Query 004191
Match_columns 769
No_of_seqs 440 out of 1773
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 19:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 100.0 2.5E-67 5.4E-72 586.1 31.1 648 20-764 9-668 (668)
2 KOG4661 Hsp27-ERE-TATA-binding 99.9 1.4E-20 2.9E-25 206.8 18.3 84 53-136 404-487 (940)
3 PF01480 PWI: PWI domain; Int 99.7 1.2E-18 2.6E-23 151.6 5.6 68 691-758 2-74 (77)
4 smart00311 PWI PWI, domain in 99.7 2.3E-17 5E-22 142.4 8.1 69 689-757 5-73 (74)
5 KOG2146 Splicing coactivator S 99.6 6.1E-17 1.3E-21 166.8 3.6 91 671-765 27-120 (354)
6 KOG0113 U1 small nuclear ribon 99.6 2.6E-14 5.6E-19 148.9 13.9 96 50-145 97-192 (335)
7 PLN03134 glycine-rich RNA-bind 99.5 5.9E-14 1.3E-18 136.3 12.1 84 51-134 31-114 (144)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 7.7E-14 1.7E-18 152.8 14.2 82 53-134 268-349 (352)
9 KOG0121 Nuclear cap-binding pr 99.5 1.2E-13 2.6E-18 128.4 7.4 82 51-132 33-114 (153)
10 TIGR01659 sex-lethal sex-letha 99.4 2E-12 4.3E-17 142.4 15.7 83 51-133 104-186 (346)
11 PF00076 RRM_1: RNA recognitio 99.4 1.4E-12 3.1E-17 108.6 9.5 70 57-127 1-70 (70)
12 KOG0125 Ataxin 2-binding prote 99.4 2.4E-12 5.2E-17 135.8 12.1 83 50-134 92-174 (376)
13 KOG0122 Translation initiation 99.4 4.2E-12 9.1E-17 129.6 13.1 88 47-134 182-269 (270)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.9E-12 4E-17 141.9 11.1 81 53-133 2-82 (352)
15 KOG0127 Nucleolar protein fibr 99.3 2.2E-12 4.7E-17 143.2 9.7 85 54-141 117-201 (678)
16 PLN03213 repressor of silencin 99.3 4.4E-12 9.5E-17 139.0 11.6 91 52-146 8-100 (759)
17 TIGR01645 half-pint poly-U bin 99.2 2.1E-11 4.6E-16 141.7 11.2 83 52-134 202-284 (612)
18 KOG0149 Predicted RNA-binding 99.2 1.1E-11 2.5E-16 126.1 7.6 79 53-132 11-89 (247)
19 KOG0126 Predicted RNA-binding 99.2 1.5E-12 3.3E-17 127.5 1.2 80 52-131 33-112 (219)
20 PF14259 RRM_6: RNA recognitio 99.2 3.6E-11 7.7E-16 101.3 9.3 70 57-127 1-70 (70)
21 TIGR01645 half-pint poly-U bin 99.2 1.9E-11 4.2E-16 142.0 10.3 81 52-132 105-185 (612)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.2 7.2E-11 1.6E-15 135.9 14.7 82 52-133 293-374 (509)
23 KOG0146 RNA-binding protein ET 99.2 7.4E-12 1.6E-16 128.7 4.9 88 47-134 278-365 (371)
24 PLN03120 nucleic acid binding 99.2 5.8E-11 1.3E-15 124.4 10.6 75 54-132 4-78 (260)
25 KOG0148 Apoptosis-promoting RN 99.2 4.5E-11 9.9E-16 123.5 8.5 84 52-135 60-143 (321)
26 TIGR01622 SF-CC1 splicing fact 99.2 8.3E-11 1.8E-15 133.8 11.6 80 53-132 185-264 (457)
27 KOG0145 RNA-binding protein EL 99.2 1.3E-10 2.9E-15 119.3 11.6 82 53-134 277-358 (360)
28 smart00362 RRM_2 RNA recogniti 99.2 2E-10 4.4E-15 94.2 10.0 71 56-128 1-71 (72)
29 TIGR01659 sex-lethal sex-letha 99.2 1.1E-10 2.3E-15 128.9 10.8 80 54-133 193-274 (346)
30 KOG4207 Predicted splicing fac 99.1 7.6E-11 1.6E-15 117.8 7.3 80 53-132 12-91 (256)
31 KOG0108 mRNA cleavage and poly 99.1 9.1E-11 2E-15 131.7 8.4 80 55-134 19-98 (435)
32 COG0724 RNA-binding proteins ( 99.1 2.2E-10 4.7E-15 117.0 10.5 80 54-133 115-194 (306)
33 TIGR01628 PABP-1234 polyadenyl 99.1 2.2E-10 4.7E-15 134.0 11.2 82 52-134 283-364 (562)
34 smart00360 RRM RNA recognition 99.1 3.7E-10 8E-15 92.2 9.2 71 59-129 1-71 (71)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 8.6E-10 1.9E-14 126.9 15.5 79 51-134 272-351 (481)
36 TIGR01628 PABP-1234 polyadenyl 99.1 2.6E-10 5.6E-15 133.4 11.1 79 55-133 1-79 (562)
37 KOG0107 Alternative splicing f 99.1 2.1E-10 4.5E-15 112.3 8.0 77 53-134 9-85 (195)
38 TIGR01622 SF-CC1 splicing fact 99.1 3.8E-10 8.2E-15 128.4 11.5 81 51-132 86-166 (457)
39 TIGR01648 hnRNP-R-Q heterogene 99.1 3.3E-10 7.2E-15 131.5 11.1 80 52-132 56-136 (578)
40 KOG0117 Heterogeneous nuclear 99.1 4.8E-10 1E-14 122.6 10.7 81 52-132 81-162 (506)
41 PLN03121 nucleic acid binding 99.1 5.7E-10 1.2E-14 115.4 10.7 76 53-132 4-79 (243)
42 KOG0145 RNA-binding protein EL 99.1 6.6E-10 1.4E-14 114.2 10.8 84 51-134 38-121 (360)
43 KOG0111 Cyclophilin-type pepti 99.1 9.7E-11 2.1E-15 117.8 3.9 84 53-136 9-92 (298)
44 KOG0131 Splicing factor 3b, su 99.0 2.6E-10 5.6E-15 112.2 6.1 81 52-132 7-87 (203)
45 cd00590 RRM RRM (RNA recogniti 99.0 2E-09 4.4E-14 88.7 10.3 74 56-130 1-74 (74)
46 KOG0114 Predicted RNA-binding 99.0 4.2E-09 9.1E-14 95.2 12.0 80 52-134 16-95 (124)
47 KOG0124 Polypyrimidine tract-b 99.0 2.3E-10 4.9E-15 122.0 4.4 78 54-131 113-190 (544)
48 KOG0130 RNA-binding protein RB 99.0 5.6E-10 1.2E-14 105.0 6.4 81 54-134 72-152 (170)
49 KOG0148 Apoptosis-promoting RN 99.0 1.3E-09 2.9E-14 112.8 9.3 76 51-132 161-236 (321)
50 KOG0415 Predicted peptidyl pro 99.0 2.3E-09 5E-14 114.2 11.3 90 51-140 236-325 (479)
51 TIGR01642 U2AF_lg U2 snRNP aux 99.0 3E-09 6.4E-14 122.6 12.1 75 50-131 171-257 (509)
52 KOG0144 RNA-binding protein CU 98.9 4.9E-09 1.1E-13 114.4 10.5 82 51-132 31-115 (510)
53 KOG0127 Nucleolar protein fibr 98.9 2.3E-09 5E-14 119.5 7.2 83 54-136 5-87 (678)
54 KOG0105 Alternative splicing f 98.9 4.3E-09 9.2E-14 103.8 7.0 78 52-132 4-81 (241)
55 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 8.8E-09 1.9E-13 118.6 10.6 76 53-134 1-78 (481)
56 TIGR01648 hnRNP-R-Q heterogene 98.8 9.7E-09 2.1E-13 119.5 10.5 73 54-134 233-307 (578)
57 KOG0147 Transcriptional coacti 98.8 4.2E-09 9.2E-14 118.1 6.3 77 56-132 280-356 (549)
58 smart00361 RRM_1 RNA recogniti 98.8 1.8E-08 3.9E-13 85.8 8.6 61 68-128 2-69 (70)
59 PF13893 RRM_5: RNA recognitio 98.8 2.2E-08 4.7E-13 81.2 8.4 56 71-131 1-56 (56)
60 KOG0124 Polypyrimidine tract-b 98.8 1.1E-08 2.3E-13 109.4 6.9 96 37-132 186-288 (544)
61 KOG0109 RNA-binding protein LA 98.8 8.6E-09 1.9E-13 107.8 6.1 72 55-134 3-74 (346)
62 KOG0131 Splicing factor 3b, su 98.7 2.5E-08 5.3E-13 98.5 6.0 82 53-134 95-177 (203)
63 KOG4206 Spliceosomal protein s 98.6 8.9E-08 1.9E-12 97.7 8.3 78 54-134 9-90 (221)
64 KOG0144 RNA-binding protein CU 98.6 4.6E-08 1E-12 106.9 5.8 82 51-132 421-502 (510)
65 KOG0117 Heterogeneous nuclear 98.6 8.7E-08 1.9E-12 105.2 7.8 79 53-139 258-336 (506)
66 KOG4208 Nucleolar RNA-binding 98.6 2.2E-07 4.8E-12 93.6 9.0 85 50-134 45-130 (214)
67 KOG4212 RNA-binding protein hn 98.5 2.4E-07 5.3E-12 101.2 9.1 87 53-140 43-130 (608)
68 KOG0226 RNA-binding proteins [ 98.5 1.5E-07 3.2E-12 97.2 6.5 82 51-132 187-268 (290)
69 KOG0109 RNA-binding protein LA 98.5 1E-07 2.2E-12 100.0 5.0 76 51-134 75-150 (346)
70 KOG0132 RNA polymerase II C-te 98.5 2E-07 4.4E-12 107.9 7.7 79 54-138 421-499 (894)
71 KOG0123 Polyadenylate-binding 98.5 3.8E-07 8.3E-12 101.6 8.9 78 54-134 76-153 (369)
72 KOG1548 Transcription elongati 98.5 3.3E-07 7.1E-12 98.2 7.6 89 51-140 131-227 (382)
73 KOG0110 RNA-binding protein (R 98.4 2.5E-07 5.3E-12 106.7 6.7 88 49-136 608-695 (725)
74 KOG4205 RNA-binding protein mu 98.4 2.9E-07 6.3E-12 99.8 4.5 81 53-134 5-85 (311)
75 KOG0110 RNA-binding protein (R 98.3 1E-06 2.2E-11 101.7 8.3 78 54-132 515-596 (725)
76 KOG1457 RNA binding protein (c 98.3 4.2E-06 9.1E-11 85.2 11.7 82 52-133 32-117 (284)
77 KOG0153 Predicted RNA-binding 98.3 1.7E-06 3.8E-11 92.8 8.3 78 50-133 224-302 (377)
78 KOG0146 RNA-binding protein ET 98.3 1.4E-06 3.1E-11 90.3 6.8 79 53-132 18-99 (371)
79 KOG0151 Predicted splicing reg 98.3 2.4E-06 5.2E-11 98.3 9.1 85 50-134 170-257 (877)
80 KOG0123 Polyadenylate-binding 98.2 2.3E-06 5E-11 95.4 8.1 76 55-136 2-77 (369)
81 KOG0116 RasGAP SH3 binding pro 98.2 5.5E-06 1.2E-10 93.2 11.0 78 54-132 288-365 (419)
82 KOG4212 RNA-binding protein hn 98.2 2.4E-06 5.3E-11 93.6 7.5 76 51-131 533-608 (608)
83 KOG0533 RRM motif-containing p 98.2 4.2E-06 9E-11 87.8 8.8 81 51-132 80-160 (243)
84 KOG4205 RNA-binding protein mu 98.2 1.9E-06 4.1E-11 93.5 5.9 83 53-136 96-178 (311)
85 KOG4209 Splicing factor RNPS1, 98.1 4.3E-06 9.3E-11 87.5 5.8 81 51-132 98-178 (231)
86 KOG0120 Splicing factor U2AF, 98.0 5.2E-06 1.1E-10 94.5 6.0 83 52-134 287-369 (500)
87 KOG4660 Protein Mei2, essentia 98.0 6.2E-06 1.3E-10 93.3 6.0 72 51-127 72-143 (549)
88 KOG2416 Acinus (induces apopto 98.0 2.1E-05 4.5E-10 89.4 10.0 85 50-140 440-528 (718)
89 KOG0106 Alternative splicing f 97.8 1.4E-05 3.1E-10 82.3 4.4 72 55-134 2-73 (216)
90 KOG1190 Polypyrimidine tract-b 97.8 0.00015 3.3E-09 79.6 12.3 76 54-134 297-373 (492)
91 KOG4454 RNA binding protein (R 97.8 9.9E-06 2.1E-10 82.4 2.4 78 53-132 8-85 (267)
92 PF04059 RRM_2: RNA recognitio 97.7 0.00044 9.5E-09 63.1 10.6 80 55-134 2-87 (97)
93 KOG1995 Conserved Zn-finger pr 97.6 0.00015 3.2E-09 78.9 7.6 89 51-139 63-159 (351)
94 KOG2253 U1 snRNP complex, subu 97.5 0.0018 3.9E-08 75.2 16.0 35 526-561 513-547 (668)
95 KOG4307 RNA binding protein RB 97.5 0.00067 1.5E-08 78.6 11.7 77 54-130 867-943 (944)
96 KOG4849 mRNA cleavage factor I 97.5 0.00022 4.7E-09 76.8 7.1 90 54-143 80-171 (498)
97 KOG4676 Splicing factor, argin 97.4 7.7E-05 1.7E-09 81.3 2.7 64 54-122 151-214 (479)
98 KOG1457 RNA binding protein (c 97.4 0.00024 5.3E-09 72.6 5.8 68 51-122 207-274 (284)
99 KOG1029 Endocytic adaptor prot 97.4 0.042 9.2E-07 64.9 24.0 14 216-229 256-269 (1118)
100 KOG4211 Splicing factor hnRNP- 97.2 0.00084 1.8E-08 75.5 7.8 80 53-136 9-88 (510)
101 COG5175 MOT2 Transcriptional r 97.2 0.00091 2E-08 71.9 7.6 88 54-141 114-210 (480)
102 KOG0147 Transcriptional coacti 97.1 0.00027 5.8E-09 80.3 2.6 83 49-132 174-256 (549)
103 PF11608 Limkain-b1: Limkain b 97.1 0.0021 4.6E-08 56.8 7.3 68 55-132 3-75 (90)
104 KOG3152 TBP-binding protein, a 97.0 0.0004 8.6E-09 72.4 2.9 73 53-125 73-157 (278)
105 KOG1456 Heterogeneous nuclear 96.9 0.011 2.3E-07 64.7 13.0 82 50-136 283-365 (494)
106 KOG4210 Nuclear localization s 96.9 0.00067 1.5E-08 73.4 3.7 80 53-133 183-263 (285)
107 KOG4206 Spliceosomal protein s 96.8 0.0054 1.2E-07 63.3 9.2 77 51-132 143-220 (221)
108 KOG2314 Translation initiation 96.7 0.0048 1E-07 70.4 8.3 77 53-130 57-140 (698)
109 KOG4211 Splicing factor hnRNP- 96.5 0.0056 1.2E-07 69.1 7.5 86 53-140 102-188 (510)
110 PF08777 RRM_3: RNA binding mo 96.4 0.012 2.6E-07 54.6 7.5 80 54-139 1-85 (105)
111 KOG0129 Predicted RNA-binding 96.2 0.013 2.9E-07 66.5 8.2 64 51-114 367-431 (520)
112 KOG0106 Alternative splicing f 96.2 0.0036 7.7E-08 64.8 3.4 70 51-128 96-165 (216)
113 PF08952 DUF1866: Domain of un 96.2 0.02 4.3E-07 55.8 8.2 77 51-136 24-109 (146)
114 KOG1924 RhoA GTPase effector D 96.0 0.0091 2E-07 70.4 5.5 7 61-67 609-615 (1102)
115 KOG1855 Predicted RNA-binding 95.9 0.012 2.5E-07 65.6 5.5 76 44-119 221-309 (484)
116 KOG1365 RNA-binding protein Fu 95.3 0.055 1.2E-06 59.6 8.2 82 54-136 280-364 (508)
