BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004197
(769 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 8/180 (4%)
Query: 191 AFRDKIAFAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPEVLESPQLEFLLISPKNSF 250
AF + I ++ K V + L I +S I + + P + +L +
Sbjct: 17 AFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH 76
Query: 251 VAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSI-DLLVNLRTLCLDQSILGDIDIAIIGK 309
++S K L L LT +L SLP+ + D L NL+ L L ++ L + + K
Sbjct: 77 ---DISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 310 LGNLEILSFWRSDIVHLPKAL-GQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGN 368
L NL L + + + LPK + +LT L LDL D L+ + V L +L++L + +
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKLTQLKQLSLND 190
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 18/173 (10%)
Query: 282 SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKAL-GQLTKLRLLD 340
I L N+R L L + L DI + + +L NL L + + LP + +LT L+ L
Sbjct: 58 GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 341 LTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIE 400
L + L+ + V L L LY+ + ++ + V + +N LT ++
Sbjct: 116 LVEN-QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTN-----------LTRLD 163
Query: 401 INIKNDIILPEGFFARKLERFKISIGNESFMASLPVAK-DWFRSRSH-FLINN 451
++ LPEG F + + ++S+ N++ + S+P D S +H +L+NN
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSL-NDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 260 FKRTKKLRVLDLTRMRLLSLPSSI-DLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSF 318
F R KLR+L L +L +LP+ I L NL TL + + L + I + +L NL L
Sbjct: 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116
Query: 319 WRSDIVHL-PKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVER 377
R+ + L P+ LTKL L L L+ + V L L+EL + N +++R
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLG-YNELQSLPKGVFDKLTSLKELRLYN----NQLKR 171
Query: 378 VNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKI 423
V + D+L L T++++ +PEG F LE+ K+
Sbjct: 172 V----PEGAFDKLT---ELKTLKLDNNQLKRVPEGAF-DSLEKLKM 209
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 259 FFKRTKKLRVLDLTRMRLLSLPSSI-DLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILS 317
FK K L L +T +L +LP + D LVNL L LD++ L + + L L LS
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 318 FWRSDIVHLPKAL-GQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVE 376
+++ LPK + +LT L+ L L + LK + L L+ L + N +++
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDN----NQLK 194
Query: 377 RVNSERSNASLDELMLL-----PWLTT 398
RV E + SL++L +L PW T
Sbjct: 195 RV-PEGAFDSLEKLKMLQLQENPWDCT 220
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 8/178 (4%)
Query: 191 AFRDKIAFAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPEVLESPQLEFLLISPKNSF 250
AF + I ++ K V + L I +S I + + P + +L +
Sbjct: 17 AFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH 76
Query: 251 VAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSI-DLLVNLRTLCLDQSILGDIDIAIIGK 309
++S K L L LT +L SLP+ + D L NL+ L L ++ L + + K
Sbjct: 77 ---DISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 310 LGNLEILSFWRSDIVHLPKAL-GQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYM 366
L NL L+ + + LPK + +LT L LDL+ L+ + V L +L++L +
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPEGVFDKLTQLKDLRL 188
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 22/162 (13%)
Query: 237 PQLEFLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL--------PSSIDLLV- 287
P+ +L++ N FVA +V E + K+R + +L +L P + V
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 288 --NLRTLCLDQSILGDIDIAIIGKLGNLEILSFW-RSDIVHLPKALGQLTKLRLLDLTDC 344
L+ D+ I G +A I ++SF + D V P G L LR T
Sbjct: 69 EDXLKQGAYDEVIKGAAGVAHIA-----SVVSFSNKYDEVVTPAIGGTLNALRAAAATPS 123
Query: 345 FHLKVIAPDVISSLI---RLEELYMGNCSIEWEVERVNSERS 383
V+ +S+LI +E +Y+ S W +E ++ ++
Sbjct: 124 VKRFVLTSSTVSALIPKPNVEGIYLDEKS--WNLESIDKAKT 163
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 22/162 (13%)
Query: 237 PQLEFLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL--------PSSIDLLV- 287
P+ +L++ N FVA +V E + K+R + +L +L P + V
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 288 --NLRTLCLDQSILGDIDIAIIGKLGNLEILSFW-RSDIVHLPKALGQLTKLRLLDLTDC 344
L+ D+ I G +A I ++SF + D V P G L LR T
Sbjct: 69 EDMLKQGAYDEVIKGAAGVAHIA-----SVVSFSNKYDEVVTPAIGGTLNALRAAAATPS 123
Query: 345 FHLKVIAPDVISSLI---RLEELYMGNCSIEWEVERVNSERS 383
V+ +S+LI +E +Y+ S W +E ++ ++
Sbjct: 124 VKRFVLTSSTVSALIPKPNVEGIYLDEKS--WNLESIDKAKT 163
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 260 FKRTKKLRVLDLTRMRLLSLPS-SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSF 318
F R KL+ L L +L S+P+ + D L NL+TL L + L + +LG L+ ++
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Query: 319 W-------RSDIVHLPK 328
+ R +I++L +
Sbjct: 187 FGNQFDCSRCEILYLSQ 203
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 260 FKRTKKLRVLDLTRMRLLSLPS-SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSF 318
F R KL+ L L +L S+P+ + D L NL+TL L + L + +LG L+ ++
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Query: 319 W 319
+
Sbjct: 187 F 187
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 286 LVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCF 345
LVNL++L L+ + + + A I L NL+ L S + L A+ L KL LDL C
