Query 004190
Match_columns 770
No_of_seqs 342 out of 1919
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 19:06:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 6E-166 1E-170 1464.8 71.3 737 22-762 24-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 4E-142 9E-147 1266.0 63.6 647 47-759 32-758 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 1.1E-64 2.4E-69 558.4 24.1 311 77-432 56-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 2.9E-60 6.2E-65 510.7 18.5 265 61-353 1-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 3.2E-48 7E-53 420.0 20.7 243 80-357 54-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 1.8E-38 3.9E-43 328.9 12.8 215 394-626 1-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 9.2E-20 2E-24 153.6 7.1 69 686-755 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.1 0.023 5E-07 50.3 7.5 63 667-752 18-82 (101)
9 PF10633 NPCBM_assoc: NPCBM-as 95.3 0.058 1.3E-06 46.1 6.8 66 667-751 4-73 (78)
10 PF12690 BsuPI: Intracellular 93.3 0.54 1.2E-05 40.7 8.4 69 670-750 2-81 (82)
11 PF14874 PapD-like: Flagellar- 88.6 3.6 7.8E-05 36.6 9.4 75 668-748 20-94 (102)
12 COG0486 ThdF Predicted GTPase 88.6 10 0.00022 43.0 14.7 96 243-357 60-171 (454)
13 COG1470 Predicted membrane pro 81.2 6 0.00013 44.7 8.4 75 668-756 284-361 (513)
14 COG1470 Predicted membrane pro 78.8 8.8 0.00019 43.3 8.7 81 668-764 397-484 (513)
15 PF13473 Cupredoxin_1: Cupredo 76.1 8.6 0.00019 34.5 6.6 51 671-753 44-94 (104)
16 cd00407 Urease_beta Urease bet 73.8 7.8 0.00017 34.6 5.4 51 670-724 20-82 (101)
17 PRK13203 ureB urease subunit b 73.8 7.5 0.00016 34.8 5.3 51 670-724 20-82 (102)
18 PRK13202 ureB urease subunit b 73.4 8 0.00017 34.7 5.3 51 670-724 21-83 (104)
19 PRK13201 ureB urease subunit b 72.7 7.1 0.00015 36.5 5.1 52 669-724 19-82 (136)
20 PF00699 Urease_beta: Urease b 71.3 8.5 0.00018 34.3 5.0 52 669-724 18-81 (100)
21 TIGR00192 urease_beta urease, 71.2 9.7 0.00021 34.0 5.3 51 670-724 20-82 (101)
22 PF00345 PapD_N: Pili and flag 70.1 12 0.00026 34.5 6.2 54 671-727 17-73 (122)
23 PF05506 DUF756: Domain of unk 68.3 29 0.00062 30.3 7.9 46 671-727 21-67 (89)
24 PF14796 AP3B1_C: Clathrin-ada 66.3 17 0.00038 35.0 6.4 55 668-727 85-140 (145)
25 PF06280 DUF1034: Fn3-like dom 64.6 54 0.0012 29.7 9.3 60 669-728 9-81 (112)
26 PRK13205 ureB urease subunit b 62.3 16 0.00035 34.9 5.3 51 670-724 20-82 (162)
27 PRK13204 ureB urease subunit b 62.0 16 0.00035 35.0 5.3 51 670-724 43-105 (159)
28 PF07385 DUF1498: Protein of u 61.5 15 0.00032 37.8 5.2 56 675-736 111-177 (225)
29 PRK13198 ureB urease subunit b 58.6 20 0.00044 34.4 5.3 51 670-724 48-110 (158)
30 PF09624 DUF2393: Protein of u 58.1 22 0.00048 34.2 5.8 61 667-727 61-133 (149)
31 PF06030 DUF916: Bacterial pro 57.7 35 0.00076 31.8 6.7 58 668-727 27-103 (121)
32 PF04744 Monooxygenase_B: Mono 57.6 21 0.00046 39.3 5.9 56 667-726 262-334 (381)
33 TIGR01759 MalateDH-SF1 malate 55.0 9.6 0.00021 41.8 3.0 59 473-535 75-135 (323)
34 PF00927 Transglut_C: Transglu 54.8 29 0.00063 31.2 5.6 60 668-728 15-77 (107)
35 PRK13192 bifunctional urease s 50.4 28 0.00061 35.1 5.0 51 670-724 129-191 (208)
36 COG1160 Predicted GTPases [Gen 49.9 36 0.00079 38.7 6.4 46 469-527 75-120 (444)
37 PF00056 Ldh_1_N: lactate/mala 49.9 5.7 0.00012 38.0 0.2 55 473-534 65-123 (141)
38 COG0039 Mdh Malate/lactate deh 49.2 14 0.0003 40.3 3.0 58 473-535 65-124 (313)
39 TIGR01756 LDH_protist lactate 47.8 11 0.00023 41.3 1.9 59 473-535 56-116 (313)
40 PRK09918 putative fimbrial cha 47.0 50 0.0011 34.4 6.6 46 671-725 41-92 (230)
41 PF14016 DUF4232: Protein of u 46.8 63 0.0014 30.3 6.7 59 669-727 19-82 (131)
42 PRK13986 urease subunit alpha; 44.8 39 0.00084 34.6 5.1 51 670-724 125-187 (225)
43 PRK06096 molybdenum transport 42.1 2E+02 0.0044 30.9 10.4 31 179-210 106-136 (284)
44 PLN00135 malate dehydrogenase 39.7 23 0.0005 38.6 2.9 58 473-535 54-114 (309)
45 cd01338 MDH_choloroplast_like 39.4 23 0.0005 38.9 2.9 57 473-535 74-134 (322)
46 cd00938 HisRS_RNA HisRS_RNA bi 38.8 70 0.0015 24.5 4.4 31 329-359 13-43 (45)
47 PF06165 Glyco_transf_36: Glyc 38.2 18 0.00039 33.0 1.5 57 615-692 31-87 (110)
48 PRK00286 xseA exodeoxyribonucl 38.1 1.6E+02 0.0035 33.7 9.6 58 466-535 179-238 (438)
49 TIGR01772 MDH_euk_gproteo mala 37.6 32 0.0007 37.6 3.6 56 473-534 63-121 (312)
50 PRK05442 malate dehydrogenase; 37.5 21 0.00046 39.2 2.2 57 473-535 76-136 (326)
51 PF06858 NOG1: Nucleolar GTP-b 37.4 86 0.0019 25.4 5.0 44 475-527 11-55 (58)
52 PF05753 TRAP_beta: Translocon 37.0 2E+02 0.0043 28.8 8.8 84 667-755 37-127 (181)
53 PF03032 Brevenin: Brevenin/es 37.0 17 0.00037 27.9 0.9 17 3-19 6-22 (46)
54 cd00300 LDH_like L-lactate deh 36.2 22 0.00049 38.5 2.1 58 473-535 62-121 (300)
55 cd03708 GTPBP_III Domain III o 35.3 2.4E+02 0.0052 24.0 8.1 76 669-752 5-82 (87)
56 PRK05086 malate dehydrogenase; 34.8 30 0.00064 37.8 2.8 56 473-534 65-123 (312)
57 TIGR01757 Malate-DH_plant mala 34.5 22 0.00047 40.1 1.7 57 473-535 116-176 (387)
58 PRK13533 7-cyano-7-deazaguanin 33.7 43 0.00094 38.9 4.0 47 275-322 75-121 (487)
59 PLN00112 malate dehydrogenase 33.6 26 0.00056 40.2 2.1 58 473-535 172-232 (444)
60 TIGR01451 B_ant_repeat conserv 32.8 57 0.0012 25.6 3.4 20 667-686 11-30 (53)
61 cd00704 MDH Malate dehydrogena 32.7 29 0.00063 38.1 2.3 60 472-535 71-132 (323)
62 cd01337 MDH_glyoxysomal_mitoch 32.2 35 0.00075 37.3 2.8 57 473-534 64-122 (310)
63 TIGR03096 nitroso_cyanin nitro 31.9 1.4E+02 0.003 28.5 6.4 17 711-727 94-110 (135)
64 PF01345 DUF11: Domain of unkn 31.5 54 0.0012 27.4 3.3 20 667-686 40-59 (76)
65 PRK05848 nicotinate-nucleotide 31.4 3.5E+02 0.0075 29.0 10.1 29 179-210 103-131 (273)
66 cd01336 MDH_cytoplasmic_cytoso 31.3 36 0.00079 37.4 2.8 59 473-535 74-134 (325)
67 TIGR01758 MDH_euk_cyt malate d 30.9 36 0.00078 37.4 2.7 57 473-535 71-131 (324)
68 PF11906 DUF3426: Protein of u 30.4 1.7E+02 0.0036 27.9 6.9 60 668-727 68-136 (149)
69 cd05294 LDH-like_MDH_nadp A la 30.0 44 0.00095 36.4 3.1 58 473-535 68-127 (309)
70 TIGR01763 MalateDH_bact malate 29.9 36 0.00077 37.0 2.4 54 475-535 67-124 (305)
71 TIGR00237 xseA exodeoxyribonuc 29.6 2.9E+02 0.0062 31.7 9.7 57 467-535 174-233 (432)
72 PF06205 GT36_AF: Glycosyltran 29.2 44 0.00095 29.4 2.4 26 700-727 59-84 (90)
73 COG2003 RadC DNA repair protei 29.2 35 0.00076 35.2 2.0 99 175-292 105-210 (224)
74 TIGR01771 L-LDH-NAD L-lactate 29.1 31 0.00067 37.4 1.8 56 473-535 60-119 (299)
75 PLN02602 lactate dehydrogenase 28.7 35 0.00077 37.9 2.2 58 473-535 101-160 (350)
76 cd01857 HSR1_MMR1 HSR1/MMR1. 28.0 1.1E+02 0.0025 28.6 5.3 18 469-486 3-20 (141)
77 TIGR03079 CH4_NH3mon_ox_B meth 26.6 1.3E+02 0.0028 33.3 5.8 56 667-726 281-353 (399)
78 PRK15249 fimbrial chaperone pr 26.6 1.4E+02 0.0031 31.5 6.1 54 671-726 45-103 (253)
79 PRK00066 ldh L-lactate dehydro 26.1 46 0.00099 36.4 2.4 56 473-535 69-128 (315)
80 PRK09926 putative chaperone pr 25.8 1.6E+02 0.0034 31.1 6.2 54 671-726 42-99 (246)
81 PF09851 SHOCT: Short C-termin 25.4 1.4E+02 0.0029 20.8 3.8 25 327-351 6-30 (31)
82 PRK15188 fimbrial chaperone pr 25.3 1.6E+02 0.0035 30.6 6.1 50 671-726 44-97 (228)
83 cd09030 DUF1425 Putative perip 24.9 3.2E+02 0.0069 24.3 7.3 58 668-727 32-90 (101)
84 PF00553 CBM_2: Cellulose bind 24.6 1.2E+02 0.0026 27.1 4.4 18 666-683 11-28 (101)
85 cd05291 HicDH_like L-2-hydroxy 24.6 45 0.00098 36.1 2.1 55 474-535 65-123 (306)
86 cd05290 LDH_3 A subgroup of L- 24.3 41 0.00089 36.6 1.6 58 473-535 64-125 (307)
87 PTZ00325 malate dehydrogenase; 24.1 53 0.0012 36.0 2.5 58 472-535 71-131 (321)
88 COG0832 UreB Urea amidohydrola 23.2 57 0.0012 29.1 2.0 52 669-724 19-82 (106)
89 PF07233 DUF1425: Protein of u 23.1 3E+02 0.0065 24.3 6.6 59 667-727 23-82 (94)
90 TIGR01334 modD putative molybd 22.6 5.9E+02 0.013 27.3 9.9 31 179-210 105-135 (277)
91 PF11611 DUF4352: Domain of un 22.6 1.5E+02 0.0033 26.8 4.9 61 667-727 35-101 (123)
92 TIGR00450 mnmE_trmE_thdF tRNA 22.4 5.1E+02 0.011 29.8 10.1 35 244-279 51-90 (442)
93 PHA00691 hypothetical protein 22.1 92 0.002 24.8 2.7 18 736-753 11-30 (68)
94 PRK15295 fimbrial assembly cha 22.1 2.4E+02 0.0052 29.3 6.7 51 671-726 36-90 (226)
95 PRK13534 7-cyano-7-deazaguanin 21.9 1.4E+02 0.003 36.1 5.5 47 275-322 74-120 (639)
96 PF10087 DUF2325: Uncharacteri 21.8 2.3E+02 0.005 24.9 5.7 40 471-525 42-81 (97)
97 cd05293 LDH_1 A subgroup of L- 21.1 56 0.0012 35.7 1.9 54 474-534 68-125 (312)
98 PRK13555 azoreductase; Provisi 21.0 2.2E+02 0.0048 29.1 6.1 38 468-516 80-117 (208)
99 cd06557 KPHMT-like Ketopantoat 20.9 7.2E+02 0.016 26.3 10.0 18 276-293 28-45 (254)
100 PRK13556 azoreductase; Provisi 20.9 2.5E+02 0.0053 28.5 6.5 37 469-516 81-117 (208)
101 PF00703 Glyco_hydro_2: Glycos 20.8 2.6E+02 0.0057 24.2 6.0 64 668-736 18-81 (110)
102 PLN00106 malate dehydrogenase 20.5 76 0.0017 34.8 2.8 56 472-533 81-139 (323)
103 PRK15224 pili assembly chapero 20.5 2.4E+02 0.0052 29.6 6.3 49 671-726 45-97 (237)
104 PRK15246 fimbrial assembly cha 20.4 2.7E+02 0.0059 29.1 6.7 54 671-726 27-84 (233)
105 PF08530 PepX_C: X-Pro dipepti 20.2 2.3E+02 0.005 28.7 6.2 57 668-727 96-162 (218)
106 PF09544 DUF2381: Protein of u 20.0 4.8E+02 0.01 28.2 8.7 58 668-727 202-260 (289)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=5.9e-166 Score=1464.75 Aligned_cols=737 Identities=50% Similarity=0.949 Sum_probs=645.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCHHHHHHHhcCCCCCCCCCCCchhhhHhhhhccccccCCCc
Q 004190 22 LAAREPFACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGT 101 (770)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~rv~~ll~~MTleEKi~ql~~~~~~~~rlgip~~~~~~~~~~g~~~~~~g~ 101 (770)
.....+.+|+ +.+...+||||+++++++|+++||++||||||++||.+.+.+++|||||.+.||+|++||++..++|+
T Consensus 24 ~~~~~~~~c~--~~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~d~~hGv~~~~~g~ 101 (779)
T PLN03080 24 ADAHPQFPCK--PPTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNGPGV 101 (779)
T ss_pred ccCCCCcCCC--CccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceecccccccccCCCcc
Confidence 3335667797 35677799999999999999999999999999999998889999999999999999999998888888
Q ss_pred ccC-CCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHhhcCCCCcceEecccccccCCCCCCccCCCCCCChHHHH
Q 004190 102 KFG-GDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLSG 180 (770)
Q Consensus 102 ~~~-~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~g~~G~~~laP~~dl~r~p~~gr~~e~fgeDP~l~~ 180 (770)
++. +.+.++|.||++|++|||||++|++++|+++|+|+|+++|.+..|+++|+|++||+|||||||++|||||||+|++
T Consensus 102 ~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~ 181 (779)
T PLN03080 102 SFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVAS 181 (779)
T ss_pred ccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccCcCCCHHHHH
Confidence 774 3345789999999999999999999999999999999976655577889999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC---------CCcceeEEeecccccccCCCCCCCcccccccccCHHHHHhhccHHHHHHHHcCCccE
Q 004190 181 KYAASYVRGLQGSD---------GDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVAS 251 (770)
Q Consensus 181 ~~~~a~v~G~Q~~~---------g~~~~v~a~~KHFpg~~~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~ai~~g~~~~ 251 (770)
+|+.|||+|+|+.. .++.+|+||+||||||+++.+.+..|...++.+++++|+|+||+||++||++|.+++
T Consensus 182 ~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~ 261 (779)
T PLN03080 182 AYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASC 261 (779)
T ss_pred HHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeE
Confidence 99999999999821 123469999999999999877777888889999999999999999999999998889
Q ss_pred EEecccCCCCcccccCHHHHHHhhhcccccceEEEcCchhhccccccccccCChHHHHHHHHHcCCCcCCCcchhHHHHH
Q 004190 252 VMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFLGLHTES 331 (770)
Q Consensus 252 vM~sy~~vng~pa~~s~~ll~~lLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~~~~l~~ 331 (770)
||||||++||+|||.|++||++ ||+||||+|+|||||++|..+.+.|++..+.+|++++||+||+||+|...+.+.|.+
T Consensus 262 VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~ 340 (779)
T PLN03080 262 LMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQS 340 (779)
T ss_pred EEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHH
Confidence 9999999999999999999986 999999999999999999999888888788999999999999999998877789999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCccCChhhHHHHHHHHhhceeeeccCCCCCCcccCCc
Q 004190 332 AVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGPSLPLSHIRH 411 (770)
Q Consensus 332 av~~G~i~~~~ld~av~RiL~~k~~~Gl~~~~p~~~~~~~~~~~~v~~~~h~~la~~aA~esiVLLKN~~~~LPL~~~~~ 411 (770)
||++|+|+|++||+||+|||++|+++|+|+.+|...+|.++....+++++|+++|+|+|++|||||||++++|||++.+.