117 PF05172 Nup35_RRM: Nup53/35/4 95.1 0.07 1.5E-06 49.1 7.0 76 54-131 6-89 (100)
118 KOG0112 Large RNA-binding prot 95.0 0.047 1E-06 65.7 7.2 78 51-134 452-531 (975)
119 KOG4676 Splicing factor, argin 94.9 0.043 9.4E-07 60.6 5.9 78 54-132 7-87 (479)
120 KOG2068 MOT2 transcription fac 94.9 0.012 2.5E-07 64.0 1.5 89 55-143 78-172 (327)
121 KOG0120 Splicing factor U2AF, 94.7 0.082 1.8E-06 61.1 7.7 64 70-133 425-491 (500)
122 KOG1190 Polypyrimidine tract-b 94.7 0.066 1.4E-06 59.5 6.5 77 52-132 412-489 (492)
123 PF14605 Nup35_RRM_2: Nup53/35 94.6 0.073 1.6E-06 43.2 5.2 52 55-113 2-53 (53)
124 KOG4307 RNA binding protein RB 94.6 0.12 2.7E-06 60.6 8.8 82 52-134 432-514 (944)
125 KOG1365 RNA-binding protein Fu 94.5 0.048 1E-06 60.0 5.2 79 52-132 159-241 (508)
126 KOG0129 Predicted RNA-binding 94.4 0.19 4E-06 57.6 9.5 66 52-117 257-327 (520)
127 KOG0128 RNA-binding protein SA 94.0 0.019 4.1E-07 68.6 0.9 79 54-133 736-814 (881)
128 KOG0105 Alternative splicing f 93.9 0.18 3.8E-06 50.9 7.3 65 51-122 112-176 (241)
129 KOG1548 Transcription elongati 93.8 0.17 3.8E-06 55.3 7.6 76 52-131 263-349 (382)
130 KOG1029 Endocytic adaptor prot 93.6 1.4 3.1E-05 52.7 14.7 7 214-220 257-263 (1118)
131 KOG0128 RNA-binding protein SA 93.2 0.0096 2.1E-07 71.0 -3.4 75 54-128 667-741 (881)
132 KOG2193 IGF-II mRNA-binding pr 93.1 0.12 2.5E-06 57.7 4.9 75 55-136 2-78 (584)
133 KOG0115 RNA-binding protein p5 92.5 0.11 2.4E-06 54.7 3.7 75 55-130 32-110 (275)
134 KOG1996 mRNA splicing factor [ 92.1 0.41 8.8E-06 51.4 7.1 63 70-132 302-365 (378)
135 KOG1456 Heterogeneous nuclear 91.8 0.46 9.9E-06 52.5 7.3 74 61-139 129-204 (494)
136 PTZ00266 NIMA-related protein 91.1 1.2 2.6E-05 56.1 10.9 22 667-688 874-895 (1021)
137 KOG0112 Large RNA-binding prot 89.7 0.25 5.5E-06 59.7 3.3 79 52-131 370-448 (975)
138 KOG4285 Mitotic phosphoprotein 89.5 3.9 8.4E-05 44.4 11.5 68 59-134 202-270 (350)
139 PF08675 RNA_bind: RNA binding 87.9 1.4 3.1E-05 39.3 5.9 56 55-118 9-64 (87)
140 PTZ00266 NIMA-related protein 87.7 2.8 6.1E-05 52.9 10.7 7 111-117 129-135 (1021)
141 COG5178 PRP8 U5 snRNP spliceos 85.8 1 2.3E-05 55.7 5.2 31 53-83 71-101 (2365)
142 PF03467 Smg4_UPF3: Smg-4/UPF3 84.9 1.2 2.5E-05 45.2 4.5 80 53-132 6-96 (176)
143 PF15023 DUF4523: Protein of u 84.2 3.8 8.3E-05 40.1 7.3 74 51-132 83-160 (166)
144 KOG4574 RNA-binding protein (c 83.8 2.4 5.2E-05 51.4 6.9 73 54-132 298-372 (1007)
145 KOG2202 U2 snRNP splicing fact 83.0 0.75 1.6E-05 48.7 2.2 55 77-132 92-146 (260)
146 PF07576 BRAP2: BRCA1-associat 82.8 9.6 0.00021 35.8 9.2 67 54-122 13-80 (110)
147 PF10309 DUF2414: Protein of u 81.6 6.7 0.00014 33.1 6.9 55 54-116 5-62 (62)
148 KOG4210 Nuclear localization s 81.6 1.1 2.4E-05 48.7 3.0 81 52-132 86-166 (285)
149 PF04847 Calcipressin: Calcipr 81.6 3.7 8E-05 42.0 6.5 61 68-134 9-71 (184)
150 KOG4661 Hsp27-ERE-TATA-binding 81.5 12 0.00025 43.8 11.0 38 224-261 547-584 (940)
151 KOG2135 Proteins containing th 79.5 1.1 2.4E-05 51.1 2.1 72 55-133 373-445 (526)
152 PF03880 DbpA: DbpA RNA bindin 78.9 8.2 0.00018 33.2 6.9 67 56-131 2-74 (74)
153 TIGR03687 pupylate_cterm ubiqu 78.2 3.1 6.7E-05 30.4 3.3 24 725-748 4-27 (33)
154 KOG4660 Protein Mei2, essentia 75.8 3.9 8.5E-05 47.6 5.2 55 78-132 413-471 (549)
155 KOG0226 RNA-binding proteins [ 72.0 4.8 0.0001 42.9 4.2 77 51-128 93-172 (290)
156 KOG2591 c-Mpl binding protein, 70.9 6.4 0.00014 45.9 5.3 70 52-128 173-246 (684)
157 PF11517 Nab2: Nuclear abundan 70.4 22 0.00049 32.7 7.5 74 689-762 8-83 (107)
158 KOG4246 Predicted DNA-binding 62.3 3.6 7.8E-05 49.8 1.3 46 97-145 159-205 (1194)
159 KOG4364 Chromatin assembly fac 61.9 2.4E+02 0.0051 34.3 15.5 10 553-562 559-569 (811)
160 KOG4410 5-formyltetrahydrofola 61.8 77 0.0017 34.5 10.7 48 54-107 330-378 (396)
161 KOG0804 Cytoplasmic Zn-finger 59.4 25 0.00054 40.4 7.0 67 54-123 74-142 (493)
162 KOG2318 Uncharacterized conser 57.4 30 0.00066 40.8 7.4 72 51-122 171-294 (650)
163 KOG1925 Rac1 GTPase effector F 51.3 30 0.00065 40.2 6.0 24 54-77 306-329 (817)
164 KOG3702 Nuclear polyadenylated 50.5 18 0.00039 43.2 4.3 63 691-753 22-84 (681)
165 PF05639 Pup: Pup-like protein 46.6 7.2 0.00016 33.6 0.2 25 724-748 39-63 (69)
166 KOG2888 Putative RNA binding p 44.9 19 0.00041 39.7 3.1 15 126-140 163-178 (453)
167 PF11767 SET_assoc: Histone ly 43.5 1.1E+02 0.0023 26.3 6.8 55 65-128 11-65 (66)
168 KOG2135 Proteins containing th 37.9 35 0.00076 39.4 4.0 63 691-753 7-73 (526)
169 KOG3938 RGS-GAIP interacting p 36.6 30 0.00064 37.3 3.0 56 697-752 264-322 (334)
170 KOG1923 Rac1 GTPase effector F 35.6 91 0.002 38.3 7.0 12 698-709 696-707 (830)
171 KOG4483 Uncharacterized conser 34.3 78 0.0017 36.0 5.8 55 54-115 391-446 (528)
172 PF09707 Cas_Cas2CT1978: CRISP 33.1 67 0.0015 29.0 4.2 48 54-104 25-72 (86)
173 COG0724 RNA-binding proteins ( 30.8 47 0.001 33.4 3.3 65 51-115 222-286 (306)
174 PF13797 Post_transc_reg: Post 30.0 1.2E+02 0.0027 27.2 5.4 58 689-746 5-67 (87)
175 cd07354 HN_L-delphilin-R1_like 29.5 1E+02 0.0022 27.5 4.6 47 698-745 9-58 (80)
176 KOG4454 RNA binding protein (R 28.6 14 0.0003 38.7 -0.9 75 52-127 78-156 (267)
177 PF02607 B12-binding_2: B12 bi 27.4 1.7E+02 0.0037 24.8 5.8 51 695-750 3-54 (79)
178 KOG2295 C2H2 Zn-finger protein 26.8 11 0.00024 44.1 -2.3 69 54-122 231-299 (648)
179 KOG4019 Calcineurin-mediated s 26.8 51 0.0011 33.7 2.6 76 53-134 9-90 (193)
180 KOG2193 IGF-II mRNA-binding pr 25.6 5.3 0.00011 45.1 -4.9 77 53-132 79-155 (584)
181 KOG4246 Predicted DNA-binding 25.1 66 0.0014 39.6 3.5 12 52-63 143-154 (1194)
182 cd07347 harmonin_N_like N-term 23.8 2.4E+02 0.0053 25.0 6.0 60 694-753 5-64 (78)
183 smart00596 PRE_C2HC PRE_C2HC d 23.2 1E+02 0.0022 26.8 3.4 61 69-132 2-63 (69)
184 PF07530 PRE_C2HC: Associated 20.9 1.4E+02 0.0031 25.5 3.9 62 69-133 2-64 (68)
185 TIGR01795 CM_mono_cladeE monof 20.7 3.4E+02 0.0073 24.7 6.5 38 728-765 52-91 (94)
186 PF11671 Apis_Csd: Complementa 20.6 64 0.0014 31.2 1.9 10 354-363 27-36 (146)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=100.00 E-value=2.5e-67 Score=586.08 Aligned_cols=648 Identities=31% Similarity=0.456 Sum_probs=395.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceE
Q 004191 20 VARPPVPGIPGVRPIMPPVVRPVPLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFG 99 (769)
Q Consensus 20 ~p~Ppip~~~g~~P~~~p~~~p~~~p~~~~~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfg 99 (769)
+++|.+|+++++++.+| +.+|..|.+++ .++..+||||||...|....++.++..||.|.+|+.+. ||
T Consensus 9 a~~P~~~~~~~~~~~~p--~~~p~qp~~~~-~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fg 76 (668)
T KOG2253|consen 9 AGMPMMPQVPMVGNGVP--YVVPIQPVFQP-LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FG 76 (668)
T ss_pred CCCCCCCCCccccCCcc--cccCCcccccC-CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hc
Confidence 34444555555554444 22222333333 45678999999999999999999999999999998754 99
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCeEEEEEecchhhHHHHHHHhhhhhhhhhhhcccCCCCCccccccccCCCCCC-CCC
Q 004191 100 FCEFESAEGVLRALRLLNKFNIDGQELMVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPE 178 (769)
Q Consensus 100 FVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~kk~l~~~~~kk~~~~k~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~e 178 (769)
||.|.++....+|+..|+-..++|..+.+..-.+.....-..+.. ...... ..++... ...+. ...
T Consensus 77 f~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~~~n~~k~~~~----~~~~~~--------~f~p~~s-rr~e~i~~k 143 (668)
T KOG2253|consen 77 FCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQTIENADKEKSI----ANKESH--------KFVPSSS-RRQESIQNK 143 (668)
T ss_pred ccchhhHHHHHHHHHHhcccCCCcchhhccchhhhhcCccccccc----hhhhhc--------ccCCchh-HHHHHhhcc
Confidence 999999999999999999999999988876532111100000000 000000 0000000 00000 000
Q ss_pred ccccCcCCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCcCCccccCCCCcch
Q 004191 179 NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGDSDVD 258 (769)
Q Consensus 179 ~~~~gd~~~~e~~d~~~~g~~~eed~~~D~~~~e~i~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~~~~~~~d 258 (769)
....++--.+++..+++...+.....++|...++.+.+.++.+.....++.++..+ .+..-.++.+.+..+
T Consensus 144 ~~~l~~~~~~~~~~is~s~~s~~~~~e~d~h~~e~~~~~~~s~~~~~~~~~~~~~~---------~e~~~~s~~~~s~td 214 (668)
T KOG2253|consen 144 PLSLDEQIHKKSLQISSSAASRRQIAEADDHCLELEKTETESNSALSKEAESKKSP---------FEDTKDSKRSFSSTD 214 (668)
T ss_pred ccchhHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHhhcccccccCcccccccCc---------hhhhchhhhhhcccC
Confidence 01111111233334445455555556667666777776666554433322221110 000000000110000
Q ss_pred hhccchhhcccccccccccccccCCCCCCCCCCcccccc-ccccchhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004191 259 MIRNDIAEDKLDDETTSDTKASDHDRPETSSPDRSRVHD-RRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKI 337 (769)
Q Consensus 259 ~~~~~~~e~~~d~~~~~d~k~re~~R~~~~sr~R~r~r~-rr~R~r~rer~re~~re~~R~~r~reRer~r~~r~~~~r~ 337 (769)
..+ .+|.+ +. . +..+. .+++.+...+.|...|.+.+.+.....+..+..|....+.
T Consensus 215 ---s~~---------~~d~~--~~-------~--s~~~n~~rd~sr~~~r~R~~~r~Re~~e~~ed~~~~re~r~~~~~~ 271 (668)
T KOG2253|consen 215 ---SGS---------ESDSA--EV-------N--SSSLNYCRDRSRFDRRSRNDRRIRERLEKNEDSDEYREDRAATIKS 271 (668)
T ss_pred ---ccc---------cchhh--hh-------c--ccccccchhhccchhhhHHHHHHHHHhhhccchHHHHHhhhhhhhc
Confidence 000 00000 00 0 01111 1111111112222112222211111224455667777888
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHhhccccchhhhhhhhhhhHHHHHHHhhHHhh
Q 004191 338 EEAEREYERCLKDWEYREREREKERQYEKEKEKER------ERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREK 411 (769)
Q Consensus 338 re~Er~~~eR~r~~e~RER~re~eR~~ekererer------er~R~~e~~~d~dddr~d~rk~~rr~a~~~R~~~r~rE~ 411 (769)
.++|.+|+.|++.|+.|++.+++++++++..+..+ +.+++++|++||||++|+ .+||+++++.+|++++.+|+
T Consensus 272 ~~~E~Ayq~rl~~we~Rer~~~Ke~eke~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~~r~r~~~re~ 350 (668)
T KOG2253|consen 272 VDPEKAYQTRLVFWEIREQTKEKEREKERLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQERLRDREREA 350 (668)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999876666555555444 346789999999999997 59999999999999999999
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCcc----cchhccccCCcccCCCCCccccccCCCCC
Q 004191 412 EEDLADEVREEEEIAVAKRRAEEEQLQQQQRDALKLLSDNAVNGSLA----EESAVESKGMDVEHDYHDDSIRENHMAGD 487 (769)
Q Consensus 412 e~d~~dR~re~eE~~e~~r~~~ee~~~~~~~~~~k~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (769)
|+|.+||.++++|++|+||+..++.++.+..++.+.+.........+ +...++.........+.+++++..|+...
