BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004193
(769 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 236/742 (31%), Positives = 388/742 (52%), Gaps = 34/742 (4%)
Query: 52 ELSVSPYDTAWVAMVPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKDXXXXX 111
E + S YDTAWVA +P+++ P FP+ + W+L NQ+ DGSWG +L D
Sbjct: 51 ETNPSAYDTAWVARIPAVDGSDNPHFPETVEWILQNQLKDGSWG--EGFYFLAYDRILAT 108
Query: 112 XXXXXXXKRWGIGEEQMNKGIQFIMSNFASVTDEKQ-QTPIGFDIIFPGMIECAQDLNLN 170
W GE Q+ KGI+F + + DE P GF+I+FP M++ A+ L L+
Sbjct: 109 LACIITLTLWRTGETQVQKGIEFFRTQAGKMEDEADSHRPSGFEIVFPAMLKEAKILGLD 168
Query: 171 LPLRSSDINAMLERRHLELNR---NYTAGRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSL 227
LP + ++E+R +L R + L Y EG+ ++ DW+ +MK Q K+GS
Sbjct: 169 LPYDLPFLKQIIEKREAKLKRIPTDVLYALPTTLLYSLEGLQEIVDWQKIMKLQSKDGSF 228
Query: 228 FNSPSTTAAALTHFHNAGCLHYLSSLLEKFGNAVPTVHPLDIYINLTMVESLESLGVDRH 287
+SP++TAA N CL +L+ +L+KFGN VP +PLD++ L V+++E LG+DRH
Sbjct: 229 LSSPASTAAVFMRTGNKKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRH 288
Query: 288 FRTEIKRVLDETYRFWLQ-----GEEEIFLDLTTCAMAFRLLRLNGYDVSSDPLTQFAED 342
F+ EIK LD Y W + E D+ AM R+LRL+GY+VSSD L F ++
Sbjct: 289 FKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDE 348
Query: 343 N-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQELSS-GSIHSN 400
N +F L + ++ +L + R S ++ +P E+++E+ + T +L+ L + +
Sbjct: 349 NGEFFCFLGQTQRGVTDMLNVNRCSHVS-FPGETIMEEAKLCTERYLRNALENVDAFDKW 407
Query: 401 RFSQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDNMRILKTSYCSLNIGNEYFQKLA 460
F +N+ +VE ALK+P+H ++ RL R I Y D++ + KT Y I NE + +LA
Sbjct: 408 AFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELA 467
Query: 461 VDDFNICQSMHIEELKHLERWVVEKRLDKLKFARQKQTYCYFSVAATLFSPELSDARMSW 520
DFN QS+H EL+ L RW L F R++ T YFS A+ +F PE S R +
Sbjct: 468 KLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRERVTEIYFSPASFIFEPEFSKCREVY 527
Query: 521 AKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVEIIFSALRSTICEF 580
K + T I+DD YD GS RWD+ + +Q++I F +T +
Sbjct: 528 TKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLV-DQMPQQMKICFVGFYNTFNDI 586
Query: 581 GDKTLTWQGRNATSHI-------VETCLRN------KSVPTLDEYMENAYASFALGPIIF 627
+ QGR+ +I +E + K VP+ +EY+ENA S ALG ++
Sbjct: 587 AKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVL 646
Query: 628 PAVYFVGPKLSEEVVRDPEFHNLY-KLVSTCGRLLNDIQGFKRESKEGKLNSVSLQMTYS 686
+ F G L++EV+ + + + +L+ GRL+ND + ++ E +G++ S
Sbjct: 647 ISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKD 706
Query: 687 DGNMTEVEAIEKIKVVIKSTXXXXXXXXXXXXGSIVPRACKDLIWKMSKVLHLFYMNTDG 746
++E EA++ + V+++ + +P K L+++ ++++ LFYM DG
Sbjct: 707 HPKISEEEALQHVYSVMENA---LEELNREFVNNKIPDIYKRLVFETARIMQLFYMQGDG 763
Query: 747 --FSSNVEMVKAVSEVVYEPIS 766
S ++E+ + V +++P++
Sbjct: 764 LTLSHDMEIKEHVKNCLFQPVA 785
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 236/746 (31%), Positives = 383/746 (51%), Gaps = 38/746 (5%)
Query: 53 LSVSPYDTAWVAMVPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKDXXXXXX 112
++ S YDTAWVA VP+++ P FPQ ++W+L NQ+ DGSWG+ + +L+ D
Sbjct: 79 ITPSAYDTAWVARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSH--FLLSDRLLATL 136
Query: 113 XXXXXXKRWGIGEEQMNKGIQFIMSNFASVTDEKQQTPI--GFDIIFPGMIECAQDLNLN 170
+W +G+ Q+ +GI+FI SN V DE Q + F+IIFP ++ AQ L L
Sbjct: 137 SCVLVLLKWNVGDLQVEQGIEFIKSNLELVKDETDQDSLVTDFEIIFPSLLREAQSLRLG 196
Query: 171 LPLRSSDINAMLERRH---LELNRNYTAGRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSL 227
LP I+ + +R +L+R L Y EGI + +WE +M+ Q ++GS
Sbjct: 197 LPYDLPYIHLLQTKRQERLAKLSREEIYAVPSPLLYSLEGIQDIVEWERIMEVQSQDGSF 256
Query: 228 FNSPSTTAAALTHFHNAGCLHYLSSLLEKFGNAVPTVHPLDIYINLTMVESLESLGVDRH 287
+SP++TA H +A CL +L+S++ KFGN VP ++P+D+ L +V+++ LG+ RH
Sbjct: 257 LSSPASTACVFMHTGDAKCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRH 316
Query: 288 FRTEIKRVLDETYRFWLQ-----GEEEIFLDLTTCAMAFRLLRLNGYDVSSDPLTQFAED 342
F EIK LD YR W + G DL T A+ FRLLRL+ Y+VS F +
Sbjct: 317 FEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDA 376
Query: 343 N-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQELSSGSIHSN- 400
N +F S + KD++++L LYRASQ+ +P E++L++ + + + +L++ L S
Sbjct: 377 NGKFICSTGQFNKDVASMLNLYRASQLA-FPGENILDEAKSFATKYLREALEKSETSSAW 435
Query: 401 RFSQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDNMRILKTSYCSLNIGNEYFQKLA 460
QN+S +++ ALK +H ++ R+ +R +Y D RI K Y + NE F +L
Sbjct: 436 NNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELG 495
Query: 461 VDDFNICQSMHIEELKHLERWVVEKRLDKLKFARQKQTYCYFSVAATLFSPELSDARMSW 520
DFNI QS+H EE+K++ W + L FAR++ YF VAA + P+ + R +
Sbjct: 496 KLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERPLEFYFLVAAGTYEPQYAKCRFLF 555
