Query 004197
Match_columns 769
No_of_seqs 444 out of 4143
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 19:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.8E-40 3.8E-45 373.6 25.1 326 2-343 1-651 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.4E-36 7.4E-41 359.0 35.2 433 176-714 487-944 (1153)
3 PLN00113 leucine-rich repeat r 100.0 4.3E-33 9.3E-38 333.7 25.7 471 213-745 91-590 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.1E-32 2.4E-37 330.1 25.7 484 215-761 69-582 (968)
5 PLN03210 Resistant to P. syrin 99.9 1E-23 2.2E-28 252.3 30.7 516 18-627 349-908 (1153)
6 KOG4194 Membrane glycoprotein 99.9 3.4E-24 7.3E-29 216.8 6.7 391 266-759 54-448 (873)
7 KOG4658 Apoptotic ATPase [Sign 99.9 7.7E-24 1.7E-28 239.4 10.0 368 16-406 313-729 (889)
8 KOG4194 Membrane glycoprotein 99.9 2.1E-23 4.6E-28 211.0 9.7 374 214-684 51-431 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 1.4E-25 3E-30 216.9 -13.7 221 261-514 88-308 (565)
10 KOG0444 Cytoskeletal regulator 99.9 5E-24 1.1E-28 216.8 -3.5 137 261-411 29-167 (1255)
11 KOG0444 Cytoskeletal regulator 99.9 9.7E-24 2.1E-28 214.8 -3.7 139 262-414 5-146 (1255)
12 KOG0618 Serine/threonine phosp 99.8 1E-22 2.3E-27 217.3 -0.5 423 257-760 38-486 (1081)
13 KOG0472 Leucine-rich repeat pr 99.8 2.4E-24 5.3E-29 208.4 -14.3 236 198-469 73-312 (565)
14 KOG0618 Serine/threonine phosp 99.8 1.4E-21 2.9E-26 208.9 -5.2 385 260-713 64-489 (1081)
15 KOG0617 Ras suppressor protein 99.6 2.1E-17 4.6E-22 141.7 -5.5 140 260-414 52-193 (264)
16 PRK15387 E3 ubiquitin-protein 99.5 3.2E-13 7E-18 150.2 14.9 118 264-410 201-318 (788)
17 KOG4237 Extracellular matrix p 99.5 7.5E-15 1.6E-19 143.0 -0.8 144 197-367 50-196 (498)
18 PRK15370 E3 ubiquitin-protein 99.4 1.3E-12 2.7E-17 146.6 11.6 97 265-372 179-275 (754)
19 PRK15387 E3 ubiquitin-protein 99.4 6.2E-12 1.3E-16 140.1 16.5 186 195-423 203-389 (788)
20 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.5E-19 125.1 -4.0 154 212-373 30-187 (264)
21 PRK15370 E3 ubiquitin-protein 99.3 5.3E-12 1.1E-16 141.7 12.6 152 200-371 185-337 (754)
22 KOG4237 Extracellular matrix p 99.2 9.4E-13 2E-17 128.6 -1.9 107 265-372 68-177 (498)
23 PF14580 LRR_9: Leucine-rich r 99.0 1.4E-10 3.1E-15 105.6 4.4 130 261-402 16-148 (175)
24 KOG4341 F-box protein containi 99.0 2.5E-12 5.5E-17 126.8 -7.7 267 474-755 187-457 (483)
25 cd00116 LRR_RI Leucine-rich re 99.0 8.2E-11 1.8E-15 122.8 2.1 86 259-345 18-119 (319)
26 cd00116 LRR_RI Leucine-rich re 99.0 1.6E-10 3.5E-15 120.5 3.9 110 259-371 76-205 (319)
27 KOG1259 Nischarin, modulator o 99.0 9.6E-11 2.1E-15 110.4 -0.0 136 262-412 282-417 (490)
28 PF14580 LRR_9: Leucine-rich r 98.9 8.8E-10 1.9E-14 100.4 3.9 125 271-410 4-129 (175)
29 KOG4341 F-box protein containi 98.9 3.9E-11 8.4E-16 118.6 -6.3 289 455-763 139-439 (483)
30 KOG0532 Leucine-rich repeat (L 98.9 1.1E-10 2.4E-15 119.7 -4.2 176 217-414 77-254 (722)
31 KOG3207 Beta-tubulin folding c 98.8 2.3E-09 5E-14 106.9 1.4 207 137-371 68-283 (505)
32 KOG0532 Leucine-rich repeat (L 98.7 5.4E-10 1.2E-14 114.7 -4.6 143 249-412 87-229 (722)
33 COG4886 Leucine-rich repeat (L 98.6 2.4E-08 5.2E-13 107.2 5.1 130 261-405 113-243 (394)
34 PF13855 LRR_8: Leucine rich r 98.6 2.8E-08 6E-13 74.2 3.4 59 264-322 1-60 (61)
35 COG4886 Leucine-rich repeat (L 98.6 6E-08 1.3E-12 104.2 5.7 148 216-371 117-267 (394)
36 KOG1259 Nischarin, modulator o 98.6 9.3E-09 2E-13 97.3 -0.7 109 261-374 304-414 (490)
37 PF00931 NB-ARC: NB-ARC domain 98.5 2.8E-07 6.2E-12 94.3 7.9 69 122-192 6-76 (287)
38 KOG3207 Beta-tubulin folding c 98.5 4.4E-08 9.5E-13 97.9 1.0 137 261-410 118-262 (505)
39 PF13855 LRR_8: Leucine rich r 98.5 1.7E-07 3.6E-12 69.9 3.8 59 287-345 1-60 (61)
40 PLN03150 hypothetical protein; 98.4 5E-07 1.1E-11 101.7 8.3 104 289-405 420-526 (623)
41 PLN03150 hypothetical protein; 98.3 2.7E-06 5.9E-11 95.8 9.3 106 265-372 419-528 (623)
42 PRK15386 type III secretion pr 98.2 3.2E-06 6.9E-11 86.9 6.8 135 557-737 50-188 (426)
43 PRK15386 type III secretion pr 98.2 3.8E-06 8.3E-11 86.3 7.1 59 502-575 51-110 (426)
44 PF12799 LRR_4: Leucine Rich r 98.2 2.5E-06 5.4E-11 57.9 3.8 38 265-302 2-39 (44)
45 KOG2120 SCF ubiquitin ligase, 98.1 1.3E-07 2.8E-12 89.7 -4.0 84 288-372 186-273 (419)
46 PF12799 LRR_4: Leucine Rich r 98.1 3.6E-06 7.7E-11 57.2 3.9 40 287-327 1-40 (44)
47 KOG1947 Leucine rich repeat pr 98.0 5.9E-07 1.3E-11 99.8 -1.8 252 474-744 185-445 (482)
48 KOG1909 Ran GTPase-activating 98.0 7.8E-07 1.7E-11 86.7 -1.2 185 213-405 28-252 (382)
49 KOG2120 SCF ubiquitin ligase, 98.0 3.6E-07 7.8E-12 86.8 -4.3 139 454-598 185-326 (419)
50 KOG3665 ZYG-1-like serine/thre 97.9 3.5E-06 7.6E-11 94.4 2.3 128 214-345 121-261 (699)
51 KOG1859 Leucine-rich repeat pr 97.9 1.9E-07 4.1E-12 99.1 -7.3 127 264-406 164-291 (1096)
52 KOG0531 Protein phosphatase 1, 97.9 1.1E-06 2.4E-11 94.4 -1.9 102 265-371 73-174 (414)
53 KOG0531 Protein phosphatase 1, 97.9 1.9E-06 4.1E-11 92.6 -0.4 108 260-372 91-199 (414)
54 KOG4579 Leucine-rich repeat (L 97.8 2.2E-06 4.8E-11 71.9 -2.1 103 265-369 28-133 (177)
55 KOG3665 ZYG-1-like serine/thre 97.7 1.3E-05 2.9E-10 89.8 1.8 56 286-343 147-204 (699)
56 KOG2982 Uncharacterized conser 97.7 7.9E-06 1.7E-10 77.9 -0.0 37 262-298 69-108 (418)
57 KOG1859 Leucine-rich repeat pr 97.7 1.9E-06 4.2E-11 91.7 -5.0 105 260-370 183-290 (1096)
58 KOG1909 Ran GTPase-activating 97.7 9E-06 2E-10 79.5 -0.4 228 149-407 46-311 (382)
59 KOG4579 Leucine-rich repeat (L 97.6 1.6E-05 3.4E-10 66.9 -0.0 92 260-353 49-141 (177)
60 KOG1947 Leucine rich repeat pr 97.6 4.8E-06 1E-10 92.5 -4.4 217 530-761 186-412 (482)
61 KOG1644 U2-associated snRNP A' 97.3 0.00031 6.8E-09 63.6 4.9 79 265-344 43-123 (233)
62 KOG1644 U2-associated snRNP A' 97.2 0.00054 1.2E-08 62.2 5.6 104 288-404 43-150 (233)
63 KOG2982 Uncharacterized conser 97.2 0.00012 2.6E-09 70.1 0.8 105 265-370 46-157 (418)
64 cd01128 rho_factor Transcripti 97.0 0.00086 1.9E-08 65.6 5.4 53 133-186 16-68 (249)
65 KOG2123 Uncharacterized conser 96.9 5.9E-05 1.3E-09 71.4 -4.0 100 263-365 18-123 (388)
66 PRK09376 rho transcription ter 96.9 0.0014 2.9E-08 67.2 5.3 52 134-186 170-221 (416)
67 KOG2123 Uncharacterized conser 96.8 0.00011 2.3E-09 69.8 -3.4 79 288-370 20-99 (388)
68 COG5238 RNA1 Ran GTPase-activa 96.4 0.00074 1.6E-08 64.0 -0.6 83 262-345 28-131 (388)
69 PRK08118 topology modulation p 96.3 0.0028 6E-08 58.3 3.1 37 134-170 2-39 (167)
70 KOG2739 Leucine-rich acidic nu 96.2 0.002 4.2E-08 61.3 1.6 83 261-345 40-127 (260)
71 COG5238 RNA1 Ran GTPase-activa 96.2 0.0034 7.3E-08 59.7 2.7 90 282-372 25-133 (388)
72 KOG2739 Leucine-rich acidic nu 96.0 0.0026 5.7E-08 60.5 1.1 62 262-323 63-128 (260)
73 PF13207 AAA_17: AAA domain; P 95.9 0.0076 1.6E-07 52.2 3.6 23 135-157 1-23 (121)
74 KOG3864 Uncharacterized conser 95.9 0.00071 1.5E-08 61.5 -3.1 71 663-741 120-191 (221)
75 PF00560 LRR_1: Leucine Rich R 95.8 0.0047 1E-07 34.7 1.1 14 289-302 2-15 (22)
76 PF00560 LRR_1: Leucine Rich R 95.8 0.0044 9.6E-08 34.8 1.0 22 265-286 1-22 (22)
77 TIGR00767 rho transcription te 95.8 0.017 3.7E-07 59.6 5.9 52 134-186 169-220 (415)
78 PF13306 LRR_5: Leucine rich r 95.7 0.03 6.4E-07 49.1 6.5 106 257-368 5-112 (129)
79 KOG3864 Uncharacterized conser 95.5 0.0017 3.6E-08 59.1 -2.0 16 668-683 151-166 (221)
80 PRK06696 uridine kinase; Valid 95.3 0.029 6.3E-07 54.5 5.4 37 122-158 8-47 (223)
81 COG1618 Predicted nucleotide k 95.1 0.031 6.7E-07 49.1 4.3 27 135-161 7-33 (179)
82 PRK07261 topology modulation p 94.9 0.022 4.9E-07 52.6 3.2 35 135-169 2-37 (171)
83 PF13306 LRR_5: Leucine rich r 94.9 0.081 1.7E-06 46.3 6.6 117 235-362 10-129 (129)
84 PF00485 PRK: Phosphoribulokin 94.5 0.036 7.7E-07 52.6 3.6 25 135-159 1-25 (194)
85 PHA00729 NTP-binding motif con 94.3 0.072 1.6E-06 50.8 5.2 69 122-190 6-77 (226)
86 PRK12727 flagellar biosynthesi 94.3 0.49 1.1E-05 51.1 11.8 28 133-160 350-377 (559)
87 COG0466 Lon ATP-dependent Lon 94.3 0.47 1E-05 52.3 11.7 38 120-157 331-374 (782)
88 COG0572 Udk Uridine kinase [Nu 94.3 0.044 9.6E-07 51.5 3.6 27 132-158 7-33 (218)
89 COG1763 MobB Molybdopterin-gua 94.2 0.047 1E-06 49.1 3.6 30 133-162 2-31 (161)
90 PF03205 MobB: Molybdopterin g 94.2 0.055 1.2E-06 47.9 4.0 27 134-160 1-27 (140)
91 COG3640 CooC CO dehydrogenase 94.2 0.22 4.7E-06 47.0 7.9 33 135-167 2-34 (255)
92 PRK06547 hypothetical protein; 94.2 0.074 1.6E-06 49.0 4.9 35 123-157 5-39 (172)
93 KOG0473 Leucine-rich repeat pr 94.1 0.0029 6.2E-08 58.7 -4.5 85 260-345 38-122 (326)
94 PF13238 AAA_18: AAA domain; P 94.1 0.049 1.1E-06 47.6 3.4 22 136-157 1-22 (129)
95 PRK05480 uridine/cytidine kina 94.0 0.048 1E-06 52.5 3.5 26 132-157 5-30 (209)
96 cd00009 AAA The AAA+ (ATPases 93.9 0.1 2.2E-06 46.7 5.3 37 122-158 8-44 (151)
97 PTZ00301 uridine kinase; Provi 93.8 0.059 1.3E-06 51.4 3.6 26 133-158 3-28 (210)
98 PF13504 LRR_7: Leucine rich r 93.7 0.038 8.2E-07 28.7 1.2 15 288-302 2-16 (17)
99 KOG2004 Mitochondrial ATP-depe 93.7 0.46 9.9E-06 52.2 10.2 43 121-164 420-468 (906)
100 PRK08233 hypothetical protein; 93.7 0.057 1.2E-06 50.7 3.3 25 133-157 3-27 (182)
101 TIGR00235 udk uridine kinase. 93.6 0.058 1.3E-06 51.8 3.3 26 132-157 5-30 (207)
102 PF13504 LRR_7: Leucine rich r 93.6 0.047 1E-06 28.3 1.4 17 264-280 1-17 (17)
103 PRK07667 uridine kinase; Provi 93.5 0.13 2.9E-06 48.6 5.4 37 122-158 4-42 (193)
104 PF13191 AAA_16: AAA ATPase do 93.4 0.25 5.3E-06 46.4 7.3 40 122-161 10-52 (185)
105 PF13173 AAA_14: AAA domain 93.3 0.089 1.9E-06 46.0 3.7 26 133-158 2-27 (128)
106 TIGR03499 FlhF flagellar biosy 93.3 0.65 1.4E-05 46.9 10.4 28 133-160 194-221 (282)
107 PF00931 NB-ARC: NB-ARC domain 93.3 0.016 3.4E-07 59.2 -1.4 111 17-131 154-284 (287)
108 PRK10751 molybdopterin-guanine 93.2 0.098 2.1E-06 47.8 3.9 28 133-160 6-33 (173)
109 cd02019 NK Nucleoside/nucleoti 93.1 0.092 2E-06 39.9 3.1 23 135-157 1-23 (69)
110 PRK06762 hypothetical protein; 92.8 0.11 2.3E-06 48.0 3.6 24 134-157 3-26 (166)
111 TIGR00176 mobB molybdopterin-g 92.7 0.11 2.4E-06 46.9 3.5 26 135-160 1-26 (155)
112 cd02024 NRK1 Nicotinamide ribo 92.7 0.093 2E-06 48.9 3.0 23 135-157 1-23 (187)
113 PRK14722 flhF flagellar biosyn 92.7 2.6 5.7E-05 44.0 13.8 26 133-158 137-162 (374)
114 cd02025 PanK Pantothenate kina 92.6 0.093 2E-06 50.7 3.0 24 135-158 1-24 (220)
115 PF05729 NACHT: NACHT domain 92.5 0.14 3E-06 47.1 4.0 31 134-164 1-31 (166)
116 TIGR01360 aden_kin_iso1 adenyl 92.5 0.12 2.7E-06 48.6 3.7 26 132-157 2-27 (188)
117 TIGR01425 SRP54_euk signal rec 92.4 0.69 1.5E-05 49.0 9.3 28 133-160 100-127 (429)
118 cd02028 UMPK_like Uridine mono 92.3 0.12 2.5E-06 48.2 3.2 24 135-158 1-24 (179)
119 COG1428 Deoxynucleoside kinase 92.3 0.12 2.5E-06 48.1 3.0 26 133-158 4-29 (216)
120 PRK03839 putative kinase; Prov 92.3 0.13 2.9E-06 48.1 3.5 23 135-157 2-24 (180)
121 cd02023 UMPK Uridine monophosp 92.3 0.11 2.3E-06 49.6 2.9 23 135-157 1-23 (198)
122 PRK04040 adenylate kinase; Pro 92.2 0.14 3E-06 48.1 3.5 24 134-157 3-26 (188)
123 PF01583 APS_kinase: Adenylyls 92.1 0.2 4.4E-06 44.8 4.2 28 134-161 3-30 (156)
124 TIGR03015 pepcterm_ATPase puta 91.9 0.23 4.9E-06 50.1 5.0 30 129-158 39-68 (269)
125 PRK05703 flhF flagellar biosyn 91.9 1.9 4.1E-05 46.2 12.1 26 133-158 221-246 (424)
126 PF01637 Arch_ATPase: Archaeal 91.8 0.18 4E-06 49.4 4.2 37 122-158 9-45 (234)
127 PRK00625 shikimate kinase; Pro 91.7 0.16 3.5E-06 46.8 3.3 23 135-157 2-24 (173)
128 PRK05541 adenylylsulfate kinas 91.7 0.17 3.8E-06 47.0 3.6 26 133-158 7-32 (176)
129 PRK06995 flhF flagellar biosyn 91.6 2.3 5E-05 46.0 12.2 28 133-160 256-283 (484)
130 PRK11331 5-methylcytosine-spec 91.5 0.2 4.4E-06 52.9 4.1 46 122-169 185-230 (459)
131 KOG1532 GTPase XAB1, interacts 91.5 0.18 3.8E-06 48.5 3.3 30 133-162 19-48 (366)
132 PRK14493 putative bifunctional 91.4 0.2 4.4E-06 49.9 3.9 28 134-161 2-29 (274)
133 PRK06217 hypothetical protein; 91.4 0.16 3.6E-06 47.5 3.1 35 135-170 3-39 (183)
134 PRK12726 flagellar biosynthesi 91.4 1.4 3.1E-05 45.6 9.9 28 132-159 205-232 (407)
135 TIGR00450 mnmE_trmE_thdF tRNA 91.3 0.5 1.1E-05 51.0 7.0 115 29-156 102-226 (442)
136 PRK14974 cell division protein 91.3 2.7 5.8E-05 43.3 11.9 27 133-159 140-166 (336)
