Query 004193
Match_columns 769
No_of_seqs 307 out of 940
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 19:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02279 ent-kaur-16-ene synth 100.0 2E-213 4E-218 1854.9 70.0 738 27-768 25-779 (784)
2 PLN02592 ent-copalyl diphospha 100.0 9E-193 2E-197 1671.4 68.2 701 34-766 71-800 (800)
3 cd00684 Terpene_cyclase_plant_ 100.0 4E-125 8E-130 1088.9 43.1 476 265-764 49-542 (542)
4 PF01397 Terpene_synth: Terpen 100.0 4.2E-43 9.1E-48 349.7 14.8 174 229-414 9-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 2.3E-40 5E-45 349.8 16.1 253 456-711 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 1.5E-38 3.2E-43 338.4 24.5 268 470-741 1-284 (284)
7 cd00687 Terpene_cyclase_nonpla 99.9 2.1E-26 4.6E-31 248.5 15.4 235 477-714 18-265 (303)
8 PLN02150 terpene synthase/cycl 99.9 5.5E-27 1.2E-31 210.5 7.5 93 671-767 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.6 1.2E-15 2.6E-20 155.5 6.5 219 503-735 2-243 (243)
10 PF13243 Prenyltrans_1: Prenyl 98.0 1.6E-05 3.5E-10 72.6 7.0 81 52-138 21-105 (109)
11 cd02889 SQCY Squalene cyclase 97.9 0.00041 8.8E-09 76.4 17.6 54 79-139 3-59 (348)
12 PF13243 Prenyltrans_1: Prenyl 97.7 1.1E-05 2.3E-10 73.8 0.4 55 79-139 3-59 (109)
13 TIGR01787 squalene_cyclas squa 97.7 0.0061 1.3E-07 72.8 23.2 304 76-392 47-473 (621)
14 cd02892 SQCY_1 Squalene cyclas 97.6 0.03 6.5E-07 67.3 28.5 248 77-330 48-390 (634)
15 TIGR01507 hopene_cyclase squal 97.5 0.015 3.3E-07 69.5 23.2 289 34-329 15-395 (635)
16 TIGR03463 osq_cycl 2,3-oxidosq 97.4 0.00059 1.3E-08 81.5 10.2 103 36-138 478-595 (634)
17 TIGR03463 osq_cycl 2,3-oxidosq 97.3 0.021 4.7E-07 68.4 22.4 57 78-138 45-103 (634)
18 TIGR01787 squalene_cyclas squa 97.1 0.019 4.2E-07 68.6 19.2 241 75-330 227-564 (621)
19 cd02892 SQCY_1 Squalene cyclas 97.1 0.038 8.2E-07 66.4 20.8 238 78-330 239-580 (634)
20 PF13249 Prenyltrans_2: Prenyl 96.9 0.00045 9.8E-09 63.2 2.3 79 54-138 20-104 (113)
21 TIGR01507 hopene_cyclase squal 96.9 0.046 1E-06 65.5 19.0 240 78-330 247-574 (635)
22 PF13249 Prenyltrans_2: Prenyl 96.7 0.0018 3.8E-08 59.2 4.2 54 81-140 1-56 (113)
23 cd00688 ISOPREN_C2_like This g 96.7 0.049 1.1E-06 57.1 15.8 237 53-326 23-299 (300)
24 PLN03012 Camelliol C synthase 96.4 0.011 2.3E-07 71.4 9.5 102 36-137 591-712 (759)
25 cd02889 SQCY Squalene cyclase 96.3 0.011 2.4E-07 65.0 7.9 104 36-139 192-310 (348)
26 cd02890 PTase Protein prenyltr 96.2 0.14 3.1E-06 55.0 16.0 59 76-138 48-110 (286)
27 cd02897 A2M_2 Proteins similar 96.2 0.014 3E-07 63.1 8.0 86 54-141 77-175 (292)
28 PLN02993 lupeol synthase 96.1 0.02 4.3E-07 69.3 9.2 103 36-138 591-713 (763)
29 cd02896 complement_C3_C4_C5 Pr 96.0 0.014 3E-07 63.4 7.3 88 52-141 76-185 (297)
30 cd00688 ISOPREN_C2_like This g 95.8 0.015 3.2E-07 61.0 6.0 107 34-140 51-174 (300)
31 cd02891 A2M_like Proteins simi 95.5 0.033 7.2E-07 59.3 7.6 107 35-141 49-173 (282)
32 PLN03012 Camelliol C synthase 95.3 0.025 5.4E-07 68.3 6.2 56 78-138 593-651 (759)
33 PF00432 Prenyltrans: Prenyltr 94.8 0.038 8.2E-07 42.5 3.7 38 78-119 4-41 (44)
34 cd00686 Terpene_cyclase_cis_tr 94.8 0.31 6.6E-06 53.5 11.9 182 519-718 88-280 (357)
35 PLN02993 lupeol synthase 94.4 0.063 1.4E-06 65.1 6.3 56 78-138 593-651 (763)
36 PF07678 A2M_comp: A-macroglob 93.9 0.058 1.3E-06 57.1 4.3 92 51-142 21-129 (246)
37 PLN03201 RAB geranylgeranyl tr 93.0 3.4 7.5E-05 45.5 16.3 208 77-330 58-294 (316)
38 cd02890 PTase Protein prenyltr 92.7 0.27 5.8E-06 52.9 7.0 100 35-139 98-207 (286)
39 PF06330 TRI5: Trichodiene syn 92.3 0.73 1.6E-05 51.3 9.8 180 511-717 79-279 (376)
40 COG1689 Uncharacterized protei 91.6 4.3 9.3E-05 42.0 13.5 234 79-365 10-264 (274)
41 cd02893 FTase Protein farnesyl 90.6 1.4 3E-05 48.1 9.8 210 78-326 50-298 (299)
42 cd02894 GGTase-II Geranylgeran 90.1 18 0.00038 39.2 17.8 207 78-326 52-286 (287)
43 cd02895 GGTase-I Geranylgerany 89.9 15 0.00033 40.2 17.3 212 78-326 52-306 (307)
44 cd02894 GGTase-II Geranylgeran 86.9 1.8 4E-05 46.8 7.6 95 37-138 102-208 (287)
45 cd02891 A2M_like Proteins simi 85.9 1.9 4E-05 45.9 6.9 58 79-139 53-114 (282)
46 cd02897 A2M_2 Proteins similar 85.8 4 8.8E-05 44.0 9.5 108 215-329 56-194 (292)
47 TIGR02474 pec_lyase pectate ly 84.1 1.2 2.6E-05 48.2 4.4 58 77-137 69-148 (290)
48 KOG0497 Oxidosqualene-lanoster 70.5 5.7 0.00012 47.4 4.9 51 79-137 593-649 (760)
49 cd02896 complement_C3_C4_C5 Pr 67.9 22 0.00048 38.6 8.6 117 214-336 58-211 (297)
50 cd02895 GGTase-I Geranylgerany 57.4 33 0.00073 37.6 7.7 98 37-138 114-228 (307)
51 PLN03201 RAB geranylgeranyl tr 56.6 15 0.00032 40.6 4.7 81 37-121 106-194 (316)
52 PF00494 SQS_PSY: Squalene/phy 55.3 1.5E+02 0.0034 31.2 12.2 214 499-734 6-238 (267)
53 KOG0367 Protein geranylgeranyl 53.9 1.8E+02 0.004 31.8 12.0 128 199-328 162-320 (347)
54 KOG0366 Protein geranylgeranyl 53.2 3.3E+02 0.0071 29.5 14.9 208 78-330 69-304 (329)
55 PLN02592 ent-copalyl diphospha 47.8 73 0.0016 39.6 9.1 72 217-288 124-212 (800)
56 KOG0497 Oxidosqualene-lanoster 43.7 34 0.00075 41.1 5.2 61 77-137 640-711 (760)
57 cd02893 FTase Protein farnesyl 38.7 4.5E+02 0.0097 28.7 12.7 107 245-357 3-128 (299)
58 COG3636 Predicted transcriptio 38.7 1.6E+02 0.0035 26.9 7.4 75 227-332 16-93 (100)
59 PF09492 Pec_lyase: Pectic aci 35.7 49 0.0011 36.1 4.6 21 77-97 64-84 (289)
60 cd00683 Trans_IPPS_HH Trans-Is 35.2 5.6E+02 0.012 27.0 16.5 202 500-735 13-237 (265)
61 PLN02710 farnesyltranstransfer 35.0 67 0.0015 37.1 5.7 57 78-138 95-155 (439)
62 PF09282 Mago-bind: Mago bindi 31.3 7.2 0.00016 27.0 -1.6 14 84-97 5-18 (27)
63 PRK06294 coproporphyrinogen II 27.9 2.6E+02 0.0057 31.4 9.0 54 274-339 104-164 (370)
64 TIGR03464 HpnC squalene syntha 26.8 7.9E+02 0.017 26.1 15.6 106 500-622 7-120 (266)
65 KOG0366 Protein geranylgeranyl 26.8 1.1E+02 0.0023 33.0 5.0 95 33-138 64-174 (329)
66 PLN02279 ent-kaur-16-ene synth 26.7 1.9E+02 0.0041 36.0 8.1 126 217-349 82-232 (784)
67 KOG1719 Dual specificity phosp 26.7 33 0.00072 33.9 1.3 39 673-712 120-165 (183)
68 PF07678 A2M_comp: A-macroglob 24.9 62 0.0013 34.1 3.1 34 77-121 211-244 (246)
69 KOG0365 Beta subunit of farnes 23.6 1.2E+02 0.0027 33.7 5.0 48 79-130 124-173 (423)
70 PRK05628 coproporphyrinogen II 23.6 3.6E+02 0.0078 30.2 9.1 54 274-339 109-169 (375)
71 PRK07379 coproporphyrinogen II 21.6 4.3E+02 0.0094 30.0 9.3 54 274-339 116-176 (400)
72 TIGR03486 cas_csx13_C CRISPR-a 20.7 2.5E+02 0.0055 27.7 6.0 69 540-613 32-125 (152)
No 1
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=2e-213 Score=1854.87 Aligned_cols=738 Identities=71% Similarity=1.136 Sum_probs=704.4
Q ss_pred CcccccchhhHHHHHHHHHHHhcCCCcCCCcchhhhhccccCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCccchh
Q 004193 27 GTEAKTNNLCFQRTKERTEKMFDKIELSVSPYDTAWVAMVPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKD 106 (769)
Q Consensus 27 ~~~~~~~~~~~~~~~~~i~~~~~~g~~s~S~YDTAwva~vp~~~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d 106 (769)
+......+..+++++++||+||+..++|||+||||||||||+++|+++|||||||+|||+||++|||||.++.++++.+|
T Consensus 25 ~~~~~~~~~~~~~~~~~i~~~l~~~e~s~s~YDTAWvamv~~~~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D 104 (784)
T PLN02279 25 WTQTRANNVSFEGTKERIKKMFDKVELSVSSYDTAWVAMVPSPNSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKD 104 (784)
T ss_pred cccccCccccchhHHHHHHHHhccCcCCCchhhhHHHHhcccCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHH
Confidence 33344456778999999999999889999999999999999999999999999999999999999999987666788999
Q ss_pred HHhhhHHHHHHHHhhcCChHHHHHHHHHHHhccccccCccCCCCceEEEehhhHHHHHHHcCCCCCCCchhHHHHHHHhH
Q 004193 107 AVLCTLACVLALKRWGIGEEQMNKGIQFIMSNFASVTDEKQQTPIGFDIIFPGMIECAQDLNLNLPLRSSDINAMLERRH 186 (769)
Q Consensus 107 ~l~~Tla~vlAL~~w~~~~~~i~~g~~fl~~~~~~~~~~~~~~~vgfeii~P~ll~~a~~~gl~~~~~~~~~~~l~~~r~ 186 (769)
||+|||||||||++||+++.+|+||++||++|++.+.|+++++|||||||||+||++|+++||+|||+++.++.|+++|+
T Consensus 105 ~ll~TlAcvlAL~~w~~~~~~~~~gl~fi~~n~~~~~d~~~~~pvGfei~fP~ll~~a~~~gl~~~~~~~~l~~~~~~r~ 184 (784)
T PLN02279 105 ALSSTLASILALKKWGVGEEQINKGLQFIELNSASVTDEKQHKPIGFDIIFPGMIEYAKDLDLNLPLGSEVVDAMLHKRD 184 (784)
T ss_pred hhHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHhhcccccCCCceEEEehHHHHHHHHHcCCCCCCChHHHHHHHHhhh
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHhcccc---CCCCchhHHHHHhhccCCcchHHHhhccccCCCcccChhhHHHHHhccCCcchHHHHHHHHHHhCCCCCC
Q 004193 187 LELNRNY---TAGRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAALTHFHNAGCLHYLSSLLEKFGNAVPT 263 (769)
Q Consensus 187 ~kL~~~~---~~~~p~~llhslE~~~~~~d~~~v~~~~~~~GS~~~SPsaTAa~l~~~~d~~~~~YL~~~~~~~~g~VP~ 263 (769)
.||+|++ .++.|++|+||||||++.+||++|+++|++|||||+|||||||||||++|++|++||++++++|+||||+
T Consensus 185 ~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~Gs~~~SPsaTAa~l~~~~~~~~~~yL~~~~~~~~g~vP~ 264 (784)
T PLN02279 185 LDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAAFSHLQNAGCLRYLRSLLQKFGNAVPT 264 (784)
T ss_pred HHHhhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCCCCcccCcHHHHHHHHccCChHHHHHHHHHHHhcCCCCCC
Confidence 9999999 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHcCCcccchhhhcccccC
Q 004193 264 VHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVSSDPLTQFAEDN 343 (769)
Q Consensus 264 ~yP~~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FrlLR~~Gy~VS~dvf~~F~~~g 343 (769)
+||+++||++|+||+|+||||+|||++||+++|+.+|++|.+++++...|+++|||+|||||||||+||||+|++|++++
T Consensus 265 ~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~~ 344 (784)
T PLN02279 265 VYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDH 344 (784)
T ss_pred CCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCCc
Confidence 99999999999999999999999999999999999999997655667789999999999999999999999999999777
Q ss_pred CccccccccccchHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhccCCCCCCCCCCchHHHHHHhccCCcccchh
Q 004193 344 QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQELSSGSIHSNRFSQNVSSQVEDALKFPYHVNLE 423 (769)
Q Consensus 344 ~F~~~~~e~~~dv~~lL~Ly~As~l~~~~gE~iL~ea~~fs~~~L~~~~~~~~~~dw~~~~~l~~eV~~aL~~P~~~~l~ 423 (769)
|++++++..+|++|||+||||||+++ |||+|||+|+.||++||++.++++.+.|-.+.++|++||+|||++|||++||
T Consensus 345 -F~~~l~~~~~dv~gmL~LY~AS~l~~-~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~ 422 (784)
T PLN02279 345 -FSDSLGGYLKDTGAVLELFRASQISY-PDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLE 422 (784)
T ss_pred -ccchhcccchhhHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCcc
Confidence 99999999999999999999999999 9999999999999999999987665555456789999999999999999999
Q ss_pred hhHHhhhhhhhcccchhhhhccccccCcCcHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCcchhhhHhHHHHHHH
Q 004193 424 RLAHRRNINLYNVDNMRILKTSYCSLNIGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLDKLKFARQKQTYCYFS 503 (769)
Q Consensus 424 Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAklDFn~~Q~~hq~El~~l~rWwke~~l~~l~faRdrlve~Yf~ 503 (769)
|||||+||++|+++++|||||+||||+++|++||||||+|||+||++||+||++++|||+++||.+|||+|||++|||||
T Consensus 423 RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L~~L~faRdr~ve~Yf~ 502 (784)
T PLN02279 423 RLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRLDKLKFARQKLAYCYFS 502 (784)
T ss_pred HHHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCCccCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccCCCchhHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHhhhcCcch-hccCCChhHHHHHHHHHhhHHHHHH
Q 004193 504 VAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSEEELLNLIDLLERWDVEE-AKNCCSEQVEIIFSALRSTICEFGD 582 (769)
Q Consensus 504 aaa~~fEPe~s~~Rl~~aK~~~l~tviDD~fD~~gt~eEl~~ft~aierWD~~~-~~~l~peymk~~f~aL~~~~~ei~~ 582 (769)
++|++||||||.+|++|||+++|++++||+||+|||+|||++||+||+|||.++ ++.+ |+|||+||.+|++++||++.
T Consensus 503 aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~l-peymki~f~aL~~t~nei~~ 581 (784)
T PLN02279 503 AAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFC-SEQVEIIFSALRSTISEIGD 581 (784)
T ss_pred HHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999984 4677 99999999999999999999
Q ss_pred HHhhhcccchhHHHHHHHH-------------hCCCCCChhhhhhhhccccchhhhHHHHhhhcCCCCchhhhcCccchh
Q 004193 583 KTLTWQGRNATSHIVETCL-------------RNKSVPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRDPEFHN 649 (769)
Q Consensus 583 ~~~~~qgr~v~~yl~e~W~-------------~~g~vPt~eEYl~~a~vS~g~~~~~l~~~~~~G~~l~~e~~~~~~~~~ 649 (769)
++.+.|||++++|++++|. ++||+||+||||+|+.+|+|++++++.+++++|+.+|+++++|++|++
T Consensus 582 ~~~~~qGr~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~~~~~~ 661 (784)
T PLN02279 582 KAFTWQGRNVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDSPELHK 661 (784)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhCcchhH
Confidence 9999999999999988765 789999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHhhhccccccchhhhcCCCCCeeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 004193 650 LYKLVSTCGRLLNDIQGFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKEEGSIVPRACKDL 729 (769)
Q Consensus 650 L~~~~~~I~RL~NDi~S~k~E~~rG~~n~V~cyMke~gg~vS~EeA~~~i~~~ie~~wkeln~~~l~~~~~~vp~~~~~~ 729 (769)
|+++++.||||+|||+||++|+++|++|+|+|||+|+++.+|+|||+++++++|+++||+||++|++++++.+|++||++
T Consensus 662 L~~l~s~I~RLlNDI~S~e~E~~rG~~nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~~~~~~ 741 (784)
T PLN02279 662 LYKLMSTCGRLLNDIRGFKRESKEGKLNAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPRECKDL 741 (784)
T ss_pred HHHHHHHHHHHHHhccccHhHHhCCCcceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999984229999999999999999999999999986544699999999
Q ss_pred HHhhhhhcccccccCCCCCChHHHHHHHHhhhcccccCC
Q 004193 730 IWKMSKVLHLFYMNTDGFSSNVEMVKAVSEVVYEPISVN 768 (769)
Q Consensus 730 ~ln~aR~~~~~Y~~~Dg~~~~~~~k~~I~~ll~epv~~~ 768 (769)
|||++|++++||+++||||.+ +||++|+++|++||++.