Query: 521 AKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVEIIFSALRSTICEF 580
K A L T++DD YD G+ RWD+ +N + +++ + + E
Sbjct: 556 TKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTEN-LPDYMKLCYQIYYDIVHEV 614
Query: 581 GDKTLTWQGRNATSHIVE-------------TCLRNKSVPTLDEYMENAYASFALGPIIF 627
+ QGR S + L + VPTLDEY++N S ++
Sbjct: 615 AWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLL 674
Query: 628 PAVYFV-GPKLSEEVVRDPEFHN---LYKLVSTCGRLLNDIQGFKRESKEGKLNSVSLQM 683
V + G LS+E + ++ L +L S RL +D + +K E G+L S S++
Sbjct: 675 SGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELAS-SIEC 733
Query: 684 TYSD-GNMTEVEAIEKIKVVIKSTXXXXXXXXXXXXGSIVPRACKDLIWKMSKVLHLFYM 742
D TE EA++ I +++ VP ACK ++++ ++V + +
Sbjct: 734 YMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDD--VPFACKKMLFEETRVTMVIFK 791
Query: 743 NTDGFS-SNVEMVKAVSEVVYEPISV 767
+ DGF S +E+ + E + EP+ +
Sbjct: 792 DGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 337 bits (864), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 222/756 (29%), Positives = 376/756 (49%), Gaps = 46/756 (6%)
Query: 43 RTEKMFDKI---ELSVSPYDTAWVAMVPSL--ELPQAPCFPQCINWLLDNQVNDGSWGLH 97
+ + MF+ + ++S S YDTAWVA + ++ + + P FPQ +NW+ +NQ+ DGSWG+
Sbjct: 16 KIKDMFNALGDGDISPSAYDTAWVARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIE 75
Query: 98 NRPSWLVKDXXXXXXXXXXXXKRWGIGEEQMNKGIQFIMSNFASVTDEKQQTPIGFDIIF 157
+ S + D W G Q+ +G +FI N + +E + +P F IIF
Sbjct: 76 SHFS--LCDRLLNTTNSVIALSVWKTGHSQVQQGAEFIAENLRLLNEEDELSP-DFQIIF 132
Query: 158 PGMIECAQDLNLNLPLRSSDINAMLERRHLELNRNYTAGRK--EYLAYVSEGIGKLQDWE 215
P +++ A+ L +NLP I + R L A + EG+ ++ DW
Sbjct: 133 PALLQKAKALGINLPYDLPFIKYLSTTREARLTDVSAAADNIPANMLNALEGLEEVIDWN 192
Query: 216 MVMKYQRKNGSLFNSPSTTAAALTHFHNAGCLHYLSSLLEKFGNAVPTVHPLDIYINLTM 275
+M++Q K+GS +SP++TA L + + C +L++LL+KFG VP ++ +D+ L++
Sbjct: 193 KIMRFQSKDGSFLSSPASTACVLMNTGDEKCFTFLNNLLDKFGGCVPCMYSIDLLERLSL 252
Query: 276 VESLESLGVDRHFRTEIKRVLDETYRFWLQ-----GEEEIFLDLTTCAMAFRLLRLNGYD 330
V+++E LG+ RHF+ EIK LD YR W + G + + DL T A+ R LR++GY+
Sbjct: 253 VDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYN 312
Query: 331 VSSDPLTQFAEDN-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLK 389
VSSD L F ++N +F +S ++ +V+ L+RAS + +PDE ++ + + +L+
Sbjct: 313 VSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLA-FPDERAMDDARKFAEPYLR 371
Query: 390 QELSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDNMRILKTSYCSL 449
+ L++ I +N + ++E +++P+H+++ RL R I+ Y+ + + KT Y
Sbjct: 372 EALAT-KISTN---TKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMP 427
Query: 450 NIGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLDKLKFARQKQTYCYFSVAATLF 509
++ N +LA DFNI QS+H EELK L RW E + + F R + YFS A F
Sbjct: 428 SLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAEVYFSSAT--F 485
Query: 510 SPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWD---VEEAKNCCSEQV 566
PE S R+++ K L + DD D+ + RWD + E C
Sbjct: 486 EPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCF 545
Query: 567 EIIFSALRSTICEFGDKTLTWQGRNATSHIVE------TC-------LRNKSVPTLDEYM 613
++ F + E + + QGR+ +HI + C L +PT +EY+
Sbjct: 546 KVWFKLME----EVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYL 601
Query: 614 ENAYASFALGPIIFPAVYFVGPKLSEEVVRDPEF-HNLYKLVSTCGRLLNDIQGFKRESK 672
+ S LGP + +G + ++VV + N+++LVS RL ND + ++ E
Sbjct: 602 KTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKA 661
Query: 673 EGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIKSTXXXXXXXXXXXXGSIVPRACKDLIWK 732
G+ S + TE +AI+ I V+ I P CK I+
Sbjct: 662 RGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDI-PMGCKSFIFN 720
Query: 733 MSKVLHLFYMNTDGFS-SNVEMVKAVSEVVYEPISV 767
+ + +FY DG+ +N E+ + +V +PI V
Sbjct: 721 LRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/490 (31%), Positives = 261/490 (53%), Gaps = 17/490 (3%)
Query: 52 ELSVSPYDTAWVAMVPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKDXXXXX 111
E+++S YDTAWVA++ + + + P FP + W+ +NQ++DGSWG S+ D
Sbjct: 29 EITISAYDTAWVALIDAGD--KTPAFPSAVKWIAENQLSDGSWGDAYLFSY--HDRLINT 84
Query: 112 XXXXXXXKRWGIGEEQMNKGIQFIMSNFASVTDEK-QQTPIGFDIIFPGMIECAQDLNLN 170
+ W + Q NKGI F N + DE + PIGF++ FP ++E A+ +N++
Sbjct: 85 LACVVALRSWNLFPHQCNKGITFFRENIGKLEDENDEHMPIGFEVAFPSLLEIARGINID 144
Query: 171 LPLRSSDINAMLERRHLELNR---NYTAGRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSL 227
+P S + + ++ L+L R L + EG+ L DWE ++K Q ++GS
Sbjct: 145 VPYDSPVLKDIYAKKELKLTRIPKEIMHKIPTTLLHSLEGMRDL-DWEKLLKLQSQDGSF 203
Query: 228 FNSPSTTAAALTHFHNAGCLHYLSSLLEKFGNAVPTVHPLDIYINLTMVESLESLGVDRH 287
SPS+TA A ++ CL YL + +++F VP V P+D++ ++ +V+ L+ LG+ R+
Sbjct: 204 LFSPSSTAFAFMQTRDSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRY 263