T Consensus 351 Ead~~dR~qeqee~~E~Kr~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~a~~ke~e~~~~~~~~q~~~e~a~~~~~~~e 430 (668)
T KOG2253|consen 351 EADRRDRHQEQEELEEIKRRHSEEEAEDPSAEEERNMEEEEALDEEEDDEAVRKEPEERDLEESHQRLGESANQEHSNDE 430 (668)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHhhhhhhcchhhHHHHhhCcccccCccccchHHhhhhhccccch
Confidence 99999999999999999999998776554444444444332222221 12222233333333444444444431111
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCcccccccccCCCCccccCCCCCCCCCcchhcccCCCCcccCCCChHHHhhhc
Q 004191 488 PSSQNGNGDESTNVPIAASDMRQSGNVPARKLGFGLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTEELQAAQ 567 (769)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~vf~~~dd~~~~~~~~~r~lvp~~y~~ee~~~~~ 567 (769)
. .+..+-.+.+.- ....-..+|...+++|+++++.+...+.+|-+-++..+++..++..++||.|+.....+
T Consensus 431 e--e~~s~r~~~~~d----~~~~i~~~ps~~~~s~~~~~n~~~~~~~~~~~~~e~~~~es~n~~~n~p~~~~~~~q~~-- 502 (668)
T KOG2253|consen 431 E--EIKSQRDDYKPD----ENDHISHAPSASLASGLVDANDRDSSPRGFKERHEREDDESLNKKINRPILASIQNQDE-- 502 (668)
T ss_pred h--hcccchhhhhhh----hhhhhhcCchhhhhhhccCCCCCCcccccccccccCcchhhhccccccccccccccccc--
Confidence 1 111111111000 01234567888899999999999999999987666666677888899999998844332
Q ss_pred CCCCCCCCCchHHHHHHHHHhhccCchhhhchHHHHhhhhhccccchhhhcccccccccchhhhhhhhhccccccccccc
Q 004191 568 PHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLD 647 (769)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (769)
.|+++++++.|+ +-+-.+.+ .+.. -++|.+-+.++ +++..+.|+|..- -.
T Consensus 503 ---~g~sa~~~~i~~---kk~~~~~v---------~~~~-------------~d~Dk~v~~~k-k~vp~dyd~n~~~-~~ 552 (668)
T KOG2253|consen 503 ---IGPSASPIPIAK---KKLPETGV---------FRED-------------DDEDKNVHEKK-KLVPLDYDRNQAR-AH 552 (668)
T ss_pred ---ccCCCCcccccc---ccCCCccc---------cccc-------------CCcccccchhh-hcccccCChhhcc-cc
Confidence 222222211111 00111111 1111 12222223333 6666666664221 11
Q ss_pred cccCcchhhhhhHHhhhhcCCCChhhhhcccccccccchhhhhhhhhhhHHHHHHhhhCcchhHHHHHHHHhhhcCCCHH
Q 004191 648 KVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKAS 727 (769)
Q Consensus 648 ~~~~~~~~~~~~~~~l~~~iP~~k~~lf~~~i~W~~vd~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~ 727 (769)
.+.+.+ .|.+++++||.+||++|++||+|+|+|+.||..+|+.+|+|||+|||+||||++|++||||||++|..|.+|+
T Consensus 553 ~~~~nd-eK~~~~ksLI~tIP~~keeLf~~pidw~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~~~q 631 (668)
T KOG2253|consen 553 SGESND-EKRKRIKSLIETIPTEKEELFAYPIDWDELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHSSPQ 631 (668)
T ss_pred cCCcch-hHHHHHHhhcccCCcchHHHhhCcccHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCHH
Confidence 122222 2455899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004191 728 QMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 764 (769)
Q Consensus 728 ~l~~~l~~~lde~a~~fv~~lWrllife~~~~~~gl~ 764 (769)
+||.+|.+|||++|++||+|||||||||+.+++.||+
T Consensus 632 ~iL~dl~~ilDEdAE~FV~KmWRlLiyel~ar~~g~~ 668 (668)
T KOG2253|consen 632 QILDDLAMILDEDAEVFVVKMWRLLIYELGARKLGLT 668 (668)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhccCC
Confidence 9999999999999999999999999999999999985
No 2
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.85 E-value=1.4e-20 Score=206.83 Aligned_cols=84 Identities=14% Similarity=0.262 Sum_probs=78.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
-+++|||++|+..+...+|+.||++||+|+..+||++..+...+|||||+|.+...|.+||.+||.++|+|+.|.|..+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 36899999999999999999999999999999999998888999999999999999999999999999999999998887
Q ss_pred hhhH
Q 004191 133 REYL 136 (769)
Q Consensus 133 kk~l 136 (769)
....
T Consensus 484 NEp~ 487 (940)
T KOG4661|consen 484 NEPG 487 (940)
T ss_pred cCcc
Confidence 5544
No 3
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.74 E-value=1.2e-18 Score=151.56 Aligned_cols=68 Identities=46% Similarity=0.808 Sum_probs=61.1
Q ss_pred hhhhhhHHHHHHhhhCcchhHHHHHHHHhhhcCC-----CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 004191 691 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV-----KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 758 (769)
Q Consensus 691 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~-----~p~~l~~~l~~~lde~a~~fv~~lWrllife~~~ 758 (769)
++|||||.+||++|||++|++||+||+++|..+. +|+.|+++|++||+++|..||.+||++|||.+..
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~q~~ 74 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISAQSS 74 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999887 9999999999999999999999999999988654
No 4
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.71 E-value=2.3e-17 Score=142.43 Aligned_cols=69 Identities=43% Similarity=0.750 Sum_probs=66.4
Q ss_pred hhhhhhhhHHHHHHhhhCcchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004191 689 LHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 757 (769)
Q Consensus 689 ~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~~lWrllife~~ 757 (769)
..++|+|||+++|++|||++|++||+||+++|+.|.+|+.++.+|..+++.+|..||.+||+||||++.
T Consensus 5 ~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~~~~~ 73 (74)
T smart00311 5 KLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLIFELK 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHHHhhc
Confidence 457899999999999999999999999999999999999999999999999999999999999999875
No 5
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=99.64 E-value=6.1e-17 Score=166.76 Aligned_cols=91 Identities=21% Similarity=0.495 Sum_probs=79.7
Q ss_pred hhhhhcccccccccchhhhhhhhhhhHHHHHHhhhCcchhHHHHHHHHhhhc--CCCHHHHHHHHHHhhh-HHHHHHHHH
Q 004191 671 KEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD--HVKASQMLELLQTILD-DEAEMFVLK 747 (769)
Q Consensus 671 k~~lf~~~i~W~~vd~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~--~~~p~~l~~~l~~~ld-e~a~~fv~~ 747 (769)
..+.+...||...|+. +.|+|||+++|+|+||+||++||+||+++|.+ ..+|+.||++|++||. .+|..||..
T Consensus 27 F~~~lekkVDmsKvnl----eVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmge 102 (354)
T KOG2146|consen 27 FPACLEKKVDMSKVNL----EVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGE 102 (354)
T ss_pred cHHHHhhhcchhhcch----hhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHHH
Confidence 4577777777777643 56799999999999999999999999999976 6699999999999999 999999999
Q ss_pred HHHHHHHHHHhhhhcccc
Q 004191 748 MWRMLIFEIKKVETGLAL 765 (769)
Q Consensus 748 lWrllife~~~~~~gl~~ 765 (769)
||-|||-+.-+..+||.-
T Consensus 103 LW~LliS~a~~s~~giP~ 120 (354)
T KOG2146|consen 103 LWSLLISEASQSQYGIPA 120 (354)
T ss_pred HHHHHHhhccccccCCch
Confidence 999999877777777753
No 6
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.6e-14 Score=148.88 Aligned_cols=96 Identities=17% Similarity=0.362 Sum_probs=91.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 50 ~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
...+.+||||+-|++.+++..|+..|..||.|..|.||++..||+++|||||+|.+..++..|....+|..|+|+.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhhHHHHHHHhhh
Q 004191 130 QATREYLERYVDKKTE 145 (769)
Q Consensus 130 ~A~kk~l~~~~~kk~~ 145 (769)
+-....+..|...+..
T Consensus 177 vERgRTvkgW~PRRLG 192 (335)
T KOG0113|consen 177 VERGRTVKGWLPRRLG 192 (335)
T ss_pred eccccccccccccccc
Confidence 9999999999977653
No 7
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.53 E-value=5.9e-14 Score=136.30 Aligned_cols=84 Identities=20% Similarity=0.353 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++.+|+.+|.+||.|..+.++.++.+|+++|||||+|.+.++|..||..||+..|+|+.|.|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34478999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8743
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.52 E-value=7.7e-14 Score=152.83 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=78.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.+.+|||+|||+.+++++|+.+|++||.|..++|++++.||.++|||||+|.+.++|..||..|||..|+|+.|.|+|++
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 35689999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
.+
T Consensus 348 ~~ 349 (352)
T TIGR01661 348 NK 349 (352)
T ss_pred CC
Confidence 65
No 9
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.2e-13 Score=128.42 Aligned_cols=82 Identities=22% Similarity=0.392 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
...++|||||||++.++++.|..||++||.|..|.+-.++.+-.++|||||+|.+.++|..||..+||+.|+.++|.|+|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35589999999999999999999999999999999999998999999999999999999999999999999999999988
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 64
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.42 E-value=2e-12 Score=142.40 Aligned_cols=83 Identities=18% Similarity=0.321 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++.+|+.+|..||.|..|+|+.+..+|+++|||||+|.+.++|..||..|||..|.+++|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44579999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cch
Q 004191 131 ATR 133 (769)
Q Consensus 131 A~k 133 (769)
+.+
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 864
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.40 E-value=1.4e-12 Score=108.63 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 57 LfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
|||+|||+.+++.+|+.+|..||.|..+.+..+ .++..+|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 6899999999999999999999999999999999885
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=2.4e-12 Score=135.77 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=78.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 50 ~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
....+++|||+|||+.+.+.+|+.+|.+||.|.++-|+.+ ...++|||||+|++..+|.+|-..|||..|.||+|.|+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 4556789999999999999999999999999999999997 56789999999999999999999999999999999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
.|+..
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 99976
No 13
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=4.2e-12 Score=129.59 Aligned_cols=88 Identities=23% Similarity=0.306 Sum_probs=82.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004191 47 VTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (769)
Q Consensus 47 ~~~~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L 126 (769)
.+..-.+.++|-|.||+.++++.+|..||.+||.|..+.+..+..||.++|||||+|.+.++|.+||..|||+-+++-.|
T Consensus 182 ~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LIL 261 (270)
T KOG0122|consen 182 DMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLIL 261 (270)
T ss_pred ccccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEE
Confidence 33445568899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchh
Q 004191 127 MVDQATRE 134 (769)
Q Consensus 127 ~Vd~A~kk 134 (769)
.|.|+.++
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99999875
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.37 E-value=1.9e-12 Score=141.92 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
+.++|||+|||+.+++.+|+.+|..||.|..|+++.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 004191 133 R 133 (769)
Q Consensus 133 k 133 (769)
+
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.2e-12 Score=143.20 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=78.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
--.|+|.||||.|...+|..+|+.||.|..+.|++. ..|+.||||||.|....+|..||..+||..|+||+|.|+||..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 467999999999999999999999999999999976 4788889999999999999999999999999999999999998
Q ss_pred hhHHHHHH
Q 004191 134 EYLERYVD 141 (769)
Q Consensus 134 k~l~~~~~ 141 (769)
+. .|..
T Consensus 196 Kd--~ye~ 201 (678)
T KOG0127|consen 196 KD--TYED 201 (678)
T ss_pred cc--cccc
Confidence 84 4553
No 16
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=4.4e-12 Score=138.98 Aligned_cols=91 Identities=19% Similarity=0.360 Sum_probs=83.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~--e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
....+||||||++.+++++|..+|..||.|..+.|++ .+| +|||||+|... .++.+||..|||..++|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4468999999999999999999999999999999994 577 99999999987 78999999999999999999999
Q ss_pred ecchhhHHHHHHHhhhh
Q 004191 130 QATREYLERYVDKKTEN 146 (769)
Q Consensus 130 ~A~kk~l~~~~~kk~~~ 146 (769)
.|.+.|+.+....+...
T Consensus 84 KAKP~YLeRLkrEReea 100 (759)
T PLN03213 84 KAKEHYLARLKREWEAA 100 (759)
T ss_pred eccHHHHHHHHHHHHHh
Confidence 99999999988766544
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=2.1e-11 Score=141.72 Aligned_cols=83 Identities=25% Similarity=0.462 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++++|+.+|..||.|.+++++.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
...
T Consensus 282 i~p 284 (612)
T TIGR01645 282 VTP 284 (612)
T ss_pred CCC
Confidence 844
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.1e-11 Score=126.08 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++||||||+|.+..+.|+.+|.+||.|+...|+.|+.+|+++|||||+|.+.+.|.+|+.. ..-.|+||+..|+.|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 468899999999999999999999999999999999999999999999999999999999983 3456899998887765
No 19
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.5e-12 Score=127.55 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
..+.-|||||||+..|+.+|..+|++||.|+.|.+++|..||+++||||+.|++..+...|+..|||+.|.||.|+|+..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999644
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.24 E-value=3.6e-11 Score=101.29 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 57 LfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
|||+|||+.++.++|..+|..||.|..+.+..++. |.++|+|||+|.+.++|..|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999865 89999999999999999999999999999999874
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=1.9e-11 Score=142.04 Aligned_cols=81 Identities=28% Similarity=0.445 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||||||+.+++++|+.+|..||.|.+|.++.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.24 E-value=7.2e-11 Score=135.94 Aligned_cols=82 Identities=22% Similarity=0.428 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+...|..||..|||+.|+|+.|.|.+|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 004191 132 TR 133 (769)
Q Consensus 132 ~k 133 (769)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 63
No 23
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=7.4e-12 Score=128.73 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=82.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004191 47 VTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (769)
Q Consensus 47 ~~~~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L 126 (769)
....++.+|+|||-.||..+++.+|..+|-.||.|++.++..|+.|..++|||||.|.++.+++.||..|||+.|+.++|
T Consensus 278 qqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 278 QQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 34457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchh
Q 004191 127 MVDQATRE 134 (769)
Q Consensus 127 ~Vd~A~kk 134 (769)
+|....++
T Consensus 358 KVQLKRPk 365 (371)
T KOG0146|consen 358 KVQLKRPK 365 (371)
T ss_pred hhhhcCcc
Confidence 99877655
No 24
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.20 E-value=5.8e-11 Score=124.35 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.++|||+|||+.+++.+|+.+|+.||.|..|.|+.+. ..+|||||+|.+..+|..||. |||..|+|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 5799999999999999999999999999999998874 357999999999999999996 99999999999998865
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=4.5e-11 Score=123.49 Aligned_cols=84 Identities=24% Similarity=0.393 Sum_probs=80.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.....||||.|...++.+.|+..|.+||.|..++|++|..|++++|||||.|.+..+|++||..|||.-|++|.|+.+||
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhh
Q 004191 132 TREY 135 (769)
Q Consensus 132 ~kk~ 135 (769)
+.|.
T Consensus 140 TRKp 143 (321)
T KOG0148|consen 140 TRKP 143 (321)
T ss_pred ccCc
Confidence 9875
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.18 E-value=8.3e-11 Score=133.76 Aligned_cols=80 Identities=28% Similarity=0.495 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++|||+|||+.+++.+|+.+|..||.|..|.++.++.+|.++|||||+|.+.+.|..||..|||+.|.|+.|.|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999998889999999999999999999999999999999999999987
No 27
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.3e-10 Score=119.28 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.+-.|||-||.+.+.+..|.++|..||.|..+++++|..|.+++|||||+|.+.++|..||..|||+.++++.|.|.|.+
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 36789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 54
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.16 E-value=2e-10 Score=94.22 Aligned_cols=71 Identities=31% Similarity=0.546 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 56 tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
+|||+|||..++..+|+.+|..||.|..+.+..++ +.+.|+|||+|.+...|..|+..|+|..|.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998875 788999999999999999999999999999999887
No 29
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.16 E-value=1.1e-10 Score=128.86 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEec
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMVDQA 131 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G--R~L~Vd~A 131 (769)
.++|||+|||+.+++++|+.+|.+||.|..+.|+.+..+|+++|||||+|.+.++|..||..||+..|.| +.|.|.+|
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 5789999999999999999999999999999999998899999999999999999999999999999875 78999988
Q ss_pred ch
Q 004191 132 TR 133 (769)
Q Consensus 132 ~k 133 (769)
..
