Query 004191
Match_columns 769
No_of_seqs 440 out of 1773
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:11:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v53_A RNA-binding protein 25; 100.0 1.4E-37 4.6E-42 286.0 10.4 106 659-764 13-118 (119)
2 1mp1_A Ser/Arg-related nuclear 99.9 1.2E-22 4E-27 185.4 8.2 92 669-765 5-98 (111)
3 1x4q_A U4/U6 small nuclear rib 99.8 6.3E-20 2.2E-24 162.9 7.2 74 684-757 8-82 (92)
4 3pgw_S U1-70K; protein-RNA com 99.8 1.3E-19 4.5E-24 203.6 10.7 88 52-139 100-187 (437)
5 4fxv_A ELAV-like protein 1; RN 99.7 2.5E-17 8.5E-22 148.0 11.5 82 52-133 17-98 (99)
6 3n9u_C Cleavage and polyadenyl 99.7 7.4E-17 2.5E-21 156.9 13.0 93 52-144 53-147 (156)
7 3s8s_A Histone-lysine N-methyl 99.7 2.3E-16 8E-21 144.5 12.0 83 52-134 4-86 (110)
8 2khc_A Testis-specific RNP-typ 99.7 6E-16 2.1E-20 142.0 14.3 82 51-132 37-118 (118)
9 1u6f_A Tcubp1, RNA-binding pro 99.7 1.1E-15 3.6E-20 144.4 15.2 85 50-134 38-122 (139)
10 3bs9_A Nucleolysin TIA-1 isofo 99.6 6.6E-16 2.3E-20 133.6 11.1 83 52-134 4-86 (87)
11 3md1_A Nuclear and cytoplasmic 99.6 7.4E-16 2.5E-20 132.2 11.0 81 54-134 1-81 (83)
12 2lxi_A RNA-binding protein 10; 99.6 2.2E-16 7.4E-21 139.5 7.3 81 54-134 1-83 (91)
13 1x5u_A Splicing factor 3B subu 99.6 1.3E-15 4.6E-20 136.7 11.8 83 52-134 13-95 (105)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.2E-15 4.1E-20 131.4 11.0 81 52-132 5-85 (85)
15 2la6_A RNA-binding protein FUS 99.6 1.3E-15 4.3E-20 135.7 11.4 81 52-132 11-99 (99)
16 2e5h_A Zinc finger CCHC-type a 99.6 2.2E-15 7.4E-20 132.4 12.7 81 52-132 14-94 (94)
17 2cpz_A CUG triplet repeat RNA- 99.6 2.2E-15 7.5E-20 137.8 13.1 83 52-134 23-105 (115)
18 2cq4_A RNA binding motif prote 99.6 7.9E-16 2.7E-20 140.5 10.1 82 52-134 23-104 (114)
19 2dnz_A Probable RNA-binding pr 99.6 1.2E-15 4.2E-20 134.3 10.9 83 52-134 3-85 (95)
20 2x1f_A MRNA 3'-END-processing 99.6 1.5E-15 5E-20 134.5 11.3 82 53-134 1-82 (96)
21 2jrs_A RNA-binding protein 39; 99.6 1.2E-15 4.2E-20 138.8 10.9 85 50-134 22-106 (108)
22 3ns6_A Eukaryotic translation 99.6 4.3E-16 1.5E-20 139.7 7.5 82 53-134 5-93 (100)
23 2dgs_A DAZ-associated protein 99.6 2.1E-15 7.2E-20 134.1 11.4 83 51-134 7-89 (99)
24 2cqc_A Arginine/serine-rich sp 99.6 2.7E-15 9.3E-20 131.9 11.9 81 52-132 13-93 (95)
25 2cq0_A Eukaryotic translation 99.6 1.9E-15 6.6E-20 135.3 11.2 84 51-134 12-95 (103)
26 1whw_A Hypothetical protein ri 99.6 2.4E-15 8.3E-20 133.5 11.7 83 52-134 6-88 (99)
27 1oo0_B CG8781-PA, drosophila Y 99.6 1.8E-15 6.3E-20 137.1 11.0 83 52-134 24-106 (110)
28 2dgo_A Cytotoxic granule-assoc 99.6 3.3E-15 1.1E-19 136.4 12.8 84 51-134 12-95 (115)
29 4f25_A Polyadenylate-binding p 99.6 1.5E-15 5.2E-20 139.5 10.5 80 53-134 4-83 (115)
30 1p27_B RNA-binding protein 8A; 99.6 1.6E-15 5.5E-20 136.4 10.3 83 52-134 21-103 (106)
31 3p5t_L Cleavage and polyadenyl 99.6 4.9E-16 1.7E-20 136.3 6.5 80 55-134 2-83 (90)
32 1x5t_A Splicing factor 3B subu 99.6 1.6E-15 5.5E-20 133.8 9.8 83 52-134 3-86 (96)
33 2lkz_A RNA-binding protein 5; 99.6 1.1E-15 3.8E-20 136.6 8.9 81 52-132 7-93 (95)
34 2dnm_A SRP46 splicing factor; 99.6 1.7E-15 5.9E-20 135.6 9.9 84 51-134 10-93 (103)
35 1x4h_A RNA-binding protein 28; 99.6 3E-15 1E-19 135.6 11.5 83 52-134 13-101 (111)
36 2cph_A RNA binding motif prote 99.6 2.9E-15 9.9E-20 134.8 11.3 84 51-134 12-97 (107)
37 2do4_A Squamous cell carcinoma 99.6 4.8E-15 1.6E-19 132.0 12.3 82 52-134 15-96 (100)
38 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.1E-15 7.3E-20 134.6 10.1 83 52-134 10-92 (102)
39 1x5s_A Cold-inducible RNA-bind 99.6 2.7E-15 9.1E-20 134.0 10.4 83 52-134 10-92 (102)
40 3s7r_A Heterogeneous nuclear r 99.6 4.2E-15 1.4E-19 128.9 11.2 80 51-131 8-87 (87)
41 2dgp_A Bruno-like 4, RNA bindi 99.6 2.7E-15 9.3E-20 134.9 10.3 84 51-134 10-96 (106)
42 3ulh_A THO complex subunit 4; 99.6 5.1E-15 1.8E-19 133.3 11.6 80 52-132 27-106 (107)
43 2cpe_A RNA-binding protein EWS 99.6 4.4E-15 1.5E-19 135.2 11.2 84 51-134 12-103 (113)
44 2j76_E EIF-4B, EIF4B, eukaryot 99.6 8.7E-16 3E-20 137.4 6.4 81 52-134 17-98 (100)
45 2div_A TRNA selenocysteine ass 99.6 3.6E-15 1.2E-19 132.4 10.1 83 52-134 7-94 (99)
46 2ywk_A Putative RNA-binding pr 99.6 4.2E-15 1.4E-19 130.9 10.4 80 52-132 14-93 (95)
47 2dnh_A Bruno-like 5, RNA bindi 99.6 6.4E-15 2.2E-19 132.2 11.7 82 52-134 13-97 (105)
48 2cpf_A RNA binding motif prote 99.6 3.4E-15 1.1E-19 132.4 9.7 83 52-134 3-88 (98)
49 2dng_A Eukaryotic translation 99.6 6.5E-15 2.2E-19 132.0 11.7 81 52-134 13-93 (103)
50 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.1E-14 3.9E-19 130.3 13.1 82 51-134 12-93 (103)
51 3ex7_B RNA-binding protein 8A; 99.6 3.7E-15 1.3E-19 138.3 10.2 83 52-134 20-102 (126)
52 3ucg_A Polyadenylate-binding p 99.6 5.5E-15 1.9E-19 128.4 10.6 80 54-134 6-85 (89)
53 4a8x_A RNA-binding protein wit 99.6 4.4E-15 1.5E-19 128.5 9.7 81 53-133 3-84 (88)
54 1wi8_A EIF-4B, eukaryotic tran 99.6 6.9E-15 2.4E-19 132.1 11.3 81 52-134 13-94 (104)
55 2kt5_A RNA and export factor-b 99.6 2.3E-14 7.9E-19 132.8 15.1 83 51-134 32-114 (124)
56 2err_A Ataxin-2-binding protei 99.6 4.5E-15 1.5E-19 135.1 9.8 83 51-135 26-108 (109)
57 2d9p_A Polyadenylate-binding p 99.6 6.5E-15 2.2E-19 131.9 10.5 82 51-134 12-93 (103)
58 2kxn_B Transformer-2 protein h 99.6 4.4E-15 1.5E-19 139.7 9.7 84 51-134 43-126 (129)
59 2cqp_A RNA-binding protein 12; 99.6 4.9E-15 1.7E-19 131.3 9.4 82 52-133 13-94 (98)
60 2rs2_A Musashi-1, RNA-binding 99.6 6E-15 2.1E-19 134.4 10.1 83 51-134 22-104 (109)
61 2cq3_A RNA-binding protein 9; 99.6 1.9E-14 6.6E-19 128.8 13.2 82 51-134 12-93 (103)
62 2fy1_A RNA-binding motif prote 99.6 7.4E-15 2.5E-19 135.3 10.7 82 52-134 5-86 (116)
63 2cqg_A TDP-43, TAR DNA-binding 99.6 1.7E-14 5.7E-19 129.2 12.6 82 51-134 12-93 (103)
64 1x4b_A Heterogeneous nuclear r 99.6 6.2E-15 2.1E-19 135.0 10.0 82 52-134 25-106 (116)
65 1rk8_A CG8781-PA, CG8781-PA pr 99.6 8.7E-15 3E-19 142.7 11.5 83 52-134 70-152 (165)
66 2m2b_A RNA-binding protein 10; 99.6 2.4E-15 8.1E-20 141.2 7.3 82 52-134 21-108 (131)
67 2cqd_A RNA-binding region cont 99.6 1.5E-14 5.1E-19 132.4 12.4 83 51-134 14-96 (116)
68 2cpy_A RNA-binding protein 12; 99.6 9.3E-15 3.2E-19 133.9 11.0 86 52-139 13-99 (114)
69 1s79_A Lupus LA protein; RRM, 99.6 3.1E-15 1E-19 135.5 7.6 79 52-132 9-87 (103)
70 2dhg_A TRNA selenocysteine ass 99.6 4.9E-15 1.7E-19 132.7 8.8 82 52-134 7-90 (104)
71 2dh8_A DAZ-associated protein 99.6 7.1E-15 2.4E-19 132.1 9.8 83 51-134 13-95 (105)
72 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.1E-14 1.1E-18 133.8 14.6 81 51-131 60-140 (140)
73 1p1t_A Cleavage stimulation fa 99.6 6.5E-15 2.2E-19 131.8 9.5 84 53-136 7-90 (104)
74 1x4e_A RNA binding motif, sing 99.6 1.6E-15 5.6E-20 130.9 5.3 81 52-132 3-83 (85)
75 2dgv_A HnRNP M, heterogeneous 99.6 8.6E-15 2.9E-19 128.1 9.9 81 52-134 6-86 (92)
76 1wel_A RNA-binding protein 12; 99.6 7.1E-15 2.4E-19 136.6 9.8 86 52-138 23-108 (124)
77 2db1_A Heterogeneous nuclear r 99.6 1.1E-14 3.8E-19 134.6 11.0 85 51-137 14-101 (118)
78 2nlw_A Eukaryotic translation 99.6 7.3E-15 2.5E-19 132.7 9.4 79 52-132 13-98 (105)
79 2dgw_A Probable RNA-binding pr 99.6 1.7E-14 5.8E-19 126.3 11.4 81 51-134 7-87 (91)
80 2ek1_A RNA-binding protein 12; 99.6 4.6E-15 1.6E-19 130.6 7.8 81 52-132 13-93 (95)
81 2mss_A Protein (musashi1); RNA 99.6 4.3E-15 1.5E-19 125.2 7.2 75 56-131 1-75 (75)
82 2dgx_A KIAA0430 protein; RRM d 99.6 1.7E-14 5.7E-19 128.1 11.3 80 52-134 7-90 (96)
83 3q2s_C Cleavage and polyadenyl 99.6 6.8E-15 2.3E-19 151.6 9.9 88 53-140 67-156 (229)
84 2do0_A HnRNP M, heterogeneous 99.6 2.1E-14 7.2E-19 130.7 12.0 82 51-133 12-93 (114)
85 2kn4_A Immunoglobulin G-bindin 99.5 1.8E-14 6.1E-19 138.7 11.8 84 51-134 67-150 (158)
86 2jwn_A Embryonic polyadenylate 99.5 9.9E-15 3.4E-19 135.0 9.2 80 53-133 35-114 (124)
87 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.4E-14 8.2E-19 137.9 12.0 82 52-133 37-118 (156)
88 2a3j_A U1 small nuclear ribonu 99.5 1.5E-14 5.2E-19 136.0 10.3 80 52-134 27-110 (127)
89 1x4a_A Splicing factor, argini 99.5 4.4E-14 1.5E-18 127.8 12.9 80 52-134 20-99 (109)
90 2dis_A Unnamed protein product 99.5 1.5E-14 5.1E-19 130.7 9.7 83 52-134 6-92 (109)
91 1uaw_A Mouse-musashi-1; RNP-ty 99.5 5.3E-15 1.8E-19 125.0 6.1 77 55-132 1-77 (77)
92 2ki2_A SS-DNA binding protein 99.5 3.1E-15 1.1E-19 130.5 4.8 81 55-136 2-82 (90)
93 1x5o_A RNA binding motif, sing 99.5 4.9E-14 1.7E-18 128.4 12.4 83 51-134 22-112 (114)
94 2wbr_A GW182, gawky, LD47780P; 99.5 3.9E-14 1.3E-18 124.8 11.2 81 53-139 6-86 (89)
95 2lmi_A GRSF-1, G-rich sequence 99.5 1E-14 3.5E-19 132.2 7.5 85 51-137 8-95 (107)
96 1fj7_A Nucleolin RBD1, protein 99.5 3.8E-15 1.3E-19 133.0 4.5 81 52-134 15-95 (101)
97 1wg5_A Heterogeneous nuclear r 99.5 2.5E-14 8.4E-19 129.0 9.8 81 52-134 13-94 (104)
98 2cpi_A CCR4-NOT transcription 99.5 2.3E-14 7.9E-19 130.7 9.7 83 53-135 14-102 (111)
99 1sjq_A Polypyrimidine tract-bi 99.5 2E-14 6.7E-19 131.1 9.2 78 52-135 14-93 (105)
100 3lqv_A PRE-mRNA branch site pr 99.5 3.9E-14 1.3E-18 129.3 10.9 80 52-134 6-85 (115)
101 2cpx_A Hypothetical protein FL 99.5 1.5E-14 5.1E-19 131.9 8.0 83 52-134 23-105 (115)
102 2la4_A Nuclear and cytoplasmic 99.5 1.6E-14 5.3E-19 128.9 7.8 76 52-133 25-100 (101)
103 1nu4_A U1A RNA binding domain; 99.5 1.7E-14 5.8E-19 127.4 7.9 81 51-134 5-89 (97)
104 2krb_A Eukaryotic translation 99.5 1.2E-14 4.1E-19 124.7 6.5 74 54-129 1-81 (81)
105 2cq1_A PTB-like protein L; RRM 99.5 6.1E-14 2.1E-18 126.7 11.4 78 51-134 12-91 (101)
106 2hgl_A HNRPF protein, heteroge 99.5 3E-14 1E-18 135.6 9.4 85 51-137 41-128 (136)
107 1x4c_A Splicing factor, argini 99.5 1E-13 3.5E-18 125.6 12.2 76 52-134 13-93 (108)
108 2fc9_A NCL protein; structure 99.5 7.3E-14 2.5E-18 124.5 10.9 80 51-134 12-91 (101)
109 2xnq_A Nuclear polyadenylated 99.5 8.2E-14 2.8E-18 124.2 11.2 76 51-134 19-95 (97)
110 2fc8_A NCL protein; structure 99.5 6.1E-14 2.1E-18 125.1 10.4 81 51-134 12-92 (102)
111 2lea_A Serine/arginine-rich sp 99.5 1.8E-14 6.1E-19 136.5 7.1 84 51-134 44-127 (135)
112 1iqt_A AUF1, heterogeneous nuc 99.5 1.5E-14 5E-19 121.8 5.8 75 56-131 1-75 (75)
113 2jvo_A Nucleolar protein 3; nu 99.5 6.5E-14 2.2E-18 127.5 10.4 76 51-134 28-103 (108)
114 2f3j_A RNA and export factor b 99.5 1.7E-13 5.8E-18 135.8 14.0 84 51-135 85-168 (177)
115 2dnn_A RNA-binding protein 12; 99.5 9.1E-14 3.1E-18 127.3 10.5 79 53-134 15-93 (109)
116 3r27_A HnRNP L, heterogeneous 99.5 7.7E-14 2.6E-18 126.1 9.8 78 52-135 19-98 (100)
117 2j8a_A Histone-lysine N-methyl 99.5 8E-14 2.7E-18 130.9 10.2 82 55-136 3-98 (136)
118 3pgw_A U1-A; protein-RNA compl 99.5 3.2E-13 1.1E-17 141.3 16.1 77 51-132 204-281 (282)
119 2e5j_A Methenyltetrahydrofolat 99.5 1E-13 3.5E-18 122.9 10.4 78 52-134 17-94 (97)
120 1wez_A HnRNP H', FTP-3, hetero 99.5 3.7E-14 1.3E-18 127.9 7.5 79 52-133 13-91 (102)
121 2xs2_A Deleted in azoospermia- 99.5 2.4E-14 8.1E-19 128.0 6.1 80 52-134 7-86 (102)
122 4f02_A Polyadenylate-binding p 99.5 1E-13 3.5E-18 140.1 11.4 82 53-134 14-95 (213)
123 2dnq_A RNA-binding protein 4B; 99.5 1.3E-13 4.3E-18 120.6 10.5 76 51-134 5-80 (90)
124 1x4g_A Nucleolysin TIAR; struc 99.5 1.3E-13 4.3E-18 125.0 10.5 78 51-134 22-99 (109)
125 1why_A Hypothetical protein ri 99.5 2E-13 6.7E-18 121.0 11.3 77 52-134 15-93 (97)