Query: 288 FRTEIKRVLDETYRFWLQ-----GEEEIFLDLTTCAMAFRLLRLNGYDVSSDPLTQFAED 342
F EIK LD +R+W D+ AMAFRLLR +GY VS+D F ++
Sbjct: 264 FEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKE 323
Query: 343 NQFCNSLKGYLKDISAVLELYRASQITIYPDESVLEK-QQFWTSHFLKQELSSGSIHSNR 401
+F + + ++ + LYRASQ+ +P E +L+ ++F ++ L++ I
Sbjct: 324 GEFFCFVGQSNQAVTGMFNLYRASQLA-FPREEILKNAKEFSYNYLLEKREREELIDKWI 382
Query: 402 FSQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDN-MRILKTSYCSLNIGNEYFQKLA 460
+++ ++ AL+ P++ +L R+ R I+ Y +N + I KT Y + N + +LA
Sbjct: 383 IMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELA 442
Query: 461 VDDFNICQSMHIEELKHLERWVVEKRLDKLKFARQKQTYCYFSVAATLFSPELSDARMSW 520
D+N CQ+ H E ++W E RL + R + CY+ AAT+F E S RM W
Sbjct: 443 KQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYLAAATIFESERSHERMVW 502
Query: 521 AKNAVLTTIV 530
AK++VL +
Sbjct: 503 AKSSVLVKAI 512
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 147/513 (28%), Positives = 231/513 (45%), Gaps = 50/513 (9%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQG--EEEIFLDLTTCAMAFRLLRLNGYD 330
L ++++++ LG+ F ++I+R LD RF G + L A++FRLLR +G++
Sbjct: 68 LELIDNVQRLGLGYRFESDIRRALD---RFVSSGGFDGVTKTSLHATALSFRLLRQHGFE 124
Query: 331 VSSDPLTQFAEDNQFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQ 390
VS + + F + N N L+ +D A+L LY AS + + + + E + F SH +
Sbjct: 125 VSQEAFSGFKDQN--GNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHL--K 180
Query: 391 ELSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDNMRILKTSYCSLN 450
ELS I + ++ QV AL+ P H +RL +I +Y
Sbjct: 181 ELSEEKI-----GKELAEQVNHALELPLHRRTQRLEAVWSIE------------AYRKKE 223
Query: 451 IGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRL-DKLKFARQKQTYCYFSVAATLF 509
N+ +LA+ D+N+ QS++ +L+ RW L KL FAR + ++ F
Sbjct: 224 DANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAF 283
Query: 510 SPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVEII 569
P+ SD R S AK TI+DD YD+ G+ RWDV A N + +++
Sbjct: 284 EPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDV-NAINDLPDYMKLC 342
Query: 570 FSALRSTICEFGDKTLTWQGRNATSHIVET----C---------LRNKSVPTLDEYMENA 616
F AL +TI E L +G N ++ + C L NKS PT D+Y NA
Sbjct: 343 FLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNA 402
Query: 617 YASFALGPIIFPAVYF--VGPKLSEEVVRDPEFHNLYKLVSTCGRLLNDIQGFKRESKEG 674
+ S + GP+ YF V EE+ ++H++ S RL ND+ E G
Sbjct: 403 WKS-SSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARG 461
Query: 675 KL-NSVSLQMTYSDGNMTEVEAIEKIKVVIKSTXXXXXXXXXXXXGSIVPRACKDLIWKM 733
+ NSVS M ++E A E + +I T GS+ + + +
Sbjct: 462 ETANSVSCYMRTK--GISEELATESVMNLIDET--WKKMNKEKLGGSLFAKPFVETAINL 517
Query: 734 SKVLHLFYMNTDGFSSNVEMV-KAVSEVVYEPI 765
++ H Y N D +S E+ K V V+ EPI
Sbjct: 518 ARQSHCTYHNGDAHTSPDELTRKRVLSVITEPI 550
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 125/519 (24%), Positives = 233/519 (44%), Gaps = 52/519 (10%)
Query: 272 NLTMVESLESLGVDRHFRTEIKRVLDETY---RFWLQGEEEIFLDLTTCAMAFRLLRLNG 328
L +++ L+ +G+ HF+ E K +L Y ++ + DL + ++AFRLLR +G
Sbjct: 53 QLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHG 112
Query: 329 YDVSSDPLTQFA-EDNQFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHF 387
+ V+ + F E+ +F SL D +L+LY AS + E+ LE + + + F
Sbjct: 113 FQVAQEVFDSFKNEEGEFKESLS---DDTRGLLQLYEAS-FLLTEGETTLESAREFATKF 168
Query: 388 LKQELSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDNMRILKTSYC 447
L+++++ G + + + +++ +L P H ++R N + Y
Sbjct: 169 LEEKVNEGGVDGD-----LLTRIAYSLDIPLHWRIKR------------PNAPVWIEWYR 211
Query: 448 SLNIGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKR-LDKLKFARQKQTYCYFSVAA 506
N +LA+ D NI Q+ EELK RW ++KL FAR + CYF
Sbjct: 212 KRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTG 271
Query: 507 TLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQV 566
+ + + AR+ K L T++DD YD+ G+ RWD+ + + + +
Sbjct: 272 IIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDI-NSIDQLPDYM 330
Query: 567 EIIFSALRSTICEFGDKTLTWQGRNATSHIVETC--LRNKSV-----------PTLDEYM 613
++ F AL + + + + +G N ++ ++ L +K + P+L+EY+
Sbjct: 331 QLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYL 390
Query: 614 ENAYASFALGPIIFPAVYF-VGPKLSEEVVRDP-EFHNLYKLVSTCGRLLNDIQGFKRES 671
EN++ S + GP + ++F V ++E V ++H+L + S RL +D+ E
Sbjct: 391 ENSWQSIS-GPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEV 449
Query: 672 KEGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIKSTXXXXXXXXXXXXGSIVPRACKDLIW 731
G + SLQ SD N +E EA + +K +I KD I
Sbjct: 450 SRGDVPK-SLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDSPF----GKDFIG 504
Query: 732 ---KMSKVLHLFYMNTDGFSSNVEMV-KAVSEVVYEPIS 766
+ ++ L Y N DG + ++ + ++ ++EP +