T Consensus 742 ~ln~aR~~~~~Y~~~Dgyt~~-~~k~~i~~ll~ePi~l~ 779 (784)
T PLN02279 742 FWKMSKVLHLFYRKDDGFTSN-DMMSLVKSVIYEPVSLQ 779 (784)
T ss_pred HHHHHHhhhhheeCCCCCChH-HHHHHHHHHhccCCcCC
Confidence 999999999999999999976 89999999999999873
No 2
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=9.3e-193 Score=1671.40 Aligned_cols=701 Identities=28% Similarity=0.498 Sum_probs=657.2
Q ss_pred hhhHHHHHHHHHHHhc---CCCcCCCcchhhhhccccCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCccchhHHhh
Q 004193 34 NLCFQRTKERTEKMFD---KIELSVSPYDTAWVAMVPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLC 110 (769)
Q Consensus 34 ~~~~~~~~~~i~~~~~---~g~~s~S~YDTAwva~vp~~~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~ 110 (769)
...+++++++||+||. +|++|||+||||||||||+++|+.+||||+||+|||+||++|||||++.. ++.+|||+|
T Consensus 71 ~~~~~~~~~~ir~~l~~~~~g~~S~S~YDTAWVAmVp~~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~~~--~~~~D~ll~ 148 (800)
T PLN02592 71 SNEIKERVKTVKSMLSSMEDGEISISAYDTAWVALVEDINGSGTPQFPSSLQWIANNQLSDGSWGDAYL--FSAHDRLIN 148 (800)
T ss_pred hhhHHHHHHHHHHHHhcccCCCcCCcHHHhHHHhhcccCCCCCCCCCHHHHHHHHHccCCCCCCCCCCC--cchHHHHHh
Confidence 4557889999999988 79999999999999999999999999999999999999999999998744 789999999
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhccccccCc-cCCCCceEEEehhhHHHHHHHcCCCCCCCchhHHHHHHHhHHHh
Q 004193 111 TLACVLALKRWGIGEEQMNKGIQFIMSNFASVTDE-KQQTPIGFDIIFPGMIECAQDLNLNLPLRSSDINAMLERRHLEL 189 (769)
Q Consensus 111 Tla~vlAL~~w~~~~~~i~~g~~fl~~~~~~~~~~-~~~~~vgfeii~P~ll~~a~~~gl~~~~~~~~~~~l~~~r~~kL 189 (769)
||||||||++|++++++|+||++||++|++.|.++ ++++|||||||||+||++|+++||+||++++.+..|.++|+.||
T Consensus 149 TLAcvlAL~~w~~~~~~i~rGl~fi~~nl~~~~~~~~~~~pvGFeIifP~LLe~a~~lgL~~p~~~~~l~~i~~~r~~kL 228 (800)
T PLN02592 149 TLACVVALKSWNLHPEKCEKGMSFFRENICKLEDENAEHMPIGFEVAFPSLLEIAKNLDIEVPYDSPVLKEIYAQRNLKL 228 (800)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEeeHHHHHHHHHHcCCCCCCCcHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999888644 67999999999999999999999999999999999999999999
Q ss_pred cccc---CCCCchhHHHHHhhccCCcchHHHhhccccCCCcccChhhHHHHHhccCCcchHHHHHHHHHHhCCCCCCcCC
Q 004193 190 NRNY---TAGRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAALTHFHNAGCLHYLSSLLEKFGNAVPTVHP 266 (769)
Q Consensus 190 ~~~~---~~~~p~~llhslE~~~~~~d~~~v~~~~~~~GS~~~SPsaTAa~l~~~~d~~~~~YL~~~~~~~~g~VP~~yP 266 (769)
+|++ +|+.|++|+||||||++ +||++++++|++|||||+|||||||||||++|++|++||++++++|+||||++||
T Consensus 229 ~r~~~~~~~~~p~~llhslEgl~~-~dw~~v~~~q~~~GS~~~SPSaTAaaL~~~~d~~cl~YL~~~~~k~~GgVP~vyP 307 (800)
T PLN02592 229 TRIPKDIMHKVPTTLLHSLEGMPG-LDWEKLLKLQCQDGSFLFSPSSTAFALMQTKDENCLEYLNKAVQRFNGGVPNVYP 307 (800)
T ss_pred hhCchhhhccCcchHHHHHhcccc-CCHHHHhcccCCCCCccCCchHHHHHHhccCchHHHHHHHHHHHHcCCCCCCCCC
Confidence 9999 78999999999999999 7999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhcCC-----cccCCCHHHHHHHHHHHHHcCCcccchhhhcccc
Q 004193 267 LDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGE-----EEIFLDLTTCAMAFRLLRLNGYDVSSDPLTQFAE 341 (769)
Q Consensus 267 ~~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~~~-----~~~~~Dl~~tAl~FrlLR~~Gy~VS~dvf~~F~~ 341 (769)
+++||++|+||+||||||++||++||+++|+++|++|.+++ +++.+|+|+||++|||||||||+||||+|++|++
T Consensus 308 ~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~ 387 (800)
T PLN02592 308 VDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK 387 (800)
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC
Confidence 99999999999999999999999999999999999886521 2346899999999999999999999999999998
Q ss_pred cCCccccccccccchHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhccCCCCC-CCCCCchHHHHHHhccCCccc
Q 004193 342 DNQFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQELSSGSIHS-NRFSQNVSSQVEDALKFPYHV 420 (769)
Q Consensus 342 ~g~F~~~~~e~~~dv~~lL~Ly~As~l~~~~gE~iL~ea~~fs~~~L~~~~~~~~~~d-w~~~~~l~~eV~~aL~~P~~~ 420 (769)
+|+|+|+++|+.+|++|||+||||||+++ |||.|||+|+.||++||++.+..+++.| |++.++|++||+|||++|||+
T Consensus 388 ~g~F~~~~ge~~~Dv~glL~LYeAS~l~~-~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~ 466 (800)
T PLN02592 388 GGEFFCFAGQSTQAVTGMFNLYRASQVLF-PGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYA 466 (800)
T ss_pred CCCccccccccccchHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhc
Confidence 99999999999999999999999999999 9999999999999999999886566777 988999999999999999999
Q ss_pred chhhhHHhhhhhhhc-ccchhhhhccccccCcCcHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCcchhhhHhHHH
Q 004193 421 NLERLAHRRNINLYN-VDNMRILKTSYCSLNIGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLDKLKFARQKQTY 499 (769)
Q Consensus 421 ~l~Rlear~yI~~Y~-~~~~~i~Kt~yr~~~~~n~~lLelAklDFn~~Q~~hq~El~~l~rWwke~~l~~l~faRdrlve 499 (769)
+|||||||+||++|+ .+++|||||+||||+++|++||||||+|||+||++||+||++++||||++||.+|+|+|||++|
T Consensus 467 ~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~~L~faRdr~ve 546 (800)
T PLN02592 467 SLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLGEFGVSRSELLL 546 (800)
T ss_pred CcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCCcCCcchhHHHH
Confidence 999999999999998 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCchhHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHhh--------hcCcchhccCCCh------h
Q 004193 500 CYFSVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSEEELLNLIDLLE--------RWDVEEAKNCCSE------Q 565 (769)
Q Consensus 500 ~Yf~aaa~~fEPe~s~~Rl~~aK~~~l~tviDD~fD~~gt~eEl~~ft~aie--------rWD~~~~~~l~pe------y 565 (769)
||||++|++|||+||.+|++|||+++|+++|||+||+|||+||+++||++|+ |||.+..++| |+ |
T Consensus 547 ~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~l-p~~~~~~~~ 625 (800)
T PLN02592 547 AYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRN-MRRSGSVKT 625 (800)
T ss_pred HHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcc-cccccchhH
Confidence 9999999999999999999999999999999999999999999999999996 8999999999 76 9
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcccchhHHHHHHHHhCCCCCChhhhhhhhccccchhhhHHHHhhh-cCCCCchhhhcC
Q 004193 566 VEIIFSALRSTICEFGDKTLTWQGRNATSHIVETCLRNKSVPTLDEYMENAYASFALGPIIFPAVYF-VGPKLSEEVVRD 644 (769)
Q Consensus 566 mk~~f~aL~~~~~ei~~~~~~~qgr~v~~yl~e~W~~~g~vPt~eEYl~~a~vS~g~~~~~l~~~~~-~G~~l~~e~~~~ 644 (769)
||+||.|||+++|||+.++.+.|||++++||+++|... +..++..+.+|+|...+++.++++ +|+.+|+|+++
T Consensus 626 mki~f~aLy~tineia~~a~~~qGr~v~~~L~~~W~~l-----~~~w~~~g~~s~~~~~ilv~~~~l~~g~~lsee~l~- 699 (800)
T PLN02592 626 GEELVGLLLGTLNQLSLDALEAHGRDISHLLRHAWEMW-----LLKWLLEGDGRQGEAELLVKTINLTAGRSLSEELLA- 699 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH-----HHHHHhcCceeccchhhHHHHHHHhcCCCCCHHHcc-
Confidence 99999999999999999999999999999999999732 336777788898888888888885 59999999997
Q ss_pred ccchhHHHHHHHHhhhccccccchhhhcCCCCCeeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 004193 645 PEFHNLYKLVSTCGRLLNDIQGFKRESKEGKLNSVSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKEEGSIVPR 724 (769)
Q Consensus 645 ~~~~~L~~~~~~I~RL~NDi~S~k~E~~rG~~n~V~cyMke~gg~vS~EeA~~~i~~~ie~~wkeln~~~l~~~~~~vp~ 724 (769)
++++.++++.+.||+||++|+++|+.. +|++++ +|++++++.|+..||+|.++|+++.+++||+
T Consensus 700 --~~~~~~l~~li~Rl~nDl~t~~~e~~~-------------~~~~~~-~a~~~~~~~ie~~~~eL~~lvl~~~~~~vp~ 763 (800)
T PLN02592 700 --HPQYEQLAQLTNRICYQLGHYKKNKVH-------------INTYNP-EEKSKTTPSIESDMQELVQLVLQNSSDDIDP 763 (800)
T ss_pred --chhHHHHHHHHHHHHHhhhHHhhhccc-------------CCcccH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH
Confidence 455666777788999999999998852 333566 8999999999999999999999855457999
Q ss_pred HHHHHHHhhhhhcccccccCCCCCChHHHHHHHHhhhccccc
Q 004193 725 ACKDLIWKMSKVLHLFYMNTDGFSSNVEMVKAVSEVVYEPIS 766 (769)
Q Consensus 725 ~~~~~~ln~aR~~~~~Y~~~Dg~~~~~~~k~~I~~ll~epv~ 766 (769)
+||++||+|+| +||+. ||++|++|++||++||||||+
T Consensus 764 ~cK~~f~~~~k---~fy~~--~~~~~~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 764 VIKQTFLMVAK---SFYYA--AYCDPGTINYHIAKVLFERVA 800 (800)
T ss_pred HHHHHHHHHHH---HHHHh--hcCCHHHHHHHHHHHhCCCCC
Confidence 99999999999 78887 799999999999999999985
No 3
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=3.5e-125 Score=1088.93 Aligned_cols=476 Identities=38% Similarity=0.606 Sum_probs=452.6
Q ss_pred CCcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHcCCcccchhhhccc-ccC
Q 004193 265 HPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVSSDPLTQFA-EDN 343 (769)
Q Consensus 265 yP~~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FrlLR~~Gy~VS~dvf~~F~-~~g 343 (769)
||.+++++||+||+||||||+|||++||+++|+++|+.|...++....|+++|||+|||||||||+||||||++|+ ++|
T Consensus 49 ~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g 128 (542)
T cd00684 49 YPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDG 128 (542)
T ss_pred cCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCC
Confidence 9999999999999999999999999999999999999986432233579999999999999999999999999999 569
Q ss_pred CccccccccccchHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhccCCCCCCCCCCchHHHHHHhccCCcccchh
Q 004193 344 QFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHFLKQELSSGSIHSNRFSQNVSSQVEDALKFPYHVNLE 423 (769)
Q Consensus 344 ~F~~~~~e~~~dv~~lL~Ly~As~l~~~~gE~iL~ea~~fs~~~L~~~~~~~~~~dw~~~~~l~~eV~~aL~~P~~~~l~ 423 (769)
+|++++ .+|++|||+||||||+++ |||+|||+|+.||++||++.+..+ |.+.++|++||+|||++|||+++|
T Consensus 129 ~f~~~~---~~d~~g~l~Ly~As~l~~-~gE~iLdeA~~ft~~~L~~~~~~~----~~~~~~l~~~V~~aL~~P~~~~~~ 200 (542)
T cd00684 129 KFKESL---TQDVKGMLSLYEASHLSF-PGEDILDEALSFTTKHLEEKLESN----WIIDPDLSGEIEYALEIPLHASLP 200 (542)
T ss_pred CcCchh---hhhhHHHHHHHHHhhcCC-CCcHHHHHHHHHHHHHHHHHhhcc----CCCCchHHHHHHHHccCchhcCCc
Confidence 999998 899999999999999999 999999999999999999988754 667899999999999999999999
Q ss_pred hhHHhhhhhhhcccchhhhhccccccCcCcHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC-cchhhhHhHHHHHH
Q 004193 424 RLAHRRNINLYNVDNMRILKTSYCSLNIGNEYFQKLAVDDFNICQSMHIEELKHLERWVVEKRLD-KLKFARQKQTYCYF 502 (769)
Q Consensus 424 Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAklDFn~~Q~~hq~El~~l~rWwke~~l~-~l~faRdrlve~Yf 502 (769)
|||||+||++|++++. +|++||||||+|||+||++||+||++++|||+++||. +|||+|+|+++|||
T Consensus 201 rlear~yi~~Y~~~~~------------~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf 268 (542)
T cd00684 201 RLEARWYIEFYEQEDD------------HNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYF 268 (542)
T ss_pred hHHHHHHHHHhCCCcc------------ccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHH
Confidence 9999999999998872 9999999999999999999999999999999999996 67999999999999
Q ss_pred HHhccccCCCchhHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHhhhcCcchhccCCChhHHHHHHHHHhhHHHHHH
Q 004193 503 SVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSEEELLNLIDLLERWDVEEAKNCCSEQVEIIFSALRSTICEFGD 582 (769)
Q Consensus 503 ~aaa~~fEPe~s~~Rl~~aK~~~l~tviDD~fD~~gt~eEl~~ft~aierWD~~~~~~l~peymk~~f~aL~~~~~ei~~ 582 (769)
|++|++|||++|.+|++|||+++|++++||+||.|||.+|++.||++|+|||.++++++ |+|||+||.+|++++++++.
T Consensus 269 ~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~l-Pe~mk~~~~al~~~~~ei~~ 347 (542)
T cd00684 269 WAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQL-PEYMKIVFKALLNTVNEIEE 347 (542)
T ss_pred HHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhc-cHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHhhhcccchhHHHHHHH-------------HhCCCCCChhhhhhhhccccchhhhHHHHhhhcCCCCchhhhcCccc-h
Q 004193 583 KTLTWQGRNATSHIVETC-------------LRNKSVPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRDPEF-H 648 (769)
Q Consensus 583 ~~~~~qgr~v~~yl~e~W-------------~~~g~vPt~eEYl~~a~vS~g~~~~~l~~~~~~G~~l~~e~~~~~~~-~ 648 (769)
++.+.+|+++..|+++.| .++||+||++|||++|.+|+|+++++..+++++|..+|+++++|+.. |
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~ 427 (542)
T cd00684 348 ELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRP 427 (542)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccH
Confidence 999999988888877755 48899999999999999999999998888888999999999999765 9
Q ss_pred hHHHHHHHHhhhccccccchhhhcCCCC-CeeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 004193 649 NLYKLVSTCGRLLNDIQGFKRESKEGKL-NSVSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKEEGSIVPRACK 727 (769)
Q Consensus 649 ~L~~~~~~I~RL~NDi~S~k~E~~rG~~-n~V~cyMke~gg~vS~EeA~~~i~~~ie~~wkeln~~~l~~~~~~vp~~~~ 727 (769)
+|+++++.|+||+|||+||++|+++|++ |+|.|||+|+| +|+|+|+++++++|+++||+||+++++++ +++|++|+
T Consensus 428 ~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g--~s~eeA~~~i~~~ie~~wk~ln~e~l~~~-~~~p~~~~ 504 (542)
T cd00684 428 KLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYG--VSEEEAREEIKKMIEDAWKELNEEFLKPS-SDVPRPIK 504 (542)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHH
Confidence 9999999999999999999999999999 99999999998 99999999999999999999999999874 35999999
Q ss_pred HHHHhhhhhcccccccCCCCCCh-HHHHHHHHhhhccc
Q 004193 728 DLIWKMSKVLHLFYMNTDGFSSN-VEMVKAVSEVVYEP 764 (769)
Q Consensus 728 ~~~ln~aR~~~~~Y~~~Dg~~~~-~~~k~~I~~ll~ep 764 (769)
+.++|++|++++||+++||||.| +.||++|++||++|
T Consensus 505 ~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 505 QRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 99999999999999999999998 48999999999998
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=4.2e-43 Score=349.67 Aligned_cols=174 Identities=37% Similarity=0.577 Sum_probs=151.9
Q ss_pred cChhhHHHHHhccCCcchHHHHHHHHHHhCCCCCCcCCcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhcCCc
Q 004193 229 NSPSTTAAALTHFHNAGCLHYLSSLLEKFGNAVPTVHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEE 308 (769)
Q Consensus 229 ~SPsaTAa~l~~~~d~~~~~YL~~~~~~~~g~VP~~yP~~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~~~~ 308 (769)
.||+.|++ +++.+++|.++++.+.+++.+.+|+++| +++++|++||+||||||+|||++||+++|+.+|+.|.....
T Consensus 9 ~s~~~~~~--~~~~~~~~~~~~~~Lk~~v~~~l~~~~~-d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~ 85 (183)
T PF01397_consen 9 LSPSYTAC--MQSEDEKCKERAEELKEEVRNMLPASYP-DPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNE 85 (183)
T ss_dssp TBHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHSSSS-HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSH
T ss_pred CCCcchhc--cchhHHHHHHHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhcccccc
Confidence 68999999 8889999999999999999999999999 99999999999999999999999999999999999865322
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcccchhhhccc-ccCCccccccccccchHHHHHHHhhccCCCCCChhHHHHHHHHHHHH
Q 004193 309 EIFLDLTTCAMAFRLLRLNGYDVSSDPLTQFA-EDNQFCNSLKGYLKDISAVLELYRASQITIYPDESVLEKQQFWTSHF 387 (769)
Q Consensus 309 ~~~~Dl~~tAl~FrlLR~~Gy~VS~dvf~~F~-~~g~F~~~~~e~~~dv~~lL~Ly~As~l~~~~gE~iL~ea~~fs~~~ 387 (769)
...|+++||++|||||||||+||||||++|+ ++|.|+..+ .+|++|||+||||||+++ +||+|||+|+.||++|
T Consensus 86 -~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l---~~Dv~glLsLYeAS~l~~-~gE~iLdeA~~Ft~~~ 160 (183)
T PF01397_consen 86 -EIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESL---SNDVKGLLSLYEASHLRF-HGEDILDEARAFTTKH 160 (183)
T ss_dssp -TSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGG---GGHHHHHHHHHHHHTT---TT-HHHHHHHHHHHHH
T ss_pred -ccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhh---hHhHHHHHHHHHHHHccC-CChHHHHHHHHHHHHH
Confidence 2249999999999999999999999999999 679999877 799999999999999999 9999999999999999
Q ss_pred HHHHhccCCCCCCCCCCchHHHHHHhc
Q 004193 388 LKQELSSGSIHSNRFSQNVSSQVEDAL 414 (769)
Q Consensus 388 L~~~~~~~~~~dw~~~~~l~~eV~~aL 414 (769)
|++.+.++.. ..++|+++|+|||
T Consensus 161 L~~~~~~~~~----~~~~L~~~V~~AL 183 (183)
T PF01397_consen 161 LKSLLSNLSI----PDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHTTTCT----TSCHHHHHHHHHH
T ss_pred HHHHhccCCC----CcHHHHHHHHHhC
Confidence 9999876532 1245999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=2.3e-40 Score=349.81 Aligned_cols=253 Identities=29% Similarity=0.418 Sum_probs=222.7
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCC-CcchhhhHhHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhhhhhc
Q 004193 456 FQKLAVDDFNICQSMHIEELKHLERWVVEKRL-DKLKFARQKQTYCYFSVAATLFSPELSDARMSWAKNAVLTTIVDDFY 534 (769)
Q Consensus 456 lLelAklDFn~~Q~~hq~El~~l~rWwke~~l-~~l~faRdrlve~Yf~aaa~~fEPe~s~~Rl~~aK~~~l~tviDD~f 534 (769)
||+|||+|||.||++||+|++++++||+++|+ .+.+.+|+|+..++|+.++.++.|+....|+++||+++|++++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 69999999999999999999999999999999 78887899999999999999999998888889999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhhcCcchhccCCChhHHHHHHHHHhhHHHHHHHHhhhcccc-hhHHHHHH-------------H
Q 004193 535 DLGGSEEELLNLIDLLERWDVEEAKNCCSEQVEIIFSALRSTICEFGDKTLTWQGRN-ATSHIVET-------------C 600 (769)
Q Consensus 535 D~~gt~eEl~~ft~aierWD~~~~~~l~peymk~~f~aL~~~~~ei~~~~~~~qgr~-v~~yl~e~-------------W 600 (769)
|..|+.++++.|+++++||++...... |+++++++.++.++++++...+...+++. +.+++++. |
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 159 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPL-PDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARW 159 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGS-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccc-cchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998666777 99999999999999999988887776553 44444442 4
Q ss_pred HhCCCCCChhhhhhhhccccchhhhHHHHhhhcCCCCchhhhcC-ccchhHHHHHHHHhhhccccccchhhhcCCCC-Ce
Q 004193 601 LRNKSVPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRD-PEFHNLYKLVSTCGRLLNDIQGFKRESKEGKL-NS 678 (769)
Q Consensus 601 ~~~g~vPt~eEYl~~a~vS~g~~~~~l~~~~~~G~~l~~e~~~~-~~~~~L~~~~~~I~RL~NDi~S~k~E~~rG~~-n~ 678 (769)
...|++||++||++.|..|+|+.+++....+.+|..++++..++ ...+.+.++++.+++|.|||.||+||.++|+. |.
T Consensus 160 ~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~ 239 (270)
T PF03936_consen 160 RERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNL 239 (270)
T ss_dssp HHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSH
T ss_pred hccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccH
Confidence 48899999999999999999999988777677765555443332 22344999999999999999999999999999 99
Q ss_pred eeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004193 679 VSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELL 711 (769)
Q Consensus 679 V~cyMke~gg~vS~EeA~~~i~~~ie~~wkeln 711 (769)
|.|+|+++| +|+|+|++++.+|+++.+++||
T Consensus 240 v~~l~~~~~--~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 240 VVVLMNEHG--LSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcC--CCHHHHHHHHHHHHHHHHHhcC
Confidence 999999997 9999999999999999999997
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=1.5e-38 Score=338.43 Aligned_cols=268 Identities=34% Similarity=0.529 Sum_probs=243.1
Q ss_pred hhHHHHHHHHHHHHhcCCCc-chhhhHhHHHHHHHHhccccCCCchhHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHH
Q 004193 470 MHIEELKHLERWVVEKRLDK-LKFARQKQTYCYFSVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSEEELLNLID 548 (769)
Q Consensus 470 ~hq~El~~l~rWwke~~l~~-l~faRdrlve~Yf~aaa~~fEPe~s~~Rl~~aK~~~l~tviDD~fD~~gt~eEl~~ft~ 548 (769)
.||+|++++++||+++||.. .+++|.+..++|+|+++++|+|+.+..|+++||+++|++++||+||.+++.+++..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 49999999999999999964 44999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcchhccCCChhHHHHHHHHHhhHHHHHHHHhhhcccchhHHHHHH-------------HHhCCCCCChhhhhhh
Q 004193 549 LLERWDVEEAKNCCSEQVEIIFSALRSTICEFGDKTLTWQGRNATSHIVET-------------CLRNKSVPTLDEYMEN 615 (769)
Q Consensus 549 aierWD~~~~~~l~peymk~~f~aL~~~~~ei~~~~~~~qgr~v~~yl~e~-------------W~~~g~vPt~eEYl~~ 615 (769)
+++||+....+++ |+++++++.+++++++++...+...+|+.....+++. |...|++||++||+.+
T Consensus 81 ~~~~~~~~~~~~~-p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~ 159 (284)
T cd00868 81 AVERWDISAIDEL-PEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLEN 159 (284)
T ss_pred HHHhcChhhhhhC-CHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHh
Confidence 9999998888888 9999999999999999998888776665544444443 4478999999999999
Q ss_pred hccccchhhhHHHHhhhcCCCCch-hhhcCccchhHHHHHHHHhhhccccccchhhhcCCCC-CeeeeeeecCCCCCCHH
Q 004193 616 AYASFALGPIIFPAVYFVGPKLSE-EVVRDPEFHNLYKLVSTCGRLLNDIQGFKRESKEGKL-NSVSLQMTYSDGNMTEV 693 (769)
Q Consensus 616 a~vS~g~~~~~l~~~~~~G~~l~~-e~~~~~~~~~L~~~~~~I~RL~NDi~S~k~E~~rG~~-n~V~cyMke~gg~vS~E 693 (769)
+..|+|+.+++....+.+|..+|+ ++..++.+.++.+.++.+++|+||+.||+||+.+|+. |+|.|||+++| +|.+
T Consensus 160 R~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~--~~~~ 237 (284)
T cd00868 160 RRVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYG--VSEE 237 (284)
T ss_pred ceehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccC--CCHH
Confidence 999999999877777778999998 7778899999999999999999999999999999999 99999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhhhhccccc
Q 004193 694 EAIEKIKVVIKSTRRELLRLVLKEEGSIVPRACKDLIWKMSKVLHLFY 741 (769)
Q Consensus 694 eA~~~i~~~ie~~wkeln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y 741 (769)
+|++++.+++++.|+++++++.+.. ++.++.+++.+.|++|.....|
T Consensus 238 eA~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 238 EALEELRKMIEEAWKELNEEVLKLS-SDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhhhhcC
Confidence 9999999999999999999998653 2478999999999999876654
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=99.94 E-value=2.1e-26 Score=248.50 Aligned_cols=235 Identities=21% Similarity=0.201 Sum_probs=196.4
Q ss_pred HHHHHHHhcCCCcchhhhHhHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHhhhhhccCC-CCHHHHHHHHHHhhhcC
Q 004193 477 HLERWVVEKRLDKLKFARQKQTYCYFSVAATLFSPELSDARM-SWAKNAVLTTIVDDFYDLG-GSEEELLNLIDLLERWD 554 (769)
Q Consensus 477 ~l~rWwke~~l~~l~faRdrlve~Yf~aaa~~fEPe~s~~Rl-~~aK~~~l~tviDD~fD~~-gt~eEl~~ft~aierWD 554 (769)
+...|.++.|+-.-+.+|++..+++|+..+.++.|+.+.+|+ ..++++.|++++||+||.. ++.++++.+++.+.++.
T Consensus 18 ~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~~ 97 (303)
T cd00687 18 EYLEWVLEEMLIPSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDIL 97 (303)
T ss_pred HHHHHHHHcCCCCcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhcc
Confidence 467899999775445689999998888888888899999999 6669999999999999987 49999999998888765
Q ss_pred cchhccCCChhHHHHHHHHHhhHHHHHHHHhhhcccc----hhHH----HHHH-HHhCCCCCChhhhhhhhccccchhhh
Q 004193 555 VEEAKNCCSEQVEIIFSALRSTICEFGDKTLTWQGRN----ATSH----IVET-CLRNKSVPTLDEYMENAYASFALGPI 625 (769)
Q Consensus 555 ~~~~~~l~peymk~~f~aL~~~~~ei~~~~~~~qgr~----v~~y----l~e~-W~~~g~vPt~eEYl~~a~vS~g~~~~ 625 (769)
......- |...+.+..++.+++.++...+...+.+. +..| +.++ |...|++||++||+++|..|+|+.++
T Consensus 98 ~~~~~~~-~~~~~p~~~~~~d~~~r~~~~~~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~ 176 (303)
T cd00687 98 RGDGLDS-PDDATPLEFGLADLWRRTLARMSAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPC 176 (303)
T ss_pred CCCCCCC-CCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhccccccc
Confidence 4332211 36778889999999999866542222221 2222 3332 66889999999999999999999998
Q ss_pred HHHHhhhcCCCCchhhhcCccchhHHHHHHHHhhhccccccchhhh-cCCCC-CeeeeeeecCCCCCCHHHHHHHHHHHH
Q 004193 626 IFPAVYFVGPKLSEEVVRDPEFHNLYKLVSTCGRLLNDIQGFKRES-KEGKL-NSVSLQMTYSDGNMTEVEAIEKIKVVI 703 (769)
Q Consensus 626 ~l~~~~~~G~~l~~e~~~~~~~~~L~~~~~~I~RL~NDi~S~k~E~-~rG~~-n~V~cyMke~gg~vS~EeA~~~i~~~i 703 (769)
+..+.+++|..+|+++..++.+.++.++++.+++|+|||.||+||. ++|+. |+|.|+|+++| +|+|+|++++.+++
T Consensus 177 ~~l~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g--~s~~eA~~~~~~~~ 254 (303)
T cd00687 177 LGLSEFIGGPEVPAAVRLDPVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHG--LSLEEAISVVRDMH 254 (303)
T ss_pred HHHHHHhcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 7777777899999999999999999999999999999999999999 89998 99999999999 99999999999999
Q ss_pred HHHHHHHHHHH
Q 004193 704 KSTRRELLRLV 714 (769)
Q Consensus 704 e~~wkeln~~~ 714 (769)
++.++++.+..