126 3md3_A Nuclear and cytoplasmic 99.5 2.3E-13 8E-18 129.7 12.7 82 51-132 84-165 (166)
127 2ytc_A PRE-mRNA-splicing facto 99.5 1.8E-13 6.1E-18 117.9 10.6 76 51-132 9-85 (85)
128 1fjc_A Nucleolin RBD2, protein 99.5 4.5E-14 1.5E-18 124.6 6.8 79 51-134 13-91 (96)
129 2jvr_A Nucleolar protein 3; RN 99.5 1.4E-13 4.8E-18 126.5 10.1 78 53-134 27-105 (111)
130 1x4d_A Matrin 3; structural ge 99.5 9.7E-14 3.3E-18 125.8 8.7 76 52-133 13-91 (102)
131 2ad9_A Polypyrimidine tract-bi 99.5 9.7E-14 3.3E-18 129.2 8.8 78 52-135 29-108 (119)
132 2cpj_A Non-POU domain-containi 99.5 1.7E-13 5.8E-18 121.9 9.9 77 52-134 13-89 (99)
133 2dgt_A RNA-binding protein 30; 99.5 3E-13 1E-17 118.7 11.3 76 51-134 7-82 (92)
134 3egn_A RNA-binding protein 40; 99.5 3.6E-14 1.2E-18 134.8 5.6 84 51-134 42-130 (143)
135 2e44_A Insulin-like growth fac 99.5 1.6E-13 5.3E-18 121.1 9.3 79 52-134 13-92 (96)
136 1wex_A Hypothetical protein (r 99.5 2E-13 6.8E-18 123.9 9.9 77 52-134 13-91 (104)
137 2lcw_A RNA-binding protein FUS 99.2 7.1E-15 2.4E-19 134.7 0.0 83 52-134 5-95 (116)
138 2i2y_A Fusion protein consists 99.4 2.3E-13 7.8E-18 130.2 10.3 79 51-134 70-148 (150)
139 2hvz_A Splicing factor, argini 99.4 1E-13 3.5E-18 123.6 7.4 75 55-134 1-75 (101)
140 2cpd_A Apobec-1 stimulating pr 99.4 6.5E-13 2.2E-17 118.1 12.4 75 52-134 13-89 (99)
141 1fxl_A Paraneoplastic encephal 99.4 3.5E-13 1.2E-17 128.5 11.4 81 54-134 2-82 (167)
142 1wf1_A RNA-binding protein RAL 99.4 4E-13 1.4E-17 121.8 11.2 74 52-133 25-99 (110)
143 1whx_A Hypothetical protein ri 99.4 1.8E-13 6.2E-18 125.0 8.8 78 53-136 9-86 (111)
144 2g4b_A Splicing factor U2AF 65 99.4 3.6E-13 1.2E-17 129.7 11.1 81 52-132 92-172 (172)
145 2dnp_A RNA-binding protein 14; 99.4 4.1E-13 1.4E-17 117.3 10.4 76 51-134 6-81 (90)
146 1b7f_A Protein (SXL-lethal pro 99.4 3.1E-13 1E-17 129.5 10.4 82 53-134 2-83 (168)
147 2dha_A FLJ20171 protein; RRM d 99.4 1.9E-13 6.5E-18 127.9 8.6 86 52-139 21-110 (123)
148 2dgu_A Heterogeneous nuclear r 99.4 5.9E-13 2E-17 119.3 10.9 75 52-134 9-83 (103)
149 2cqh_A IGF-II mRNA-binding pro 99.4 2.8E-13 9.6E-18 118.9 8.1 76 52-134 6-83 (93)
150 2kvi_A Nuclear polyadenylated 99.4 2.6E-13 9E-18 120.2 8.0 76 51-134 7-83 (96)
151 2hgm_A HNRPF protein, heteroge 99.4 2.4E-13 8.1E-18 127.9 8.0 81 52-135 40-122 (126)
152 1x4f_A Matrin 3; structural ge 99.4 3.3E-13 1.1E-17 124.4 8.7 78 51-134 22-102 (112)
153 2e5g_A U6 snRNA-specific termi 99.4 4.9E-13 1.7E-17 117.9 9.1 76 53-134 7-82 (94)
154 2yh0_A Splicing factor U2AF 65 99.4 1.3E-12 4.6E-17 128.6 13.0 83 52-134 112-194 (198)
155 1l3k_A Heterogeneous nuclear r 99.4 6.8E-13 2.3E-17 130.5 10.7 82 52-134 11-92 (196)
156 2qfj_A FBP-interacting repress 99.4 6.5E-13 2.2E-17 132.6 10.6 83 52-134 123-205 (216)
157 1x5p_A Negative elongation fac 99.4 1.7E-12 5.7E-17 115.1 11.9 75 52-134 13-87 (97)
158 2cjk_A Nuclear polyadenylated 99.4 3.4E-13 1.2E-17 129.3 7.7 81 53-134 86-166 (167)
159 1wg1_A KIAA1579 protein, homol 99.4 5.6E-13 1.9E-17 116.2 8.2 75 53-134 4-78 (88)
160 4f02_A Polyadenylate-binding p 99.4 9.5E-13 3.3E-17 133.0 10.7 80 53-134 102-181 (213)
161 1l3k_A Heterogeneous nuclear r 99.4 1.3E-12 4.3E-17 128.6 10.9 82 52-134 102-183 (196)
162 3d2w_A TAR DNA-binding protein 99.4 1.4E-12 4.8E-17 114.6 9.8 75 51-134 8-84 (89)
163 2hgn_A Heterogeneous nuclear r 99.4 2E-13 6.9E-18 130.4 4.5 80 52-134 44-123 (139)
164 2dnl_A Cytoplasmic polyadenyla 99.4 1E-12 3.5E-17 120.3 8.5 78 52-132 6-86 (114)
165 3beg_B Splicing factor, argini 99.4 7E-13 2.4E-17 121.8 7.3 73 53-132 15-92 (115)
166 3md3_A Nuclear and cytoplasmic 99.4 1.5E-12 5.2E-17 124.0 9.7 79 55-134 1-79 (166)
167 1b7f_A Protein (SXL-lethal pro 99.4 2.6E-12 8.9E-17 123.0 11.3 80 52-131 87-168 (168)
168 2diu_A KIAA0430 protein; struc 99.3 2E-12 6.9E-17 115.1 9.1 70 54-133 8-83 (96)
169 2qfj_A FBP-interacting repress 99.3 1.7E-12 5.9E-17 129.6 9.8 82 53-134 27-108 (216)
170 2hzc_A Splicing factor U2AF 65 99.3 2.4E-12 8.3E-17 111.1 9.0 72 52-130 4-86 (87)
171 1fxl_A Paraneoplastic encephal 99.3 2.9E-12 9.8E-17 122.2 10.4 80 52-131 86-167 (167)
172 1sjr_A Polypyrimidine tract-bi 99.3 2.5E-12 8.7E-17 125.9 10.1 79 52-134 44-124 (164)
173 2cq2_A Hypothetical protein LO 99.3 2.4E-12 8.3E-17 118.9 9.1 76 52-133 23-105 (114)
174 3zzy_A Polypyrimidine tract-bi 99.3 3.6E-12 1.2E-16 120.4 10.3 79 52-135 26-107 (130)
175 3tyt_A Heterogeneous nuclear r 99.3 3.2E-12 1.1E-16 129.3 10.6 78 52-134 2-80 (205)
176 2cjk_A Nuclear polyadenylated 99.3 2.4E-12 8.3E-17 123.3 8.6 80 53-134 2-81 (167)
177 2pe8_A Splicing factor 45; RRM 99.3 1.1E-11 3.9E-16 112.5 11.8 82 52-133 6-93 (105)
178 3nmr_A Cugbp ELAV-like family 99.3 4.5E-12 1.5E-16 122.0 9.6 79 52-131 93-174 (175)
179 3nmr_A Cugbp ELAV-like family 99.3 5.2E-12 1.8E-16 121.5 10.0 81 53-133 2-87 (175)
180 2bz2_A Negative elongation fac 99.3 4.7E-12 1.6E-16 117.7 9.1 75 52-134 37-111 (121)
181 2e5i_A Heterogeneous nuclear r 99.3 8.1E-12 2.8E-16 117.1 10.6 76 54-135 25-103 (124)
182 3pgw_A U1-A; protein-RNA compl 99.3 7.6E-12 2.6E-16 130.9 11.4 81 51-134 6-90 (282)
183 1fje_B Nucleolin RBD12, protei 99.3 6.2E-12 2.1E-16 121.7 9.9 78 52-134 97-174 (175)
184 1wf0_A TDP-43, TAR DNA-binding 99.3 3E-12 1E-16 111.3 6.4 76 52-134 3-78 (88)
185 2adc_A Polypyrimidine tract-bi 99.3 6.7E-12 2.3E-16 128.2 9.7 78 52-134 32-110 (229)
186 2voo_A Lupus LA protein; RNA-b 99.3 9.5E-12 3.2E-16 124.8 10.5 77 54-132 109-185 (193)
187 2ghp_A U4/U6 snRNA-associated 99.3 7.1E-12 2.4E-16 131.7 9.9 83 51-134 207-291 (292)
188 3smz_A Protein raver-1, ribonu 99.3 2.1E-11 7.1E-16 127.7 12.1 82 53-134 94-175 (284)
189 3smz_A Protein raver-1, ribonu 99.2 2.2E-11 7.5E-16 127.5 10.7 85 51-136 181-266 (284)
190 1fje_B Nucleolin RBD12, protei 99.2 6E-12 2.1E-16 121.8 4.6 82 51-134 10-91 (175)
191 3u1l_A PRE-mRNA-splicing facto 99.2 2.3E-11 7.7E-16 126.2 8.5 78 51-134 131-229 (240)
192 1qm9_A Polypyrimidine tract-bi 99.2 2.6E-11 9E-16 120.0 7.5 76 54-134 3-79 (198)
193 3sde_A Paraspeckle component 1 99.2 8.3E-11 2.8E-15 122.5 11.4 76 52-133 20-95 (261)
194 2dit_A HIV TAT specific factor 99.2 1.2E-10 4E-15 106.3 10.4 79 52-134 13-102 (112)
195 3v4m_A Splicing factor U2AF 65 99.1 1.2E-10 4.3E-15 105.6 10.2 83 52-134 3-97 (105)
196 1qm9_A Polypyrimidine tract-bi 99.1 9.2E-11 3.1E-15 116.1 10.1 78 52-134 118-197 (198)
197 3tyt_A Heterogeneous nuclear r 99.1 6.4E-11 2.2E-15 119.7 8.8 78 52-131 121-204 (205)
198 2ghp_A U4/U6 snRNA-associated 99.1 9.4E-11 3.2E-15 123.2 9.7 81 53-134 116-197 (292)
199 3sde_A Paraspeckle component 1 99.1 1.4E-10 4.7E-15 120.8 10.2 81 52-133 94-178 (261)
200 1jmt_A Splicing factor U2AF 35 99.1 3.9E-11 1.3E-15 108.7 5.0 72 59-131 20-103 (104)
201 2adc_A Polypyrimidine tract-bi 99.1 1.9E-10 6.6E-15 117.3 10.0 78 52-134 149-228 (229)
202 2yh0_A Splicing factor U2AF 65 99.1 2.3E-10 7.9E-15 112.5 8.9 74 53-133 3-87 (198)
203 3ue2_A Poly(U)-binding-splicin 99.0 5.2E-10 1.8E-14 103.8 9.7 81 53-133 19-108 (118)
204 2g4b_A Splicing factor U2AF 65 99.0 3.9E-10 1.3E-14 108.3 9.3 73 53-132 3-86 (172)
205 3tht_A Alkylated DNA repair pr 98.9 2.5E-09 8.6E-14 116.4 9.8 76 51-132 15-97 (345)
206 3s6e_A RNA-binding protein 39; 98.9 1.4E-08 4.7E-13 93.7 11.4 78 53-134 6-93 (114)
207 2d9o_A DNAJ (HSP40) homolog, s 98.8 1.2E-08 4.2E-13 91.8 10.6 64 64-134 27-90 (100)
208 2dnr_A Synaptojanin-1; RRM dom 98.7 2.2E-08 7.5E-13 88.4 8.1 75 51-134 4-86 (91)
209 1owx_A Lupus LA protein, SS-B, 98.6 7.9E-08 2.7E-12 89.5 9.6 85 52-142 16-104 (121)
210 1ufw_A Synaptojanin 2; RNP dom 98.5 3E-07 1E-11 81.6 8.0 73 51-132 12-93 (95)
211 3dxb_A Thioredoxin N-terminall 98.3 1.2E-06 4.2E-11 88.6 8.7 67 67-133 142-212 (222)
212 2l9w_A U4/U6 snRNA-associated- 97.7 0.00013 4.4E-09 66.3 9.8 74 51-130 18-96 (117)
213 1wey_A Calcipressin 1; structu 96.7 0.0026 9E-08 57.3 6.8 74 53-132 4-82 (104)
214 1uw4_A UPF3X; nonsense mediate 95.6 0.04 1.4E-06 48.5 8.2 68 55-122 2-71 (91)
215 1whv_A Poly(A)-specific ribonu 94.6 0.085 2.9E-06 47.0 7.3 55 55-117 16-70 (100)
216 1wwh_A Nucleoporin 35, nucleop 94.6 0.13 4.5E-06 47.4 8.8 72 53-132 23-95 (119)
217 3p3d_A Nucleoporin 53; structu 94.3 0.067 2.3E-06 50.1 6.3 87 54-142 7-107 (132)
218 2dhx_A Poly (ADP-ribose) polym 94.1 0.18 6.1E-06 45.3 8.5 71 53-132 7-82 (104)
219 3ctr_A Poly(A)-specific ribonu 92.8 0.13 4.3E-06 46.0 5.1 54 56-117 7-60 (101)
220 2kn4_A Immunoglobulin G-bindin 90.8 0.17 5.8E-06 47.6 4.1 45 83-129 2-46 (158)
221 2i2y_A Fusion protein consists 90.4 0.14 4.9E-06 47.9 3.2 42 92-134 9-51 (150)
222 2l08_A Regulator of nonsense t 89.7 0.35 1.2E-05 43.0 4.8 79 54-132 9-94 (97)
223 3pq1_A Poly(A) RNA polymerase; 84.2 0.54 1.8E-05 52.9 3.5 64 54-124 53-116 (464)
224 3d45_A Poly(A)-specific ribonu 61.0 19 0.00063 40.9 8.4 56 54-118 440-495 (507)
225 3m91_B Prokaryotic ubiquitin-l 60.7 3.1 0.00011 31.3 1.3 23 726-748 16-38 (44)
226 2v75_A Nuclear polyadenylated 53.0 36 0.0012 30.0 6.9 61 689-749 6-72 (104)
227 4gyx_A Type III collagen fragm 50.7 21 0.00071 24.2 3.8 7 7-13 2-8 (31)
228 3qks_C DNA double-strand break 36.1 17 0.00057 25.8 1.7 25 697-721 7-31 (34)
229 2g0c_A ATP-dependent RNA helic 30.8 86 0.0029 25.4 5.7 68 56-132 2-75 (76)
230 3m9d_G Prokaryotic ubiquitin-l 30.2 7.4 0.00025 31.9 -1.0 24 725-748 39-62 (68)
231 4f25_A Polyadenylate-binding p 21.0 25 0.00085 30.9 0.6 18 52-69 95-112 (115)
No 1
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=286.00 Aligned_cols=106 Identities=44% Similarity=0.889 Sum_probs=101.3
Q ss_pred hHHhhhhcCCCChhhhhcccccccccchhhhhhhhhhhHHHHHHhhhCcchhHHHHHHHHhhhcCCCHHHHHHHHHHhhh
Q 004191 659 DAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILD 738 (769)
Q Consensus 659 ~~~~l~~~iP~~k~~lf~~~i~W~~vd~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld 738 (769)
|+++||++||++|++||+|+|+|++||.++|.++|+|||++||+||||++|++||+||+++|..|.+|+.|+++|++|||
T Consensus 13 ~~k~li~~IP~~Ke~Lf~~~i~W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~LD 92 (119)
T 3v53_A 13 HIKSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLD 92 (119)
T ss_dssp SSHHHHHHSCSSHHHHHHSCCCTTTSCHHHHHHTHHHHHHHHHHHHTC---CHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHhcccCChhhhhHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 004191 739 DEAEMFVLKMWRMLIFEIKKVETGLA 764 (769)
Q Consensus 739 e~a~~fv~~lWrllife~~~~~~gl~ 764 (769)
++|+.||.+||||||||+++++.||+
T Consensus 93 eeA~~FV~kLWrlLIfe~ea~~~Gl~ 118 (119)
T 3v53_A 93 EEAEVFIVKMWRLLIYETEAKKIGLV 118 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999996
No 2
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=99.87 E-value=1.2e-22 Score=185.41 Aligned_cols=92 Identities=21% Similarity=0.435 Sum_probs=84.2
Q ss_pred CChhhhhcccccccccchhhhhhhhhhhHHHHHHhhhCcchhHHHHHHHHhhhc-CCCHHHHHHHHHHhhh-HHHHHHHH
Q 004191 669 KTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD-HVKASQMLELLQTILD-DEAEMFVL 746 (769)
Q Consensus 669 ~~k~~lf~~~i~W~~vd~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~-~~~p~~l~~~l~~~ld-e~a~~fv~ 746 (769)
+.++.+|+++|||..|+.. .|+|||++||++|||++|++||||||++|.. +.+|+.|+++|++||+ ++|..||.
T Consensus 5 ~kfp~~f~~kVD~~kV~l~----~ikpWI~kki~e~LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~ 80 (111)