T Consensus 273 ~~ 274 (346)
T TIGR01659 273 EE 274 (346)
T ss_pred Cc
Confidence 74
No 30
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.14 E-value=7.6e-11 Score=117.77 Aligned_cols=80 Identities=23% Similarity=0.286 Sum_probs=77.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.-++|-|-||.+.++.++|+.+|.+||.|..|.|+.++.|+.++|||||-|....+|+.||..|+|..|+|+.|.|.+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998876
No 31
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.13 E-value=9.1e-11 Score=131.70 Aligned_cols=80 Identities=36% Similarity=0.626 Sum_probs=78.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecchh
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 134 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~kk 134 (769)
+.|||||||+.++++.|..+|+..|.|.+++++.|+.||+++|||||+|.+.+.|..|+..|||.++.|++|+|+|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999844
No 32
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.13 E-value=2.2e-10 Score=117.02 Aligned_cols=80 Identities=28% Similarity=0.470 Sum_probs=77.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
.++|||||||+.+++++|..+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988999999999999999999999999999999999999999764
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.12 E-value=2.2e-10 Score=134.01 Aligned_cols=82 Identities=26% Similarity=0.426 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+||++.+++++|+.+|+.||.|.+|+++.+ .+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999998 68999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 865
No 34
>smart00360 RRM RNA recognition motif.
Probab=99.11 E-value=3.7e-10 Score=92.20 Aligned_cols=71 Identities=32% Similarity=0.541 Sum_probs=67.0
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 59 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 59 VgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
|+|||..++..+|+.+|..||.|..+.+..++.++.++|||||+|.+.+.|..|+..|++..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999887789999999999999999999999999999999998873
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.11 E-value=8.6e-10 Score=126.91 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 51 ~~~~~tLfVgNLp~-~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
..+.++|||+||++ .+++++|..+|+.||.|..|+++.+. +|||||+|.+..+|..||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998862 5899999999999999999999999999999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
++...
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 88644
No 36
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.10 E-value=2.6e-10 Score=133.36 Aligned_cols=79 Identities=22% Similarity=0.405 Sum_probs=75.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
.+|||||||+.+++.+|..+|..||.|..|+|+++..|++++|||||+|.+.++|.+||..||+..|.|+.|.|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 3799999999999999999999999999999999988999999999999999999999999999999999999998764
No 37
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=2.1e-10 Score=112.32 Aligned_cols=77 Identities=31% Similarity=0.457 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..+.||||||+..++..+|..+|..||.|..+-|..+ +.|||||+|+++.+|..|+..|+|..|+|..|.|..++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3689999999999999999999999999988777554 57999999999999999999999999999999999887
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
..
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 43
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.09 E-value=3.8e-10 Score=128.38 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++.+|+.+|..||.|..|.++.++.+|+++|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4557899999999999999999999999999999999998899999999999999999999998 999999999999987
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
+.
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 64
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.09 E-value=3.3e-10 Score=131.55 Aligned_cols=80 Identities=25% Similarity=0.401 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~-GR~L~Vd~ 130 (769)
...++|||+|||+++++++|..+|..||.|..++|+.+ .+|+++|||||+|.+.++|..||..||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34699999999999999999999999999999999999 79999999999999999999999999999985 78877766
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 54
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=4.8e-10 Score=122.62 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~-GR~L~Vd~ 130 (769)
+.+|-||||.||.++.+++|.-||.+.|.|-.++++.++.+|.++|||||+|.+.+.|+.||..||+++|. |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 55899999999999999999999999999999999999999999999999999999999999999999996 89888866
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 55
No 41
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.07 E-value=5.7e-10 Score=115.39 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.+.+|||+||++.+|+.+|+.||+.||.|..|.|+.+ +...|||||+|.+...+..||. |||..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999987 4556899999999999999996 99999999999996654
No 42
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=6.6e-10 Score=114.23 Aligned_cols=84 Identities=19% Similarity=0.348 Sum_probs=80.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|+|..||..+|.++|+.+|...|.|.+|++++|+.+|.+.|||||.|..+.+|.+||..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
|.+.
T Consensus 118 ARPS 121 (360)
T KOG0145|consen 118 ARPS 121 (360)
T ss_pred ccCC
Confidence 9865
No 43
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=9.7e-11 Score=117.79 Aligned_cols=84 Identities=25% Similarity=0.397 Sum_probs=80.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..+|||||+|...+++..|...|-+||.|+.+.++.|-.+++++|||||+|...++|.+||..||+.+|.||.|+|++|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 46899999999999999999999999999999999998999999999999999999999999999999999999999998
Q ss_pred hhhH
Q 004191 133 REYL 136 (769)
Q Consensus 133 kk~l 136 (769)
+..+
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7644
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.04 E-value=2.6e-10 Score=112.24 Aligned_cols=81 Identities=21% Similarity=0.457 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
....|||||||+..+++..|..+|-++|+|+.++++.++.+...+|||||+|.+.++|.=|+..||...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.03 E-value=2e-09 Score=88.69 Aligned_cols=74 Identities=28% Similarity=0.488 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 56 tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
+|||+|||+.++..+|+.+|..||.|..+.+..++ .+.+.|+|||+|.+.+.|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999875 347889999999999999999999999999999998864
No 46
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=4.2e-09 Score=95.17 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...+.|||.|||+.+|.+.+..+|.+||.|..+.+.. +...+|-|||.|++..+|.+|+.+|+|+.++++.|.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3468899999999999999999999999999998854 4466899999999999999999999999999999999877
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.+.
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 644
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=2.3e-10 Score=121.96 Aligned_cols=78 Identities=29% Similarity=0.468 Sum_probs=75.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
-|.||||.|.+...++.|+..|..||+|+++.+..|+.||+++||+||+|+-++.|+-|+..|||..++||.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999643
No 48
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=5.6e-10 Score=104.96 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=77.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
+-.|||.++...+++++|...|.-||.|+.+++..++.||..+||++|+|.+...|+.|+..|||..|.|..|.|+|+.-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred h
Q 004191 134 E 134 (769)
Q Consensus 134 k 134 (769)
+
T Consensus 152 ~ 152 (170)
T KOG0130|consen 152 K 152 (170)
T ss_pred c
Confidence 3
No 49
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.3e-09 Score=112.80 Aligned_cols=76 Identities=25% Similarity=0.413 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
.+..|+||||||+..++++.|++.|+.||.|..+++..+ +||+||-|.+.+.|..||..+|+.+|+|..+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 456899999999999999999999999999999999877 49999999999999999999999999999999998
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
..
T Consensus 235 GK 236 (321)
T KOG0148|consen 235 GK 236 (321)
T ss_pred cc
Confidence 75
No 50
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.3e-09 Score=114.21 Aligned_cols=90 Identities=20% Similarity=0.325 Sum_probs=83.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
.++..-|||..|++-+++++|.-+|+.||+|.+|.|+++..||.+.+||||+|.+.+++.+|.-.|.+..|+.+.|.|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHH
Q 004191 131 ATREYLERYV 140 (769)
Q Consensus 131 A~kk~l~~~~ 140 (769)
+..-....|.
T Consensus 316 SQSVsk~k~r 325 (479)
T KOG0415|consen 316 SQSVSKVKYR 325 (479)
T ss_pred hhhhhhhhcc
Confidence 8866555565
No 51
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.96 E-value=3e-09 Score=122.64 Aligned_cols=75 Identities=24% Similarity=0.326 Sum_probs=62.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcC------------CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 004191 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCG------------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (769)
Q Consensus 50 ~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G------------~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln 117 (769)
.....++|||||||+.+++.+|..+|..|+ .|..+. .++.+|||||+|.+.++|..||. ||
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 445678999999999999999999999752 222222 24567999999999999999996 99
Q ss_pred CceeCCeEEEEEec
Q 004191 118 KFNIDGQELMVDQA 131 (769)
Q Consensus 118 G~~I~GR~L~Vd~A 131 (769)
|+.|.|+.|.|...
T Consensus 244 g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 244 SIIYSNVFLKIRRP 257 (509)
T ss_pred CeEeeCceeEecCc
Confidence 99999999999643
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=4.9e-09 Score=114.35 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee-C--CeEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-D--GQELM 127 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I-~--GR~L~ 127 (769)
+....+||||.||..+++.+|+.+|.+||.|..|.+++|+.||.++|||||.|.+..+|..|+.+||.... - ..+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 34567899999999999999999999999999999999999999999999999999999999999997664 2 46888
Q ss_pred EEecc
Q 004191 128 VDQAT 132 (769)
Q Consensus 128 Vd~A~ 132 (769)
|.+|-
T Consensus 111 vk~Ad 115 (510)
T KOG0144|consen 111 VKYAD 115 (510)
T ss_pred ecccc
Confidence 88876
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=2.3e-09 Score=119.53 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=79.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
+.||||++||+.++..+|..+|+.+|+|..|.+++++.++.++|||||+|.-.+++.+|+..+++..|+|+.|.|+.|.+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 48999999999999999999999999999999999988899999999999999999999999999999999999999986
Q ss_pred hhH
Q 004191 134 EYL 136 (769)
Q Consensus 134 k~l 136 (769)
+.-
T Consensus 85 R~r 87 (678)
T KOG0127|consen 85 RAR 87 (678)
T ss_pred ccc
Confidence 643
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=4.3e-09 Score=103.80 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||||||..+.+.+|..||.+||.|..|.+-.. ..+.+||||+|+++.+|..||..-+|+.++|..|.|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999987432 355689999999999999999999999999999999988
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 7
No 55
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.85 E-value=8.8e-09 Score=118.63 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEe
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMVDQ 130 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~L--nG~~I~GR~L~Vd~ 130 (769)
++++|||+|||+.+++.+|+.+|..||.|..|.++.+ +|||||+|.+.++|..||..| |+..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999854 489999999999999999864 78999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 9754
No 56
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.84 E-value=9.7e-09 Score=119.52 Aligned_cols=73 Identities=23% Similarity=0.407 Sum_probs=68.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~--G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.++|||+||++.+++++|+.+|..| |.|..|.++. +||||+|.+.++|.+||..|||..|+|+.|.|+||
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 9999988754 59999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.+.
T Consensus 305 kp~ 307 (578)
T TIGR01648 305 KPV 307 (578)
T ss_pred cCC
Confidence 865
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.82 E-value=4.2e-09 Score=118.08 Aligned_cols=77 Identities=27% Similarity=0.521 Sum_probs=73.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 56 tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.||||||.+++++.+|+.+|..||.|..+.+..+..||.++|||||+|.+.+.|.+|+..|||++|.|+.|+|...+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 39999999999999999999999999999999998899999999999999999999999999999999999997655
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=98.81 E-value=1.8e-08 Score=85.76 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=54.7
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeecCCC--CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 68 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 68 e~~Lr~lF~----k~G~V~~ik-iv~d~~t--Gk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
+++|+.+|. .||.|..+. ++.++.+ |.++|||||+|.+.++|..|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888898 999999995 6666556 899999999999999999999999999999999976
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=2.2e-08 Score=81.18 Aligned_cols=56 Identities=32% Similarity=0.476 Sum_probs=50.7
Q ss_pred HHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 71 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 71 Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
|..+|++||.|..+.+.... .++|||+|.+.++|..|+..|||..|+|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987652 689999999999999999999999999999999986
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.1e-08 Score=109.44 Aligned_cols=96 Identities=27% Similarity=0.499 Sum_probs=86.4
Q ss_pred CCCCCCCCCCCCC-------CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHH
Q 004191 37 PVVRPVPLPTVTP-------AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGV 109 (769)
Q Consensus 37 p~~~p~~~p~~~~-------~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A 109 (769)
.+.+|+++|+..+ .......|||..+.++.++.+|+.+|..||.|++|.+.+++.+++++||||++|.+..+.
T Consensus 186 KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 186 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 3567777777666 345578999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEecc
Q 004191 110 LRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 110 ~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..||..||=+.++|..|+|..+.
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHHhhhcchhhcccceEeccccc
Confidence 99999999999999999996554
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.76 E-value=8.6e-09 Score=107.81 Aligned_cols=72 Identities=19% Similarity=0.410 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecchh
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 134 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~kk 134 (769)
..|||||||..++...|+.+|.+||+|+.|.|+++ ||||..++...+..||..|||..|+|..|.|..+..|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999987 9999999999999999999999999999999887754
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.68 E-value=2.5e-08 Score=98.49 Aligned_cols=82 Identities=26% Similarity=0.448 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~-ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.+||||||.+.+++..|..+|+.||.+.. -.+++++.||.++|||||.|.+.+.+.+|+..+||+.+++++|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 4589999999999999999999999998765 477888889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 175 ~k~ 177 (203)
T KOG0131|consen 175 FKK 177 (203)
T ss_pred Eec
Confidence 744
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.62 E-value=8.9e-08 Score=97.68 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 54 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~----lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
..||||.||+..+..+.|+. +|++||.|..|.... +.+.+|-|||.|.+...|..|+..|+|+.+-|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999998887 999999999987754 78999999999999999999999999999999999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
||..+
T Consensus 86 yA~s~ 90 (221)
T KOG4206|consen 86 YAKSD 90 (221)
T ss_pred cccCc
Confidence 99855
No 64
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=4.6e-08 Score=106.91 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
++.+.+|||++||..+.+.+|...|..||.|++.++..|+.||-++|||||+|++..+|..||..|||+.|++++|+|..
T Consensus 421 GpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 421 GPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 45678899999999999999999999999999999999989999999999999999999999999999999999999976
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
..
T Consensus 501 k~ 502 (510)
T KOG0144|consen 501 KR 502 (510)
T ss_pred ee
Confidence 54
No 65
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=8.7e-08 Score=105.24 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
....|||.||+.++|++.|+.+|..||.|..++.++| ||||.|.+.++|.+||..+||..|+|..|.|..|.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3578999999999999999999999999999998876 99999999999999999999999999999999998
Q ss_pred hhhHHHH
Q 004191 133 REYLERY 139 (769)
Q Consensus 133 kk~l~~~ 139 (769)
+..-+++
T Consensus 330 P~~k~k~ 336 (506)
T KOG0117|consen 330 PVDKKKK 336 (506)
T ss_pred Chhhhcc
Confidence 7644333
No 66
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.56 E-value=2.2e-07 Score=93.58 Aligned_cols=85 Identities=25% Similarity=0.336 Sum_probs=76.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 50 ~~~~~~tLfVgNLp~~vte~~Lr~lF~k~-G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
......-+||+.||..+.+.++..+|.+| |.|..+.+.++..||.++|||||+|.+.+.|.-|...||++.|+|+.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456789999999999999999999998 66777777799999999999999999999999999999999999999999
Q ss_pred Eecchh
Q 004191 129 DQATRE 134 (769)
Q Consensus 129 d~A~kk 134 (769)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 887766
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.53 E-value=2.4e-07 Score=101.25 Aligned_cols=87 Identities=24% Similarity=0.394 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~-k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
..+.+||.|||+++.+.+|+.||. +.|.|.+|.+..| .+|+++|||.|+|.+++.+++|+..||.+.+.||.|.|...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 356699999999999999999997 7899999999999 59999999999999999999999999999999999999765
Q ss_pred chhhHHHHH
Q 004191 132 TREYLERYV 140 (769)
Q Consensus 132 ~kk~l~~~~ 140 (769)
.-..-++|-
T Consensus 122 ~d~q~~~~~ 130 (608)
T KOG4212|consen 122 HDEQRDQYG 130 (608)
T ss_pred Cchhhhhhh
Confidence 544444443
No 68
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.51 E-value=1.5e-07 Score=97.22 Aligned_cols=82 Identities=17% Similarity=0.396 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
......||+|.|.-.++++.|-..|.+|-.....+++++..||+++|||||.|.++.++.+|+..|||..++.+.|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 44
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.50 E-value=1e-07 Score=99.96 Aligned_cols=76 Identities=26% Similarity=0.432 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++||||||.+.|+..+|+..|.+||+|..|.++.+ |+||.|.-.++|..|+..|++.+|.|++++|..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 345789999999999999999999999999999999986 999999999999999999999999999999998
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
++..