T Consensus 341 av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~ 420 (779)
T PLN03080 341 AIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEV 420 (779)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCC
Confidence 99999999999999999999999999999954433345554456788999999999999999999999999999987655
Q ss_pred ceEEEEccCCCCceeecccccccCCCcCCHHHHHHhhh-eeeeeeccCcccCCchhhHHHHHHHhhccCEEEEEeCCCcc
Q 004190 412 RTVAVIGPNSDVTVTMIGNYAGIACGYTTPLQGIGRYA-RTIHQQGCKDVACADDQLFGAAIDASRQADATILVMGLDQS 490 (770)
Q Consensus 412 ~kIaviG~~a~~~~~~~G~~~g~~~~~~t~~~gl~~~~-~~~~~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~vG~~~~ 490 (770)
++|+||||+|+....++|+|++.+++.++++++|+++. .+.|..||....+.+...+++++++|++||+|||++|.+..
T Consensus 421 ~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~ 500 (779)
T PLN03080 421 SSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLS 500 (779)
T ss_pred CEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCcc
Confidence 79999999999988888889998889999999999975 57899998655444556788999999999999999999988
Q ss_pred ccccccccCCCCCChhHHHHHHHHHhhCCCCEEEEEecCCeeeeccccCCCCcceEEeccCCCchhHHHHHHHHcCCCCC
Q 004190 491 IEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNP 570 (770)
Q Consensus 491 ~~~Eg~Dr~~l~Lp~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~e~g~AladVL~G~~nP 570 (770)
.++|+.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+.+.++++||||+|||||++|+|+||||||++||
T Consensus 501 ~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnP 580 (779)
T PLN03080 501 QETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNP 580 (779)
T ss_pred ccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCC
Confidence 89999999999999999999999998777899999999999999998766789999999999999999999999999999
Q ss_pred CcccccccCCccccCCCCccccCCCCCCCCCCCCCcccccCCCcccccCcCCCCCCceecccccCccccccCCC--C-CC
Q 004190 571 GGKLPMTWYPQEYITNLPMTEMAMRPSQSKRYPGRTYRFYKGPVVYPFGHGMSYTNFVHTVANAPTVVAVPLDG--R-HG 647 (770)
Q Consensus 571 sGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~lypFG~GLSYTtF~ys~~~~~~~~~~~~~~--~-~~ 647 (770)
|||||+||||+++ .++|++++++++++..+|++++||||+.+|+||||||||||||+|++++++..+.++... . +.
T Consensus 581 sGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~ 659 (779)
T PLN03080 581 GGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSIS 659 (779)
T ss_pred CCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEeccccccccccccccccccccc
Confidence 9999999988886 579998888887666778999999999999999999999999999998754322121100 0 00
Q ss_pred ccccccccc---cccccc-ccCCceeEEEEEEEEeCCCCCcceEEEEEEeCCCC-CCCcccccccccceecCCCCeEEEE
Q 004190 648 SINATISGK---AIKVTH-AKCNRLTLGVQVDVKNVGSKDGAHTLLVFSTPPAG-HWAPHKQLVAFEKVHVPAGAQQRVG 722 (770)
Q Consensus 648 ~~~~~~~~~---~~~~~~-~~~~~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~-~~~P~k~L~gF~kv~L~pGes~~V~ 722 (770)
......... ...... ..|++..++|+|+|||||+++|+||||||+++|.+ ..+|+|||+||+||+|+|||+++|+
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~ 739 (779)
T PLN03080 660 RKPLLQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETE 739 (779)
T ss_pred cccccccccccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEE
Confidence 000000000 000000 12332369999999999999999999999999976 5689999999999999999999999
Q ss_pred EEeccCCCeeEEeCCCcEEeeCeEEEEEEeCCCCeEEEEE
Q 004190 723 INIHVCKYLSVVDRSGTRRIPLGEHNIHIGGTKHSVSLHA 762 (770)
Q Consensus 723 ~~l~~~~~ls~~d~~~~~~~~~G~y~~~vG~ss~~~~~~~ 762 (770)
|+|+++++|++||++++|++|+|+|+|+||+++|+++|++
T Consensus 740 ~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 740 IVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred EEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 9999656899999999999999999999999999999874
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=4.3e-142 Score=1265.99 Aligned_cols=647 Identities=30% Similarity=0.508 Sum_probs=554.4
Q ss_pred CChHHHHHHHHhcCCHHHHHHHhcCCCC--------------------------------------CCCCCCCchhhhHh
Q 004190 47 LPIPQRVNDLIGRLSLQEKVKLLISGAA--------------------------------------AVPRLGIKGYEWWS 88 (770)
Q Consensus 47 ~~~~~rv~~ll~~MTleEKi~ql~~~~~--------------------------------------~~~rlgip~~~~~~ 88 (770)
.+.++|++++|++||||||++||++... ..+|+|||.+ +..
T Consensus 32 ~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~~~~~~~~giP~l-i~~ 110 (765)
T PRK15098 32 EARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQVMQLSRLKIPLF-FAY 110 (765)
T ss_pred cCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHHHhhCCCCCCCee-EEE
Confidence 4788999999999999999999986310 0246788877 566
Q ss_pred hhhccccccCCCcccCCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHhhcCCCCcceE-ecccccccCCCCCCc
Q 004190 89 EALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTY-WSPNVNIFRDPRWGR 167 (770)
Q Consensus 89 ~~~~g~~~~~~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~g~~G~~~-laP~~dl~r~p~~gr 167 (770)
|++||. .|.||++++||||||++|++++|+++|+|+|++ |+|+ |+|++||+|||+|||
T Consensus 111 D~e~G~---------------~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~------Gin~~laPv~Dv~r~p~~gr 169 (765)
T PRK15098 111 DVVHGQ---------------RTVFPISLGLASSWDLDAVATVGRVSAYEAADD------GLNMTWAPMVDISRDPRWGR 169 (765)
T ss_pred eCCCCc---------------cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCCEEeeCcccccCCCCccc
Confidence 666663 588999999999999999999999999999999 8998 999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHHhhcCCC--CcceeEEeecccccccCCCCCCCcccccccccCHHHHHhhccHHHHHHHH
Q 004190 168 GQETPGEDPVLSGKYAASYVRGLQGSDG--DRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVM 245 (770)
Q Consensus 168 ~~e~fgeDP~l~~~~~~a~v~G~Q~~~g--~~~~v~a~~KHFpg~~~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~ai~ 245 (770)
++|+|||||+++++|+.|||+|+|+ ++ ...+|++|+|||||||..+ .+|...++.+++++|+|+||+||+++|+
T Consensus 170 ~~rsfgeDP~lv~~~~~a~v~GlQ~-~~~~~~~gV~a~~KHFpG~g~~~---~~~~~~~~~~~~~~l~e~~l~PF~~ai~ 245 (765)
T PRK15098 170 ASEGFGEDTYLTSIMGKTMVKAMQG-KSPADRYSVMTSVKHFALYGAVE---GGRDYNTVDMSPQRMFNDYLPPYKAGLD 245 (765)
T ss_pred cccCcCCCHHHHHHHHHHHHHHHcC-CCCCCCCCEEEECcEEeCCCCcc---cCccCccCcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 41 1224999999999999542 2344456678999999999999999999
Q ss_pred cCCccEEEecccCCCCcccccCHHHHHHhhhcccccceEEEcCchhhccccccccccCChHHHHHHHHHcCCCcCCCcc-
Q 004190 246 EGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPF- 324 (770)
Q Consensus 246 ~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~- 324 (770)
+| +++||||||.+||+|||+|+++|+++||+||||+|+|||||++|..+.. |++..+.+|++++||+||+||+|.+.
T Consensus 246 ag-~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ea~~~Al~AG~Dl~m~~~~ 323 (765)
T PRK15098 246 AG-SGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPEDAVRLALKSGIDMSMSDEY 323 (765)
T ss_pred hC-CCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHHHHHHHHHHcCCCcccCchh
Confidence 88 5699999999999999999999999999999999999999999998874 66777889999999999999999754
Q ss_pred hhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCC-------CCccCChhhHHHHHHHHhhceeee
Q 004190 325 LGLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLG-------PKDVCTPDHQELALEAARQGIVLL 397 (770)
Q Consensus 325 ~~~~l~~av~~G~i~~~~ld~av~RiL~~k~~~Gl~~~~p~~~~~~~~~-------~~~v~~~~h~~la~~aA~esiVLL 397 (770)
+.+.|.++|++|+|++++||+||+|||++|+++|+|+ +| |.+.. ...+.+++|+++++++|++|||||
T Consensus 324 ~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p----~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLL 398 (765)
T PRK15098 324 YSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DP----YSHLGPKESDPVDTNAESRLHRKEAREVARESLVLL 398 (765)
T ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CC----ccccccccccccccccCCHHHHHHHHHHHHhcEEEE
Confidence 3467999999999999999999999999999999998 44 32211 123457899999999999999999
Q ss_pred ccCCCCCCcccCCcceEEEEccCCCCceeeccccc--ccCCCcCCHHHHHHhhh----eeeeeeccCcccC---------
Q 004190 398 KNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYA--GIACGYTTPLQGIGRYA----RTIHQQGCKDVAC--------- 462 (770)
Q Consensus 398 KN~~~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~--g~~~~~~t~~~gl~~~~----~~~~~~g~~~~~~--------- 462 (770)
||++++|||++. +||+|+||+++....+.|+|+ +.+.+.+|+++||+++. .+.|..||.....