Sbjct: 505 CAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 120/455 (26%), Positives = 209/455 (45%), Gaps = 68/455 (14%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332
L +++++E LG+ HF EI +LD+ Y + DL T A+ FRLLR +G+++S
Sbjct: 68 LNLIDTIERLGISYHFEKEIDDILDQIY-----NQNSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 333 SDPLTQFAEDN-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQE 391
+ ++F ++N +F SL D+ +L LY AS + + D+ + + F T H
Sbjct: 123 PEIFSKFQDENGKFKESLAS---DVLGLLNLYEASHVRTHADDILEDALAFSTIH----- 174
Query: 392 LSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNIN-LYNVDNMRILKTSYCSLN 450
L S + H + QV AL+ H + R+ R I+ +Y+ + +
Sbjct: 175 LESAAPH---LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK---------- 221
Query: 451 IGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLD---KLKFARQKQTYCYFSVAAT 507
N + A DFN+ Q +H +EL + RW K LD L +AR + CYFS
Sbjct: 222 --NNVLLRFAKLDFNLLQMLHKQELAQVSRWW--KDLDFVTTLPYARDRVVECYFSALGV 277
Query: 508 LFSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVE 567
F P+ S AR+ K + +IVDD +D G+ RWD+ E + ++
Sbjct: 278 YFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR-LPDYMK 336
Query: 568 IIFSALRSTICEFGDKTLTWQGRNATSHIV-------ETCLRNKSV----------PTLD 610
I + A+ ++ +K L+ GR SHIV + +RN +V P +
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGR---SHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVS 392
Query: 611 EYMENAYASFALGPIIFPAVYFVGPKLSEE-----VVRDPEFHNLYKLVSTCGRLLNDIQ 665
EY+ NA A+ + + ++G K + E + ++P+ L V C R+++D
Sbjct: 393 EYLSNALATTTYYYLATTS--YLGMKSATEQDFEWLSKNPKI--LEASVIIC-RVIDDTA 447
Query: 666 GFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIK 700
++ E G++ + ++ D ++ EA+ K +
Sbjct: 448 TYEVEKSRGQI-ATGIECCMRDYGISTKEAMAKFQ 481
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 168/365 (46%), Gaps = 57/365 (15%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332
L +++++E LG+ HF EI +LD+ Y + DL T A+ FRLLR +G+++S
Sbjct: 68 LNLIDTIERLGISYHFEKEIDDILDQIY-----NQNSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 333 SDPLTQFAEDN-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQE 391
+ ++F ++N +F SL D+ +L LY AS + + D+ + + F T H
Sbjct: 123 PEIFSKFQDENGKFKESLAS---DVLGLLNLYEASHVRTHADDILEDALAFSTIH----- 174
Query: 392 LSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNIN-LYNVDNMRILKTSYCSLN 450
L S + H + QV AL+ H + R+ R I+ +Y+ + +
Sbjct: 175 LESAAPH---LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK---------- 221
Query: 451 IGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLD---KLKFARQKQTYCYFSVAAT 507
N + A DFN+ Q +H +EL + RW K LD L +AR + CYFS
Sbjct: 222 --NNVLLRFAKLDFNLLQMLHKQELAQVSRWW--KDLDFVTTLPYARDRVVECYFSALGV 277
Query: 508 LFSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVE 567
F P+ S AR+ K + +IVDD +D G+ RWD+ E + ++
Sbjct: 278 YFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR-LPDYMK 336
Query: 568 IIFSALRSTICEFGDKTLTWQGRNATSHIV-------ETCLRNKSV----------PTLD 610
I + A+ ++ +K L+ GR SHIV + +RN +V P +
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGR---SHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVS 392
Query: 611 EYMEN 615
EY+ N
Sbjct: 393 EYLSN 397
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 208/455 (45%), Gaps = 68/455 (14%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332
L +++++E LG+ HF EI +LD+ Y + DL T A+ FRLLR +G+++S
Sbjct: 70 LNLIDTIERLGISYHFEKEIDDILDQIY-----NQNSNCNDLCTSALQFRLLRQHGFNIS 124
Query: 333 SDPLTQFAEDN-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQE 391
+ ++F ++N +F SL D+ +L LY AS + + D+ + + F T H
Sbjct: 125 PEIFSKFQDENGKFKESLAS---DVLGLLNLYEASHVRTHADDILEDALAFSTIH----- 176
Query: 392 LSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNIN-LYNVDNMRILKTSYCSLN 450
L S + H + QV AL+ H + R+ R I+ +Y+ + +
Sbjct: 177 LESAAPH---LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK---------- 223
Query: 451 IGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLD---KLKFARQKQTYCYFSVAAT 507
N + A DFN+ Q +H +EL + RW K LD L +AR + CYF
Sbjct: 224 --NNVLLRFAKLDFNLLQMLHKQELAQVSRWW--KDLDFVTTLPYARDRVVECYFWALGV 279
Query: 508 LFSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVE 567
F P+ S AR+ K + +IVDD +D G+ RWD+ E + ++
Sbjct: 280 YFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR-LPDYMK 338
Query: 568 IIFSALRSTICEFGDKTLTWQGRNATSHIV-------ETCLRNKSV----------PTLD 610
I + A+ ++ +K L+ GR SHIV + +RN +V P +
Sbjct: 339 ISYKAILDLYKDY-EKELSSAGR---SHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVS 394
Query: 611 EYMENAYASFALGPIIFPAVYFVGPKLSEE-----VVRDPEFHNLYKLVSTCGRLLNDIQ 665
EY+ NA A+ + + ++G K + E + ++P+ L V C R+++D