137 PF13671 AAA_33: AAA domain; P 91.3 0.21 4.5E-06 44.6 3.5 22 135-156 1-22 (143)
138 cd03116 MobB Molybdenum is an 91.2 0.26 5.7E-06 44.6 4.0 27 134-160 2-28 (159)
139 COG1124 DppF ABC-type dipeptid 91.1 0.18 3.9E-06 47.9 2.9 22 134-155 34-55 (252)
140 PRK00889 adenylylsulfate kinas 91.1 0.24 5.3E-06 46.0 3.9 26 133-158 4-29 (175)
141 PRK14721 flhF flagellar biosyn 91.0 2.7 5.8E-05 44.7 11.9 26 133-158 191-216 (420)
142 TIGR00150 HI0065_YjeE ATPase, 91.0 0.37 8.1E-06 41.9 4.6 35 122-158 13-47 (133)
143 PRK09270 nucleoside triphospha 90.9 0.38 8.2E-06 47.0 5.2 28 131-158 31-58 (229)
144 cd02020 CMPK Cytidine monophos 90.8 0.21 4.6E-06 44.8 3.1 23 135-157 1-23 (147)
145 TIGR01287 nifH nitrogenase iro 90.7 0.24 5.3E-06 50.0 3.8 28 134-161 1-28 (275)
146 PRK13236 nitrogenase reductase 90.7 0.28 6.1E-06 50.0 4.2 31 130-160 3-33 (296)
147 TIGR03420 DnaA_homol_Hda DnaA 90.6 0.5 1.1E-05 46.1 5.8 37 122-158 27-63 (226)
148 TIGR02322 phosphon_PhnN phosph 90.5 0.24 5.2E-06 46.3 3.3 24 134-157 2-25 (179)
149 PRK00131 aroK shikimate kinase 90.5 0.25 5.5E-06 45.8 3.5 25 133-157 4-28 (175)
150 PRK06893 DNA replication initi 90.5 0.53 1.2E-05 45.9 5.8 27 133-159 39-65 (229)
151 TIGR00763 lon ATP-dependent pr 90.4 1.5 3.3E-05 51.3 10.4 25 133-157 347-371 (775)
152 PRK13695 putative NTPase; Prov 90.3 0.44 9.5E-06 44.2 4.9 25 135-159 2-26 (174)
153 cd01133 F1-ATPase_beta F1 ATP 90.3 0.62 1.3E-05 46.1 6.0 53 134-188 70-122 (274)
154 TIGR02903 spore_lon_C ATP-depe 90.1 4.2 9.1E-05 46.1 13.3 38 124-161 166-203 (615)
155 PRK06526 transposase; Provisio 90.0 1.3 2.8E-05 43.8 8.1 46 133-188 98-143 (254)
156 PLN02348 phosphoribulokinase 90.0 0.45 9.6E-06 49.4 4.9 37 122-158 37-74 (395)
157 PRK03846 adenylylsulfate kinas 89.9 0.43 9.2E-06 45.4 4.5 27 132-158 23-49 (198)
158 PRK13975 thymidylate kinase; P 89.9 0.27 5.9E-06 46.7 3.2 25 134-158 3-27 (196)
159 TIGR00554 panK_bact pantothena 89.9 0.25 5.4E-06 49.6 3.0 25 132-156 61-85 (290)
160 PRK13230 nitrogenase reductase 89.9 0.34 7.3E-06 49.1 4.0 27 134-160 2-28 (279)
161 TIGR01359 UMP_CMP_kin_fam UMP- 89.8 0.26 5.7E-06 46.2 3.0 23 135-157 1-23 (183)
162 KOG0473 Leucine-rich repeat pr 89.8 0.012 2.5E-07 54.8 -5.8 92 278-372 32-124 (326)
163 PRK13947 shikimate kinase; Pro 89.7 0.3 6.5E-06 45.2 3.3 23 135-157 3-25 (171)
164 PRK10416 signal recognition pa 89.7 4 8.7E-05 41.8 11.6 28 132-159 113-140 (318)
165 PF11868 DUF3388: Protein of u 89.7 1.5 3.2E-05 38.5 7.0 34 122-155 43-78 (192)
166 cd02117 NifH_like This family 89.6 0.37 8E-06 46.4 3.9 26 134-159 1-26 (212)
167 PF00910 RNA_helicase: RNA hel 89.6 0.3 6.5E-06 41.0 2.8 24 136-159 1-24 (107)
168 PRK13949 shikimate kinase; Pro 89.6 0.31 6.7E-06 44.9 3.2 23 135-157 3-25 (169)
169 PRK00300 gmk guanylate kinase; 89.6 0.31 6.6E-06 46.7 3.3 25 133-157 5-29 (205)
170 cd00464 SK Shikimate kinase (S 89.6 0.33 7.1E-06 44.0 3.3 22 136-157 2-23 (154)
171 PRK14723 flhF flagellar biosyn 89.5 4.4 9.6E-05 46.3 12.6 26 133-158 185-210 (767)
172 PRK09183 transposase/IS protei 89.5 1.4 3E-05 43.8 8.0 25 134-158 103-127 (259)
173 PRK13232 nifH nitrogenase redu 89.5 0.37 7.9E-06 48.6 4.0 26 134-159 2-27 (273)
174 PF03266 NTPase_1: NTPase; In 89.5 0.3 6.5E-06 44.8 3.0 24 136-159 2-25 (168)
175 TIGR03263 guanyl_kin guanylate 89.5 0.29 6.2E-06 45.8 2.9 23 134-156 2-24 (180)
176 cd00820 PEPCK_HprK Phosphoenol 89.5 0.33 7.1E-06 40.3 2.9 21 134-154 16-36 (107)
177 PRK10078 ribose 1,5-bisphospho 89.4 0.3 6.5E-06 45.9 3.0 23 134-156 3-25 (186)
178 PRK12339 2-phosphoglycerate ki 89.4 0.81 1.7E-05 43.2 5.9 46 133-193 3-48 (197)
179 PRK14494 putative molybdopteri 89.3 0.42 9.1E-06 46.0 3.9 27 134-160 2-28 (229)
180 COG4608 AppF ABC-type oligopep 89.3 0.29 6.4E-06 47.6 2.8 23 133-155 39-61 (268)
181 PF13401 AAA_22: AAA domain; P 89.3 0.36 7.8E-06 42.2 3.3 26 133-158 4-29 (131)
182 COG4107 PhnK ABC-type phosphon 89.3 0.32 6.9E-06 43.4 2.7 24 134-157 33-56 (258)
183 PRK05057 aroK shikimate kinase 89.2 0.39 8.4E-06 44.4 3.6 25 133-157 4-28 (172)
184 PRK08084 DNA replication initi 89.2 0.72 1.6E-05 45.2 5.6 37 122-158 34-70 (235)
185 TIGR00073 hypB hydrogenase acc 89.2 0.45 9.8E-06 45.6 4.1 28 130-157 19-46 (207)
186 COG2019 AdkA Archaeal adenylat 89.1 0.43 9.2E-06 42.5 3.4 25 133-157 4-28 (189)
187 PRK00411 cdc6 cell division co 89.1 1.7 3.7E-05 46.6 9.0 68 122-191 40-111 (394)
188 PRK13946 shikimate kinase; Pro 89.1 0.37 8E-06 45.2 3.3 24 134-157 11-34 (184)
189 COG0125 Tmk Thymidylate kinase 89.0 0.92 2E-05 43.1 6.0 51 134-188 4-54 (208)
190 smart00369 LRR_TYP Leucine-ric 89.0 0.3 6.6E-06 28.6 1.8 19 311-329 2-20 (26)
191 smart00370 LRR Leucine-rich re 89.0 0.3 6.6E-06 28.6 1.8 19 311-329 2-20 (26)
192 cd01983 Fer4_NifH The Fer4_Nif 89.0 0.46 9.9E-06 38.8 3.6 25 135-159 1-25 (99)
193 PF05496 RuvB_N: Holliday junc 88.9 0.34 7.4E-06 45.9 2.9 28 131-158 48-75 (233)
194 PLN02796 D-glycerate 3-kinase 88.9 0.38 8.3E-06 49.1 3.5 26 133-158 100-125 (347)
195 PLN02200 adenylate kinase fami 88.9 0.35 7.7E-06 47.2 3.2 25 133-157 43-67 (234)
196 cd02040 NifH NifH gene encodes 88.9 0.42 9.2E-06 48.1 3.9 26 134-159 2-27 (270)
197 smart00370 LRR Leucine-rich re 88.9 0.35 7.6E-06 28.3 2.0 16 287-302 2-17 (26)
198 smart00369 LRR_TYP Leucine-ric 88.9 0.35 7.6E-06 28.3 2.0 16 287-302 2-17 (26)
199 PF00448 SRP54: SRP54-type pro 88.9 0.48 1E-05 44.8 3.9 27 134-160 2-28 (196)
200 PF00005 ABC_tran: ABC transpo 88.9 0.36 7.9E-06 42.6 3.0 24 134-157 12-35 (137)
201 PRK14490 putative bifunctional 88.9 0.39 8.4E-06 50.7 3.7 27 134-160 6-32 (369)
202 cd01672 TMPK Thymidine monopho 88.8 0.47 1E-05 45.1 4.0 24 135-158 2-25 (200)
203 cd00071 GMPK Guanosine monopho 88.8 0.34 7.5E-06 42.8 2.8 23 135-157 1-23 (137)
204 cd02021 GntK Gluconate kinase 88.7 0.36 7.7E-06 43.5 2.9 22 135-156 1-22 (150)
205 PRK12723 flagellar biosynthesi 88.7 4.8 0.0001 42.4 11.5 27 133-159 174-200 (388)
206 PRK14495 putative molybdopteri 88.7 0.46 1E-05 49.9 4.0 28 134-161 2-29 (452)
207 PTZ00202 tuzin; Provisional 88.6 12 0.00025 39.8 13.7 44 110-157 264-310 (550)
208 smart00367 LRR_CC Leucine-rich 88.6 0.22 4.7E-06 29.2 0.9 18 725-742 1-18 (26)
209 PF08477 Miro: Miro-like prote 88.6 0.43 9.3E-06 40.9 3.2 22 136-157 2-23 (119)
210 PRK06851 hypothetical protein; 88.6 7.6 0.00016 40.5 12.6 39 123-161 204-242 (367)
211 cd00227 CPT Chloramphenicol (C 88.6 0.45 9.8E-06 44.2 3.5 24 134-157 3-26 (175)
212 KOG2028 ATPase related to the 88.5 1 2.2E-05 45.3 6.0 32 130-161 159-190 (554)
213 PRK04182 cytidylate kinase; Pr 88.5 0.42 9.1E-06 44.6 3.4 23 135-157 2-24 (180)
214 PF00004 AAA: ATPase family as 88.5 0.44 9.6E-06 41.6 3.4 22 136-157 1-22 (132)
215 smart00382 AAA ATPases associa 88.5 0.38 8.2E-06 42.5 3.0 25 134-158 3-27 (148)
216 cd03114 ArgK-like The function 88.5 0.47 1E-05 42.5 3.5 26 135-160 1-26 (148)
217 PF01926 MMR_HSR1: 50S ribosom 88.4 0.36 7.8E-06 41.2 2.6 21 136-156 2-22 (116)
218 PRK10787 DNA-binding ATP-depen 88.4 1.7 3.6E-05 50.6 8.7 25 133-157 349-373 (784)
219 COG1484 DnaC DNA replication p 88.4 2.4 5.3E-05 41.9 8.7 59 122-192 96-154 (254)
220 PRK14530 adenylate kinase; Pro 88.4 0.46 9.9E-06 45.9 3.6 23 135-157 5-27 (215)
221 PRK10463 hydrogenase nickel in 88.2 0.74 1.6E-05 45.9 4.9 36 123-158 94-129 (290)
222 PRK08099 bifunctional DNA-bind 88.1 0.49 1.1E-05 50.1 3.9 34 124-157 210-243 (399)
223 TIGR02016 BchX chlorophyllide 87.9 0.55 1.2E-05 47.7 4.0 26 134-159 1-26 (296)
224 PRK13948 shikimate kinase; Pro 87.9 0.51 1.1E-05 43.9 3.4 25 133-157 10-34 (182)
225 TIGR02173 cyt_kin_arch cytidyl 87.9 0.49 1.1E-05 43.7 3.4 22 135-156 2-23 (171)
226 PRK13235 nifH nitrogenase redu 87.9 0.54 1.2E-05 47.4 3.9 25 134-158 2-26 (274)
227 PRK09825 idnK D-gluconate kina 87.9 0.5 1.1E-05 43.8 3.3 25 134-158 4-28 (176)
228 cd02027 APSK Adenosine 5'-phos 87.8 0.49 1.1E-05 42.5 3.2 24 135-158 1-24 (149)
229 TIGR01281 DPOR_bchL light-inde 87.8 0.54 1.2E-05 47.3 3.9 24 135-158 2-25 (268)
230 cd02034 CooC The accessory pro 87.6 0.68 1.5E-05 39.4 3.8 24 136-159 2-25 (116)
231 cd02029 PRK_like Phosphoribulo 87.5 0.55 1.2E-05 46.0 3.4 24 135-158 1-24 (277)
232 COG1102 Cmk Cytidylate kinase 87.3 0.57 1.2E-05 41.5 3.1 24 135-158 2-25 (179)
233 COG0237 CoaE Dephospho-CoA kin 87.3 0.53 1.2E-05 44.4 3.2 23 133-155 2-24 (201)
234 PRK07933 thymidylate kinase; V 87.3 0.67 1.5E-05 44.5 4.0 27 135-161 2-28 (213)
235 PRK09435 membrane ATPase/prote 87.3 1.1 2.5E-05 45.9 5.8 39 122-160 43-83 (332)
236 PRK13233 nifH nitrogenase redu 87.3 0.45 9.7E-06 48.1 2.9 25 134-158 3-27 (275)
237 PRK13768 GTPase; Provisional 87.2 0.65 1.4E-05 46.0 3.9 25 134-158 3-27 (253)
238 PF02562 PhoH: PhoH-like prote 87.2 1.3 2.8E-05 41.8 5.7 46 122-169 10-55 (205)
239 PRK03731 aroL shikimate kinase 87.1 0.61 1.3E-05 43.1 3.5 24 134-157 3-26 (171)
240 PLN02318 phosphoribulokinase/u 87.1 0.85 1.8E-05 49.9 4.9 27 131-157 63-89 (656)
241 smart00763 AAA_PrkA PrkA AAA d 87.0 1.1 2.4E-05 46.1 5.5 38 122-159 61-104 (361)
242 COG0563 Adk Adenylate kinase a 87.0 0.58 1.3E-05 43.3 3.2 22 135-156 2-23 (178)
243 PF13521 AAA_28: AAA domain; P 87.0 0.52 1.1E-05 43.2 2.9 21 136-156 2-22 (163)
244 PRK11889 flhF flagellar biosyn 86.9 0.71 1.5E-05 47.9 4.0 26 133-158 241-266 (436)
245 COG1136 SalX ABC-type antimicr 86.9 0.57 1.2E-05 44.7 3.1 22 134-155 32-53 (226)
246 PRK08181 transposase; Validate 86.8 13 0.00029 37.0 12.8 45 134-188 107-151 (269)
247 PRK05439 pantothenate kinase; 86.8 0.57 1.2E-05 47.4 3.3 26 132-157 85-110 (311)
248 TIGR01313 therm_gnt_kin carboh 86.8 0.48 1E-05 43.4 2.6 22 136-157 1-22 (163)
249 cd02022 DPCK Dephospho-coenzym 86.7 0.53 1.2E-05 43.9 2.9 21 135-155 1-21 (179)
250 PF03029 ATP_bind_1: Conserved 86.7 0.52 1.1E-05 46.1 2.8 23 138-160 1-23 (238)
251 PLN03046 D-glycerate 3-kinase; 86.7 0.59 1.3E-05 48.8 3.3 26 132-157 211-236 (460)
252 COG1100 GTPase SAR1 and relate 86.7 0.45 9.8E-06 46.1 2.5 24 134-157 6-29 (219)
253 cd02026 PRK Phosphoribulokinas 86.6 0.53 1.1E-05 47.1 2.9 23 135-157 1-23 (273)
254 PRK00698 tmk thymidylate kinas 86.6 0.74 1.6E-05 44.0 3.9 27 134-160 4-30 (205)
255 cd02032 Bchl_like This family 86.5 0.73 1.6E-05 46.3 3.9 24 135-158 2-25 (267)
256 cd03225 ABC_cobalt_CbiO_domain 86.5 0.59 1.3E-05 45.0 3.1 23 134-156 28-50 (211)
257 cd03229 ABC_Class3 This class 86.4 0.62 1.3E-05 43.4 3.2 23 134-156 27-49 (178)
258 COG3638 ABC-type phosphate/pho 86.3 0.64 1.4E-05 44.1 3.0 23 133-155 30-52 (258)
259 PRK14489 putative bifunctional 86.3 0.78 1.7E-05 48.3 4.1 29 132-160 204-232 (366)
260 TIGR00064 ftsY signal recognit 86.2 0.89 1.9E-05 45.5 4.3 27 132-158 71-97 (272)
261 PRK15453 phosphoribulokinase; 86.2 0.76 1.6E-05 45.4 3.7 26 132-157 4-29 (290)
262 PRK05291 trmE tRNA modificatio 86.2 3.7 8.1E-05 44.6 9.4 117 30-156 111-238 (449)
263 PRK13231 nitrogenase reductase 86.2 0.58 1.2E-05 46.9 3.0 26 134-159 3-28 (264)
264 cd03222 ABC_RNaseL_inhibitor T 86.1 0.62 1.3E-05 43.2 2.9 24 133-156 25-48 (177)
265 TIGR00635 ruvB Holliday juncti 86.1 1.2 2.6E-05 45.8 5.3 26 133-158 30-55 (305)
266 PRK08939 primosomal protein Dn 86.1 1.6 3.5E-05 44.4 6.2 49 133-191 156-204 (306)
267 KOG3308 Uncharacterized protei 86.0 0.62 1.4E-05 42.8 2.7 24 133-156 4-27 (225)
268 COG1123 ATPase components of v 86.0 0.58 1.3E-05 50.6 3.0 22 134-155 318-339 (539)
269 cd04139 RalA_RalB RalA/RalB su 86.0 0.63 1.4E-05 42.5 3.0 22 135-156 2-23 (164)
270 cd03255 ABC_MJ0796_Lo1CDE_FtsE 85.9 0.65 1.4E-05 45.0 3.1 23 134-156 31-53 (218)
271 PF01695 IstB_IS21: IstB-like 85.9 1.4 3.1E-05 40.9 5.2 45 133-187 47-91 (178)
272 cd03238 ABC_UvrA The excision 85.8 0.68 1.5E-05 42.8 3.0 21 134-154 22-42 (176)
273 TIGR00960 3a0501s02 Type II (G 85.8 0.66 1.4E-05 44.9 3.1 23 134-156 30-52 (216)
274 TIGR01166 cbiO cobalt transpor 85.8 0.68 1.5E-05 43.7 3.1 23 134-156 19-41 (190)
275 TIGR00041 DTMP_kinase thymidyl 85.8 0.9 1.9E-05 43.1 4.0 27 134-160 4-30 (195)
276 cd03115 SRP The signal recogni 85.6 0.98 2.1E-05 41.8 4.0 27 134-160 1-27 (173)
277 PRK00771 signal recognition pa 85.5 5.1 0.00011 43.0 9.8 28 132-159 94-121 (437)
278 PRK06761 hypothetical protein; 85.4 0.78 1.7E-05 45.7 3.4 25 134-158 4-28 (282)