T Consensus 399 KN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~ 476 (765)
T PRK15098 399 KNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQ 476 (765)
T ss_pred ecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhc
Confidence 999999999854 599999999988766677775 56778899999999874 5788888742110
Q ss_pred ----------CchhhHHHHHHHhhccCEEEEEeCCCccccccccccCCCCCChhHHHHHHHHHhhCCCCEEEEEecCCee
Q 004190 463 ----------ADDQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPI 532 (770)
Q Consensus 463 ----------~~~~~~~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~li~~v~~~~~~pvIvVl~~g~P~ 532 (770)
.+...+++++++|++||++||++|.+...++|+.||.+|.||+.|.+||+++++. ++|||||+++|+|+
T Consensus 477 ~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~-~~~vVvVl~~g~P~ 555 (765)
T PRK15098 477 YEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT-GKPLVLVLMNGRPL 555 (765)
T ss_pred cccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh-CcCEEEEEeCCcee
Confidence 1234578899999999999999999888899999999999999999999999864 67999999999999
Q ss_pred eeccccCCCCcceEEeccCCCchhHHHHHHHHcCCCCCCcccccccCCccccCCCCccccCCC---CCCCCCCCCCcccc
Q 004190 533 DVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYPQEYITNLPMTEMAMR---PSQSKRYPGRTYRF 609 (770)
Q Consensus 533 ~l~~~~~~~~v~AiL~a~~~G~e~g~AladVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~---~~~~~~~~g~~Yr~ 609 (770)
+|+|+. ++++|||++|+||+++|+|+||||||++|||||||+|| |++. +++|.++.... .+.+..+.+.+|||
T Consensus 556 ~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~~~~y~e~~~~~y~yry 631 (765)
T PRK15098 556 ALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSV-GQIPVYYNHLNTGRPYNPDKPNKYTSRY 631 (765)
T ss_pred eccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCC-CcCccccccCCCCCccccCcccccccce
Confidence 999874 48999999999999999999999999999999999998 5554 56887543221 11111112235899
Q ss_pred cCC--CcccccCcCCCCCCceecccccCccccccCCCCCCcccccccccccccccccCCceeEEEEEEEEeCCCCCcceE
Q 004190 610 YKG--PVVYPFGHGMSYTNFVHTVANAPTVVAVPLDGRHGSINATISGKAIKVTHAKCNRLTLGVQVDVKNVGSKDGAHT 687 (770)
Q Consensus 610 ~~~--~~lypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~eV 687 (770)
|+. +|+||||||||||+|+|+++++.+.. .. .++.++|+|+|||||+++|+||
T Consensus 632 ~d~~~~plypFG~GLSYT~F~ys~l~v~~~~---~~----------------------~~~~i~v~v~V~NtG~~~G~EV 686 (765)
T PRK15098 632 FDEANGPLYPFGYGLSYTTFTVSDVKLSSPT---MK----------------------RDGKVTASVTVTNTGKREGATV 686 (765)
T ss_pred eccCCCccccccCCCCCccEEeeccEecccc---cc----------------------CCCeEEEEEEEEECCCCCccEE
Confidence 986 49999999999999999998843210 00 1257999999999999999999
Q ss_pred EEEEEeCCCC-CCCcccccccccceecCCCCeEEEEEEeccCCCeeEEeCCCcEEeeCeEEEEEEeCCCCeEE
Q 004190 688 LLVFSTPPAG-HWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGEHNIHIGGTKHSVS 759 (770)
Q Consensus 688 vQlYv~~~~~-~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~~~vG~ss~~~~ 759 (770)
||||+++|.+ ..+|.|||+||+||+|+|||+++|+|+|+. ++|++||++++|++|+|+|+|+||+||++++
T Consensus 687 vQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v~vG~ss~d~~ 758 (765)
T PRK15098 687 VQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNVFIGLDSARVK 758 (765)
T ss_pred EEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEEEEECCCCccc
Confidence 9999999887 578999999999999999999999999998 7999999999999999999999999999764
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-64 Score=558.36 Aligned_cols=311 Identities=33% Similarity=0.556 Sum_probs=266.5
Q ss_pred CCCCCchhhhHhhhhccccccCCCcccCCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHhhcCCCCcceE-ecc
Q 004190 77 PRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTY-WSP 155 (770)
Q Consensus 77 ~rlgip~~~~~~~~~~g~~~~~~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~g~~G~~~-laP 155 (770)
+|++||.+ +..|..+|..+ ++. .++|.||+++++||+||+++++++|+++|+|+|++ |+|+ |+|
T Consensus 56 ~r~~ipll-i~~D~egG~v~-----r~~---~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~------Gin~~fAP 120 (397)
T COG1472 56 ARLGIPLL-IAIDQEGGRVQ-----RLR---EGFTVFPAALALAATWDPELARKVGRVIAKELRAL------GINLDFAP 120 (397)
T ss_pred hccCCCeE-EEEecCCCeee-----ecc---CCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc------CCCccccc
Confidence 47888887 45666666532 111 25899999999999999999999999999999999 9998 999
Q ss_pred cccccCCCCCCccCCC-CCCChHHHHHHHHHHHHHhhcCCCCcceeEEeecccccccCCCCCCCcccccccccCHHHHHh
Q 004190 156 NVNIFRDPRWGRGQET-PGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIED 234 (770)
Q Consensus 156 ~~dl~r~p~~gr~~e~-fgeDP~l~~~~~~a~v~G~Q~~~g~~~~v~a~~KHFpg~~~~~~~~~~r~~~~~~~~~~~l~e 234 (770)
|+||.|||+|||..|+ |||||++++.|+.|||+|||+ .| |++|+|||||||..+ .+++..+..++++.|+|
T Consensus 121 vlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~-~g----v~at~KHFpGhG~~~---~dsh~~~~~v~~~~L~e 192 (397)
T COG1472 121 VLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQG-AG----VAATIKHFPGHGAVE---GDSHYGLLPIDPRALRE 192 (397)
T ss_pred eeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhh-CC----ceeeeccccCCCCCc---CCcccccCCCChHHHHH
Confidence 9999999999998888 999999999999999999999 78 999999999998543 22332226789999999
Q ss_pred hccHHHHHHHHcCC--ccEEEecccCCCCcccccCHHHHHHhhhcccccceEEEcCchhhccccccccccCChHHHHHHH
Q 004190 235 TFDVPFRMCVMEGK--VASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADA 312 (770)
Q Consensus 235 ~~l~PF~~ai~~g~--~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~a 312 (770)
+|++||+.+++.+. +.++|++||.+||.|||.|+++|++|||++|||+|+|||||++|+++...| .+..+++..+
T Consensus 193 ~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~---g~~~d~~~~a 269 (397)
T COG1472 193 LYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAH---GSAADRAEAA 269 (397)
T ss_pred hhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhc---cCHHHHHHHH
Confidence 99999999999995 679999999999999999999999999999999999999999999876543 3566778889
Q ss_pred HHcCCCcCCCcc-hh-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCccCChhhHHHHHHHH
Q 004190 313 IRAGLDLDCGPF-LG-LHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAA 390 (770)
Q Consensus 313 l~AG~D~~~~~~-~~-~~l~~av~~G~i~~~~ld~av~RiL~~k~~~Gl~~~~p~~~~~~~~~~~~v~~~~h~~la~~aA 390 (770)
++||+||+|.+. .. ..+..+...+ ++++++|++++|||++|+++|+|+ +| |.. +|++++++++
T Consensus 270 l~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~----~~~---------~~~~~a~~~~ 334 (397)
T COG1472 270 LKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-NP----YSS---------EHRALAREAA 334 (397)
T ss_pred HhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CC----Cch---------hhHHHHHHHH
Confidence 999999998633 32 3344444445 999999999999999999999999 54 221 8999999999
Q ss_pred hhceeeeccCCCCCCcccCCcceEEEEccCCCCceeeccccc
Q 004190 391 RQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYA 432 (770)
Q Consensus 391 ~esiVLLKN~~~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~ 432 (770)
++|+|||||+..+|||+ ...++|+++||+++.. . |+|+
T Consensus 335 ~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 335 RESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred HHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 99999999998999999 4456999999999987 5 6665
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=2.9e-60 Score=510.73 Aligned_cols=265 Identities=32% Similarity=0.520 Sum_probs=213.1
Q ss_pred CHHHHHHHhcCC----------------------------CCCCCCCCCchhhhHhhhhccccccCCCcccCCCCCCCcc
Q 004190 61 SLQEKVKLLISG----------------------------AAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATS 112 (770)
Q Consensus 61 TleEKi~ql~~~----------------------------~~~~~rlgip~~~~~~~~~~g~~~~~~g~~~~~~~~~~t~ 112 (770)
||||||+||++. ....+++|||.+ +..|+++|+... .+ .+.|.
T Consensus 1 TleeKigQl~~~~~~~i~~~~vGgv~~~~~~~~~~~~~~~~~~~~~~~iP~~-i~~D~egG~~~~-----~~---~~~t~ 71 (299)
T PF00933_consen 1 TLEEKIGQLFMELKELIKEYHVGGVILPEQLKQLTQSLQAISEQSRLGIPLL-IAIDQEGGIVQR-----LG---GGFTA 71 (299)
T ss_dssp -HHHHHHHTEEHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHCCGCGTCT-E-EEEEETTSTTTS-----TT---TTS--
T ss_pred CHHHHHHHHHHHHHHHHhcCCccEEEcHHHHHHHHHHHHHHhhccccCCCeE-EEEcCCCceEec-----CC---CcCcc
Confidence 899999999931 123568999987 567888876421 11 12699
Q ss_pred ccccccccccCCHHHHHHHHHHHHHHHHHhhcCCCCcceE-ecccccccCCCCCCccCCCCCCChHHHHHHHHHHHHHhh
Q 004190 113 FPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQ 191 (770)
Q Consensus 113 fP~~~~laat~d~~l~~~~g~~~g~E~ra~~~~g~~G~~~-laP~~dl~r~p~~gr~~e~fgeDP~l~~~~~~a~v~G~Q 191 (770)
||+++++|||||+++++++|..+|+|++++ |+|+ |||++||.|+|+|||+.|+|||||+++++|+.|||+|+|
T Consensus 72 ~P~~~~l~at~d~~~a~~~g~~~a~el~~~------Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q 145 (299)
T PF00933_consen 72 FPSPMALAATWDPELAYEVGRIIARELRAL------GINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQ 145 (299)
T ss_dssp -S-HHHHHHHTCHHHHHHHHHHHHHHHHHT------T-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHHHh------hhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999 9998 999999999999999999999999999999999999999
Q ss_pred cCCCCcceeEEeecccccc-cCCCCCCCcccccccccCHHHHHhhccHHHHHHHHcCCccEEEecccCCCCcccccCHHH
Q 004190 192 GSDGDRLKVAASCKHFTAY-DLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNI 270 (770)
Q Consensus 192 ~~~g~~~~v~a~~KHFpg~-~~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~ai~~g~~~~vM~sy~~vng~pa~~s~~l 270 (770)
+ .| |++|+|||||| ..|+|... ..+.+++++|+|.||+||+.+|+++.+.+||+||+.+|++|+|+|+++
T Consensus 146 ~-~g----v~~~~KHFpG~~~~d~~~~~----~~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~pas~s~~~ 216 (299)
T PF00933_consen 146 G-AG----VAATAKHFPGHGAQDSHRDL----PSVDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTPASLSPKI 216 (299)
T ss_dssp C-TT----SEEEEEEETTGGCSCTTTTT----EEEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEEGGG-HHH
T ss_pred c-cc----cccccccccccccccccccc----ceecCCcccccchhcccchhcccccccceeeeeccccCCccchhhhcc
Confidence 9 78 99999999997 34555433 345679999999999999999944446799999999999999999999
Q ss_pred HHHhhhcccccceEEEcCchhhccccccccccCChHHHHHHHHHcCCCcCCCcch----hHHHHHHHHcCCCCHHHHHHH
Q 004190 271 LKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFL----GLHTESAVQRGLLSEIDINNA 346 (770)
Q Consensus 271 l~~lLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~----~~~l~~av~~G~i~~~~ld~a 346 (770)
|+++||+||||+|+|||||++|+++...+ +..+++++||+||+||+|.+.. .+.|.++|++|.++++|||+|
T Consensus 217 l~~lLR~~lgf~G~viSD~~~m~~~~~~~----~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~ld~a 292 (299)
T PF00933_consen 217 LTDLLRNELGFDGVVISDDLEMGALSSNY----SIEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISEERLDEA 292 (299)
T ss_dssp HCCCCCCCS---SEEEESTTTSHHHHCCT----THHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGHHHHHHH
T ss_pred chhhCcCcccCCCeEecccchHHHHHhcc----ccchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999999999987643 3779999999999999987432 488999999999999999999
Q ss_pred HHHHHHH
Q 004190 347 LVNTLTV 353 (770)
Q Consensus 347 v~RiL~~ 353 (770)
|+|||++
T Consensus 293 v~RIl~~ 299 (299)
T PF00933_consen 293 VRRILRL 299 (299)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=3.2e-48 Score=419.98 Aligned_cols=243 Identities=20% Similarity=0.195 Sum_probs=200.1
Q ss_pred CCchhhhHhhhhccccccCCCcccCCCCCCCccccccccccccCC------HHHHHHHHHHHHHHHHHhhcCCCCcceE-
Q 004190 80 GIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFN------ATLWEAIGRVVSDEARAMYNGGTAGLTY- 152 (770)
Q Consensus 80 gip~~~~~~~~~~g~~~~~~g~~~~~~~~~~t~fP~~~~laat~d------~~l~~~~g~~~g~E~ra~~~~g~~G~~~- 152 (770)
++|.+ +..|.++|.. .+...+.|.||+++++|+||| ++|++++|.++|+|+|++ |+|+
T Consensus 54 ~~pll-i~iD~EgG~v--------~rl~~~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~------Gin~~ 118 (337)
T PRK05337 54 RPPLL-IAVDQEGGRV--------QRFREGFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC------GIDLS 118 (337)
T ss_pred CCCCE-EEEecCCCEe--------eecCCCCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh------CCCcc
Confidence 57776 5666666642 222245799999999999999 999999999999999999 8998
Q ss_pred ecccccccCCCCCCccCCCCCCChHHHHHHHHHHHHHhhcCCCCcceeEEeecccccccCCCCCCCcccccccccCHHHH
Q 004190 153 WSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDI 232 (770)
Q Consensus 153 laP~~dl~r~p~~gr~~e~fgeDP~l~~~~~~a~v~G~Q~~~g~~~~v~a~~KHFpg~~~~~~~~~~r~~~~~~~~~~~l 232 (770)
|+||+||.++++| |+.|+|||||+++++|+.|||+|+|+ .| |++|+|||||||.+..+.+-... ....+.++|
T Consensus 119 ~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~-~g----v~~~~KHFpG~G~~~~dsh~~~~-~~~~~~~el 191 (337)
T PRK05337 119 FAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHA-AG----MAATGKHFPGHGAVEADSHVETP-VDERPLEEI 191 (337)
T ss_pred ccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHH-CC----CEEEecccCCCCCCcCCCCCCCC-CCCCCHHHH
Confidence 9999999965444 67899999999999999999999999 78 99999999999865322221111 123467899
Q ss_pred HhhccHHHHHHHHcCCccEEEec---ccCCCCcccccCHHHHHHhhhcccccceEEEcCchhhccccccccccCChHHHH
Q 004190 233 EDTFDVPFRMCVMEGKVASVMCS---YNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAA 309 (770)
Q Consensus 233 ~e~~l~PF~~ai~~g~~~~vM~s---y~~vng~pa~~s~~ll~~lLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~ 309 (770)
++.||+||+.+|++| +.+|||| |+.+|+.|||+|+++|++|||+||||+|+|||||++|+++. ...+.++++
T Consensus 192 ~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~----~~~~~~~~~ 266 (337)
T PRK05337 192 RAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAA----VAGDYAERA 266 (337)
T ss_pred HhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhh----hcCCHHHHH
Confidence 999999999999998 6799999 88999999999999999999999999999999999998653 234778999
Q ss_pred HHHHHcCCCcCCCcc---hhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 004190 310 ADAIRAGLDLDCGPF---LGLHTESAVQRGLLSEIDINNALVNTLTVQMRL 357 (770)
Q Consensus 310 ~~al~AG~D~~~~~~---~~~~l~~av~~G~i~~~~ld~av~RiL~~k~~~ 357 (770)
++|++||+||+|.+. ....+.+++.+ +++.+|+++++.+.
T Consensus 267 ~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 267 QAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 999999999987643 33556666654 67788998887663
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=1.8e-38 Score=328.93 Aligned_cols=215 Identities=41% Similarity=0.609 Sum_probs=153.0
Q ss_pred eeeeccCCCCCCcccCCcceEEEEccCCCCceeeccccc-ccCCCcCCHHHHHHhhhe---eeeeeccCcccCCchhhHH
Q 004190 394 IVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYA-GIACGYTTPLQGIGRYAR---TIHQQGCKDVACADDQLFG 469 (770)
Q Consensus 394 iVLLKN~~~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~-g~~~~~~t~~~gl~~~~~---~~~~~g~~~~~~~~~~~~~ 469 (770)
||||||++++|||++.+. ||+|+|+.+.....++|++. ..+.+..+++++++++.. +.+..++. ...+...++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc--ccccccchH
Confidence 799999999999998643 99999999998766555554 345667899999999863 22222111 112345678
Q ss_pred HHHHHhhccCEEEEEeCCCccccccc--------cccCCCCCChhHHHHHHHHHhhCCCCEEEEEecCCeeeeccccCCC
Q 004190 470 AAIDASRQADATILVMGLDQSIEAEA--------LDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDP 541 (770)
Q Consensus 470 ~a~~~a~~aD~vIv~vG~~~~~~~Eg--------~Dr~~l~Lp~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~~~~~~~ 541 (770)
++++.++++|++||++|. .++|| .||.++.||..|.+||+++++.+ +|+|||+++++||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~---~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGR---PSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEET---TSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEeccc---cccccccccccccCCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--h
Confidence 889999999999999982 22444 58999999999999999998754 6899999999999997765 4
Q ss_pred CcceEEeccCCCchhHHHHHHHHcCCCCCCcccccccCCccccCCCCccccCCCCCCCCCCCCCcccccCCCcccccCcC
Q 004190 542 RIAAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYPQEYITNLPMTEMAMRPSQSKRYPGRTYRFYKGPVVYPFGHG 621 (770)
Q Consensus 542 ~v~AiL~a~~~G~e~g~AladVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~lypFG~G 621 (770)
+++|||++|++|+++++|++|||||++|||||||+||| ++. +++|..+... ..+++|+|....++||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~p-~~~-~~~p~~~~~~-------~~~~~~~~~~~~~~~~fG~G 222 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTIP-KSM-EDIPAYYNYG-------MYGRTYDYDSGPPLYPFGYG 222 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-BE-SSG-GGTTTTTTTS--------THCCHHHHTTSESB-TT--
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCcceecc-CCh-hhCCCccccc-------ccCcccccCCCCccCcCCCC
Confidence 89999999999999999999999999999999999995 543 5577543211 12345777788999999999
Q ss_pred CCCCC
Q 004190 622 MSYTN 626 (770)
Q Consensus 622 LSYTt 626 (770)
||||+
T Consensus 223 Lsyt~ 227 (227)
T PF01915_consen 223 LSYTY 227 (227)
T ss_dssp B-TT-
T ss_pred CEeeC
Confidence 99996
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.80 E-value=9.2e-20 Score=153.57 Aligned_cols=69 Identities=25% Similarity=0.435 Sum_probs=59.5
Q ss_pred eEEEEEEeCCCC-CCCcccccccccceecCCCCeEEEEEEeccCCCeeEEeCC-CcEEeeCeEEEEEEeCCC
Q 004190 686 HTLLVFSTPPAG-HWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRS-GTRRIPLGEHNIHIGGTK 755 (770)
Q Consensus 686 eVvQlYv~~~~~-~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~-~~~~~~~G~y~~~vG~ss 755 (770)
||||||++++.+ ..+|.|+|+||+||+|+|||+++|+|+|+. ++|++||++ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 899999999988 567999999999999999999999999999 899999999 799999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.05 E-value=0.023 Score=50.33 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=44.1
Q ss_pred ceeEEEEEEEEeCCCCC-cceEEEEEEeCCCCCCCcccccccccce-ecCCCCeEEEEEEeccCCCeeEEeCCCcEEeeC
Q 004190 667 RLTLGVQVDVKNVGSKD-GAHTLLVFSTPPAGHWAPHKQLVAFEKV-HVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPL 744 (770)
Q Consensus 667 ~~~~~v~v~VtNtG~~~-G~eVvQlYv~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~ 744 (770)
+..++++++|+|.|... +.-.|++|+.... .+-..| .|+|||+++++|.+.. . .+
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~---------~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~ 74 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNS---------VSTVTIPSLAPGESETVTFTWTP-P-------------SP 74 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEE---------EEEEEESEB-TTEEEEEEEEEE--S-------------S-
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCce---------eccEEECCcCCCcEEEEEEEEEe-C-------------CC
Confidence 46799999999999974 5668888885532 144555 7999999999999987 3 46
Q ss_pred eEEEEEEe
Q 004190 745 GEHNIHIG 752 (770)
Q Consensus 745 G~y~~~vG 752 (770)
|.|.|.+=
T Consensus 75 G~~~i~~~ 82 (101)
T PF07705_consen 75 GSYTIRVV 82 (101)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEE
Confidence 77776653
No 9
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.31 E-value=0.058 Score=46.07 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=38.4
Q ss_pred ceeEEEEEEEEeCCCCCcceEEEEEEeCCCC-C--CCcccccccccce-ecCCCCeEEEEEEeccCCCeeEEeCCCcEEe
Q 004190 667 RLTLGVQVDVKNVGSKDGAHTLLVFSTPPAG-H--WAPHKQLVAFEKV-HVPAGAQQRVGINIHVCKYLSVVDRSGTRRI 742 (770)
Q Consensus 667 ~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~-~--~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~ 742 (770)
++.++++++|+|.|..+-. -+.+=+..|.+ . ..|. ++ .|+|||+++++|.|....+ .
