BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004191
(769 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3
Length = 843
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 661 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 720
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 739 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 798
Query: 721 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 764
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 799 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 842
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 65/139 (46%), Gaps = 25/139 (17%)
Query: 28 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 66
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKAKENDENCGPTTTVFVGNISEKA 98
Query: 67 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 127 M--VDQATREYLERYVDKK 143
+ VD T+ L+ + KK
Sbjct: 158 LVKVDAKTKAQLDEWKAKK 176
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=2
Length = 838
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 661 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 720
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 734 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 793
Query: 721 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 764
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 794 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 837
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 28 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 66
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKLKENDENCGPTTTVFVGNISEKA 98
Query: 67 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 127 M--VDQATREYLERYVDKKTENTKKLKET 153
+ VD T+ L+ + KK N ET
Sbjct: 158 LVKVDAKTKAQLDEWKAKKKANGNARPET 186
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 40/144 (27%)
Query: 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 112
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE+
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEY--------- 134
Query: 113 LRLLNKFNIDGQELMVDQATREYLERYVDKKTENT-KKLKETQDAGAGKEDESVQSVEKN 171
K+ E+T + L+ D G++ V+ K
Sbjct: 135 -----------------------------KEPESTLRALRLLHDLQIGEKKLLVKVDAKT 165
Query: 172 EPTKSPENLKDNETGNKESHDPTN 195
+ K GN TN
Sbjct: 166 KAQLDEWKAKKKANGNARPETVTN 189
>sp|Q8WZK0|US107_SCHPO U1 snRNP-associated protein usp107 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=usp107 PE=1 SV=1
Length = 695
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 54/92 (58%)
Query: 661 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 720
+ LI+ IP E L++ I+W+ + L E M+ +++KKI E++G +E +L+ + +
Sbjct: 594 RSLIEKIPVEAESLWALPIDWSKVTEDLLKEEMQAFVTKKIIEYIGIQEDSLITFTIDHI 653
Query: 721 QDHVKASQMLELLQTILDDEAEMFVLKMWRML 752
+ H A Q++ L L ++A FV K++R L
Sbjct: 654 RQHKGAEQLVSELDLALAEDAPEFVSKVYRYL 685
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 45 PTVTP-AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEF 103
P V P +++ + +++G I D ++ +L++ G + SW+R N FGF EF
Sbjct: 128 PFVPPNSQQMRRMLFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSM-TSFGFAEF 186
Query: 104 ESAEGVLRALRLLNKFNI 121
ES E RAL LN F +
Sbjct: 187 ESNEQFSRALEALNDFVV 204
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 311 KEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEK 370
K +E +R ++E E +R +ER +R K E+ ++E E ++ E ++E +RQ ++ +K
Sbjct: 2740 KRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQK 2799
Query: 371 ERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIR-EKEEDLADEVREEEEIAVAK 429
E E KR+++ + E+ E ++ E KR+++ R +KEE L + +E +
Sbjct: 2800 EEELKRQEQERLEREKQEQLQKEE------ELKRQEQERLQKEEALKRQEQERLQKEEEL 2853
Query: 430 RRAEEEQLQQQQ 441
+R E+E+L++++
Sbjct: 2854 KRQEQERLERKK 2865
Score = 33.1 bits (74), Expect = 7.7, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 278 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKI 337
K + +R + + + +R R+K+ L +KE E+ R E+ER++KE +R+
Sbjct: 2790 KRQEQERLQKEEELKRQEQERLEREKQEQL--QKEEELKR----QEQERLQKEEALKRQ- 2842
Query: 338 EEAEREYERCLKDWEYREREREK-ERQYEKEKEKERERKRKKE-----ILYDEEEDEDD 390
E ER K+ E + +E+E+ ER+ + E+E+ K K E I+ DE E D
Sbjct: 2843 -----EQERLQKEEELKRQEQERLERKKIELAEREQHIKSKLESDMVKIIKDELTKEKD 2896
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 40.8 bits (94), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 75/126 (59%), Gaps = 16/126 (12%)
Query: 278 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYE-REAERERVR-----KER 331
K + DR + DR +V D+ RDK R+ R+K RE DR + RE +RE++R K R
Sbjct: 836 KGQEKDRDKVREKDRDKVRDK-DRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGR 894
Query: 332 EQRR-----KIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEE 386
E+ R K E ++E ER LKD R++EREK R +++++++E+KR KE+ D++
Sbjct: 895 EKDRDKEQVKTREKDQEKER-LKD---RDKEREKVRDKGRDRDRDQEKKRNKELTEDKQA 950
Query: 387 DEDDSR 392
E SR
Sbjct: 951 PEQRSR 956
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 94/152 (61%), Gaps = 16/152 (10%)
Query: 291 DRSRVHDR---RGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERC 347
DR + D+ +GR+K++D + EK RE DR ++E E+ R E++Q +++E+ RE
Sbjct: 777 DREKNQDKELEKGREKDQDKELEKGREKDR-DKEMEKAR---EKDQDKELEKG-RE---- 827
Query: 348 LKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKR 407
KD + +E E+ +E+ +K +EK+R++ R K+ E+D D R++ R L EK R++
Sbjct: 828 -KDQD-KELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREK-DRDKLREKDREK 884
Query: 408 IREKEEDLADEV-REEEEIAVAKRRAEEEQLQ 438
IRE++ D E R++E++ ++ E+E+L+
Sbjct: 885 IRERDRDKGREKDRDKEQVKTREKDQEKERLK 916
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 313,342,395
Number of Sequences: 539616
Number of extensions: 15732984
Number of successful extensions: 247810
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2186
Number of HSP's successfully gapped in prelim test: 4946
Number of HSP's that attempted gapping in prelim test: 105739
Number of HSP's gapped (non-prelim): 59152
length of query: 769
length of database: 191,569,459
effective HSP length: 125
effective length of query: 644
effective length of database: 124,117,459
effective search space: 79931643596
effective search space used: 79931643596
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)