279 PF02374 ArsA_ATPase: Anion-tr 85.3 0.98 2.1E-05 46.1 4.1 25 134-158 2-26 (305)
280 PRK13342 recombination factor 85.2 1.1 2.3E-05 48.3 4.7 34 124-157 27-60 (413)
281 cd03260 ABC_PstB_phosphate_tra 85.2 0.74 1.6E-05 44.9 3.2 24 134-157 27-50 (227)
282 cd03293 ABC_NrtD_SsuB_transpor 85.2 0.74 1.6E-05 44.7 3.1 23 134-156 31-53 (220)
283 PF00142 Fer4_NifH: 4Fe-4S iro 85.2 0.76 1.6E-05 44.7 3.0 28 134-161 1-28 (273)
284 cd03259 ABC_Carb_Solutes_like 85.2 0.75 1.6E-05 44.3 3.1 23 134-156 27-49 (213)
285 cd03261 ABC_Org_Solvent_Resist 85.1 0.74 1.6E-05 45.2 3.1 23 134-156 27-49 (235)
286 TIGR00017 cmk cytidylate kinas 85.1 0.88 1.9E-05 43.8 3.5 24 134-157 3-26 (217)
287 PRK13185 chlL protochlorophyll 85.1 0.95 2.1E-05 45.5 4.0 25 134-158 3-27 (270)
288 TIGR02673 FtsE cell division A 85.0 0.76 1.7E-05 44.3 3.1 23 134-156 29-51 (214)
289 PRK10584 putative ABC transpor 85.0 0.77 1.7E-05 44.8 3.2 23 134-156 37-59 (228)
290 COG0529 CysC Adenylylsulfate k 85.0 1.2 2.5E-05 40.3 3.8 30 131-160 21-50 (197)
291 cd03269 ABC_putative_ATPase Th 84.9 0.79 1.7E-05 44.1 3.2 23 134-156 27-49 (210)
292 PF03308 ArgK: ArgK protein; 84.9 2 4.4E-05 41.7 5.8 40 122-161 16-57 (266)
293 cd01862 Rab7 Rab7 subfamily. 84.9 0.69 1.5E-05 42.6 2.7 22 135-156 2-23 (172)
294 COG1936 Predicted nucleotide k 84.9 0.79 1.7E-05 41.2 2.8 20 135-154 2-21 (180)
295 PRK09087 hypothetical protein; 84.8 0.86 1.9E-05 44.2 3.4 24 133-156 44-67 (226)
296 cd01673 dNK Deoxyribonucleosid 84.8 0.77 1.7E-05 43.4 3.0 23 135-157 1-23 (193)
297 cd04155 Arl3 Arl3 subfamily. 84.8 0.68 1.5E-05 42.8 2.6 24 133-156 14-37 (173)
298 PRK14527 adenylate kinase; Pro 84.8 0.92 2E-05 42.8 3.5 25 133-157 6-30 (191)
299 PRK13541 cytochrome c biogenes 84.7 0.79 1.7E-05 43.5 3.0 23 134-156 27-49 (195)
300 PF10662 PduV-EutP: Ethanolami 84.7 0.88 1.9E-05 40.0 3.0 58 134-191 2-62 (143)
301 cd03263 ABC_subfamily_A The AB 84.7 0.8 1.7E-05 44.4 3.1 23 134-156 29-51 (220)
302 TIGR03864 PQQ_ABC_ATP ABC tran 84.6 0.81 1.8E-05 44.9 3.2 23 134-156 28-50 (236)
303 PHA02575 1 deoxynucleoside mon 84.6 0.81 1.8E-05 43.4 2.9 38 135-187 2-39 (227)
304 COG1126 GlnQ ABC-type polar am 84.6 0.9 2E-05 42.5 3.1 22 134-155 29-50 (240)
305 TIGR00455 apsK adenylylsulfate 84.6 1.1 2.4E-05 42.0 3.9 26 133-158 18-43 (184)
306 COG1116 TauB ABC-type nitrate/ 84.6 0.83 1.8E-05 43.9 3.0 22 134-155 30-51 (248)
307 PRK08727 hypothetical protein; 84.6 1 2.2E-05 44.1 3.8 28 133-160 41-68 (233)
308 cd03235 ABC_Metallic_Cations A 84.6 0.79 1.7E-05 44.2 3.0 23 134-156 26-48 (213)
309 COG0444 DppD ABC-type dipeptid 84.5 0.84 1.8E-05 45.6 3.1 23 134-156 32-54 (316)
310 PF02367 UPF0079: Uncharacteri 84.5 1.9 4.1E-05 36.9 4.8 35 122-158 6-40 (123)
311 cd03297 ABC_ModC_molybdenum_tr 84.4 0.84 1.8E-05 44.0 3.1 25 131-156 22-46 (214)
312 TIGR03574 selen_PSTK L-seryl-t 84.3 0.84 1.8E-05 45.2 3.1 23 136-158 2-24 (249)
313 PF13604 AAA_30: AAA domain; P 84.2 2.2 4.8E-05 40.4 5.8 39 122-160 7-45 (196)
314 cd03265 ABC_DrrA DrrA is the A 84.2 0.89 1.9E-05 44.1 3.2 23 134-156 27-49 (220)
315 PF03193 DUF258: Protein of un 84.1 1.6 3.5E-05 39.3 4.5 32 122-156 27-58 (161)
316 PRK01184 hypothetical protein; 84.0 0.96 2.1E-05 42.4 3.3 21 134-155 2-22 (184)
317 COG1120 FepC ABC-type cobalami 84.0 0.92 2E-05 44.3 3.1 25 133-157 28-52 (258)
318 COG0703 AroK Shikimate kinase 84.0 0.98 2.1E-05 41.0 3.1 23 135-157 4-26 (172)
319 TIGR01184 ntrCD nitrate transp 84.0 0.9 2E-05 44.4 3.2 23 134-156 12-34 (230)
320 cd03226 ABC_cobalt_CbiO_domain 84.0 0.9 1.9E-05 43.5 3.1 23 134-156 27-49 (205)
321 cd01876 YihA_EngB The YihA (En 84.0 0.78 1.7E-05 41.9 2.6 20 136-155 2-21 (170)
322 PRK08903 DnaA regulatory inact 84.0 1.2 2.6E-05 43.5 4.0 26 133-158 42-67 (227)
323 COG0410 LivF ABC-type branched 84.0 0.96 2.1E-05 42.8 3.1 25 133-157 29-53 (237)
324 COG1419 FlhF Flagellar GTP-bin 84.0 13 0.00028 38.9 11.3 25 132-156 202-227 (407)
325 PRK00454 engB GTP-binding prot 83.9 0.98 2.1E-05 42.8 3.3 31 126-156 17-47 (196)
326 COG1703 ArgK Putative periplas 83.9 1.8 4E-05 42.7 5.0 41 122-162 38-80 (323)
327 TIGR02315 ABC_phnC phosphonate 83.9 0.89 1.9E-05 44.9 3.1 23 134-156 29-51 (243)
328 cd03256 ABC_PhnC_transporter A 83.9 0.89 1.9E-05 44.8 3.1 23 134-156 28-50 (241)
329 TIGR00231 small_GTP small GTP- 83.9 0.85 1.8E-05 41.0 2.8 22 135-156 3-24 (161)
330 PF07728 AAA_5: AAA domain (dy 83.9 0.98 2.1E-05 40.0 3.1 22 136-157 2-23 (139)
331 PLN02165 adenylate isopentenyl 83.9 0.98 2.1E-05 46.0 3.3 29 129-157 39-67 (334)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 83.8 0.98 2.1E-05 40.3 3.0 23 134-156 27-49 (144)
333 cd03292 ABC_FtsE_transporter F 83.8 0.94 2E-05 43.7 3.1 23 134-156 28-50 (214)
334 PRK07429 phosphoribulokinase; 83.8 0.93 2E-05 46.6 3.2 26 132-157 7-32 (327)
335 PRK13538 cytochrome c biogenes 83.7 0.94 2E-05 43.3 3.1 23 134-156 28-50 (204)
336 cd03278 ABC_SMC_barmotin Barmo 83.7 0.91 2E-05 43.0 2.9 21 135-155 24-44 (197)
337 cd03264 ABC_drug_resistance_li 83.6 0.87 1.9E-05 43.8 2.8 22 135-156 27-48 (211)
338 TIGR02211 LolD_lipo_ex lipopro 83.6 0.96 2.1E-05 43.9 3.1 24 133-156 31-54 (221)
339 COG2256 MGS1 ATPase related to 83.6 1.3 2.7E-05 45.6 3.9 41 124-166 39-79 (436)
340 cd03296 ABC_CysA_sulfate_impor 83.6 0.94 2E-05 44.6 3.1 23 134-156 29-51 (239)
341 PRK13234 nifH nitrogenase redu 83.6 1.3 2.7E-05 45.2 4.1 27 132-158 3-29 (295)
342 PF13555 AAA_29: P-loop contai 83.6 1.4 3.1E-05 32.3 3.1 21 135-155 25-45 (62)
343 PRK11629 lolD lipoprotein tran 83.5 0.96 2.1E-05 44.3 3.1 23 134-156 36-58 (233)
344 PRK11248 tauB taurine transpor 83.5 0.96 2.1E-05 45.0 3.1 23 134-156 28-50 (255)
345 smart00175 RAB Rab subfamily o 83.4 0.9 1.9E-05 41.4 2.8 21 136-156 3-23 (164)
346 PRK15177 Vi polysaccharide exp 83.3 1 2.2E-05 43.4 3.1 23 134-156 14-36 (213)
347 TIGR02928 orc1/cdc6 family rep 83.3 2 4.2E-05 45.5 5.6 37 122-158 25-65 (365)
348 PRK08154 anaerobic benzoate ca 83.3 1.8 4E-05 44.3 5.2 26 132-157 132-157 (309)
349 cd00876 Ras Ras family. The R 83.3 0.97 2.1E-05 41.0 2.9 21 136-156 2-22 (160)
350 cd00154 Rab Rab family. Rab G 83.3 0.99 2.1E-05 40.7 3.0 21 136-156 3-23 (159)
351 TIGR03608 L_ocin_972_ABC putat 83.3 1 2.2E-05 43.1 3.2 23 134-156 25-47 (206)
352 COG0003 ArsA Predicted ATPase 83.3 0.85 1.8E-05 46.5 2.7 23 133-155 2-24 (322)
353 cd03257 ABC_NikE_OppD_transpor 83.3 0.97 2.1E-05 44.1 3.1 23 134-156 32-54 (228)
354 PRK13540 cytochrome c biogenes 83.3 1 2.2E-05 42.9 3.2 24 133-156 27-50 (200)
355 cd03237 ABC_RNaseL_inhibitor_d 83.3 0.97 2.1E-05 44.6 3.0 23 134-156 26-48 (246)
356 TIGR02528 EutP ethanolamine ut 83.2 0.96 2.1E-05 40.1 2.8 22 135-156 2-23 (142)
357 TIGR00101 ureG urease accessor 83.2 1.2 2.6E-05 42.3 3.5 24 135-158 3-26 (199)
358 PRK13341 recombination factor 83.1 1.6 3.5E-05 50.1 5.0 35 123-157 42-76 (725)
359 cd01898 Obg Obg subfamily. Th 83.1 0.91 2E-05 41.7 2.7 20 136-155 3-22 (170)
360 TIGR00750 lao LAO/AO transport 83.1 1.3 2.8E-05 45.2 4.0 30 131-160 32-61 (300)
361 PF04665 Pox_A32: Poxvirus A32 83.1 1.8 3.8E-05 42.0 4.6 34 135-170 15-48 (241)
362 cd03258 ABC_MetN_methionine_tr 83.1 1 2.2E-05 44.1 3.1 24 133-156 31-54 (233)
363 cd04171 SelB SelB subfamily. 83.0 0.99 2.1E-05 41.1 2.9 21 135-155 2-22 (164)
364 CHL00072 chlL photochlorophyll 83.0 1.2 2.7E-05 45.1 3.7 24 136-159 3-26 (290)
365 PF12061 DUF3542: Protein of u 83.0 3.3 7.2E-05 40.8 6.3 55 34-89 316-371 (402)
366 PRK08356 hypothetical protein; 82.9 1 2.3E-05 42.6 3.0 20 134-153 6-25 (195)
367 cd03301 ABC_MalK_N The N-termi 82.9 1.1 2.3E-05 43.3 3.2 23 134-156 27-49 (213)
368 PF06309 Torsin: Torsin; Inte 82.9 3.3 7.2E-05 35.4 5.6 27 132-158 52-78 (127)
369 PRK10536 hypothetical protein; 82.9 3.2 6.9E-05 40.6 6.2 45 122-168 65-109 (262)
370 PRK10619 histidine/lysine/argi 82.9 1 2.2E-05 44.9 3.1 24 133-156 31-54 (257)
371 cd02042 ParA ParA and ParB of 82.9 1.4 3E-05 36.6 3.4 25 135-159 1-26 (104)
372 cd02030 NDUO42 NADH:Ubiquinone 82.9 1.1 2.3E-05 43.4 3.1 23 135-157 1-23 (219)
373 cd04163 Era Era subfamily. Er 82.9 1 2.3E-05 41.0 3.0 23 133-155 3-25 (168)
374 cd04113 Rab4 Rab4 subfamily. 82.9 1.1 2.3E-05 40.9 2.9 21 136-156 3-23 (161)
375 PRK05642 DNA replication initi 82.8 1.3 2.9E-05 43.3 3.8 25 134-158 46-70 (234)
376 smart00173 RAS Ras subfamily o 82.8 1.1 2.4E-05 40.9 3.0 22 135-156 2-23 (164)
377 PRK10646 ADP-binding protein; 82.8 2.2 4.8E-05 38.1 4.7 36 122-159 19-54 (153)
378 TIGR00959 ffh signal recogniti 82.8 5.2 0.00011 42.8 8.4 26 133-158 99-124 (428)
379 PF07726 AAA_3: ATPase family 82.7 0.85 1.8E-05 39.0 2.0 22 136-157 2-23 (131)
380 TIGR02770 nickel_nikD nickel i 82.7 1.1 2.3E-05 43.9 3.0 23 134-156 13-35 (230)
381 cd03216 ABC_Carb_Monos_I This 82.7 1.2 2.5E-05 40.8 3.1 23 134-156 27-49 (163)
382 PRK14245 phosphate ABC transpo 82.7 1.1 2.3E-05 44.5 3.1 22 134-155 30-51 (250)
383 TIGR00972 3a0107s01c2 phosphat 82.7 1 2.3E-05 44.5 3.0 24 133-156 27-50 (247)
384 cd01428 ADK Adenylate kinase ( 82.7 1.1 2.5E-05 42.3 3.2 21 136-156 2-22 (194)
385 PRK11022 dppD dipeptide transp 82.6 0.99 2.2E-05 46.7 2.9 23 134-156 34-56 (326)
386 PLN02924 thymidylate kinase 82.6 1.5 3.3E-05 42.3 4.0 27 134-160 17-43 (220)
387 PRK10867 signal recognition pa 82.6 10 0.00023 40.6 10.5 28 133-160 100-127 (433)
388 PTZ00088 adenylate kinase 1; P 82.6 1.2 2.6E-05 43.2 3.3 22 136-157 9-30 (229)
389 cd03224 ABC_TM1139_LivF_branch 82.6 1.1 2.3E-05 43.6 3.0 23 134-156 27-49 (222)
390 cd03214 ABC_Iron-Siderophores_ 82.6 1.2 2.5E-05 41.6 3.1 23 134-156 26-48 (180)
391 cd03246 ABCC_Protease_Secretio 82.5 1.2 2.6E-05 41.3 3.2 23 134-156 29-51 (173)
392 PRK13539 cytochrome c biogenes 82.5 1.1 2.5E-05 42.8 3.2 24 133-156 28-51 (207)
393 PRK11124 artP arginine transpo 82.5 1.1 2.4E-05 44.2 3.1 23 134-156 29-51 (242)
394 cd04119 RJL RJL (RabJ-Like) su 82.5 1.1 2.4E-05 41.0 3.0 21 136-156 3-23 (168)
395 cd03240 ABC_Rad50 The catalyti 82.5 1.1 2.5E-05 42.7 3.1 22 134-155 23-44 (204)
396 cd03295 ABC_OpuCA_Osmoprotecti 82.4 1.1 2.4E-05 44.1 3.2 23 134-156 28-50 (242)
397 cd01864 Rab19 Rab19 subfamily. 82.4 1.1 2.4E-05 41.0 2.9 22 134-155 4-25 (165)
398 cd04159 Arl10_like Arl10-like 82.4 1 2.2E-05 40.6 2.7 21 136-156 2-22 (159)
399 cd03247 ABCC_cytochrome_bd The 82.4 1.2 2.6E-05 41.5 3.1 23 134-156 29-51 (178)
400 PRK06620 hypothetical protein; 82.4 1.2 2.6E-05 42.8 3.2 23 134-156 45-67 (214)
401 COG2255 RuvB Holliday junction 82.3 1.2 2.5E-05 43.6 3.0 29 130-158 49-77 (332)
402 TIGR02324 CP_lyasePhnL phospho 82.3 1.1 2.5E-05 43.5 3.1 23 134-156 35-57 (224)
403 cd03266 ABC_NatA_sodium_export 82.3 1.2 2.5E-05 43.2 3.1 23 134-156 32-54 (218)
404 PRK10247 putative ABC transpor 82.2 1.2 2.5E-05 43.4 3.2 23 134-156 34-56 (225)
405 PRK00080 ruvB Holliday junctio 82.2 2 4.4E-05 44.6 5.1 26 133-158 51-76 (328)
406 cd03218 ABC_YhbG The ABC trans 82.2 1.2 2.5E-05 43.7 3.1 23 134-156 27-49 (232)
407 PRK15093 antimicrobial peptide 82.2 1.1 2.4E-05 46.4 3.2 23 134-156 34-56 (330)
408 PRK13973 thymidylate kinase; P 82.2 1.6 3.4E-05 42.1 4.0 28 134-161 4-31 (213)
409 cd03274 ABC_SMC4_euk Eukaryoti 82.2 1.1 2.4E-05 43.0 2.9 22 133-154 25-46 (212)
410 cd03231 ABC_CcmA_heme_exporter 82.1 1.2 2.6E-05 42.4 3.1 23 134-156 27-49 (201)
411 cd03223 ABCD_peroxisomal_ALDP 82.1 1.2 2.7E-05 40.8 3.1 23 134-156 28-50 (166)
412 cd03219 ABC_Mj1267_LivG_branch 82.1 1.1 2.3E-05 44.1 2.9 23 134-156 27-49 (236)
413 cd00879 Sar1 Sar1 subfamily. 82.1 1.1 2.3E-05 42.3 2.8 23 133-155 19-41 (190)
414 PRK00023 cmk cytidylate kinase 82.1 1.4 3E-05 42.7 3.6 24 134-157 5-28 (225)
415 PRK09493 glnQ glutamine ABC tr 82.1 1.1 2.5E-05 44.0 3.0 23 134-156 28-50 (240)
416 cd03230 ABC_DR_subfamily_A Thi 82.0 1.3 2.7E-05 41.1 3.1 23 134-156 27-49 (173)
417 PRK11247 ssuB aliphatic sulfon 82.0 1.2 2.6E-05 44.3 3.1 23 134-156 39-61 (257)
418 PRK14242 phosphate transporter 82.0 1.2 2.6E-05 44.3 3.2 22 134-155 33-54 (253)
419 cd03232 ABC_PDR_domain2 The pl 82.0 1.2 2.7E-05 42.0 3.1 23 133-155 33-55 (192)
420 PRK09544 znuC high-affinity zi 82.0 1.2 2.6E-05 44.1 3.1 23 134-156 31-53 (251)
421 PRK10908 cell division protein 82.0 1.2 2.6E-05 43.2 3.1 24 133-156 28-51 (222)