T Consensus 4 G~~~~~~~tv~N~g~~~~~-~v~~~l~~P~GW~~~~~~~-------~~~~l~pG~s~~~~~~V~vp~~-----------a 64 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLT-NVSLSLSLPEGWTVSASPA-------SVPSLPPGESVTVTFTVTVPAD-----------A 64 (78)
T ss_dssp TEEEEEEEEEE--SSS-BS-S-EEEEE--TTSE---EEE-------EE--B-TTSEEEEEEEEEE-TT------------
T ss_pred CCEEEEEEEEEECCCCcee-eEEEEEeCCCCccccCCcc-------ccccCCCCCEEEEEEEEECCCC-----------C
Confidence 3679999999999976533 24444455654 2 1232 22 7999999999999998442 3
Q ss_pred eCeEEEEEE
Q 004190 743 PLGEHNIHI 751 (770)
Q Consensus 743 ~~G~y~~~v 751 (770)
++|+|.|.+
T Consensus 65 ~~G~y~v~~ 73 (78)
T PF10633_consen 65 APGTYTVTV 73 (78)
T ss_dssp -SEEEEEEE
T ss_pred CCceEEEEE
Confidence 589998765
No 10
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=93.30 E-value=0.54 Score=40.69 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=34.6
Q ss_pred EEEEEEEEeCCCCC------cceEEEEEEeCCCCC--CC---cccccccccceecCCCCeEEEEEEeccCCCeeEEeCCC
Q 004190 670 LGVQVDVKNVGSKD------GAHTLLVFSTPPAGH--WA---PHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSG 738 (770)
Q Consensus 670 ~~v~v~VtNtG~~~------G~eVvQlYv~~~~~~--~~---P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~ 738 (770)
+.++++|+|+++.+ .-.-.-+.|.++.+. -+ -..=...+..+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~-~~~~------ 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDL-KDLS------ 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS-----------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECC-CCCC------
Confidence 56778888887732 122234445544431 00 111144556778999999999999998 5444
Q ss_pred cEEeeCeEEEEE
Q 004190 739 TRRIPLGEHNIH 750 (770)
Q Consensus 739 ~~~~~~G~y~~~ 750 (770)
||+|++-
T Consensus 75 -----~G~Y~~~ 81 (82)
T PF12690_consen 75 -----PGEYTLE 81 (82)
T ss_dssp -----SEEEEEE
T ss_pred -----CceEEEe
Confidence 8999874
No 11
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=88.57 E-value=3.6 Score=36.63 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=43.8
Q ss_pred eeEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcccccccccceecCCCCeEEEEEEeccCCCeeEEeCCCcEEeeCeEE
Q 004190 668 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGEH 747 (770)
Q Consensus 668 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y 747 (770)
...+.+++++|+|....+-- ++.+....... -.-+..-.|+||++.++.+++...+....++..-.-..|.|.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~----v~~~~~~~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~~~ 93 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFR----VRQPESLSSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGGSF 93 (102)
T ss_pred CEEEEEEEEEECCCCCEEEE----EEeCCcCCCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCeEE
Confidence 46789999999999875432 33333111111 1123345699999999999999425455554332223344444
Q ss_pred E
Q 004190 748 N 748 (770)
Q Consensus 748 ~ 748 (770)
.
T Consensus 94 ~ 94 (102)
T PF14874_consen 94 E 94 (102)
T ss_pred E
Confidence 4
No 12
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=88.56 E-value=10 Score=43.04 Aligned_cols=96 Identities=20% Similarity=0.186 Sum_probs=55.8
Q ss_pred HHHcCCccEEEecccCCCC-----cccccCHHHHHHhhhcccccceEEEcCchhhccccccccccCChHHHHHHHHHcC-
Q 004190 243 CVMEGKVASVMCSYNQVNG-----VPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAG- 316 (770)
Q Consensus 243 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG- 316 (770)
.|+++.+ .+|.+.+++.| ..|+-++.+++.+|+.=+.. |.-+.--+ |=..+|+..|
T Consensus 60 ~iDe~lv-l~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~AepG----------------EFs~RAFLNgK 121 (454)
T COG0486 60 IIDEVLV-LYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAEPG----------------EFSKRAFLNGK 121 (454)
T ss_pred EeeeeeE-EEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecCCC----------------cchHHHHhcCC
Confidence 4566755 99999999987 46888888888887744332 22222222 2234455444
Q ss_pred CCcCCC--------cchhHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q 004190 317 LDLDCG--------PFLGLHTESAVQ--RGLLSEIDINNALVNTLTVQMRL 357 (770)
Q Consensus 317 ~D~~~~--------~~~~~~l~~av~--~G~i~~~~ld~av~RiL~~k~~~ 357 (770)
+|+.-- .........|++ +|.+ ..++++-.++++.+...+
T Consensus 122 ~DLtqAEai~dLI~A~te~a~r~A~~~l~G~l-s~~i~~lr~~li~~~a~v 171 (454)
T COG0486 122 LDLTQAEAIADLIDAKTEQAARIALRQLQGAL-SQLINELREALLELLAQV 171 (454)
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHh
Confidence 555311 011123344444 3666 467778888888877665
No 13
>COG1470 Predicted membrane protein [Function unknown]
Probab=81.24 E-value=6 Score=44.66 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=47.1
Q ss_pred eeEEEEEEEEeCCCCCcceEEEEEEe-CCCC-CCC-cccccccccceecCCCCeEEEEEEeccCCCeeEEeCCCcEEeeC
Q 004190 668 LTLGVQVDVKNVGSKDGAHTLLVFST-PPAG-HWA-PHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPL 744 (770)
Q Consensus 668 ~~~~v~v~VtNtG~~~G~eVvQlYv~-~~~~-~~~-P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~ 744 (770)
.++..+|++.|-|.-+-+ .-|=+. .|.. ..+ -.-+ -.-.|+.|.|||+++|++++.++. -.+|
T Consensus 284 ~t~sf~V~IeN~g~~~d~--y~Le~~g~pe~w~~~Fteg~-~~vt~vkL~~gE~kdvtleV~ps~-----------na~p 349 (513)
T COG1470 284 TTASFTVSIENRGKQDDE--YALELSGLPEGWTAEFTEGE-LRVTSVKLKPGEEKDVTLEVYPSL-----------NATP 349 (513)
T ss_pred CceEEEEEEccCCCCCce--eEEEeccCCCCcceEEeeCc-eEEEEEEecCCCceEEEEEEecCC-----------CCCC
Confidence 467899999999864432 222222 3332 100 0000 112577899999999999999843 2468
Q ss_pred eEEEEEEeCCCC
Q 004190 745 GEHNIHIGGTKH 756 (770)
Q Consensus 745 G~y~~~vG~ss~ 756 (770)
|+|.+.|-.+++
T Consensus 350 G~Ynv~I~A~s~ 361 (513)
T COG1470 350 GTYNVTITASSS 361 (513)
T ss_pred CceeEEEEEecc
Confidence 999988875543
No 14
>COG1470 Predicted membrane protein [Function unknown]
Probab=78.79 E-value=8.8 Score=43.34 Aligned_cols=81 Identities=14% Similarity=0.246 Sum_probs=55.7
Q ss_pred eeEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcccccccccce-ecCCCCeEEEEEEeccCCCeeEEeCCCcEEeeCeE
Q 004190 668 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKV-HVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGE 746 (770)
Q Consensus 668 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 746 (770)
...++.+.|.|+|+.+=.. +-|=|..|..= ..+.-.| ++ .|+|||+++|.++|+.-++ ..+|+
T Consensus 397 ee~~i~i~I~NsGna~Ltd-Ikl~v~~PqgW---ei~Vd~~-~I~sL~pge~~tV~ltI~vP~~-----------a~aGd 460 (513)
T COG1470 397 EEKTIRISIENSGNAPLTD-IKLTVNGPQGW---EIEVDES-TIPSLEPGESKTVSLTITVPED-----------AGAGD 460 (513)
T ss_pred ccceEEEEEEecCCCccce-eeEEecCCccc---eEEECcc-cccccCCCCcceEEEEEEcCCC-----------CCCCc
Confidence 4578899999999766555 45666666651 1122333 45 5899999999999987432 25899
Q ss_pred EEEEEeC------CCCeEEEEEEe
Q 004190 747 HNIHIGG------TKHSVSLHAAT 764 (770)
Q Consensus 747 y~~~vG~------ss~~~~~~~~~ 764 (770)
|.+.+-. ++.++++.|++
T Consensus 461 Y~i~i~~ksDq~s~e~tlrV~V~~ 484 (513)
T COG1470 461 YRITITAKSDQASSEDTLRVVVGQ 484 (513)
T ss_pred EEEEEEEeeccccccceEEEEEec
Confidence 9998873 34557777765
No 15
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=76.12 E-value=8.6 Score=34.51 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=28.0
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcccccccccceecCCCCeEEEEEEeccCCCeeEEeCCCcEEeeCeEEEEE
Q 004190 671 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGEHNIH 750 (770)
Q Consensus 671 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~~~ 750 (770)
.|+++++|.|+.. .+ +.+.. ......|.||++++++|+-. ++|+|+++
T Consensus 44 ~v~l~~~N~~~~~-h~---~~i~~------------~~~~~~l~~g~~~~~~f~~~----------------~~G~y~~~ 91 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HE---FVIPD------------LGISKVLPPGETATVTFTPL----------------KPGEYEFY 91 (104)
T ss_dssp EEEEEEEE-SSS--EE---EEEGG------------GTEEEEE-TT-EEEEEEEE-----------------S-EEEEEB
T ss_pred eEEEEEEECCCCc-EE---EEECC------------CceEEEECCCCEEEEEEcCC----------------CCEEEEEE
Confidence 4668889998874 22 22211 12236799999999888533 37888887
Q ss_pred EeC
Q 004190 751 IGG 753 (770)
Q Consensus 751 vG~ 753 (770)
-+-
T Consensus 92 C~~ 94 (104)
T PF13473_consen 92 CTM 94 (104)
T ss_dssp -SS
T ss_pred cCC
Confidence 663
No 16
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=73.81 E-value=7.8 Score=34.62 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=30.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCC-----cccccccc-------cceecCCCCeEEEEEE
Q 004190 670 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWA-----PHKQLVAF-------EKVHVPAGAQQRVGIN 724 (770)
Q Consensus 670 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~-----P~k~L~gF-------~kv~L~pGes~~V~~~ 724 (770)
=+++++|+|||+|+ +|+=-+..--... ....=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 46899999999987 6663332211000 11111122 3467799999999874
No 17
>PRK13203 ureB urease subunit beta; Reviewed
Probab=73.79 E-value=7.5 Score=34.75 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=30.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----ccccccc-------cceecCCCCeEEEEEE
Q 004190 670 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 724 (770)
Q Consensus 670 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 724 (770)
=+++++|+|||+|+ ||+=-+..--...| ...=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999987 66643322110001 1111111 3466799999999874
No 18
>PRK13202 ureB urease subunit beta; Reviewed
Probab=73.40 E-value=8 Score=34.67 Aligned_cols=51 Identities=20% Similarity=0.151 Sum_probs=30.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----cccccc-------ccceecCCCCeEEEEEE
Q 004190 670 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVA-------FEKVHVPAGAQQRVGIN 724 (770)
Q Consensus 670 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~g-------F~kv~L~pGes~~V~~~ 724 (770)
-+++++|+|||+|+ +|+=-+..--...| ...=.| =.-|..+|||+++|++.
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 46899999999987 66633322110001 111111 13467799999999874
No 19
>PRK13201 ureB urease subunit beta; Reviewed
Probab=72.73 E-value=7.1 Score=36.50 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=30.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----ccccccc-------cceecCCCCeEEEEEE
Q 004190 669 TLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 724 (770)
Q Consensus 669 ~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 724 (770)
.-+++++|+|||+|+ ||+=-+..--...| ...=.|| .-|..+|||+++|++.
T Consensus 19 r~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 19 HPETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CCEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 346899999999987 66633322110001 1111121 3467799999999984
No 20
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=71.29 E-value=8.5 Score=34.32 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=26.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----ccccccc-------cceecCCCCeEEEEEE
Q 004190 669 TLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 724 (770)
Q Consensus 669 ~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 724 (770)
.-+++++|+|||+|+ +|+=-+..--...| ...=.|+ .-|..+|||+++|++.
T Consensus 18 r~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 457899999999987 67643322111111 1111121 3467799999999874
No 21
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=71.21 E-value=9.7 Score=34.02 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=30.0
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----ccccccc-------cceecCCCCeEEEEEE
Q 004190 670 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 724 (770)
Q Consensus 670 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 724 (770)
=+++++|+|||+|+ +|+=-+..--...| ...=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999987 66633321110001 1111111 3467799999999874
No 22
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=70.14 E-value=12 Score=34.54 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=37.1
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCC--CCCcccccccccce-ecCCCCeEEEEEEecc
Q 004190 671 GVQVDVKNVGSKDGAHTLLVFSTPPAG--HWAPHKQLVAFEKV-HVPAGAQQRVGINIHV 727 (770)
Q Consensus 671 ~v~v~VtNtG~~~G~eVvQlYv~~~~~--~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~ 727 (770)
..+++|+|+|+ -.-.+|+.+..... ...+...|.=+=.. .|+||+++.|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57899999998 56678999886211 12233334444444 589999999999 554
No 23
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=68.32 E-value=29 Score=30.26 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=30.8
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC-CCcccccccccceecCCCCeEEEEEEecc
Q 004190 671 GVQVDVKNVGSKDGAHTLLVFSTPPAGH-WAPHKQLVAFEKVHVPAGAQQRVGINIHV 727 (770)
Q Consensus 671 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~-~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 727 (770)
.+.++++|.|+. -+.+-|.+..-. ..| .++.|+||++.++.+.+..