T 1mp1_A 5 LKFAECLEKKVDMSKVNLE----VIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMG 80 (111)
T ss_dssp CCCCSGGGGCCCTTTSCSG----GGHHHHHHHHHHHHSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHH
T ss_pred ccCCHHHhccccHHHhhHH----HHHHHHHHHHHHHcCCccHHHHHHHHHHhhccCCCHHHHHHHHHHHhCcccHHHHHH
Confidence 3467899999999999865 4799999999999999999999999999987 6899999999999999 99999999
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 004191 747 KMWRMLIFEIKKVETGLAL 765 (769)
Q Consensus 747 ~lWrllife~~~~~~gl~~ 765 (769)
+||+||||. .+...||..
T Consensus 81 eLW~LLi~a-q~~~~GIP~ 98 (111)
T 1mp1_A 81 ELWPLLLSA-QENIAGIPS 98 (111)
T ss_dssp HHHHHHHHH-TTSSSSCCH
T ss_pred HHHHHHHHh-hcCCcCcCH
Confidence 999999975 788888864
No 3
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.3e-20 Score=162.94 Aligned_cols=74 Identities=22% Similarity=0.365 Sum_probs=68.2
Q ss_pred cchhhhh-hhhhhhHHHHHHhhhCcchhHHHHHHHHhhhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004191 684 YDKHELH-ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 757 (769)
Q Consensus 684 vd~~~~~-~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~~lWrllife~~ 757 (769)
||.+.++ +.|+|||++||++|||++|++||+||+++|..|.+|+.|+++|++|||++|..||.+||+||++-+.
T Consensus 8 ~d~~kv~l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~aq~ 82 (92)
T 1x4q_A 8 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGRS 82 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHHSC
T ss_pred ccchHHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 4555554 7899999999999999999999999999999999999999999999999999999999999997653
No 4
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=1.3e-19 Score=203.59 Aligned_cols=88 Identities=18% Similarity=0.377 Sum_probs=81.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.||+.+|..+|..||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chhhHHHH
Q 004191 132 TREYLERY 139 (769)
Q Consensus 132 ~kk~l~~~ 139 (769)
..+....|
T Consensus 180 ~~~~~~~~ 187 (437)
T 3pgw_S 180 RGRTVKGW 187 (437)
T ss_pred CCCCCCCC
Confidence 86654333
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=147.98 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
..+++|||+|||+.+|+++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ch
Q 004191 132 TR 133 (769)
Q Consensus 132 ~k 133 (769)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 6
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=156.88 Aligned_cols=93 Identities=26% Similarity=0.380 Sum_probs=85.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G--~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
...++|||||||+.+++++|+.+|..|| .|..|.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999998899999999999999999999999999999999999999
Q ss_pred ecchhhHHHHHHHhh
Q 004191 130 QATREYLERYVDKKT 144 (769)
Q Consensus 130 ~A~kk~l~~~~~kk~ 144 (769)
+|.++.+..|.....
T Consensus 133 ~a~~~~~~~~e~~~r 147 (156)
T 3n9u_C 133 PATRQNLSQFEAQAR 147 (156)
T ss_dssp ECCHHHHHHHHHHHH
T ss_pred EcCCCcchhhhhhcc
Confidence 999999888875443
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=144.47 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
++.++|||+|||+.+++++|+.+|++||.|..+.|+.++.||+++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 744
No 8
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=6e-16 Score=142.00 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
+.
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 9
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-15 Score=144.36 Aligned_cols=85 Identities=25% Similarity=0.323 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 50 ~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
.....++|||+|||+.+++.+|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
++..+
T Consensus 118 ~a~~~ 122 (139)
T 1u6f_A 118 LAASG 122 (139)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 99744
No 10
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.64 E-value=6.6e-16 Score=133.64 Aligned_cols=83 Identities=19% Similarity=0.373 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.64 E-value=7.4e-16 Score=132.17 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=77.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred h
Q 004191 134 E 134 (769)
Q Consensus 134 k 134 (769)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=139.47 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=75.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEec
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMVDQA 131 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G-~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~L-nG~~I~GR~L~Vd~A 131 (769)
+++|||+|||+.+|+++|+.+|+.|| .|..+++++++.+|.++|||||+|.+.++|.+||..| |+..|+|+.|.|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999889999999999999999999999877 567899999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=136.67 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 754
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=1.2e-15 Score=131.40 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=135.70 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 123 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~--------ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G 123 (769)
.+.++|||+|||+.+++++|+.+|..||.|.. +.++.++.+|.++|||||+|.+.++|..||..|||..|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 44799999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred eEEEEEecc
Q 004191 124 QELMVDQAT 132 (769)
Q Consensus 124 R~L~Vd~A~ 132 (769)
+.|.|.+|.
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 16
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=132.44 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
++.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 35789999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 17
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=2.2e-15 Score=137.80 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 18
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.9e-16 Score=140.53 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++.+|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999999888999999999999999999999 89999999999999998
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
..+
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 19
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=134.26 Aligned_cols=83 Identities=25% Similarity=0.475 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.++++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
..+
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 754
No 20
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=1.5e-15 Score=134.51 Aligned_cols=82 Identities=27% Similarity=0.440 Sum_probs=78.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
++
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 21
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=138.84 Aligned_cols=85 Identities=25% Similarity=0.472 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 50 ~~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
...+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 99754
No 22
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=4.3e-16 Score=139.69 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=78.4
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC-eE
Q 004191 53 PQTKVYVGKIAP------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QE 125 (769)
Q Consensus 53 ~~~tLfVgNLp~------~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G-R~ 125 (769)
..++|||+|||+ .+++.+|+.+|++||.|..+.++.++.||+++|||||+|.+.++|.+||..|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 99999999999999999999999998899999999999999999999999999999999 99
Q ss_pred EEEEecchh
Q 004191 126 LMVDQATRE 134 (769)
Q Consensus 126 L~Vd~A~kk 134 (769)
|.|.+|.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999854
No 23
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=134.11 Aligned_cols=83 Identities=24% Similarity=0.386 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3457999999999999999999999999999999999998899999999999999999999999 999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9754
No 24
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.7e-15 Score=131.89 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 5
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=135.30 Aligned_cols=84 Identities=20% Similarity=0.302 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9754
No 26
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=133.55 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
..+
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 27
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=1.8e-15 Score=137.07 Aligned_cols=83 Identities=24% Similarity=0.270 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 754
No 28
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=3.3e-15 Score=136.43 Aligned_cols=84 Identities=19% Similarity=0.368 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 92 a~~~ 95 (115)
T 2dgo_A 92 ATRK 95 (115)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 9854
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.61 E-value=1.5e-15 Score=139.50 Aligned_cols=80 Identities=19% Similarity=0.387 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++|||+|||+.+++.+|+.+|..||.|..|+|+.+. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 36789999999999999999999999999999999984 5589999999999999999999999999999999999987
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
.+
T Consensus 82 ~~ 83 (115)
T 4f25_A 82 SR 83 (115)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 30
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=136.40 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 31
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=4.9e-16 Score=136.30 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=72.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G--~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.+|||+|||+.+++++|+.+|+.|| .|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998899999999999999999999999999999999999999987
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 32
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=133.80 Aligned_cols=83 Identities=19% Similarity=0.400 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~i-kiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+ .++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357999999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 9754
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=136.61 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGT--VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQE 125 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~--V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~----~I~GR~ 125 (769)
..-.||||+|||+.+|+++|+.+|++||. |..|++++++.||.++|||||+|.+.++|.+||..|||. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34579999999999999999999999995 679999999999999999999999999999999999996 589999
Q ss_pred EEEEecc
Q 004191 126 LMVDQAT 132 (769)
Q Consensus 126 L~Vd~A~ 132 (769)
|.|+||.