422 cd03252 ABCC_Hemolysin The ABC 82.0 1.2 2.6E-05 43.8 3.1 24 133-156 28-51 (237)
423 PF00308 Bac_DnaA: Bacterial d 81.9 2.3 5.1E-05 41.0 5.0 51 133-191 34-84 (219)
424 cd00878 Arf_Arl Arf (ADP-ribos 81.9 1.1 2.3E-05 40.7 2.6 21 136-156 2-22 (158)
425 cd03268 ABC_BcrA_bacitracin_re 81.9 1.2 2.7E-05 42.7 3.1 23 134-156 27-49 (208)
426 cd03267 ABC_NatA_like Similar 81.9 1.2 2.6E-05 43.7 3.1 24 133-156 47-70 (236)
427 TIGR01277 thiQ thiamine ABC tr 81.9 1.2 2.7E-05 42.8 3.1 24 133-156 24-47 (213)
428 TIGR01978 sufC FeS assembly AT 81.8 1.2 2.5E-05 44.1 3.0 23 134-156 27-49 (243)
429 PRK14238 phosphate transporter 81.8 1.2 2.5E-05 44.9 3.0 23 134-156 51-73 (271)
430 TIGR01189 ccmA heme ABC export 81.8 1.3 2.8E-05 42.1 3.2 24 133-156 26-49 (198)
431 cd04124 RabL2 RabL2 subfamily. 81.7 1.2 2.7E-05 40.5 3.0 20 136-155 3-22 (161)
432 cd03279 ABC_sbcCD SbcCD and ot 81.7 1.2 2.5E-05 43.0 2.9 21 134-154 29-49 (213)
433 PRK14250 phosphate ABC transpo 81.6 1.2 2.7E-05 43.8 3.1 23 134-156 30-52 (241)
434 cd03262 ABC_HisP_GlnQ_permease 81.6 1.3 2.8E-05 42.7 3.1 23 134-156 27-49 (213)
435 PF00071 Ras: Ras family; Int 81.6 1.3 2.9E-05 40.2 3.1 21 136-156 2-22 (162)
436 cd04177 RSR1 RSR1 subgroup. R 81.5 1.2 2.5E-05 41.0 2.8 20 136-155 4-23 (168)
437 PRK14247 phosphate ABC transpo 81.5 1.3 2.7E-05 44.1 3.1 23 134-156 30-52 (250)
438 cd03215 ABC_Carb_Monos_II This 81.5 1.3 2.8E-05 41.4 3.0 24 134-157 27-50 (182)
439 PRK10895 lipopolysaccharide AB 81.5 1.2 2.7E-05 43.8 3.0 23 134-156 30-52 (241)
440 PRK05416 glmZ(sRNA)-inactivati 81.4 1.2 2.7E-05 44.7 3.0 22 133-154 6-27 (288)
441 COG4240 Predicted kinase [Gene 81.4 2.2 4.8E-05 40.1 4.3 41 122-162 38-79 (300)
442 PRK14738 gmk guanylate kinase; 81.4 1.3 2.9E-05 42.3 3.2 25 132-156 12-36 (206)
443 cd04150 Arf1_5_like Arf1-Arf5- 81.4 1.2 2.6E-05 40.5 2.7 20 136-155 3-22 (159)
444 PRK06835 DNA replication prote 81.4 2.6 5.7E-05 43.4 5.4 27 134-160 184-210 (329)
445 cd04138 H_N_K_Ras_like H-Ras/N 81.4 1.3 2.8E-05 40.2 3.0 22 135-156 3-24 (162)
446 cd04153 Arl5_Arl8 Arl5/Arl8 su 81.4 2 4.3E-05 39.8 4.2 32 124-155 6-37 (174)
447 PRK11701 phnK phosphonate C-P 81.4 1.3 2.8E-05 44.3 3.1 23 134-156 33-55 (258)
448 cd03233 ABC_PDR_domain1 The pl 81.4 1.3 2.7E-05 42.3 2.9 23 134-156 34-56 (202)
449 PRK14241 phosphate transporter 81.4 1.3 2.8E-05 44.2 3.2 23 134-156 31-53 (258)
450 PRK10575 iron-hydroxamate tran 81.3 1.2 2.7E-05 44.5 3.0 23 134-156 38-60 (265)
451 PRK11308 dppF dipeptide transp 81.3 1.3 2.8E-05 45.9 3.1 23 134-156 42-64 (327)
452 PRK12377 putative replication 81.2 3 6.6E-05 40.9 5.6 56 122-188 91-146 (248)
453 PRK09473 oppD oligopeptide tra 81.2 1.2 2.5E-05 46.2 2.8 24 134-157 43-66 (330)
454 cd03249 ABC_MTABC3_MDL1_MDL2 M 81.1 1.3 2.8E-05 43.5 3.1 23 134-156 30-52 (238)
455 PRK11300 livG leucine/isoleuci 81.1 1.3 2.7E-05 44.2 3.0 23 134-156 32-54 (255)
456 PRK12724 flagellar biosynthesi 81.1 2.1 4.6E-05 45.0 4.7 25 133-157 223-247 (432)
457 cd01888 eIF2_gamma eIF2-gamma 81.1 1.3 2.8E-05 42.3 3.0 19 135-153 2-20 (203)
458 cd04123 Rab21 Rab21 subfamily. 81.1 1.3 2.9E-05 40.1 3.0 22 135-156 2-23 (162)
459 PRK13976 thymidylate kinase; P 81.0 1.6 3.4E-05 41.7 3.5 26 135-160 2-27 (209)
460 cd04140 ARHI_like ARHI subfami 81.0 1.3 2.7E-05 40.6 2.8 21 135-155 3-23 (165)
461 PRK04220 2-phosphoglycerate ki 80.9 1.6 3.5E-05 43.8 3.5 25 133-157 92-116 (301)
462 COG4555 NatA ABC-type Na+ tran 80.9 1.4 3E-05 40.8 2.7 26 132-157 27-52 (245)
463 TIGR03873 F420-0_ABC_ATP propo 80.9 1.3 2.8E-05 44.1 3.0 23 134-156 28-50 (256)
464 cd04160 Arfrp1 Arfrp1 subfamil 80.9 1.4 3E-05 40.4 3.0 21 136-156 2-22 (167)
465 cd03273 ABC_SMC2_euk Eukaryoti 80.9 1.4 3E-05 43.8 3.1 24 133-156 25-48 (251)
466 COG1127 Ttg2A ABC-type transpo 80.9 1.4 3.1E-05 42.0 2.9 23 134-156 35-57 (263)
467 cd03228 ABCC_MRP_Like The MRP 80.9 1.5 3.2E-05 40.5 3.2 24 133-156 28-51 (171)
468 PRK13645 cbiO cobalt transport 80.8 1.3 2.8E-05 45.0 3.0 23 134-156 38-60 (289)
469 PRK14730 coaE dephospho-CoA ki 80.8 1.6 3.4E-05 41.4 3.3 23 134-156 2-24 (195)
470 COG0488 Uup ATPase components 80.8 11 0.00024 41.6 10.2 24 134-157 349-372 (530)
471 TIGR03410 urea_trans_UrtE urea 80.8 1.3 2.9E-05 43.2 3.0 24 133-156 26-49 (230)
472 TIGR02881 spore_V_K stage V sp 80.8 1.5 3.2E-05 43.9 3.3 26 133-158 42-67 (261)
473 PRK14262 phosphate ABC transpo 80.8 1.4 3E-05 43.8 3.1 22 134-155 30-51 (250)
474 PRK14239 phosphate transporter 80.8 1.4 3E-05 43.9 3.1 22 134-155 32-53 (252)
475 PRK11264 putative amino-acid A 80.8 1.3 2.9E-05 43.8 3.0 23 134-156 30-52 (250)
476 PRK02496 adk adenylate kinase; 80.7 1.6 3.4E-05 41.0 3.3 23 135-157 3-25 (184)
477 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 80.7 1.4 3E-05 42.9 3.0 24 133-156 48-71 (224)
478 cd01878 HflX HflX subfamily. 80.7 1.4 3.1E-05 42.0 3.2 26 131-156 39-64 (204)
479 COG2274 SunT ABC-type bacterio 80.7 1.2 2.7E-05 50.8 3.0 23 134-156 500-522 (709)
480 PRK14274 phosphate ABC transpo 80.6 1.4 3.1E-05 43.9 3.2 23 134-156 39-61 (259)
481 cd01130 VirB11-like_ATPase Typ 80.6 1.6 3.4E-05 41.0 3.3 24 133-156 25-48 (186)
482 PRK14248 phosphate ABC transpo 80.6 1.4 2.9E-05 44.3 3.0 22 134-155 48-69 (268)
483 PRK12402 replication factor C 80.6 2.6 5.7E-05 44.0 5.3 37 122-158 25-61 (337)
484 COG0194 Gmk Guanylate kinase [ 80.5 1.8 3.8E-05 39.7 3.3 24 134-157 5-28 (191)
485 cd01897 NOG NOG1 is a nucleola 80.4 1.4 3.1E-05 40.4 2.9 23 134-156 1-23 (168)
486 PF01935 DUF87: Domain of unkn 80.4 2.5 5.4E-05 41.2 4.8 35 134-168 24-58 (229)
487 cd03294 ABC_Pro_Gly_Bertaine T 80.4 1.4 3.1E-05 44.2 3.1 23 134-156 51-73 (269)
488 TIGR03598 GTPase_YsxC ribosome 80.3 1.7 3.7E-05 40.5 3.4 26 131-156 16-41 (179)
489 PRK14243 phosphate transporter 80.3 1.5 3.2E-05 43.9 3.2 22 134-155 37-58 (264)
490 cd01120 RecA-like_NTPases RecA 80.3 1.5 3.3E-05 39.9 3.0 34 135-170 1-34 (165)
491 PRK10744 pstB phosphate transp 80.3 1.4 3E-05 44.0 3.0 23 134-156 40-62 (260)
492 TIGR02237 recomb_radB DNA repa 80.3 2.9 6.3E-05 40.1 5.1 38 134-173 13-50 (209)
493 PF13614 AAA_31: AAA domain; P 80.3 2.2 4.8E-05 38.6 4.1 28 134-161 1-29 (157)
494 cd03245 ABCC_bacteriocin_expor 80.2 1.5 3.2E-05 42.5 3.1 24 133-156 30-53 (220)
495 PRK14737 gmk guanylate kinase; 80.2 1.6 3.4E-05 40.9 3.1 24 133-156 4-27 (186)
496 cd03236 ABC_RNaseL_inhibitor_d 80.2 1.5 3.3E-05 43.5 3.2 23 134-156 27-49 (255)
497 COG1135 AbcC ABC-type metal io 80.1 1.5 3.3E-05 43.5 3.0 22 134-155 33-54 (339)
498 cd00267 ABC_ATPase ABC (ATP-bi 80.1 1.6 3.5E-05 39.6 3.1 24 134-157 26-49 (157)
499 cd03290 ABCC_SUR1_N The SUR do 80.1 1.5 3.3E-05 42.4 3.1 24 133-156 27-50 (218)
500 PRK13638 cbiO cobalt transport 80.1 1.4 3E-05 44.3 2.9 23 134-156 28-50 (271)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-40 Score=373.63 Aligned_cols=326 Identities=27% Similarity=0.401 Sum_probs=255.8
Q ss_pred hhhHHHHHHHhhhcchhhHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHH
Q 004197 2 VESIVTVVLEFVKCLAPPIERRLGYLRNYNANFRNLKAEIDKLKDESRSIQHRVSEAERKGEKIEEKVKKWLVSANNTIE 81 (769)
Q Consensus 2 a~~~v~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~W~~~~~~~~~ 81 (769)
|++.++..+++ +++.+.++..+ +.+..+++..|++.+..++.++++|+++... ...+..|.+.+++++|
T Consensus 1 ~~~~~s~~~~~---~~~~l~~~~~~-------~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~ 69 (889)
T KOG4658|consen 1 MGACVSFGVEK---LDQLLNRESEC-------LDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVY 69 (889)
T ss_pred CCeEEEEehhh---HHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHH
Confidence 34566667777 88889999888 8888889999999999999999999988655 6788999999999999
Q ss_pred HHHhhhhhhhh-----------------cccccccccCC-Ccchhcccchhhhhh-------------------------
Q 004197 82 QAAKFIDDEVT-----------------TNKRCLMGLCP-NLKTRYRLSKKAETE------------------------- 118 (769)
Q Consensus 82 ~~ed~~d~~~~-----------------~~~~c~~~~~~-~~~~~~~i~~~~~~~------------------------- 118 (769)
+++|+++.+.. ..+.|+...|+ +....|.+++++..+
T Consensus 70 ~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~ 149 (889)
T KOG4658|consen 70 LAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREK 149 (889)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhh
Confidence 99999865411 12234433343 333444444444433
Q ss_pred ---------------hhHHHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh-hhcCCCeEEEE-------------
Q 004197 119 ---------------EKGLAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI-EDKLCDMVVFS------------- 169 (769)
Q Consensus 119 ---------------~~~~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~-~~~~F~~~~~~------------- 169 (769)
...+.+.+.|.+++..++||+||||+||||||+.|||+.. ++++||.++||
T Consensus 150 ~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~ 229 (889)
T KOG4658|consen 150 VETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQ 229 (889)
T ss_pred cccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHH
Confidence 0125677778888889999999999999999999999988 99999999999
Q ss_pred --------------------------------------------------------------------------------
Q 004197 170 -------------------------------------------------------------------------------- 169 (769)
Q Consensus 170 -------------------------------------------------------------------------------- 169 (769)
T Consensus 230 ~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~ 309 (889)
T KOG4658|consen 230 TILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD 309 (889)
T ss_pred HHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 004197 170 -------------------------------------------------------------------------------- 169 (769)
Q Consensus 170 -------------------------------------------------------------------------------- 169 (769)
T Consensus 310 ~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~ 389 (889)
T KOG4658|consen 310 YPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAAD 389 (889)
T ss_pred ccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 004197 170 -------------------------------------------------------------------------------- 169 (769)
Q Consensus 170 -------------------------------------------------------------------------------- 169 (769)
T Consensus 390 ~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 390 FSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred CCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHH
Confidence
Q ss_pred --Ec--CCCceEehhHHHHHHHHHHhh-----ccceEEEEeCCcccccCCccccCcceEEEeecCCCCCCCCccCCCCcE
Q 004197 170 --ED--GSNKFFSMHDVVRDVAISIAF-----RDKIAFAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPEVLESPQLE 240 (769)
Q Consensus 170 --~~--~~~~~~~~hdl~~dl~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr 240 (769)
.. ++...|+|||+|||+|.+++. ++. .+...+.+....|....+..+|++++.++.+..++....+++|+
T Consensus 470 ~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~ 548 (889)
T KOG4658|consen 470 IEERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLR 548 (889)
T ss_pred hhcccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccc
Confidence 11 355789999999999999998 555 33333335555677777889999999999999999888888999
Q ss_pred -EEecCCCC-ccccCCcchHhhhcCCcccEEEecCc-ccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEE
Q 004197 241 -FLLISPKN-SFVAPNVSENFFKRTKKLRVLDLTRM-RLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILS 317 (769)
Q Consensus 241 -l~l~~~~~-~~~~~~~~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~ 317 (769)
|.+..+.. ...++ .++|..++.||||||++| .+..+|++|+.|.|||||+++++.++.+ |..+++|+.|++|+
T Consensus 549 tLll~~n~~~l~~is---~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 549 TLLLQRNSDWLLEIS---GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL-PSGLGNLKKLIYLN 624 (889)
T ss_pred eEEEeecchhhhhcC---HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc-chHHHHHHhhheec
Confidence 88887763 56677 788999999999999976 4568898888888888888888888888 88888888888888
Q ss_pred eecC-CCcccchhhccCCCCcEEEccC
Q 004197 318 FWRS-DIVHLPKALGQLTKLRLLDLTD 343 (769)
Q Consensus 318 l~~~-~l~~lp~~i~~l~~L~~L~l~~ 343 (769)
+..+ .+..+|.....|.+||+|.+..