T Consensus 21 ~l~l~l~N~g~~----~~~~~v~~~~y~~~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPGSA----AVTFTVYDNAYGGGGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCCCC----cEEEEEEeCCcCCCCC-------EEEEECCCCEEEEEEeecC
Confidence 688999998643 344444442211 224 5678999999999998854
No 24
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=66.32 E-value=17 Score=34.96 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=42.5
Q ss_pred eeEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCccccccccccee-cCCCCeEEEEEEecc
Q 004190 668 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKVH-VPAGAQQRVGINIHV 727 (770)
Q Consensus 668 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~-L~pGes~~V~~~l~~ 727 (770)
.-+.|.++.+|+++. ++--+-+..+. ...-.++++|.++. |+||++.++.+-|+-
T Consensus 85 ~mvsIql~ftN~s~~---~i~~I~i~~k~--l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDE---PIKNIHIGEKK--LPAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred CcEEEEEEEEecCCC---eecceEECCCC--CCCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 358899999999974 55556665543 12345799999995 999999999999886
No 25
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=64.57 E-value=54 Score=29.72 Aligned_cols=60 Identities=25% Similarity=0.308 Sum_probs=31.2
Q ss_pred eEEEEEEEEeCCCCCcceEEEEE-----EeCC-CC--CCCc-c----cccccccceecCCCCeEEEEEEeccC
Q 004190 669 TLGVQVDVKNVGSKDGAHTLLVF-----STPP-AG--HWAP-H----KQLVAFEKVHVPAGAQQRVGINIHVC 728 (770)
Q Consensus 669 ~~~v~v~VtNtG~~~G~eVvQlY-----v~~~-~~--~~~P-~----k~L~gF~kv~L~pGes~~V~~~l~~~ 728 (770)
..+.+++++|.|+.+=.--+... ..+. .. ...+ . .....=.++.|+||++++|+++|+..
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 47899999999996654333333 1111 11 1111 1 12222345679999999999999983
No 26
>PRK13205 ureB urease subunit beta; Reviewed
Probab=62.28 E-value=16 Score=34.93 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=30.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----ccccccc-------cceecCCCCeEEEEEE
Q 004190 670 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 724 (770)
Q Consensus 670 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 724 (770)
=+++++|+|||+|+ ||+=-+...-...| ...=.|| .-|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999987 66633322110011 1111122 3467799999999985
No 27
>PRK13204 ureB urease subunit beta; Reviewed
Probab=62.02 E-value=16 Score=35.01 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=30.3
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----ccccccc-------cceecCCCCeEEEEEE
Q 004190 670 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 724 (770)
Q Consensus 670 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 724 (770)
=.++++|+|||+|. ||+=-+...-...| ...=.|+ .-|..+|||+++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46899999999987 66633322110001 1111121 3467799999999884
No 28
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=61.48 E-value=15 Score=37.76 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=29.7
Q ss_pred EEEeCCCCCcceEEEEEEeCCCCC---CCc--------ccccccccceecCCCCeEEEEEEeccCCCeeEEeC
Q 004190 675 DVKNVGSKDGAHTLLVFSTPPAGH---WAP--------HKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDR 736 (770)
Q Consensus 675 ~VtNtG~~~G~eVvQlYv~~~~~~---~~P--------~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 736 (770)
.+-|-|. |.-+++||-+.+... ..| .+.+....++.|.||||-+ |.+.-.-+||-+
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiT----L~Pg~yH~Fw~e 177 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESIT----LPPGIYHWFWGE 177 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEE----E-TTEEEEEEE-
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEe----eCCCCeeeEEec
Confidence 3456654 788899999886541 122 4568889999999999855 666333355543
No 29
>PRK13198 ureB urease subunit beta; Reviewed
Probab=58.59 E-value=20 Score=34.36 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=30.3
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCC-----cccccccc-------cceecCCCCeEEEEEE
Q 004190 670 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWA-----PHKQLVAF-------EKVHVPAGAQQRVGIN 724 (770)
Q Consensus 670 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~-----P~k~L~gF-------~kv~L~pGes~~V~~~ 724 (770)
=+++++|+|||+|+ ||+=-+...-... ....=.|+ .-|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 46899999999987 6663332211000 11111122 3467799999999884
No 30
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=58.15 E-value=22 Score=34.16 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=37.7
Q ss_pred ceeEEEEEEEEeCCCCCcceE-E--EEEEeC-CCC--CCCcccccccccce------ecCCCCeEEEEEEecc
Q 004190 667 RLTLGVQVDVKNVGSKDGAHT-L--LVFSTP-PAG--HWAPHKQLVAFEKV------HVPAGAQQRVGINIHV 727 (770)
Q Consensus 667 ~~~~~v~v~VtNtG~~~G~eV-v--QlYv~~-~~~--~~~P~k~L~gF~kv------~L~pGes~~V~~~l~~ 727 (770)
++.+.|..+|||+|+++=++| + .++=.. ... ...=..++.+|.+. .|+|||++.-++.++.
T Consensus 61 ~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 61 SESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred ccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 367999999999999866553 2 222211 111 11223345556322 2999999999998874
No 31
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=57.72 E-value=35 Score=31.82 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=36.6
Q ss_pred eeEEEEEEEEeCCCCCcceEEEEEEeCCCC-------------C-----CCcccccccccc-eecCCCCeEEEEEEecc
Q 004190 668 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAG-------------H-----WAPHKQLVAFEK-VHVPAGAQQRVGINIHV 727 (770)
Q Consensus 668 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~-------------~-----~~P~k~L~gF~k-v~L~pGes~~V~~~l~~ 727 (770)
...+++++|+|+++-.- .+++++..-.+ . .-+..+|....+ |.|+|+|+++|+|+|..
T Consensus 27 q~~~l~v~i~N~s~~~~--tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEI--TVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKM 103 (121)
T ss_pred CEEEEEEEEEeCCCCCE--EEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEc
Confidence 46778888888877443 34444433111 0 013344444444 68999999999999987
No 32
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=57.56 E-value=21 Score=39.25 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=30.2
Q ss_pred ceeEEEEEEEEeCCCCCcceEEEE--E-------EeCCCCC--CCccccccccc------ceecCCCCeEEEEEEec
Q 004190 667 RLTLGVQVDVKNVGSKDGAHTLLV--F-------STPPAGH--WAPHKQLVAFE------KVHVPAGAQQRVGINIH 726 (770)
Q Consensus 667 ~~~~~v~v~VtNtG~~~G~eVvQl--Y-------v~~~~~~--~~P~k~L~gF~------kv~L~pGes~~V~~~l~ 726 (770)
+.+++++++|||+|+-+ |+| | +.+.... ..-..+|.+-+ .--++|||++++++++.
T Consensus 262 gR~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 262 GRTLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp SSEEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred CcEEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 46899999999998743 443 1 1111111 11123555442 22489999999999874
No 33
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=54.97 E-value=9.6 Score=41.82 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=35.2
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCCh--hHHHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPG--RQQELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~--~q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||+||++.|... .+|.+|.++--.. --.++++++.+.+++..|+++ .+||+|+.
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiiv-vsNPvDv~ 135 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLV-VGNPANTN 135 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEE-eCCcHHHH
Confidence 56789999999998643 4666775432111 123455566665542444444 46899773
No 34
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=54.83 E-value=29 Score=31.20 Aligned_cols=60 Identities=13% Similarity=0.022 Sum_probs=35.2
Q ss_pred eeEEEEEEEEeCCCCCcceEEEEEEeC--CCCCCCcc-cccccccceecCCCCeEEEEEEeccC
Q 004190 668 LTLGVQVDVKNVGSKDGAHTLLVFSTP--PAGHWAPH-KQLVAFEKVHVPAGAQQRVGINIHVC 728 (770)
Q Consensus 668 ~~~~v~v~VtNtG~~~G~eVvQlYv~~--~~~~~~P~-k~L~gF~kv~L~pGes~~V~~~l~~~ 728 (770)
..++|+++++|..+..-+. |++++.. -.....+. ...+-...+.|+|||++++++.|.+.
T Consensus 15 ~d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp SEEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 5699999999999887444 2333321 11111222 22344455689999999999999883
No 35
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=50.38 E-value=28 Score=35.10 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=30.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----ccccccc-------cceecCCCCeEEEEEE
Q 004190 670 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 724 (770)
Q Consensus 670 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 724 (770)
=+++++|+|||+|+ +|+=-+...-...| .+.=.|| .-|..+|||+++|++.
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46899999999987 56633322110111 1111122 3466799999999874
No 36
>COG1160 Predicted GTPases [General function prediction only]
Probab=49.94 E-value=36 Score=38.68 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=31.4
Q ss_pred HHHHHHhhccCEEEEEeCCCccccccccccCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 004190 469 GAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLM 527 (770)
Q Consensus 469 ~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~li~~v~~~~~~pvIvVl~ 527 (770)
+++..++++||++|+++.. .+| +.....++.+-+. ..+||+|+|+|
T Consensus 75 ~Qa~~Ai~eADvilfvVD~-----~~G-------it~~D~~ia~~Lr-~~~kpviLvvN 120 (444)
T COG1160 75 EQALIAIEEADVILFVVDG-----REG-------ITPADEEIAKILR-RSKKPVILVVN 120 (444)
T ss_pred HHHHHHHHhCCEEEEEEeC-----CCC-------CCHHHHHHHHHHH-hcCCCEEEEEE
Confidence 4566788999999999853 222 3444445555555 46789999987
No 37
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=49.85 E-value=5.7 Score=37.96 Aligned_cols=55 Identities=24% Similarity=0.474 Sum_probs=31.6
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChhHH----HHHHHHHhhCCCCEEEEEecCCeeee
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQ----ELVSKVSMASKGPTILVLMSGGPIDV 534 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~----~li~~v~~~~~~pvIvVl~~g~P~~l 534 (770)
+..++||++|++.|... .+|.+|.++- .... ++.+++.+.+++.+++| ..+|+++
T Consensus 65 ~~~~~aDivvitag~~~---~~g~sR~~ll--~~N~~i~~~~~~~i~~~~p~~~viv--vtNPvd~ 123 (141)
T PF00056_consen 65 EALKDADIVVITAGVPR---KPGMSRLDLL--EANAKIVKEIAKKIAKYAPDAIVIV--VTNPVDV 123 (141)
T ss_dssp GGGTTESEEEETTSTSS---STTSSHHHHH--HHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHH
T ss_pred cccccccEEEEeccccc---cccccHHHHH--HHhHhHHHHHHHHHHHhCCccEEEE--eCCcHHH
Confidence 46789999998887543 4555654331 2222 33445555555554433 3679876
No 38
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=49.18 E-value=14 Score=40.25 Aligned_cols=58 Identities=17% Similarity=0.369 Sum_probs=35.6
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCC--hhHHHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLP--GRQQELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp--~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..+.||+||++.|... .+|.+|.+|--. .--.++.+++.+.+++ .++ +..+||+|+.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d-~iv-lVvtNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAPD-AIV-LVVTNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCCC-eEE-EEecCcHHHH
Confidence 46789999999998654 667777654211 1124455666665554 333 3346899874
No 39
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=47.76 E-value=11 Score=41.30 Aligned_cols=59 Identities=24% Similarity=0.257 Sum_probs=33.2
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCCh--hHHHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPG--RQQELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~--~q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||+||++.|... .+|.+|.++--.. --.++++++.+..++..+ |++.+||+|+.
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~i-vivvtNPvDv~ 116 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADLLTKNTPIFKATGEALSEYAKPTVK-VLVIGNPVNTN 116 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeE-EEEeCCchHHH
Confidence 46789999999988643 4566665431100 013344555554333243 34446899773
No 40
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=46.98 E-value=50 Score=34.38 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=32.1
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC------CCcccccccccceecCCCCeEEEEEEe
Q 004190 671 GVQVDVKNVGSKDGAHTLLVFSTPPAGH------WAPHKQLVAFEKVHVPAGAQQRVGINI 725 (770)
Q Consensus 671 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~------~~P~k~L~gF~kv~L~pGes~~V~~~l 725 (770)
.++++|+|+|+. .-.+|.-+.+.... ..|. -..|+||+++.|++-.
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~fivtPP-------l~rl~pg~~q~vRii~ 92 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPEDKSKLLLVTPP-------VARVEPGQSQQVRFIL 92 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCCCCCCEEEcCC-------eEEECCCCceEEEEEE
Confidence 467888999975 47888888654321 1232 1468999999999854
No 41
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=46.78 E-value=63 Score=30.26 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=38.9
Q ss_pred eEEEEEEEEeCCCC----CcceEEEEEEeCCCCC-CCcccccccccceecCCCCeEEEEEEecc
Q 004190 669 TLGVQVDVKNVGSK----DGAHTLLVFSTPPAGH-WAPHKQLVAFEKVHVPAGAQQRVGINIHV 727 (770)
Q Consensus 669 ~~~v~v~VtNtG~~----~G~eVvQlYv~~~~~~-~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 727 (770)
.-.+.+++||+|+. .|.=-|++.-..-... ....++-..=+.|.|+||++....|.+..
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 44889999999996 5665666662221111 11222333556789999999999888875
No 42
>PRK13986 urease subunit alpha; Provisional
Probab=44.76 E-value=39 Score=34.57 Aligned_cols=51 Identities=24% Similarity=0.187 Sum_probs=30.0
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----ccccccc-------cceecCCCCeEEEEEE
Q 004190 670 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 724 (770)
Q Consensus 670 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 724 (770)
=+++++|+|||+|+ +|+=-+...-...| ...=.|| .-|..+|||+++|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46899999999987 66633322110001 1111111 3467799999999874
No 43
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=42.09 E-value=2e+02 Score=30.95 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCCCCcceeEEeecccccc
Q 004190 179 SGKYAASYVRGLQGSDGDRLKVAASCKHFTAY 210 (770)
Q Consensus 179 ~~~~~~a~v~G~Q~~~g~~~~v~a~~KHFpg~ 210 (770)
++.++..||+-+++ .+...+|.+|=|.+||.
T Consensus 106 IAT~T~~~V~~~~~-~~~~~~I~~TRKT~Pg~ 136 (284)
T PRK06096 106 VSDYLAQMLALLRE-RYPDGNIACTRKAIPGT 136 (284)
T ss_pred HHHHHHHHHHHHHh-hCCCcEEEecCcCCCch
Confidence 57888899998876 34446799999999984
No 44
>PLN00135 malate dehydrogenase
Probab=39.71 E-value=23 Score=38.62 Aligned_cols=58 Identities=12% Similarity=0.287 Sum_probs=33.5
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCCh--hHHHHHHHHHhh-CCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPG--RQQELVSKVSMA-SKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~--~q~~li~~v~~~-~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||+||++.|... .+|.+|.++--.. --.++++++.+. +++ .+++ +.+||+|+.
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~-aivi-vvsNPvDv~ 114 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKSQASALEKHAAPD-CKVL-VVANPANTN 114 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEE-EeCCcHHHH
Confidence 56789999999998643 3555665431111 123445566652 333 4443 346899773
No 45
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=39.42 E-value=23 Score=38.86 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=33.4
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||+||++.|... .+|.+|.++ -..- .++..++.+.+++..| +++.+||+|+.