T Consensus 147 stsr 150 (346)
T KOG0109|consen 147 STSR 150 (346)
T ss_pred eccc
Confidence 8744
No 70
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.49 E-value=2e-07 Score=107.91 Aligned_cols=79 Identities=14% Similarity=0.234 Sum_probs=73.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
++|||||+|+..+++.+|..+|..||.|.+|.++.. +|||||+|....+|.+||..|+.+.|.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999998765 59999999999999999999999999999999999986
Q ss_pred hhHHH
Q 004191 134 EYLER 138 (769)
Q Consensus 134 k~l~~ 138 (769)
+-...
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65543
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=3.8e-07 Score=101.57 Aligned_cols=78 Identities=27% Similarity=0.474 Sum_probs=72.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
+..|||-||++.++...|..+|+.||.|++|++.++. +| ++|| ||.|.+.+.|.+||..|||..+.|++|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 3449999999999999999999999999999999984 66 9999 9999999999999999999999999999987764
Q ss_pred h
Q 004191 134 E 134 (769)
Q Consensus 134 k 134 (769)
+
T Consensus 153 ~ 153 (369)
T KOG0123|consen 153 K 153 (369)
T ss_pred h
Confidence 4
No 72
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.46 E-value=3.3e-07 Score=98.18 Aligned_cols=89 Identities=26% Similarity=0.382 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~--------~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
....+.|||+|||.++|.+.+..+|++||.|. .|+++.+ ..|+++|=|.|+|...+++..|+.+|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34467799999999999999999999999886 3788888 47999999999999999999999999999999
Q ss_pred CeEEEEEecchhhHHHHH
Q 004191 123 GQELMVDQATREYLERYV 140 (769)
Q Consensus 123 GR~L~Vd~A~kk~l~~~~ 140 (769)
|+.|+|..|.-.+...|.
T Consensus 210 g~~~rVerAkfq~Kge~~ 227 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYD 227 (382)
T ss_pred CcEEEEehhhhhhccCcC
Confidence 999999888765555554
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=2.5e-07 Score=106.68 Aligned_cols=88 Identities=24% Similarity=0.362 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 49 ~~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
+.....+.|+|.|||+..+--.++.||..||.|.+|.++.-...+.++|||||+|-++.+|.+|+.+|.++.|.||.|++
T Consensus 608 ~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVL 687 (725)
T KOG0110|consen 608 SKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVL 687 (725)
T ss_pred ccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhe
Confidence 33444789999999999999999999999999999999886446778999999999999999999999999999999999
Q ss_pred EecchhhH
Q 004191 129 DQATREYL 136 (769)
Q Consensus 129 d~A~kk~l 136 (769)
.||.....
T Consensus 688 EwA~~d~~ 695 (725)
T KOG0110|consen 688 EWAKSDNT 695 (725)
T ss_pred ehhccchH
Confidence 99997765
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.36 E-value=2.9e-07 Score=99.77 Aligned_cols=81 Identities=23% Similarity=0.439 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++||||+|+|.++++.|+..|.+||.|..|.++.++.+|.++||+||+|.+...+.++|. ..-+.|+|+.|-+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57999999999999999999999999999999999999999999999999999999998887 55678999998887777
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
+.
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 55
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=1e-06 Score=101.70 Aligned_cols=78 Identities=26% Similarity=0.373 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC----CCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG----TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tG----k~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
.++|||.||++.++...|..+|..+|.|.++.|...+ .+ .+.|||||+|.+.++|.+|+..|+|+.|+|+.|.|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3459999999999999999999999999999887653 22 245999999999999999999999999999999999
Q ss_pred ecc
Q 004191 130 QAT 132 (769)
Q Consensus 130 ~A~ 132 (769)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 886
No 76
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.33 E-value=4.2e-06 Score=85.16 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC-CCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG-TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 127 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tG-k~rGfgFVeF~s~e~A~~Al~~LnG~~I~---GR~L~ 127 (769)
...+||||++||.++..-.|..+|..|-....+.+-.....+ ..+-||||+|.+...|.+|++.|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 347999999999999999999999998877776654321222 23469999999999999999999999997 78899
Q ss_pred EEecch
Q 004191 128 VDQATR 133 (769)
Q Consensus 128 Vd~A~k 133 (769)
+++|..
T Consensus 112 iElAKS 117 (284)
T KOG1457|consen 112 IELAKS 117 (284)
T ss_pred eeehhc
Confidence 998873
No 77
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.29 E-value=1.7e-06 Score=92.79 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=68.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHH-HhCCceeCCeEEEE
Q 004191 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR-LLNKFNIDGQELMV 128 (769)
Q Consensus 50 ~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~-~LnG~~I~GR~L~V 128 (769)
.+..-++||||||...+++.+|+.+|.+||.|.++.++... +||||+|.+...|..|.. .+|...|+|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 34456899999999999999999999999999999987753 699999999999997765 56777789999999
Q ss_pred Eecch
Q 004191 129 DQATR 133 (769)
Q Consensus 129 d~A~k 133 (769)
.|+.+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99986
No 78
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=1.4e-06 Score=90.33 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMVD 129 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~---GR~L~Vd 129 (769)
..++||||-|...-++++++.+|..||.|.+|.+.+.+ .|.++||+||.|.+..+|..||..|||..-. .-.|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56899999999999999999999999999999999985 8999999999999999999999999987643 3568888
Q ss_pred ecc
Q 004191 130 QAT 132 (769)
Q Consensus 130 ~A~ 132 (769)
++-
T Consensus 97 ~AD 99 (371)
T KOG0146|consen 97 FAD 99 (371)
T ss_pred ecc
Confidence 876
No 79
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.26 E-value=2.4e-06 Score=98.33 Aligned_cols=85 Identities=22% Similarity=0.349 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004191 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (769)
Q Consensus 50 ~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~---tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L 126 (769)
+.+..++||||||++.+++.+|...|+.||+|.+++++..+. ....+.||||.|-+..+|.+|+..|+|..|.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 456678999999999999999999999999999999988653 24556799999999999999999999999999999
Q ss_pred EEEecchh
Q 004191 127 MVDQATRE 134 (769)
Q Consensus 127 ~Vd~A~kk 134 (769)
++.|+..-
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99998543
No 80
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=2.3e-06 Score=95.39 Aligned_cols=76 Identities=20% Similarity=0.369 Sum_probs=70.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecchh
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 134 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~kk 134 (769)
..|||| +.+|+..|..+|+.+|+|+++++.++. | +.|||||.|.++.+|.+||..||...|.|++|+|-|+..+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999996 5 9999999999999999999999999999999999998865
Q ss_pred hH
Q 004191 135 YL 136 (769)
Q Consensus 135 ~l 136 (769)
..
T Consensus 76 ~~ 77 (369)
T KOG0123|consen 76 PS 77 (369)
T ss_pred Cc
Confidence 43
No 81
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.23 E-value=5.5e-06 Score=93.16 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..+|||.|||++++..+|..+|..||.|+...|..-...++..|||||+|.+...+..||. .+-..|+|++|.|....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 4569999999999999999999999999988775532245555999999999999999999 66888999999997543
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.22 E-value=2.4e-06 Score=93.63 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....|+|||.|||+++|+..|+.-|..||.|.++.|+. +|+++| .|.|.+++.|.+|+..|||..|+|+.|.|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45679999999999999999999999999999988853 688877 8999999999999999999999999999987
Q ss_pred c
Q 004191 131 A 131 (769)
Q Consensus 131 A 131 (769)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 83
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.21 E-value=4.2e-06 Score=87.79 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
...+++|+|.|||+.|++.+|+++|..||.+..+.+.+++ +|.+.|.|-|.|...++|.+|+..|||+.++|+.+.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445889999999999999999999999999888888884 899999999999999999999999999999999988865
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 54
No 84
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.19 E-value=1.9e-06 Score=93.54 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=77.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
....||||+||..++..+++.+|.+||.|..+.++.+..+..++|||||+|.+.+.+..++. ...+.|+|+.|.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35689999999999999999999999999999999999999999999999999999998887 88999999999999999
Q ss_pred hhhH
Q 004191 133 REYL 136 (769)
Q Consensus 133 kk~l 136 (769)
++.+
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 8754
No 85
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.08 E-value=4.3e-06 Score=87.55 Aligned_cols=81 Identities=26% Similarity=0.370 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+...+||||+.+.++...+...|..||.|..+.++.+..+|.++||+||+|.+...+..|+. |||..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4567899999999999999999999999999999999998888999999999999999999999 999999999999987
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
..
T Consensus 177 ~r 178 (231)
T KOG4209|consen 177 KR 178 (231)
T ss_pred ee
Confidence 55
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.04 E-value=5.2e-06 Score=94.52 Aligned_cols=83 Identities=25% Similarity=0.462 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...+.+||||||..+++..+.+++..||.+..+.++.+..+|.++||||++|.++.-...|+..|||..+++++|.|..|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 44688999999999999999999999999999999999889999999999999999999999999999999999999888
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
...
T Consensus 367 ~~g 369 (500)
T KOG0120|consen 367 IVG 369 (500)
T ss_pred hcc
Confidence 744
No 87
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=6.2e-06 Score=93.35 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=65.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
..+..+|+|-|||..|+.+.|..+|+.||.|..+.. +-...|.+||+|.+..+|.+|+..||+..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345789999999999999999999999999999654 556679999999999999999999999999998877
No 88
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.02 E-value=2.1e-05 Score=89.39 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 004191 50 AEKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQE 125 (769)
Q Consensus 50 ~~~~~~tLfVgNLp~~vte~~Lr~lF~-k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I---~GR~ 125 (769)
.....+.|||.||-.-+|...|+.+|. .||.|..+ +.| +.+.+|||.|.+.+.|.+.+.+|||+.+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 455678999999999999999999999 56666555 333 4567999999999999999999999987 5789
Q ss_pred EEEEecchhhHHHHH
Q 004191 126 LMVDQATREYLERYV 140 (769)
Q Consensus 126 L~Vd~A~kk~l~~~~ 140 (769)
|.|+|.....|+.+.
T Consensus 514 L~adf~~~deld~hr 528 (718)
T KOG2416|consen 514 LIADFVRADELDKHR 528 (718)
T ss_pred eEeeecchhHHHHHh
Confidence 999999988887664
No 89
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.84 E-value=1.4e-05 Score=82.29 Aligned_cols=72 Identities=28% Similarity=0.447 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecchh
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 134 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~kk 134 (769)
..||||+||+.+.+.+|..||..||.+..+.+.. ||+||.|.+..+|..|+..|||.+|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4699999999999999999999999999887743 69999999999999999999999999988999988743
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.83 E-value=0.00015 Score=79.58 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=68.3
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 54 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 54 ~~tLfVgNLp~-~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.+.|.|.||.. .+|.+.|..+|+.||.|..++|.++.. --|+|.|.+...|.-|+.+|+|..|.|++|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888999876 689999999999999999999998742 479999999999999999999999999999999876
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
..
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 44
No 91
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.80 E-value=9.9e-06 Score=82.37 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
-.+||||+|+...|++..|.++|-..|+|..+.|..+. .++.+ ||||.|.+..++.-|+.++||..+-+..|.|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 36899999999999999999999999999999998874 77777 99999999999999999999999999988885443
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.66 E-value=0.00044 Score=63.08 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELMV 128 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k--~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~----GR~L~V 128 (769)
+||-|.|||-..+...|..++.. .|....+.++.|..++...|||||.|.++..|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 78999999999999999988863 466777888888888999999999999999999999999999985 577888
Q ss_pred Eecchh
Q 004191 129 DQATRE 134 (769)
Q Consensus 129 d~A~kk 134 (769)
.||.-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888743
No 93
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.59 E-value=0.00015 Score=78.86 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~--------~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
.....+|||-+||..++...|..+|.+||.|. .+++.++..|+.++|-|.|+|.+...|++||..+++..|+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567999999999999999999999999875 4678888899999999999999999999999999999999
Q ss_pred CeEEEEEecchhhHHHH
Q 004191 123 GQELMVDQATREYLERY 139 (769)
Q Consensus 123 GR~L~Vd~A~kk~l~~~ 139 (769)
|..|.|..|....--.|
T Consensus 143 gn~ikvs~a~~r~~ve~ 159 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGVES 159 (351)
T ss_pred CCCchhhhhhhccCccc
Confidence 99999988876654333
No 94
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.54 E-value=0.0018 Score=75.18 Aligned_cols=35 Identities=34% Similarity=0.634 Sum_probs=27.3
Q ss_pred CCCccccCCCCCCCCCcchhcccCCCCcccCCCChH
Q 004191 526 SGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTE 561 (769)
Q Consensus 526 ~~k~~~~~~vf~~~dd~~~~~~~~~r~lvp~~y~~e 561 (769)
..+++++.+||+++++.|-+--.++ +||||+|+..
T Consensus 513 ~~kk~~~~~v~~~~~d~Dk~v~~~k-k~vp~dyd~n 547 (668)
T KOG2253|consen 513 AKKKLPETGVFREDDDEDKNVHEKK-KLVPLDYDRN 547 (668)
T ss_pred ccccCCCcccccccCCcccccchhh-hcccccCChh
Confidence 3456789999999888874544444 9999999995
No 95
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.50 E-value=0.00067 Score=78.59 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=66.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
++-|-|.|+|++++-++|..||.-|-.+-.-.+++.-..|++.|-|.|.|++.+.|.+|...|++..|.++.|.|..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 44788999999999999999999998665443444336899999999999999999999999999999999988763
No 96
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.48 E-value=0.00022 Score=76.77 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=77.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G--~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...+|||||-|.+|+.+|...+...| .+..+++..++.+|.++|||+|...+...+...+..|.-.+|+|..-.|--.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 46799999999999999999988877 5677888888899999999999999999999999999999999988777666
Q ss_pred chhhHHHHHHHh
Q 004191 132 TREYLERYVDKK 143 (769)
Q Consensus 132 ~kk~l~~~~~kk 143 (769)
.+.++.+++...
T Consensus 160 NK~~~ak~E~~~ 171 (498)
T KOG4849|consen 160 NKTNQAKLEDAQ 171 (498)
T ss_pred chhhHHHHHHHH
Confidence 666666665443
No 97
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.41 E-value=7.7e-05 Score=81.34 Aligned_cols=64 Identities=14% Similarity=-0.023 Sum_probs=52.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
.+|+||++|+..+...++..+|..+|.|...++.. |-...||.+.|....+...|+. ++|+.+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 48899999999999999999999999998877743 4444577799988888888888 7777665
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.39 E-value=0.00024 Score=72.63 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=56.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
...+.||||.||...|+++.|+.+|+.|.....+++... +| -+++|++|+..+.|..||..|.|+.|.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 344679999999999999999999999987766665321 23 358999999999999999999998873
No 99
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.042 Score=64.92 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=8.3
Q ss_pred HHHHhhhcCCCCCC
Q 004191 216 CMVEERLKTNPLPP 229 (769)
Q Consensus 216 ~~ie~~~~~~~~~~ 229 (769)
.||+....+.|+|+
T Consensus 256 ~liema~sGq~lP~ 269 (1118)
T KOG1029|consen 256 HLIEMAKSGQPLPK 269 (1118)
T ss_pred HHHHHHhcCCCCCC
Confidence 45666666665554
No 100
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.19 E-value=0.00084 Score=75.52 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
...-|-+.+|||+||..+|..||+-|+ |..+.+++ .+|++.|=|||+|.+.+++..||. .+...++.+.|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 356677889999999999999999997 66655544 589999999999999999999999 88888999999997776
Q ss_pred hhhH
Q 004191 133 REYL 136 (769)
Q Consensus 133 kk~l 136 (769)
.+..