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccccccccchhhhcccccEEEeec
Confidence 8887 3444455555577777776655
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.4e-36 Score=359.00 Aligned_cols=433 Identities=20% Similarity=0.259 Sum_probs=258.8
Q ss_pred eEehhHHHHHHHHHHhhccc------eEEEEeCCcccccCCccccCcceEEEeecCCCCCCC---C-ccCCCCcE-EEec
Q 004197 176 FFSMHDVVRDVAISIAFRDK------IAFAVRNKDVWKWPDADALKKYFAIFLKDSIINDIP---E-VLESPQLE-FLLI 244 (769)
Q Consensus 176 ~~~~hdl~~dl~~~~~~~e~------~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~---~-~~~~~~Lr-l~l~ 244 (769)
.+.|||++|++|++++.++. .++....+............+++.+++....+..+. . ...+++|+ +.+.
T Consensus 487 ~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~ 566 (1153)
T PLN03210 487 IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFY 566 (1153)
T ss_pred eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEe
Confidence 48999999999999987543 111111100000001112345666666655443322 1 12566666 5554
Q ss_pred CCC------CccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEe
Q 004197 245 SPK------NSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSF 318 (769)
Q Consensus 245 ~~~------~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l 318 (769)
... ....+| .++..-..+||+|++.++.+..+|..+ ...+|++|+++++.+..+ |..+..+++|++|++
T Consensus 567 ~~~~~~~~~~~~~lp---~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L-~~~~~~l~~Lk~L~L 641 (1153)
T PLN03210 567 TKKWDQKKEVRWHLP---EGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKL-WDGVHSLTGLRNIDL 641 (1153)
T ss_pred cccccccccceeecC---cchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccc-ccccccCCCCCEEEC
Confidence 331 112344 332222245777777777777776665 456677777777777776 666667777777777
Q ss_pred ecC-CCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCcc
Q 004197 319 WRS-DIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLT 397 (769)
Q Consensus 319 ~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 397 (769)
+++ .+..+| .++.+++|++|++.+|..+..+|.. ++++++|+.|++++|.....+| ..+ ++++|+
T Consensus 642 s~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp-----------~~i-~l~sL~ 707 (1153)
T PLN03210 642 RGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP-----------TGI-NLKSLY 707 (1153)
T ss_pred CCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC-----------CcC-CCCCCC
Confidence 765 455565 3666777777777777666666666 6677777777776665443333 111 455666
Q ss_pred EEEEEeeCCCCCCcccccccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccc
Q 004197 398 TIEINIKNDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAIN 477 (769)
Q Consensus 398 ~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~ 477 (769)
.|++++|.. +..+| ...+
T Consensus 708 ~L~Lsgc~~------------------------L~~~p--------------------------------------~~~~ 725 (1153)
T PLN03210 708 RLNLSGCSR------------------------LKSFP--------------------------------------DIST 725 (1153)
T ss_pred EEeCCCCCC------------------------ccccc--------------------------------------cccC
Confidence 666655431 11111 0012
Q ss_pred cccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCcc--ccccccCCccceeeccccccccccccccccc
Q 004197 478 KVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSME--MVACDAFPLLESLTLHNLINMQRICIDRLKV 555 (769)
Q Consensus 478 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~ 555 (769)
+|+.|++.++. ....+.. ..+++|..|.+.++...+-+..... ......+++|+.|.+.+++.+..++.. .
T Consensus 726 nL~~L~L~~n~-i~~lP~~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s---i 798 (1153)
T PLN03210 726 NISWLDLDETA-IEEFPSN---LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS---I 798 (1153)
T ss_pred CcCeeecCCCc-ccccccc---ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh---h
Confidence 33344443332 1122211 1355666666655432111000000 001223578999999988888777653 5
Q ss_pred cccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCC
Q 004197 556 ESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLP 635 (769)
Q Consensus 556 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~ 635 (769)
+.+++|+.|++++|+.+..+|.. ..+++|+.|++++|..+..++. ..++|+.|+|.+++++.++
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~-------~~~nL~~L~Ls~n~i~~iP------ 862 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPD-------ISTNISDLNLSRTGIEEVP------ 862 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccc-------cccccCEeECCCCCCccCh------
Confidence 67899999999999999988753 2689999999999998877652 3478999999999888753
Q ss_pred CccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeeccccccC-----CcCeeeecccCccccccC
Q 004197 636 IMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDH-----VTPRFVFQRVTTLTLQDL 710 (769)
Q Consensus 636 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~-----~~~~~~l~~L~~L~l~~c 710 (769)
..+..+++|+.|++.+|++++.++. ....+++|+.+++++|++++.+.....-.. ......+|+...+.+.+|
T Consensus 863 ~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC 940 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINC 940 (1153)
T ss_pred HHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccc
Confidence 3456889999999999999999843 457889999999999999976532110000 001123555566677777
Q ss_pred cccc
Q 004197 711 PELR 714 (769)
Q Consensus 711 ~~L~ 714 (769)
.+|.
T Consensus 941 ~~L~ 944 (1153)
T PLN03210 941 FNLD 944 (1153)
T ss_pred cCCC
Confidence 6665
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.3e-33 Score=333.65 Aligned_cols=471 Identities=18% Similarity=0.142 Sum_probs=272.5
Q ss_pred ccCcceEEEeecCCCC-CCCCc-c-CCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccC-CCCccccccC
Q 004197 213 ALKKYFAIFLKDSIIN-DIPEV-L-ESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLL-SLPSSIDLLV 287 (769)
Q Consensus 213 ~~~~lr~L~l~~~~~~-~l~~~-~-~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~ 287 (769)
..++++.|++++|.+. .+|.. . .+++|| +.+.++.....+| ...+++|++|++++|.+. .+|..++.++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p------~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP------RGSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC------ccccCCCCEEECcCCcccccCChHHhcCC
Confidence 3567777888777763 56643 2 677777 7777776665666 245677777777777776 5677777778
Q ss_pred CccEEEecccccc-ccChhhhhccCCCcEEEeecCCCc-ccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEE
Q 004197 288 NLRTLCLDQSILG-DIDIAIIGKLGNLEILSFWRSDIV-HLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELY 365 (769)
Q Consensus 288 ~L~~L~L~~~~l~-~l~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~ 365 (769)
+|++|++++|.+. .+ |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|+
T Consensus 165 ~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ 242 (968)
T PLN00113 165 SLKVLDLGGNVLVGKI-PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLD 242 (968)
T ss_pred CCCEEECccCcccccC-ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEE
Confidence 8888888777755 45 777777888888888777665 56777777788888887777644456665 77777888888
Q ss_pred ccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCC-CCCcccc-cccccEEEEEEcCCccccccccccccccc
Q 004197 366 MGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDI-ILPEGFF-ARKLERFKISIGNESFMASLPVAKDWFRS 443 (769)
Q Consensus 366 l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~l~i~~~~~~~~~~l~~~~~~~~~ 443 (769)
+++|.+....+ ..++++++|+.|+++.+... .+|..+. +++|+.|.+.. +...+.+|. +
T Consensus 243 L~~n~l~~~~p-----------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~--n~l~~~~p~---~--- 303 (968)
T PLN00113 243 LVYNNLTGPIP-----------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD--NSLSGEIPE---L--- 303 (968)
T ss_pred CcCceeccccC-----------hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC--CeeccCCCh---h---
Confidence 77776654444 56677777777777776643 3444443 56666665432 211122221 1
Q ss_pred cccccccCcccccceEEeecccccccccc-ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceecc-
Q 004197 444 RSHFLINNNRESLRELKLKLDFTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVD- 521 (769)
Q Consensus 444 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~- 521 (769)
...+++|+.|++..+........ +..+++|+.|++.++......+.. ++.+++|+.|+++++.....+..
T Consensus 304 ------~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 304 ------VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN--LGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred ------HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--HhCCCCCcEEECCCCeeEeeCChh
Confidence 23455666666666554433333 566666777776666544333332 44556666666665532111100
Q ss_pred ------------------CccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhhc
Q 004197 522 ------------------SMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAKC 583 (769)
Q Consensus 522 ------------------~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 583 (769)
+........+++|+.|.+.++.-....+. ....+++|+.|++++|.- ....+ .....
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l-~~~~~-~~~~~ 450 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS---EFTKLPLVYFLDISNNNL-QGRIN-SRKWD 450 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh---hHhcCCCCCEEECcCCcc-cCccC-hhhcc
Confidence 00000122344455555544432222211 123455555555555432 22212 12334
Q ss_pred CCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhh
Q 004197 584 LPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASM 663 (769)
Q Consensus 584 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 663 (769)
+++|+.|++.+|.....++. ....++|+.|++++|+++.. .+..+..+++|+.|++++|.-...+ +..
T Consensus 451 l~~L~~L~L~~n~~~~~~p~-----~~~~~~L~~L~ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~ 518 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPD-----SFGSKRLENLDLSRNQFSGA-----VPRKLGSLSELMQLKLSENKLSGEI--PDE 518 (968)
T ss_pred CCCCcEEECcCceeeeecCc-----ccccccceEEECcCCccCCc-----cChhhhhhhccCEEECcCCcceeeC--ChH
Confidence 55666666666554433331 12235666666666655433 2334456677777777776433333 344
Q ss_pred HhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCCCccccCCCcceEEEecCCCceeec
Q 004197 664 IRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCDKLKIFG 743 (769)
Q Consensus 664 ~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~l~ 743 (769)
+.++++|++|++++| .++..++. ....+++|++|++++|+....+|.....+ ++|+.|++++|+-...+|
T Consensus 519 ~~~l~~L~~L~Ls~N-~l~~~~p~-------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 519 LSSCKKLVSLDLSHN-QLSGQIPA-------SFSEMPVLSQLDLSQNQLSGEIPKNLGNV--ESLVQVNISHNHLHGSLP 588 (968)
T ss_pred HcCccCCCEEECCCC-cccccCCh-------hHhCcccCCEEECCCCcccccCChhHhcC--cccCEEeccCCcceeeCC
Confidence 566777777777776 33322111 13445677777777776666677665544 777788888777666666
Q ss_pred cC
Q 004197 744 AD 745 (769)
Q Consensus 744 ~~ 745 (769)
..
T Consensus 589 ~~ 590 (968)
T PLN00113 589 ST 590 (968)
T ss_pred Cc
Confidence 54
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-32 Score=330.08 Aligned_cols=484 Identities=18% Similarity=0.189 Sum_probs=340.6
Q ss_pred CcceEEEeecCCCCC-CCCc-cCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccC-CCCccccccCCcc
Q 004197 215 KKYFAIFLKDSIIND-IPEV-LESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLL-SLPSSIDLLVNLR 290 (769)
Q Consensus 215 ~~lr~L~l~~~~~~~-l~~~-~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~ 290 (769)
.+++.|+++++.+.. ++.. ..+++|+ |.+.++.....+| .+++..+++||+|++++|.+. .+|. +.+.+|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip---~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP---DDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCC---hHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence 478999999988743 3433 3899999 9999888777888 788889999999999999987 4563 6789999
Q ss_pred EEEecccccc-ccChhhhhccCCCcEEEeecCCCc-ccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccC
Q 004197 291 TLCLDQSILG-DIDIAIIGKLGNLEILSFWRSDIV-HLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGN 368 (769)
Q Consensus 291 ~L~L~~~~l~-~l~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~ 368 (769)
+|++++|.+. .+ |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++
T Consensus 144 ~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~ 221 (968)
T PLN00113 144 TLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGY 221 (968)
T ss_pred EEECcCCcccccC-ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcC
Confidence 9999999987 56 899999999999999999876 78999999999999999999855667877 99999999999999
Q ss_pred CccccceeccccccccCCchhhcCCCCccEEEEEeeCCC-CCCcccc-cccccEEEEEEcCCcccccccccccccccccc
Q 004197 369 CSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDI-ILPEGFF-ARKLERFKISIGNESFMASLPVAKDWFRSRSH 446 (769)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~ 446 (769)
|.+.+.++ ..++.+++|+.|++++|... .+|..+. .++|+.|.+.... ..+.+|..
T Consensus 222 n~l~~~~p-----------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~--------- 279 (968)
T PLN00113 222 NNLSGEIP-----------YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK--LSGPIPPS--------- 279 (968)
T ss_pred CccCCcCC-----------hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe--eeccCchh---------
Confidence 98876555 67899999999999998854 4565554 7788887764322 22233321
Q ss_pred ccccCcccccceEEeecccccccccc-ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccc
Q 004197 447 FLINNNRESLRELKLKLDFTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEM 525 (769)
Q Consensus 447 ~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 525 (769)
...+.+|+.|+++.+........ +..+++|+.|++.++......+.. +..+++|+.|.+.++.....+ .
T Consensus 280 ---l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~-----p 349 (968)
T PLN00113 280 ---IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA--LTSLPRLQVLQLWSNKFSGEI-----P 349 (968)
T ss_pred ---HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh--HhcCCCCCEEECcCCCCcCcC-----C
Confidence 34567899999998876544444 788999999999988765555443 567999999999988632221 1
Q ss_pred cccccCCccceeecccccccccccccc---------------------ccccccCCccEEEEcCCCCCccccchHHhhcC
Q 004197 526 VACDAFPLLESLTLHNLINMQRICIDR---------------------LKVESFNKLKTIKVENCDELSNIFWLSTAKCL 584 (769)
Q Consensus 526 ~~~~~f~~L~~L~l~~~~~l~~~~~~~---------------------~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l 584 (769)
.....+++|+.|.++++.-...++... .....+++|+.|++++|+....+|. .+..+
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l 427 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--EFTKL 427 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh--hHhcC
Confidence 134456778888887654222222110 0012344555555555432222221 34455
Q ss_pred CCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhH
Q 004197 585 PRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMI 664 (769)
Q Consensus 585 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 664 (769)
+.|+.|++++|.....++. ....+++|+.|++++|++... .+. ....++|+.|++++|.....+ +..+
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~~~~~-----~p~-~~~~~~L~~L~ls~n~l~~~~--~~~~ 495 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINS----RKWDMPSLQMLSLARNKFFGG-----LPD-SFGSKRLENLDLSRNQFSGAV--PRKL 495 (968)
T ss_pred CCCCEEECcCCcccCccCh----hhccCCCCcEEECcCceeeee-----cCc-ccccccceEEECcCCccCCcc--Chhh
Confidence 5555555555442222211 122456666666666654432 111 123467777888776543333 3456
Q ss_pred hhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCCCccccCCCcceEEEecCCCceeecc
Q 004197 665 RSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCDKLKIFGA 744 (769)
Q Consensus 665 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~l~~ 744 (769)
.++++|++|++++| .+...++. ....+++|++|+|++|.....+|.....+ ++|+.|++++|.-...+|.