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~i-iivvsNPvD~~ 134 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVK-VLVVGNPCNTN 134 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeE-EEEecCcHHHH
Confidence 56789999999988643 356666543 1222 2344455554422344 34446899773
No 46
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=38.82 E-value=70 Score=24.45 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC
Q 004190 329 TESAVQRGLLSEIDINNALVNTLTVQMRLGM 359 (770)
Q Consensus 329 l~~av~~G~i~~~~ld~av~RiL~~k~~~Gl 359 (770)
.+..++...-+.+.|+..|..+|.+|..+|=
T Consensus 13 ~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg~ 43 (45)
T cd00938 13 LVRKLKAEKASKEQIAEEVAKLLELKAQLGG 43 (45)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhCC
Confidence 4455666788899999999999999999873
No 47
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=38.21 E-value=18 Score=33.04 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=31.5
Q ss_pred ccccCcCCCCCCceecccccCccccccCCCCCCcccccccccccccccccCCceeEEEEEEEEeCCCCCcceEEEEEE
Q 004190 615 VYPFGHGMSYTNFVHTVANAPTVVAVPLDGRHGSINATISGKAIKVTHAKCNRLTLGVQVDVKNVGSKDGAHTLLVFS 692 (770)
Q Consensus 615 lypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~eVvQlYv 692 (770)
.|-.-||+.||+|+...-.+.....+-++. ++..=-..++|+|+|++.=.=-+=-|+
T Consensus 31 ~y~~~~g~g~~~f~~~~~gi~~~~~v~V~~---------------------~~~vEi~~l~l~N~~~~~r~L~vtsy~ 87 (110)
T PF06165_consen 31 EYEVRHGFGYTRFEREDGGIETELTVFVPP---------------------DDPVEIRRLRLTNTSNRPRRLSVTSYA 87 (110)
T ss_dssp EEEEEEESSEEEEEEEETTEEEEEEEE--T---------------------TSSEEEEEEEEEE-SSS-EEEEEEEEE
T ss_pred cEEEEECCCeEEEEEEeCCEEEEEEEEEcC---------------------CCCEEEEEEEEEECcCCcEEEEEEEEE
Confidence 588999999999998754432221121110 111223589999999876543333343
No 48
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=38.11 E-value=1.6e+02 Score=33.68 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=33.5
Q ss_pred hhHHHHHHHhhc--cCEEEEEeCCCccccccccccCCCCCChhHHHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 466 QLFGAAIDASRQ--ADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 466 ~~~~~a~~~a~~--aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
..+.++.+.+.. .|++|++=|. +...+|. +-++.++++++++ ++.|||.- .|-=.|.+
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGG--------GS~eDL~-~Fn~e~v~~ai~~-~~~Pvis~--IGHE~D~t 238 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGG--------GSLEDLW-AFNDEAVARAIAA-SRIPVISA--VGHETDFT 238 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCC--------CCHHHhh-ccCcHHHHHHHHc-CCCCEEEe--ccCCCCcc
Confidence 345555555544 5988776552 2233442 3457788899985 78897543 35444443
No 49
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=37.63 E-value=32 Score=37.55 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=33.1
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChhH---HHHHHHHHhhCCCCEEEEEecCCeeee
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ---QELVSKVSMASKGPTILVLMSGGPIDV 534 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q---~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (770)
+..++||+||++.|... .+|.+|.++ |+.+- .+..+++.+.+++ .+ +++..||+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl-l~~N~~I~~~i~~~i~~~~p~-~i-iivvsNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL-FNVNAGIVKDLVAAVAESCPK-AM-ILVITNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH-HHHhHHHHHHHHHHHHHhCCC-eE-EEEecCchhh
Confidence 47889999999998643 456666543 12111 2334455554444 33 4445789984
No 50
>PRK05442 malate dehydrogenase; Provisional
Probab=37.47 E-value=21 Score=39.23 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=32.8
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||+||++.|... .+|.+|.++- ..- .++.+++.+..+...++ ++.+||+|+.
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dll--~~Na~i~~~i~~~i~~~~~~~~ii-ivvsNPvDv~ 136 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDLL--EANGAIFTAQGKALNEVAARDVKV-LVVGNPANTN 136 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHHhCCCCeEE-EEeCCchHHH
Confidence 56789999999888543 4566665432 222 23444555433223343 3446899874
No 51
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=37.38 E-value=86 Score=25.35 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=25.6
Q ss_pred hhccCEEEEEeCCCccccccccccCCCCCChhHHHHHHHHHhhC-CCCEEEEEe
Q 004190 475 SRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMAS-KGPTILVLM 527 (770)
Q Consensus 475 a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~li~~v~~~~-~~pvIvVl~ 527 (770)
+--.+++++++..+. .=|. -..+|..|.+++.... ++|+|+|++
T Consensus 11 ~hL~~~ilfi~D~Se---~CGy------sie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 11 AHLADAILFIIDPSE---QCGY------SIEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp GGT-SEEEEEE-TT----TTSS-------HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HhhcceEEEEEcCCC---CCCC------CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 334677777764211 1121 1367999999998776 689888875
No 52
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=37.01 E-value=2e+02 Score=28.85 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=48.9
Q ss_pred ceeEEEEEEEEeCCCCCcceEEEEEE-eCCCCCCCcccccccc--cc-eecCCCCeEEEEEEeccCCCeeEEeCCCc---
Q 004190 667 RLTLGVQVDVKNVGSKDGAHTLLVFS-TPPAGHWAPHKQLVAF--EK-VHVPAGAQQRVGINIHVCKYLSVVDRSGT--- 739 (770)
Q Consensus 667 ~~~~~v~v~VtNtG~~~G~eVvQlYv-~~~~~~~~P~k~L~gF--~k-v~L~pGes~~V~~~l~~~~~ls~~d~~~~--- 739 (770)
+..++|+++|.|.|+-+..+| +|.= +.|... -.-..|- .+ -.|+||++.+-++.+.+ +...+++-...
T Consensus 37 g~~v~V~~~iyN~G~~~A~dV-~l~D~~fp~~~---F~lvsG~~s~~~~~i~pg~~vsh~~vv~p-~~~G~f~~~~a~Vt 111 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSSAAYDV-KLTDDSFPPED---FELVSGSLSASWERIPPGENVSHSYVVRP-KKSGYFNFTPAVVT 111 (181)
T ss_pred CcEEEEEEEEEECCCCeEEEE-EEECCCCCccc---cEeccCceEEEEEEECCCCeEEEEEEEee-eeeEEEEccCEEEE
Confidence 467999999999998766654 3332 222210 0111221 11 25899999999999998 55666665432
Q ss_pred EEeeCeEEEEEEeCCC
Q 004190 740 RRIPLGEHNIHIGGTK 755 (770)
Q Consensus 740 ~~~~~G~y~~~vG~ss 755 (770)
+..+.|.=...++.|+
T Consensus 112 Y~~~~~~~~~~~a~Ss 127 (181)
T PF05753_consen 112 YRDSEGAKELQVAYSS 127 (181)
T ss_pred EECCCCCceeEEEEec
Confidence 3334443344444443
No 53
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=36.98 E-value=17 Score=27.88 Aligned_cols=17 Identities=47% Similarity=0.686 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHhhcc
Q 004190 3 STIAFFFLGLILLSASS 19 (770)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (770)
||+|+||+|.+.+|.|=
T Consensus 6 sllLlfflG~ISlSlCe 22 (46)
T PF03032_consen 6 SLLLLFFLGTISLSLCE 22 (46)
T ss_pred HHHHHHHHHHcccchHH
Confidence 78999999999887764
No 54
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=36.18 E-value=22 Score=38.47 Aligned_cols=58 Identities=16% Similarity=0.322 Sum_probs=34.2
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCCh--hHHHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPG--RQQELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~--~q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||++|++.|... .+|.+|.++..-. --.++.+++.+.+++ .+ |++.++|.++-
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~-~~-viv~sNP~d~~ 121 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYGPD-AI-ILVVSNPVDIL 121 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eE-EEEccChHHHH
Confidence 47789999999998643 4566665432211 123445555554433 33 45557898763
No 55
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=35.27 E-value=2.4e+02 Score=23.98 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=44.5
Q ss_pred eEEEEEEEEeC-CC-CCcceEEEEEEeCCCCCCCcccccccccceecCCCCeEEEEEEeccCCCeeEEeCCCcEEeeCeE
Q 004190 669 TLGVQVDVKNV-GS-KDGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGE 746 (770)
Q Consensus 669 ~~~v~v~VtNt-G~-~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 746 (770)
.+.+++.+-|. .. ..| .-+++|++-... +. .+.....-.|.|||+..|+|.+.. +.+ +.+..|.+++..|
T Consensus 5 ~f~A~i~il~~~~~i~~G-y~~~l~~~t~~~---~~-~i~~i~~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g- 76 (87)
T cd03708 5 EFEAEILVLHHPTTISPG-YQATVHIGSIRQ---TA-RIVSIDKDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG- 76 (87)
T ss_pred EEEEEEEEEcCCCcccCC-CEeEEEEcCCEE---EE-EEEeccHhhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-
Confidence 46677777763 33 344 446677765431 11 111111256899999999999643 346 4455567777777
Q ss_pred EEEEEe
Q 004190 747 HNIHIG 752 (770)
Q Consensus 747 y~~~vG 752 (770)
.++-+|
T Consensus 77 ~tva~G 82 (87)
T cd03708 77 RTKGVG 82 (87)
T ss_pred CcEEEE
Confidence 466555
No 56
>PRK05086 malate dehydrogenase; Provisional
Probab=34.81 E-value=30 Score=37.81 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=32.9
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCCh---hHHHHHHHHHhhCCCCEEEEEecCCeeee
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPG---RQQELVSKVSMASKGPTILVLMSGGPIDV 534 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~---~q~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (770)
+..+++|+||++.|... .++.+|.++- .. --.++++++.+.+.+. +|++..||+|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dll-~~N~~i~~~ii~~i~~~~~~~--ivivvsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDLF-NVNAGIVKNLVEKVAKTCPKA--CIGIITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHhCCCe--EEEEccCchHH
Confidence 45678999999999643 3344554331 11 2345566676654443 33445789964
No 57
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=34.54 E-value=22 Score=40.08 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChhHHH----HHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQE----LVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~----li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..+++|+||++.|... .+|.+|.++- ..-.+ ..+++.+..++..| |++.+||+|+.
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~dll--~~N~~I~k~i~~~I~~~a~~~~i-viVVsNPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERADLL--DINGQIFADQGKALNAVASKNCK-VLVVGNPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCCeE-EEEcCCcHHHH
Confidence 56789999999888543 4566664431 12222 33444442323343 44456899774
No 58
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=33.65 E-value=43 Score=38.87 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=34.3
Q ss_pred hhcccccceEEEcCchhhccccccccccCChHHHHHHHHHcCCCcCCC
Q 004190 275 IRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG 322 (770)
Q Consensus 275 LR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 322 (770)
|++=+||+|.|+||.++-+.+.- .....++++.+.---.-|.|+.|.
T Consensus 75 lh~f~~w~g~ilTDSGgfQv~s~-g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 75 LHKLLGFDGPIMTDSGSYQLLVY-GDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HHHHhCCCCCeEeccCCcEEEEc-CCccCCHHHHHHHHHHhCCCEEeE
Confidence 66678999999999998765432 223457777666666679999875
No 59
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=33.61 E-value=26 Score=40.20 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=32.5
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChh--HHHHHHHHHh-hCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGR--QQELVSKVSM-ASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~--q~~li~~v~~-~~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||+||++.|... ++|.+|.++--... =.+..+++.+ +.+ ..+ |++.+||+|+.
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dLl~~N~~I~k~i~~~I~~~a~p-~~i-vIVVsNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADLLDINGQIFAEQGKALNEVASR-NVK-VIVVGNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-CeE-EEEcCCcHHHH
Confidence 56789999999888543 45667654311110 1233445544 233 344 34457899774
No 60
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=32.76 E-value=57 Score=25.60 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.4
Q ss_pred ceeEEEEEEEEeCCCCCcce
Q 004190 667 RLTLGVQVDVKNVGSKDGAH 686 (770)
Q Consensus 667 ~~~~~v~v~VtNtG~~~G~e 686 (770)
++.++.+++|+|+|......
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~ 30 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATN 30 (53)
T ss_pred CCEEEEEEEEEECCCCceEe
Confidence 46899999999999866543
No 61
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.66 E-value=29 Score=38.09 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=33.8
Q ss_pred HHHhhccCEEEEEeCCCccccccccccCCCCCCh--hHHHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 472 IDASRQADATILVMGLDQSIEAEALDRAGLLLPG--RQQELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 472 ~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~--~q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
.+..++||+||++.|... .+|.+|.++--.. --.++.+++.+..+...|+++ .+||+|+.
T Consensus 71 ~~~~~~aDiVVitAG~~~---~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~~ 132 (323)
T cd00704 71 EEAFKDVDVAILVGAFPR---KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLV-VGNPANTN 132 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEE-eCCcHHHH
Confidence 357789999999988543 4566665432111 113445556554223344443 46899863
No 62
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.18 E-value=35 Score=37.28 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=33.0
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCCh--hHHHHHHHHHhhCCCCEEEEEecCCeeee
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPG--RQQELVSKVSMASKGPTILVLMSGGPIDV 534 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~--~q~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (770)
+..+++|+||++.|... .+|.+|.++---. --.+.++++.+.+++ .+ +++..||+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dll~~N~~i~~~i~~~i~~~~p~-a~-vivvtNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDLFNINAGIVRDLATAVAKACPK-AL-ILIISNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eE-EEEccCchhh
Confidence 56889999999998643 3555664431110 112344555554444 33 4445789976
No 63
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=31.89 E-value=1.4e+02 Score=28.47 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=14.2
Q ss_pred eecCCCCeEEEEEEecc
Q 004190 711 VHVPAGAQQRVGINIHV 727 (770)
Q Consensus 711 v~L~pGes~~V~~~l~~ 727 (770)
-.|+|||+++++|..+.
T Consensus 94 ~~I~pGet~TitF~adK 110 (135)
T TIGR03096 94 EVIKAGETKTISFKADK 110 (135)
T ss_pred eEECCCCeEEEEEECCC
Confidence 35899999999998874
No 64
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=31.50 E-value=54 Score=27.41 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=17.0
Q ss_pred ceeEEEEEEEEeCCCCCcce
Q 004190 667 RLTLGVQVDVKNVGSKDGAH 686 (770)
Q Consensus 667 ~~~~~v~v~VtNtG~~~G~e 686 (770)
++.++.+++|+|+|+.....
T Consensus 40 Gd~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATN 59 (76)
T ss_pred CCEEEEEEEEEECCCCeeEe
Confidence 46899999999999988554
No 65
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.42 E-value=3.5e+02 Score=29.03 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhcCCCCcceeEEeecccccc
Q 004190 179 SGKYAASYVRGLQGSDGDRLKVAASCKHFTAY 210 (770)
Q Consensus 179 ~~~~~~a~v~G~Q~~~g~~~~v~a~~KHFpg~ 210 (770)
++.++..||+-+.+ . .-++..|=|.+||.