Sbjct: 395 EYLSNALATTTYYYLATTS--YLGMKSATEQDFEWLSKNPKI--LEASVIIC-RVIDDTA 449
Query: 666 GFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIK 700
++ E G++ + ++ D ++ EA+ K +
Sbjct: 450 TYEVEKSRGQI-ATGIECCMRDYGISTKEAMAKFQ 483
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 208/455 (45%), Gaps = 68/455 (14%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332
L +++++E LG+ HF EI +LD+ Y + DL T A+ FRLLR +G+++S
Sbjct: 68 LNLIDTIERLGISYHFEKEIDDILDQIY-----NQNSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 333 SDPLTQFAEDN-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQE 391
+ ++F ++N +F SL D+ +L LY AS + + D+ + + F T H
Sbjct: 123 PEIFSKFQDENGKFKESLAS---DVLGLLNLYEASHVRTHADDILEDALAFSTIH----- 174
Query: 392 LSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNIN-LYNVDNMRILKTSYCSLN 450
L S + H + QV AL+ H + R+ R I+ +Y+ + +
Sbjct: 175 LESAAPH---LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK---------- 221
Query: 451 IGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLD---KLKFARQKQTYCYFSVAAT 507
N + A DFN+ Q +H +EL + RW K LD L +AR + CYF
Sbjct: 222 --NNVLLRFAKLDFNLLQMLHKQELAQVSRWW--KDLDFVTTLPYARDRVVECYFWALGV 277
Query: 508 LFSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVE 567
F P+ S AR+ K + +IVDD +D G+ RWD+ E + ++
Sbjct: 278 YFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR-LPDYMK 336
Query: 568 IIFSALRSTICEFGDKTLTWQGRNATSHIV-------ETCLRNKSV----------PTLD 610
I + A+ ++ +K L+ GR SHIV + +RN +V P +
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGR---SHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVS 392
Query: 611 EYMENAYASFALGPIIFPAVYFVGPKLSEE-----VVRDPEFHNLYKLVSTCGRLLNDIQ 665
EY+ NA A+ + + ++G K + E + ++P+ L V C R+++D
Sbjct: 393 EYLSNALATTTYYYLATTS--YLGMKSATEQDFEWLSKNPKI--LEASVIIC-RVIDDTA 447
Query: 666 GFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIK 700
++ E G++ + ++ D ++ EA+ K +
Sbjct: 448 TYEVEKSRGQI-ATGIECCMRDYGISTKEAMAKFQ 481
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 208/455 (45%), Gaps = 68/455 (14%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332
L +++++E LG+ HF EI +LD+ Y + DL T A+ FRLLR +G+++S
Sbjct: 55 LNLIDTIERLGISYHFEKEIDDILDQIY-----NQNSNCNDLCTSALQFRLLRQHGFNIS 109
Query: 333 SDPLTQFAEDN-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQE 391
+ ++F ++N +F SL D+ +L LY AS + + D+ + + F T H
Sbjct: 110 PEIFSKFQDENGKFKESLAS---DVLGLLNLYEASHVRTHADDILEDALAFSTIH----- 161
Query: 392 LSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNIN-LYNVDNMRILKTSYCSLN 450
L S + H + QV AL+ H + R+ R I+ +Y+ + +
Sbjct: 162 LESAAPH---LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK---------- 208
Query: 451 IGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLD---KLKFARQKQTYCYFSVAAT 507
N + A DFN+ Q +H +EL + RW K LD L +AR + CYF
Sbjct: 209 --NNVLLRFAKLDFNLLQMLHKQELAQVSRWW--KDLDFVTTLPYARDRVVECYFWALGV 264
Query: 508 LFSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVE 567
F P+ S AR+ K + +IVDD +D G+ RWD+ E + ++
Sbjct: 265 YFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR-LPDYMK 323
Query: 568 IIFSALRSTICEFGDKTLTWQGRNATSHIV-------ETCLRNKSV----------PTLD 610
I + A+ ++ +K L+ GR SHIV + +RN +V P +
Sbjct: 324 ISYKAILDLYKDY-EKELSSAGR---SHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVS 379
Query: 611 EYMENAYASFALGPIIFPAVYFVGPKLSEE-----VVRDPEFHNLYKLVSTCGRLLNDIQ 665
EY+ NA A+ + + ++G K + E + ++P+ L V C R+++D
Sbjct: 380 EYLSNALATTTYYYLATTS--YLGMKSATEQDFEWLSKNPKI--LEASVIIC-RVIDDTA 434
Query: 666 GFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIK 700
++ E G++ + ++ D ++ EA+ K +
Sbjct: 435 TYEVEKSRGQI-ATGIECCMRDYGISTKEAMAKFQ 468
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 208/455 (45%), Gaps = 68/455 (14%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332
L +++++E LG+ HF EI +LD+ Y + DL T A+ FRLLR +G+++S
Sbjct: 70 LNLIDTIERLGISYHFEKEIDDILDQIY-----NQNSNCNDLCTSALQFRLLRQHGFNIS 124
Query: 333 SDPLTQFAEDN-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQE 391
+ ++F ++N +F SL D+ +L LY AS + + D+ + + F T H
Sbjct: 125 PEIFSKFQDENGKFKESLAS---DVLGLLNLYEASHVRTHADDILEDALAFSTIH----- 176
Query: 392 LSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNIN-LYNVDNMRILKTSYCSLN 450
L S + H + QV AL+ H + R+ R I+ +Y+ + +
Sbjct: 177 LESAAPH---LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK---------- 223
Query: 451 IGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLD---KLKFARQKQTYCYFSVAAT 507
N + A DFN+ Q +H +EL + RW K LD L +AR + CYF
Sbjct: 224 --NNVLLRFAKLDFNLLQMLHKQELAQVSRWW--KDLDFVTTLPYARDRVVECYFWTLGV 279
Query: 508 LFSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVE 567
F P+ S AR+ K + +IVDD +D G+ RWD+ E + ++