T Consensus 496 ~~l~~L~~L~Ls~N-~l~~~~p~-------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 496 GSLSELMQLKLSEN-KLSGEIPD-------ELSSCKKLVSLDLSHNQLSGQIPASFSEM--PVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred hhhhccCEEECcCC-cceeeCCh-------HHcCccCCCEEECCCCcccccCChhHhCc--ccCCEEECCCCcccccCCh
Confidence 77888888888887 44332221 14457889999999987666677665554 8999999999988778999
Q ss_pred CCCCcccccccCCCCCC
Q 004197 745 DLSQNNEVDQLGIPAQR 761 (769)
Q Consensus 745 ~~~~~~~l~~l~i~~~~ 761 (769)
....++.|+.++|.+++
T Consensus 566 ~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 566 NLGNVESLVQVNISHNH 582 (968)
T ss_pred hHhcCcccCEEeccCCc
Confidence 88889999999887764
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1e-23 Score=252.29 Aligned_cols=516 Identities=16% Similarity=0.206 Sum_probs=287.8
Q ss_pred hhHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHc---chhhHHHHHHHHHHHHHHHH----HHHhhh
Q 004197 18 PPIERRLGYLRNYNANFRNLKAEIDKLKDESRSIQHRVSE---AERK---GEKIEEKVKKWLVSANNTIE----QAAKFI 87 (769)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~---a~~~---~~~~~~~~~~W~~~~~~~~~----~~ed~~ 87 (769)
..+..+.+|.+|++.+++.- ...+.+.+....|...|++ |.+. ... ......|...++.+.. ++.+++
T Consensus 349 ~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~-~k~~~~W~~~l~~L~~~~~~~I~~~L 426 (1153)
T PLN03210 349 CLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLR-GRDKEDWMDMLPRLRNGLDGKIEKTL 426 (1153)
T ss_pred cCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHhCccHHHHHHH
Confidence 45667788999998887542 1234466666777777776 2211 111 1234688887777654 334444
Q ss_pred ----hhhhh-cccccccccCCCcchhcccchhhhhhhhHHHHHH----------HhhcCCccEEEEEccCCCchHHHHHH
Q 004197 88 ----DDEVT-TNKRCLMGLCPNLKTRYRLSKKAETEEKGLAMQT----------ALIDVNVSIIGVYGMGGIGKTTLVKE 152 (769)
Q Consensus 88 ----d~~~~-~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~i~~----------~l~~~~~~vi~I~G~gG~GKTtla~~ 152 (769)
|.++. ..|.||.+ ++.|+..+.+..-. .|+++ .|++. ..|.+.+ +.+..-.|.+.
T Consensus 427 ~~SYd~L~~~~~k~~Fl~-ia~ff~~~~~~~v~------~~l~~~~~~~~~~l~~L~~k--sLi~~~~-~~~~MHdLl~~ 496 (1153)
T PLN03210 427 RVSYDGLNNKKDKAIFRH-IACLFNGEKVNDIK------LLLANSDLDVNIGLKNLVDK--SLIHVRE-DIVEMHSLLQE 496 (1153)
T ss_pred HHhhhccCccchhhhhhe-ehhhcCCCCHHHHH------HHHHhcCCCchhChHHHHhc--CCEEEcC-CeEEhhhHHHH
Confidence 45554 47889998 77776654432211 22222 12221 1222221 22232233444
Q ss_pred HHHHhhhhcCCCeEEEEEcCCCce-EehhHHHHHHHHHHhhccceE-EEEeCCcccc--cC--CccccCcceEEEeecCC
Q 004197 153 FARRAIEDKLCDMVVFSEDGSNKF-FSMHDVVRDVAISIAFRDKIA-FAVRNKDVWK--WP--DADALKKYFAIFLKDSI 226 (769)
Q Consensus 153 v~~~~~~~~~F~~~~~~~~~~~~~-~~~hdl~~dl~~~~~~~e~~~-~~~~~~~~~~--~~--~~~~~~~lr~L~l~~~~ 226 (769)
...+...+..-+ .+.... +..+| +.++.....+.+... +...-....+ +. ....+.+++.|.+..+.
T Consensus 497 ~~r~i~~~~~~~------~~~r~~l~~~~d-i~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 497 MGKEIVRAQSNE------PGEREFLVDAKD-ICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred HHHHHHHhhcCC------CCcceeEeCHHH-HHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 333322111111 011111 12222 223222222221111 1111011110 11 12346778888886543
Q ss_pred C-------CCCCCcc-CC-CCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEEEecc
Q 004197 227 I-------NDIPEVL-ES-PQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQ 296 (769)
Q Consensus 227 ~-------~~l~~~~-~~-~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 296 (769)
. ..+|..+ .+ .+|| |.+.++ ....+| .. | .+.+|+.|+++++.+..+|..+..+++|++|+|++
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP---~~-f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMP---SN-F-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecCC-CCCCCC---Cc-C-CccCCcEEECcCccccccccccccCCCCCEEECCC
Confidence 2 2344433 33 4689 776654 556777 44 3 57899999999999999999999999999999999
Q ss_pred cc-ccccChhhhhccCCCcEEEeecC-CCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccc
Q 004197 297 SI-LGDIDIAIIGKLGNLEILSFWRS-DIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWE 374 (769)
Q Consensus 297 ~~-l~~l~p~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~ 374 (769)
+. ++.+ | .++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.+ + ++++|++|++++|.....
T Consensus 644 ~~~l~~i-p-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 644 SKNLKEI-P-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKS 719 (1153)
T ss_pred CCCcCcC-C-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccc
Confidence 86 7888 5 5899999999999998 78899999999999999999999999999986 4 899999999999876533
Q ss_pred eeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcCCccccccccccccccccccccccCccc
Q 004197 375 VERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRE 454 (769)
Q Consensus 375 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 454 (769)
.+ ...++|+.|++..+....+|..+.+++|..|.+...... .+. .. ....
T Consensus 720 ~p--------------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~---~l~---~~---------~~~l- 769 (1153)
T PLN03210 720 FP--------------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE---KLW---ER---------VQPL- 769 (1153)
T ss_pred cc--------------cccCCcCeeecCCCccccccccccccccccccccccchh---hcc---cc---------cccc-
Confidence 32 124678999999998888887766667766654321110 000 00 0000
Q ss_pred ccceEEeeccccccccccccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCcc
Q 004197 455 SLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLL 534 (769)
Q Consensus 455 ~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L 534 (769)
.+.....+++|+.|.+.++.....++.. ++.+++|+.|++.+|..++.++ ....+++|
T Consensus 770 --------------~~~~~~~~~sL~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP------~~~~L~sL 827 (1153)
T PLN03210 770 --------------TPLMTMLSPSLTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLP------TGINLESL 827 (1153)
T ss_pred --------------chhhhhccccchheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeC------CCCCcccc
Confidence 0000122345555555555444444333 3455555555555555544432 11134555
Q ss_pred ceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCc
Q 004197 535 ESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPN 614 (769)
Q Consensus 535 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 614 (769)
+.|.+++|..+..++. ..++|+.|+++++ .++.+|. .+..+++|+.|++.+|+.+..++.. ...+++
T Consensus 828 ~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~----~~~L~~ 894 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPD------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLN----ISKLKH 894 (1153)
T ss_pred CEEECCCCCccccccc------cccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccCcc----cccccC
Confidence 5555555555544432 1244555555543 3444432 3445555555555555555554431 123455
Q ss_pred ccccccccc-ccee
Q 004197 615 LEALEISEI-NVDK 627 (769)
Q Consensus 615 L~~L~L~~~-~l~~ 627 (769)
|+.+++++| +++.
T Consensus 895 L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 895 LETVDFSDCGALTE 908 (1153)
T ss_pred CCeeecCCCccccc
Confidence 555555555 4443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.4e-24 Score=216.76 Aligned_cols=391 Identities=18% Similarity=0.210 Sum_probs=241.2
Q ss_pred ccEEEecCcccCCCCc-cccc-c-CCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEcc
Q 004197 266 LRVLDLTRMRLLSLPS-SIDL-L-VNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLT 342 (769)
Q Consensus 266 Lr~L~L~~~~i~~lp~-~i~~-l-~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 342 (769)
-+.||.++..+..+.. .+.. + ..-+.|++++|.+.++++..|.++++|+.+++..|.++.+|...+-..+|.+|++.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 3566777776654321 1111 2 23456888888888887788888888888888888888888777777778888888
Q ss_pred CCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEE
Q 004197 343 DCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFK 422 (769)
Q Consensus 343 ~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 422 (769)
+|. +..+..+.+..++.|+.|+++.|.+..... ..+..-.++++|++++|.++.+....
T Consensus 134 ~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~-----------~sfp~~~ni~~L~La~N~It~l~~~~--------- 192 (873)
T KOG4194|consen 134 HNL-ISSVTSEELSALPALRSLDLSRNLISEIPK-----------PSFPAKVNIKKLNLASNRITTLETGH--------- 192 (873)
T ss_pred ccc-cccccHHHHHhHhhhhhhhhhhchhhcccC-----------CCCCCCCCceEEeecccccccccccc---------
Confidence 865 666666557788888888888877662221 44555567788888877766543321
Q ss_pred EEEcCCccccccccccccccccccccccCcccccceEEeecccccccccc-ccccccccEEEecccCCcccccccCCCCC
Q 004197 423 ISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDLDTNG 501 (769)
Q Consensus 423 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 501 (769)
...+.+|-.|+|+.+.++..+.. +..+++|++|++..+..- ...++.+.+
T Consensus 193 ---------------------------F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir--ive~ltFqg 243 (873)
T KOG4194|consen 193 ---------------------------FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR--IVEGLTFQG 243 (873)
T ss_pred ---------------------------ccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee--eehhhhhcC
Confidence 11233455555555554444433 445555665555443311 111122445
Q ss_pred CCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHh
Q 004197 502 LPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTA 581 (769)
Q Consensus 502 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 581 (769)
+|+|+.|.+..+. +..+..+. +..+.++++|+++.+ .+..+.. .++
T Consensus 244 L~Sl~nlklqrN~------------------------------I~kL~DG~--Fy~l~kme~l~L~~N-~l~~vn~-g~l 289 (873)
T KOG4194|consen 244 LPSLQNLKLQRND------------------------------ISKLDDGA--FYGLEKMEHLNLETN-RLQAVNE-GWL 289 (873)
T ss_pred chhhhhhhhhhcC------------------------------cccccCcc--eeeecccceeecccc-hhhhhhc-ccc
Confidence 5666666655442 11111110 123455566666543 3443322 244
Q ss_pred hcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecch
Q 004197 582 KCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLA 661 (769)
Q Consensus 582 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 661 (769)
-.+++|+.|+++.+. +..+-.. .-...++|++|+|++|+++.+ .++.|..+..|++|+++. +.++++ ..
T Consensus 290 fgLt~L~~L~lS~Na-I~rih~d---~WsftqkL~~LdLs~N~i~~l-----~~~sf~~L~~Le~LnLs~-Nsi~~l-~e 358 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNA-IQRIHID---SWSFTQKLKELDLSSNRITRL-----DEGSFRVLSQLEELNLSH-NSIDHL-AE 358 (873)
T ss_pred cccchhhhhccchhh-hheeecc---hhhhcccceeEeccccccccC-----ChhHHHHHHHhhhhcccc-cchHHH-Hh
Confidence 567777777777643 3333221 222457888888888888776 455667788888888888 467776 35
Q ss_pred hhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCCCccccCCCcceEEEecCCCcee
Q 004197 662 SMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCDKLKI 741 (769)
Q Consensus 662 ~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~ 741 (769)
..+.++.+|++|+++++ .+.-.+.+... ....+|+|++|.+.| ++|++++...+. .+++|+.|++.+.+--..
T Consensus 359 ~af~~lssL~~LdLr~N-~ls~~IEDaa~----~f~gl~~LrkL~l~g-Nqlk~I~krAfs-gl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSN-ELSWCIEDAAV----AFNGLPSLRKLRLTG-NQLKSIPKRAFS-GLEALEHLDLGDNAIASI 431 (873)
T ss_pred hHHHHhhhhhhhcCcCC-eEEEEEecchh----hhccchhhhheeecC-ceeeecchhhhc-cCcccceecCCCCcceee
Confidence 56778888999988876 44443332111 134588899999988 688888875433 558889999888764444
Q ss_pred eccCCCCcccccccCCCC
Q 004197 742 FGADLSQNNEVDQLGIPA 759 (769)
Q Consensus 742 l~~~~~~~~~l~~l~i~~ 759 (769)
-|..+..+ +|+++.+..
T Consensus 432 q~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 432 QPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cccccccc-hhhhhhhcc
Confidence 45555555 888876643
No 7
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.89 E-value=7.7e-24 Score=239.41 Aligned_cols=368 Identities=17% Similarity=0.176 Sum_probs=240.2
Q ss_pred chhhHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHcchhhHHHHHHHHHHHHHHHHH-H-----
Q 004197 16 LAPPIERRLGYLRNYNANFRNLKAEIDKLKDESRSIQHRVSE------AERKGEKIEEKVKKWLVSANNTIEQ-A----- 83 (769)
Q Consensus 16 l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~------a~~~~~~~~~~~~~W~~~~~~~~~~-~----- 83 (769)
-...|..+.+|.+|.++++....++...+.+....|.+.|.| +.+..++...++++|.+....+... +
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~ 392 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSG 392 (889)
T ss_pred cccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCc
Confidence 346788899999999999888666656688899999999998 2334455567888999988766443 2
Q ss_pred -Hhhh--------hhhhhcccccccccCCCcchhcccchhhhhhhhHHHHHHHhhcCCccEEEEEccCCCchHHHHHHHH
Q 004197 84 -AKFI--------DDEVTTNKRCLMGLCPNLKTRYRLSKKAETEEKGLAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFA 154 (769)
Q Consensus 84 -ed~~--------d~~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~ 154 (769)
++.+ |+++.++|.||+| |+.||+||+|.++.++. .|++|||++.. -+..++-..|-+.+-+.|.
T Consensus 393 ~~~~i~~iLklSyd~L~~~lK~CFLy-calFPED~~I~~e~Li~---yWiaEGfi~~~---~~~~~~~d~G~~~i~~LV~ 465 (889)
T KOG4658|consen 393 MEESILPILKLSYDNLPEELKSCFLY-CALFPEDYEIKKEKLIE---YWIAEGFIDPL---DGGETAEDVGYDYIEELVR 465 (889)
T ss_pred hhhhhHHhhhccHhhhhHHHHHHHHh-hccCCcccccchHHHHH---HHHhccCcCcc---ccccchhcchHHHHHHHHH
Confidence 2222 6678889999999 99999999999999999 99999999651 0122333466666666666
Q ss_pred HHhhhhcCC----CeE----------EEEEc--CC-CceEehhH--HHHHHHHHHhhccceEEEEeCCcccccCCccccC
Q 004197 155 RRAIEDKLC----DMV----------VFSED--GS-NKFFSMHD--VVRDVAISIAFRDKIAFAVRNKDVWKWPDADALK 215 (769)
Q Consensus 155 ~~~~~~~~F----~~~----------~~~~~--~~-~~~~~~hd--l~~dl~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 215 (769)
..+...... +.+ .|+.. +. ...+.+.+ -.++......-...++....+......+.....+
T Consensus 466 ~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~ 545 (889)
T KOG4658|consen 466 ASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENP 545 (889)
T ss_pred HHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCC
Confidence 665443221 111 11111 11 11122221 1222222222233344555555555555555556
Q ss_pred cceEEEeecCC--CCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCcc
Q 004197 216 KYFAIFLKDSI--INDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLR 290 (769)
Q Consensus 216 ~lr~L~l~~~~--~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~ 290 (769)
++++|-+..|. +..++. ...++.|| |+++++.....+| .. ++.+-+||||+++++.+..+|..+++|..|.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP---~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP---SS-IGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC---hH-HhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 89999999986 566654 33799999 9999988888999 44 5899999999999999999999999999999
Q ss_pred EEEecccc-ccccChhhhhccCCCcEEEeecCCCcc---cchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEc
Q 004197 291 TLCLDQSI-LGDIDIAIIGKLGNLEILSFWRSDIVH---LPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYM 366 (769)
Q Consensus 291 ~L~L~~~~-l~~l~p~~i~~L~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l 366 (769)
||++..+. +..+ |..+..|++||+|.+....... .-..+.++.+|+.+....+. . .+-.. +..++.|..+..
T Consensus 622 ~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s-~-~~~e~-l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 622 YLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS-V-LLLED-LLGMTRLRSLLQ 697 (889)
T ss_pred eeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch-h-HhHhh-hhhhHHHHHHhH
Confidence 99999998 5555 6777789999999998875321 22334555555555544332 1 11111 333444433221
Q ss_pred cCCccccceeccccccccCCchhhcCCCCccEEEEEeeCC
Q 004197 367 GNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKND 406 (769)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 406 (769)
.-.. . ..........+..+.+|+.|.+..+..
