~RC~~C~ayiNp~~~~-~~~~~~w~C~~C~~~N 85 (770)
..|..|+-.++--|.+ ......|.|.+|...-
T Consensus 86 ~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~r 118 (153)
T 2zet_C 86 RQCLECSLFVCKSCSHAHPEEQGWLCDPCHLAR 118 (153)
T ss_dssp EECTTTCCEECGGGEECCSSSSSCEEHHHHHHH
T ss_pred CcCCCCCchhhcccccccCCCCcEeeHHHHHHH
Confidence 3555555555555553 2345689999998654
No 81
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=29.79 E-value=7.9 Score=28.00 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=25.7
Q ss_pred CccCCCCCeeEcCceEEecCCCeEEecCCCCC
Q 004188 53 PLICSKCGAVLNPYGRVDYASRIWTCPFCYGK 84 (770)
Q Consensus 53 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~ 84 (770)
+..|.+|++--.|..+-...|. ..||-|+..
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 34 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGH-YLCNACGLY 34 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCC-ccchHHHHH
Confidence 4679999999999988888775 789988753
No 82
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=28.74 E-value=19 Score=31.62 Aligned_cols=28 Identities=32% Similarity=0.706 Sum_probs=20.2
Q ss_pred CccCCCCCeeEcCceEEecCCCeE-EecCCCCCCC
Q 004188 53 PLICSKCGAVLNPYGRVDYASRIW-TCPFCYGKNP 86 (770)
Q Consensus 53 p~RC~~C~ayiNp~~~~~~~~~~w-~C~~C~~~N~ 86 (770)
-.||..|+..... ..... .||-|++.+.
T Consensus 73 ~~~C~~CG~~~e~------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 73 ELECKDCSHVFKP------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EEECSSSSCEECS------CCSTTCCCSSSSSCCC
T ss_pred eEEcCCCCCEEeC------CCCCCCcCccccCCCc
Confidence 3689999887655 23457 8999998864
No 83
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=28.62 E-value=20 Score=32.25 Aligned_cols=33 Identities=18% Similarity=0.639 Sum_probs=21.2
Q ss_pred ccCCCCCeeEcCceEEec----CCCeEEecCCCCCCC
Q 004188 54 LICSKCGAVLNPYGRVDY----ASRIWTCPFCYGKNP 86 (770)
Q Consensus 54 ~RC~~C~ayiNp~~~~~~----~~~~w~C~~C~~~N~ 86 (770)
..|..|+-.+..-|.... ....|.|.+|...-.
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 456666666666555543 235899999987643
No 84
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=28.41 E-value=17 Score=34.85 Aligned_cols=27 Identities=19% Similarity=0.512 Sum_probs=18.0
Q ss_pred CccCCCCCeeEcCceEEec-CCCeEEecCCC
Q 004188 53 PLICSKCGAVLNPYGRVDY-ASRIWTCPFCY 82 (770)
Q Consensus 53 p~RC~~C~ayiNp~~~~~~-~~~~w~C~~C~ 82 (770)
..+|.+|++ .|..-.. ....++|+||+
T Consensus 134 l~~C~~Cgg---~fv~~~~~~~~~f~Cp~C~ 161 (192)
T 2avu_E 134 LSSCNCCGG---NFITHAHQPVGSFACSLCQ 161 (192)
T ss_dssp EEECTTTCC---EEEEESSCCSSCCCCTTC-
T ss_pred eCcCCCCCC---CeeCccCCCCCCCcCCCCC
Confidence 578999997 3332222 34689999999
No 85
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=25.77 E-value=15 Score=30.30 Aligned_cols=15 Identities=33% Similarity=0.882 Sum_probs=12.7
Q ss_pred CeEEecCCCCCCCCC
Q 004188 74 RIWTCPFCYGKNPFP 88 (770)
Q Consensus 74 ~~w~C~~C~~~N~~p 88 (770)
..|.|+||++.+.+.