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999986
No 34
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=135.63 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34579999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+...
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 9743
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=135.59 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC------CceeCCeE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN------KFNIDGQE 125 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln------G~~I~GR~ 125 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||..|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEecchh
Q 004191 126 LMVDQATRE 134 (769)
Q Consensus 126 L~Vd~A~kk 134 (769)
|.|.++.++
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999854
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.9e-15 Score=134.75 Aligned_cols=84 Identities=21% Similarity=0.425 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec-CCCCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMV 128 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d-~~tGk~rGfgFVeF~s~e~A~~Al~~L-nG~~I~GR~L~V 128 (769)
....++|||+|||+.+++.+|+.+|..||.|..|.++.+ +.+|.++|||||+|.+.++|.+||..| ||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 445799999999999999999999999999999999998 679999999999999999999999999 999999999999
Q ss_pred Eecchh
Q 004191 129 DQATRE 134 (769)
Q Consensus 129 d~A~kk 134 (769)
.++.++
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999754
No 37
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=132.03 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=134.62 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.7e-15 Score=134.02 Aligned_cols=83 Identities=23% Similarity=0.420 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 754
No 40
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=4.2e-15 Score=128.91 Aligned_cols=80 Identities=24% Similarity=0.396 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3457999999999999999999999999999999999998899999999999999999999997 688999999999987
Q ss_pred c
Q 004191 131 A 131 (769)
Q Consensus 131 A 131 (769)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=2.7e-15 Score=134.89 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee---CCeEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQELM 127 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I---~GR~L~ 127 (769)
..+.++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..+ +|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34579999999999999999999999999999999999988999999999999999999999999999998 899999
Q ss_pred EEecchh
Q 004191 128 VDQATRE 134 (769)
Q Consensus 128 Vd~A~kk 134 (769)
|.++..+
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9999744
No 42
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=5.1e-15 Score=133.30 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457999999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 43
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.4e-15 Score=135.23 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~--------~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
..+.++|||+|||+.+++.+|+.+|..||.|. .+.++.++.+|.++|||||+|.+.++|.+||..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34579999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEecchh
Q 004191 123 GQELMVDQATRE 134 (769)
Q Consensus 123 GR~L~Vd~A~kk 134 (769)
|+.|.|.++.++
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999999754
No 44
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.59 E-value=8.7e-16 Score=137.44 Aligned_cols=81 Identities=22% Similarity=0.436 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecC-CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~-~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
...++|||+|||+.+++++|+.+|..|| |..+.++.++ .+|+++|||||+|.+.++|.+|| .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4579999999999999999999999999 9999999987 58999999999999999999999 7999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8754
No 45
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=132.44 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE----L 126 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~-~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~----L 126 (769)
...++|||+|||+.+++++|+.+|..||.|. .+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4579999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEecchh
Q 004191 127 MVDQATRE 134 (769)
Q Consensus 127 ~Vd~A~kk 134 (769)
.|.||...
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998743
No 46
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=4.2e-15 Score=130.87 Aligned_cols=80 Identities=24% Similarity=0.462 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 457999999999999999999999999999999999986 5999999999999999999999999999999999999998
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=6.4e-15 Score=132.22 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC---eEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG---QELMV 128 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G---R~L~V 128 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|.+||..|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999996 89999999999999999999999999999998 99999
Q ss_pred Eecchh
Q 004191 129 DQATRE 134 (769)
Q Consensus 129 d~A~kk 134 (769)
.+|..+
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 999854
No 48
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=132.39 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~---tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.++. +|.++|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999998865 5689999999999999999999999999999999999
Q ss_pred Eecchh
Q 004191 129 DQATRE 134 (769)
Q Consensus 129 d~A~kk 134 (769)
.++..+
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 999754
No 49
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=6.5e-15 Score=132.03 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++++|+.+|..|| |..|.++.++.+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4579999999999999999999999997 999999999889999999999999999999999 79999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
..+
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=130.27 Aligned_cols=82 Identities=24% Similarity=0.335 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..|.++.++ +.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4457999999999999999999999999999999999984 34689999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9854
No 51
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=3.7e-15 Score=138.27 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++.+|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
..+
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=5.5e-15 Score=128.36 Aligned_cols=80 Identities=25% Similarity=0.407 Sum_probs=76.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999999875
Q ss_pred h
Q 004191 134 E 134 (769)
Q Consensus 134 k 134 (769)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 53
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=4.4e-15 Score=128.54 Aligned_cols=81 Identities=23% Similarity=0.435 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-CcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk-~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+++|||+|||+.+++.+|+.+|..||.|..+.++.++.++. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999876665 8999999999999999999999999999999999998
Q ss_pred ch
Q 004191 132 TR 133 (769)
Q Consensus 132 ~k 133 (769)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 54
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.9e-15 Score=132.07 Aligned_cols=81 Identities=25% Similarity=0.461 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC-CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~t-Gk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
.+.++|||+|||+.+++.+|+.+|..|| |..|.++.++.+ |.++|||||+|.+.++|.+|| .|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3469999999999999999999999999 999999999877 999999999999999999999 8999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9754
No 55
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=2.3e-14 Score=132.83 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++.+|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4557999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
|...
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 9854
No 56
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.5e-15 Score=135.12 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++.+|+.+|+.||.|..+.++.+. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3457999999999999999999999999999999999884 45899999999999999999999999999999999999
Q ss_pred cchhh
Q 004191 131 ATREY 135 (769)
Q Consensus 131 A~kk~ 135 (769)
+.++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98653
No 57
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.5e-15 Score=131.87 Aligned_cols=82 Identities=27% Similarity=0.356 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345799999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 90 a~~~ 93 (103)
T 2d9p_A 90 AQRK 93 (103)
T ss_dssp CSSC
T ss_pred eccc
Confidence 9854
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=4.4e-15 Score=139.68 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=79.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9754
No 59
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.9e-15 Score=131.33 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999998888888889999999999999999999999999999999999999998
Q ss_pred ch
Q 004191 132 TR 133 (769)
Q Consensus 132 ~k 133 (769)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 60
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=6e-15 Score=134.37 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|..||..+ |..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 455799999999999999999999999999999999999889999999999999999999999965 5999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8754
No 61
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.9e-14 Score=128.79 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++.+|+.+|..||.|..|.++.++ +.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457999999999999999999999999999999999884 34899999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 9855
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.57 E-value=7.4e-15 Score=135.34 Aligned_cols=82 Identities=18% Similarity=0.364 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++++|+.+|..||.|..|.++.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.+.
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 744
No 63
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-14 Score=129.21 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4457899999999999999999999999999999999998899999999999999999999999 57899999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9854
No 64
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.2e-15 Score=134.99 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||.. ||..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3469999999999999999999999999999999999988999999999999999999999996 999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 854
No 65
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=8.7e-15 Score=142.73 Aligned_cols=83 Identities=24% Similarity=0.270 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..|.|+.++.+|.++|||||+|.+...|..||..|||..|+|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
..+
T Consensus 150 ~~~ 152 (165)
T 1rk8_A 150 FVK 152 (165)
T ss_dssp EEC
T ss_pred cCC
Confidence 855
No 66
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=141.24 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQE 125 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~--ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~----~I~GR~ 125 (769)
...++|||+|||+.+++++|+.+|..||.|.. |+|+.++.+|.++|||||+|.+. +|..||..|||. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 99999988999999999999999 999999999999 999999
Q ss_pred EEEEecchh
Q 004191 126 LMVDQATRE 134 (769)
Q Consensus 126 L~Vd~A~kk 134 (769)
|.|.++.+.
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999753
No 67
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=132.44 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||..||+ .|+|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44579999999999999999999999999999999999988999999999999999999999999998 89999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9643
No 68
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.3e-15 Score=133.92 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V-~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
.+.++|||+|||+.+++.+|+.+|..||.| ..|.|+.++ +|.++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 457899999999999999999999999999 889999997 999999999999999999999996 99999999999999
Q ss_pred cchhhHHHH
Q 004191 131 ATREYLERY 139 (769)
Q Consensus 131 A~kk~l~~~ 139 (769)
+.++.....
T Consensus 91 a~~~~~~~~ 99 (114)
T 2cpy_A 91 VTLEDMREI 99 (114)
T ss_dssp ECHHHHHHH
T ss_pred CCHHHHHHH
Confidence 997755443
No 69
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.1e-15 Score=135.52 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||||||+.+|+++|+.+|+.||.|..|.++.++. |.++|||||+|.+.++|..||. +||..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3468999999999999999999999999999999999975 9999999999999999999999 9999999999999987
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 6
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.9e-15 Score=132.72 Aligned_cols=82 Identities=20% Similarity=0.343 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k-~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~-I~GR~L~Vd 129 (769)
.+.++|||+|||+.+++.+|+.+|.. ||.|..+.++.++ +|.++|||||+|.+.++|..||..|||.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45789999999999999999999999 9999999999997 99999999999999999999999999999 999999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
++.++
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 98744
No 71
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7.1e-15 Score=132.09 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44579999999999999999999999999999999999988999999999999999999999997 99999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8754
No 72
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=3.1e-14 Score=133.77 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred c
Q 004191 131 A 131 (769)
Q Consensus 131 A 131 (769)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 73
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.5e-15 Score=131.77 Aligned_cols=84 Identities=33% Similarity=0.557 Sum_probs=79.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred hhhH
Q 004191 133 REYL 136 (769)
Q Consensus 133 kk~l 136 (769)
.+..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 6643
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-15 Score=130.90 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999998776
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=8.6e-15 Score=128.08 Aligned_cols=81 Identities=25% Similarity=0.367 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.+ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999999884 8999999999999999999999999999999999999998
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.+.
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 743
No 76
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.1e-15 Score=136.58 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++.+|+.+|..||.|..+.++.+..+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999886666666799999999999999999999999 9999999999999999
Q ss_pred chhhHHH
Q 004191 132 TREYLER 138 (769)
Q Consensus 132 ~kk~l~~ 138 (769)
.++.+..
T Consensus 102 ~~~~~~~ 108 (124)
T 1wel_A 102 TKKGMLE 108 (124)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9775533
No 77
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=1.1e-14 Score=134.57 Aligned_cols=85 Identities=19% Similarity=0.182 Sum_probs=78.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~---V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
....++|||+|||+.+++++|+.+|..||. |..|.|+.++. |+++|||||+|.+.++|.+||. |||..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345799999999999999999999999999 89999999864 9999999999999999999999 999999999999
Q ss_pred EEecchhhHH
Q 004191 128 VDQATREYLE 137 (769)
Q Consensus 128 Vd~A~kk~l~ 137 (769)
|.++..+.+.
T Consensus 92 V~~a~~~~~~ 101 (118)
T 2db1_A 92 VFKSHRTEMD 101 (118)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999866543
No 78
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.56 E-value=7.3e-15 Score=132.67 Aligned_cols=79 Identities=16% Similarity=0.304 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-
Q 004191 52 KPQTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ- 124 (769)
Q Consensus 52 ~~~~tLfVgNLp~~v------te~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR- 124 (769)
...++|||+|||+.+ +..+|+.+|+.||.|..+.++. .+|.++|||||+|.+.++|..||..|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 7799999999999999999883 5899999999999999999999999999999998
Q ss_pred EEEEEecc
Q 004191 125 ELMVDQAT 132 (769)
Q Consensus 125 ~L~Vd~A~ 132 (769)
.|.|.++.
T Consensus 91 ~l~V~~a~ 98 (105)
T 2nlw_A 91 TFRVNLFT 98 (105)
T ss_dssp EEEEECSC
T ss_pred eEEEEEcc
Confidence 99999986
No 79
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=126.28 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++.+|+.+|..| .|..+.++.+ .+|.++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3457999999999999999999999999 8999999999 799999999999999999999999 999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8754
No 80
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=4.6e-15 Score=130.56 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
++.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999998888888889999999999999999999999999999999999999987
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 81
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.56 E-value=4.3e-15 Score=125.24 Aligned_cols=75 Identities=21% Similarity=0.334 Sum_probs=72.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 56 tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
+|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+. |||..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9999999999999876
No 82
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=128.12 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr----~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
...++|||+|||+.+++++|+ .+|..||.|..+.++.++.+ +|||||+|.+.++|.+||..|||..|+|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 346899999999999999999 99999999999999988644 89999999999999999999999999999999
Q ss_pred EEecchh
Q 004191 128 VDQATRE 134 (769)
Q Consensus 128 Vd~A~kk 134 (769)
|.+|.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9999744
No 83
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=6.8e-15 Score=151.60 Aligned_cols=88 Identities=19% Similarity=0.358 Sum_probs=81.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G--~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..++|||+|||+.+++.+|+.+|..|| .|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred cchhhHHHHH
Q 004191 131 ATREYLERYV 140 (769)
Q Consensus 131 A~kk~l~~~~ 140 (769)
|.+..+..+.
T Consensus 147 a~~~~~~~~~ 156 (229)
T 3q2s_C 147 VNKQFLSQFE 156 (229)
T ss_dssp CCHHHHHHHH
T ss_pred CCCCccchhh
Confidence 9987766553
No 84
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=130.74 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++++|+.+|..||.|..|.++.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999986 799999999999999999999999999999999999999
Q ss_pred cch
Q 004191 131 ATR 133 (769)
Q Consensus 131 A~k 133 (769)
+..
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 863
No 85
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.55 E-value=1.8e-14 Score=138.67 Aligned_cols=84 Identities=20% Similarity=0.263 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.+.