T Consensus 698 ~l~~-~-------~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 698 SLSI-E-------GCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred hhhh-c-------ccccceeecccccccCcceEEEEcCCC
Confidence 1000 0 001122335666677777777766553
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.1e-23 Score=211.02 Aligned_cols=374 Identities=20% Similarity=0.194 Sum_probs=259.5
Q ss_pred cCcceEEEeecCCCCCCCCcc----CCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCC
Q 004197 214 LKKYFAIFLKDSIINDIPEVL----ESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVN 288 (769)
Q Consensus 214 ~~~lr~L~l~~~~~~~l~~~~----~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~ 288 (769)
+-+.+-|+.+.+.++.+.... -.+..+ |++.++.. ..+. ...|.++++|+.+.+.+|.++.+|...+...|
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl-~~id---~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sgh 126 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKL-SHID---FEFFYNLPNLQEVNLNKNELTRIPRFGHESGH 126 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeecccccc-ccCc---HHHHhcCCcceeeeeccchhhhcccccccccc
Confidence 345566666766665543211 123344 55555443 2333 56678999999999999999999988888889
Q ss_pred ccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEcc
Q 004197 289 LRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMG 367 (769)
Q Consensus 289 L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~ 367 (769)
|+.|+|.+|.|.++..+.+..++.|+.||++.|.++++|. ++..-.++.+|++++|. ++.+..+-+..+.+|-+|.++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecc
Confidence 9999999999999877889999999999999999998874 46666789999999976 888877768889999999999
Q ss_pred CCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcCCccccccccccccccccccc
Q 004197 368 NCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHF 447 (769)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~ 447 (769)
.|.++.-.+ ..++++++|+.|++..|...... ++.
T Consensus 206 rNrittLp~-----------r~Fk~L~~L~~LdLnrN~irive-~lt--------------------------------- 240 (873)
T KOG4194|consen 206 RNRITTLPQ-----------RSFKRLPKLESLDLNRNRIRIVE-GLT--------------------------------- 240 (873)
T ss_pred cCcccccCH-----------HHhhhcchhhhhhccccceeeeh-hhh---------------------------------
Confidence 998874443 77888999999999877643221 100
Q ss_pred cccCcccccceEEeecccccccccc-ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCcccc
Q 004197 448 LINNNRESLRELKLKLDFTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMV 526 (769)
Q Consensus 448 ~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 526 (769)
...+++++.+++..+.+...... +-.+.++++|++..+.....-..+ +-+++.|+.|+++.+.
T Consensus 241 --FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~--lfgLt~L~~L~lS~Na------------ 304 (873)
T KOG4194|consen 241 --FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW--LFGLTSLEQLDLSYNA------------ 304 (873)
T ss_pred --hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc--ccccchhhhhccchhh------------
Confidence 23445566666666554444444 455666666666554432211111 3345566666665542
Q ss_pred ccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCC
Q 004197 527 ACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGG 606 (769)
Q Consensus 527 ~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 606 (769)
+..+... ....+++|+.|+++.+ .++.+++ +.+..+..|++|.++++ ++..+-.
T Consensus 305 ------------------I~rih~d--~WsftqkL~~LdLs~N-~i~~l~~-~sf~~L~~Le~LnLs~N-si~~l~e--- 358 (873)
T KOG4194|consen 305 ------------------IQRIHID--SWSFTQKLKELDLSSN-RITRLDE-GSFRVLSQLEELNLSHN-SIDHLAE--- 358 (873)
T ss_pred ------------------hheeecc--hhhhcccceeEecccc-ccccCCh-hHHHHHHHhhhhccccc-chHHHHh---
Confidence 1111111 1224678888888875 5666654 46777889999999884 3444332
Q ss_pred cccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEcccccccee
Q 004197 607 EADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEI 684 (769)
Q Consensus 607 ~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i 684 (769)
+.+..+.+|++|+|++|.+.-.-++.. ..+..+++|+.|.+.+ +++++++ ...+.++++|++|++.++ -+.+|
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa--~~f~gl~~LrkL~l~g-Nqlk~I~-krAfsgl~~LE~LdL~~N-aiaSI 431 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAA--VAFNGLPSLRKLRLTG-NQLKSIP-KRAFSGLEALEHLDLGDN-AIASI 431 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecch--hhhccchhhhheeecC-ceeeecc-hhhhccCcccceecCCCC-cceee
Confidence 245568899999999997765444432 5667799999999999 6899884 566889999999999987 45554
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=1.4e-25 Score=216.90 Aligned_cols=221 Identities=25% Similarity=0.284 Sum_probs=112.2
Q ss_pred hcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEE
Q 004197 261 KRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLD 340 (769)
Q Consensus 261 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 340 (769)
+.+..+..|+.++|.+..+|..++.+..|+.|+.+++.+.++ |++|+.+..|+.|+..+|.+.++|.+++++.+|..|+
T Consensus 88 g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el-~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~ 166 (565)
T KOG0472|consen 88 GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKEL-PDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLD 166 (565)
T ss_pred HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeec-CchHHHHhhhhhhhccccccccCchHHHHHHHHHHhh
Confidence 344444444444444444444444444555555555444444 4444544455555544444445554444444444444
Q ss_pred ccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccE
Q 004197 341 LTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLER 420 (769)
Q Consensus 341 l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 420 (769)
+.++. ++..|++.+ +++.|++|+...|... .+| .+++.+..|..|++..|....+|+.-..+.|..
T Consensus 167 ~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP-----------~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~E 232 (565)
T KOG0472|consen 167 LEGNK-LKALPENHI-AMKRLKHLDCNSNLLE-TLP-----------PELGGLESLELLYLRRNKIRFLPEFPGCSLLKE 232 (565)
T ss_pred ccccc-hhhCCHHHH-HHHHHHhcccchhhhh-cCC-----------hhhcchhhhHHHHhhhcccccCCCCCccHHHHH
Confidence 44433 444444422 2444444444333322 222 344444444444444444444443222233333
Q ss_pred EEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCCcccccccCCCC
Q 004197 421 FKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDTN 500 (769)
Q Consensus 421 l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 500 (769)
+++. .+++.-+|.. ....++++..|+++.+..+..+.++..+++|++|++++..... .+.. +|
T Consensus 233 lh~g---~N~i~~lpae-----------~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~s--Lg 295 (565)
T KOG0472|consen 233 LHVG---ENQIEMLPAE-----------HLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYS--LG 295 (565)
T ss_pred HHhc---ccHHHhhHHH-----------HhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCcc--cc
Confidence 2211 1122223311 1335667777888877777777777777888888888765433 3322 67
Q ss_pred CCCCCceEEEecCC
Q 004197 501 GLPQLKLLWVQNNP 514 (769)
Q Consensus 501 ~l~~L~~L~l~~~~ 514 (769)
++ +|+.|.+.++|
T Consensus 296 nl-hL~~L~leGNP 308 (565)
T KOG0472|consen 296 NL-HLKFLALEGNP 308 (565)
T ss_pred cc-eeeehhhcCCc
Confidence 77 88888888887
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=5e-24 Score=216.84 Aligned_cols=137 Identities=18% Similarity=0.279 Sum_probs=70.9
Q ss_pred hcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCc--ccchhhccCCCCcE
Q 004197 261 KRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIV--HLPKALGQLTKLRL 338 (769)
Q Consensus 261 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~ 338 (769)
..+..++.|.|..+.+..+|..++.|.+|+.|.+.+|.+..+ ...++.|+.|+.++++.|+++ .+|..|-+|..|..
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence 455555555555555555555555555555555555555555 455555555555555555444 45555555555555
Q ss_pred EEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCc
Q 004197 339 LDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPE 411 (769)
Q Consensus 339 L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 411 (769)
|++++|. ++.+|.+ +..-+++-.|++++|.+. .+|+ .-+-+++.|-.|+++.|....+|+
T Consensus 108 lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~Ie-tIPn----------~lfinLtDLLfLDLS~NrLe~LPP 167 (1255)
T KOG0444|consen 108 LDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIE-TIPN----------SLFINLTDLLFLDLSNNRLEMLPP 167 (1255)
T ss_pred eecchhh-hhhcchh-hhhhcCcEEEEcccCccc-cCCc----------hHHHhhHhHhhhccccchhhhcCH
Confidence 5555544 5555555 555555555555555443 1221 233444445555555554444443
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=9.7e-24 Score=214.77 Aligned_cols=139 Identities=20% Similarity=0.277 Sum_probs=122.5
Q ss_pred cCCcccEEEecCcccC--CCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEE
Q 004197 262 RTKKLRVLDLTRMRLL--SLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLL 339 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 339 (769)
-++-.|-.|+++|.++ .+|..+..+++++.|.|..+.+..+ |+.++.|++|++|.+++|++.++...+..|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 3556788899999998 6899999999999999999999999 999999999999999999999999999999999999
Q ss_pred EccCCc-CccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccc
Q 004197 340 DLTDCF-HLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFF 414 (769)
Q Consensus 340 ~l~~~~-~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~ 414 (769)
.+..|. +-..+|.+ +-+|..|..|+++.|... .+| ..|..-.++-.|+++.|.+..+|..++
T Consensus 84 ~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~-EvP-----------~~LE~AKn~iVLNLS~N~IetIPn~lf 146 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLR-EVP-----------TNLEYAKNSIVLNLSYNNIETIPNSLF 146 (1255)
T ss_pred hhhccccccCCCCch-hcccccceeeecchhhhh-hcc-----------hhhhhhcCcEEEEcccCccccCCchHH
Confidence 988865 22457888 889999999999999876 334 788888999999999999988887654
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=1e-22 Score=217.26 Aligned_cols=423 Identities=19% Similarity=0.206 Sum_probs=237.3
Q ss_pred hHhhhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCC
Q 004197 257 ENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKL 336 (769)
Q Consensus 257 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L 336 (769)
-++..+.-+|+.||+++|.+..+|..|..+.+|+.|+++.|.|..+ |.+++++.+|++|.|.+|.+..+|.++..+++|
T Consensus 38 l~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~v-p~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl 116 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSV-PSSCSNMRNLQYLNLKNNRLQSLPASISELKNL 116 (1081)
T ss_pred hHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhC-chhhhhhhcchhheeccchhhcCchhHHhhhcc
Confidence 3455666669999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred cEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCC-CCCCccccc
Q 004197 337 RLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKND-IILPEGFFA 415 (769)
Q Consensus 337 ~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~-~~~~~~~~~ 415 (769)
++|++++|. +..+|.- +..++.+..+..++|... ..++... .+.+++..+.. ..++.++
T Consensus 117 ~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~~~---------------~~lg~~~-ik~~~l~~n~l~~~~~~~i-- 176 (1081)
T KOG0618|consen 117 QYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNEKI---------------QRLGQTS-IKKLDLRLNVLGGSFLIDI-- 176 (1081)
T ss_pred cccccchhc-cCCCchh-HHhhhHHHHHhhhcchhh---------------hhhcccc-chhhhhhhhhcccchhcch--
Confidence 999999976 6777776 778888888887776221 2222222 34444433321 1111111
Q ss_pred ccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCCcccccc
Q 004197 416 RKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLF 495 (769)
Q Consensus 416 ~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 495 (769)
.+++. .+........ .+ ....+.+++.+....+..... .-.-++|+.|+...+...+...
T Consensus 177 ~~l~~-~ldLr~N~~~-~~--------------dls~~~~l~~l~c~rn~ls~l---~~~g~~l~~L~a~~n~l~~~~~- 236 (1081)
T KOG0618|consen 177 YNLTH-QLDLRYNEME-VL--------------DLSNLANLEVLHCERNQLSEL---EISGPSLTALYADHNPLTTLDV- 236 (1081)
T ss_pred hhhhe-eeecccchhh-hh--------------hhhhccchhhhhhhhcccceE---EecCcchheeeeccCcceeecc-
Confidence 01111 1111111000 00 011222233332222110000 0112456666666555442111
Q ss_pred cCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccc
Q 004197 496 DLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNI 575 (769)
Q Consensus 496 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 575 (769)
-..-.+|.+++++.... ..+ . .....+++|+.+...+- ++..++.. .....+|+.|.+..| .++.+
T Consensus 237 ---~p~p~nl~~~dis~n~l-~~l---p--~wi~~~~nle~l~~n~N-~l~~lp~r---i~~~~~L~~l~~~~n-el~yi 302 (1081)
T KOG0618|consen 237 ---HPVPLNLQYLDISHNNL-SNL---P--EWIGACANLEALNANHN-RLVALPLR---ISRITSLVSLSAAYN-ELEYI 302 (1081)
T ss_pred ---ccccccceeeecchhhh-hcc---h--HHHHhcccceEecccch-hHHhhHHH---HhhhhhHHHHHhhhh-hhhhC
Confidence 11223566666665421 111 0 12334556666655431 22222211 112333444444333 33444
Q ss_pred cchHHhhcCCCCcEEEEccCc------------------------hhhhhhhcCCcccccCCcccccccccccceeccCC
Q 004197 576 FWLSTAKCLPRLERVAVINCS------------------------KMKEIFAIGGEADVVLPNLEALEISEINVDKIWHY 631 (769)
Q Consensus 576 ~~~~~~~~l~~L~~L~i~~c~------------------------~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~ 631 (769)
|+ ....+.+|+.|++.... .+...+.. +...++.|+.|++.+|.+++-
T Consensus 303 p~--~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~---~e~~~~~Lq~LylanN~Ltd~--- 374 (1081)
T KOG0618|consen 303 PP--FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY---EENNHAALQELYLANNHLTDS--- 374 (1081)
T ss_pred CC--cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc---cchhhHHHHHHHHhcCccccc---
Confidence 33 22334555555554421 11111110 233567789999999977763
Q ss_pred CCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCc
Q 004197 632 NHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLP 711 (769)
Q Consensus 632 ~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~ 711 (769)
..+.+.++.+|+.|++++ +.|.++ |.+.+.+++.|++|+++++ +|+.++.. ...+++|++|.-.+ +
T Consensus 375 --c~p~l~~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSGN-kL~~Lp~t--------va~~~~L~tL~ahs-N 440 (1081)
T KOG0618|consen 375 --CFPVLVNFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSGN-KLTTLPDT--------VANLGRLHTLRAHS-N 440 (1081)
T ss_pred --chhhhccccceeeeeecc-cccccC-CHHHHhchHHhHHHhcccc-hhhhhhHH--------HHhhhhhHHHhhcC-C
Confidence 224556889999999999 568876 5678899999999999998 78877521 23345555555554 3
Q ss_pred ccccccCCCccccCCCcceEEEecCCCceeeccCCCCc-ccccccCCCCC
Q 004197 712 ELRCLYPGMHTLEWPALKFLVVSGCDKLKIFGADLSQN-NEVDQLGIPAQ 760 (769)
Q Consensus 712 ~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~l~~~~~~~-~~l~~l~i~~~ 760 (769)
.+.++| +...+ +.|+.+|++ |.+|+..-...... +.|+.+|+.|+
T Consensus 441 ~l~~fP-e~~~l--~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 441 QLLSFP-ELAQL--PQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred ceeech-hhhhc--CcceEEecc-cchhhhhhhhhhCCCcccceeeccCC
Confidence 455555 23322 555555553 33444433333222 55555555554
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=2.4e-24 Score=208.40 Aligned_cols=236 Identities=23% Similarity=0.261 Sum_probs=170.9
Q ss_pred EEEeCCcccccCC-ccccCcceEEEeecCCCCCCCCcc-CCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCc
Q 004197 198 FAVRNKDVWKWPD-ADALKKYFAIFLKDSIINDIPEVL-ESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRM 274 (769)
Q Consensus 198 ~~~~~~~~~~~~~-~~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 274 (769)
+.+.++.+...|. ......+.++.+++|.+..+|... ...+++ +.+..+.. ..+| .+ ++.+..|..|+..+|
T Consensus 73 l~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~-~el~---~~-i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 73 LNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL-KELP---DS-IGRLLDLEDLDATNN 147 (565)
T ss_pred EEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce-eecC---ch-HHHHhhhhhhhcccc
Confidence 3344555555543 244556677778888877777543 677777 77666544 3444 34 457788888888888
Q ss_pred ccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhh
Q 004197 275 RLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDV 354 (769)
Q Consensus 275 ~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~ 354 (769)
++.++|..++.+..|..|++.+|.++++ |+..-+++.|++||...|.+..+|..++.|.+|..|++..|. +..+|.
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe-- 223 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPE-- 223 (565)
T ss_pred ccccCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCC--
Confidence 8888888888888888888888888888 444444888888888888888888888888888888888865 777884
Q ss_pred hcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccc-cccccEEEEEEcCCccccc
Q 004197 355 ISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFF-ARKLERFKISIGNESFMAS 433 (769)
Q Consensus 355 ~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~l~i~~~~~~~~~~ 433 (769)
|+.+..|.+|+++.|++..-.. +.+..++++..|++..|....+|..+. +++|+.|.++..+ +..