T Consensus 85 ~~e~ 88 (510)
T KOG4211|consen 85 GAEA 88 (510)
T ss_pred Cccc
Confidence 5533
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.19 E-value=0.00091 Score=71.88 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCCCCHHH----H--HHHHhhcCCeeEEEEeecCCC-CCCcc-e-EEEEeCCHHHHHHHHHHhCCceeCCe
Q 004191 54 QTKVYVGKIAPTADSDF----V--LSVLKVCGTVKSWKRAQYPSN-GTPKG-F-GFCEFESAEGVLRALRLLNKFNIDGQ 124 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~----L--r~lF~k~G~V~~ikiv~d~~t-Gk~rG-f-gFVeF~s~e~A~~Al~~LnG~~I~GR 124 (769)
-.-+||-+||+.+..+. | ..+|.+||.|..|.|-+...+ ....+ + .||+|.+.++|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999999887764 3 378999999998877553211 11122 2 39999999999999999999999999
Q ss_pred EEEEEecchhhHHHHHH
Q 004191 125 ELMVDQATREYLERYVD 141 (769)
Q Consensus 125 ~L~Vd~A~kk~l~~~~~ 141 (769)
-|+..|.+-||.-.|..
T Consensus 194 ~lkatYGTTKYCtsYLR 210 (480)
T COG5175 194 VLKATYGTTKYCTSYLR 210 (480)
T ss_pred eEeeecCchHHHHHHHc
Confidence 99999999999999984
No 102
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.09 E-value=0.00027 Score=80.33 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 49 ~~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
+.....+|||+--|+..++.-+|..||+.+|+|..+.++.++.++.++|.|||+|.+..++..||. |.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 345668999999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred Eecc
Q 004191 129 DQAT 132 (769)
Q Consensus 129 d~A~ 132 (769)
....
T Consensus 253 q~sE 256 (549)
T KOG0147|consen 253 QLSE 256 (549)
T ss_pred cccH
Confidence 7543
No 103
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.06 E-value=0.0021 Score=56.83 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=48.3
Q ss_pred cEEEEcCCCCCCCHH----HHHHHHhhcCC-eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 55 TKVYVGKIAPTADSD----FVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 55 ~tLfVgNLp~~vte~----~Lr~lF~k~G~-V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
..|||.|||...... -|++|+..||. |..+. .|.|+|-|.+.+.|.+|..-|+|-.+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 569999999988875 56677778884 44431 2689999999999999999999999999999999
Q ss_pred ecc
Q 004191 130 QAT 132 (769)
Q Consensus 130 ~A~ 132 (769)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 886
No 104
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.02 E-value=0.0004 Score=72.45 Aligned_cols=73 Identities=26% Similarity=0.284 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC--------CCCcc----eEEEEeCCHHHHHHHHHHhCCce
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKG----FGFCEFESAEGVLRALRLLNKFN 120 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~t--------Gk~rG----fgFVeF~s~e~A~~Al~~LnG~~ 120 (769)
..-.||++|||+.+....|+.||+.||.|-.+.+.....+ |...+ -|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999998887654333 33333 27899999999999999999999
Q ss_pred eCCeE
Q 004191 121 IDGQE 125 (769)
Q Consensus 121 I~GR~ 125 (769)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.94 E-value=0.011 Score=64.74 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=70.7
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 50 AEKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 50 ~~~~~~tLfVgNLp~~-vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
+..+++-+.|.+|... +.-+.|..+|..||.|..+++++.. .|-|.|++.+....++|+.+||+..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3456788999999876 4556899999999999999998853 368999999999999999999999999999999
Q ss_pred EecchhhH
Q 004191 129 DQATREYL 136 (769)
Q Consensus 129 d~A~kk~l 136 (769)
..+.+..+
T Consensus 358 ~~SkQ~~v 365 (494)
T KOG1456|consen 358 CVSKQNFV 365 (494)
T ss_pred eecccccc
Confidence 88876654
No 106
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.92 E-value=0.00067 Score=73.39 Aligned_cols=80 Identities=20% Similarity=0.367 Sum_probs=72.1
Q ss_pred CCcEEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 53 PQTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 53 ~~~tLf-VgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
+..++| |+|+++.++.++|+.+|..||.|..++++.++.+|.+.|||||.|.....+..++.. +...+.|+++.|.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345555 999999999999999999999999999999999999999999999999999999886 888899999999776
Q ss_pred ch
Q 004191 132 TR 133 (769)
Q Consensus 132 ~k 133 (769)
..
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 53
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.83 E-value=0.0054 Score=63.25 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVD 129 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~-GR~L~Vd 129 (769)
.++..++|+.|||..++...|..+|.+|+....+.++... .+.+||+|.+...+..|...|.|+.|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567899999999999999999999999999999987753 479999999999999999999999997 7788887
Q ss_pred ecc
Q 004191 130 QAT 132 (769)
Q Consensus 130 ~A~ 132 (769)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 764
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0048 Score=70.44 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=63.2
Q ss_pred CCcEEEEcCCCCCCCH------HHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeE
Q 004191 53 PQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQE 125 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte------~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~-GR~ 125 (769)
-...|+|.|+|---.. .-|..+|+++|+++...++.+. .|+.+||.|++|.+..+|..|+..|||+.|+ ++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3567889999864332 2556889999999999998885 4559999999999999999999999999997 777
Q ss_pred EEEEe
Q 004191 126 LMVDQ 130 (769)
Q Consensus 126 L~Vd~ 130 (769)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 77753
No 109
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.54 E-value=0.0056 Score=69.13 Aligned_cols=86 Identities=20% Similarity=0.197 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~-ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
+...|-+.+||+.|++.+|.+||+..-.|.. +.++.+ ..|+++|=|||.|++.+.|+.||. -|...|+.+.|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 4567888999999999999999987654433 555555 378899999999999999999998 7888899999999988
Q ss_pred chhhHHHHH
Q 004191 132 TREYLERYV 140 (769)
Q Consensus 132 ~kk~l~~~~ 140 (769)
....+..+.
T Consensus 180 s~~e~~~~~ 188 (510)
T KOG4211|consen 180 SRAEVKRAA 188 (510)
T ss_pred HHHHHHhhc
Confidence 866554443
No 110
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.37 E-value=0.012 Score=54.55 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=47.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCC-----ceeCCeEEEE
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-----FNIDGQELMV 128 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG-----~~I~GR~L~V 128 (769)
++.|+|.+++..++..+|+.+|..||.|.+|.+..+- .-|||-|.+.+.|..|+..+.. ..|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3678999999999999999999999999998886542 3799999999999998886653 3566777777
Q ss_pred EecchhhHHHH
Q 004191 129 DQATREYLERY 139 (769)
Q Consensus 129 d~A~kk~l~~~ 139 (769)
..-....-..|
T Consensus 75 ~vLeGeeE~~Y 85 (105)
T PF08777_consen 75 EVLEGEEEEEY 85 (105)
T ss_dssp E---HHHHHHH
T ss_pred EECCCHHHHHH
Confidence 65554433333
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.013 Score=66.55 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=60.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHH
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~-k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~ 114 (769)
-.+.+|||||+||.-++...|-.+|. -||.|..+.|=+|+.-+.++|-|-|+|.+..+..+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 45679999999999999999999999 89999999999998889999999999999999999987
No 112
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.21 E-value=0.0036 Score=64.84 Aligned_cols=70 Identities=20% Similarity=0.338 Sum_probs=61.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
....+.++|.|++..+.+.+|..+|..+|.+..... ..+++||.|....++.+|+..|+|..+.|+.|.|
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 445788999999999999999999999999843322 3479999999999999999999999999999999
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.18 E-value=0.02 Score=55.85 Aligned_cols=77 Identities=21% Similarity=0.303 Sum_probs=53.2
Q ss_pred CCCCcEEEEcCCC------CCCCHH---HHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 004191 51 EKPQTKVYVGKIA------PTADSD---FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (769)
Q Consensus 51 ~~~~~tLfVgNLp------~~vte~---~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I 121 (769)
+++..||.|.-+. ..+.+. .|.+.|..||.+.-++++.+ .-+|+|.+..+|.+|+. |+|..|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 3445677676555 123332 67778889999988887654 68999999999999999 999999
Q ss_pred CCeEEEEEecchhhH
Q 004191 122 DGQELMVDQATREYL 136 (769)
Q Consensus 122 ~GR~L~Vd~A~kk~l 136 (769)
+|+.|.|...++.-+
T Consensus 95 ~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 95 NGRTLKIRLKTPDWL 109 (146)
T ss_dssp TTEEEEEEE------
T ss_pred CCEEEEEEeCCccHH
Confidence 999999998886633
No 114
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.97 E-value=0.0091 Score=70.43 Aligned_cols=7 Identities=0% Similarity=-0.197 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 004191 61 KIAPTAD 67 (769)
Q Consensus 61 NLp~~vt 67 (769)
.||+...
T Consensus 609 vlP~gLk 615 (1102)
T KOG1924|consen 609 VLPFGLK 615 (1102)
T ss_pred cCCCCCC
Confidence 4454443
No 115
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.85 E-value=0.012 Score=65.57 Aligned_cols=76 Identities=24% Similarity=0.395 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec---CCC--CCC--------cceEEEEeCCHHHHH
Q 004191 44 LPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PSN--GTP--------KGFGFCEFESAEGVL 110 (769)
Q Consensus 44 ~p~~~~~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d---~~t--Gk~--------rGfgFVeF~s~e~A~ 110 (769)
.|......-+.+||.+.|||.+-.-+.|..||+.||.|+.|.|+.. +.+ |.+ +-||||+|...+.|.
T Consensus 221 lp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 221 LPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred CCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 3444444557899999999999988999999999999999999875 332 222 458999999999999
Q ss_pred HHHHHhCCc
Q 004191 111 RALRLLNKF 119 (769)
Q Consensus 111 ~Al~~LnG~ 119 (769)
+|...||..
T Consensus 301 KA~e~~~~e 309 (484)
T KOG1855|consen 301 KARELLNPE 309 (484)
T ss_pred HHHHhhchh
Confidence 999977643
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.33 E-value=0.055 Score=59.59 Aligned_cols=82 Identities=20% Similarity=0.181 Sum_probs=70.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCC-ee--EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGT-VK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~-V~--~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
...|-+.+||+..+-++|..||.-|-. |. .++++.+ ..|.+.|-|||.|.+.+.|.+|....|...+.+|.|.|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 556888999999999999999998873 33 3788887 5899999999999999999999998998888899999987
Q ss_pred cchhhH
Q 004191 131 ATREYL 136 (769)
Q Consensus 131 A~kk~l 136 (769)
+.-..+
T Consensus 359 ~S~eel 364 (508)
T KOG1365|consen 359 CSVEEL 364 (508)
T ss_pred ccHHHH
Confidence 775544
No 117
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.09 E-value=0.07 Score=49.10 Aligned_cols=76 Identities=21% Similarity=0.166 Sum_probs=50.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC-------CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS-------NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-E 125 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~-------tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR-~ 125 (769)
.+.|.|-+.|+. ....+...|++||.|+...-+.... ......+-.|+|.++.+|.+||. -||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456777788888 4467778899999998774111000 01223588999999999999999 999999875 5
Q ss_pred EEEEec
Q 004191 126 LMVDQA 131 (769)
Q Consensus 126 L~Vd~A 131 (769)
+-|.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 556665
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.04 E-value=0.047 Score=65.68 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMV 128 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G--R~L~V 128 (769)
....+.+|||+|..++....|...|..||.|..|.+-. | .-|+||.|.+...++.|+..|-|+.|+| +.|.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 34468899999999999999999999999998876532 2 2499999999999999999999999985 77999
Q ss_pred Eecchh
Q 004191 129 DQATRE 134 (769)
Q Consensus 129 d~A~kk 134 (769)
++|..-
T Consensus 526 dla~~~ 531 (975)
T KOG0112|consen 526 DLASPP 531 (975)
T ss_pred ccccCC
Confidence 988743
No 119
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.89 E-value=0.043 Score=60.55 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=62.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~t---Gk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
...|.|.||.+.++.++++.||...|.|..+.++.+..+ ....-.|||-|.+...+..|-. |..+.|-++.|.|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 347889999999999999999999999999998775322 2334579999999999888765 777777777777744
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
+.
T Consensus 86 ~~ 87 (479)
T KOG4676|consen 86 YG 87 (479)
T ss_pred cC
Confidence 43
No 120
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.85 E-value=0.012 Score=64.05 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCC--C-CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 55 TKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPS--N-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr---~lF~k~G~V~~ikiv~d~~--t-Gk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
.-+||-+|+..+.+..+. ..|.+||.|..+.+..++. . -...+-+||+|...++|..||...+|+.++|+.|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 568999999887766433 6789999999998877652 1 122234899999999999999999999999999999
Q ss_pred EecchhhHHHHHHHh
Q 004191 129 DQATREYLERYVDKK 143 (769)
Q Consensus 129 d~A~kk~l~~~~~kk 143 (769)
.+.+.+|-..|...-
T Consensus 158 ~~gttkycs~~l~~~ 172 (327)
T KOG2068|consen 158 SLGTTKYCSFYLRND 172 (327)
T ss_pred hhCCCcchhHHhhhh
Confidence 999999998887543
No 121
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.67 E-value=0.082 Score=61.07 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=52.1
Q ss_pred HHHHHHhhcCCeeEEEEeecCCC---CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 70 FVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 70 ~Lr~lF~k~G~V~~ikiv~d~~t---Gk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
+++.-+++||.|..|.+++.-.+ .-..|..||+|.+.+++++|+..|+|..|.|+.|...|.-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 34444568999999998876222 33467889999999999999999999999999999988763
No 122
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.65 E-value=0.066 Score=59.51 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=64.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEe
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G-R~L~Vd~ 130 (769)
+++.+|...|||.++++++|+.+|..-|..+..... -++.+-++++.+.+.+.|..|+..+|.+.+++ .-|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 556799999999999999999999988876554432 34556699999999999999999999999984 5899988
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
+.
T Consensus 488 Sk 489 (492)
T KOG1190|consen 488 SK 489 (492)
T ss_pred ec
Confidence 75
No 123
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.62 E-value=0.073 Score=43.20 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=41.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHH
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 113 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al 113 (769)
+.|-|.|.++...+..| .+|..||.|..+.+.. ...+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 56788888877765544 5788999999988752 2348999999999999985
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.58 E-value=0.12 Score=60.59 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~-ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
.....|||-.||..++...+..+|...-.|.. |.+.+.+ +++.++.|||.|.....+..|+..-+.+.++.+.|.|+-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 34678999999999999999999987666665 5555554 889999999999999988888887888889999999976
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
...+
T Consensus 511 i~~~ 514 (944)
T KOG4307|consen 511 IADY 514 (944)
T ss_pred hhhH
Confidence 6544
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.54 E-value=0.048 Score=60.01 Aligned_cols=79 Identities=23% Similarity=0.229 Sum_probs=60.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhh----cCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKV----CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k----~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
...-.|-+.+||++++..++..||.. .|....+-+++.+ +|++.|-|||.|...+.|..||. -|...|+-|.|.