T Consensus 255 ~~~~~~f~~~~ 265 (303)
T cd00687 255 NERITQFEELE 265 (303)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.94 E-value=5.5e-27 Score=210.54 Aligned_cols=93 Identities=19% Similarity=0.442 Sum_probs=88.5
Q ss_pred hcCCCC-CeeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhhhhcccc-cccCCCCC
Q 004193 671 SKEGKL-NSVSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKEEGSIVPRACKDLIWKMSKVLHLF-YMNTDGFS 748 (769)
Q Consensus 671 ~~rG~~-n~V~cyMke~gg~vS~EeA~~~i~~~ie~~wkeln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~-Y~~~Dg~~ 748 (769)
++|||+ |+|+||||||| +|+|||+++++++|+++||+||+++++++. +|+++++.++|+||+++++ |+++||||
T Consensus 1 ~~rg~vaSsIeCYMke~g--~seeeA~~~i~~li~~~WK~iN~e~l~~~~--~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t 76 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHG--VTKEEAVSELKKMIRDNYKIVMEEFLTIKD--VPRPVLVRCLNLARLIDVYCYNEGDGFT 76 (96)
T ss_pred CCCCcchHHHHHHhccCC--CCHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHHHhheecCCCCCC
Confidence 578999 99999999998 999999999999999999999999999765 9999999999999999999 99999999
Q ss_pred ChH-HHHHHHHhhhcccccC
Q 004193 749 SNV-EMVKAVSEVVYEPISV 767 (769)
Q Consensus 749 ~~~-~~k~~I~~ll~epv~~ 767 (769)
.++ .+|++|++||++||++
T Consensus 77 ~~~~~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 77 YPHGKLKDLITSLFFHPLPL 96 (96)
T ss_pred CCcHHHHHHHHHHhccCCCC
Confidence 774 8999999999999985
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.59 E-value=1.2e-15 Score=155.51 Aligned_cols=219 Identities=21% Similarity=0.165 Sum_probs=160.6
Q ss_pred HHhccccCCCchhHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHhhhcCcchhccCCChhHHHHHHHHHhhHHHHHH
Q 004193 503 SVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSEEELLNLIDLLERWDVEEAKNCCSEQVEIIFSALRSTICEFGD 582 (769)
Q Consensus 503 ~aaa~~fEPe~s~~Rl~~aK~~~l~tviDD~fD~~gt~eEl~~ft~aierWD~~~~~~l~peymk~~f~aL~~~~~ei~~ 582 (769)
++++++|+|+++..|.+++++..+++++||++|..++..+.......+. ..+. |..+...+..+.+.++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~ 74 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVA------IDGL-PEAILAGDLLLADAFEELAR 74 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHH------hcCc-hHHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999999999999999998877666655544331 1233 67777788888888888865
Q ss_pred HHh-hhccc---chhHHHHH-----HHHhCCCCCChhhhhhhhccccchhhhHHHHhhhcCCCCchhhhcCccchhHHHH
Q 004193 583 KTL-TWQGR---NATSHIVE-----TCLRNKSVPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRDPEFHNLYKL 653 (769)
Q Consensus 583 ~~~-~~qgr---~v~~yl~e-----~W~~~g~vPt~eEYl~~a~vS~g~~~~~l~~~~~~G~~l~~e~~~~~~~~~L~~~ 653 (769)
... ..+.+ .+..++.. .|... +.||++||+..+..++| +++.......++...++ ....+.+.++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 151 (243)
T cd00385 75 EGSPEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKTA-GLVGALCLLGAGLSGGE-AELLEALRKLGRA 151 (243)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHH-HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 421 01111 11122221 13222 68999999999999974 55544444545554454 3334678999999
Q ss_pred HHHHhhhccccccchhhhcCC-CC-CeeeeeeecCCCCC------------CHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 004193 654 VSTCGRLLNDIQGFKRESKEG-KL-NSVSLQMTYSDGNM------------TEVEAIEKIKVVIKSTRRELLRLVLKEEG 719 (769)
Q Consensus 654 ~~~I~RL~NDi~S~k~E~~rG-~~-n~V~cyMke~gg~v------------S~EeA~~~i~~~ie~~wkeln~~~l~~~~ 719 (769)
++.+.+|.||+.++.+|.++| +. |.+.++|+++| + +.++|.+++..++++.|+++++......
T Consensus 152 ~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 228 (243)
T cd00385 152 LGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYG--VPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILSLP- 228 (243)
T ss_pred HHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhC--ChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCcH-
Confidence 999999999999999999984 44 99999999998 7 8899999999999999999998765432
Q ss_pred CCCCHHHHHHHHhhhh
Q 004193 720 SIVPRACKDLIWKMSK 735 (769)
Q Consensus 720 ~~vp~~~~~~~ln~aR 735 (769)
..++.+++.+.++.|
T Consensus 229 -~~~~~~~~~~~~~~~ 243 (243)
T cd00385 229 -DVPRALLALALNLYR 243 (243)
T ss_pred -HHHHHHHHHHHHHhC
Confidence 256777888777654
No 10
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=97.98 E-value=1.6e-05 Score=72.63 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=38.6
Q ss_pred CcCCCcchhhhhccccCC--CCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhH--HHHHHHHhhcCChHH
Q 004193 52 ELSVSPYDTAWVAMVPSL--ELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTL--ACVLALKRWGIGEEQ 127 (769)
Q Consensus 52 ~~s~S~YDTAwva~vp~~--~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tl--a~vlAL~~w~~~~~~ 127 (769)
......+-|+|++++-.. +....+..-.+++||+++|.+||+|+.... +....|. .+++++..+.....+
T Consensus 21 ~~~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~------~~~~~t~~~~~~l~~~~~~~~~~~ 94 (109)
T PF13243_consen 21 NWGSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG------EYVSMTAAAIAALALAGVYPDDEA 94 (109)
T ss_dssp --------------------TS-SSBSSHHHHHHHHH---TTS--S-TS--------HHHHHHHHHHHHHHHHTT--HHH
T ss_pred cccccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC------CCHHHHHHHHHHHHHhCCCCCCHH
Confidence 344568889997666443 334567889999999999999999996632 2233443 444455556667789
Q ss_pred HHHHHHHHHhc
Q 004193 128 MNKGIQFIMSN 138 (769)
Q Consensus 128 i~~g~~fl~~~ 138 (769)
++||++||.++
T Consensus 95 ~~r~~~wi~~~ 105 (109)
T PF13243_consen 95 VERGLEWILSH 105 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999999887
No 11
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=97.90 E-value=0.00041 Score=76.42 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcC---ChHHHHHHHHHHHhcc
Q 004193 79 QCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGI---GEEQMNKGIQFIMSNF 139 (769)
Q Consensus 79 ~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~---~~~~i~~g~~fl~~~~ 139 (769)
..++||+++|.+||+|+... --+.-|..|+.||..-+. ....++||++||.+.-
T Consensus 3 ~~~~~L~~~Q~~dG~W~~~~-------~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q 59 (348)
T cd02889 3 RALDFLLSLQAPDGHWPGEY-------SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQ 59 (348)
T ss_pred hHHHHHHHhccCCCCccccC-------CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcC
Confidence 46899999999999998652 345678888999988654 3479999999999853
No 12
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=97.67 E-value=1.1e-05 Score=73.83 Aligned_cols=55 Identities=36% Similarity=0.631 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCC--hHHHHHHHHHHHhcc
Q 004193 79 QCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIG--EEQMNKGIQFIMSNF 139 (769)
Q Consensus 79 ~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~--~~~i~~g~~fl~~~~ 139 (769)
++++||+++|.+||||+.+.+ +....|.+++.+|+..+.. .++|.||+.||.++-
T Consensus 3 ~~~~~l~~~Q~~dG~W~~~~~------~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q 59 (109)
T PF13243_consen 3 RAAEWLLSQQNPDGSWGYNWG------SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQ 59 (109)
T ss_dssp --------------------------------------------TS-SSBSSHHHHHHHHH--
T ss_pred ccccccccccccccccccccc------ccccccccccccccccCCCCcHHHHHHHHHHHHHhc
Confidence 578999999999999986632 5689999999999998753 378999999999864
No 13
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=97.65 E-value=0.0061 Score=72.84 Aligned_cols=304 Identities=15% Similarity=0.133 Sum_probs=162.7
Q ss_pred CchHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCC--hHHHHHHHHHHHhcccc------------
Q 004193 76 CFPQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIG--EEQMNKGIQFIMSNFAS------------ 141 (769)
Q Consensus 76 ~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~--~~~i~~g~~fl~~~~~~------------ 141 (769)
.=-+.++||++.|++||+||....+ .--+..|.=+-+||+--+.. +.++.||.+||.+.=..
T Consensus 47 ~~~~~~~~l~~~Q~~DGgW~~~~~~----~~~~~~Tv~aY~aLrl~G~~~~~~~m~~Ar~~i~~~GG~~~~~~~~k~~La 122 (621)
T TIGR01787 47 YREKIVRYLRHHQNEDGGWGLHIGG----KSTVFGTVLAYVALKILGMSPDDPAMVRARNFILKQGGAVASPVFTKFWLA 122 (621)
T ss_pred HHHHHHHHHHHhcCCCCCeeCCcCC----CcchHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHcCCcccCchHHHHHHH
Confidence 3458899999999999999965321 13467777788888886654 46899999999875310
Q ss_pred ccCc---cCCCCceEEEeh-h------------------hHHHHHHHcCCCCCCCchhHHHHHHHhHHHhcccc------
Q 004193 142 VTDE---KQQTPIGFDIIF-P------------------GMIECAQDLNLNLPLRSSDINAMLERRHLELNRNY------ 193 (769)
Q Consensus 142 ~~~~---~~~~~vgfeii~-P------------------~ll~~a~~~gl~~~~~~~~~~~l~~~r~~kL~~~~------ 193 (769)
+... +...|+=.||++ | -.+-.+ .+..+..+.+.+++|+..- .+..+.+
T Consensus 123 ~~G~~~W~~~~~~P~El~llP~~~p~~~~~~w~~~~~v~l~~~~~--~~~~~~~~~~~~~el~~~~-~~~~~~~~~~~~~ 199 (621)
T TIGR01787 123 LLGVYPWEGVPPLPPEIMLLPKWLPIHPSKSWCRCRMVYLPMSYC--YGERLSAPIDPREELYVED-DSIRAQRNNVAKE 199 (621)
T ss_pred HcCccccccCCCCCHhHHhcCcccCcCcchhhhhhhhHHHHHHHH--cCccccCCCCcchhhcCCC-cchhhccCCCCcc
Confidence 0011 222334444432 2 233222 3333332222156665433 2222221
Q ss_pred -CCCCc-h---hHHHHHhhccCC--cc-------hHHHhhccccCCCcccChhhHHHHHhc-c--CCc----chHHHHHH
Q 004193 194 -TAGRK-E---YLAYVSEGIGKL--QD-------WEMVMKYQRKNGSLFNSPSTTAAALTH-F--HNA----GCLHYLSS 252 (769)
Q Consensus 194 -~~~~p-~---~llhslE~~~~~--~d-------~~~v~~~~~~~GS~~~SPsaTAa~l~~-~--~d~----~~~~YL~~ 252 (769)
.+. | + .+++.++.+... +. -+.+.++|..+|.+..-..+++...+. . .|+ ++++.|+.
T Consensus 200 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~g~~~~i~~~~~~~al~~~g~~d~p~~~~~l~~l~~ 278 (621)
T TIGR01787 200 DLYT-PHSWLLRALYGLLNLFYHPFLRKALRKRALQWLYEHIAADGSIGPISKAMAMLALWFLDGPNSPAFQKHLQRIDD 278 (621)
T ss_pred cccc-cHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhccCCCchhHhHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 011 1 1 233444432110 01 122566788888777765555333232 1 142 34444433
Q ss_pred HHHHh-CCCCCCcCCcchHHHHHHHHHHHhcCC--CCCcHHHHHHHHHHHHHhhh-c---------------CC------
Q 004193 253 LLEKF-GNAVPTVHPLDIYINLTMVESLESLGV--DRHFRTEIKRVLDETYRFWL-Q---------------GE------ 307 (769)
Q Consensus 253 ~~~~~-~g~VP~~yP~~~fe~l~~VdtL~rlGi--~~hF~~EI~~~L~~~~~~~~-~---------------~~------ 307 (769)
.+=.. +|.-...++..+....++|-.|...|+ ..-+.+.|+.+++.+-+.-. + |+
T Consensus 279 ~~~~~~dg~~~q~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~ 358 (621)
T TIGR01787 279 YLWLQLDGMKMQGTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFL 358 (621)
T ss_pred cEEEeCCccEEecCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccC
Confidence 32111 344444458889999999999999996 33556788888877755421 1 10
Q ss_pred cccCCCHHHHHHHHHHHHHcC---Ccccchhh-------hccc-ccCCcccccccc----------------------cc
Q 004193 308 EEIFLDLTTCAMAFRLLRLNG---YDVSSDPL-------TQFA-EDNQFCNSLKGY----------------------LK 354 (769)
Q Consensus 308 ~~~~~Dl~~tAl~FrlLR~~G---y~VS~dvf-------~~F~-~~g~F~~~~~e~----------------------~~ 354 (769)
+...+|+|||+.+...+.+.. ..++.+.+ .... ++|.|.++-..+ ..
T Consensus 359 ~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~ 438 (621)
T TIGR01787 359 NCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYV 438 (621)
T ss_pred CCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCC
Confidence 223469999999865543332 33444433 2233 567776542110 12
Q ss_pred chHH--HHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHh
Q 004193 355 DISA--VLELYRASQITIYPDESVLEKQQFWTSHFLKQEL 392 (769)
Q Consensus 355 dv~~--lL~Ly~As~l~~~~gE~iL~ea~~fs~~~L~~~~ 392 (769)
|+++ |..|-.+.+ .++ ..++++..+.+||.+..
T Consensus 439 ~~T~~~l~aL~~~~~----r~~-~~~~~i~rAl~~L~~~Q 473 (621)
T TIGR01787 439 DVTARVIQALGAFGH----RAD-EIRNVLERALEYLRREQ 473 (621)
T ss_pred chHHHHHHHHHHhcC----ccH-hHHHHHHHHHHHHHHhc
Confidence 4554 555543321 222 23577777888887754
No 14
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=97.61 E-value=0.03 Score=67.26 Aligned_cols=248 Identities=17% Similarity=0.176 Sum_probs=138.5
Q ss_pred chHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCC--hHHHHHHHHHHHhcccc--c----------
Q 004193 77 FPQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIG--EEQMNKGIQFIMSNFAS--V---------- 142 (769)
Q Consensus 77 Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~--~~~i~~g~~fl~~~~~~--~---------- 142 (769)
=.+.+.||++.|++||+||....+ .--+..|.=+-+||+--+.. +.++.||.+||.+.=.. .
T Consensus 48 ~~~~~~~l~~~q~~dGgw~~~~~~----~~~~~~T~~~Y~aLrl~G~~~~~~~m~~Ar~~i~~~GG~~~~~~~~k~~La~ 123 (634)
T cd02892 48 RKEIARYLRNHQNPDGGWGLHHEG----PSTMFGTVLNYVALRLLGVSPDDPHMVKARNWILSHGGAARIPVWGKIWLAL 123 (634)
T ss_pred HHHHHHHHHHhccCCCCccCCCCC----CcchHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCCcccccHHHHHHHHH
Confidence 357899999999999999966321 13466677778888886654 46899999999876310 0
Q ss_pred cCc---cCCCCceEEEeh-hh--------------------HHHHHHHcCCCCCCCchh---HHHHHHHhHHHhc----c
Q 004193 143 TDE---KQQTPIGFDIIF-PG--------------------MIECAQDLNLNLPLRSSD---INAMLERRHLELN----R 191 (769)
Q Consensus 143 ~~~---~~~~~vgfeii~-P~--------------------ll~~a~~~gl~~~~~~~~---~~~l~~~r~~kL~----~ 191 (769)
... +...|+=.|+++ |. ++=..++ ...|.+++. +++|+..--.++. |
T Consensus 124 ~G~~~W~~~~~~P~El~llP~~~p~~~~~~~~~~R~~~~p~~~l~~~r--~~~~~~~~~~~~~~el~~~~~~~~~~~~~~ 201 (634)
T cd02892 124 LGVYPWEGVPPLPPELWLLPSWLPFHPYKFWCWARTVYVPMSYLYGKR--PVAPITPLVLSLRDELYVEPYEKINWYKHR 201 (634)
T ss_pred cCccccccCCCCCHhHHhcCCcCCccHHHHHHHHHHHHHhHHHHhcCC--cccCCCCccccchHHhCCCCcccccccccc
Confidence 011 222333444432 22 1111111 122222221 2222111000000 0
Q ss_pred ---ccCCCCc-------hhHHHHHhhccCCcc--------hHHHhhccccCCCcccChhhHHHHHhc----cC-Cc----
Q 004193 192 ---NYTAGRK-------EYLAYVSEGIGKLQD--------WEMVMKYQRKNGSLFNSPSTTAAALTH----FH-NA---- 244 (769)
Q Consensus 192 ---~~~~~~p-------~~llhslE~~~~~~d--------~~~v~~~~~~~GS~~~SPsaTAa~l~~----~~-d~---- 244 (769)
...+... -.++|.+|.+....- .+-+...|..+|++..-|.+|+-..|. .+ |+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~a~~~~~~~i~~~q~~~g~~~~~~~~~~l~~lal~~~g~~~~~~~~ 281 (634)
T cd02892 202 NDLYDYRPPWQRLFDALDRLLHWYEPLPPKPLRRKALRKAYEWILYRDENTGYLGIIPPPKANNMLALWVLGYPDSPAFK 281 (634)
T ss_pred cccccCCCChHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCCceeeeehHHHHHHHHHHHcCCCCCHHHH
Confidence 0000000 123455554432110 111334577899999999998766554 21 32
Q ss_pred chHHHHHHHHHHh-CCCCCCcC-CcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhh---------------cCC
Q 004193 245 GCLHYLSSLLEKF-GNAVPTVH-PLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWL---------------QGE 307 (769)
Q Consensus 245 ~~~~YL~~~~~~~-~g~VP~~y-P~~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~---------------~~~ 307 (769)
++++++...+-.. +|.....+ +..+.....++-.|...|+...+.+.|+..++-+-+.-. .|+
T Consensus 282 ~~l~~l~~~~~~~~~g~~~~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GG 361 (634)
T cd02892 282 RHLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGG 361 (634)
T ss_pred HHHHHHHhcEEEecCCcEEEcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCC
Confidence 3444444433111 45444433 556889999999999999986678889998887755431 111
Q ss_pred ------cccCCCHHHHHHHHHHHHHcCCc
Q 004193 308 ------EEIFLDLTTCAMAFRLLRLNGYD 330 (769)
Q Consensus 308 ------~~~~~Dl~~tAl~FrlLR~~Gy~ 330 (769)
+...+|+|+||.+.++|...+..
T Consensus 362 W~fs~~~~~~pd~d~Ta~~l~AL~~~~~~ 390 (634)
T cd02892 362 WAFSTANQGYPDSDDTAEALKALLRLQEL 390 (634)
T ss_pred CCCCCCCCCCCCcCchHHHHHHHHHhhcc
Confidence 12247999999999999888754
No 15
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=97.46 E-value=0.015 Score=69.54 Aligned_cols=289 Identities=17% Similarity=0.138 Sum_probs=150.9
Q ss_pred hhhHHHHHHHHHHHhc-C----CCcCCCcchhhh-hccccCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCccchhH
Q 004193 34 NLCFQRTKERTEKMFD-K----IELSVSPYDTAW-VAMVPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKDA 107 (769)
Q Consensus 34 ~~~~~~~~~~i~~~~~-~----g~~s~S~YDTAw-va~vp~~~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d~ 107 (769)
.+.++..++.+..+-. + |+++.++-=||= |-+--..+-...+.=-+..+||++.|++|||||....+ .--
T Consensus 15 ~~a~~~~~~~l~~~Q~~dG~W~~e~~~~~~~~a~~i~~~~~~g~~~~~~~~~~~~~l~~~Q~~DGgWg~~~~~----~~~ 90 (635)
T TIGR01507 15 VEAIDRAVDYLLSCQKDEGYWWGELESNVTIEAEYVLLCHILDRVDRDRMEKIRNYLLHEQREDGTWALYPGG----PGD 90 (635)
T ss_pred HHHHHHHHHHHHHhccCCCccccccCCcchhcHHHHHHHHHHCCCcHHHHHHHHHHHHHhccCCCCccCccCC----Ccc
Confidence 4455555555555544 3 566555555554 32222221111233457789999999999999966421 134
Q ss_pred HhhhHHHHHHHHhhcCC--hHHHHHHHHHHHhcccc--c----------cCc---cCCCCceEEEeh-------------
Q 004193 108 VLCTLACVLALKRWGIG--EEQMNKGIQFIMSNFAS--V----------TDE---KQQTPIGFDIIF------------- 157 (769)
Q Consensus 108 l~~Tla~vlAL~~w~~~--~~~i~~g~~fl~~~~~~--~----------~~~---~~~~~vgfeii~------------- 157 (769)
+..|.=+-+||+--+.. +.++.||.+||.+.=.. . ... +...|+=.|+++
T Consensus 91 ~~~Tv~~Y~aLrl~G~~~~~~~m~rAr~~I~~~GG~~~~~~~tk~~LAl~G~~~W~~~~~~P~El~llP~~~p~~~~~~~ 170 (635)
T TIGR01507 91 LSTTVEAYVALKYIGMSRDEPPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWRGVPMVPPEIMLLPKRFPFNIYEFS 170 (635)
T ss_pred hhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHcCCcccccHHHHHHHHHcCCcCcccCCCCCHHHHhCCCcCCccHHHHH
Confidence 66777778888887654 36899999999875310 0 001 122233344332
Q ss_pred --------hhHHHHHHHcCCCCCCCchh-HHHHHHHhHHHhcc-cc-C-CCC-----chhHHHHHhhccCC-cc------
Q 004193 158 --------PGMIECAQDLNLNLPLRSSD-INAMLERRHLELNR-NY-T-AGR-----KEYLAYVSEGIGKL-QD------ 213 (769)
Q Consensus 158 --------P~ll~~a~~~gl~~~~~~~~-~~~l~~~r~~kL~~-~~-~-~~~-----p~~llhslE~~~~~-~d------ 213 (769)
|-++=..++ ...|.+... +++|+..-..+.+. ++ . ++. =..++|.+|.+... +.
T Consensus 171 ~~~R~~~~P~~~l~~~r--~~~~~~~~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~lr~~A~~~ 248 (635)
T TIGR01507 171 SWARATVVPLSIVCSRK--PVFPLPERARVPELYETDVPKPRRRGAKGGTGWGIFDALDRALHGYEKLSVHPFRRAAEIR 248 (635)
T ss_pred HHHHHHHHHHHHHhcCC--CccCCCcccChHhhcCCChHHhcccCCccCCcHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 222221121 112222111 24444322222110 00 0 000 01235666655422 10
Q ss_pred -hHHHhhccccCCCccc-Ch-hhH--HHHHhcc--CCc----chHHHHHHHHHHhCCCCCCc-CCcchHHHHHHHHHHHh
Q 004193 214 -WEMVMKYQRKNGSLFN-SP-STT--AAALTHF--HNA----GCLHYLSSLLEKFGNAVPTV-HPLDIYINLTMVESLES 281 (769)
Q Consensus 214 -~~~v~~~~~~~GS~~~-SP-saT--Aa~l~~~--~d~----~~~~YL~~~~~~~~g~VP~~-yP~~~fe~l~~VdtL~r 281 (769)
.+-+...|..+|++.+ .| ..+ .|+.... .|+ +++++|...+-..+|+.... +...+.....+|-.|+.