T Consensus 103 IAT~t~~~v~~~~~-~--~~~i~~TRKt~Pg~ 131 (273)
T PRK05848 103 IATLTSRYVEALES-H--KVKLLDTRKTRPLL 131 (273)
T ss_pred HHHHHHHHHHHhcC-C--CeEEEecCCCCcch
Confidence 46777778877765 2 24689999999984
No 66
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=31.34 E-value=36 Score=37.35 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=31.6
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChhH--HHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ--QELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q--~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..+.+|+||++.|... .++.+|.++.-.... .++.+++.+..+...|+++ .+||+|+.
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~~ 134 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLV-VGNPANTN 134 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE-ecCcHHHH
Confidence 46679999999988543 334455332211111 3344555554332344444 35799763
No 67
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=30.88 E-value=36 Score=37.39 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=32.0
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..+++|+||++.|... .++.+|.++- ..- .++.+++.+..++..|+++ .+||+|+.
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~ll--~~N~~i~k~i~~~i~~~~~~~~iiiv-vsNPvDv~ 131 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDLL--SKNVKIFKEQGRALDKLAKKDCKVLV-VGNPANTN 131 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHhhCCCCeEEEE-eCCcHHHH
Confidence 46789999999888543 3444553321 122 2344556554223344444 45899873
No 68
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=30.42 E-value=1.7e+02 Score=27.93 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=40.9
Q ss_pred eeEEEEEEEEeCCCCCcce-EEEEEEeCCCCC------CCcccccccc--cceecCCCCeEEEEEEecc
Q 004190 668 LTLGVQVDVKNVGSKDGAH-TLLVFSTPPAGH------WAPHKQLVAF--EKVHVPAGAQQRVGINIHV 727 (770)
Q Consensus 668 ~~~~v~v~VtNtG~~~G~e-VvQlYv~~~~~~------~~P~k~L~gF--~kv~L~pGes~~V~~~l~~ 727 (770)
+.+.++.+++|+++.+=.- .+++-+.+..+. ..|..-|..- .+..|+||++..+++.+..
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 5789999999999875432 556666665541 2354334433 2446999999999998874
No 69
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=30.00 E-value=44 Score=36.41 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=31.0
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCC--hhHHHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLP--GRQQELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp--~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||++|+++|... .++.+|.++-.- .--.+.++++.+.+++. ++++ .++|+++.
T Consensus 68 ~~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~-~viv-~~npvd~~ 127 (309)
T cd05294 68 SDVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAPDT-KILV-VTNPVDVM 127 (309)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEE-eCCchHHH
Confidence 35889999999998653 345555433100 01123344454444443 3333 35798753
No 70
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=29.93 E-value=36 Score=37.04 Aligned_cols=54 Identities=19% Similarity=0.426 Sum_probs=30.3
Q ss_pred hhccCEEEEEeCCCccccccccccCCCCCChhHHH----HHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 475 SRQADATILVMGLDQSIEAEALDRAGLLLPGRQQE----LVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 475 a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~----li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
.+++|++|+++|... .+|.+|.++ -....+ .++++.+.+++. ++ ++..||+++.
T Consensus 67 ~~~aDiVIitag~p~---~~~~sR~~l--~~~N~~iv~~i~~~I~~~~p~~-~i-Iv~tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPR---KPGMSREDL--LSMNAGIVREVTGRIMEHSPNP-II-VVVSNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHCCCe-EE-EEecCcHHHH
Confidence 578999999999654 334444332 222333 344555544443 33 3446798873
No 71
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=29.55 E-value=2.9e+02 Score=31.71 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=31.9
Q ss_pred hHHHHHHHhhc---cCEEEEEeCCCccccccccccCCCCCChhHHHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 467 LFGAAIDASRQ---ADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 467 ~~~~a~~~a~~---aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
.+..+.+.+.. .|++|++=|. ....+|. +-++..+.++++. ++.|||.- .|-=.|.+
T Consensus 174 ~i~~al~~~~~~~~~dviii~RGG--------Gs~eDL~-~Fn~e~~~rai~~-~~~Pvis~--iGHe~D~t 233 (432)
T TIGR00237 174 SIVESIELANTKNECDVLIVGRGG--------GSLEDLW-SFNDEKVARAIFL-SKIPIISA--VGHETDFT 233 (432)
T ss_pred HHHHHHHHhhcCCCCCEEEEecCC--------CCHHHhh-hcCcHHHHHHHHc-CCCCEEEe--cCcCCCcc
Confidence 34444444333 6988776552 2233442 3456778888875 78897543 35444443
No 72
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=29.22 E-value=44 Score=29.36 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=17.2
Q ss_pred CcccccccccceecCCCCeEEEEEEecc
Q 004190 700 APHKQLVAFEKVHVPAGAQQRVGINIHV 727 (770)
Q Consensus 700 ~P~k~L~gF~kv~L~pGes~~V~~~l~~ 727 (770)
.|.--|+- ++.|+|||+++|.|-+-.
T Consensus 59 Dpc~al~~--~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 59 DPCAALQV--RVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp -EEEEEEE--EEEE-TT-EEEEEEEEEE
T ss_pred CeEEEEEE--EEEECCCCEEEEEEEEEE
Confidence 46555553 688999999999997753
No 73
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=29.19 E-value=35 Score=35.21 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHHHHhhcCC------CCcceeEEeecccccccCCCCCCCcccccccccCHHHHHhhccHHHHHHHHcCC
Q 004190 175 DPVLSGKYAASYVRGLQGSD------GDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGK 248 (770)
Q Consensus 175 DP~l~~~~~~a~v~G~Q~~~------g~~~~v~a~~KHFpg~~~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~ai~~g~ 248 (770)
+|.-+..+-.+...+.+... ...+++++.--=|-|- .++ +.+.+|+ -|+.|++...
T Consensus 105 sp~~~~~~l~~~l~~~~~E~f~vL~Ld~qnrlI~~e~lf~GT-------i~~----s~V~PRE-------I~k~Al~~nA 166 (224)
T COG2003 105 SPEAVAEYLRAELGGEEREHFVVLYLDSQNRLIATETLFIGT-------LNV----SEVHPRE-------IFKEALKYNA 166 (224)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHhcCcCceecceeEEeee-------ccc----ceecHHH-------HHHHHHHhcc
Confidence 67777777777777766520 0122354443333331 111 1233443 2778998875
Q ss_pred ccEEEecccCCCCccc-ccCHHHHHHhhhcccccceEEEcCchhh
Q 004190 249 VASVMCSYNQVNGVPT-CADPNILKRTIRGEWRLNGYIVSDCDSV 292 (770)
Q Consensus 249 ~~~vM~sy~~vng~pa-~~s~~ll~~lLR~e~Gf~G~VvSD~~~~ 292 (770)
.+||++||.-.|.|. +.....+|.-|.+-+.+-|+.+=|-.-+
T Consensus 167 -aavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 167 -AAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred -hhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 499999999988654 4455678889999999999888887544
No 74
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=29.13 E-value=31 Score=37.41 Aligned_cols=56 Identities=25% Similarity=0.425 Sum_probs=33.1
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||++|++.|... .+|.+|.++ -..- .+..+++.+.+++ .+ |++.+||+++.
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~p~-~~-vivvsNP~d~~ 119 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKSGFD-GI-FLVATNPVDIL 119 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eE-EEEeCCHHHHH
Confidence 46789999999888643 356666543 1112 3344556554433 33 45557898763
No 75
>PLN02602 lactate dehydrogenase
Probab=28.72 E-value=35 Score=37.88 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=32.8
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChh--HHHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGR--QQELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~--q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||+||++.|... .+|.+|.++-.-.. =.+..+++.+.+++ .+++ +..||+++.
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~ivi-vvtNPvdv~ 160 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNLLQRNVALFRKIIPELAKYSPD-TILL-IVSNPVDVL 160 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEE-EecCchHHH
Confidence 35789999999988643 35666654321111 12344555554444 3433 345898763
No 76
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=28.04 E-value=1.1e+02 Score=28.61 Aligned_cols=18 Identities=6% Similarity=0.147 Sum_probs=14.5
Q ss_pred HHHHHHhhccCEEEEEeC
Q 004190 469 GAAIDASRQADATILVMG 486 (770)
Q Consensus 469 ~~a~~~a~~aD~vIv~vG 486 (770)
.++.+.++.+|++++++.
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456778899999988874
No 77
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=26.58 E-value=1.3e+02 Score=33.27 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=32.0
Q ss_pred ceeEEEEEEEEeCCCCCcceEEEE---------EEeCCC-CC--CCcccccc--ccc---ceecCCCCeEEEEEEec
Q 004190 667 RLTLGVQVDVKNVGSKDGAHTLLV---------FSTPPA-GH--WAPHKQLV--AFE---KVHVPAGAQQRVGINIH 726 (770)
Q Consensus 667 ~~~~~v~v~VtNtG~~~G~eVvQl---------Yv~~~~-~~--~~P~k~L~--gF~---kv~L~pGes~~V~~~l~ 726 (770)
+..++++++|||.|+-+ |.| |+.+.. .. ..=.++|. |-. ..-++|||+++|+++..
T Consensus 281 GR~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 281 GRALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred CcEEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEe
Confidence 46799999999998743 322 111100 01 11122332 222 22489999999998865
No 78
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=26.57 E-value=1.4e+02 Score=31.51 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=34.4
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcccc----cccccce-ecCCCCeEEEEEEec
Q 004190 671 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQ----LVAFEKV-HVPAGAQQRVGINIH 726 (770)
Q Consensus 671 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~----L~gF~kv-~L~pGes~~V~~~l~ 726 (770)
.++++|+|+|+. .-.||..+.+......|.+. +.-.==+ .|+||+.+.|+|-..
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 568888999986 58999998653322223211 2222223 589999999997654
No 79
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=26.09 E-value=46 Score=36.37 Aligned_cols=56 Identities=21% Similarity=0.407 Sum_probs=32.5
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||++|++.|... .+|.+|.++- ..- .+.++++.+.+++ .+ |++.++|.++.
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dll--~~N~~i~~~i~~~i~~~~~~-~~-vivvsNP~d~~ 128 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDLV--EKNLKIFKSIVGEVMASGFD-GI-FLVASNPVDIL 128 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCC-eE-EEEccCcHHHH
Confidence 45789999999988643 4566664431 112 2334555554444 33 34456898763
No 80
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=25.75 E-value=1.6e+02 Score=31.06 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=34.2
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcccccccccc----eecCCCCeEEEEEEec
Q 004190 671 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEK----VHVPAGAQQRVGINIH 726 (770)
Q Consensus 671 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~k----v~L~pGes~~V~~~l~ 726 (770)
.++++|+|+|+. --.+|..+.+......|.+.=..|-= ..|+||+.+.|+|-..
T Consensus 42 ~~sv~l~N~~~~--p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~ 99 (246)
T PRK09926 42 DVNVRLENKGNN--PLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT 99 (246)
T ss_pred eEEEEEEeCCCC--cEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeC
Confidence 578889999986 58999999643322223211012322 2588999999987643
No 81
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=25.41 E-value=1.4e+02 Score=20.78 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH
Q 004190 327 LHTESAVQRGLLSEIDINNALVNTL 351 (770)
Q Consensus 327 ~~l~~av~~G~i~~~~ld~av~RiL 351 (770)
..|.+...+|.|+++..++.-.+||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5688889999999999999988886
No 82
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=25.27 E-value=1.6e+02 Score=30.64 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=32.6
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcccccccccc----eecCCCCeEEEEEEec
Q 004190 671 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEK----VHVPAGAQQRVGINIH 726 (770)
Q Consensus 671 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~k----v~L~pGes~~V~~~l~ 726 (770)
.++++|+|+++ ..--.||..+.+......+ .|-= ..|+||+.+.++|-..
T Consensus 44 ~~sv~i~N~~~-~~p~LvQsWv~~~~~~~~~-----pFivtPPlfrl~~~~~~~lRI~~~ 97 (228)
T PRK15188 44 QTSLPIINSSA-SNVFLIQSWVANADGSRST-----DFIITPPLFVIQPKKENILRIMYV 97 (228)
T ss_pred eEEEEEEeCCC-CccEEEEEEEecCCCCccC-----CEEEcCCeEEECCCCceEEEEEEC
Confidence 57889999985 2236799999765431110 1211 3589999999998654
No 83
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=24.93 E-value=3.2e+02 Score=24.27 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=41.6
Q ss_pred eeEEEEEEEEeCCCCCcceEEEEEEeCCCCCC-CcccccccccceecCCCCeEEEEEEecc
Q 004190 668 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHW-APHKQLVAFEKVHVPAGAQQRVGINIHV 727 (770)
Q Consensus 668 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~-~P~k~L~gF~kv~L~pGes~~V~~~l~~ 727 (770)
+..++++.|+|+.+.+-.=-=.+|==+..+.+ .|. ...++.+.|.++|+.+|...-+-
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 56899999999987654444444444555533 343 67889999999999998876554
No 84
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=24.65 E-value=1.2e+02 Score=27.07 Aligned_cols=18 Identities=28% Similarity=0.113 Sum_probs=14.7
Q ss_pred CceeEEEEEEEEeCCCCC
Q 004190 666 NRLTLGVQVDVKNVGSKD 683 (770)
Q Consensus 666 ~~~~~~v~v~VtNtG~~~ 683 (770)
+++.+..+|+|+|+|+.+
T Consensus 11 W~~Gf~~~v~v~N~~~~~ 28 (101)
T PF00553_consen 11 WGGGFQGEVTVTNNGSSP 28 (101)
T ss_dssp SSSEEEEEEEEEESSSST
T ss_pred cCCCeEEEEEEEECCCCc
Confidence 345689999999999865
No 85
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=24.64 E-value=45 Score=36.14 Aligned_cols=55 Identities=25% Similarity=0.450 Sum_probs=31.8
Q ss_pred HhhccCEEEEEeCCCccccccccccCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 474 ASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 474 ~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
.++++|++|++.|... .+|.+|.++- ..- .+..+++.+.+++ .+ |++.++|+++.
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dll--~~N~~i~~~~~~~i~~~~~~-~~-vivvsNP~d~~ 123 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDLL--EKNAKIMKSIVPKIKASGFD-GI-FLVASNPVDVI 123 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCC-eE-EEEecChHHHH
Confidence 4679999999998643 4566664431 112 2334455554443 33 44456899763
No 86
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.34 E-value=41 Score=36.63 Aligned_cols=58 Identities=19% Similarity=0.370 Sum_probs=31.8
Q ss_pred HHhhccCEEEEEeCCCccccccccccCCCCCChhHH----HHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQ----ELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 473 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~----~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
+..++||+||++.|... .+|.+|.-++|-..-. +.++++.+..++ .| +++..||+|+.
T Consensus 64 ~~~~~aDivvitaG~~~---kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~-~i-~ivvsNPvDv~ 125 (307)
T cd05290 64 DDCADADIIVITAGPSI---DPGNTDDRLDLAQTNAKIIREIMGNITKVTKE-AV-IILITNPLDIA 125 (307)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCC-eE-EEEecCcHHHH
Confidence 46789999999988643 3444421122222222 334455554444 33 34457898873
No 87
>PTZ00325 malate dehydrogenase; Provisional
Probab=24.11 E-value=53 Score=36.02 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=34.1
Q ss_pred HHHhhccCEEEEEeCCCccccccccccCCCCCCh---hHHHHHHHHHhhCCCCEEEEEecCCeeeec
Q 004190 472 IDASRQADATILVMGLDQSIEAEALDRAGLLLPG---RQQELVSKVSMASKGPTILVLMSGGPIDVA 535 (770)
Q Consensus 472 ~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~---~q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (770)
.++.+.+|+||+++|... .++.+|.++ +.. .-.++++++.+...+.+ |+.+.+|++..