Sbjct: 280 YFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR-LPDYMK 338
Query: 568 IIFSALRSTICEFGDKTLTWQGRNATSHIV-------ETCLRNKSV----------PTLD 610
I + A+ ++ +K L+ GR SHIV + +RN +V P +
Sbjct: 339 ISYKAILDLYKDY-EKELSSAGR---SHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVS 394
Query: 611 EYMENAYASFALGPIIFPAVYFVGPKLSEE-----VVRDPEFHNLYKLVSTCGRLLNDIQ 665
EY+ NA A+ + + ++G K + E + ++P+ L V C R+++D
Sbjct: 395 EYLSNALATTTYYLLATTS--YLGMKSATEQDFEWLSKNPKI--LEASVIIC-RVIDDTA 449
Query: 666 GFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIK 700
++ E G++ + ++ D ++ EA+ K +
Sbjct: 450 TYEVEKSRGQI-ATGIECCMRDYGISTKEAMAKFQ 483
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 167/365 (45%), Gaps = 57/365 (15%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332
L +++++E LG+ HF EI +LD+ Y + DL T A+ FRLLR +G+++S
Sbjct: 68 LNLIDTIERLGISYHFEKEIDDILDQIY-----NQNSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 333 SDPLTQFAEDN-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQE 391
+ ++F ++N +F SL D+ +L LY AS + + D+ + + F T H
Sbjct: 123 PEIFSKFQDENGKFKESLAS---DVLGLLNLYEASHVRTHADDILEDALAFSTIH----- 174
Query: 392 LSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNIN-LYNVDNMRILKTSYCSLN 450
L S + H + QV AL+ H + R+ R I+ +Y+ + +
Sbjct: 175 LESAAPH---LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK---------- 221
Query: 451 IGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLD---KLKFARQKQTYCYFSVAAT 507
N + A DFN+ Q +H +EL + RW K LD L +AR + CYF
Sbjct: 222 --NNVLLRFAKLDFNLLQMLHKQELAQVSRWW--KDLDFVTTLPYARDRVVECYFWALGV 277
Query: 508 LFSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVE 567
F P+ S AR+ K + +IVDD +D G+ RWD+ E + ++
Sbjct: 278 YFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR-LPDYMK 336
Query: 568 IIFSALRSTICEFGDKTLTWQGRNATSHIV-------ETCLRNKSV----------PTLD 610
I + A+ ++ +K L+ GR SHIV + +RN +V P +
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGR---SHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVS 392
Query: 611 EYMEN 615
EY+ N
Sbjct: 393 EYLSN 397
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 128/524 (24%), Positives = 215/524 (41%), Gaps = 60/524 (11%)
Query: 272 NLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIF-------LDLTTCAMAFRLL 324
L ++ L+ LG+ F+ EIK +L Y E + F +DL A+ FRLL
Sbjct: 57 QLELIHDLKYLGLSDFFQDEIKEILGVIY-----NEHKCFHNNEVEKMDLYFTALGFRLL 111
Query: 325 RLNGYDVSSDPLTQFAEDN--QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQF 382
R +G+++S D F + F SL +D +L+LY AS + E LE +
Sbjct: 112 RQHGFNISQDVFNCFKNEKGIDFKASLA---QDTKGMLQLYEAS-FLLRKGEDTLELARE 167
Query: 383 WTSHFLKQELSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDNMRIL 442
+ + L+++L G N +N+ + +L P H ++ + R I+
Sbjct: 168 FATKCLQKKLDEGG---NEIDENLLLWIRHSLDLPLHWRIQSVEARWFID---------- 214
Query: 443 KTSYCSLNIGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRL---DKLKFARQKQTY 499
+Y N +LA +FNI Q+ H +ELK L RW RL +KL F R +
Sbjct: 215 --AYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWW--SRLCFPEKLPFVRDRLVE 270
Query: 500 CYFSVAATLFSP-ELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEA 558
+F A +F P + R A VL T++DD YD+ G+ RWD E
Sbjct: 271 SFFW-AVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESI 329
Query: 559 KNCCSEQVEIIFSALRSTICEFGDKTLTWQG-------RNATSHIVETCLRNKS------ 605
+++ + + + I + L G R + +VE
Sbjct: 330 TR-LPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGY 388
Query: 606 VPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRDP--EFHNLYKLVSTCGRLLND 663
P+LDEY+ A S A II P + + V D ++H++ L RL +D
Sbjct: 389 TPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDD 448
Query: 664 IQGFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIKSTXXXXXXXXXXXXGSIVP 723
+ E G + ++Q + N +E EA+E +K +I+ G P
Sbjct: 449 LGTSYFELARGDVPK-TIQCYMKETNASEEEAVEHVKFLIREA--WKDMNTAIAAGYPFP 505
Query: 724 RACKDLIWKMSKVLHLFYMNTDGFS-SNVEMVKAVSEVVYEPIS 766
+ +V Y++ DGF + + + ++ +++EP +
Sbjct: 506 DGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 117/451 (25%), Positives = 198/451 (43%), Gaps = 44/451 (9%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332
L +++ L LG+ HF EI +L+ Y + +E DL + A+ FRLLR + VS
Sbjct: 87 LELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDER---DLYSTALRFRLLRQYDFSVS 143
Query: 333 SDPLTQF--AEDNQFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQ 390
+ F A+ F SL + D +L+LY AS ++ +E++ + F T K+
Sbjct: 144 QEVFDCFKNAKGTDFKPSL---VDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKR 200
Query: 391 ELSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDNMRILKTSYCSLN 450
L I N+ S +E AL+ P H ++ + N R +Y