T Consensus 249 a~~~i~~~~e~~g~~~~i~p~~~~~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~s~vWDTa~ai~AL~~ 328 (635)
T TIGR01507 249 ALDWLLERQAGDGSWGGIQPAMFNALIALKILGMTQHDAFIKLGWEGIDLYGVELDDSWMFQACVSPVWDTALAVLALRE 328 (635)
T ss_pred HHHHHHHHHcCCCceeecchHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHheEecCCceEecCCCCcHHHHHHHHHHHHH
Confidence 1113334667776655 33 212 2221222 232 37777766555444444321 13467888999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhhh--------------cC------CcccCCCHHHHHHHHHHHHHcCC
Q 004193 282 LGVDRHFRTEIKRVLDETYRFWL--------------QG------EEEIFLDLTTCAMAFRLLRLNGY 329 (769)
Q Consensus 282 lGi~~hF~~EI~~~L~~~~~~~~--------------~~------~~~~~~Dl~~tAl~FrlLR~~Gy 329 (769)
+|++.. .+.|+...+-+-+... .| .+...+|+||||.++.+|...|.
T Consensus 329 ag~~~~-~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~ 395 (635)
T TIGR01507 329 AGLPAD-HDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRL 395 (635)
T ss_pred cCCCCC-CHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCC
Confidence 998754 4678887777655410 01 13346899999999999999863
No 16
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=97.40 E-value=0.00059 Score=81.46 Aligned_cols=103 Identities=18% Similarity=0.257 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHhc-CCCc-----CCCcchhhhh--ccccCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCc-----
Q 004193 36 CFQRTKERTEKMFD-KIEL-----SVSPYDTAWV--AMVPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSW----- 102 (769)
Q Consensus 36 ~~~~~~~~i~~~~~-~g~~-----s~S~YDTAwv--a~vp~~~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~----- 102 (769)
.++..++-|++..+ +|.- .+..|-|+|+ |+.-.-.....+....+++||++.|.+|||||+.-.+-.
T Consensus 478 ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~ 557 (634)
T TIGR03463 478 AISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYV 557 (634)
T ss_pred HHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCcccccccc
Confidence 35555666666554 4432 3568999995 443321112346678899999999999999986421100
Q ss_pred -cchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhc
Q 004193 103 -LVKDAVLCTLACVLALKRWGI-GEEQMNKGIQFIMSN 138 (769)
Q Consensus 103 -~~~d~l~~Tla~vlAL~~w~~-~~~~i~~g~~fl~~~ 138 (769)
...-....|..||+||..-+. +...|+||++||.++
T Consensus 558 ~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~ 595 (634)
T TIGR03463 558 EGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSR 595 (634)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence 012346889999999998653 347899999999974
No 17
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=97.34 E-value=0.021 Score=68.36 Aligned_cols=57 Identities=26% Similarity=0.553 Sum_probs=45.0
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCC--hHHHHHHHHHHHhc
Q 004193 78 PQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIG--EEQMNKGIQFIMSN 138 (769)
Q Consensus 78 p~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~--~~~i~~g~~fl~~~ 138 (769)
-+..+||++.|++||+||....+ .--+..|.=+-+||+--+.. +.++.||.+||.+.
T Consensus 45 ~~~~~yl~~~Q~~dGgWgl~~~~----~~~~~~T~~~Y~aLrl~G~~~~~~~~~rAr~~i~~~ 103 (634)
T TIGR03463 45 AGIIRHFENSQLADGAWGLHPEA----PGQVFTTVLNYVALRLLGVGKEDAGLARARQWLHAQ 103 (634)
T ss_pred HHHHHHHHHhccCCCCccCCCCC----CcchHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999966321 12467777778888887543 47899999999998
No 18
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=97.15 E-value=0.019 Score=68.63 Aligned_cols=241 Identities=17% Similarity=0.153 Sum_probs=135.5
Q ss_pred CCchHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhccccccCccCCCCceE
Q 004193 75 PCFPQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGI-GEEQMNKGIQFIMSNFASVTDEKQQTPIGF 153 (769)
Q Consensus 75 p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~-~~~~i~~g~~fl~~~~~~~~~~~~~~~vgf 153 (769)
+.-+.|++||++.|..||+||.-. ..-+++||+.-+. .+..++||+++|++-++.-.|..-..+.|-
T Consensus 227 ~a~~~a~~~~~~~~~~~g~~~~i~------------~~~~~~al~~~g~~d~p~~~~~l~~l~~~~~~~~dg~~~q~~~s 294 (621)
T TIGR01787 227 ALRKRALQWLYEHIAADGSIGPIS------------KAMAMLALWFLDGPNSPAFQKHLQRIDDYLWLQLDGMKMQGTGS 294 (621)
T ss_pred HHHHHHHHHHHHHhccCCCchhHh------------HHHHHHHHHHcCCCCCHHHHHHHHHHhhcEEEeCCccEEecCCC
Confidence 356789999999999999999762 1228888888764 458899999999998765433210011132
Q ss_pred EEehhhHHHHHH-HcCC-CCC-CCchhHHHHHHHhHHHhcc-----------------cc----CCCCc----hhH-HHH
Q 004193 154 DIIFPGMIECAQ-DLNL-NLP-LRSSDINAMLERRHLELNR-----------------NY----TAGRK----EYL-AYV 204 (769)
Q Consensus 154 eii~P~ll~~a~-~~gl-~~~-~~~~~~~~l~~~r~~kL~~-----------------~~----~~~~p----~~l-lhs 204 (769)
.+-=-++.-.|- +.|+ ..+ +.+...+.+-=+.+..... .. .+..| ++. +-.
T Consensus 295 ~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la 374 (621)
T TIGR01787 295 QVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALK 374 (621)
T ss_pred cHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHH
Confidence 222223322222 3463 223 3332222211111111111 00 12233 111 101
Q ss_pred H------------hhccCCcchHHHhhccccCCCccc-----C--------h--------------hhHHHHHhc---cC
Q 004193 205 S------------EGIGKLQDWEMVMKYQRKNGSLFN-----S--------P--------------STTAAALTH---FH 242 (769)
Q Consensus 205 l------------E~~~~~~d~~~v~~~~~~~GS~~~-----S--------P--------------saTAa~l~~---~~ 242 (769)
+ |++...+|| +...|..||++.+ . | ..||.+++. .+
T Consensus 375 ~~l~~~~~~~~~~~~l~~a~~~--Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~ 452 (621)
T TIGR01787 375 AVLLLQEDEHVKRDRLRDAVNW--ILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFG 452 (621)
T ss_pred HHHhhcCcccccHHHHHHHHHH--HHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhc
Confidence 1 222223333 5567999999963 1 3 578888775 11
Q ss_pred ---C------cchHHHHHHHHHHhCCCCCCcCCcc-hHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhc-CC--c-
Q 004193 243 ---N------AGCLHYLSSLLEKFGNAVPTVHPLD-IYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQ-GE--E- 308 (769)
Q Consensus 243 ---d------~~~~~YL~~~~~~~~g~VP~~yP~~-~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~-~~--~- 308 (769)
+ ++|.+||.+..+. +|+....+-.. ++....++..|..+|-.+.-.++|+..++.+-+.... |+ +
T Consensus 453 ~r~~~~~~~i~rAl~~L~~~Q~~-DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~ 531 (621)
T TIGR01787 453 HRADEIRNVLERALEYLRREQRA-DGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGED 531 (621)
T ss_pred CccHhHHHHHHHHHHHHHHhcCC-CCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcC
Confidence 2 5688898886544 34332222222 2446678889999997543338899999998876422 21 0
Q ss_pred -----------ccCCCHHHHHHHHHHHHHcCCc
Q 004193 309 -----------EIFLDLTTCAMAFRLLRLNGYD 330 (769)
Q Consensus 309 -----------~~~~Dl~~tAl~FrlLR~~Gy~ 330 (769)
...+|+..||.+...|...|..
T Consensus 532 ~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~ 564 (621)
T TIGR01787 532 CFSYEDPSYVGSGGSTPSQTGWALMALIAAGEA 564 (621)
T ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHcCcc
Confidence 0136899999999999988753
No 19
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=97.07 E-value=0.038 Score=66.41 Aligned_cols=238 Identities=16% Similarity=0.093 Sum_probs=134.7
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhccccccCc-----cCCCCc
Q 004193 78 PQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGI-GEEQMNKGIQFIMSNFASVTDE-----KQQTPI 151 (769)
Q Consensus 78 p~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~-~~~~i~~g~~fl~~~~~~~~~~-----~~~~~v 151 (769)
..+++||+.+|.+||+||... ++|.-+++||..-+. .+..++|++++|.+-++.-.|. ....++
T Consensus 239 ~~~~~~i~~~q~~~g~~~~~~----------~~~~l~~lal~~~g~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~~s~~ 308 (634)
T cd02892 239 RKAYEWILYRDENTGYLGIIP----------PPKANNMLALWVLGYPDSPAFKRHLERIDDFLWLGPEGMKMCQTNGSQV 308 (634)
T ss_pred HHHHHHHHHHhcCCCceeeee----------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcEEEecCCcEEEcCCCCch
Confidence 478999999999999999642 466777888888774 5588999999999987543121 111121
Q ss_pred eEEEehhhHHHHH-HHcCCCCCCCchhHHHHHHHhHHHh-c----------ccc---------CCCCc--hhHHHHHhhc
Q 004193 152 GFDIIFPGMIECA-QDLNLNLPLRSSDINAMLERRHLEL-N----------RNY---------TAGRK--EYLAYVSEGI 208 (769)
Q Consensus 152 gfeii~P~ll~~a-~~~gl~~~~~~~~~~~l~~~r~~kL-~----------~~~---------~~~~p--~~llhslE~~ 208 (769)
+ =-++.-.| .+.|+.=++.+...+.+.=+.+... . ..+ .+..| -..+.++.+|
T Consensus 309 w----DTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL 384 (634)
T cd02892 309 W----DTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL 384 (634)
T ss_pred H----HHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHH
Confidence 1 11222111 2246432233322222211222221 0 011 01233 1224445554
Q ss_pred cCC---------cc---h----HHHhhccccCCCccc---------------------------ChhhHHHHHhc-----
Q 004193 209 GKL---------QD---W----EMVMKYQRKNGSLFN---------------------------SPSTTAAALTH----- 240 (769)
Q Consensus 209 ~~~---------~d---~----~~v~~~~~~~GS~~~---------------------------SPsaTAa~l~~----- 240 (769)
... ++ . +=+...|..||++.. ++..||+++..
T Consensus 385 ~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~ 464 (634)
T cd02892 385 LRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFG 464 (634)
T ss_pred HHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhc
Confidence 211 11 1 114457888998862 23457777664
Q ss_pred -cCC----------cchHHHHHHHHHHhCCCCCCcCCc-chHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhc-CC
Q 004193 241 -FHN----------AGCLHYLSSLLEKFGNAVPTVHPL-DIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQ-GE 307 (769)
Q Consensus 241 -~~d----------~~~~~YL~~~~~~~~g~VP~~yP~-~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~-~~ 307 (769)
..+ ++|.+||.+..+.- |+-...+-. ..+...+.+..|..+|..+...+.|+..++.+-+.... |+
T Consensus 465 ~~~~~~r~~i~~~i~rAv~~L~~~Q~~D-GsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGg 543 (634)
T cd02892 465 KLYPGHRREIDPAIRRAVKYLLREQEPD-GSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGG 543 (634)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHccCCC-CCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCC
Confidence 122 35888888865543 322222222 23566778999999998865677888888888775432 21
Q ss_pred --c------------ccCCCHHHHHHHHHHHHHcCCc
Q 004193 308 --E------------EIFLDLTTCAMAFRLLRLNGYD 330 (769)
Q Consensus 308 --~------------~~~~Dl~~tAl~FrlLR~~Gy~ 330 (769)
+ ....++..||.+...|-..|..
T Consensus 544 Wge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~ 580 (634)
T cd02892 544 WGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEP 580 (634)
T ss_pred CCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 0 1134688899999999888864
No 20
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=96.94 E-value=0.00045 Score=63.18 Aligned_cols=79 Identities=27% Similarity=0.430 Sum_probs=50.6
Q ss_pred CCCcchhhhhccc--cCCCCCCCCCchHH--HHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCCh--HH
Q 004193 54 SVSPYDTAWVAMV--PSLELPQAPCFPQC--INWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIGE--EQ 127 (769)
Q Consensus 54 s~S~YDTAwva~v--p~~~~~~~p~Fp~~--~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~~--~~ 127 (769)
.|.+++|+++.+. ..-... .-.++ ++||++.|.+||+|+.... ...-.+-.|..|+.+|..-+... ..
T Consensus 20 ~~~~~~T~~al~aL~~~g~~~---~~~~~~~~~~L~~~q~~dGg~~~~~~---~~~~~~~~t~~~l~~l~~~~~~~~~~~ 93 (113)
T PF13249_consen 20 PSDVWDTAFALLALAALGEEP---DRDRAAAVEWLLSQQNPDGGWGSNPD---GGPPDVYTTYVALAALELLGRPDDEEA 93 (113)
T ss_dssp -BEHHHHHHHHHHHHHHTSHH---CHHHHHHHHHHHHHB-TTSGBBSSTT---TT-BSHHHHHHHHHHHHHHT-GGCHTT
T ss_pred CCCHHHHHHHHHHHHHhCCcc---cHHHHHHHHHHHHhCCCCCCccCCCC---CCCccHHHHHHHHHHHHHcCCCcccHH
Confidence 4689999996443 221111 13467 9999999999999997642 11122455666666666555443 68
Q ss_pred HHHHHHHHHhc
Q 004193 128 MNKGIQFIMSN 138 (769)
Q Consensus 128 i~~g~~fl~~~ 138 (769)
++|+++||.++
T Consensus 94 ~~~a~~~l~~~ 104 (113)
T PF13249_consen 94 VRKAVDWLLSC 104 (113)
T ss_dssp HCCHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999884
No 21
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=96.87 E-value=0.046 Score=65.54 Aligned_cols=240 Identities=18% Similarity=0.147 Sum_probs=134.6
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcC--ChHHHHHHHHHHHhccccccCccCCCCceEEE
Q 004193 78 PQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGI--GEEQMNKGIQFIMSNFASVTDEKQQTPIGFDI 155 (769)
Q Consensus 78 p~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~--~~~~i~~g~~fl~~~~~~~~~~~~~~~vgfei 155 (769)
..|++||+..|.++|+||... .+++-+|+||+.-+. .+..++||+++|++-+..-.+.---.+.|-.+
T Consensus 247 ~~a~~~i~~~~e~~g~~~~i~----------p~~~~~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~s~v 316 (635)
T TIGR01507 247 IRALDWLLERQAGDGSWGGIQ----------PAMFNALIALKILGMTQHDAFIKLGWEGIDLYGVELDDSWMFQACVSPV 316 (635)
T ss_pred HHHHHHHHHHHcCCCceeecc----------hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHheEecCCceEecCCCCcH
Confidence 578999999999999998763 166777777766653 35789999999988765421210000001000
Q ss_pred ehhh-HHHHHHHcCCCCCCCchhHHHHHHHhHHHh----------cccc----C----C-CCch--hHHHHHhhccCC--
Q 004193 156 IFPG-MIECAQDLNLNLPLRSSDINAMLERRHLEL----------NRNY----T----A-GRKE--YLAYVSEGIGKL-- 211 (769)
Q Consensus 156 i~P~-ll~~a~~~gl~~~~~~~~~~~l~~~r~~kL----------~~~~----~----~-~~p~--~llhslE~~~~~-- 211 (769)
-=-+ .+.-+.+.|+.- .++...+...-+++... ...+ . . .+|. .-+.+|+||...
T Consensus 317 WDTa~ai~AL~~ag~~~-~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~ 395 (635)
T TIGR01507 317 WDTALAVLALREAGLPA-DHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRL 395 (635)
T ss_pred HHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCC
Confidence 0011 223333456532 22222222222222211 1111 0 1 1331 223455555321
Q ss_pred -------cchHH----HhhccccCCCccc-------------------------ChhhHHHHHhc---cCC-------cc
Q 004193 212 -------QDWEM----VMKYQRKNGSLFN-------------------------SPSTTAAALTH---FHN-------AG 245 (769)
Q Consensus 212 -------~d~~~----v~~~~~~~GS~~~-------------------------SPsaTAa~l~~---~~d-------~~ 245 (769)
-.+++ +...|..||++.+ +|.-||.+++. .++ .+
T Consensus 396 ~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~r 475 (635)
T TIGR01507 396 PDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIER 475 (635)
T ss_pred CccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHH
Confidence 01222 4557889998843 33448877664 121 36
Q ss_pred hHHHHHHHHHHhCCCCCCcCC-cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhc-CC--c------------c
Q 004193 246 CLHYLSSLLEKFGNAVPTVHP-LDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQ-GE--E------------E 309 (769)
Q Consensus 246 ~~~YL~~~~~~~~g~VP~~yP-~~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~-~~--~------------~ 309 (769)
|.+||.+..+.-|+-... |- ..++....++-.|...|++.. .+.|+..++.+.+..+. |+ + .
T Consensus 476 av~~L~~~Q~~dG~W~g~-wg~~~~Y~T~~al~aL~~~g~~~~-~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~ 553 (635)
T TIGR01507 476 AVEYLKREQEPDGSWFGR-WGVNYLYGTGAVLSALKAVGIDTR-EPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGK 553 (635)
T ss_pred HHHHHHHccCCCCCCccC-CCCccccHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCC
Confidence 899999876554542221 22 224566677888889999854 67899999998776432 21 0 0
Q ss_pred cCCCHHHHHHHHHHHHHcCCc
Q 004193 310 IFLDLTTCAMAFRLLRLNGYD 330 (769)
Q Consensus 310 ~~~Dl~~tAl~FrlLR~~Gy~ 330 (769)
-..|+..||.+...|+..|..
T Consensus 554 g~s~~s~TA~AL~AL~~ag~~ 574 (635)
T TIGR01507 554 GASTASQTAWALIALIAAGRA 574 (635)
T ss_pred CCCcHHHHHHHHHHHHHhCCC
Confidence 136888999999999998854
No 22
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=96.70 E-value=0.0018 Score=59.23 Aligned_cols=54 Identities=28% Similarity=0.526 Sum_probs=41.2
Q ss_pred HHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCChHHHHHH--HHHHHhccc
Q 004193 81 INWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIGEEQMNKG--IQFIMSNFA 140 (769)
Q Consensus 81 ~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~~~~i~~g--~~fl~~~~~ 140 (769)
|+||+..|.+|||||... ..-.+..|..|+.||......++ .+++ ++||.++..
T Consensus 1 v~~L~~~Q~~dGgw~~~~-----~~~~~~~T~~al~aL~~~g~~~~-~~~~~~~~~L~~~q~ 56 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFG-----GPSDVWDTAFALLALAALGEEPD-RDRAAAVEWLLSQQN 56 (113)
T ss_dssp HHHHHHHB-TTSSBBSST-----S-BEHHHHHHHHHHHHHHTSHHC-HHHHHHHHHHHHHB-
T ss_pred CHhhHHHcCCCCCCcCCC-----CCCCHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHhCC
Confidence 689999999999999731 23578889999999999876543 5555 999998654
No 23
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=96.70 E-value=0.049 Score=57.05 Aligned_cols=237 Identities=19% Similarity=0.147 Sum_probs=125.7
Q ss_pred cCCCcchhhhhccccCCC-------CCCCCCchHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhc---
Q 004193 53 LSVSPYDTAWVAMVPSLE-------LPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWG--- 122 (769)
Q Consensus 53 ~s~S~YDTAwva~vp~~~-------~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~--- 122 (769)
.......|++..+.-... +.........++||++.|.+||+|+....+. .-.+-.|..++.||..-+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~---~~~~~~T~~~~~~l~~~~~~~ 99 (300)
T cd00688 23 CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGND---YPSLWLTAYALKALLLAGDYI 99 (300)
T ss_pred CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCC---CcchHhHHHHHHHHHHcCCcc
Confidence 344566777755442211 1234567789999999999999999654211 345678999999998754
Q ss_pred -CChHHHHHHHHHHHhccccccCccCCCCceEEEehhhHHHHHHHcCCCCCCCchhHHHHHHHhHHHhccccCCCCchhH
Q 004193 123 -IGEEQMNKGIQFIMSNFASVTDEKQQTPIGFDIIFPGMIECAQDLNLNLPLRSSDINAMLERRHLELNRNYTAGRKEYL 201 (769)
Q Consensus 123 -~~~~~i~~g~~fl~~~~~~~~~~~~~~~vgfeii~P~ll~~a~~~gl~~~~~~~~~~~l~~~r~~kL~~~~~~~~p~~l 201 (769)
.....++|++.||.++-.. +. ||.-..+.. +- .+...+.. ..-..+
T Consensus 100 ~~~~~~~~~~~~~l~~~q~~--dG------~~~~~~~~~-------~~-~~~~~~~~-----------------~~t~~a 146 (300)
T cd00688 100 AVDRIDLARALNWLLSLQNE--DG------GFREDGPGN-------HR-IGGDESDV-----------------RLTAYA 146 (300)
T ss_pred ccCHHHHHHHHHHHHHccCC--CC------CeeeecCCC-------Cc-ccCCCCcc-----------------cHHHHH
Confidence 3457899999999887321 10 221111000 00 00000000 000111
Q ss_pred HHHHhhccCC---cchHH----HhhccccCCCc----ccChhhHHHHHhc---cCC------cchHHHHHHHHHHhCCCC
Q 004193 202 AYVSEGIGKL---QDWEM----VMKYQRKNGSL----FNSPSTTAAALTH---FHN------AGCLHYLSSLLEKFGNAV 261 (769)
Q Consensus 202 lhslE~~~~~---~d~~~----v~~~~~~~GS~----~~SPsaTAa~l~~---~~d------~~~~~YL~~~~~~~~g~V 261 (769)
+.+|-.++.. .+.++ +.+.|..+|++ ..+|..||+++.. .++ .++.+||.......+|..
T Consensus 147 l~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~ 226 (300)
T cd00688 147 LIALALLGKLDPDPLIEKALDYLLSCQNYDGGFGPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWG 226 (300)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCcCCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcC
Confidence 1222111111 01122 33345556653 2456666666554 232 457777777554444432
Q ss_pred CC----cCCcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhh-cC----CcccCCCHHHHHHHHHHHHH
Q 004193 262 PT----VHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWL-QG----EEEIFLDLTTCAMAFRLLRL 326 (769)
Q Consensus 262 P~----~yP~~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~-~~----~~~~~~Dl~~tAl~FrlLR~ 326 (769)
.. .++.+.....|.+-.|..+|.. ...+.++.+.+.+-+... .| .+....|...|+.++.+|..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~aL~~~~~~-~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 227 EGRDRTNKLSDSCYTEWAAYALLALGKL-GDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALSL 299 (300)
T ss_pred ccccCCCCcCchHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchhhHHHHHHHhc
Confidence 22 3466777888889999988863 112244444444443211 11 12334578899998888754
No 24
>PLN03012 Camelliol C synthase
Probab=96.42 E-value=0.011 Score=71.38 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHhc-CCC-----cCCCcchhhhh--ccccCC-CCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCcc---
Q 004193 36 CFQRTKERTEKMFD-KIE-----LSVSPYDTAWV--AMVPSL-ELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWL--- 103 (769)
Q Consensus 36 ~~~~~~~~i~~~~~-~g~-----~s~S~YDTAwv--a~vp~~-~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~--- 103 (769)
.+...++-|++.-+ +|. ..+=.|=|+|| |++..- +....+.--..++||++.|++|||||+.-.+-+.