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIE 236 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIE 236 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHH
Confidence 34566778899999999999999962 2345566666653 89999999999999999999998 566666655555
Q ss_pred EEecc
Q 004191 128 VDQAT 132 (769)
Q Consensus 128 Vd~A~ 132 (769)
+-.++
T Consensus 237 lFRST 241 (508)
T KOG1365|consen 237 LFRST 241 (508)
T ss_pred HHHHh
Confidence 54443
No 126
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.19 Score=57.62 Aligned_cols=66 Identities=24% Similarity=0.394 Sum_probs=47.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEeecCCC-CCCcc---eEEEEeCCHHHHHHHHHHhC
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSN-GTPKG---FGFCEFESAEGVLRALRLLN 117 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~-~ikiv~d~~t-Gk~rG---fgFVeF~s~e~A~~Al~~Ln 117 (769)
.-.+.||||+||+.+++..|...|..||.+. .|-.-..... --++| |+|+.|.+..++...|..+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 4478999999999999999999999999763 3321011001 12345 99999999988887665544
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.03 E-value=0.019 Score=68.64 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=67.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
...|||.|.|+..|.+.|+.+|..+|.+++..+++. ..|+++|.+||.|.+..++.+++....+..+.-+.+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 357999999999999999999999999999998887 4899999999999999999999887777777655555554443
No 128
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.93 E-value=0.18 Score=50.93 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=58.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
......|.|.+||++.++++|+.+....|.|+...+.++ |+|.|+|...++..=||..|....+.
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 344678999999999999999999999999999999887 69999999999999999999877764
No 129
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=93.82 E-value=0.17 Score=55.26 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=59.2
Q ss_pred CCCcEEEEcCCCC----CCCH-------HHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce
Q 004191 52 KPQTKVYVGKIAP----TADS-------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (769)
Q Consensus 52 ~~~~tLfVgNLp~----~vte-------~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~ 120 (769)
...+||.+.||-. ..+. ++|+.--.+||.|..+.|.- ..+.|.+-|.|.+.+.|..||..|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3468999999843 2221 24444457999999988743 3567999999999999999999999999
Q ss_pred eCCeEEEEEec
Q 004191 121 IDGQELMVDQA 131 (769)
Q Consensus 121 I~GR~L~Vd~A 131 (769)
|+||.|.....
T Consensus 339 fdgRql~A~i~ 349 (382)
T KOG1548|consen 339 FDGRQLTASIW 349 (382)
T ss_pred ecceEEEEEEe
Confidence 99999998654
No 130
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.56 E-value=1.4 Score=52.75 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 004191 214 LTCMVEE 220 (769)
Q Consensus 214 i~~~ie~ 220 (769)
+..|...
T Consensus 257 liema~s 263 (1118)
T KOG1029|consen 257 LIEMAKS 263 (1118)
T ss_pred HHHHHhc
Confidence 3333333
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.18 E-value=0.0096 Score=71.01 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=62.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
.+++||.||+..+...+|...|..+|.+..+.+.....++..+|+||+.|..+..+.+||....+..++...+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 478999999999999999999999998887777655568999999999999999999999955555555444444
No 132
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.09 E-value=0.12 Score=57.72 Aligned_cols=75 Identities=16% Similarity=0.262 Sum_probs=59.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEEecc
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELMVDQAT 132 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~-V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~-I~GR~L~Vd~A~ 132 (769)
..+|+|||.+.++..+|..+|.-.-. ...-.++. .||+||.+.+...|.+|+..|+|.. +.|+.+.|....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999974311 11112222 3899999999999999999999865 789999999888
Q ss_pred hhhH
Q 004191 133 REYL 136 (769)
Q Consensus 133 kk~l 136 (769)
++..
T Consensus 75 ~kkq 78 (584)
T KOG2193|consen 75 PKKQ 78 (584)
T ss_pred hHHH
Confidence 6644
No 133
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=92.54 E-value=0.11 Score=54.69 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=63.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC----CceeCCeEEEEEe
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN----KFNIDGQELMVDQ 130 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln----G~~I~GR~L~Vd~ 130 (769)
..|||.||+..++.+.|..-|..||.|....++.| ..|++.+-++|.|.....+..|+..++ +.+..++.+.|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 78999999999999999999999999988877777 578999999999999999999998774 2334566666643
No 134
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.10 E-value=0.41 Score=51.40 Aligned_cols=63 Identities=21% Similarity=0.133 Sum_probs=50.9
Q ss_pred HHHHHHhhcCCeeEEEEeecCCCCCCcc-eEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 70 FVLSVLKVCGTVKSWKRAQYPSNGTPKG-FGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 70 ~Lr~lF~k~G~V~~ikiv~d~~tGk~rG-fgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.+..-..+||.|..|.|.-.+....... --||+|...++|.+|+..|||..|+|+.+..+|..
T Consensus 302 e~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 302 ETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 5566678999999888776653333333 37999999999999999999999999999988765
No 135
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=91.82 E-value=0.46 Score=52.50 Aligned_cols=74 Identities=24% Similarity=0.207 Sum_probs=62.1
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-C-eEEEEEecchhhHHH
Q 004191 61 KIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-G-QELMVDQATREYLER 138 (769)
Q Consensus 61 NLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~-G-R~L~Vd~A~kk~l~~ 138 (769)
|--+.+|.+.|..+-..+|+|..|.|... +|. -|.|+|.+.+.|++|...|||..|. | ..|+|+||.+..+.=
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV 203 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNV 203 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeee
Confidence 44567889999999999999999988764 443 5999999999999999999999985 3 679999999886643
Q ss_pred H
Q 004191 139 Y 139 (769)
Q Consensus 139 ~ 139 (769)
+
T Consensus 204 ~ 204 (494)
T KOG1456|consen 204 Q 204 (494)
T ss_pred e
Confidence 3
No 136
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.06 E-value=1.2 Score=56.15 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=11.8
Q ss_pred CCCChhhhhcccccccccchhh
Q 004191 667 IPKTKEELFSYEINWAVYDKHE 688 (769)
Q Consensus 667 iP~~k~~lf~~~i~W~~vd~~~ 688 (769)
|..-|..|++-.++=..|.+..
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~ 895 (1021)
T PTZ00266 874 INAKKASIYNNTCDEGTLSKKG 895 (1021)
T ss_pred hhhhhhhhhhhccccccccccC
Confidence 4445556665555555554443
No 137
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=89.70 E-value=0.25 Score=59.72 Aligned_cols=79 Identities=9% Similarity=0.076 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
....|||+|||...+++..|+..|..||.|..+.|-+.+ -+.--.|+||.|.+...+-.|+..+.+..|....+.+.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 347899999999999999999999999999988875542 3444569999999999999999989998887555555443
No 138
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.50 E-value=3.9 Score=44.44 Aligned_cols=68 Identities=26% Similarity=0.348 Sum_probs=50.2
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEecchh
Q 004191 59 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMVDQATRE 134 (769)
Q Consensus 59 VgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR-~L~Vd~A~kk 134 (769)
|-+.|+... ..|..+|.+||.|+...... +| .|-+|-|.+..+|.+||. .||..|+|- .|-|..++.+
T Consensus 202 VfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 202 VFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred EeccCccch-hHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 336665543 46778899999998765431 22 489999999999999999 999999864 4666666643
No 139
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.92 E-value=1.4 Score=39.27 Aligned_cols=56 Identities=9% Similarity=0.104 Sum_probs=42.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCC
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK 118 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG 118 (769)
..||--..|..+...+|.++|+.||.| .+..+.+ .-|||.....+.|..++..+.-
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 345555599999999999999999986 4666666 3799999999999999998863
No 140
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=87.73 E-value=2.8 Score=52.91 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=3.2
Q ss_pred HHHHHhC
Q 004191 111 RALRLLN 117 (769)
Q Consensus 111 ~Al~~Ln 117 (769)
.||..||
T Consensus 129 ~ALaYLH 135 (1021)
T PTZ00266 129 HALAYCH 135 (1021)
T ss_pred HHHHHHH
Confidence 3444444
No 141
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=85.82 E-value=1 Score=55.69 Aligned_cols=31 Identities=10% Similarity=0.185 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS 83 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ 83 (769)
...+++|-.+-..+..++|+.+.+.||...+
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s 101 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPS 101 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchh
Confidence 3567777777777888888888888875444
No 142
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.89 E-value=1.2 Score=45.17 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=50.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEee---cCCCCC--CcceEEEEeCCHHHHHHHHHHhCCceeC---C
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQ---YPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID---G 123 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k-~G~V~~ikiv~---d~~tGk--~rGfgFVeF~s~e~A~~Al~~LnG~~I~---G 123 (769)
..+.|.|.+||++.|++.+...+.. +|....|..+. +..+.+ ..+-|||.|.+.+++...+..++|+.|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4679999999999999998887776 66553343332 211212 2356999999999999999999998874 2
Q ss_pred --eEEEEEecc
Q 004191 124 --QELMVDQAT 132 (769)
Q Consensus 124 --R~L~Vd~A~ 132 (769)
....|.+|.
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 345667777
No 143
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=84.21 E-value=3.8 Score=40.11 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=54.1
Q ss_pred CCCCcEEEEcCCCCCCCH----HHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004191 51 EKPQTKVYVGKIAPTADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte----~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L 126 (769)
+++-.||.|.=|..++.. ..+...++.||+|.++.+. |+ .-|.|+|.+..+|-.|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 455678888866655543 3455667899999998762 22 3699999999999999998886 4556777
Q ss_pred EEEecc
Q 004191 127 MVDQAT 132 (769)
Q Consensus 127 ~Vd~A~ 132 (769)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 777643
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=83.84 E-value=2.4 Score=51.43 Aligned_cols=73 Identities=22% Similarity=0.167 Sum_probs=60.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEec
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMVDQA 131 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~--GR~L~Vd~A 131 (769)
..+.++.|.+-..+-..|-.+|..||.|.++...++- ..+.|+|...+.|..|+.+|+|.++. |-+.+|.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 4456677777788888999999999999887766652 47999999999999999999999864 778888777
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 372 k 372 (1007)
T KOG4574|consen 372 K 372 (1007)
T ss_pred c
Confidence 6
No 145
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=83.03 E-value=0.75 Score=48.71 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=47.9
Q ss_pred hcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 77 VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 77 k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
+||.|..++|..+. .-...|-.||.|...++|.+|+..||+-.+.|++|...+..
T Consensus 92 kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred Hhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 99999998776652 34567889999999999999999999999999999987765
No 146
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=82.81 E-value=9.6 Score=35.79 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=48.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G-~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
...+.+...|+.++.++|..+.+.+- .|..++++++ ....+-.+.+.|.+...|......+||..++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD--GTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC--CCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444555556666667776666554 5667788775 2235566899999999999999999999986
No 147
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=81.64 E-value=6.7 Score=33.13 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=43.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 116 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~---G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~L 116 (769)
+..|+|.|+. .++..+|+.+|..| .....+..+-|. -|-|.|.+...|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4679999985 46678888999887 235577777773 5889999999999999864
No 148
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=81.61 E-value=1.1 Score=48.74 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...+++|||++.+.+.+.+...+|..+|.+..+.+.....+..++||+++.|...+.+..||.....+.+.+..+..+..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35789999999999999999999999998888777765567889999999999999999999943335666666555444
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 4
No 149
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.59 E-value=3.7 Score=41.97 Aligned_cols=61 Identities=18% Similarity=0.098 Sum_probs=45.6
Q ss_pred HHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEecchh
Q 004191 68 SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMVDQATRE 134 (769)
Q Consensus 68 e~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln--G~~I~GR~L~Vd~A~kk 134 (769)
...|+.+|..|+.+..|.+... -+=..|.|.+...|..|...|+ +..++|..|+|.++..-
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3689999999999998877653 2347899999999999999999 99999999999988544
No 150
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=81.51 E-value=12 Score=43.84 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCccccCCCCcchhhc
Q 004191 224 TNPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIR 261 (769)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~e~~~k~~~~~~~~d~~~ 261 (769)
.+|+|+.....|..++.+......+....++.++.+..
T Consensus 547 ~kpGpsnRsR~tksgsRG~ertvvmDkskg~pviSvKt 584 (940)
T KOG4661|consen 547 KKPGPSNRSRSTKSGSRGKERTVVMDKSKGDPVISVKT 584 (940)
T ss_pred cCCCccccccccccCCCccceeeeeccCCCCceeeecc
Confidence 35666666666777777777677777777777666554
No 151
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=79.54 E-value=1.1 Score=51.07 Aligned_cols=72 Identities=6% Similarity=-0.036 Sum_probs=57.3
Q ss_pred cEEEEcCCCCCCCH-HHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 55 TKVYVGKIAPTADS-DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 55 ~tLfVgNLp~~vte-~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
+.|-+.-+|+.... .+|...|.+||.|..|.+-+. --.|.|+|.+..+|-.|.. .++..|+|+.|+|-|-..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 44444555665544 599999999999999987543 2468999999999987877 899999999999998764
No 152
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=78.89 E-value=8.2 Score=33.25 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=38.0
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhhcCCe-----eEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 56 KVYVG-KIAPTADSDFVLSVLKVCGTV-----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 56 tLfVg-NLp~~vte~~Lr~lF~k~G~V-----~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
++||. +--..++..+|..+|...+.| -.+.+..+ |.||+.... .|..++..|++..+.|++|.|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 223357778888888866544 35555443 899988664 6888999999999999999997
Q ss_pred ec
Q 004191 130 QA 131 (769)
Q Consensus 130 ~A 131 (769)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 64
No 153
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=78.18 E-value=3.1 Score=30.41 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 004191 725 KASQMLELLQTILDDEAEMFVLKM 748 (769)
Q Consensus 725 ~p~~l~~~l~~~lde~a~~fv~~l 748 (769)
.-..|++++..+|+.+|+.||...
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~f 27 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGF 27 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346899999999999999999764
No 154
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=75.84 E-value=3.9 Score=47.58 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=41.6
Q ss_pred cCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC----CeEEEEEecc
Q 004191 78 CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELMVDQAT 132 (769)
Q Consensus 78 ~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~----GR~L~Vd~A~ 132 (769)
.|.-..+.++.|=.+....|||||-|.++..+..+..++||+.+. .+.+.+.||.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 344445556666445677899999999999999999999999864 4556667766
No 155
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=71.98 E-value=4.8 Score=42.86 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=53.1
Q ss_pred CCCCcEEEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDF-V--LSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~-L--r~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
.+....+|++|+-..+...- | ...|+.|..+...+++.+ .-+...+++|+.|........+-..-++..++-..|+
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR 171 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR 171 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCccee
Confidence 34456677777766665543 3 677887877777788776 3678889999999877776666665556666555544
Q ss_pred E
Q 004191 128 V 128 (769)
Q Consensus 128 V 128 (769)
+
T Consensus 172 ~ 172 (290)
T KOG0226|consen 172 L 172 (290)
T ss_pred e
Confidence 4
No 156
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=70.91 E-value=6.4 Score=45.92 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHh--hcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLK--VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 127 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~--k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln--G~~I~GR~L~ 127 (769)
...|.|++.-||..+..+.++.||. .|-.+.+|.+..+- -=||+|.+..+|+.|...|. -.+|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4468899999999999999999997 48899999887652 35899999999999988775 2446666655
Q ss_pred E
Q 004191 128 V 128 (769)
Q Consensus 128 V 128 (769)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 4
No 157
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=70.41 E-value=22 Score=32.66 Aligned_cols=74 Identities=14% Similarity=0.303 Sum_probs=55.9
Q ss_pred hhhhhhhhHHHHHHhhhCcchh--HHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 004191 689 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETG 762 (769)
Q Consensus 689 ~~~~~~pwi~kki~e~lG~ee~--~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~~lWrllife~~~~~~g 762 (769)
+.+-||-.|.+|...+=.+-|+ .+-+||+=.+....++..++.+|...+|.=...++...-....|..++...|
T Consensus 8 ~~~nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF~ale~Lq~G 83 (107)
T PF11517_consen 8 ITENLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAFFALEALQQG 83 (107)
T ss_dssp HHHHHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999888555554 5889999999999999999999999999777777777777777777777665
No 158
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=62.34 E-value=3.6 Score=49.76 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=21.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE-EecchhhHHHHHHHhhh
Q 004191 97 GFGFCEFESAEGVLRALRLLNKFNIDGQELMV-DQATREYLERYVDKKTE 145 (769)
Q Consensus 97 GfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V-d~A~kk~l~~~~~kk~~ 145 (769)
-||||.-...- -..+|..+|-. ++++ +.| ....+.+--+|.+.+..