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 9743
No 86
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=9.9e-15 Score=135.03 Aligned_cols=80 Identities=20% Similarity=0.361 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3689999999999999999999999999999999999889999999999999999999999 799999999999999987
Q ss_pred h
Q 004191 133 R 133 (769)
Q Consensus 133 k 133 (769)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 87
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.54 E-value=2.4e-14 Score=137.93 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|+|+.|.|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ch
Q 004191 132 TR 133 (769)
Q Consensus 132 ~k 133 (769)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 88
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=136.03 Aligned_cols=80 Identities=13% Similarity=0.247 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr----~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
.+.++|||+|||+.+++++|+ .+|++||.|..|.+.. +|.++|||||+|.+.++|..||..|||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 447899999999999998765 7999999999987743 789999999999999999999999999999999999
Q ss_pred EEecchh
Q 004191 128 VDQATRE 134 (769)
Q Consensus 128 Vd~A~kk 134 (769)
|.||..+
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999855
No 89
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.4e-14 Score=127.85 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++++|+.+|..||.|..|.++. ++.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4578999999999999999999999999999999855 4678999999999999999999999999999999999998
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
..+
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 743
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=130.69 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe-ecCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 127 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~-V~~ikiv-~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln--G~~I~GR~L~ 127 (769)
.+.++|||+|||+.+++++|+.+|..||. |..+.++ .+..+|.++|||||+|.+.++|..|+..|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34789999999999999999999999998 9999998 777789999999999999999999999996 5999999999
Q ss_pred EEecchh
Q 004191 128 VDQATRE 134 (769)
Q Consensus 128 Vd~A~kk 134 (769)
|.||.++
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9999754
No 91
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=5.3e-15 Score=125.01 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=73.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..+| ..|+|+.|.|.+|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 579999999999999999999999999999999998899999999999999999999999999 99999999999873
No 92
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.54 E-value=3.1e-15 Score=130.53 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=74.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecchh
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 134 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~kk 134 (769)
++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.+ |..|+..|||..|+|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 99999999999999999999999865
Q ss_pred hH
Q 004191 135 YL 136 (769)
Q Consensus 135 ~l 136 (769)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 33
No 93
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.9e-14 Score=128.45 Aligned_cols=83 Identities=24% Similarity=0.334 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee--------C
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--------D 122 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I--------~ 122 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457999999999999999999999999999999999997 999999999999999999999999999999 5
Q ss_pred CeEEEEEecchh
Q 004191 123 GQELMVDQATRE 134 (769)
Q Consensus 123 GR~L~Vd~A~kk 134 (769)
|++|.|.||.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998753
No 94
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=3.9e-14 Score=124.83 Aligned_cols=81 Identities=11% Similarity=0.246 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.+.-||||||++.++++.|+.+|.+||+|..++++. ++|||||+|.+.++|..|+..|||..|+|+.|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 58999999999999999999999999999999999997
Q ss_pred hhhHHHH
Q 004191 133 REYLERY 139 (769)
Q Consensus 133 kk~l~~~ 139 (769)
...+..|
T Consensus 80 e~~~~~~ 86 (89)
T 2wbr_A 80 ENEVQSI 86 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 95
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=132.17 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~---V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
....++|||+|||+.+++.+|+.+|..||. |..+.++.++. |.++|||||+|.+.++|.+||. |||..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 446799999999999999999999999998 89999999975 9999999999999999999999 999999999999
Q ss_pred EEecchhhHH
Q 004191 128 VDQATREYLE 137 (769)
Q Consensus 128 Vd~A~kk~l~ 137 (769)
|.++.++.+.
T Consensus 86 V~~a~~~~~~ 95 (107)
T 2lmi_A 86 VYEINNEDVD 95 (107)
T ss_dssp CEECCHHHHH
T ss_pred EEECCHHHHH
Confidence 9999876554
No 96
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=3.8e-15 Score=132.95 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|.. .++.+..+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34789999999999999999999999999888 666666789999999999999999999999 9999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 97
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-14 Score=128.98 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~-ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
...++|||+|||+.+++.+|+.+|..||.|.. +.|+.+ .+|+++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45789999999999999999999999999987 888888 6999999999999999999999996 99999999999998
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8754
No 98
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.3e-14 Score=130.69 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCCCC---CCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004191 53 PQTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPSNG---TPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr---~lF~k~G~V~~ikiv~d~~tG---k~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L 126 (769)
..++|||+|||+.+++++|+ .+|..||.|..+.++.+..++ .++|||||+|.+.++|.+||..|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46899999999999999999 999999999999999886544 566999999999999999999999999999999
Q ss_pred EEEecchhh
Q 004191 127 MVDQATREY 135 (769)
Q Consensus 127 ~Vd~A~kk~ 135 (769)
.|.+|.++.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998764
No 99
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2e-14 Score=131.08 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln--G~~I~GR~L~Vd 129 (769)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..||..|+ +..|+|+.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45799999999999999999999999999999999865 6999999999999999999886 478999999999
Q ss_pred ecchhh
Q 004191 130 QATREY 135 (769)
Q Consensus 130 ~A~kk~ 135 (769)
+|..+.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 998653
No 100
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=3.9e-14 Score=129.28 Aligned_cols=80 Identities=13% Similarity=0.242 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35789999999999999999999999999999999864 566999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 854
No 101
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=131.91 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++++|+.+|..||.|..+.+..+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45799999999999999999999999999843322222227899999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
..+
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 854
No 102
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.6e-14 Score=128.93 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++.+|+.+|..||.|..+.++ .++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 346899999999999999999999999999999987 35699999999999999999999999999999999998
Q ss_pred ch
Q 004191 132 TR 133 (769)
Q Consensus 132 ~k 133 (769)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 103
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.52 E-value=1.7e-14 Score=127.45 Aligned_cols=81 Identities=15% Similarity=0.313 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr----~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L 126 (769)
..+.++|||+|||+.+++.+|+ .+|..||.|..+.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3457999999999999999999 9999999999998873 67889999999999999999999999999999999
Q ss_pred EEEecchh
Q 004191 127 MVDQATRE 134 (769)
Q Consensus 127 ~Vd~A~kk 134 (769)
.|.++.++
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99999865
No 104
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=124.74 Aligned_cols=74 Identities=16% Similarity=0.347 Sum_probs=68.5
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 004191 54 QTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 126 (769)
Q Consensus 54 ~~tLfVgNLp~~v------te~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR-~L 126 (769)
.++|||+|||+.+ +..+|+.+|++||.|..+.++. .+|.++|||||+|.+.++|..|+..|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 6799999999999999999873 5899999999999999999999999999999999 88
Q ss_pred EEE
Q 004191 127 MVD 129 (769)
Q Consensus 127 ~Vd 129 (769)
.|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 105
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.1e-14 Score=126.72 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHh--CCceeCCeEEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMV 128 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~L--nG~~I~GR~L~V 128 (769)
..+.++|||+|||+.+++++|+.+|..||.|..+.++.+ +|||||+|.+.++|..|+..| ++..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 445789999999999999999999999999999988764 699999999999999999977 578899999999
Q ss_pred Eecchh
Q 004191 129 DQATRE 134 (769)
Q Consensus 129 d~A~kk 134 (769)
.|+..+
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 999855
No 106
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.51 E-value=3e-14 Score=135.62 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=78.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~---V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
....++|||+|||+.+|+++|+.+|..||. |..|.++.++. |+++|||||+|.+.++|.+||. |||..|+|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345789999999999999999999999999 88999999975 9999999999999999999999 999999999999
Q ss_pred EEecchhhHH
Q 004191 128 VDQATREYLE 137 (769)
Q Consensus 128 Vd~A~kk~l~ 137 (769)
|.++.++.+.
T Consensus 119 V~~a~~~e~~ 128 (136)
T 2hgl_A 119 VFKSHRTEMD 128 (136)
T ss_dssp EEECCHHHHH
T ss_pred EEECChHHHH
Confidence 9999876543
No 107
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1e-13 Score=125.64 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC-----eEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-----QEL 126 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G-----R~L 126 (769)
...++|||+|||+.+++++|+.+|..||.|..|.++.+ |||||+|.+.++|..||..|||..|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34789999999999999999999999999999999875 899999999999999999999999999 999
Q ss_pred EEEecchh
Q 004191 127 MVDQATRE 134 (769)
Q Consensus 127 ~Vd~A~kk 134 (769)
.|.+|.++
T Consensus 86 ~V~~a~~~ 93 (108)
T 1x4c_A 86 RVKVDGPR 93 (108)
T ss_dssp EEEESSCC
T ss_pred EEEeCCCC
Confidence 99999853
No 108
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.3e-14 Score=124.54 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++++|+.+|..||.| .++.+ .+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3457999999999999999999999999987 56666 5899999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9754
No 109
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.50 E-value=8.2e-14 Score=124.22 Aligned_cols=76 Identities=13% Similarity=0.363 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 51 ~~~~~tLfVgNLp~-~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
.++.++|||+|||+ .+++++|+.+|..||.|..+.+. +|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34579999999999 99999999999999999999883 6899999999999999999999999999999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
++..+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98743
No 110
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.1e-14 Score=125.11 Aligned_cols=81 Identities=21% Similarity=0.364 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..|+ .+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34579999999999999999999999774 677888877999999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9754
No 111
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=1.8e-14 Score=136.47 Aligned_cols=84 Identities=20% Similarity=0.263 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+...
T Consensus 124 a~~~ 127 (135)
T 2lea_A 124 ARYG 127 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9743
No 112
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.50 E-value=1.5e-14 Score=121.81 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 56 tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
+|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+. ++|..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999998899999999999999999999999 6999999999999875
No 113
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=6.5e-14 Score=127.51 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++++|+.+|..||.|..+.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4557999999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 9754
No 114
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=1.7e-13 Score=135.80 Aligned_cols=84 Identities=15% Similarity=0.218 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++.+|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4557999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cchhh
Q 004191 131 ATREY 135 (769)
Q Consensus 131 A~kk~ 135 (769)
|....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 98553
No 115
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9.1e-14 Score=127.30 Aligned_cols=79 Identities=20% Similarity=0.149 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++|||+|||+.+++++|+.+|..| .|..|.|+.++ +|+++|||||+|.+.++|.+|| .|||..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999 89999999996 5999999999999999999999 599999999999999887
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 116
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.49 E-value=7.7e-14 Score=126.05 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~--I~GR~L~Vd 129 (769)
++.++|||+|||+.+++++|+.+|++||.|..+.+++ .+|||||+|.+.++|.+|+..|||.. |+|++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4578999999999999999999999999999999875 36899999999999999999999876 789999999
Q ss_pred ecchhh
Q 004191 130 QATREY 135 (769)
Q Consensus 130 ~A~kk~ 135 (769)
++..+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998653
No 117
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.49 E-value=8e-14 Score=130.87 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=72.7
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCC----HHH----HHHHHH--HhCCce
Q 004191 55 TKVYVGKI----APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES----AEG----VLRALR--LLNKFN 120 (769)
Q Consensus 55 ~tLfVgNL----p~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s----~e~----A~~Al~--~LnG~~ 120 (769)
+.|||||| |+.+++..|+.+|+.||.|.+|.++.|+.||.++|||||+|.+ +.. |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred eCCeEEEEEecchhhH
Q 004191 121 IDGQELMVDQATREYL 136 (769)
Q Consensus 121 I~GR~L~Vd~A~kk~l 136 (769)
|+|+.|+|.+-..-.+
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999976654333
No 118
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=3.2e-13 Score=141.30 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVD 129 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~-GR~L~Vd 129 (769)
..+.++|||+|||+.+++++|+.+|..||.|..+.++.+. +|||||+|.+.++|.+||..|||..|+ |+.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4457899999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred ecc
Q 004191 130 QAT 132 (769)
Q Consensus 130 ~A~ 132 (769)
||.
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 119
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=122.95 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++.+|+.+|..||.|. +.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3468999999999999999999999999996 66664 467899999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 120
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.7e-14 Score=127.88 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++++|+.+|..|| ++.+.|+.++ +|+++|||||+|.+.++|.+||. +|+..|+|+.|.|..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3468999999999999999999999999 5599999997 99999999999999999999996 8999999999999887
Q ss_pred ch
Q 004191 132 TR 133 (769)
Q Consensus 132 ~k 133 (769)
..
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 121
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=2.4e-14 Score=127.98 Aligned_cols=80 Identities=28% Similarity=0.423 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++++|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|..||. ||..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 346899999999999999999999999999999999997 99999999999999999999999 999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 854
No 122
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.48 E-value=1e-13 Score=140.13 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=78.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
+.+||||||||+.+++++|+.+|..||.|.+|.|++++.+|.++|||||+|.+.++|..||..|||..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 123
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=120.58 Aligned_cols=76 Identities=20% Similarity=0.406 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3457999999999999999999999999999999987 47999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9754
No 124
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=124.96 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
....++|||+|||+.+++.+|+.+|..||.|..|.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345799999999999999999999999999999999875 69999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 96 a~~~ 99 (109)
T 1x4g_A 96 GKES 99 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9754
No 125
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=2e-13 Score=121.02 Aligned_cols=77 Identities=19% Similarity=0.400 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~--GR~L~Vd 129 (769)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.+ +|||||+|.+.++|..|+..|||..|+ |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34689999999999999999999999999999998754 689999999999999999999999999 9999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
++.++
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99854
No 126
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.3e-13 Score=129.67 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 004191 131 AT 132 (769)
Q Consensus 131 A~ 132 (769)
|.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 127
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.8e-13 Score=117.91 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMVD 129 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~L-nG~~I~GR~L~Vd 129 (769)
....++|||+|||+.+++.+|+.+|..||.|..+.++.+ +|||||+|.+.++|..|+..| ||..|+|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345789999999999999999999999999999999864 689999999999999999988 9999999999999
Q ss_pred ecc
Q 004191 130 QAT 132 (769)
Q Consensus 130 ~A~ 132 (769)
||.
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=4.5e-14 Score=124.62 Aligned_cols=79 Identities=15% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+ ..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457999999999999999999999999988766 24789999999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 8754
No 129
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=1.4e-13 Score=126.53 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G-~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
..++|||+|||+.+++++|+.+|..|| .|..+.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 899998853 357899999999999999999999999999999999998
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 743
No 130
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9.7e-14 Score=125.80 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEE
Q 004191 52 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF--NIDGQELMV 128 (769)
Q Consensus 52 ~~~~tLfVgNLp~-~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~--~I~GR~L~V 128 (769)
.+.++|||+|||+ .+++.+|+.+|..||.|..+.|+.+ +|||||+|.+.++|..||..||+. .|+|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999865 389999999999999999999864 599999999
Q ss_pred Eecch
Q 004191 129 DQATR 133 (769)
Q Consensus 129 d~A~k 133 (769)
.+|..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99984
No 131
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9.7e-14 Score=129.25 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln--G~~I~GR~L~Vd 129 (769)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+ +|||||+|.+.++|.+|+..|+ +..|.|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45789999999999999999999999999999999875 6999999999999999999888 468999999999
Q ss_pred ecchhh
Q 004191 130 QATREY 135 (769)
Q Consensus 130 ~A~kk~ 135 (769)
+|..+.