T Consensus 591 ~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y 670 (759)
T PLN03012 591 FIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIY 670 (759)
T ss_pred HHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccc
Confidence 45555666666554 331 24567999995 555331 2122355667999999999999999976321111
Q ss_pred -----chhHHhhhHHHHHHHHhhcCC---hHHHHHHHHHHHh
Q 004193 104 -----VKDAVLCTLACVLALKRWGIG---EEQMNKGIQFIMS 137 (769)
Q Consensus 104 -----~~d~l~~Tla~vlAL~~w~~~---~~~i~~g~~fl~~ 137 (769)
..--+++|.=||+||..-+-. +..|+||++||-+
T Consensus 671 ~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~ 712 (759)
T PLN03012 671 IAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIIN 712 (759)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 124568999999999987632 2589999999987
No 25
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=96.25 E-value=0.011 Score=65.03 Aligned_cols=104 Identities=20% Similarity=0.306 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHhc-CCCc-----CCCcchhhhhccccCCCC--CCCCCchHHHHHHHHcCCCCCCCCCCCCC---C---
Q 004193 36 CFQRTKERTEKMFD-KIEL-----SVSPYDTAWVAMVPSLEL--PQAPCFPQCINWLLDNQVNDGSWGLHNRP---S--- 101 (769)
Q Consensus 36 ~~~~~~~~i~~~~~-~g~~-----s~S~YDTAwva~vp~~~~--~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~---~--- 101 (769)
.++..++.+++... +|.. +...|.||++.+.=...| ...+.....++||++.|.+||+|+..... +
T Consensus 192 ~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~ 271 (348)
T cd02889 192 AIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYA 271 (348)
T ss_pred HHHHHHHHHHHhCCCCCCccccCCCcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCccccccccccc
Confidence 34444555554444 4432 246799999744322122 23455678999999999999999853100 0
Q ss_pred ccchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhcc
Q 004193 102 WLVKDAVLCTLACVLALKRWGI-GEEQMNKGIQFIMSNF 139 (769)
Q Consensus 102 ~~~~d~l~~Tla~vlAL~~w~~-~~~~i~~g~~fl~~~~ 139 (769)
....-.+..|..+|+||..... ....++|++.||.++-
T Consensus 272 ~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~~Q 310 (348)
T cd02889 272 GGGRSTVVQTAWALLALMAAGEPDSEAVKRGVKYLLNTQ 310 (348)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence 0012267889999999999753 3468999999999864
No 26
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=96.21 E-value=0.14 Score=55.00 Aligned_cols=59 Identities=24% Similarity=0.241 Sum_probs=44.5
Q ss_pred CchHHHHHHHHcC-CCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcC---ChHHHHHHHHHHHhc
Q 004193 76 CFPQCINWLLDNQ-VNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGI---GEEQMNKGIQFIMSN 138 (769)
Q Consensus 76 ~Fp~~~~wil~~Q-~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~---~~~~i~~g~~fl~~~ 138 (769)
....+++||+..| .+||+|+.... ..-.+..|.+|+.+|.--+. ....+++.++||.+.
T Consensus 48 ~~~~~i~~l~~~q~~~~Ggf~~~~~----~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~ 110 (286)
T cd02890 48 NKDEIIDFIYSCQVNEDGGFGGGPG----QDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSL 110 (286)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCC----CCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHh
Confidence 4568999999999 99999987521 23467799999999887653 334566788888765
No 27
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=96.17 E-value=0.014 Score=63.13 Aligned_cols=86 Identities=23% Similarity=0.314 Sum_probs=60.7
Q ss_pred CCCcchhhhhccc--cCCCC--CCCCCchHHHHHHHHcCCCCCCCCCCCCCCcc-------chhHHhhhHHHHHHHHhhc
Q 004193 54 SVSPYDTAWVAMV--PSLEL--PQAPCFPQCINWLLDNQVNDGSWGLHNRPSWL-------VKDAVLCTLACVLALKRWG 122 (769)
Q Consensus 54 s~S~YDTAwva~v--p~~~~--~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~-------~~d~l~~Tla~vlAL~~w~ 122 (769)
.+|+|-||-|.++ ....+ ......-.+++||+..|.+||+|+..+. .. ....+..|.-|++||.+-+
T Consensus 77 ~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~--~~~~~~~~~~~~~~~~TA~vl~aL~~~g 154 (292)
T cd02897 77 SGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGR--VFHKAMQGGVDDEVALTAYVLIALLEAG 154 (292)
T ss_pred CcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCc--ccChhhcCCCCCCcchHHHHHHHHHhcC
Confidence 5588999997444 22121 2223456799999999999999996531 11 1134567999999999976
Q ss_pred CC--hHHHHHHHHHHHhcccc
Q 004193 123 IG--EEQMNKGIQFIMSNFAS 141 (769)
Q Consensus 123 ~~--~~~i~~g~~fl~~~~~~ 141 (769)
.. +..|+||++||.++...
T Consensus 155 ~~~~~~~i~~a~~yL~~~~~~ 175 (292)
T cd02897 155 LPSERPVVEKALSCLEAALDS 175 (292)
T ss_pred CccccHHHHHHHHHHHHhccc
Confidence 53 36799999999997664
No 28
>PLN02993 lupeol synthase
Probab=96.06 E-value=0.02 Score=69.26 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHhc-CCCc-----CCCcchhhhh--ccccCC-CCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCc----
Q 004193 36 CFQRTKERTEKMFD-KIEL-----SVSPYDTAWV--AMVPSL-ELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSW---- 102 (769)
Q Consensus 36 ~~~~~~~~i~~~~~-~g~~-----s~S~YDTAwv--a~vp~~-~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~---- 102 (769)
.++..++-|++.-+ +|.- .+=+|=|++| ||+-.- .....|.--.+++||++.|++||+||+.-.+-.
T Consensus 591 ~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y 670 (763)
T PLN02993 591 SIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRY 670 (763)
T ss_pred HHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCccc
Confidence 44555555665544 4432 3456889884 564321 111235567899999999999999997521100
Q ss_pred c----chhHHhhhHHHHHHHHhhcCC---hHHHHHHHHHHHhc
Q 004193 103 L----VKDAVLCTLACVLALKRWGIG---EEQMNKGIQFIMSN 138 (769)
Q Consensus 103 ~----~~d~l~~Tla~vlAL~~w~~~---~~~i~~g~~fl~~~ 138 (769)
. ..--+.+|.=|++||..-+.. +..|+||++||.+.
T Consensus 671 ~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~ 713 (763)
T PLN02993 671 IPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITS 713 (763)
T ss_pred ccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Confidence 1 123468999999999987632 25899999999763
No 29
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=96.05 E-value=0.014 Score=63.43 Aligned_cols=88 Identities=22% Similarity=0.272 Sum_probs=60.2
Q ss_pred CcCCCcchhhhhcccc----CCCCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCccc----------hhHHhhhHHHHHH
Q 004193 52 ELSVSPYDTAWVAMVP----SLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLV----------KDAVLCTLACVLA 117 (769)
Q Consensus 52 ~~s~S~YDTAwva~vp----~~~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~----------~d~l~~Tla~vlA 117 (769)
.-.+|++.||-|.++= ..........-+.++||+.+|.+||+|+.... +.. ...+..|.=+++|
T Consensus 76 ~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~--~~~~~m~gg~~~~~~~~~lTA~vl~a 153 (297)
T cd02896 76 NRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSP--VIHREMTGGVEGSEGDVSLTAFVLIA 153 (297)
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCC--ccChhccCCccccCCCccchHHHHHH
Confidence 3367899999875552 11122222345689999999999999996631 111 1246678899999
Q ss_pred HHhhcCC--------hHHHHHHHHHHHhcccc
Q 004193 118 LKRWGIG--------EEQMNKGIQFIMSNFAS 141 (769)
Q Consensus 118 L~~w~~~--------~~~i~~g~~fl~~~~~~ 141 (769)
|..-+.. ...|.||++||.++...
T Consensus 154 L~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~ 185 (297)
T cd02896 154 LQEARSICPPEVQNLDQSIRKAISYLENQLPN 185 (297)
T ss_pred HHhhhccccccchhhHHHHHHHHHHHHHhccc
Confidence 9987531 24799999999997654
No 30
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=95.81 E-value=0.015 Score=61.01 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHhc-CCCc-------CCCcchhhhhccccC-CCC---CCCCCchHHHHHHHHcCCCCCCCCCCCCCC
Q 004193 34 NLCFQRTKERTEKMFD-KIEL-------SVSPYDTAWVAMVPS-LEL---PQAPCFPQCINWLLDNQVNDGSWGLHNRPS 101 (769)
Q Consensus 34 ~~~~~~~~~~i~~~~~-~g~~-------s~S~YDTAwva~vp~-~~~---~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~ 101 (769)
...++..++.|.++.. +|.. .+++++||++.+.=. ... ...+.-...++||+..|.+||+|+......
T Consensus 51 ~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~ 130 (300)
T cd00688 51 DENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGN 130 (300)
T ss_pred hHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCC
Confidence 4556667777777644 4433 568899999755522 111 123345678999999999999998553210
Q ss_pred c---cchhHHhhhHHHHHHHHhhcCC--hHHHHHHHHHHHhccc
Q 004193 102 W---LVKDAVLCTLACVLALKRWGIG--EEQMNKGIQFIMSNFA 140 (769)
Q Consensus 102 ~---~~~d~l~~Tla~vlAL~~w~~~--~~~i~~g~~fl~~~~~ 140 (769)
. .....+..|..++.||..-+.. ...+.+++.||.++..
T Consensus 131 ~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~ 174 (300)
T cd00688 131 HRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQN 174 (300)
T ss_pred CcccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhc
Confidence 0 1135667789999999887654 4689999999998854
No 31
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=95.54 E-value=0.033 Score=59.33 Aligned_cols=107 Identities=19% Similarity=0.227 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHhc-CCCc-------CCCcchhhhhccc----cCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCc
Q 004193 35 LCFQRTKERTEKMFD-KIEL-------SVSPYDTAWVAMV----PSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSW 102 (769)
Q Consensus 35 ~~~~~~~~~i~~~~~-~g~~-------s~S~YDTAwva~v----p~~~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~ 102 (769)
..++..++.|.++-+ +|.. .+++|.||.|.++ ........+..-.+++||+..|.+||+|+.......
T Consensus 49 ~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~ 128 (282)
T cd02891 49 EYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIH 128 (282)
T ss_pred HHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccC
Confidence 345555556665544 4433 6799999996444 122222334577899999999999999986532000
Q ss_pred -----cchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhcccc
Q 004193 103 -----LVKDAVLCTLACVLALKRWGI-GEEQMNKGIQFIMSNFAS 141 (769)
Q Consensus 103 -----~~~d~l~~Tla~vlAL~~w~~-~~~~i~~g~~fl~~~~~~ 141 (769)
...+.+-.|.-++.+|.+-+. .+..+.+++.||.++...
T Consensus 129 ~~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~ 173 (282)
T cd02891 129 REMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG 173 (282)
T ss_pred HhhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc
Confidence 012344568888888887653 246899999999988754
No 32
>PLN03012 Camelliol C synthase
Probab=95.32 E-value=0.025 Score=68.32 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=44.0
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcC---ChHHHHHHHHHHHhc
Q 004193 78 PQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGI---GEEQMNKGIQFIMSN 138 (769)
Q Consensus 78 p~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~---~~~~i~~g~~fl~~~ 138 (769)
-.+++||+..|.+||||++.=+ ....+ .|.+||.||..-+. ....|+||++||.+.
T Consensus 593 ~rAv~~L~~~Q~~DGsW~G~Wg--v~y~Y---gT~~aL~aL~a~g~~~~~~~~Irrav~fLls~ 651 (759)
T PLN03012 593 KKAAEYIENIQMLDGSWYGNWG--ICFTY---GTWFALAGLAAAGKTFNDCEAIRKGVHFLLAA 651 (759)
T ss_pred HHHHHHHHHhcCCCCCCccccc--ccCCc---HHHHHHHHHHHhCccCCCcHHHHHHHHHHHHh
Confidence 3489999999999999997532 22223 79999999998664 237899999999863
No 33
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=94.76 E-value=0.038 Score=42.51 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=28.0
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHH
Q 004193 78 PQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALK 119 (769)
Q Consensus 78 p~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~ 119 (769)
.+..+||+..|.+||+|+.... ...-+..|.-|+.||+
T Consensus 4 ~~~~~~l~~~Q~~dGGf~~~~~----~~~d~~~t~~~~~~L~ 41 (44)
T PF00432_consen 4 EKLIRFLLSCQNPDGGFGGRPG----GESDTCYTYCALAALS 41 (44)
T ss_dssp HHHHHHHHHTBBTTSSBBSSTT----SSBBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCC----CCCChHHHHHHHHHHH
Confidence 5779999999999999986632 1234566777776664
No 34
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=94.75 E-value=0.31 Score=53.48 Aligned_cols=182 Identities=16% Similarity=0.182 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhhhhhccCCCCHHHHHHHHHHhhhcCcchhccCCC--hhHHHHHHHHHhhHHHHHHHHhhhcccchhHHH
Q 004193 519 SWAKNAVLTTIVDDFYDLGGSEEELLNLIDLLERWDVEEAKNCCS--EQVEIIFSALRSTICEFGDKTLTWQGRNATSHI 596 (769)
Q Consensus 519 ~~aK~~~l~tviDD~fD~~gt~eEl~~ft~aierWD~~~~~~l~p--eymk~~f~aL~~~~~ei~~~~~~~qgr~v~~yl 596 (769)
.++-..+.++++||.=|.. .+.++.|.+-+..=.. . .- | ..+...+.-+..-+..++..+.- ++..+++
T Consensus 88 ~isi~~tY~~~lDD~~~e~--~~~m~~f~~dL~~G~~--q-kh-P~l~~v~~~l~~~lr~fGpF~s~~Ii---kSTLdFv 158 (357)
T cd00686 88 DLSIHYTYTLVLDDSKDDP--YPTMVNYFDDLQAGRE--Q-AH-PWWALVNEHFPNVLRHFGPFCSLNLI---RSTLDFF 158 (357)
T ss_pred HHHHHHheeeEeccccccc--chHHHHHHHHHhcCCC--C-CC-cHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHH
Confidence 4555567778899997654 3566677665543111 1 11 2 23444444444445554333221 2345666
Q ss_pred HHHHHh---CCCCCChhhhhhhhccccchhhhHHHHhhhcCCCCchhhhcC-ccchhHHHHHHHHhh---hccccccchh
Q 004193 597 VETCLR---NKSVPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRD-PEFHNLYKLVSTCGR---LLNDIQGFKR 669 (769)
Q Consensus 597 ~e~W~~---~g~vPt~eEYl~~a~vS~g~~~~~l~~~~~~G~~l~~e~~~~-~~~~~L~~~~~~I~R---L~NDi~S~k~ 669 (769)
...|.. -+.-|.-.+|-+-.+.=+|++-+.. .+ ..|++.+.- ..|..+..+...+.. ++|||.||=|
T Consensus 159 ~g~~iEq~nf~~~p~A~~fP~ylR~ksGl~E~yA-~F-----iFPk~~FpE~~~~~qi~~AIp~~~~~i~~~NDILSFYK 232 (357)
T cd00686 159 EGCWIEQYNFGGFPGSHDYPQFLRRMNGLGHCVG-AS-----LWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYK 232 (357)
T ss_pred HHHHHhhhccCCCCCCcccchHHHhccCCcceeE-EE-----ecchhhCchHhhHHHhhHHHHHHHHHHHhhhhhhheeh
Confidence 666762 2224544444444444455544321 11 234444443 224555555555544 8899999999
Q ss_pred hhcCCC-C-CeeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004193 670 ESKEGK-L-NSVSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKEE 718 (769)
Q Consensus 670 E~~rG~-~-n~V~cyMke~gg~vS~EeA~~~i~~~ie~~wkeln~~~l~~~ 718 (769)
|.-.|+ - |.|.-|.+.+| +|..+|.+.+..-.-.+-+++. .+|.++
T Consensus 233 Ee~~~~E~~n~V~Nya~~~G--iS~~eAL~~lt~dTv~~s~rv~-~VLse~ 280 (357)
T cd00686 233 EFDDERDQISLVKNYVVSDE--ISLHEALEKLTQDTLHSSKQMV-AVFSDK 280 (357)
T ss_pred hhcccccccchHHHhhhhcC--CCHHHHHHHHHHHHHHHHHHHH-HHhcCC
Confidence 886544 3 88888888899 9999999876554444444543 356544
No 35
>PLN02993 lupeol synthase
Probab=94.40 E-value=0.063 Score=65.07 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=42.9
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCC---hHHHHHHHHHHHhc
Q 004193 78 PQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIG---EEQMNKGIQFIMSN 138 (769)
Q Consensus 78 p~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~---~~~i~~g~~fl~~~ 138 (769)
-.+++||+..|.+||||.+.=+ ....+ .|.+||.||..-+.. ...|+||+.||.+.
T Consensus 593 ~rAv~yL~~~Q~~DGSW~G~Wg--v~y~Y---gT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~ 651 (763)
T PLN02993 593 EKAVQFIESKQTPDGSWYGNWG--ICFIY---ATWFALGGLAAAGKTYNDCLAMRKGVHFLLTI 651 (763)
T ss_pred HHHHHHHHHhcCCCCCcccccc--cccCc---HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 3579999999999999965422 23333 899999999876543 26899999999864
No 36
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=93.94 E-value=0.058 Score=57.07 Aligned_cols=92 Identities=21% Similarity=0.341 Sum_probs=61.9
Q ss_pred CCcCCCcchhhhhccc----cCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCC--CCccc---hhHHhhhHHHHHHHHhh
Q 004193 51 IELSVSPYDTAWVAMV----PSLELPQAPCFPQCINWLLDNQVNDGSWGLHNR--PSWLV---KDAVLCTLACVLALKRW 121 (769)
Q Consensus 51 g~~s~S~YDTAwva~v----p~~~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~--~~~~~---~d~l~~Tla~vlAL~~w 121 (769)
+.-++|.+=||.|.++ ...-......--+.++||+.+|.+||+|.+.+. +.... .+.+.-|.=+++||..-
T Consensus 21 ~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~ 100 (246)
T PF07678_consen 21 SDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEA 100 (246)
T ss_dssp TTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHC
T ss_pred cCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhh
Confidence 3447788899998665 222222222234789999999999999986532 11111 36788899999999986
Q ss_pred c-C-------ChHHHHHHHHHHHhccccc
Q 004193 122 G-I-------GEEQMNKGIQFIMSNFASV 142 (769)
Q Consensus 122 ~-~-------~~~~i~~g~~fl~~~~~~~ 142 (769)
+ + ....|+||+.||++++...
T Consensus 101 ~~~~~~~~~~~~~~i~kA~~~L~~~~~~~ 129 (246)
T PF07678_consen 101 GSLCDSEKPEYENAINKALNYLERHLDNI 129 (246)
T ss_dssp HCCHTTTHHCHHHHHHHHHHHHHHHHGCT
T ss_pred hhhccccchhhHHHHHHHHHHHHHhcccc
Confidence 4 1 2378999999999985554
No 37
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=93.00 E-value=3.4 Score=45.45 Aligned_cols=208 Identities=14% Similarity=0.149 Sum_probs=116.5
Q ss_pred chHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhccccccCccCCCCceEEE
Q 004193 77 FPQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGI-GEEQMNKGIQFIMSNFASVTDEKQQTPIGFDI 155 (769)
Q Consensus 77 Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~-~~~~i~~g~~fl~~~~~~~~~~~~~~~vgfei 155 (769)
.-.+++||+..|.+||+++...+ ...-+.+|.+|+.+|.--+. ..-..++.+.||.+.-.. |. ||--
T Consensus 58 ~~~~i~~l~~cq~~~GGF~~~~~----~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~--dG------gF~~ 125 (316)
T PLN03201 58 RDEVVSWVMRCQHESGGFGGNTG----HDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNE--DG------SFSG 125 (316)
T ss_pred HHHHHHHHHHhcCCCCCcCCCCC----CcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCC--CC------CccC
Confidence 46899999999999999986543 12367889999888866431 111234577887764211 10 2210
Q ss_pred ehhhHHHHHHHcC-CCCCCCchhHHHHHHHhHHHhccccCCCCchhHHHHHhhccCCcchHH----HhhccccCCCcccC
Q 004193 156 IFPGMIECAQDLN-LNLPLRSSDINAMLERRHLELNRNYTAGRKEYLAYVSEGIGKLQDWEM----VMKYQRKNGSLFNS 230 (769)
Q Consensus 156 i~P~ll~~a~~~g-l~~~~~~~~~~~l~~~r~~kL~~~~~~~~p~~llhslE~~~~~~d~~~----v~~~~~~~GS~~~S 230 (769)
- .-| -+..+.-.++. .++.+..+. .+|.++ |...|..||.|...
T Consensus 126 ~---------~~ge~D~r~ty~a~a---------------------~l~LL~~~~-~i~~~~~~~~i~scq~~dGGF~~~ 174 (316)
T PLN03201 126 D---------EWGEIDTRFSYCALC---------------------CLSLLKRLD-KINVEKAVDYIVSCKNFDGGFGCT 174 (316)
T ss_pred C---------CCCCccHHHHHHHHH---------------------HHHHhCccc-hhHHHHHHHHHHHhcCCCCCcCCC
Confidence 0 000 00000000000 011111110 022222 33467788999887
Q ss_pred hh------hHHHHHhc--------cCC-cchHHHHHHHHHHhC--CCCCCcCCcchHHHHHHHHHHHhcCCCCCcHHHHH
Q 004193 231 PS------TTAAALTH--------FHN-AGCLHYLSSLLEKFG--NAVPTVHPLDIYINLTMVESLESLGVDRHFRTEIK 293 (769)
Q Consensus 231 Ps------aTAa~l~~--------~~d-~~~~~YL~~~~~~~~--g~VP~~yP~~~fe~l~~VdtL~rlGi~~hF~~EI~ 293 (769)
|- .|++++.. .-| ++...||.+-+...| ++-|+.. .|..-.-|++.+|.=||-...+.. +
T Consensus 175 p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~-~D~cys~w~~a~L~ll~~~~~~d~--~ 251 (316)
T PLN03201 175 PGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKL-PDVCYSWWVLSSLIIIDRVHWIDK--D 251 (316)
T ss_pred CCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCC-CchHHHHHHHHHHHHhccccccCH--H
Confidence 72 24343321 123 345566666443223 5677644 577888999999999986544422 3
Q ss_pred HHHHHHHHhhhc--C----CcccCCCHHHHHHHHHHHHHcCCc
Q 004193 294 RVLDETYRFWLQ--G----EEEIFLDLTTCAMAFRLLRLNGYD 330 (769)
Q Consensus 294 ~~L~~~~~~~~~--~----~~~~~~Dl~~tAl~FrlLR~~Gy~ 330 (769)
.+...+.++... | .++-.+|++.|-.+.-.|.+.|++
T Consensus 252 ~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~ 294 (316)
T PLN03201 252 KLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYP 294 (316)
T ss_pred HHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCC
Confidence 445556555432 1 356678999999999999999873
No 38
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=92.66 E-value=0.27 Score=52.90 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHhc-CCCcCCCc---chh-----hhhccccCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCccch
Q 004193 35 LCFQRTKERTEKMFD-KIELSVSP---YDT-----AWVAMVPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVK 105 (769)
Q Consensus 35 ~~~~~~~~~i~~~~~-~g~~s~S~---YDT-----Awva~vp~~~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~ 105 (769)
...+.+++.|++..+ +|....+. +|+ |-.++. -.+....+..+.+++||++.|.+||+||...+. .