Sbjct: 201 VLVDKDI-------NLLSSIERALELPTHWRVQ------------MPNARSFIDAYKRRP 241
Query: 451 IGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRL-DKLKFARQKQTYCYFSVAATLF 509
N +LA DFN+ Q+ +ELK RW L +L F R + CY+ +
Sbjct: 242 DMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVE 301
Query: 510 SPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVEII 569
+ R+ K L T +DD +D+ G+ RWD+E K ++I
Sbjct: 302 RRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQ-LPPYMQIC 360
Query: 570 FSALRSTICEFGDKTLTWQGRNAT------------SHIVETCLRNKS-VPTLDEYMENA 616
+ AL + + E TL +G ++T S+++E K P+L+EYM+N+
Sbjct: 361 YLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNS 420
Query: 617 YASFALGPIIFPAVYFVGPKLSEEVVRD-PEFHNLYKLVSTCGRLLNDIQGFKRESKEGK 675
+ S PI+ + + + EE ++H++ + T RL +D+ E + G
Sbjct: 421 WISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGD 480
Query: 676 LNSVSLQMTYSDGNMTEVEAIEKIKVVIKST 706
+ S+Q ++ N +E EA E ++ +I T
Sbjct: 481 VPK-SVQCYMNEKNASEEEAREHVRSLIDQT 510
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 207/455 (45%), Gaps = 68/455 (14%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332
L +++ +E LG+ HF EI +LD+ Y + DL T A+ FRLLR +G+++S
Sbjct: 68 LNLIDIIERLGISYHFEKEIDEILDQIY-----NQNSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 333 SDPLTQFAEDN-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQE 391
+ ++F ++N +F SL D+ +L LY AS + + D+ + + F T H
Sbjct: 123 PEIFSKFQDENGKFKESLAS---DVLGLLNLYEASHVRTHADDILEDALAFSTIH----- 174
Query: 392 LSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNIN-LYNVDNMRILKTSYCSLN 450
L S + H + QV AL+ H + R+ R I+ +Y+ + +
Sbjct: 175 LESAAPH---LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK---------- 221
Query: 451 IGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLD---KLKFARQKQTYCYFSVAAT 507
N + A DFN+ Q +H +EL + RW K LD L +AR + CYF
Sbjct: 222 --NNVLLRFAKLDFNLLQMLHKQELAQVSRWW--KDLDFVTTLPYARDRVVECYFWALGV 277
Query: 508 LFSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVE 567
F P+ S AR+ K + +IVDD +D G+ RWD+ E + ++
Sbjct: 278 YFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR-LPDYMK 336
Query: 568 IIFSALRSTICEFGDKTLTWQGRNATSHIV-------ETCLRNKSV----------PTLD 610
I + A+ ++ +K L+ GR SHIV + +RN +V P +
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGR---SHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVS 392
Query: 611 EYMENAYASFALGPIIFPAVYFVGPKLSEE-----VVRDPEFHNLYKLVSTCGRLLNDIQ 665
EY+ NA A+ + + ++G K + E + ++P+ L V C R+++D
Sbjct: 393 EYLSNALATTTYYYLATTS--YLGMKSATEQDFEWLSKNPKI--LEASVIIC-RVIDDTA 447
Query: 666 GFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIK 700
++ E G++ + ++ D ++ EA+ K +
Sbjct: 448 TYEVEKSRGQI-ATGIECCMRDYGISTKEAMAKFQ 481
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 207/455 (45%), Gaps = 68/455 (14%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332
L +++ +E LG+ HF EI +LD+ Y + DL T A+ FRLLR +G+++S
Sbjct: 68 LNLIDIIERLGISYHFEKEIDEILDQIY-----NQNSNCNDLCTSALQFRLLRQHGFNIS 122
Query: 333 SDPLTQFAEDN-QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQE 391
+ ++F ++N +F SL D+ +L LY AS + + D+ + + F T H
Sbjct: 123 PEIFSKFQDENGKFKESLAS---DVLGLLNLYEASHVRTHADDILEDALAFSTIH----- 174
Query: 392 LSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNIN-LYNVDNMRILKTSYCSLN 450
L S + H + QV AL+ H + R+ R I+ +Y+ + +
Sbjct: 175 LESAAPH---LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK---------- 221
Query: 451 IGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLD---KLKFARQKQTYCYFSVAAT 507
N + A DFN+ Q +H +EL + RW K LD L +AR + CYF
Sbjct: 222 --NNVLLRFAKLDFNLLQMLHKQELAQVSRWW--KDLDFVTTLPYARDRVVECYFWALGV 277
Query: 508 LFSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVE 567
F P+ S AR+ K + +IVDD +D G+ RWD+ E + ++
Sbjct: 278 YFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDR-LPDYMK 336
Query: 568 IIFSALRSTICEFGDKTLTWQGRNATSHIV-------ETCLRNKSV----------PTLD 610
I + A+ ++ +K L+ GR SHIV + +RN +V P +
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGR---SHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVS 392
Query: 611 EYMENAYASFALGPIIFPAVYFVGPKLSEE-----VVRDPEFHNLYKLVSTCGRLLNDIQ 665
EY+ NA A+ + + ++G K + E + ++P+ L V C R+++D
Sbjct: 393 EYLSNALATTTYYYLATTS--YLGMKSATEQDFEWLSKNPKI--LEASVIIC-RVIDDTA 447
Query: 666 GFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIK 700
++ E G++ + ++ D ++ EA+ K +
Sbjct: 448 TYEVEKSRGQI-ATGIECCMRDYGISTKEAMAKFQ 481
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 126/524 (24%), Positives = 225/524 (42%), Gaps = 72/524 (13%)
Query: 273 LTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332
L ++S++ LGV HF EI+ L+ Y E DL T ++ FRLLR +GY+VS