T Consensus 103 ~a~~k~ 108 (119)
T 2ad9_A 103 FSNHKE 108 (119)
T ss_dssp ECSSSS
T ss_pred EccCCC
Confidence 998553
No 132
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=121.88 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.+ +|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45789999999999999999999999999999998754 689999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 133
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=3e-13 Score=118.66 Aligned_cols=76 Identities=26% Similarity=0.419 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+.+++ +||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34579999999999999999999999999999999874 4999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 79 a~~~ 82 (92)
T 2dgt_A 79 STSR 82 (92)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 9754
No 134
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=3.6e-14 Score=134.76 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEE--E---eecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK--R---AQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ik--i---v~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~ 125 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+. + +....+|.++|||||+|.+.++|.+||..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44579999999999999999999999999987641 1 111237999999999999999999999999999999999
Q ss_pred EEEEecchh
Q 004191 126 LMVDQATRE 134 (769)
Q Consensus 126 L~Vd~A~kk 134 (769)
|.|.+|...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999743
No 135
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=121.12 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~i-kiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
...++|||+|||+.+++.+|+.+|..||.|..+ .++.++.+ |.|||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999 58777544 3499999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9865
No 136
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2e-13 Score=123.95 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF--NIDGQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~--~I~GR~L~Vd 129 (769)
.+.++|||+|||+.+++.+|+.+|.+||.|..+.++.+ +|||||+|.+.++|..|+..||+. .|+|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999988753 699999999999999999988754 5999999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
|+..+
T Consensus 87 ~a~~~ 91 (104)
T 1wex_A 87 YSTSK 91 (104)
T ss_dssp ECSSS
T ss_pred EccCc
Confidence 99854
No 137
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=7.1e-15 Score=134.73 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 123 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~--------ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G 123 (769)
.+.++|||+|||+.+++.+|+.+|..||.|.. +.++.++.+|.++|||||+|.+.++|..||..|||..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999998 8899988889999999999999999999999999999999
Q ss_pred eEEEEEecchh
Q 004191 124 QELMVDQATRE 134 (769)
Q Consensus 124 R~L~Vd~A~kk 134 (769)
+.|.|.++.++
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998754
No 138
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.44 E-value=2.3e-13 Score=130.25 Aligned_cols=79 Identities=27% Similarity=0.386 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445799999999999999999999999999999999875 579999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 139
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=123.58 Aligned_cols=75 Identities=29% Similarity=0.400 Sum_probs=71.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecchh
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 134 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~kk 134 (769)
++|||+|||+.+++++|+.+|+.||.|..+.++.+ ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999875 7899999999999999999999999999999999999854
No 140
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.5e-13 Score=118.09 Aligned_cols=75 Identities=20% Similarity=0.366 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~--G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
.+.++|||+|||+.+++.+|+.+|..| |.|..+.++ +|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457999999999999999999999999 899988874 4699999999999999999999999999999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
++.++
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 99754
No 141
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=3.5e-13 Score=128.53 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=77.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999874
Q ss_pred h
Q 004191 134 E 134 (769)
Q Consensus 134 k 134 (769)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.44 E-value=4e-13 Score=121.85 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 52 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~~-vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
...++|||+|||+. +++++|+.+|..||.|..|.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999988 468999999999999999999999999999999999
Q ss_pred cch
Q 004191 131 ATR 133 (769)
Q Consensus 131 A~k 133 (769)
+..
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 873
No 143
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=125.03 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++|||+|||+.+++.+|+.+|..||.|..|.++. ++|||||+|.+.++|..||..|||..|+|+.|.|.||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999998864 46899999999999999999999999999999999998
Q ss_pred hhhH
Q 004191 133 REYL 136 (769)
Q Consensus 133 kk~l 136 (769)
...+
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6533
No 144
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.43 E-value=3.6e-13 Score=129.72 Aligned_cols=81 Identities=23% Similarity=0.470 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 4
No 145
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4.1e-13 Score=117.32 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++. +||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999974 4999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+.+.
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8743
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.43 E-value=3.1e-13 Score=129.53 Aligned_cols=82 Identities=18% Similarity=0.341 Sum_probs=78.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 147
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=127.90 Aligned_cols=86 Identities=20% Similarity=0.209 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V----~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
...++|||+|||+.+++++|+.+|..||.| ..|.|+.+ .+|+++|||||+|.+.++|.+||. +|+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEE
Confidence 457899999999999999999999999975 68999998 489999999999999999999999 499999999999
Q ss_pred EEecchhhHHHH
Q 004191 128 VDQATREYLERY 139 (769)
Q Consensus 128 Vd~A~kk~l~~~ 139 (769)
|..+.++.+...
T Consensus 99 V~~a~~~e~~~~ 110 (123)
T 2dha_A 99 LFRSTAAEVQQV 110 (123)
T ss_dssp CEEECHHHHHHH
T ss_pred EEECCHHHHHHH
Confidence 999987655443
No 148
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.42 E-value=5.9e-13 Score=119.31 Aligned_cols=75 Identities=16% Similarity=0.381 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.+++ |||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3468999999999999999999999999999999863 59999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 149
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.8e-13 Score=118.94 Aligned_cols=76 Identities=17% Similarity=0.359 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~-V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG-~~I~GR~L~Vd 129 (769)
.+.++|||+|||+.+++++|+.+|..||. |..+.+. ++|||||+|.+.++|..||..||| ..|+|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45789999999999999999999999999 5555552 368999999999999999999999 99999999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
++.++
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99754
No 150
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.6e-13 Score=120.20 Aligned_cols=76 Identities=14% Similarity=0.384 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 51 ~~~~~tLfVgNLp~-~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
..+.++|||+|||+ .+++.+|+.+|..||.|..+.+. +|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34579999999999 99999999999999999999984 5899999999999999999999999999999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
++..+
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 99754
No 151
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.41 E-value=2.4e-13 Score=127.85 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~--~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
...++|||+|||+.+++++|+.+|..| .|. .|.|+.++. |+++|||||+|.+.++|.+||. +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 446889999999999999999999999 577 899999975 9999999999999999999999 68899999999999
Q ss_pred ecchhh
Q 004191 130 QATREY 135 (769)
Q Consensus 130 ~A~kk~ 135 (769)
.+.++.
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987653
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=3.3e-13 Score=124.36 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 004191 51 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 127 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~-vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln--G~~I~GR~L~ 127 (769)
..+.++|||+|||+. +++.+|+.+|..||.|..+.|+. ++|||||+|.+.++|..||..|| +..|+|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 99999999999999999999864 36999999999999999999886 4569999999
Q ss_pred EEecchh
Q 004191 128 VDQATRE 134 (769)
Q Consensus 128 Vd~A~kk 134 (769)
|.+|.++
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9999744
No 153
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.9e-13 Score=117.88 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++|||+|||+.+++++|+.+|..||.|..| +.++.+|. ||||+|.+.++|.+||. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46899999999999999999999999999987 55555666 99999999999999999 99999999999999876
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
.+
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.40 E-value=1.3e-12 Score=128.59 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 155
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.40 E-value=6.8e-13 Score=130.50 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||. ++|..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 457899999999999999999999999999999999998899999999999999999999998 5999999999999998
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
...
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 754
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.40 E-value=6.5e-13 Score=132.63 Aligned_cols=83 Identities=31% Similarity=0.527 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 854
No 157
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.7e-12 Score=115.12 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|| .+++++|+.+|..||.|..|.+. .++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45789999996 89999999999999999999884 56799999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 158
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.39 E-value=3.4e-13 Score=129.31 Aligned_cols=81 Identities=21% Similarity=0.382 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +||..|+|+.|.|.+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 36799999999999999999999999999999999998899999999999999999999998 99999999999999998
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 159
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.39 E-value=5.6e-13 Score=116.19 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++|||+|||+.+++++|+.+|..| .|..+.+. .++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 568999999999999999999999999999999999987
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.38 E-value=9.5e-13 Score=132.99 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++|||+|||+.+++.+|+.+|..||.|..+.|+.+. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35789999999999999999999999999999999983 5579999999999999999999999999999999999998
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 65
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.38 E-value=1.3e-12 Score=128.57 Aligned_cols=82 Identities=17% Similarity=0.349 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.+|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3468999999999999999999999999999999999988999999999999999999999984 899999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 181 ~~k 183 (196)
T 1l3k_A 181 LSK 183 (196)
T ss_dssp C--
T ss_pred CCh
Confidence 865
No 162
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.38 E-value=1.4e-12 Score=114.57 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce--eCCeEEEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMV 128 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~--I~GR~L~V 128 (769)
..+.++|||||||+.+++++|+.+|++||.|..+.++.+ ++|||||+|.+.++|.+ |+|.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 345799999999999999999999999999999999874 78999999999999883 56655 45999999
Q ss_pred Eecchh
Q 004191 129 DQATRE 134 (769)
Q Consensus 129 d~A~kk 134 (769)
.+|.++
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 999865
No 163
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.37 E-value=2e-13 Score=130.39 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++++|+.+|..|| |..|.|+.++ +|+++|||||+|.+.++|.+|| .+|+..|+|+.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4568999999999999999999999999 7799999996 5999999999999999999999 69999999999999888
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 744
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=120.29 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~t---Gk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
...++|||+|||+.+++++|+.+|..||.|. +.++.+..+ |.++|||||+|.+.++|.+||..|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888887666 7999999999999999999999885 478888777
Q ss_pred Eecc
Q 004191 129 DQAT 132 (769)
Q Consensus 129 d~A~ 132 (769)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.36 E-value=7e-13 Score=121.81 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE-----EE
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE-----LM 127 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~-----L~ 127 (769)
..++|||+|||+.+++++|+.+|..||.|..|.|+.+ |||||+|.+.++|..||..|||..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999765 89999999999999999999999999998 66
Q ss_pred EEecc
Q 004191 128 VDQAT 132 (769)
Q Consensus 128 Vd~A~ 132 (769)
|..+.
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 66555
No 166
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.5e-12 Score=123.97 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=73.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecchh
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 134 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~kk 134 (769)
++|||+|||+.+++++|+.+|..||.|..+.++.++ +|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999985 6889999999999999999999999999999999999998643
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.36 E-value=2.6e-12 Score=123.03 Aligned_cols=80 Identities=24% Similarity=0.357 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G--R~L~Vd 129 (769)
...++|||+|||+.+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 456899999999999999999999999999999999998799999999999999999999999999999987 999999
Q ss_pred ec
Q 004191 130 QA 131 (769)
Q Consensus 130 ~A 131 (769)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=115.09 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=63.2
Q ss_pred CcE-EEEcCCCCCCCHHH----HHHHHhhcC-CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 54 QTK-VYVGKIAPTADSDF----VLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 54 ~~t-LfVgNLp~~vte~~----Lr~lF~k~G-~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
..| |||+|||+.++.+. |..+|+.|| .|..+ +| |||||.|.+.++|.+|+..|||..|.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999887 558999995 99887 34 9999999999999999999999999999999
Q ss_pred EEecch
Q 004191 128 VDQATR 133 (769)
Q Consensus 128 Vd~A~k 133 (769)
|++|..