T Consensus 98 ~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~-ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~----e 172 (286)
T cd02890 98 IDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILS-LLNILTDIDKEKLIDYILSCQNYDGGFGGVPGA----E 172 (286)
T ss_pred hhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHH-HhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCC----C
Confidence 345667888888766 56555443 344 322221 122222456889999999999999999964210 0
Q ss_pred hHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhcc
Q 004193 106 DAVLCTLACVLALKRWGI-GEEQMNKGIQFIMSNF 139 (769)
Q Consensus 106 d~l~~Tla~vlAL~~w~~-~~~~i~~g~~fl~~~~ 139 (769)
-....|..|+.+|+-=+. ....+++.++||.+.-
T Consensus 173 s~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q 207 (286)
T cd02890 173 SHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQ 207 (286)
T ss_pred CCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhC
Confidence 123345556666655443 2456889999998764
No 39
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=92.33 E-value=0.73 Score=51.33 Aligned_cols=180 Identities=16% Similarity=0.217 Sum_probs=90.0
Q ss_pred CCch-hHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHhhhcCcchhccCCChhHHHHHHHHHhhHHHHHHHHhhhcc
Q 004193 511 PELS-DARMSWAKNAVLTTIVDDFYDLGGSEEELLNLIDLLERWDVEEAKNCCSEQVEIIFSALRSTICEFGDKTLTWQG 589 (769)
Q Consensus 511 Pe~s-~~Rl~~aK~~~l~tviDD~fD~~gt~eEl~~ft~aierWD~~~~~~l~peymk~~f~aL~~~~~ei~~~~~~~qg 589 (769)
|..+ +.++.++=..++++++||.++.. .+++..|-+-+-.=.. + +. .+..++.+.+.++ .+..|
T Consensus 79 ~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~Gq~----Q--~~---p~L~~~~~~L~~~----~~~fg 143 (376)
T PF06330_consen 79 PHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLILGQP----Q--KH---PLLDGFASLLREM----WRHFG 143 (376)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHHT---------SS---HHHHHHHHHHHHH----HTTS-
T ss_pred CCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhcCCC----C--CC---HHHHHHHHHHHHH----HHHcc
Confidence 4443 56778888999999999998754 4777777665533111 0 10 1222222222222 11112
Q ss_pred c--------chhHHHHHHHHhC---C---CCCChhhhhhhhccccchhhhHHHHhhhcCCCCchhhhcC-ccchhHHHHH
Q 004193 590 R--------NATSHIVETCLRN---K---SVPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRD-PEFHNLYKLV 654 (769)
Q Consensus 590 r--------~v~~yl~e~W~~~---g---~vPt~eEYl~~a~vS~g~~~~~l~~~~~~G~~l~~e~~~~-~~~~~L~~~~ 654 (769)
. +..+++...|... + .-|.+-+|+. .=+|++.... .+. .|++.+.. ..+..++.+.
T Consensus 144 pf~anmI~~STLdFi~g~~LE~~~f~~~p~A~~FP~fLR---~ktGlsEaYA-~Fi-----FPk~~fpe~~~~~~y~~AI 214 (376)
T PF06330_consen 144 PFCANMIVKSTLDFINGCWLEQKNFHGSPGAPDFPDFLR---RKTGLSEAYA-FFI-----FPKALFPEVEYFIQYTPAI 214 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT----TT-TTHHHHHH---HHHH-HHHHH-HHT-------TTTS-TTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCCCCCCccccHHHH---hccCcchhhe-eee-----cccccCChHHHHHHHHHHH
Confidence 1 2344554455511 1 1234556653 2335444422 222 23333322 2234433344
Q ss_pred HHH---hhhccccccchhhhc-CCCC-CeeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004193 655 STC---GRLLNDIQGFKRESK-EGKL-NSVSLQMTYSDGNMTEVEAIEKIKVVIKSTRRELLRLVLKE 717 (769)
Q Consensus 655 ~~I---~RL~NDi~S~k~E~~-rG~~-n~V~cyMke~gg~vS~EeA~~~i~~~ie~~wkeln~~~l~~ 717 (769)
..+ .-++|||.||=||.- .|+. |.|.-+-.-+| +|.-+|.+.+....-.+-+++.+ +|.+
T Consensus 215 pdl~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g--~S~~eaL~~l~~eti~a~~rv~~-vL~~ 279 (376)
T PF06330_consen 215 PDLMRFINYVNDILSFYKEELVAGETGNYIHNRARVHG--VSILEALRELTDETIEAVERVRR-VLSD 279 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHhhhhHHHHHHhhcccccccchhhhhhhccC--CCHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 444 458999999999977 6677 99977777788 99999988864444444444433 3443
No 40
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.62 E-value=4.3 Score=41.98 Aligned_cols=234 Identities=18% Similarity=0.208 Sum_probs=131.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhccccccCccCCCCceEEEehh
Q 004193 79 QCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIGEEQMNKGIQFIMSNFASVTDEKQQTPIGFDIIFP 158 (769)
Q Consensus 79 ~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~~~~i~~g~~fl~~~~~~~~~~~~~~~vgfeii~P 158 (769)
..++||-..|++||+..--.. ..|.|-+|-=||=.+..-+....+-+|-++||.+++... .+| |-
T Consensus 10 rvi~fi~~RrhedGGy~f~~~----Lpdti~~TyYAi~i~s~lg~evPr~EktiefL~d~~qt~-------~~~----~a 74 (274)
T COG1689 10 RVIEFIEKRRHEDGGYCFVSQ----LPDTINDTYYAIKIYSLLGHEVPRKEKTIEFLYDQMQTA-------GVG----VA 74 (274)
T ss_pred HHHHHHHHhhcCCCCeEEecc----CcchhhhhhhhhhhhhhcCCcCchHHHHHHHHHHHHHHh-------hhH----HH
Confidence 468999999999999974421 236677777776666555555678999999999976532 334 33
Q ss_pred hHHHHHHHcCCCCCCCchhHHHHHHHhHHHhccccCCCCchhHHHHHhhccCCcchHHHhhccccCCCcccChhhHHHHH
Q 004193 159 GMIECAQDLNLNLPLRSSDINAMLERRHLELNRNYTAGRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPSTTAAAL 238 (769)
Q Consensus 159 ~ll~~a~~~gl~~~~~~~~~~~l~~~r~~kL~~~~~~~~p~~llhslE~~~~~~d~~~v~~~~~~~GS~~~SPsaTAa~l 238 (769)
.-++-++-+|.+.+-.. ...|.++...+.|.+ | ++++++.-. |+.+-+--|++.
T Consensus 75 ~~~~~l~~lg~~d~~r~----------~~~l~~~~~~~~e~K--f-~~~lggs~~-------------f~t~~~Le~ty~ 128 (274)
T COG1689 75 MAIEFLRILGAKDLARN----------KMLLLFLKYNPLEEK--F-AVGLGGSEE-------------FGTATPLEATYW 128 (274)
T ss_pred HHHHHHHHhcccccchh----------hHHHHHhhcCchhHH--H-hhhcCceee-------------cCCCchHHHHHH
Confidence 34444555665544222 222222222233432 2 366777521 333322233333
Q ss_pred h----cc----CCcchHHHHHHHHHHhCCCC--CCcCCcchHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHhhhc
Q 004193 239 T----HF----HNAGCLHYLSSLLEKFGNAV--PTVHPLDIYINLTMVESLESLGVD---RHFRTEIKRVLDETYRFWLQ 305 (769)
Q Consensus 239 ~----~~----~d~~~~~YL~~~~~~~~g~V--P~~yP~~~fe~l~~VdtL~rlGi~---~hF~~EI~~~L~~~~~~~~~ 305 (769)
| +. .+++--.-..+.++++++++ -..-| +.-+....+.+|-.+|+- +||+.- . -.|..
T Consensus 129 ~~~~l~~~n~~~~eE~k~~v~~~~re~~~g~~YGv~~p-nt~~t~~aly~l~~k~~~~~v~~Fe~~-------c-~~~Gg 199 (274)
T COG1689 129 MMSALNMVNYEYLEEMKEKVIEFVREFGIGDAYGVTHP-NTTMTYQALYTLGSKGPKEEVRHFELC-------C-GDWGG 199 (274)
T ss_pred HHHHHHHhCcCchHHHHHHHHHHhhhhccccccccCCc-chHHHHHHHHhhccccchHHHHhHHhc-------c-ccCCC
Confidence 3 21 24666667777778875332 22223 334456667777777764 344221 0 11221
Q ss_pred ---CCcccCCCHHHHHHHHHHHHHcCCc--ccchh-hhccc--ccCCccccccccccchHHHHHHHhh
Q 004193 306 ---GEEEIFLDLTTCAMAFRLLRLNGYD--VSSDP-LTQFA--EDNQFCNSLKGYLKDISAVLELYRA 365 (769)
Q Consensus 306 ---~~~~~~~Dl~~tAl~FrlLR~~Gy~--VS~dv-f~~F~--~~g~F~~~~~e~~~dv~~lL~Ly~A 365 (769)
-..+.++=+.+|=-|||.|..+|-. +|.-. |..-. .+|.|+-+. .-.++..=+-|+|
T Consensus 200 f~~~P~syPPYiE~t~ya~r~lelL~~k~~i~~~~rFI~slqN~nGGFRRS~---~~GISt~e~tYrA 264 (274)
T COG1689 200 FTEVPNSYPPYIEPTFYALRGLELLGGKYCISDHIRFIRSLQNQNGGFRRSY---ELGISTFENTYRA 264 (274)
T ss_pred cccCCCCCCCccchHHHHHhHHHHHccCcCchHHHHHHHHhhcCCCCeeeeE---eccccchHHHHHH
Confidence 1134567789999999999999877 44432 33222 459998776 3445555555555
No 41
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=90.63 E-value=1.4 Score=48.15 Aligned_cols=210 Identities=18% Similarity=0.155 Sum_probs=108.9
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCCh--HHH--HHHHHHHHhccccccCccCCCCceE
Q 004193 78 PQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIGE--EQM--NKGIQFIMSNFASVTDEKQQTPIGF 153 (769)
Q Consensus 78 p~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~~--~~i--~~g~~fl~~~~~~~~~~~~~~~vgf 153 (769)
...++||...|.+||+.+...+ ..--+.+|.+|+.+|.--+..+ ..| ++.++||.+--.. | =||
T Consensus 50 ~~~i~~i~~~q~~~GgF~~~~~----~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~--d------Ggf 117 (299)
T cd02893 50 DDVISFLRRCQNPSGGFGGGPG----QLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQP--D------GSF 117 (299)
T ss_pred HHHHHHHHHhcCCCCCCCCCCC----CCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCC--C------CCe
Confidence 5899999999999999986532 2346889999999887765321 233 3477787663211 1 022
Q ss_pred EEehhhHHHHHHHcCCCCCCCchhHHHHHHHhHHHhccccCCCCchhHHHHHhhccCCcchHHHhhccccCCCcccChh-
Q 004193 154 DIIFPGMIECAQDLNLNLPLRSSDINAMLERRHLELNRNYTAGRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPS- 232 (769)
Q Consensus 154 eii~P~ll~~a~~~gl~~~~~~~~~~~l~~~r~~kL~~~~~~~~p~~llhslE~~~~~~d~~~v~~~~~~~GS~~~SPs- 232 (769)
-.. |. .+.++.+-|-. +. -..|-. ..+. +-....++| +...|..+|.|...|-
T Consensus 118 ~~~-~~-----~e~D~r~tyca--va------~~~lL~----~~~~------~~~~~~~~~--l~~cQ~~dGGF~~~p~~ 171 (299)
T cd02893 118 RMH-VG-----GEVDVRGTYCA--IS------VASLLN----ILTD------ELFEGVAEY--ILSCQTYEGGFGGVPGN 171 (299)
T ss_pred eCC-CC-----CCchHhHHHHH--HH------HHHHhC----CCch------hhHHHHHHH--HHHcCCCCCCcCCCCCC
Confidence 221 10 00000000000 00 000000 0000 001112223 4456777888887773
Q ss_pred -----hHHHHHhc-----c---CC-cchHHHHHHHHHHh--C-CCCCCcCCcchHHHHHHHHHHHhcCCCCCcH------
Q 004193 233 -----TTAAALTH-----F---HN-AGCLHYLSSLLEKF--G-NAVPTVHPLDIYINLTMVESLESLGVDRHFR------ 289 (769)
Q Consensus 233 -----aTAa~l~~-----~---~d-~~~~~YL~~~~~~~--~-g~VP~~yP~~~fe~l~~VdtL~rlGi~~hF~------ 289 (769)
.|.+++.. . .| +++.+||.+-.... | ++-|...| |..-.-|+..+|.-+|-.+...
T Consensus 172 e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~-D~cys~w~~a~l~ll~~~~~~~~~~~~~ 250 (299)
T cd02893 172 EAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLV-DGCYSFWVGGSLPILEAILNAEKKFDDS 250 (299)
T ss_pred CCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCC-ccHHHHHHHHHHHHHHHHhccccccccc
Confidence 34444322 1 22 56888988766553 2 45676555 5555677777776666432110
Q ss_pred -----HHHHHHHHHHHHhhh--cC----CcccCCCHHHHHHHHHHHHH
Q 004193 290 -----TEIKRVLDETYRFWL--QG----EEEIFLDLTTCAMAFRLLRL 326 (769)
Q Consensus 290 -----~EI~~~L~~~~~~~~--~~----~~~~~~Dl~~tAl~FrlLR~ 326 (769)
-.-+.+.+.|..+-. .| .++..+|++.|++++-.|.+
T Consensus 251 ~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~~Lsl 298 (299)
T cd02893 251 AEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALSGLSI 298 (299)
T ss_pred ccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHHHHhc
Confidence 011233444543221 11 34567899999999887753
No 42
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=90.08 E-value=18 Score=39.15 Aligned_cols=207 Identities=15% Similarity=0.145 Sum_probs=111.1
Q ss_pred hHHHHHHHHcC-CCCCCCCCCCCCCccchhHHhhhHHHHHHHHhh---cCChHHHHHHHHHHHhccccccCccCCCCceE
Q 004193 78 PQCINWLLDNQ-VNDGSWGLHNRPSWLVKDAVLCTLACVLALKRW---GIGEEQMNKGIQFIMSNFASVTDEKQQTPIGF 153 (769)
Q Consensus 78 p~~~~wil~~Q-~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w---~~~~~~i~~g~~fl~~~~~~~~~~~~~~~vgf 153 (769)
...++||+..| .+||+++...++ . --+.+|++|+.+|.-- +.-+...++.+.||.+. ..- | =||
T Consensus 52 ~~~i~fl~~~q~~~~GgF~~~~~~---~-~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~-q~~-d------Ggf 119 (287)
T cd02894 52 EEIIEFVKSCQDNEDGGFGGSPGH---D-PHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGL-QNE-D------GSF 119 (287)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCC---c-chHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH-cCC-C------CCe
Confidence 58899999999 779999865321 1 2578899998887742 21123478888998763 111 1 022
Q ss_pred EEehhhHHHHHHHcC-CCCCCCchhHHHHHHHhHHHhccccCCCCchhHHHHHhhccCCcchHHHhhccccCCCcccChh
Q 004193 154 DIIFPGMIECAQDLN-LNLPLRSSDINAMLERRHLELNRNYTAGRKEYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPS 232 (769)
Q Consensus 154 eii~P~ll~~a~~~g-l~~~~~~~~~~~l~~~r~~kL~~~~~~~~p~~llhslE~~~~~~d~~~v~~~~~~~GS~~~SPs 232 (769)
=-. | -| -++.+.-.++..| .+ |.+.. . .. ....++| +...|..||.|..+|-
T Consensus 120 ~~~-~--------~~e~d~~~ty~a~~~l-~l----l~~~~--~-----i~----~~~~~~~--l~~~q~~dGGF~~~~~ 172 (287)
T cd02894 120 SGD-K--------WGEVDTRFSYCAVLCL-TL----LGKLD--L-----ID----VDKAVDY--LLSCYNFDGGFGCRPG 172 (287)
T ss_pred ecC-C--------CCCchHHHHHHHHHHH-HH----hCCcc--h-----hh----HHHHHHH--HHHcCCCCCCcCCCCC
Confidence 110 0 00 0000000001111 00 00000 0 00 0111222 4456788999998882
Q ss_pred h------HHHHHhc------c--CC-cchHHHHHHHHHHhC--CCCCCcCCcchHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 004193 233 T------TAAALTH------F--HN-AGCLHYLSSLLEKFG--NAVPTVHPLDIYINLTMVESLESLGVDRHFRTEIKRV 295 (769)
Q Consensus 233 a------TAa~l~~------~--~d-~~~~~YL~~~~~~~~--g~VP~~yP~~~fe~l~~VdtL~rlGi~~hF~~EI~~~ 295 (769)
. |+++... . .| +++.+||.+-...-| ++.|.. +.|..-.-|.+.+|.-+|-.... .-+.+
T Consensus 173 ~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k-~~D~~ysf~~~a~l~~l~~~~~~--~~~~l 249 (287)
T cd02894 173 AESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEK-LPDVCYSWWVLSSLKIIGRLHWI--NKNKL 249 (287)
T ss_pred CCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCC-CCchhHhhHHHHHHHHhcccccc--CHHHH
Confidence 2 3333221 1 12 568888876443323 456754 45677778999999988865322 23444
Q ss_pred HHHHHHhhh--cC----CcccCCCHHHHHHHHHHHHH
Q 004193 296 LDETYRFWL--QG----EEEIFLDLTTCAMAFRLLRL 326 (769)
Q Consensus 296 L~~~~~~~~--~~----~~~~~~Dl~~tAl~FrlLR~ 326 (769)
.+.+.++.. .| .++-.+|+.-|..+.-.|.+
T Consensus 250 ~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl 286 (287)
T cd02894 250 KNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSL 286 (287)
T ss_pred HHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHh
Confidence 555555432 11 34556899999999877754
No 43
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=89.92 E-value=15 Score=40.19 Aligned_cols=212 Identities=16% Similarity=0.112 Sum_probs=114.5
Q ss_pred hHHHHHHHHcC----CCCCCCCCCCCC------CccchhHHhhhHHHHHHHHhhcCChH--HHHHHHHHHHhccccccCc
Q 004193 78 PQCINWLLDNQ----VNDGSWGLHNRP------SWLVKDAVLCTLACVLALKRWGIGEE--QMNKGIQFIMSNFASVTDE 145 (769)
Q Consensus 78 p~~~~wil~~Q----~~DGsWg~~~~~------~~~~~d~l~~Tla~vlAL~~w~~~~~--~i~~g~~fl~~~~~~~~~~ 145 (769)
...++||...| .+||+.++..++ .....--+..|.+|+.+|.--+.... ..++-+.||.+--.. |.
T Consensus 52 ~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~--dG 129 (307)
T cd02895 52 DDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLP--DG 129 (307)
T ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCC--CC
Confidence 47899999999 999999864321 11234678888888888765432212 245667777764110 10
Q ss_pred cCCCCceEEEehhhHHHHHHHcCCCCCCCchhHHHHHHHhHHHhccccCCCCchhHHHHHhhcc-CCcchHH----Hhhc
Q 004193 146 KQQTPIGFDIIFPGMIECAQDLNLNLPLRSSDINAMLERRHLELNRNYTAGRKEYLAYVSEGIG-KLQDWEM----VMKY 220 (769)
Q Consensus 146 ~~~~~vgfeii~P~ll~~a~~~gl~~~~~~~~~~~l~~~r~~kL~~~~~~~~p~~llhslE~~~-~~~d~~~----v~~~ 220 (769)
||--. |. -+...+. .|-.=.+ ...++.|..+. ..+|.++ |...
T Consensus 130 ------gF~~~-~~-----------~~~~e~d------~r~ty~A--------v~~l~lL~~~~~~~~d~~~li~~l~s~ 177 (307)
T cd02895 130 ------SFGSV-LD-----------SEGGEND------MRFCYCA--------VAICYMLDDWSEEDIDKEKLIDYIKSS 177 (307)
T ss_pred ------CccCC-cC-----------CcCCCcc------HHHHHHH--------HHHHHHhCCCccccccHHHHHHHHHHc
Confidence 22110 00 0011110 1110000 01112111111 1234444 4557
Q ss_pred cccCCCcccCh------hhHHHHHh-----cc------CC-cchHHHHHHHHHHhC--CCCCCcCCcchHHHHHHHHHHH
Q 004193 221 QRKNGSLFNSP------STTAAALT-----HF------HN-AGCLHYLSSLLEKFG--NAVPTVHPLDIYINLTMVESLE 280 (769)
Q Consensus 221 ~~~~GS~~~SP------saTAa~l~-----~~------~d-~~~~~YL~~~~~~~~--g~VP~~yP~~~fe~l~~VdtL~ 280 (769)
|..||+|..+| ..|-+++. .. -| +++.+||.+-....| ++.|.. +.|..-.-|.+.+|.
T Consensus 178 Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k-~~D~cysfw~~a~L~ 256 (307)
T cd02895 178 QSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNK-PADTCYSFWVGASLK 256 (307)
T ss_pred cCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCC-CCccchhhHHHHHHH
Confidence 78899999998 33332222 11 11 458888877554443 567765 446677788999998
Q ss_pred hcCCCCCcHHHHHHHHHHHHHhhh---c---CCcccCCCHHHHHHHHHHHHH
Q 004193 281 SLGVDRHFRTEIKRVLDETYRFWL---Q---GEEEIFLDLTTCAMAFRLLRL 326 (769)
Q Consensus 281 rlGi~~hF~~EI~~~L~~~~~~~~---~---~~~~~~~Dl~~tAl~FrlLR~ 326 (769)
=||-...+ ..+.+.+.|.++.. + +.++-.+|+..|-.++-.|.+
T Consensus 257 iL~~~~~i--d~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Lsl 306 (307)
T cd02895 257 LLDAFQLI--DFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSL 306 (307)
T ss_pred HcCccccc--CHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHHh
Confidence 88754323 23344555554431 1 246667899999888877754
No 44
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=86.92 E-value=1.8 Score=46.77 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhc-CCCcCCCcch---h-----hh--hccccCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCccch
Q 004193 37 FQRTKERTEKMFD-KIELSVSPYD---T-----AW--VAMVPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVK 105 (769)
Q Consensus 37 ~~~~~~~i~~~~~-~g~~s~S~YD---T-----Aw--va~vp~~~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~ 105 (769)
.+.+++.|++... +|..+.+... + |+ ++++-.. ...--..+++||++.|.+||+||...+ ..
T Consensus 102 ~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~---~~i~~~~~~~~l~~~q~~dGGF~~~~~---~e- 174 (287)
T cd02894 102 KEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKL---DLIDVDKAVDYLLSCYNFDGGFGCRPG---AE- 174 (287)
T ss_pred HHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCc---chhhHHHHHHHHHHcCCCCCCcCCCCC---CC-
Confidence 4556666666544 5655555333 3 33 2333222 222357999999999999999986532 11
Q ss_pred hHHhhhHHHHHHHHhhcCC-hHHHHHHHHHHHhc
Q 004193 106 DAVLCTLACVLALKRWGIG-EEQMNKGIQFIMSN 138 (769)
Q Consensus 106 d~l~~Tla~vlAL~~w~~~-~~~i~~g~~fl~~~ 138 (769)
--...|-.||.+|.--+.- ...+++..+||.+.
T Consensus 175 s~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~ 208 (287)
T cd02894 175 SHAGQIFCCVGALAILGSLDLIDRDRLGWWLCER 208 (287)
T ss_pred CchhHHHHHHHHHHHcCcccccCHHHHHHHHHHh
Confidence 1246677777777775432 23477788888754
No 45
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=85.90 E-value=1.9 Score=45.93 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhh----cCChHHHHHHHHHHHhcc
Q 004193 79 QCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRW----GIGEEQMNKGIQFIMSNF 139 (769)
Q Consensus 79 ~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w----~~~~~~i~~g~~fl~~~~ 139 (769)
+.+++|+..|.+|||||--.+.+ . -..--|.-++.+|... .+.+..|.||+.||.+.-
T Consensus 53 ~~~~~l~~~Q~~dGgf~~w~~~~--~-~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q 114 (282)
T cd02891 53 KGYQRLLTYQRSDGSFSAWGNSD--S-GSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQ 114 (282)
T ss_pred HHHHHHHhhcCCCCCccccCCCC--C-CchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 67999999999999998553211 1 1223377778888754 244578999999999873
No 46
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=85.82 E-value=4 Score=44.04 Aligned_cols=108 Identities=20% Similarity=0.143 Sum_probs=74.9
Q ss_pred HHHhhccccCCCccc--------ChhhHHHHHhc----c----CC----cchHHHHHHHHHHhCCCCCC-----------
Q 004193 215 EMVMKYQRKNGSLFN--------SPSTTAAALTH----F----HN----AGCLHYLSSLLEKFGNAVPT----------- 263 (769)
Q Consensus 215 ~~v~~~~~~~GS~~~--------SPsaTAa~l~~----~----~d----~~~~~YL~~~~~~~~g~VP~----------- 263 (769)
.+++.+|..||||.. ||--||.+++. . -| .++++||.+..+ -+|+...