T Consensus 22 t~F~CPfCnh~~sV~ 36 (85)
T 1wii_A 22 TQFTCPFCNHEKSCD 36 (85)
T ss_dssp SCCCCTTTCCSSCEE
T ss_pred CeEcCCCCCCCCeEE
Confidence 579999999998763
No 86
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=25.63 E-value=15 Score=41.38 Aligned_cols=20 Identities=25% Similarity=0.788 Sum_probs=0.0
Q ss_pred CCeEEecCCCCCCCCCcCCC
Q 004188 73 SRIWTCPFCYGKNPFPRSYS 92 (770)
Q Consensus 73 ~~~w~C~~C~~~N~~p~~y~ 92 (770)
...|+|++|...|++|.++.
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~ 134 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFT 134 (566)
T ss_dssp --------------------
T ss_pred ccceeccccccCCCCCCCCC
Confidence 45799999999999998774
No 87
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=24.24 E-value=17 Score=32.19 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=26.4
Q ss_pred ccCCCCCeeEcCc----eEEecCC---CeEEecCCCCCCCCC
Q 004188 54 LICSKCGAVLNPY----GRVDYAS---RIWTCPFCYGKNPFP 88 (770)
Q Consensus 54 ~RC~~C~ayiNp~----~~~~~~~---~~w~C~~C~~~N~~p 88 (770)
--|.+|++++=|- +++..++ -.++|..||+...+|
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 3699999998765 4455442 467899999988776
No 88
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=23.65 E-value=20 Score=23.66 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.5
Q ss_pred CeEEecCCCCCCCC
Q 004188 74 RIWTCPFCYGKNPF 87 (770)
Q Consensus 74 ~~w~C~~C~~~N~~ 87 (770)
.-|.|+-|+..|.-
T Consensus 4 gDW~C~~C~~~Nfa 17 (32)
T 2lk0_A 4 EDWLCNKCCLNNFR 17 (32)
T ss_dssp SEEECTTTCCEEET
T ss_pred CCCCcCcCcCCcCh
Confidence 36999999999853
No 89
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.03 E-value=41 Score=29.76 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=22.0
Q ss_pred CCccCCCCCeeEcCceEEecCCCeEEecCCCCCC
Q 004188 52 DPLICSKCGAVLNPYGRVDYASRIWTCPFCYGKN 85 (770)
Q Consensus 52 ~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N 85 (770)
..+.|.+|.+ .|.--+ |..|+|+-|++.-
T Consensus 26 ~lP~CP~C~s---eytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNS---EYTYED--GALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCC---CCCEEC--SSSEEETTTTEEE
T ss_pred cCCCCCCCCC---cceEec--CCeEECCcccccc
Confidence 4578999986 555544 5679999999864
No 90
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=22.65 E-value=18 Score=31.65 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=26.1
Q ss_pred CccCCCCCeeEcCceEEecCCCeEEecCCCC
Q 004188 53 PLICSKCGAVLNPYGRVDYASRIWTCPFCYG 83 (770)
Q Consensus 53 p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~ 83 (770)
+..|.+|++---|..+-+..| .+.||-|+.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl 34 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG-HYLCNACGL 34 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred CCCCCCCCCccCCcceECCCC-CCcCcchhh
Confidence 467999999999999998877 699999984
No 91
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=22.00 E-value=24 Score=32.96 Aligned_cols=34 Identities=3% Similarity=-0.113 Sum_probs=27.2
Q ss_pred ccCCCCC-----eeEcCceEEecC------CCeEEecCCCCCCCC
Q 004188 54 LICSKCG-----AVLNPYGRVDYA------SRIWTCPFCYGKNPF 87 (770)
Q Consensus 54 ~RC~~C~-----ayiNp~~~~~~~------~~~w~C~~C~~~N~~ 87 (770)
++|.+|+ -|||++-+.+-. +-.|+|.+|++.+.+
T Consensus 38 vkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 38 IRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp EEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred EEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 7899998 578888887742 447999999998875
No 92
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.82 E-value=34 Score=24.51 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=15.2
Q ss_pred CeEEecCCCCCCCCCcCCC
Q 004188 74 RIWTCPFCYGKNPFPRSYS 92 (770)
Q Consensus 74 ~~w~C~~C~~~N~~p~~y~ 92 (770)
..|+|.-|++.|.-...|+
T Consensus 12 D~WkC~~C~~~N~Pl~r~C 30 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHC 30 (46)
T ss_dssp GCEECTTTCCEECSSCSSC
T ss_pred ceEecccccccCCCccchh
Confidence 4799999999997655664
No 93
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=20.86 E-value=24 Score=26.68 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=23.1
Q ss_pred CccCCCCCeeEcCceEEe------cCCCeEEecCCCCCCC
Q 004188 53 PLICSKCGAVLNPYGRVD------YASRIWTCPFCYGKNP 86 (770)
Q Consensus 53 p~RC~~C~ayiNp~~~~~------~~~~~w~C~~C~~~N~ 86 (770)
|-.|..|+--..--..+. .+.+.|.|+.|+..-.