T Consensus 78 v~~A~~ 83 (96)
T 2diu_A 78 VSFTPK 83 (96)
T ss_dssp EESSCC
T ss_pred EEecCC
Confidence 999973
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.35 E-value=1.7e-12 Score=129.55 Aligned_cols=82 Identities=26% Similarity=0.364 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999998887
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.34 E-value=2.4e-12 Score=111.08 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=66.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~----G-------~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~ 120 (769)
.+.++|||+|||+.+++++|+.+|..| | .|..+.++.+ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999988654 699999999999999999 899999
Q ss_pred eCCeEEEEEe
Q 004191 121 IDGQELMVDQ 130 (769)
Q Consensus 121 I~GR~L~Vd~ 130 (769)
|+|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.34 E-value=2.9e-12 Score=122.20 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE--EEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE--LMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~--L~Vd 129 (769)
...++|||+|||+.+++++|+.+|..||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999965 8888
Q ss_pred ec
Q 004191 130 QA 131 (769)
Q Consensus 130 ~A 131 (769)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 172
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.34 E-value=2.5e-12 Score=125.91 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G--R~L~Vd 129 (769)
....+|||+||++.+++++|+.+|++||.|..+.++.. .++|||||+|.+.++|..|+..|||..|.| +.|.|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34578999999999999999999999999999998653 357899999999999999999999999965 999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
|+..+
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 99855
No 173
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.4e-12 Score=118.92 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=68.6
Q ss_pred CCCcEEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee-----CCe
Q 004191 52 KPQTKVYV--GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-----DGQ 124 (769)
Q Consensus 52 ~~~~tLfV--gNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I-----~GR 124 (769)
.+.++||| |||++.+++++|+.+|++||.|..+.++.+ +|||||+|.+.++|.+|+..|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34688999 889999999999999999999999887542 68999999999999999999999998 689
Q ss_pred EEEEEecch
Q 004191 125 ELMVDQATR 133 (769)
Q Consensus 125 ~L~Vd~A~k 133 (769)
.|.|+++..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999999863
No 174
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.33 E-value=3.6e-12 Score=120.38 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcce-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMV 128 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGf-gFVeF~s~e~A~~Al~~LnG~~I~G--R~L~V 128 (769)
.....|||+||++.+++++|..+|+.||.|..+.++.. .+|| |||+|.+..+|..|+..|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34578999999999999999999999999999988764 2588 9999999999999999999999988 99999
Q ss_pred Eecchhh
Q 004191 129 DQATREY 135 (769)
Q Consensus 129 d~A~kk~ 135 (769)
+|+..+.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998653
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.33 E-value=3.2e-12 Score=129.32 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 52 KPQTKVYVGKIA-PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp-~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
.+.++|||+||| +.+++++|+.+|+.||.|.+++++.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 89999999999999999999999865 369999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8744
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.32 E-value=2.4e-12 Score=123.31 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999998899999999999999999999999 4678999999999987
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.31 E-value=1.1e-11 Score=112.51 Aligned_cols=82 Identities=17% Similarity=0.076 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEeecCCC-CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004191 52 KPQTKVYVGKIAP-----TADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (769)
Q Consensus 52 ~~~~tLfVgNLp~-----~vte~~Lr~lF~k~G~V~~ikiv~d~~t-Gk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~ 125 (769)
.++++|+|.||.. .-+..+|+.+|++||.|..+.++.++.+ +.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999963 2367899999999999999999998643 689999999999999999999999999999999
Q ss_pred EEEEecch
Q 004191 126 LMVDQATR 133 (769)
Q Consensus 126 L~Vd~A~k 133 (769)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999975
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.30 E-value=4.5e-12 Score=121.95 Aligned_cols=79 Identities=15% Similarity=0.329 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMV 128 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~---GR~L~V 128 (769)
...++|||+|||+.+++.+|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..+. |++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 357899999999999999999999999999999999985 7999999999999999999999999998876 499999
Q ss_pred Eec
Q 004191 129 DQA 131 (769)
Q Consensus 129 d~A 131 (769)
.||
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.30 E-value=5.2e-12 Score=121.50 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 127 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tG--k~rGfgFVeF~s~e~A~~Al~~LnG~~I~---GR~L~ 127 (769)
..++|||+|||+.+++.+|+.+|..||.|..+.++.++.+| .++|||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998776 89999999999999999999999998876 67788
Q ss_pred EEecch
Q 004191 128 VDQATR 133 (769)
Q Consensus 128 Vd~A~k 133 (769)
|.++..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 877763
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.30 E-value=4.7e-12 Score=117.74 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|| .+++++|+.+|..||.|..|.++ .++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999995 69999999999999999999885 46799999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 855
No 181
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=8.1e-12 Score=117.07 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcce-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMVDQ 130 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGf-gFVeF~s~e~A~~Al~~LnG~~I~G--R~L~Vd~ 130 (769)
...|||+||++.++++.|..+|+.||.|..+.++.. .|| |||+|.+.++|..|+..|||..|.| +.|.|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999998652 286 9999999999999999999999987 6899999
Q ss_pred cchhh
Q 004191 131 ATREY 135 (769)
Q Consensus 131 A~kk~ 135 (769)
|.++.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98653
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.29 E-value=7.6e-12 Score=130.87 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr----~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L 126 (769)
..+.++|||+|||+.+++++|+ .+|..||.|..|.++. +|+++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4458999999999999999966 8999999999999875 78999999999999999999999999999999999
Q ss_pred EEEecchh
Q 004191 127 MVDQATRE 134 (769)
Q Consensus 127 ~Vd~A~kk 134 (769)
.|.|+..+
T Consensus 83 ~v~~a~~~ 90 (282)
T 3pgw_A 83 RIQYAKTD 90 (282)
T ss_pred EEEEeccC
Confidence 99998644
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.29 E-value=6.2e-12 Score=121.75 Aligned_cols=78 Identities=15% Similarity=0.251 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++.+|+.+|..||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 457899999999999999999999999988765 358999999999999999999999999999999999999999
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 184
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3e-12 Score=111.29 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=64.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
...++|||+|||+.+++++|+.+|..||.|..+.++.+ ++|||||+|.+.++|.+|+. .++.+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 34799999999999999999999999999999998764 68999999999999975432 134558999999998
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.++
T Consensus 76 ~~~ 78 (88)
T 1wf0_A 76 EPK 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.28 E-value=6.7e-12 Score=128.17 Aligned_cols=78 Identities=14% Similarity=0.234 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 52 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 52 ~~~~tLfVgNLp~-~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
.+.++|||+|||+ .+++++|+.+|..||.|..+.++.++ +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4579999999999 99999999999999999999998863 78999999999999999999999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+...
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 8744
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.28 E-value=9.5e-12 Score=124.79 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.++|||+|||+.++..+|+.+|+.||.|..+.++.+. +|.++|||||+|.+.++|..||..+ +..|+|+.|.|.++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 5899999999999999999999999999999999985 6999999999999999999999855 569999999999875
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.27 E-value=7.1e-12 Score=131.73 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004191 51 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 128 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~-vte~~Lr~lF~k~G~V~~ikiv~d~~-tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~V 128 (769)
....++|||+|||+. +++++|+.+|..||.|..+.++.+.. ||.++|||||+|.+.++|.+|+ .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345789999999999 99999999999999999999999865 5999999999999999999999 99999999999999
Q ss_pred Eecchh
Q 004191 129 DQATRE 134 (769)
Q Consensus 129 d~A~kk 134 (769)
.||.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999865
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.25 E-value=2.1e-11 Score=127.67 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
..++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
++
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.23 E-value=2.2e-11 Score=127.50 Aligned_cols=85 Identities=21% Similarity=0.213 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 51 EKPQTKVYVGKIAPTA-DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~v-te~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
....++|||+|||+.+ ++++|+.+|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3457899999999995 899999999999999999999985 89999999999999999999999999999999999999
Q ss_pred ecchhhH
Q 004191 130 QATREYL 136 (769)
Q Consensus 130 ~A~kk~l 136 (769)
|+.++..
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987644
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.20 E-value=6e-12 Score=121.83 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 130 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~ 130 (769)
..+.++|||+|||+.+++++|+.+|..||.+.. .++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 345799999999999999999999999998766 334444588999999999999999999995 999999999999999
Q ss_pred cchh
Q 004191 131 ATRE 134 (769)
Q Consensus 131 A~kk 134 (769)
+..+
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8754
No 191
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.19 E-value=2.3e-11 Score=126.22 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 004191 51 EKPQTKVYVGKIAPTA---------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~v---------te~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I 121 (769)
....++||||||++.+ ++..|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..|+..|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999998 79999999999999999999864 69999999999999999999999999
Q ss_pred ------------CCeEEEEEecchh
Q 004191 122 ------------DGQELMVDQATRE 134 (769)
Q Consensus 122 ------------~GR~L~Vd~A~kk 134 (769)
.|+.|.|.||..+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999855
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.17 E-value=2.6e-11 Score=120.00 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=71.5
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 004191 54 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 132 (769)
Q Consensus 54 ~~tLfVgNLp~-~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~ 132 (769)
.++|||+|||+ .+++++|+.+|..||.|..|.++.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998763 7899999999999999999999999999999999987
Q ss_pred hh
Q 004191 133 RE 134 (769)
Q Consensus 133 kk 134 (769)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.17 E-value=8.3e-11 Score=122.50 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
.+.++|||+|||+.+|+.+|+.+|..||.|..|.+..+ +|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45789999999999999999999999999999998643 699999999999999999999999999999999988
Q ss_pred ch
Q 004191 132 TR 133 (769)
Q Consensus 132 ~k 133 (769)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.2e-10 Score=106.31 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce
Q 004191 52 KPQTKVYVGKIAPTAD-----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vt-----------e~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~ 120 (769)
.+.++|+|.||..... +++|+.+|.+||.|..+.| .++ .++|||||+|.+.++|.+|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3478999999955433 4799999999999999965 442 489999999999999999999999999
Q ss_pred eCCeEEEEEecchh
Q 004191 121 IDGQELMVDQATRE 134 (769)
Q Consensus 121 I~GR~L~Vd~A~kk 134 (769)
|+|+.|.|.++.++
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998754
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.15 E-value=1.2e-10 Score=105.60 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCC--CCCC--------HHHHHHHHhhcCCeeEEEEeecCCC--CCCcceEEEEeCCHHHHHHHHHHhCCc
Q 004191 52 KPQTKVYVGKIA--PTAD--------SDFVLSVLKVCGTVKSWKRAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKF 119 (769)
Q Consensus 52 ~~~~tLfVgNLp--~~vt--------e~~Lr~lF~k~G~V~~ikiv~d~~t--Gk~rGfgFVeF~s~e~A~~Al~~LnG~ 119 (769)
.+++.|++.||- ..+. .++|+..|++||.|.++.|+.++.+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 457889999983 2332 2589999999999999999988644 468999999999999999999999999
Q ss_pred eeCCeEEEEEecchh
Q 004191 120 NIDGQELMVDQATRE 134 (769)
Q Consensus 120 ~I~GR~L~Vd~A~kk 134 (769)
.|+||.|.|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998744
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.15 E-value=9.2e-11 Score=116.08 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G-~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~-GR~L~Vd 129 (769)
++.++|||+|||+.+++.+|+.+|..|| .|..+.++.+ .+|||||+|.+.++|.+|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999998664 2689999999999999999999999999 9999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
|+.+.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98753
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.14 E-value=6.4e-11 Score=119.69 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCe--eEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe----E
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV--KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ----E 125 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V--~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR----~ 125 (769)
.+.++|||+|||+.+++++|+.+|+.||.| ..++++.+. |..+|||||+|.+.++|..||..|||..|+|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 457899999999999999999999999999 899988763 66679999999999999999999999999876 5
Q ss_pred EEEEec
Q 004191 126 LMVDQA 131 (769)
Q Consensus 126 L~Vd~A 131 (769)
+.|.+|
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666654
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.13 E-value=9.4e-11 Score=123.16 Aligned_cols=81 Identities=15% Similarity=0.245 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 131 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G-~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A 131 (769)
..++|||+|||+.+++.+|+.+|..|| .|..+.++.++ .|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 99999999885 5889999999999999999999999999999999999998
Q ss_pred chh
Q 004191 132 TRE 134 (769)
Q Consensus 132 ~kk 134 (769)
.+.
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.12 E-value=1.4e-10 Score=120.84 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC-CceeC---CeEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-KFNID---GQELM 127 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln-G~~I~---GR~L~ 127 (769)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.+ .+|.++|||||+|.+.++|.+||..|| |..+. |++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 45789999999999999999999999999999999999 599999999999999999999999995 55554 99999
Q ss_pred EEecch
Q 004191 128 VDQATR 133 (769)
Q Consensus 128 Vd~A~k 133 (769)
|.++..
T Consensus 173 v~~~~~ 178 (261)
T 3sde_A 173 VEPMEQ 178 (261)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999873
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.11 E-value=3.9e-11 Score=108.71 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=65.1
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004191 59 VGKIAPTADSDFVLSVL------------KVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (769)
Q Consensus 59 VgNLp~~vte~~Lr~lF------------~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L 126 (769)
+.|||+.+++.+|+.+| ++||.|..+.++.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67788888888777776 999999999999885 58999999999999999999999999999999999
Q ss_pred EEEec
Q 004191 127 MVDQA 131 (769)
Q Consensus 127 ~Vd~A 131 (769)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.10 E-value=1.9e-10 Score=117.32 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 004191 52 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVD 129 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~~Lr~lF~k~G-~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~-GR~L~Vd 129 (769)
.+.++|||+|||+.+++.+|+.+|..|| .|..+.++.. .+|||||+|.+.++|.+|+..|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999998653 3689999999999999999999999999 9999999
Q ss_pred ecchh
Q 004191 130 QATRE 134 (769)
Q Consensus 130 ~A~kk 134 (769)
|+.+.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99753
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.07 E-value=2.3e-10 Score=112.53 Aligned_cols=74 Identities=22% Similarity=0.387 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~----G-------~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I 121 (769)
..++|||+|||+.+++++|+.+|..| | .|..+.+ +.++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 4555544 456899999999999999999 7999999
Q ss_pred CCeEEEEEecch
Q 004191 122 DGQELMVDQATR 133 (769)
Q Consensus 122 ~GR~L~Vd~A~k 133 (769)
+|+.|.|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999998864
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.05 E-value=5.2e-10 Score=103.79 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCC--C---CHHHHHHHHhhcCCeeEEEEeecCC----CCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 004191 53 PQTKVYVGKIAPT--A---DSDFVLSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 123 (769)
Q Consensus 53 ~~~tLfVgNLp~~--v---te~~Lr~lF~k~G~V~~ikiv~d~~----tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G 123 (769)
++++|++.||-.. + -.++|+..|++||.|..+.|+.++. ++.++||+||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4789999999432 2 2469999999999999999998854 45678999999999999999999999999999
Q ss_pred eEEEEEecch
Q 004191 124 QELMVDQATR 133 (769)
Q Consensus 124 R~L~Vd~A~k 133 (769)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999874
No 204
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.05 E-value=3.9e-10 Score=108.35 Aligned_cols=73 Identities=22% Similarity=0.403 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~----G-------~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I 121 (769)
+.++|||+|||+.+++++|+.+|..| | .|..+.+. .++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 66666553 45799999999999999999 7999999
Q ss_pred CCeEEEEEecc
Q 004191 122 DGQELMVDQAT 132 (769)
Q Consensus 122 ~GR~L~Vd~A~ 132 (769)
+|+.|.|.++.