T Consensus 71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~~~~~i--viv~SNPvdv~ 131 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASSAPKAI--VGIVSNPVNST 131 (321)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCeE--EEEecCcHHHH
Confidence 357789999999998643 234455443 222 22455666766544443 33456798763
No 88
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=23.20 E-value=57 Score=29.14 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=30.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCC-----CC--CCc-----ccccccccceecCCCCeEEEEEE
Q 004190 669 TLGVQVDVKNVGSKDGAHTLLVFSTPPA-----GH--WAP-----HKQLVAFEKVHVPAGAQQRVGIN 724 (770)
Q Consensus 669 ~~~v~v~VtNtG~~~G~eVvQlYv~~~~-----~~--~~P-----~k~L~gF~kv~L~pGes~~V~~~ 724 (770)
.-+++++|+|||+|. +|+=-+.-- +. .|. .--.-.=.-|..+||+.|+|++.
T Consensus 19 r~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 19 RPTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred CcceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 456888899999986 565322111 00 010 00111224567899999999874
No 89
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=23.12 E-value=3e+02 Score=24.27 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=35.4
Q ss_pred ceeEEEEEEEEeCCCCCcceEEEEEEeCCCCCC-CcccccccccceecCCCCeEEEEEEecc
Q 004190 667 RLTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHW-APHKQLVAFEKVHVPAGAQQRVGINIHV 727 (770)
Q Consensus 667 ~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~-~P~k~L~gF~kv~L~pGes~~V~~~l~~ 727 (770)
++..+++++++|+.+.+-.=--.+|==+..+.. .|. .-.++++.|.++|+.+|+..-+.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 467899999999988776555555555666632 232 25788999999999999887654
No 90
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=22.58 E-value=5.9e+02 Score=27.33 Aligned_cols=31 Identities=16% Similarity=0.028 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhcCCCCcceeEEeecccccc
Q 004190 179 SGKYAASYVRGLQGSDGDRLKVAASCKHFTAY 210 (770)
Q Consensus 179 ~~~~~~a~v~G~Q~~~g~~~~v~a~~KHFpg~ 210 (770)
++.+...||+-+.+ .+...+|.+|-|.+||.
T Consensus 105 IAT~T~~~V~~~~~-~~~~~~I~~TRKT~Pg~ 135 (277)
T TIGR01334 105 VATYTHKMVTLAKK-ISPMAVVACTRKAIPLT 135 (277)
T ss_pred HHHHHHHHHHHHHh-cCCCCEEEecCCCCCCh
Confidence 57888899988876 34445799999999984
No 91
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=22.56 E-value=1.5e+02 Score=26.80 Aligned_cols=61 Identities=16% Similarity=0.080 Sum_probs=29.2
Q ss_pred ceeEEEEEEEEeCCCCCcce-EEEEEEeCCCCC-CCcccc----cccccceecCCCCeEEEEEEecc
Q 004190 667 RLTLGVQVDVKNVGSKDGAH-TLLVFSTPPAGH-WAPHKQ----LVAFEKVHVPAGAQQRVGINIHV 727 (770)
Q Consensus 667 ~~~~~v~v~VtNtG~~~G~e-VvQlYv~~~~~~-~~P~k~----L~gF~kv~L~pGes~~V~~~l~~ 727 (770)
+.-+.|+|+|+|+|+-+-.- ..+..+.+.... -.|... ...+.-..|.||++.+..+-+..
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 35689999999998744321 113334344331 112111 11145567999999987765554
No 92
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=22.42 E-value=5.1e+02 Score=29.76 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=27.3
Q ss_pred HHcCCccEEEecccCCCC-----cccccCHHHHHHhhhccc
Q 004190 244 VMEGKVASVMCSYNQVNG-----VPTCADPNILKRTIRGEW 279 (770)
Q Consensus 244 i~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~ 279 (770)
|+++.+ ..|.+.+++.| ..|+-++.+++.+|..=+
T Consensus 51 iD~~l~-~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~ 90 (442)
T TIGR00450 51 KDDELL-FKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCL 90 (442)
T ss_pred eeeEEE-EEEcCCCCcccccEEEEECCCCHHHHHHHHHHHH
Confidence 455655 89999999987 478999999988887443
No 93
>PHA00691 hypothetical protein
Probab=22.13 E-value=92 Score=24.83 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=14.7
Q ss_pred CCCc-EEee-CeEEEEEEeC
Q 004190 736 RSGT-RRIP-LGEHNIHIGG 753 (770)
Q Consensus 736 ~~~~-~~~~-~G~y~~~vG~ 753 (770)
++|+ |+++ .|.|+++|..
T Consensus 11 ENGr~WVL~K~~~Y~V~vSG 30 (68)
T PHA00691 11 ENGRVWVLKKSDSYTVFVSG 30 (68)
T ss_pred cCCeEEEEEeCCcEEEEEec
Confidence 4564 9997 7999999985
No 94
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=22.08 E-value=2.4e+02 Score=29.27 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=33.2
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcccccccccc----eecCCCCeEEEEEEec
Q 004190 671 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEK----VHVPAGAQQRVGINIH 726 (770)
Q Consensus 671 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~k----v~L~pGes~~V~~~l~ 726 (770)
.++++|+|+|+. .-.||..+.+......+. .-|-= ..|+||+++.|+|...
T Consensus 36 ~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~---~pFivtPPl~rl~p~~~q~lRI~~~ 90 (226)
T PRK15295 36 ESSINVENKDSK--ANLVQSWLSVVDPQVTNK---QAFIITPPLFRLDAGQKNSIRVIRS 90 (226)
T ss_pred eeEEEEEeCCCC--cEEEEEEEeCCCCCCCCC---CCEEEcCCeEEECCCCceEEEEEEC
Confidence 578899999986 588999997543210010 01111 3589999999998654
No 95
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=21.92 E-value=1.4e+02 Score=36.05 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=34.2
Q ss_pred hhcccccceEEEcCchhhccccccccccCChHHHHHHHHHcCCCcCCC
Q 004190 275 IRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG 322 (770)
Q Consensus 275 LR~e~Gf~G~VvSD~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 322 (770)
|.+=+||+|.|+||.++-+-+.- .....++++.+.---.-|.|+.|.
T Consensus 74 lH~f~~w~g~ilTDSGgfQv~s~-g~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 74 IHSLIGFDGPIMTDSGSFQLSVY-GDVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred hHHHhCCCCCeEecCCceeeeec-CccccCHHHHHHHHHHhCCCEEEE
Confidence 56668999999999999775532 223457777666556679999874
No 96
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.82 E-value=2.3e+02 Score=24.89 Aligned_cols=40 Identities=18% Similarity=0.064 Sum_probs=28.6
Q ss_pred HHHHhhccCEEEEEeCCCccccccccccCCCCCChhHHHHHHHHHhhCCCCEEEE
Q 004190 471 AIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILV 525 (770)
Q Consensus 471 a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~li~~v~~~~~~pvIvV 525 (770)
..+..+++|+||++++.- ...-...+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEEE
Confidence 345788999999988632 2344567888888888897653
No 97
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.08 E-value=56 Score=35.67 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=31.8
Q ss_pred HhhccCEEEEEeCCCccccccccccCCCCCChh----HHHHHHHHHhhCCCCEEEEEecCCeeee
Q 004190 474 ASRQADATILVMGLDQSIEAEALDRAGLLLPGR----QQELVSKVSMASKGPTILVLMSGGPIDV 534 (770)
Q Consensus 474 ~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~----q~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (770)
..++||+||++.|... .+|.+|.++ -.. -.++.+++.+.+++ .+ +++.+||+++
T Consensus 68 ~~~~adivvitaG~~~---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~p~-~~-vivvsNP~d~ 125 (312)
T cd05293 68 VTANSKVVIVTAGARQ---NEGESRLDL--VQRNVDIFKGIIPKLVKYSPN-AI-LLVVSNPVDI 125 (312)
T ss_pred HhCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-cE-EEEccChHHH
Confidence 4789999999888644 345666443 111 23345556555444 33 3344689876
No 98
>PRK13555 azoreductase; Provisional
Probab=21.03 E-value=2.2e+02 Score=29.06 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=24.6
Q ss_pred HHHHHHHhhccCEEEEEeCCCccccccccccCCCCCChhHHHHHHHHHh
Q 004190 468 FGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSM 516 (770)
Q Consensus 468 ~~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~li~~v~~ 516 (770)
..+..+..+.||.+|++.-.. ++.+|..=...|+.+..
T Consensus 80 ~~~~~~~~~~AD~lvi~~P~~-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFPLW-----------NFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHHHHHcCEEEEEcCcc-----------cccchHHHHHHHHHHhc
Confidence 345567788999888765321 34567666667776654
No 99
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=20.95 E-value=7.2e+02 Score=26.33 Aligned_cols=18 Identities=17% Similarity=0.088 Sum_probs=11.2
Q ss_pred hcccccceEEEcCchhhc
Q 004190 276 RGEWRLNGYIVSDCDSVG 293 (770)
Q Consensus 276 R~e~Gf~G~VvSD~~~~~ 293 (770)
=++.||+.+.+.|+..|.
T Consensus 28 ~e~aG~d~i~vGds~~~~ 45 (254)
T cd06557 28 ADEAGVDVILVGDSLGMV 45 (254)
T ss_pred HHHcCCCEEEECHHHHHH
Confidence 345577777777766543
No 100
>PRK13556 azoreductase; Provisional
Probab=20.90 E-value=2.5e+02 Score=28.45 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHhhccCEEEEEeCCCccccccccccCCCCCChhHHHHHHHHHh
Q 004190 469 GAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSM 516 (770)
Q Consensus 469 ~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~li~~v~~ 516 (770)
++..+..+.||.+|++.-.. ++..|..=..+|+.+..
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-----------NFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-----------ccCCcHHHHHHHHHHhc
Confidence 45567788999888775321 45567777777887764
No 101
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=20.78 E-value=2.6e+02 Score=24.17 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=40.5
Q ss_pred eeEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcccccccccceecCCCCeEEEEEEeccCCCeeEEeC
Q 004190 668 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDR 736 (770)
Q Consensus 668 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 736 (770)
..+++.+++.|.+.....-.+++.+......... . .-..+.+..++...+.++++. +....|+.
T Consensus 18 ~~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 18 AKVSVEVEVRNESNKPLDVTVRVRLFDPEGKKVV--T--QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEEESSSSCEEEEEEEEEETTSEEEE--E--EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEEeCCCCcEEEEEEEEEECCCCCEEE--E--eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 4677788889999999888999998876542111 1 112334566666666455554 34677877
No 102
>PLN00106 malate dehydrogenase
Probab=20.53 E-value=76 Score=34.84 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=32.8
Q ss_pred HHHhhccCEEEEEeCCCccccccccccCCCCCChh---HHHHHHHHHhhCCCCEEEEEecCCeee
Q 004190 472 IDASRQADATILVMGLDQSIEAEALDRAGLLLPGR---QQELVSKVSMASKGPTILVLMSGGPID 533 (770)
Q Consensus 472 ~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~---q~~li~~v~~~~~~pvIvVl~~g~P~~ 533 (770)
.++.+++|+||++.|... .+|.+|.++ |+.+ =.++++++.+.+++ .| |++..||+|
T Consensus 81 ~~~l~~aDiVVitAG~~~---~~g~~R~dl-l~~N~~i~~~i~~~i~~~~p~-ai-vivvSNPvD 139 (323)
T PLN00106 81 GDALKGADLVIIPAGVPR---KPGMTRDDL-FNINAGIVKTLCEAVAKHCPN-AL-VNIISNPVN 139 (323)
T ss_pred HHHcCCCCEEEEeCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCC-eE-EEEeCCCcc
Confidence 457899999999988543 345555433 1211 13445566655544 33 344568997
No 103
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=20.49 E-value=2.4e+02 Score=29.56 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=34.4
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcccccccccc----eecCCCCeEEEEEEec
Q 004190 671 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEK----VHVPAGAQQRVGINIH 726 (770)
Q Consensus 671 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~k----v~L~pGes~~V~~~l~ 726 (770)
.++++|+|+++.. -.||..+.+......+ -|-= ..|+||+.++++|-..
T Consensus 45 ~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~-----pFivtPPlfRlep~~~~~lRI~~~ 97 (237)
T PRK15224 45 GATLSVSNPQNYP--ILVQSSVKAADKSSPA-----PFLVMPPLFRLEANQQSQLRIVRT 97 (237)
T ss_pred EEEEEEEcCCCCc--EEEEEEEeCCCCCccC-----CEEECCCeEEECCCCceEEEEEEC
Confidence 4688889999764 9999999865432110 1222 2589999999998765
No 104
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=20.37 E-value=2.7e+02 Score=29.05 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=35.3
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcccccccccc----eecCCCCeEEEEEEec
Q 004190 671 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEK----VHVPAGAQQRVGINIH 726 (770)
Q Consensus 671 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~k----v~L~pGes~~V~~~l~ 726 (770)
.++++|+|+++. --.||..+.+......|.+.=.-|-= ..|+||+.+.++|...
T Consensus 27 ~~sv~l~N~~~~--p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~ 84 (233)
T PRK15246 27 AQSLTLSNDNTT--PMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLS 84 (233)
T ss_pred eEEEEEEeCCCC--cEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEEC
Confidence 578889999975 68999999654322222211112332 2589999999998754
No 105
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=20.23 E-value=2.3e+02 Score=28.74 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=31.3
Q ss_pred eeEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcccccccccc----------eecCCCCeEEEEEEecc
Q 004190 668 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEK----------VHVPAGAQQRVGINIHV 727 (770)
Q Consensus 668 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~k----------v~L~pGes~~V~~~l~~ 727 (770)
+..++++.|+=++. ++.=+|+|+--+|.+...++.. |..| ..|+|||..+++|+|.+
T Consensus 96 G~~~l~L~vs~~~~-d~~l~v~L~dv~pdG~~~~it~--G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p 162 (218)
T PF08530_consen 96 GPPSLRLWVSSDAP-DADLFVRLSDVDPDGTSTLITR--GWLRASHRESDEKPEPLEPGEPYDVTIELQP 162 (218)
T ss_dssp EEEEEEEEEEESSS-S-EEEEEEEEEETTSSEEEEEE--EEEEGGGSSCSSST----TT-EEEEEEEEEE
T ss_pred cceEEEEEEEecCC-CcEEEEEEEEeCCCCCEEEccc--eEEEcccccCccccccCCCCcEEEEEEEEch
Confidence 34566666664444 4466777777666653322221 2222 35899999999999876
No 106
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=20.04 E-value=4.8e+02 Score=28.20 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=40.9
Q ss_pred eeEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCccccccc-ccceecCCCCeEEEEEEecc
Q 004190 668 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVA-FEKVHVPAGAQQRVGINIHV 727 (770)
Q Consensus 668 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~P~k~L~g-F~kv~L~pGes~~V~~~l~~ 727 (770)
+.+-|.|+|+|...-.-=..-+..+..+. ..+.|.+.= ++.=.|.||++..|-+..+.
T Consensus 202 ~~vav~v~l~N~~g~~PW~~~~A~L~g~~--G~~lr~~~V~~~~~~i~PG~~grVvVe~e~ 260 (289)
T PF09544_consen 202 GWVAVVVTLRNLSGQPPWTPGEARLTGPS--GEPLRALAVRWQEGPIAPGGSGRVVVEAEA 260 (289)
T ss_pred CeEEEEEEEECCCCCCCceeeEEEEECCC--CCcceeeeeecccCccCCCCceeEEEEecC
Confidence 35789999999655444445566776554 334444444 66677999999999999885
Done!