Sbjct: 74 LAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAEN----DLYTTSIRFRLLREHGYNVS 129
Query: 333 SDPLTQFA-EDNQFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQE 391
D +F E F +S+ D+ +LELY+AS + ++ E +L++ +T+H L
Sbjct: 130 CDVFNKFKDEQGNFKSSVTS---DVRGLLELYQASYLRVH-GEDILDEAISFTTHHLSLA 185
Query: 392 LSSGSIHSNRFSQNVSSQVEDALKFPYHVNLERLAHRRNINLYNVDNMRILKTSYCSLNI 451
++S +S +V ALK L R+ R +++Y +
Sbjct: 186 VAS-------LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQ------------DIES 226
Query: 452 GNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLD---KLKFARQKQTYCYFSVAATL 508
N+ + A DFN+ Q +H +EL + RW K LD KL +AR + YF ++
Sbjct: 227 HNKALLEFAKIDFNMLQFLHRKELSEICRWW--KDLDFQRKLPYARDRVVEGYFWISGVY 284
Query: 509 FSPELSDARMSWAKNAVLTTIVDDFYDLGGSXXXXXXXXXXXXRWDVEEAKNCCSEQVEI 568
F P+ S R K + +IVDD YD + RWD++ C E E
Sbjct: 285 FEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIK----CIDEIPEY 340
Query: 569 ----------IFSALRSTICEFGDKTLTWQGRN-----ATSHIVET--CLRNKSVPTLDE 611
++ + + E G + +N A S++VE L+N P+ +E
Sbjct: 341 MKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYK-PSFEE 399
Query: 612 YMENAYASFALGPIIFPAVYFVG------PKLSEEVVRDPEFHNLYKLVSTCGRLLNDIQ 665
+ NA + G + FVG P+ + DP+ + + + R ++D+
Sbjct: 400 FKANALPT--CGYAMLAITSFVGMGDIVTPETFKWAASDPK---IIQASTIICRFMDDVA 454
Query: 666 GFK-RESKEGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIKSTXXXXXXXXXXXXGSIVPR 724
K + +E +++ M + +T EA + ++S + +P
Sbjct: 455 EHKFKHRREDDCSAIECYM--EEYGVTAQEAYDVFNKHVESA--WKDLNQEFLKPTEMPT 510
Query: 725 ACKDLIWKMSKVLHLFYMNTDGFSSNVEMVK-AVSEVVYEPISV 767
+ +++V+ + Y DG++ + K ++ ++ EPI++
Sbjct: 511 EVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 257 FGNAVPTVHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLT 315
FG+ + T P Y+ L + + +S RHF +I V +ET+ F L +E L++T
Sbjct: 35 FGDMLDTPDP---YVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEIT 90
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 257 FGNAVPTVHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLT 315
FG+ + T P Y+ L + + +S RHF +I V +ET+ F L +E L++T
Sbjct: 20 FGDMLDTPDP---YVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEIT 75
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 257 FGNAVPTVHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLT 315
FG+ + T P Y+ L + + +S RHF +I V +ET+ F L +E L++T
Sbjct: 35 FGDMLDTPDP---YVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEIT 90
>pdb|4EBA|A Chain A, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|B Chain B, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|C Chain C, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|D Chain D, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|E Chain E, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|F Chain F, Crystal Structure Of The Rna14-Rna15 Complex
Length = 645
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 571 SALRSTICEFGDKTLTWQGRNATSHIVETCLRNKSVPTLDEYMENAYASFALG 623
S L C + + QG A+ I C R K + T D Y+ENAY + +
Sbjct: 397 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 449
>pdb|4E85|A Chain A, Crystal Structure Of Hat Domain Of Rna14
pdb|4E85|B Chain B, Crystal Structure Of Hat Domain Of Rna14
Length = 678
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 571 SALRSTICEFGDKTLTWQGRNATSHIVETCLRNKSVPTLDEYMENAYASFALG 623
S L C + + QG A+ I C R K + T D Y+ENAY + +
Sbjct: 430 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 482
>pdb|4E6H|A Chain A, Crystal Structure Of The Hat Domain Of K. Lactis Rna14
Length = 679
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 571 SALRSTICEFGDKTLTWQGRNATSHIVETCLRNKSVPTLDEYMENAYASFALG 623
S L C + + QG A+ I C R K + T D Y+ENAY + +
Sbjct: 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 79 QCINWLLDNQVNDGSWGLHNRPSWL 103
+ ++WLL+ Q DGSWG +P W
Sbjct: 243 RALDWLLERQAGDGSWG-GIQPPWF 266
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 79 QCINWLLDNQVNDGSWGLHNRPSWL 103
+ ++WLL+ Q DGSWG +P W
Sbjct: 243 RALDWLLERQAGDGSWG-GIQPPWF 266
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 79 QCINWLLDNQVNDGSWGLHNRPSWL 103
+ ++WLL+ Q DGSWG +P W
Sbjct: 243 RALDWLLERQAGDGSWG-GIQPPWF 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,059,211
Number of Sequences: 62578
Number of extensions: 823185
Number of successful extensions: 2067
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1952
Number of HSP's gapped (non-prelim): 41
length of query: 769
length of database: 14,973,337
effective HSP length: 106
effective length of query: 663
effective length of database: 8,340,069
effective search space: 5529465747
effective search space used: 5529465747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)