Sbjct: 182 LVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240
Query: 346 HLKVIAPDVISSLIRLEELYMGNCS 370
L+ P + L+ L + +CS
Sbjct: 241 ALRNYPP-IFGGRAPLKRLILKDCS 264
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 278 SLPSSIDLLVNLRTLCLDQSILGDIDIAI--IGKLGNLEILSFWRSDIVHLPKALGQLTK 335
SLP+SI L NL++L + S L + AI + KL L++ + + + P G
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC--TALRNYPPIFGGRAP 254
Query: 336 LRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNC 369
L+ L L DC +L + D I L +LE+L + C
Sbjct: 255 LKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGC 287
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 21/175 (12%)
Query: 255 VSENFFKRTKKLRVLDLTRMRLLSLPS-SIDLLVNLRTLCLDQ-SILGDIDIAIIGKLGN 312
+ F KL+ L L + S+PS + + + +LR L L + L I L N
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 313 LEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372
L L+ ++ +P L L KL LDL+ HL I P L+ L++L+M I+
Sbjct: 187 LRYLNLAMCNLREIPN-LTPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWM----IQ 240
Query: 373 WEVERVNSERSNASLDELMLLPWLTTIEINIKND--IILPEGFFA--RKLERFKI 423
+++ + ER+ + D L L +EIN+ ++ +LP F LER +
Sbjct: 241 SQIQVI--ERN--AFDNLQSL-----VEINLAHNNLTLLPHDLFTPLHHLERIHL 286
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 258 NFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEIL 316
N FK + L +L L+R + ++ + + L NL TL L + L I L L+ L
Sbjct: 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141
Query: 317 SFWRSDIVHLPK-ALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSI 371
+ I +P A ++ LR LDL + L I+ L L L + C++
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 27/137 (19%)
Query: 451 NNRESLRELK-LKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDTNG---LPQLK 506
N+ + LR L+ L+L +R++++ A N + L + L+ N L + L +LK
Sbjct: 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL--NTLELFDNRLTTIPNGAFVYLSKLK 139
Query: 507 LLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKV 566
LW++NNP ++S+ A + P L RL + +L I
Sbjct: 140 ELWLRNNP-----IESIPSYAFNRIPSLR----------------RLDLGELKRLSYISE 178
Query: 567 ENCDELSNIFWLSTAKC 583
+ LSN+ +L+ A C
Sbjct: 179 GAFEGLSNLRYLNLAMC 195
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 612 LPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRL--IVWHCHKLKYIFLASMIRSFEQ 669
L NLE L +++ N+D + F+ LT L +V + +K I AS + +
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNF------FKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155
Query: 670 LQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPE 712
LD+ + ++ I ED ++ F R++++TLQD+ E
Sbjct: 156 FHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 612 LPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRL--IVWHCHKLKYIFLASMIRSFEQ 669
L NLE L +++ N+D + F+ LT L +V + +K I AS + +
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNF------FKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155
Query: 670 LQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPE 712
LD+ + ++ I ED ++ F R++++TLQD+ E
Sbjct: 156 FHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197
>pdb|3TNU|B Chain B, Heterocomplex Of Coil 2b Domains Of Human Intermediate
Filament Proteins, Keratin 5 (Krt5) And Keratin 14
(Krt14)
Length = 129
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 31 NANFRNLKAEIDKLKDESRSIQHRVSEAERKGEKIEEKVKKWLVSANNTIEQAAK 85
N + L+AEID +K + ++Q+ +++AE++GE + + L +++A +
Sbjct: 42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQ 96
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 264 KKLRVLDLTRMRLLSLPSSIDLL-VNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSD 322
+LRVL L+ R+ SL + L +L L + + L +I + L +L+ LSF D
Sbjct: 76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLD-LSFNDFD 134
Query: 323 IVHLPKALGQLTKLRLLDLTDC------------FHLKVIAPDVISSLIR---LEELYMG 367
++ + K G LTKL L L+ HL I D++S I+ E L +
Sbjct: 135 VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194
Query: 368 NCSIEWEVERVNSERS---NASLDELMLLPWLTTIEINIKN 405
N ++ V NS S N S++ L L L+ I++N +N
Sbjct: 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHL-QLSNIKLNDEN 234
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 329 ALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372
A LT L LDL+D L+V+ P L L L++ C ++
Sbjct: 74 AFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ 117
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 254 NVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCL-----DQSILGDIDIAIIG 308
++S F+ +L+ LDLT L LPS + L L+ L L DQ L I A
Sbjct: 265 DISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQ--LCQISAANFP 322
Query: 309 KLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVIS 356
L +L I R ++ L +G L KL L D H + A D S
Sbjct: 323 SLTHLYI----RGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,411,723
Number of Sequences: 62578
Number of extensions: 863061
Number of successful extensions: 2399
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2372
Number of HSP's gapped (non-prelim): 58
length of query: 769
length of database: 14,973,337
effective HSP length: 106
effective length of query: 663
effective length of database: 8,340,069
effective search space: 5529465747
effective search space used: 5529465747
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)