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 567888887655444432 2567899999998754
No 94
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.65 E-value=35 Score=24.94 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=15.3
Q ss_pred CeEEecCCCCCCCCCcCCC
Q 004188 74 RIWTCPFCYGKNPFPRSYS 92 (770)
Q Consensus 74 ~~w~C~~C~~~N~~p~~y~ 92 (770)
..|+|.-|++.|.-...|+
T Consensus 10 D~WkC~~C~k~N~Pl~ryC 28 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKRYC 28 (53)
T ss_dssp CCEECSSSCCEECSSCCBC
T ss_pred ceeecccccccCCCccchh
Confidence 4799999999997656664
No 95
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=20.57 E-value=2.7e+02 Score=24.32 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhcCCC---CcEEEEEEECCEE
Q 004188 163 IRAVKHELLRVMEQLPE---NALVGLVVFDSMV 192 (770)
Q Consensus 163 l~~~~~~i~~~l~~lp~---~~~VglITf~~~V 192 (770)
.+.++++|+.-+..-|. +.+|-+++||+.|
T Consensus 112 Ae~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V 144 (147)
T 1b3t_A 112 AEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGV 144 (147)
T ss_dssp HHHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCcceEEEEEeCCCCc
Confidence 46788888887776663 6899999999876
No 96
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=20.42 E-value=31 Score=22.34 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=12.8
Q ss_pred CCeEEecCCCCCCCCC
Q 004188 73 SRIWTCPFCYGKNPFP 88 (770)
Q Consensus 73 ~~~w~C~~C~~~N~~p 88 (770)
+..|.|+.|...|.-.
T Consensus 4 ~~~W~C~~CTf~N~~~ 19 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPG 19 (31)
T ss_dssp SCCEECSSSCCEECSS
T ss_pred CccccCCcccccCCCC
Confidence 4579999999999754
No 97
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.14 E-value=95 Score=24.42 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=24.0
Q ss_pred CCccCCCCCeeEcCceEEecCCCeEEecCCCCCCCC
Q 004188 52 DPLICSKCGAVLNPYGRVDYASRIWTCPFCYGKNPF 87 (770)
Q Consensus 52 ~p~RC~~C~ayiNp~~~~~~~~~~w~C~~C~~~N~~ 87 (770)
++..|..|++=+ .++.....-+|..|+..-++
T Consensus 7 ~iL~CP~ck~~L----~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 7 DILVCPVCKGRL----EFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCCBCTTTCCBE----EEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcC----EEeCCCCEEEcCCCCceecC
Confidence 568999999933 34555668999999987665
No 98
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.08 E-value=21 Score=25.67 Aligned_cols=9 Identities=44% Similarity=1.040 Sum_probs=5.8
Q ss_pred EEecCCCCC
Q 004188 76 WTCPFCYGK 84 (770)
Q Consensus 76 w~C~~C~~~ 84 (770)
-+|+.||..
T Consensus 24 IrCpyCGyr 32 (48)
T 4ayb_P 24 VRCPYCGYK 32 (48)
T ss_dssp SCCTTTCCS
T ss_pred cccCccCcE
Confidence 567777654
Done!