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999999875
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.90 E-value=2.5e-09 Score=116.36 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=65.8
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---Ce-
Q 004191 51 EKPQTKVYVGK--IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQ- 124 (769)
Q Consensus 51 ~~~~~tLfVgN--Lp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~---GR- 124 (769)
..+..+||||| |++.+++++|+.+|++||.|..+.++. .+|||||+|.+.++|.+||..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45578999999 588999999999999999999887743 4699999999999999999999999983 45
Q ss_pred -EEEEEecc
Q 004191 125 -ELMVDQAT 132 (769)
Q Consensus 125 -~L~Vd~A~ 132 (769)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57788874
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.85 E-value=1.4e-08 Score=93.65 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCCCC----------HHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 53 PQTKVYVGKIAPTAD----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 53 ~~~tLfVgNLp~~vt----------e~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
+++.|.+.||-..-. .++|+..|++||.|..+.+..+. ++|||||+|.+.++|.+|+..|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356788888743221 24889999999999999987652 5899999999999999999999999999
Q ss_pred CeEEEEEecchh
Q 004191 123 GQELMVDQATRE 134 (769)
Q Consensus 123 GR~L~Vd~A~kk 134 (769)
|+.|.|.++...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998743
No 207
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.2e-08 Score=91.85 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecchh
Q 004191 64 PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 134 (769)
Q Consensus 64 ~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~kk 134 (769)
..+++.+|+.+|.+||.|..+.|+ +.++|||||+|.+.++|..||..+++ +.|+.|.|.|+..+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 468999999999999999999987 47889999999999999999997554 67999999998744
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=2.2e-08 Score=88.40 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=64.0
Q ss_pred CCCCcEEEEcCCCC----CCCH----HHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 51 EKPQTKVYVGKIAP----TADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 51 ~~~~~tLfVgNLp~----~vte----~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
+++..||+|..++. .+-+ ..|...|..||.|..++++.+ .+||+|.+.++|.+||. |||+.|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 34567888887762 3333 478899999999999999886 38999999999999999 9999999
Q ss_pred CeEEEEEecchh
Q 004191 123 GQELMVDQATRE 134 (769)
Q Consensus 123 GR~L~Vd~A~kk 134 (769)
|+.|+|..+++.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999999865
No 209
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=7.9e-08 Score=89.52 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCC-HHHHHHHHHHhC--CceeCCeEEE
Q 004191 52 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALRLLN--KFNIDGQELM 127 (769)
Q Consensus 52 ~~~~tLfVgNLp~~-vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s-~e~A~~Al~~Ln--G~~I~GR~L~ 127 (769)
+.++.|||+||++. ++..+|+.+|+.||.|.+|.++.+.. .|||.|.+ ...|..|+..|| |..|.|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45899999999999 99999999999999999999988752 69999999 899999999995 8889999999
Q ss_pred EEecchhhHHHHHHH
Q 004191 128 VDQATREYLERYVDK 142 (769)
Q Consensus 128 Vd~A~kk~l~~~~~k 142 (769)
+.......-..|-.+
T Consensus 90 ~evL~GeeE~~yw~K 104 (121)
T 1owx_A 90 WEVLEGEVEKEALKK 104 (121)
T ss_dssp EEECCHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHH
Confidence 987776555555443
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=3e-07 Score=81.60 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCC------CCH---HHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 004191 51 EKPQTKVYVGKIAPT------ADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~------vte---~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I 121 (769)
+++..||+|..++.. ..+ ..|.+.|..||.|..++++.+. +||+|.+.++|.+||. |||..|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 445789999888743 333 3688999999999999999873 9999999999999999 999999
Q ss_pred CCeEEEEEecc
Q 004191 122 DGQELMVDQAT 132 (769)
Q Consensus 122 ~GR~L~Vd~A~ 132 (769)
+|+.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.30 E-value=1.2e-06 Score=88.57 Aligned_cols=67 Identities=18% Similarity=0.072 Sum_probs=60.3
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecC----CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecch
Q 004191 67 DSDFVLSVLKVCGTVKSWKRAQYP----SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 133 (769)
Q Consensus 67 te~~Lr~lF~k~G~V~~ikiv~d~----~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd~A~k 133 (769)
.+.+|...|++||.|..+.++.+. .+|.++||+||+|.+.++|.+|+..|||..++||.|.|.++..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 456899999999999999998653 3458999999999999999999999999999999999999873
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00013 Score=66.29 Aligned_cols=74 Identities=9% Similarity=0.089 Sum_probs=67.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004191 51 EKPQTKVYVGKIAPTADSDFVLSVLKVC-----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (769)
Q Consensus 51 ~~~~~tLfVgNLp~~vte~~Lr~lF~k~-----G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~ 125 (769)
....++|-+-|||..+++..|+.|+..| |.+..+.++.+- |-|+|+|.+...|.+|.-.|+|.+|.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3447888899999999999999999999 999999998873 67999999999999999889999999999
Q ss_pred EEEEe
Q 004191 126 LMVDQ 130 (769)
Q Consensus 126 L~Vd~ 130 (769)
|+|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99863
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.74 E-value=0.0026 Score=57.32 Aligned_cols=74 Identities=11% Similarity=-0.002 Sum_probs=62.9
Q ss_pred CCcEEEEcCCCCCC-CH----HHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 53 PQTKVYVGKIAPTA-DS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 53 ~~~tLfVgNLp~~v-te----~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
.+++|+|.||+..+ .. ..++.+|..|+.+..+..... -.=..|.|.+.++|.+|-..||+..++|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 46899999998855 22 477899999999999887654 12368999999999999999999999999999
Q ss_pred EEecc
Q 004191 128 VDQAT 132 (769)
Q Consensus 128 Vd~A~ 132 (769)
|-++.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99987
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.57 E-value=0.04 Score=48.52 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCC--cceEEEEeCCHHHHHHHHHHhCCceeC
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTP--KGFGFCEFESAEGVLRALRLLNKFNID 122 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~--rGfgFVeF~s~e~A~~Al~~LnG~~I~ 122 (769)
++|.|.+||+++|++.+...+..++.+..+.++.+..+.++ .+-|||.|.+.+++......++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57899999999999999999999998888877776544433 356899999999999999999999974
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.60 E-value=0.085 Score=47.00 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 004191 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (769)
Q Consensus 55 ~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln 117 (769)
..||+-+.|..+...+|..+|+.||.| .|..+-|. .|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 344444999999999999999999944 56667762 89999999999999999763
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.56 E-value=0.13 Score=47.40 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEec
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMVDQA 131 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~G-R~L~Vd~A 131 (769)
..+.|.|-+.|+.. ...+...|.+||.|+...... ...+-+|.|.+..+|.+||. .||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 36778888998885 567777899999999877621 12589999999999999999 89999984 77777776
Q ss_pred c
Q 004191 132 T 132 (769)
Q Consensus 132 ~ 132 (769)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 5
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.29 E-value=0.067 Score=50.12 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=60.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeec--------CCCCC-----CcceEEEEeCCHHHHHHHHHHhCCc
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQY--------PSNGT-----PKGFGFCEFESAEGVLRALRLLNKF 119 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~i-kiv~d--------~~tGk-----~rGfgFVeF~s~e~A~~Al~~LnG~ 119 (769)
...|.|-+.|+... ..+...|++||.|+.- .+..+ +.+.+ ..++-.|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45666778876655 4566789999998762 11110 00011 23577999999999999999 9999
Q ss_pred eeCCeEEEEEecchhhHHHHHHH
Q 004191 120 NIDGQELMVDQATREYLERYVDK 142 (769)
Q Consensus 120 ~I~GR~L~Vd~A~kk~l~~~~~k 142 (769)
.|+|..|-|....+..++.....
T Consensus 85 ii~G~mIGV~Py~~~~ve~l~~~ 107 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKDAVERLQKR 107 (132)
T ss_dssp EETTEECEEEECCHHHHHHHC--
T ss_pred EeCcEEEEEEECCHHHHHHHhcC
Confidence 99999999999887777555433
No 218
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.14 E-value=0.18 Score=45.34 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=57.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhh----c-CCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004191 53 PQTKVYVGKIAPTADSDFVLSVLKV----C-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (769)
Q Consensus 53 ~~~tLfVgNLp~~vte~~Lr~lF~k----~-G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~ 127 (769)
..++|.|.|||+.+.++.|.-+|.. . |.|..+.... +-|+|+|.+...|.+.|. -..+.|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 4689999999999999999999986 2 3666666532 478999999999999988 337888888888
Q ss_pred EEecc
Q 004191 128 VDQAT 132 (769)
Q Consensus 128 Vd~A~ 132 (769)
|....
T Consensus 78 V~P~~ 82 (104)
T 2dhx_A 78 LRPAP 82 (104)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 86544
No 219
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.79 E-value=0.13 Score=46.02 Aligned_cols=54 Identities=11% Similarity=0.043 Sum_probs=46.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 004191 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (769)
Q Consensus 56 tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~Ln 117 (769)
.||+-+.|..+...+|..+|+.|| -..|..+-|. .|||.|.+++.|..|+..++
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 455559999999999999999999 4567777773 89999999999999999765
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=90.80 E-value=0.17 Score=47.58 Aligned_cols=45 Identities=20% Similarity=0.039 Sum_probs=33.4
Q ss_pred EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 83 SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 83 ~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
.++++.+ ..+++|||||+|.+...|.+|+..+++....+..+.++
T Consensus 2 ~~kl~ln--~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~ 46 (158)
T 2kn4_A 2 QYKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYD 46 (158)
T ss_dssp EEEEEEE--CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred cEEEEec--CccccchhHHHHHHHHhHHHHHHhhcccCCCCCccccc
Confidence 4566766 34789999999999999999999888654433334443
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.41 E-value=0.14 Score=47.88 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=38.1
Q ss_pred CCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEecchh
Q 004191 92 NGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMVDQATRE 134 (769)
Q Consensus 92 tGk~rGfgFVeF~s~e~A~~Al~~L-nG~~I~GR~L~Vd~A~kk 134 (769)
..+.+|+++|+|.+.+.|.+|+..| ||..|+| .|.|+++.+.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4578999999999999999999999 9999999 9999988743
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=89.71 E-value=0.35 Score=43.01 Aligned_cols=79 Identities=10% Similarity=0.102 Sum_probs=56.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCC--cceEEEEeCCHHHHHHHHHHhCCceeCC-----eEE
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTP--KGFGFCEFESAEGVLRALRLLNKFNIDG-----QEL 126 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~--rGfgFVeF~s~e~A~~Al~~LnG~~I~G-----R~L 126 (769)
+-+|.|..||+.+|++.+...+..+-.+....++.+..+-++ .+-|||.|.+.+++......++|..+-+ .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457999999999999998888877655544444433323222 2458999999999999999999998742 234
Q ss_pred EEEecc
Q 004191 127 MVDQAT 132 (769)
Q Consensus 127 ~Vd~A~ 132 (769)
.|.+|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 456653
No 223
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=84.16 E-value=0.54 Score=52.91 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=45.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 124 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR 124 (769)
.++|||. .|..++..+|..+|++||.|..+.+..+ .| .|+.|+|.+.+++..++. ..+..+.+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~-~~~~p~~~~ 116 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQN-GTHTPXXXX 116 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHS-SCCCCCCBC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHh-ccCCCcccc
Confidence 5899997 7999999999999999999999988764 23 699999999999887765 334444443
No 224
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=60.99 E-value=19 Score=40.88 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=45.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCC
Q 004191 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK 118 (769)
Q Consensus 54 ~~tLfVgNLp~~vte~~Lr~lF~k~G~V~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG 118 (769)
...++|+ +|..+...+|..+|+.||. ..+..+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3556665 8888999999999999995 46666665 3799999999999999998853
No 225
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=60.66 E-value=3.1 Score=31.35 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 004191 726 ASQMLELLQTILDDEAEMFVLKM 748 (769)
Q Consensus 726 p~~l~~~l~~~lde~a~~fv~~l 748 (769)
-..||+++..||+.+|+.||..+
T Consensus 16 ~D~lLDeId~vLE~NAeeFV~~f 38 (44)
T 3m91_B 16 TDDLLDEIDDVLEENAEDFVRAY 38 (44)
T ss_dssp HHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 45899999999999999999754
No 226
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=52.97 E-value=36 Score=29.96 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=47.6
Q ss_pred hhhhhhhhHHHHHHhhhCcchh--HHHHHHHHhhhcCCCHHHHHHHHHHhhhHH----HHHHHHHHH
Q 004191 689 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDE----AEMFVLKMW 749 (769)
Q Consensus 689 ~~~~~~pwi~kki~e~lG~ee~--~lv~~i~~~l~~~~~p~~l~~~l~~~lde~----a~~fv~~lW 749 (769)
+-+-||--|.+|...+=.+-|+ .+.+||+=.+....+|..++.+|...+|.= -..||.-.+
T Consensus 6 i~~nLK~ivaekL~~~~NF~EDv~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt~F 72 (104)
T 2v75_A 6 YTENLKVIVAEKLAGIPNFNEDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQTAF 72 (104)
T ss_dssp CHHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 3456788899999888555544 488999999999999999999999999843 335665544
No 227
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=50.73 E-value=21 Score=24.18 Aligned_cols=7 Identities=86% Similarity=2.072 Sum_probs=3.5
Q ss_pred CCCCCCC
Q 004191 7 PPRPPGP 13 (769)
Q Consensus 7 Pp~PPg~ 13 (769)
||+||++
T Consensus 2 ppgppgp 8 (31)
T 4gyx_A 2 PPGPPGP 8 (31)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 4555553
No 228
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=36.08 E-value=17 Score=25.77 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=16.2
Q ss_pred HHHHHHhhhCcchhHHHHHHHHhhh
Q 004191 697 ISKKITEFLGEEETTLVDYIVSSTQ 721 (769)
Q Consensus 697 i~kki~e~lG~ee~~lv~~i~~~l~ 721 (769)
+..||+++||+.+=.=+|+|++.+.
T Consensus 7 ~ElKiI~l~Gek~~e~~d~vi~l~~ 31 (34)
T 3qks_C 7 FELKIIDILGEKDFDDFDYIIKLIT 31 (34)
T ss_dssp HHHHHHHHC------CHHHHHHHTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHH
Confidence 4689999999988888899998875
No 229
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=30.77 E-value=86 Score=25.43 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=40.5
Q ss_pred EEEEcC-CCCCCCHHHHHHHHhhcCCe-----eEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004191 56 KVYVGK-IAPTADSDFVLSVLKVCGTV-----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 129 (769)
Q Consensus 56 tLfVgN-Lp~~vte~~Lr~lF~k~G~V-----~~ikiv~d~~tGk~rGfgFVeF~s~e~A~~Al~~LnG~~I~GR~L~Vd 129 (769)
++||+. --..+...+|..++..-+.+ -.+.+.. .|.||+.... .+..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 566642 12345666777777755543 3444432 3888888654 4677888899999999999887
Q ss_pred ecc
Q 004191 130 QAT 132 (769)
Q Consensus 130 ~A~ 132 (769)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 230
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=30.19 E-value=7.4 Score=31.95 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 004191 725 KASQMLELLQTILDDEAEMFVLKM 748 (769)
Q Consensus 725 ~p~~l~~~l~~~lde~a~~fv~~l 748 (769)
+-..||++|..||..+|+.||..+
T Consensus 39 ~~D~lLDeId~vLe~NAeefV~~f 62 (68)
T 3m9d_G 39 ETDDLLDEIDDVLEENAEDFVRAY 62 (68)
T ss_dssp TTTTHHHHHTTTSSSCC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445899999999999999999754
No 231
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=21.02 E-value=25 Score=30.91 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=0.0
Q ss_pred CCCcEEEEcCCCCCCCHH
Q 004191 52 KPQTKVYVGKIAPTADSD 69 (769)
Q Consensus 52 ~~~~tLfVgNLp~~vte~ 69 (769)
...++|||+|||+.+|++
T Consensus 95 ~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp ------------------
T ss_pred CCCCceEeCCCCCCcccc
Confidence 346789999999999875
Done!