T Consensus 56 ~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~-~dG~f~~~~~~~~~~~~~ 134 (292)
T cd02897 56 QRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQK-SNGCFREVGRVFHKAMQG 134 (292)
T ss_pred HHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC-CCCCCCCCCcccChhhcC
Confidence 566778999999842 44567877554 1 11 358889987633 3343331
Q ss_pred cCCcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHcCC
Q 004193 264 VHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGY 329 (769)
Q Consensus 264 ~yP~~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FrlLR~~Gy 329 (769)
..|.++.-..+++-.|.+.|... ..+.|+..++.+.+.... ..+.+++|++-.+|...|.
T Consensus 135 ~~~~~~~~TA~vl~aL~~~g~~~-~~~~i~~a~~yL~~~~~~-----~~~~y~~al~a~AL~~~~~ 194 (292)
T cd02897 135 GVDDEVALTAYVLIALLEAGLPS-ERPVVEKALSCLEAALDS-----ISDPYTLALAAYALTLAGS 194 (292)
T ss_pred CCCCCcchHHHHHHHHHhcCCcc-ccHHHHHHHHHHHHhccc-----CCCHHHHHHHHHHHHHcCC
Confidence 12334456789999999999775 457888888888875421 3588999999999999984
No 47
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=84.08 E-value=1.2 Score=48.21 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=36.0
Q ss_pred chHHHHHHHHcCCCCCCCCCCCC-------CCccchhHHhhhHHHHHHHHhhc--------C-------ChHHHHHHHHH
Q 004193 77 FPQCINWLLDNQVNDGSWGLHNR-------PSWLVKDAVLCTLACVLALKRWG--------I-------GEEQMNKGIQF 134 (769)
Q Consensus 77 Fp~~~~wil~~Q~~DGsWg~~~~-------~~~~~~d~l~~Tla~vlAL~~w~--------~-------~~~~i~~g~~f 134 (769)
|-.+++|||.-|.++|+|..-.. +-...=|..+ .++.+|.... + -..+|+||+.|
T Consensus 69 ~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~---~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ 145 (290)
T TIGR02474 69 ARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMV---NVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIEC 145 (290)
T ss_pred HHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHH---HHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHH
Confidence 56789999999999999984321 0011223333 4555554321 1 12688999999
Q ss_pred HHh
Q 004193 135 IMS 137 (769)
Q Consensus 135 l~~ 137 (769)
|.+
T Consensus 146 ILk 148 (290)
T TIGR02474 146 ILK 148 (290)
T ss_pred HHH
Confidence 875
No 48
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=70.48 E-value=5.7 Score=47.42 Aligned_cols=51 Identities=27% Similarity=0.396 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHh-hcCC-----hHHHHHHHHHHHh
Q 004193 79 QCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKR-WGIG-----EEQMNKGIQFIMS 137 (769)
Q Consensus 79 ~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~-w~~~-----~~~i~~g~~fl~~ 137 (769)
.+++||-..|++||||-+. =+++=|.+..-|+.- |..| ...|.||+.||-+
T Consensus 593 ~av~~ie~~Q~~DGSWyGs--------WgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~ 649 (760)
T KOG0497|consen 593 KAVEFIEKLQLPDGSWYGS--------WGVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLS 649 (760)
T ss_pred HHHHHHHHcCCCCCcccch--------hhHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHh
Confidence 5688999999999999776 467778887777765 4433 3789999999865
No 49
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=67.87 E-value=22 Score=38.60 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=74.9
Q ss_pred hHHHhhccccCCCccc------ChhhHHHHHhc------cC--C----cchHHHHHHHHHHhCCCCCCcCC---------
Q 004193 214 WEMVMKYQRKNGSLFN------SPSTTAAALTH------FH--N----AGCLHYLSSLLEKFGNAVPTVHP--------- 266 (769)
Q Consensus 214 ~~~v~~~~~~~GS~~~------SPsaTAa~l~~------~~--d----~~~~~YL~~~~~~~~g~VP~~yP--------- 266 (769)
..+++.+|..||||.. |+=-||.++.. .. | .++.+||.+. ++.+|+.+...|
T Consensus 58 ~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~-Q~~dG~f~e~~~~~~~~m~gg 136 (297)
T cd02896 58 YQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISN-QKPDGSFQEPSPVIHREMTGG 136 (297)
T ss_pred HHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCCCCeeCCCCCccChhccCC
Confidence 3677788999998853 23345555443 11 2 2477888886 444444443332
Q ss_pred -----cchHHHHHHHHHHHhcCCCCC-----cHHHHHHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHcCCcccchhh
Q 004193 267 -----LDIYINLTMVESLESLGVDRH-----FRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYDVSSDPL 336 (769)
Q Consensus 267 -----~~~fe~l~~VdtL~rlGi~~h-----F~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FrlLR~~Gy~VS~dvf 336 (769)
.++--..+++-.|.+.|-... ....|...++.+.+.... ..+.+.+|+.-.+|.+.|.+-....+
T Consensus 137 ~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~-----~~~~Y~~Al~ayALal~~~~~~~~a~ 211 (297)
T cd02896 137 VEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN-----LQRPYALAITAYALALADSPLSHAAN 211 (297)
T ss_pred ccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc-----CCChHHHHHHHHHHHHcCChhhHHHH
Confidence 234456889999999986432 355777778888775421 35889999999999999976444333
No 50
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=57.43 E-value=33 Score=37.57 Aligned_cols=98 Identities=13% Similarity=0.065 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhc-CCCcCCCc------chhhhh--cc--ccCCCCCC--CCCchHHHHHHHHcCCCCCCCCCCCCCCcc
Q 004193 37 FQRTKERTEKMFD-KIELSVSP------YDTAWV--AM--VPSLELPQ--APCFPQCINWLLDNQVNDGSWGLHNRPSWL 103 (769)
Q Consensus 37 ~~~~~~~i~~~~~-~g~~s~S~------YDTAwv--a~--vp~~~~~~--~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~ 103 (769)
.+.+++-|+++.. +|.++... .|+.=+ |. ..-++... ..-....++||+.-|..||++|...+.
T Consensus 114 r~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~--- 190 (307)
T cd02895 114 RKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGL--- 190 (307)
T ss_pred HHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCC---
Confidence 3556777777655 66666543 343321 11 11122211 234678999999999999999854321
Q ss_pred chhHHhhhHHHHHHHHhhcCC----hHHHHHHHHHHHhc
Q 004193 104 VKDAVLCTLACVLALKRWGIG----EEQMNKGIQFIMSN 138 (769)
Q Consensus 104 ~~d~l~~Tla~vlAL~~w~~~----~~~i~~g~~fl~~~ 138 (769)
..| .-.|--|+.+|+--+.- ...+++.++||.+.
T Consensus 191 Esh-~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~r 228 (307)
T cd02895 191 ESH-GGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHR 228 (307)
T ss_pred Ccc-ccHHHHHHHHHHHcCCccccccccHHHHHHHHHHh
Confidence 011 12454444444443321 24566777777654
No 51
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=56.60 E-value=15 Score=40.57 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhc-CCCcCCC---cchh--hhhcc--ccCCCCCCCCCchHHHHHHHHcCCCCCCCCCCCCCCccchhHH
Q 004193 37 FQRTKERTEKMFD-KIELSVS---PYDT--AWVAM--VPSLELPQAPCFPQCINWLLDNQVNDGSWGLHNRPSWLVKDAV 108 (769)
Q Consensus 37 ~~~~~~~i~~~~~-~g~~s~S---~YDT--Awva~--vp~~~~~~~p~Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l 108 (769)
.+.+++.|+++.+ +|..+.+ ..|+ ++-|+ ..-++.....-...+++||++-|.+||+||...+. . --.
T Consensus 106 ~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~---e-sh~ 181 (316)
T PLN03201 106 ADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGG---E-SHA 181 (316)
T ss_pred HHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCC---C-Ccc
Confidence 3446666666655 5555543 3455 33222 22222111122468999999999999999954210 0 111
Q ss_pred hhhHHHHHHHHhh
Q 004193 109 LCTLACVLALKRW 121 (769)
Q Consensus 109 ~~Tla~vlAL~~w 121 (769)
..|-.|+-||+--
T Consensus 182 g~T~caiaaL~ll 194 (316)
T PLN03201 182 GQIFCCVGALAIT 194 (316)
T ss_pred ceehHHHHHHHHc
Confidence 2355566566543
No 52
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=55.29 E-value=1.5e+02 Score=31.19 Aligned_cols=214 Identities=12% Similarity=0.128 Sum_probs=94.2
Q ss_pred HHHHHHhccccCCCchhHHHHHHHHHHHHHhhhhhccCCCCHH----HHHHHHHHhhhcCcchhccCCChhHHHHHHHHH
Q 004193 499 YCYFSVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSEE----ELLNLIDLLERWDVEEAKNCCSEQVEIIFSALR 574 (769)
Q Consensus 499 e~Yf~aaa~~fEPe~s~~Rl~~aK~~~l~tviDD~fD~~gt~e----El~~ft~aierWD~~~~~~l~peymk~~f~aL~ 574 (769)
.+||+++- |-| ...|-.+.-+-.+.-.+||+-|.....+ -|+-+-++++..-.+..+.. +.....+..+|.
T Consensus 6 ~sf~~a~~--~lP--~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~-~~~~~pv~~~l~ 80 (267)
T PF00494_consen 6 RSFYLASL--LLP--KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSL-PEPSHPVARALA 80 (267)
T ss_dssp HHHHHHHT--TS---HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHH-HSSHHHHHHHHH
T ss_pred ccHHHHHH--HCC--HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhcc-CCCcCHHHHHHH
Confidence 34554443 335 3445555556777788899998665322 24445555544221111111 333456666666
Q ss_pred hhHHHHHHHHhhhcccchhHHHHHH---HHhCCCCCChhhhhhhhccccchhhhHHHHhhhcCCCCchhhhcCccchhHH
Q 004193 575 STICEFGDKTLTWQGRNATSHIVET---CLRNKSVPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRDPEFHNLY 651 (769)
Q Consensus 575 ~~~~ei~~~~~~~qgr~v~~yl~e~---W~~~g~vPt~eEYl~~a~vS~g~~~~~l~~~~~~G~~l~~e~~~~~~~~~L~ 651 (769)
.+.....-. +....-+.+. +....-++|++|+..-...+.|.--.++.. .+|..-++ .......
T Consensus 81 ~~~~~~~l~------~~~l~~li~~~~~dl~~~~~~t~~~L~~Y~~~vag~vg~l~~~--~~~~~~~~-----~~~~~~a 147 (267)
T PF00494_consen 81 DLVRRYGLP------REPLLELIDGMEMDLEFTPYETFADLERYCYYVAGSVGLLLLQ--LLGAHDPD-----EAARDAA 147 (267)
T ss_dssp HHHCCSHHH------HHHHHHHHHHHHHCTT-S--SSHHHHHHHHHHHTHHHHHHHHH--HHHSSTSH-----HHHHHHH
T ss_pred HHHHHHhhh------HHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHH--Hhccccch-----hhHHHHH
Confidence 655442200 0111112222 213344679888888877776643332222 22321111 1122333
Q ss_pred HHHHHHhhhccccccchhh-hcCCCCCeeeeeeecCCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHhccCCC
Q 004193 652 KLVSTCGRLLNDIQGFKRE-SKEGKLNSVSLQMTYSDGNMTEVEAIEK----------IKVVIKSTRRELLRLVLKEEGS 720 (769)
Q Consensus 652 ~~~~~I~RL~NDi~S~k~E-~~rG~~n~V~cyMke~gg~vS~EeA~~~----------i~~~ie~~wkeln~~~l~~~~~ 720 (769)
...+..+-+.|=+...... ..+|.+=.=.=.|.+|| +|.++-.+. +..+++.+...+.+..-.-.
T Consensus 148 ~~lG~alql~nilRd~~~D~~~~gR~ylP~d~l~~~g--v~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~-- 223 (267)
T PF00494_consen 148 RALGRALQLTNILRDIPEDALRRGRIYLPLDDLRRFG--VTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLS-- 223 (267)
T ss_dssp HHHHHHHHHHHHHHTHHHH-HHTT---S-HHHHHHTT--SSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcccccCCchhHHHcC--CCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3333333344434444444 45665200001266788 888765332 45555555555544332222
Q ss_pred CC-CHHHHHHHHhhh
Q 004193 721 IV-PRACKDLIWKMS 734 (769)
Q Consensus 721 ~v-p~~~~~~~ln~a 734 (769)
.+ |+.++-.+.-.+
T Consensus 224 ~l~~~~~~~~~~~~~ 238 (267)
T PF00494_consen 224 ALPPPRARPAVAAAA 238 (267)
T ss_dssp GS--TTHHHHHHHHH
T ss_pred HcCCHhhhHHHHHHH
Confidence 26 444544434433
No 53
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.90 E-value=1.8e+02 Score=31.81 Aligned_cols=128 Identities=20% Similarity=0.176 Sum_probs=87.0
Q ss_pred hhHHHHHhhccCCcchHHH----hhccccCCCcccCh------hhHHHHHh-----cc-------CCcchHHHHHHHHHH
Q 004193 199 EYLAYVSEGIGKLQDWEMV----MKYQRKNGSLFNSP------STTAAALT-----HF-------HNAGCLHYLSSLLEK 256 (769)
Q Consensus 199 ~~llhslE~~~~~~d~~~v----~~~~~~~GS~~~SP------saTAa~l~-----~~-------~d~~~~~YL~~~~~~ 256 (769)
+++.|.|--+.+ +||+++ +.-|+.||.|..-| -||-|++. .. .+.+-++-+|=+++|
T Consensus 162 ~aI~ymLd~~s~-iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~R 240 (347)
T KOG0367|consen 162 VAICYMLDFWSG-IDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQR 240 (347)
T ss_pred HHHHHHhccccc-cCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHH
Confidence 577888775555 699984 44568899999999 45555543 21 223356677777777
Q ss_pred h--CC---CCCCcCCcchHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhhhcC---CcccCCCHHHHHHHHHHHHHc
Q 004193 257 F--GN---AVPTVHPLDIYINLTMVESLESLGVDRHF-RTEIKRVLDETYRFWLQG---EEEIFLDLTTCAMAFRLLRLN 327 (769)
Q Consensus 257 ~--~g---~VP~~yP~~~fe~l~~VdtL~rlGi~~hF-~~EI~~~L~~~~~~~~~~---~~~~~~Dl~~tAl~FrlLR~~ 327 (769)
. +| |=| --|.|.---.|+..+|.-|+....- ..+.++.|........+| .|+-.+|+..+.++..+|...
T Consensus 241 Q~~sgGfqGR~-NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ 319 (347)
T KOG0367|consen 241 QVSSGGFQGRT-NKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALL 319 (347)
T ss_pred hhccCCcCCCC-CCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHh
Confidence 6 12 333 4577887889999999999988553 345556565554443222 355678999999999999987
Q ss_pred C
Q 004193 328 G 328 (769)
Q Consensus 328 G 328 (769)
|
T Consensus 320 e 320 (347)
T KOG0367|consen 320 E 320 (347)
T ss_pred c
Confidence 7
No 54
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.16 E-value=3.3e+02 Score=29.48 Aligned_cols=208 Identities=18% Similarity=0.203 Sum_probs=114.0
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhc-CChHHHHHHHHHHHhccccccCcc-CCCCceEEE
Q 004193 78 PQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWG-IGEEQMNKGIQFIMSNFASVTDEK-QQTPIGFDI 155 (769)
Q Consensus 78 p~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~-~~~~~i~~g~~fl~~~~~~~~~~~-~~~~vgfei 155 (769)
-+-+.|++.=|+.||+.+...+| -.-|++||+||--|...+ +.-.-..+-.+||...... |.. .-+--| |
T Consensus 69 eeiv~~v~~C~~~~GGfa~~~Gh----d~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~e--dGsF~gD~wG-E- 140 (329)
T KOG0366|consen 69 EEIVSFVLSCQHEDGGFAGCPGH----DPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQE--DGSFSGDIWG-E- 140 (329)
T ss_pred HHHHHHHHheecCCCCcCCCCCC----ChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCc--CCcccCCccc-c-
Confidence 47899999999999999865331 257999999998888876 3223344556677654322 110 000001 1
Q ss_pred ehhhHHHHHHHcCCCCCCCchhHHHHHHHhHHHhccccCCCCchhHHHHHhhcc--CCcchHHHhhccccCCCcccChhh
Q 004193 156 IFPGMIECAQDLNLNLPLRSSDINAMLERRHLELNRNYTAGRKEYLAYVSEGIG--KLQDWEMVMKYQRKNGSLFNSPST 233 (769)
Q Consensus 156 i~P~ll~~a~~~gl~~~~~~~~~~~l~~~r~~kL~~~~~~~~p~~llhslE~~~--~~~d~~~v~~~~~~~GS~~~SPsa 233 (769)
++-.|.-..+..|- -|.+ ||.+- ..+|| +++.-.-||.|++.|-|
T Consensus 141 -------------vDTRfs~~av~~L~-----lLg~-------------ld~~nve~aVd~--~~~CyN~DGGFG~~pGa 187 (329)
T KOG0366|consen 141 -------------VDTRFSYCAVACLA-----LLGK-------------LDTINVEKAVDF--VLSCYNFDGGFGCRPGA 187 (329)
T ss_pred -------------cchhhhHHHHHHHH-----HHhh-------------HHHhhHHHHHHH--HHhhcccCCCcCCCCCc
Confidence 22222222222221 1111 11111 11222 34445578999999976
Q ss_pred HHHHHhc--------------cCC-cchHHHHHHHHHHhC--CCCCCcCCcchHHHHHHHHHHHhcCCCCCc-HHHHHHH
Q 004193 234 TAAALTH--------------FHN-AGCLHYLSSLLEKFG--NAVPTVHPLDIYINLTMVESLESLGVDRHF-RTEIKRV 295 (769)
Q Consensus 234 TAa~l~~--------------~~d-~~~~~YL~~~~~~~~--g~VP~~yP~~~fe~l~~VdtL~rlGi~~hF-~~EI~~~ 295 (769)
-..+-+- .=| ++--.+|..-+-..| +|=|..-| |+--.-|++..|.-.|=-+.. .+++
T Consensus 188 ESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlp-DVCYSwWvlsSL~iigrl~wId~ekL--- 263 (329)
T KOG0366|consen 188 ESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLP-DVCYSWWVLSSLAIIGRLHWIDREKL--- 263 (329)
T ss_pred ccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCc-chhhHHHHHhHHHHhhhhhhccHHHH---
Confidence 4322111 112 222223322111112 56677666 444567888888877754443 2333
Q ss_pred HHHHHHhhhc--C----CcccCCCHHHHHHHHHHHHHcCCc
Q 004193 296 LDETYRFWLQ--G----EEEIFLDLTTCAMAFRLLRLNGYD 330 (769)
Q Consensus 296 L~~~~~~~~~--~----~~~~~~Dl~~tAl~FrlLR~~Gy~ 330 (769)
.+-|+.+... | +++...|+..|--+.--|.+.||+
T Consensus 264 ~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~ 304 (329)
T KOG0366|consen 264 TKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYP 304 (329)
T ss_pred HHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCC
Confidence 4556666432 1 356678999999999999999985
No 55
>PLN02592 ent-copalyl diphosphate synthase
Probab=47.79 E-value=73 Score=39.61 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=47.0
Q ss_pred HhhccccCCCcccCh--------hhHHHHHhc--cCC------cchHHHHHHHHHHhCCCCCCcCCcch-HHHHHHHHHH
Q 004193 217 VMKYQRKNGSLFNSP--------STTAAALTH--FHN------AGCLHYLSSLLEKFGNAVPTVHPLDI-YINLTMVESL 279 (769)
Q Consensus 217 v~~~~~~~GS~~~SP--------saTAa~l~~--~~d------~~~~~YL~~~~~~~~g~VP~~yP~~~-fe~l~~VdtL 279 (769)
|++.|..|||-+.++ .+|+|++.. +|+ ++.++||+.-+.+..+-++...|+-. .--=-|++.+
T Consensus 124 Il~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~rGl~fi~~nl~~~~~~~~~~~pvGFeIifP~LLe~a 203 (800)
T PLN02592 124 IANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHPEKCEKGMSFFRENICKLEDENAEHMPIGFEVAFPSLLEIA 203 (800)
T ss_pred HHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEeeHHHHHHHH
Confidence 567899999998764 677776655 343 35778888877776555565666410 1112356777
Q ss_pred HhcCCCCCc
Q 004193 280 ESLGVDRHF 288 (769)
Q Consensus 280 ~rlGi~~hF 288 (769)
+.+|++--+
T Consensus 204 ~~lgL~~p~ 212 (800)
T PLN02592 204 KNLDIEVPY 212 (800)
T ss_pred HHcCCCCCC
Confidence 899986444
No 56
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=43.72 E-value=34 Score=41.14 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=45.3
Q ss_pred chHHHHHHHHcCCCCCCCCCCCCC-------C-ccchhHHhhhHHHHHHHHhhcC---ChHHHHHHHHHHHh
Q 004193 77 FPQCINWLLDNQVNDGSWGLHNRP-------S-WLVKDAVLCTLACVLALKRWGI---GEEQMNKGIQFIMS 137 (769)
Q Consensus 77 Fp~~~~wil~~Q~~DGsWg~~~~~-------~-~~~~d~l~~Tla~vlAL~~w~~---~~~~i~~g~~fl~~ 137 (769)
=-.++++||..|.+||+||...-+ + .-..--+++|.=|+.||.--+- .+--++||..+|-.