T Consensus 159 tygfVD~dvff-Qls~~~g~hp~-vgD~-V~vea~Ynpsmpfkwnaqriq 205 (1194)
T KOG4246|consen 159 TYGFVDQDVFF-QLSKMQGLHPS-VGDA-VNVEADYNPSMPFKWNAQRIQ 205 (1194)
T ss_pred ccccccHHHHH-HHHHHhcCCCc-cccc-eeeecccCCCCCccccHHHHH
Confidence 47777533222 22233334332 3333 444 22334555677776654
No 159
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=61.87 E-value=2.4e+02 Score=34.34 Aligned_cols=10 Identities=50% Similarity=0.903 Sum_probs=5.3
Q ss_pred cccCCC-ChHH
Q 004191 553 LVPIDY-STEE 562 (769)
Q Consensus 553 lvp~~y-~~ee 562 (769)
+||=-| +++|
T Consensus 559 fVPhgyLSedE 569 (811)
T KOG4364|consen 559 FVPHGYLSEDE 569 (811)
T ss_pred ecCCccccccc
Confidence 566666 4444
No 160
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=61.80 E-value=77 Score=34.51 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=35.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCCcceEEEEeCCHH
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAE 107 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V-~~ikiv~d~~tGk~rGfgFVeF~s~e 107 (769)
.+-|||+|||.++.-.+|+..+...|.+ .++.+ ..+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 4669999999999999999999887743 33332 134567999996643
No 161
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.38 E-value=25 Score=40.35 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=57.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCcce-EEEEeCCHHHHHHHHHHhCCceeCC
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG 123 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G-~V~~ikiv~d~~tGk~rGf-gFVeF~s~e~A~~Al~~LnG~~I~G 123 (769)
.+.|+|-.+|-.++-.+|..|...|- .|..++++++ |.+..| ..|.|.+..+|......+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999888654 6888999985 444444 7899999999999999999999863
No 162
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.39 E-value=30 Score=40.84 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=54.2
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEeecCC----------CCC---------------------
Q 004191 51 EKPQTKVYVGKIAPT-ADSDFVLSVLKVC----GTVKSWKRAQYPS----------NGT--------------------- 94 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~-vte~~Lr~lF~k~----G~V~~ikiv~d~~----------tGk--------------------- 94 (769)
+...++|-|.||.|. +...+|.-+|+.| |.|.+|.|+.... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445788999999996 5666888888755 5888887754210 122
Q ss_pred ---------------Cc-ceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 95 ---------------PK-GFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 95 ---------------~r-GfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
.+ =||.|+|.+...|......+.|+.+.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 11 26889999999999999999999986
No 163
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=51.31 E-value=30 Score=40.17 Aligned_cols=24 Identities=4% Similarity=0.064 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhh
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKV 77 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k 77 (769)
..++|-.-=+-.++...|..+|..
T Consensus 306 ~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 306 CATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred cchhhhccCcceecHHHHHHHHHH
Confidence 344554333444666688888873
No 164
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=50.50 E-value=18 Score=43.19 Aligned_cols=63 Identities=14% Similarity=0.359 Sum_probs=52.8
Q ss_pred hhhhhhHHHHHHhhhCcchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004191 691 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 753 (769)
Q Consensus 691 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~~lWrlli 753 (769)
.+++--+.....+|||-.-+.++..|+..|........=+.+|.-||.++...||..||-.|.
T Consensus 22 ~k~k~~~kddl~~~~g~~t~~~~~~~f~~~~r~~~~~~ea~e~~~~~ed~~~~~~a~~~~~~~ 84 (681)
T KOG3702|consen 22 AKLKEMVKDDLKEYMGDYTDDILVEYFIVLLRNGRRKEEANELKIFLEDDSDSFVAWLWDHLA 84 (681)
T ss_pred hhhhhhhhhhHHhhcCCchhhhhhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhhhhhHH
Confidence 678888999999999998777777777777665555555559999999999999999999887
No 165
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=46.58 E-value=7.2 Score=33.58 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHH
Q 004191 724 VKASQMLELLQTILDDEAEMFVLKM 748 (769)
Q Consensus 724 ~~p~~l~~~l~~~lde~a~~fv~~l 748 (769)
.+-..||++|..||..+|+.||..+
T Consensus 39 ~~vD~lLDeID~vLE~NAeeFVr~f 63 (69)
T PF05639_consen 39 DDVDDLLDEIDSVLETNAEEFVRSF 63 (69)
T ss_dssp CCHHHHHHHHTTTSSSC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999754
No 166
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=44.94 E-value=19 Score=39.73 Aligned_cols=15 Identities=7% Similarity=0.069 Sum_probs=7.2
Q ss_pred EEEEecc-hhhHHHHH
Q 004191 126 LMVDQAT-REYLERYV 140 (769)
Q Consensus 126 L~Vd~A~-kk~l~~~~ 140 (769)
+.+.|.. +..|-.|-
T Consensus 163 mYiRYtqpp~dLw~Wy 178 (453)
T KOG2888|consen 163 MYIRYTQPPADLWDWY 178 (453)
T ss_pred eEEeecCChhHHHHHh
Confidence 4444444 44455554
No 167
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=43.51 E-value=1.1e+02 Score=26.27 Aligned_cols=55 Identities=9% Similarity=-0.002 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 65 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 65 ~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
.++-.+++..|..|+- .. |..++ | | -||.|.+..+|.+|....+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4566899999999973 22 22332 2 3 379999999999999999999988776654
No 168
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=37.85 E-value=35 Score=39.42 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=44.9
Q ss_pred hhhhhhHHHHHHhhhCcchhHHHHHHHHhhhcCC----CHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004191 691 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV----KASQMLELLQTILDDEAEMFVLKMWRMLI 753 (769)
Q Consensus 691 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~----~p~~l~~~l~~~lde~a~~fv~~lWrlli 753 (769)
+.|+-|...-..=+---.-..|..||+-.|+... =+..++.+|..||-+++..||.||+..|-
T Consensus 7 d~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~~ 73 (526)
T KOG2135|consen 7 DALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDALR 73 (526)
T ss_pred HHHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhhc
Confidence 4566666654333333333458899999997644 34567799999999999999999986654
No 169
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.65 E-value=30 Score=37.30 Aligned_cols=56 Identities=21% Similarity=0.458 Sum_probs=44.8
Q ss_pred HHHHHHhhhCcchhHHHHHHHHhhhcCCCHHHHHHHHHHh-hhHH--HHHHHHHHHHHH
Q 004191 697 ISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTI-LDDE--AEMFVLKMWRML 752 (769)
Q Consensus 697 i~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~-lde~--a~~fv~~lWrll 752 (769)
|+.....|||+.|+.|..-|++.-++..+|.++.+.|... |.+= ...||..||-.+
T Consensus 264 indllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~I 322 (334)
T KOG3938|consen 264 INDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAI 322 (334)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhh
Confidence 4455667999999999999999999999999888877766 5432 467999999765
No 170
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=35.64 E-value=91 Score=38.26 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=7.7
Q ss_pred HHHHHhhhCcch
Q 004191 698 SKKITEFLGEEE 709 (769)
Q Consensus 698 ~kki~e~lG~ee 709 (769)
.+-+++|+|+-.
T Consensus 696 f~~~~~y~Gesp 707 (830)
T KOG1923|consen 696 FEDVVEYFGESP 707 (830)
T ss_pred HHhHhHhhCCCC
Confidence 455677888554
No 171
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.27 E-value=78 Score=35.97 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=44.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHH
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~-V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~ 115 (769)
.+-|-|.++|......+|..+|..||. -..|+++-+. ++|..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 466778899988888899999999984 3456666663 899999999999999983
No 172
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=33.06 E-value=67 Score=28.96 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=33.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeC
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFE 104 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~ 104 (769)
..-|||||++..+.+.-...+...++.-.-+ ++.. +....||+|.++-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~--~~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAV-MVWS--DNNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEc--cCCCCCEEEEEeC
Confidence 4569999999999988777777655543333 3332 2238899999884
No 173
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=30.79 E-value=47 Score=33.44 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=46.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHH
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~ 115 (769)
......+++++++..++...+..+|..+|.+....+..........++.|+.+.....+..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcc
Confidence 45578899999999999999999999999997776655533334445555555555555555443
No 174
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=29.98 E-value=1.2e+02 Score=27.25 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=47.4
Q ss_pred hhhhhhhhHHHHHHhh--hCc---chhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHH
Q 004191 689 LHERMRPWISKKITEF--LGE---EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVL 746 (769)
Q Consensus 689 ~~~~~~pwi~kki~e~--lG~---ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~ 746 (769)
..+.|+|||..|+.|| ||. ..+.|=+|+++..-.+..|..|-+-+..||-=.+-.||.
T Consensus 5 ~~~~v~p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ 67 (87)
T PF13797_consen 5 WREQVEPALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKPNDYMN 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCHHHHHH
Confidence 3567999999999986 564 477899999999988888888888888888777777764
No 175
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=29.53 E-value=1e+02 Score=27.48 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=38.0
Q ss_pred HHHHHhhhCcchhHHHHHHHHhhhcC---CCHHHHHHHHHHhhhHHHHHHH
Q 004191 698 SKKITEFLGEEETTLVDYIVSSTQDH---VKASQMLELLQTILDDEAEMFV 745 (769)
Q Consensus 698 ~kki~e~lG~ee~~lv~~i~~~l~~~---~~p~~l~~~l~~~lde~a~~fv 745 (769)
..||..+|| .|++.-++++..|+.. .+-..|+..|.++|..++..=+
T Consensus 9 ~~Kvd~iL~-~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~L 58 (80)
T cd07354 9 SRKVDAILG-DDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKL 58 (80)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHH
Confidence 578999999 5888999999999753 3677899999999997776433
No 176
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=28.63 E-value=14 Score=38.69 Aligned_cols=75 Identities=16% Similarity=0.333 Sum_probs=61.6
Q ss_pred CCCcEEEEcC----CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 52 KPQTKVYVGK----IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 52 ~~~~tLfVgN----Lp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
....++++|| |...++...+...|+..|++..+.+.++. +|.++.|+|++|.-....-.++..+.+..+--+++.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 3467888998 78888999999999999999999998874 689999999999988888888887777665544433
No 177
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=27.44 E-value=1.7e+02 Score=24.79 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=40.6
Q ss_pred hhHHHHHHhhhCcchhHHHHHHHHhhhcCCCHHHHHHH-HHHhhhHHHHHHHHHHHH
Q 004191 695 PWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDEAEMFVLKMWR 750 (769)
Q Consensus 695 pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~-l~~~lde~a~~fv~~lWr 750 (769)
+++..-+.-++....+.+..++-..+....+|..++.+ |.++|.+ |..+|.
T Consensus 3 ~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~-----iG~~w~ 54 (79)
T PF02607_consen 3 ELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE-----IGELWE 54 (79)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHHHh
Confidence 56777777788888888999999999887899999987 8888876 566665
No 178
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=26.85 E-value=11 Score=44.11 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=53.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
.|+|||.||+++++-..|..+...+-.+..+.+.....-.+..-+++|+|.-.-...-|+.+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 578999999999999999999888777777666443222344567999998888888888888887764
No 179
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=26.79 E-value=51 Score=33.73 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=52.9
Q ss_pred CCcEEEEcCCCCCCCHH-----HHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 004191 53 PQTKVYVGKIAPTADSD-----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 126 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~-----~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR-~L 126 (769)
-.+++++.+|+..+-.. ....+|..|.....+.+++. .++.-|.|.++..|..|...+++..|.|+ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 35667788887654332 44566766666554444332 24556799999999999999999999988 77
Q ss_pred EEEecchh
Q 004191 127 MVDQATRE 134 (769)
Q Consensus 127 ~Vd~A~kk 134 (769)
..-++..-
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 77666644
No 180
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=25.57 E-value=5.3 Score=45.13 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=63.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..+.+-|.|||+...+..|-.|+..||.+..|-.+. +..-....-|+|...+.+..||..|||..|.+..+.|.|-.
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 356788999999999999999999999998876532 11222445688999999999999999999999999998765
No 181
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=25.06 E-value=66 Score=39.63 Aligned_cols=12 Identities=8% Similarity=0.407 Sum_probs=6.8
Q ss_pred CCCcEEEEcCCC
Q 004191 52 KPQTKVYVGKIA 63 (769)
Q Consensus 52 ~~~~tLfVgNLp 63 (769)
.....+|+|++.
T Consensus 143 ~~~qR~f~gvvt 154 (1194)
T KOG4246|consen 143 NEPQRRFAGVVT 154 (1194)
T ss_pred CCcceeeehhhh
Confidence 334566676554
No 182
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=23.76 E-value=2.4e+02 Score=24.97 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=44.5
Q ss_pred hhhHHHHHHhhhCcchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004191 694 RPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 753 (769)
Q Consensus 694 ~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~~lWrlli 753 (769)
.+=+..++..+|-..|-.-+-+.++....+.+-..|+-.|..+||.-|.--+...=|.||
T Consensus 5 ~r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lI 64 (78)
T cd07347 5 AREFSQQVDHLLTDAEREQVTRALERYHQERNVDDLVRDLYLVLDTPAKLPLLQFLRQVI 64 (78)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhHHHHHHHHHHHc
Confidence 445677888888666655555555666666699999999999999999866555555555
No 183
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.19 E-value=1e+02 Score=26.76 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=44.2
Q ss_pred HHHHHHHhhcC-CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 69 DFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 69 ~~Lr~lF~k~G-~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.+|..-|..+| .+..++.+..+.++.+...-||+.....+... .|+=..|+|+.|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 36778888888 67888888887777777788888766433322 355566789999887655
No 184
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=20.86 E-value=1.4e+02 Score=25.50 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=44.9
Q ss_pred HHHHHHHhhcC-CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 69 DFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 69 ~~Lr~lF~k~G-~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
++|.+-|...| .|..+..+..+.++.+.-.-||++....+. ...|+=..|+|..|.|....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~---k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN---KEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc---cceeehHhhCCeEEEEecCCC
Confidence 35677778778 678888888776788888889988765542 223555567888899887654
No 185
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=20.71 E-value=3.4e+02 Score=24.70 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhhhhcccc
Q 004191 728 QMLELLQTILDDE--AEMFVLKMWRMLIFEIKKVETGLAL 765 (769)
Q Consensus 728 ~l~~~l~~~lde~--a~~fv~~lWrllife~~~~~~gl~~ 765 (769)
+++..+.....+. -..|+..||+++|=|+.+.+..++.
T Consensus 52 ~vl~~~~~~a~~~gl~p~~~e~i~~~i~~esir~q~~~~~ 91 (94)
T TIGR01795 52 YQIARLRRLAIDAGLDPEFAEKFLNFIVTEVIKHHERIAD 91 (94)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444433322 4679999999999999988876654
No 186
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=20.64 E-value=64 Score=31.18 Aligned_cols=10 Identities=50% Similarity=0.837 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 004191 354 REREREKERQ 363 (769)
Q Consensus 354 RER~re~eR~ 363 (769)
||..+|+.|+
T Consensus 27 RetSrERSRd 36 (146)
T PF11671_consen 27 RETSRERSRD 36 (146)
T ss_pred HHhhhhhhhh
Confidence 3333333333
Done!