T Consensus 640 irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~lin 711 (760)
T KOG0497|consen 640 IRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLIN 711 (760)
T ss_pred HHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHh
Confidence 346799999999999999976211 1 1135678999999999988652 33478999988764
No 57
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=38.69 E-value=4.5e+02 Score=28.66 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=66.2
Q ss_pred chHHHHHHHHHHhCCCCCCcCCcchHHHH----HHHHHHHhcCCCCCcHHHHHHHHHHHHHhhhc-C----CcccCCCHH
Q 004193 245 GCLHYLSSLLEKFGNAVPTVHPLDIYINL----TMVESLESLGVDRHFRTEIKRVLDETYRFWLQ-G----EEEIFLDLT 315 (769)
Q Consensus 245 ~~~~YL~~~~~~~~g~VP~~yP~~~fe~l----~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~-~----~~~~~~Dl~ 315 (769)
+-.+||.+-+... |..|-.--..++ |.|.+|.=||.. ....+++.+++.|.++..+ | .++..+|+-
T Consensus 3 ~h~~~~~~~l~~~----p~~~~~~d~~~~~~~y~~l~~l~lL~~~-~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~ 77 (299)
T cd02893 3 KHIKYLKKSLRQL----PSSFTSLDASRPWLLYWILHSLELLGEE-LDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLA 77 (299)
T ss_pred HHHHHHHHHhhcC----CccccccccccHHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHH
Confidence 4567877766654 333333233344 456678888862 3355677888889887543 1 233357888
Q ss_pred HHHHHHHHHHHcCCc-----ccchhhhccc-----ccCCccccccccccchH
Q 004193 316 TCAMAFRLLRLNGYD-----VSSDPLTQFA-----EDNQFCNSLKGYLKDIS 357 (769)
Q Consensus 316 ~tAl~FrlLR~~Gy~-----VS~dvf~~F~-----~~g~F~~~~~e~~~dv~ 357 (769)
.|=.|...|.+.|.+ +..+...+|. .+|.|....+. ..|++
T Consensus 78 ~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~-e~D~r 128 (299)
T cd02893 78 TTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGG-EVDVR 128 (299)
T ss_pred HHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCC-CchHh
Confidence 999999999999853 3334344454 35889876532 35654
No 58
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=38.67 E-value=1.6e+02 Score=26.93 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=50.1
Q ss_pred cccChhhHHHHHhc---cCCcchHHHHHHHHHHhCCCCCCcCCcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh
Q 004193 227 LFNSPSTTAAALTH---FHNAGCLHYLSSLLEKFGNAVPTVHPLDIYINLTMVESLESLGVDRHFRTEIKRVLDETYRFW 303 (769)
Q Consensus 227 ~~~SPsaTAa~l~~---~~d~~~~~YL~~~~~~~~g~VP~~yP~~~fe~l~~VdtL~rlGi~~hF~~EI~~~L~~~~~~~ 303 (769)
++.+|-..|++|-. ++|..-..-+..++.+++|- -.-=.+.|+++ +.+|+.+
T Consensus 16 ~l~~ee~ia~yL~~~le~~d~a~i~~alg~var~~GM---------------sqvA~~aGlsR----------e~LYkaL 70 (100)
T COG3636 16 LLTDEEAIAAYLNAALEEGDPALIAAALGVVARSRGM---------------SQVARKAGLSR----------EGLYKAL 70 (100)
T ss_pred HhCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCH---------------HHHHHHhCccH----------HHHHHHh
Confidence 66789999998876 67766666667777887772 22346789887 5789988
Q ss_pred hcCCcccCCCHHHHHHHHHHHHHcCCccc
Q 004193 304 LQGEEEIFLDLTTCAMAFRLLRLNGYDVS 332 (769)
Q Consensus 304 ~~~~~~~~~Dl~~tAl~FrlLR~~Gy~VS 332 (769)
.++++ +-++++.. +++-.|...+
T Consensus 71 S~~GN---Ptf~Til~---V~kAlG~rl~ 93 (100)
T COG3636 71 SPGGN---PTFDTILA---VLKALGLRLS 93 (100)
T ss_pred CCCCC---CcHHHHHH---HHHHcCceee
Confidence 75332 45666654 4455565544
No 59
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=35.75 E-value=49 Score=36.08 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=14.9
Q ss_pred chHHHHHHHHcCCCCCCCCCC
Q 004193 77 FPQCINWLLDNQVNDGSWGLH 97 (769)
Q Consensus 77 Fp~~~~wil~~Q~~DGsWg~~ 97 (769)
|-..|+|||..|.+.|+|...
T Consensus 64 ~~kgl~ylL~aQypnGGWPQ~ 84 (289)
T PF09492_consen 64 FLKGLDYLLKAQYPNGGWPQF 84 (289)
T ss_dssp HHHHHHHHHHHS-TTS--BSE
T ss_pred HHHHHHHHHHhhCCCCCCCcc
Confidence 457799999999999999643
No 60
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=35.22 E-value=5.6e+02 Score=27.04 Aligned_cols=202 Identities=14% Similarity=0.179 Sum_probs=89.7
Q ss_pred HHHHHhccccCCCchhHHHHHHHHHHHHHhhhhhccCCCCH-----HHHHHHHHHhhhcCcchhccCCChhHHHHHHHHH
Q 004193 500 CYFSVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLGGSE-----EELLNLIDLLERWDVEEAKNCCSEQVEIIFSALR 574 (769)
Q Consensus 500 ~Yf~aaa~~fEPe~s~~Rl~~aK~~~l~tviDD~fD~~gt~-----eEl~~ft~aierWD~~~~~~l~peymk~~f~aL~ 574 (769)
+|+++.-. . | ...|-.+.=+-.+.-.+||+=|..... ..|+-+-++++.-... +- +. ..+..+|.
T Consensus 13 sf~~a~~~-l-p--~~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~---~~-~~--~pv~~al~ 82 (265)
T cd00683 13 SFYLASRL-L-P--PELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWG---GA-PT--HPVLRALA 82 (265)
T ss_pred cHHHHHHh-C-C--HHHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHcC---CC-CC--ChHHHHHH
Confidence 45555443 3 4 234444444566777789999865422 2333344444332110 10 11 24566666
Q ss_pred hhHHHHHHHHhhhcccchhHHHHHH---HHhCCCCCChhhhhhhhccccchhhhHHHHhhhcCCCCchhhhcC-ccchhH
Q 004193 575 STICEFGDKTLTWQGRNATSHIVET---CLRNKSVPTLDEYMENAYASFALGPIIFPAVYFVGPKLSEEVVRD-PEFHNL 650 (769)
Q Consensus 575 ~~~~ei~~~~~~~qgr~v~~yl~e~---W~~~g~vPt~eEYl~~a~vS~g~~~~~l~~~~~~G~~l~~e~~~~-~~~~~L 650 (769)
+++.+.. +. +....-+.+. .......||++|...-..-+.|.--. .....+|..-+++.... ...-.-
T Consensus 83 ~~~~~~~--l~----~~~~~~li~g~~~Dl~~~~~~t~~eL~~Y~~~vAg~vg~--l~~~i~~~~~~~~~~~~A~~lG~A 154 (265)
T cd00683 83 DLARRYG--IP----REPFRDLLAGMAMDLDKRRYETLDELDEYCYYVAGVVGL--MLLRVFGASSDEAALERARALGLA 154 (265)
T ss_pred HHHHHcC--CC----HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhHHHHHH--HHHHHhCCCCChHHHHHHHHHHHH
Confidence 6654321 00 0111111222 11344567887777766666553222 22223342112222211 112222
Q ss_pred HHHHHHHhhhccccccchhhhcCCCCCeeeee-----eecCCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHhc
Q 004193 651 YKLVSTCGRLLNDIQGFKRESKEGKLNSVSLQ-----MTYSDGNMTEVEA---------IEKIKVVIKSTRRELLRLVLK 716 (769)
Q Consensus 651 ~~~~~~I~RL~NDi~S~k~E~~rG~~n~V~cy-----Mke~gg~vS~EeA---------~~~i~~~ie~~wkeln~~~l~ 716 (769)
++++|+ +.|+. ....+|- || |.++| +|.|+- ..-+..+++.+.+.+.+..-.
T Consensus 155 lqltni----lRdv~---eD~~~gR-----~YlP~d~l~~~g--v~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 220 (265)
T cd00683 155 LQLTNI----LRDVG---EDARRGR-----IYLPREELARFG--VTLEDLLAPENSPAFRALLRRLIARARAHYREALAG 220 (265)
T ss_pred HHHHHH----HHHHH---HHHccCC-----CcCCHHHHHHcC--CCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333332 23443 2234554 44 66777 776552 233555666666555443322
Q ss_pred cCCCCCCHHHHHHHHhhhh
Q 004193 717 EEGSIVPRACKDLIWKMSK 735 (769)
Q Consensus 717 ~~~~~vp~~~~~~~ln~aR 735 (769)
-. .+|+..+-.++-++.
T Consensus 221 ~~--~lp~~~~~~~~~~~~ 237 (265)
T cd00683 221 LA--ALPRRSRFCVRAAAM 237 (265)
T ss_pred HH--hCCHhhHHHHHHHHH
Confidence 22 378666655555554
No 61
>PLN02710 farnesyltranstransferase subunit beta
Probab=34.96 E-value=67 Score=37.14 Aligned_cols=57 Identities=21% Similarity=0.189 Sum_probs=39.4
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCCh--H--HHHHHHHHHHhc
Q 004193 78 PQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIGE--E--QMNKGIQFIMSN 138 (769)
Q Consensus 78 p~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~~--~--~i~~g~~fl~~~ 138 (769)
..+++||..-|.+||+.|+..+ ..--+.+|.+||.+|.--+..+ + ..++-++||.+.
T Consensus 95 ~~ii~~l~~cQ~~dGGFgg~pg----~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~ 155 (439)
T PLN02710 95 NDTIDFLSRCQDPNGGYGGGPG----QLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRM 155 (439)
T ss_pred HHHHHHHHHhcCCCcCCCCCCC----CCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHc
Confidence 4689999999999999986432 2346888999998887654211 1 234566777654
No 62
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=31.27 E-value=7.2 Score=27.00 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=6.7
Q ss_pred HHHcCCCCCCCCCC
Q 004193 84 LLDNQVNDGSWGLH 97 (769)
Q Consensus 84 il~~Q~~DGsWg~~ 97 (769)
|-..|++||+|--+
T Consensus 5 I~~s~RpDGt~RK~ 18 (27)
T PF09282_consen 5 IPASQRPDGTWRKE 18 (27)
T ss_dssp E--EE-TTS-EE--
T ss_pred cCcccCCCCCcccc
Confidence 44689999999643
No 63
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=27.87 E-value=2.6e+02 Score=31.37 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCC------CcHHHHHHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHcCCc-ccchhhhcc
Q 004193 274 TMVESLESLGVDR------HFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYD-VSSDPLTQF 339 (769)
Q Consensus 274 ~~VdtL~rlGi~~------hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FrlLR~~Gy~-VS~dvf~~F 339 (769)
..++.|.++|+.+ .|.+++ |+.+-| ..+..++--+++.+|..|+. |+.|.+--+
T Consensus 104 ~~l~~l~~~G~nrislGvQS~~~~~---L~~l~R---------~~~~~~~~~ai~~~~~~g~~~v~~Dli~Gl 164 (370)
T PRK06294 104 SYIRALALTGINRISIGVQTFDDPL---LKLLGR---------THSSSKAIDAVQECSEHGFSNLSIDLIYGL 164 (370)
T ss_pred HHHHHHHHCCCCEEEEccccCCHHH---HHHcCC---------CCCHHHHHHHHHHHHHcCCCeEEEEeecCC
Confidence 3467777777763 244443 322221 13677888899999999995 999865544
No 64
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=26.79 E-value=7.9e+02 Score=26.09 Aligned_cols=106 Identities=20% Similarity=0.169 Sum_probs=49.6
Q ss_pred HHHHHhccccCCCchhHHHHHHHHHHHHHhhhhhccCC-CCHHH----HHHHHHHhhhcCcchhccCCChhHHHHHHHHH
Q 004193 500 CYFSVAATLFSPELSDARMSWAKNAVLTTIVDDFYDLG-GSEEE----LLNLIDLLERWDVEEAKNCCSEQVEIIFSALR 574 (769)
Q Consensus 500 ~Yf~aaa~~fEPe~s~~Rl~~aK~~~l~tviDD~fD~~-gt~eE----l~~ft~aierWD~~~~~~l~peymk~~f~aL~ 574 (769)
+|+++.-.. |. ..|-.+.-+-.+.-++||+-|.. ++.++ |+-+-+.++.- ..+- | -.++..+|.
T Consensus 7 sf~~a~~~l--p~--~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~~----~~g~-~--~~pv~~aL~ 75 (266)
T TIGR03464 7 NFPVASLLL--PA--RLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDAI----YSGE-P--AAPVFVALA 75 (266)
T ss_pred cHHHHHHhC--CH--HHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHH----hCCC-C--CChHHHHHH
Confidence 455555433 32 23343444556667799999974 45443 33333333220 0111 2 124556666
Q ss_pred hhHHHHHHHHhhhcccchhHHHHHHHH---hCCCCCChhhhhhhhccccch
Q 004193 575 STICEFGDKTLTWQGRNATSHIVETCL---RNKSVPTLDEYMENAYASFAL 622 (769)
Q Consensus 575 ~~~~ei~~~~~~~qgr~v~~yl~e~W~---~~g~vPt~eEYl~~a~vS~g~ 622 (769)
+++.+..-. +....-+.+.-. .....+|++|...-...+.|.
T Consensus 76 ~~~~~~~l~------~~~~~~li~~~~~Dl~~~~~~t~~eL~~Y~~~vAg~ 120 (266)
T TIGR03464 76 RTVQRHGLP------IEPFLDLLDAFRQDVVVTRYATWAELLDYCRYSANP 120 (266)
T ss_pred HHHHHcCCC------hHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhHHH
Confidence 666543110 001111222221 233457888887777766653
No 65
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.77 E-value=1.1e+02 Score=33.04 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=51.9
Q ss_pred chhhHHHHHHHHHHHhc-CCCcCCC-cchh-------hh--hccccCCCCCCCCCchHHHHHHHHcCCCCCCC-----CC
Q 004193 33 NNLCFQRTKERTEKMFD-KIELSVS-PYDT-------AW--VAMVPSLELPQAPCFPQCINWLLDNQVNDGSW-----GL 96 (769)
Q Consensus 33 ~~~~~~~~~~~i~~~~~-~g~~s~S-~YDT-------Aw--va~vp~~~~~~~p~Fp~~~~wil~~Q~~DGsW-----g~ 96 (769)
++..-++.|+.|..-.. +|.++|. -||. |- +++.-+++-.. --....||.-.|.+|||- |+
T Consensus 64 e~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~d---~d~v~~yi~gLq~edGsF~gD~wGE 140 (329)
T KOG0366|consen 64 ERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSINVLD---RDKVASYIKGLQQEDGSFSGDIWGE 140 (329)
T ss_pred chhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHccccccc---HHHHHHHHHhhcCcCCcccCCcccc
Confidence 34445666666665444 4544543 3552 11 34544432211 114589999999999995 54
Q ss_pred CCCCCccchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 004193 97 HNRPSWLVKDAVLCTLACVLALKRWGIGEEQMNKGIQFIMSN 138 (769)
Q Consensus 97 ~~~~~~~~~d~l~~Tla~vlAL~~w~~~~~~i~~g~~fl~~~ 138 (769)
-+. |.+-+.-|-++|..-. ..-.+++|+.|+.+-
T Consensus 141 vDT-------Rfs~~av~~L~lLg~l-d~~nve~aVd~~~~C 174 (329)
T KOG0366|consen 141 VDT-------RFSYCAVACLALLGKL-DTINVEKAVDFVLSC 174 (329)
T ss_pred cch-------hhhHHHHHHHHHHhhH-HHhhHHHHHHHHHhh
Confidence 432 3333333333333321 135688999999983
No 66
>PLN02279 ent-kaur-16-ene synthase
Probab=26.74 E-value=1.9e+02 Score=36.04 Aligned_cols=126 Identities=16% Similarity=0.109 Sum_probs=64.5
Q ss_pred HhhccccCCCccc---Ch-------hhHHHHHhc--cC---Ccc---hHHHHHHHHHHhC---CCCCCcCCcchHHHHHH
Q 004193 217 VMKYQRKNGSLFN---SP-------STTAAALTH--FH---NAG---CLHYLSSLLEKFG---NAVPTVHPLDIYINLTM 275 (769)
Q Consensus 217 v~~~~~~~GS~~~---SP-------saTAa~l~~--~~---d~~---~~~YL~~~~~~~~---g~VP~~yP~~~fe~l~~ 275 (769)
|++.|..|||-+. +| .+|+|.+.. .| +.. -+.|+++-..+.. ...|-.|-+-. --|
T Consensus 82 il~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~~~~~~gl~fi~~n~~~~~d~~~~~pvGfei~f---P~l 158 (784)
T PLN02279 82 LLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGEEQINKGLQFIELNSASVTDEKQHKPIGFDIIF---PGM 158 (784)
T ss_pred HHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCcccchhhHHHHHHHHHhhcccccCCCceEEEeh---HHH
Confidence 5778999999984 35 677777765 33 333 4455554333332 23343232222 236
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHhhhcCCcccCCCHH---HHHHHHHHHHHcCCcccchhhhccc-ccCCccccc
Q 004193 276 VESLESLGVDRHFRTEIKRVLDETYRFWLQGEEEIFLDLT---TCAMAFRLLRLNGYDVSSDPLTQFA-EDNQFCNSL 349 (769)
Q Consensus 276 VdtL~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~---~tAl~FrlLR~~Gy~VS~dvf~~F~-~~g~F~~~~ 349 (769)
++-++++|++-.|... .|+.++......-.....|.+ .+.+++ .|--.|.-+.=|.+.++. ++|.|.+++
T Consensus 159 l~~a~~~gl~~~~~~~---~l~~~~~~r~~~l~~~~~~~~~~~~~~l~~-s~Egl~~~~dw~~v~~~q~~~Gs~~~SP 232 (784)
T PLN02279 159 IEYAKDLDLNLPLGSE---VVDAMLHKRDLDLKSGGGSNTKGREAYLAY-VSEGIGKLQDWEMVMKYQRKNGSLFNSP 232 (784)
T ss_pred HHHHHHcCCCCCCChH---HHHHHHHhhhHHHhhcchhhcCCCcchHHH-HHhhccccccHHHHHhhcCCCCCcccCc
Confidence 7888999998666533 355554432110000001111 122222 222233344555566675 789998876
No 67
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=26.66 E-value=33 Score=33.94 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=28.7
Q ss_pred CCCC-CeeeeeeecCCCCCCHHHHHHHHHHH------HHHHHHHHHH
Q 004193 673 EGKL-NSVSLQMTYSDGNMTEVEAIEKIKVV------IKSTRRELLR 712 (769)
Q Consensus 673 rG~~-n~V~cyMke~gg~vS~EeA~~~i~~~------ie~~wkeln~ 712 (769)
||.. ..|.||+-++.+ .|.|+|.++++++ ....|+-+++
T Consensus 120 RtRSaTvV~cYLmq~~~-wtpe~A~~~vr~iRp~VlL~~~Qw~~l~e 165 (183)
T KOG1719|consen 120 RTRSATVVACYLMQHKN-WTPEAAVEHVRKIRPRVLLRPAQWDVLKE 165 (183)
T ss_pred CccchhhhhhhhhhhcC-CCHHHHHHHHHhcCcceeecHHHHHHHHH
Confidence 4555 779999887765 9999999999873 3455665554
No 68
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=24.92 E-value=62 Score=34.13 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=26.4
Q ss_pred chHHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhh
Q 004193 77 FPQCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRW 121 (769)
Q Consensus 77 Fp~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w 121 (769)
-...++||.++|..+|+|+.-. .|.-|+.||...
T Consensus 211 ~~~iv~WL~~qr~~~Ggf~STQ-----------dTvvaL~AL~~Y 244 (246)
T PF07678_consen 211 ASPIVRWLISQRNSGGGFGSTQ-----------DTVVALQALAEY 244 (246)
T ss_dssp HHHHHHHHHHCTTTTSSTSSHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccCcHH-----------HHHHHHHHHHHH
Confidence 3466999999999999999653 366777777654
No 69
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.62 E-value=1.2e+02 Score=33.75 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCccchhHHhhhHHHHHHHHhhcCCh--HHHHH
Q 004193 79 QCINWLLDNQVNDGSWGLHNRPSWLVKDAVLCTLACVLALKRWGIGE--EQMNK 130 (769)
Q Consensus 79 ~~~~wil~~Q~~DGsWg~~~~~~~~~~d~l~~Tla~vlAL~~w~~~~--~~i~~ 130 (769)
..+++|-.=|.|.|+.|+..+ ..--|.+|-|||.||..-+-.+ +.|+|
T Consensus 124 ~~i~fL~~c~~PeGGfgGGPG----Ql~HLA~TYAAVnaL~~~~~e~A~~~InR 173 (423)
T KOG0365|consen 124 NAIDFLFTCQGPEGGFGGGPG----QLPHLAPTYAAVNALCLCGSEDAYSSINR 173 (423)
T ss_pred HHHHHHHhcCCCCCCCCCCCc----cchhhhHHHHHHHHHHhcCcHHHHHHhhH
No 70
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=23.59 E-value=3.6e+02 Score=30.19 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCC------CcHHHHHHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHcCCc-ccchhhhcc
Q 004193 274 TMVESLESLGVDR------HFRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYD-VSSDPLTQF 339 (769)
Q Consensus 274 ~~VdtL~rlGi~~------hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FrlLR~~Gy~-VS~dvf~~F 339 (769)
..++.|.++|+.+ .|.+++ |+.+ +. ..+.+++.-+++.+|..|++ |+.|.+--+
T Consensus 109 e~l~~l~~~G~~rvslGvQS~~~~~---L~~l----~R-----~~s~~~~~~a~~~l~~~g~~~v~~dli~Gl 169 (375)
T PRK05628 109 EFFAALRAAGFTRVSLGMQSAAPHV---LAVL----DR-----THTPGRAVAAAREARAAGFEHVNLDLIYGT 169 (375)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHH---HHHc----CC-----CCCHHHHHHHHHHHHHcCCCcEEEEEeccC
Confidence 4567777788773 244444 3222 11 13677888899999999998 988865543
No 71
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=21.58 E-value=4.3e+02 Score=30.01 Aligned_cols=54 Identities=26% Similarity=0.355 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCCC------cHHHHHHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHcCCc-ccchhhhcc
Q 004193 274 TMVESLESLGVDRH------FRTEIKRVLDETYRFWLQGEEEIFLDLTTCAMAFRLLRLNGYD-VSSDPLTQF 339 (769)
Q Consensus 274 ~~VdtL~rlGi~~h------F~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FrlLR~~Gy~-VS~dvf~~F 339 (769)
..+..|.++|+.+- |.+++ |..+-+ ..+..+.--+++.+|..|++ |+.|.+--+
T Consensus 116 e~l~~l~~~GvnrislGvQS~~d~~---L~~l~R---------~~~~~~~~~ai~~l~~~G~~~v~~dlI~Gl 176 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGVQAFQDEL---LALCGR---------SHRVKDIFAAVDLIHQAGIENFSLDLISGL 176 (400)
T ss_pred HHHHHHHHCCCCEEEEEcccCCHHH---HHHhCC---------CCCHHHHHHHHHHHHHcCCCeEEEEeecCC
Confidence 45778888888843 55554 433322 14678888899999999998 888866544
No 72
>TIGR03486 cas_csx13_C CRISPR-associated protein, Cas_csx13 family, C-terminal region. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the C-terminal region or upstream gene; the N-terminal region is modelled by TIGR03485. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Probab=20.70 E-value=2.5e+02 Score=27.72 Aligned_cols=69 Identities=26% Similarity=0.374 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhcCcchhccCCChhHHHHHHHHHhhHHHHHHHHhhhcc---cc----------------------hhH
Q 004193 540 EEELLNLIDLLERWDVEEAKNCCSEQVEIIFSALRSTICEFGDKTLTWQG---RN----------------------ATS 594 (769)
Q Consensus 540 ~eEl~~ft~aierWD~~~~~~l~peymk~~f~aL~~~~~ei~~~~~~~qg---r~----------------------v~~ 594 (769)
.+.|..+++..+.||...- +. .++.|-.||-.++..|...+... | +. +..
T Consensus 32 r~gL~~M~~~~~~~~~e~e-q~---fiqa~HeAlr~~~~qI~~~tk~~-g~~~~~~~~e~e~erir~~l~r~kt~~~fr~ 106 (152)
T TIGR03486 32 RDELNKMIENSEIWDSEAE-QW---FVQSFHEALRRIYAKIASHTKRR-GSETLGDRWKRENERIYSSLARAKTSEQFRT 106 (152)
T ss_pred HHhHHHHHHHHHhcccHHH-HH---HHHHHHHHHHHHHHHHHHHhhhh-cccchhHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 4556777777777875432 22 45666677777777776555331 2 10 223
Q ss_pred HHHHHHHhCCCCCChhhhh
Q 004193 595 HIVETCLRNKSVPTLDEYM 613 (769)
Q Consensus 595 yl~e~W~~~g~vPt~eEYl 613 (769)
++.+-|...|..||++|.-
T Consensus 107 ~i~df~srAg~~~~Lqe~~ 125 (152)
T TIGR03486 107 FIADLWARAGRIPSLQEHW 125 (152)
T ss_pred HHHHHHHHccCCcchHHHH
Confidence 3444577778888887663
Done!