T Consensus 224 f~gcs~L~Elh~g~N~i~~lpa-----------e~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~---is~ 289 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIEMLPA-----------EHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND---ISS 289 (565)
T ss_pred CCccHHHHHHHhcccHHHhhHH-----------HHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc---ccc
Confidence 8888888888888877763322 456688999999999999999999887 6778887765443 455
Q ss_pred cccccccccccccccccCcccccceEEeeccccccc
Q 004197 434 LPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVR 469 (769)
Q Consensus 434 l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 469 (769)
+|+. .+.+ +|+.|.+.+++...+
T Consensus 290 Lp~s------------Lgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 290 LPYS------------LGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred CCcc------------cccc-eeeehhhcCCchHHH
Confidence 6542 3444 666666676664443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=1.4e-21 Score=208.87 Aligned_cols=385 Identities=19% Similarity=0.165 Sum_probs=206.3
Q ss_pred hhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEE
Q 004197 260 FKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLL 339 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 339 (769)
+..+.+|+.|.++.|.|.++|.+++++.+|+||+|.+|.+..+ |.++..+++|++||+++|.+..+|..+..++.+..+
T Consensus 64 it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~l-P~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 64 ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSL-PASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcC-chhHHhhhcccccccchhccCCCchhHHhhhHHHHH
Confidence 3456667777777777777776667777777777777777777 677777777777777777666666666555555555
Q ss_pred EccCCcCcc-------------------ccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEE
Q 004197 340 DLTDCFHLK-------------------VIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIE 400 (769)
Q Consensus 340 ~l~~~~~l~-------------------~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 400 (769)
..++|..+. .++.+ +..++. .|++++|.+. ...+..+.+|+.+.
T Consensus 143 ~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~--------------~~dls~~~~l~~l~ 205 (1081)
T KOG0618|consen 143 AASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME--------------VLDLSNLANLEVLH 205 (1081)
T ss_pred hhhcchhhhhhccccchhhhhhhhhcccchhcc-hhhhhe--eeecccchhh--------------hhhhhhccchhhhh
Confidence 555542222 22222 333333 3555554433 12334444444444
Q ss_pred EEeeCCCCCCcccccccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeecccccccccccccccccc
Q 004197 401 INIKNDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVE 480 (769)
Q Consensus 401 l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~ 480 (769)
...+....+.- .-.+++.+......- . .........++++++++.+.....+.++..+.+|+
T Consensus 206 c~rn~ls~l~~--~g~~l~~L~a~~n~l---~-------------~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 206 CERNQLSELEI--SGPSLTALYADHNPL---T-------------TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLE 267 (1081)
T ss_pred hhhcccceEEe--cCcchheeeeccCcc---e-------------eeccccccccceeeecchhhhhcchHHHHhcccce
Confidence 33333221100 011111111110000 0 00002233445555555544444442245555555
Q ss_pred EEEecccCCcc----------------------cccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceee
Q 004197 481 YLWLDKLQGVK----------------------NVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLT 538 (769)
Q Consensus 481 ~L~l~~~~~~~----------------------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~ 538 (769)
.|....+..+. ..++. .+++.+|++|++..+. +..+.+. +....-.+|..|.
T Consensus 268 ~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~--le~~~sL~tLdL~~N~-L~~lp~~---~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 268 ALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPF--LEGLKSLRTLDLQSNN-LPSLPDN---FLAVLNASLNTLN 341 (1081)
T ss_pred EecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCc--ccccceeeeeeehhcc-ccccchH---HHhhhhHHHHHHh
Confidence 55444433221 12211 4456677777776552 1111000 0000000122222
Q ss_pred ccccccccccccccccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCccccc
Q 004197 539 LHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEAL 618 (769)
Q Consensus 539 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L 618 (769)
.+. ..+...+. .....++.|+.|++.++.--...+| .+.++.+|+.|+++++ .+.++|... ...++.|++|
T Consensus 342 ~s~-n~l~~lp~--~~e~~~~~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyN-rL~~fpas~---~~kle~LeeL 412 (1081)
T KOG0618|consen 342 VSS-NKLSTLPS--YEENNHAALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYN-RLNSFPASK---LRKLEELEEL 412 (1081)
T ss_pred hhh-cccccccc--ccchhhHHHHHHHHhcCcccccchh--hhccccceeeeeeccc-ccccCCHHH---HhchHHhHHH
Confidence 221 11222221 1244678889999988765555544 6688899999999984 455555432 3467889999
Q ss_pred ccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeee
Q 004197 619 EISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFV 698 (769)
Q Consensus 619 ~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~ 698 (769)
+|++|+++.++ ..+..++.|++|...+ +.+... | .+.+++.|+.+|++ |++|+.+...+..+.
T Consensus 413 ~LSGNkL~~Lp------~tva~~~~L~tL~ahs-N~l~~f-P--e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~------ 475 (1081)
T KOG0618|consen 413 NLSGNKLTTLP------DTVANLGRLHTLRAHS-NQLLSF-P--ELAQLPQLKVLDLS-CNNLSEVTLPEALPS------ 475 (1081)
T ss_pred hcccchhhhhh------HHHHhhhhhHHHhhcC-Cceeec-h--hhhhcCcceEEecc-cchhhhhhhhhhCCC------
Confidence 99999998874 3344788888887766 355554 2 56788999999998 558877644333322
Q ss_pred ecccCccccccCccc
Q 004197 699 FQRVTTLTLQDLPEL 713 (769)
Q Consensus 699 l~~L~~L~l~~c~~L 713 (769)
|+|++|+++|...+
T Consensus 476 -p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 476 -PNLKYLDLSGNTRL 489 (1081)
T ss_pred -cccceeeccCCccc
Confidence 67999999987653
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.1e-17 Score=141.73 Aligned_cols=140 Identities=26% Similarity=0.358 Sum_probs=126.4
Q ss_pred hhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCc--ccchhhccCCCCc
Q 004197 260 FKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIV--HLPKALGQLTKLR 337 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~ 337 (769)
+..+++|++|++++|+++++|.+|+.++.||.|++.-|.+..+ |..||.++.|+.||+.+|++. .+|..+..|+.|+
T Consensus 52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l-prgfgs~p~levldltynnl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLR 130 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC-ccccCCCchhhhhhccccccccccCCcchhHHHHHH
Confidence 3689999999999999999999999999999999999999999 999999999999999999776 7899999999999
Q ss_pred EEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccc
Q 004197 338 LLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFF 414 (769)
Q Consensus 338 ~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~ 414 (769)
.|+++.|. ++.+|++ ++++++||.|.+.+|... .+| .+++.++.|+.|+|.++..+.+|+.+.
T Consensus 131 alyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll-~lp-----------keig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 131 ALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL-SLP-----------KEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HHHhcCCC-cccCChh-hhhhcceeEEeeccCchh-hCc-----------HHHHHHHHHHHHhcccceeeecChhhh
Confidence 99999976 8888988 999999999999888765 334 789999999999999999888888743
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=3.2e-13 Score=150.25 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=81.8
Q ss_pred CcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccC
Q 004197 264 KKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTD 343 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 343 (769)
..-.+|+++++.++.+|..+. .+|+.|++.+|.++.+ |. .+++|++|++++|.++.+|.. .++|+.|++.+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 446678888888888887775 3788888888888888 54 257888888888888888753 46788888888
Q ss_pred CcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCC
Q 004197 344 CFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILP 410 (769)
Q Consensus 344 ~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 410 (769)
|. +..+|.. .++|+.|++++|.+.. ++ ...++|+.|+++.|....+|
T Consensus 272 N~-L~~Lp~l----p~~L~~L~Ls~N~Lt~-LP--------------~~p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 272 NP-LTHLPAL----PSGLCKLWIFGNQLTS-LP--------------VLPPGLQELSVSDNQLASLP 318 (788)
T ss_pred Cc-hhhhhhc----hhhcCEEECcCCcccc-cc--------------ccccccceeECCCCccccCC
Confidence 75 6666642 3567778887776651 11 12356777777776554443
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.45 E-value=7.5e-15 Score=143.02 Aligned_cols=144 Identities=26% Similarity=0.351 Sum_probs=95.6
Q ss_pred EEEEeCCcccccCCccccCcceEEEeecCCCCCCCCccCCCCcEEEecCCCCccccCCcchHhhhcCCcccEEEecCccc
Q 004197 197 AFAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPEVLESPQLEFLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRL 276 (769)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lrl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i 276 (769)
.+...+.++.++|. +.++....+.+..|.+..+| ..+|+.+++||.|||++|.|
T Consensus 50 ~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP-------------------------~~aF~~l~~LRrLdLS~N~I 103 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIP-------------------------PGAFKTLHRLRRLDLSKNNI 103 (498)
T ss_pred eEEccCCCcccCcc-cCCCcceEEEeccCCcccCC-------------------------hhhccchhhhceecccccch
Confidence 34445567777775 67778888888888877666 55677777777777777777
Q ss_pred CCC-CccccccCCccEEEecc-ccccccChhhhhccCCCcEEEeecCCCcccc-hhhccCCCCcEEEccCCcCccccChh
Q 004197 277 LSL-PSSIDLLVNLRTLCLDQ-SILGDIDIAIIGKLGNLEILSFWRSDIVHLP-KALGQLTKLRLLDLTDCFHLKVIAPD 353 (769)
Q Consensus 277 ~~l-p~~i~~l~~L~~L~L~~-~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~ 353 (769)
+.+ |+.|..+.+|-.|-+.+ |+|++++...|++|..||.|.+.-|.+..++ ..+..|++|..|.+..|. +..++.+
T Consensus 104 s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~ 182 (498)
T KOG4237|consen 104 SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKG 182 (498)
T ss_pred hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccc
Confidence 765 66677777766665555 5577775556777777777777766666544 346667777766666644 5556655
Q ss_pred hhcCCCCccEEEcc
Q 004197 354 VISSLIRLEELYMG 367 (769)
Q Consensus 354 ~~~~L~~L~~L~l~ 367 (769)
.+..+.+++++.+.
T Consensus 183 tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 183 TFQGLAAIKTLHLA 196 (498)
T ss_pred cccchhccchHhhh
Confidence 45566666665543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=1.3e-12 Score=146.62 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=63.8
Q ss_pred cccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCC
Q 004197 265 KLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDC 344 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 344 (769)
+...|+++++.++.+|..+. .+|+.|++++|.++.+ |..+. .+|++|++++|.++.+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 45667777777777776553 4677777777777777 55543 477777777777777776543 46777777776
Q ss_pred cCccccChhhhcCCCCccEEEccCCccc
Q 004197 345 FHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 345 ~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
. +..+|.. +. .+|+.|++++|.+.
T Consensus 252 ~-L~~LP~~-l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 252 R-ITELPER-LP--SALQSLDLFHNKIS 275 (754)
T ss_pred c-cCcCChh-Hh--CCCCEEECcCCccC
Confidence 5 5566655 32 46677777666554
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=6.2e-12 Score=140.14 Aligned_cols=186 Identities=17% Similarity=0.145 Sum_probs=114.3
Q ss_pred ceEEEEeCCcccccCCccccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecC
Q 004197 195 KIAFAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTR 273 (769)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~ 273 (769)
...+.+.+..++.+|. ..+.+++.|++..|.+..+|.. .++|+ |.+.++. ...+| . ..++|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~-LtsLP---~----lp~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQ-LTSLP---V----LPPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCc-cCccc---C----cccccceeeccC
Confidence 3456666777777775 4556788888888888777753 46777 7776653 33555 1 235677777777
Q ss_pred cccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChh
Q 004197 274 MRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPD 353 (769)
Q Consensus 274 ~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~ 353 (769)
|.++.+|... ..|+.|++++|.++.+ |. .+++|++|++++|.+..+|.. ..+|+.|++.+|. ++.+|..
T Consensus 272 N~L~~Lp~lp---~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l 340 (788)
T PRK15387 272 NPLTHLPALP---SGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPTL 340 (788)
T ss_pred Cchhhhhhch---hhcCEEECcCCccccc-cc---cccccceeECCCCccccCCCC---cccccccccccCc-ccccccc
Confidence 7777666432 4566777777777777 44 245677777777777776642 2346666676654 5555531
Q ss_pred hhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEE
Q 004197 354 VISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKI 423 (769)
Q Consensus 354 ~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i 423 (769)
..+|+.|++++|.+.. +| . ...+|+.|+++.|....+|.. ..+|+.|.+
T Consensus 341 ----p~~Lq~LdLS~N~Ls~-LP------------~--lp~~L~~L~Ls~N~L~~LP~l--~~~L~~LdL 389 (788)
T PRK15387 341 ----PSGLQELSVSDNQLAS-LP------------T--LPSELYKLWAYNNRLTSLPAL--PSGLKELIV 389 (788)
T ss_pred ----ccccceEecCCCccCC-CC------------C--CCcccceehhhccccccCccc--ccccceEEe
Confidence 2467777777776651 11 0 123456666666665555543 234555544
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.2e-14 Score=125.08 Aligned_cols=154 Identities=25% Similarity=0.293 Sum_probs=114.6
Q ss_pred cccCcceEEEeecCCCCCCCCcc-CCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCc
Q 004197 212 DALKKYFAIFLKDSIINDIPEVL-ESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNL 289 (769)
Q Consensus 212 ~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L 289 (769)
-...++++|.+++|.+..+|... ++.+|. +.++++ ...++| .. ++.+++||.|+++-|.+..+|..||.++-|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp---~~-issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELP---TS-ISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcC---hh-hhhchhhhheecchhhhhcCccccCCCchh
Confidence 34566777888888777766443 777777 666544 345566 33 477888888888888777788888888888
Q ss_pred cEEEecccccc--ccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEcc
Q 004197 290 RTLCLDQSILG--DIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMG 367 (769)
Q Consensus 290 ~~L~L~~~~l~--~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~ 367 (769)
+.|||.+|.+. .+ |..|-.++.|+.|.++.|.+..+|..++++++||.|.+..|. +-.+|++ ++.++.|+.|.+.
T Consensus 105 evldltynnl~e~~l-pgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSL-PGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccccccccccC-CcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcc
Confidence 88888888765 56 777777888888888888888888888888888888887766 6667877 7888888888887
Q ss_pred CCcccc
Q 004197 368 NCSIEW 373 (769)
Q Consensus 368 ~~~~~~ 373 (769)
+|....
T Consensus 182 gnrl~v 187 (264)
T KOG0617|consen 182 GNRLTV 187 (264)
T ss_pred cceeee
Confidence 776653
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=5.3e-12 Score=141.68 Aligned_cols=152 Identities=17% Similarity=0.270 Sum_probs=64.7
Q ss_pred EeCCcccccCCccccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCC
Q 004197 200 VRNKDVWKWPDADALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLS 278 (769)
Q Consensus 200 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~ 278 (769)
..+..+..+|. .+++.++.|++++|.+..+|... .++|+ |.+.++. ...+| ..+ ..+|+.|++++|.+..
T Consensus 185 L~~~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~-LtsLP---~~l---~~~L~~L~Ls~N~L~~ 255 (754)
T PRK15370 185 LKILGLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQ-LTSIP---ATL---PDTIQEMELSINRITE 255 (754)
T ss_pred eCCCCcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCc-cccCC---hhh---hccccEEECcCCccCc
Confidence 33344444443 23445566666665555554322 12444 4444332 22333 221 1234445555544444
Q ss_pred CCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCC
Q 004197 279 LPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSL 358 (769)
Q Consensus 279 lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L 358 (769)
+|..+. .+|++|++++|.++.+ |..+. .+|++|++++|.++.+|..+. .+|++|++++|. +..+|.. + .
T Consensus 256 LP~~l~--s~L~~L~Ls~N~L~~L-P~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~ 324 (754)
T PRK15370 256 LPERLP--SALQSLDLFHNKISCL-PENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--P 324 (754)
T ss_pred CChhHh--CCCCEEECcCCccCcc-ccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--c
Confidence 444332 2444455544444444 33332 244455555444444443321 234444444433 3334332 1 1
Q ss_pred CCccEEEccCCcc
Q 004197 359 IRLEELYMGNCSI 371 (769)
Q Consensus 359 ~~L~~L~l~~~~~ 371 (769)
++|+.|++++|.+
T Consensus 325 ~sL~~L~Ls~N~L 337 (754)
T PRK15370 325 PGLKTLEAGENAL 337 (754)
T ss_pred ccceeccccCCcc
Confidence 3444444444433
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=9.4e-13 Score=128.63 Aligned_cols=107 Identities=25% Similarity=0.340 Sum_probs=73.7
Q ss_pred cccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeec-CCCcccchh-hccCCCCcEEEc
Q 004197 265 KLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWR-SDIVHLPKA-LGQLTKLRLLDL 341 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~-~~l~~lp~~-i~~l~~L~~L~l 341 (769)
.-..++|..|.|+.+| .+|+.+++||.|||++|.|+.|.|..|..|..|-.|-+.+ |+|+.+|+. ++.|..||.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3456677777777775 4567777777777777777777777777777776666655 577777754 667777777766
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
.-|. +..++.+.+..|++|..|.+.++.+.
T Consensus 148 Nan~-i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 148 NANH-INCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred Chhh-hcchhHHHHHHhhhcchhcccchhhh
Confidence 6554 56666666677777777766665543
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.4e-10 Score=105.58 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=51.1
Q ss_pred hcCCcccEEEecCcccCCCCcccc-ccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhc-cCCCCcE
Q 004197 261 KRTKKLRVLDLTRMRLLSLPSSID-LLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALG-QLTKLRL 338 (769)
Q Consensus 261 ~~l~~Lr~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~-~l~~L~~ 338 (769)
.+..++|.|+|+++.|+.+. .++ .+.+|+.|++++|.|+.+ +.+..+++|++|++++|.++.++..+. .+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 45667899999999888764 455 578899999999999888 578888999999999999988876653 6889999
Q ss_pred EEccCCcCccccCh-hhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEE
Q 004197 339 LDLTDCFHLKVIAP-DVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEIN 402 (769)
Q Consensus 339 L~l~~~~~l~~~~~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 402 (769)
|++++|. +..+.. ..++.+++|+.|++.+|.+... .......+..+|+|+.|+-.
T Consensus 93 L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~--------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK--------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS--------TTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch--------hhHHHHHHHHcChhheeCCE
Confidence 9998875 444322 1267888899999988877621 12233456677888887654
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.04 E-value=2.5e-12 Score=126.78 Aligned_cols=267 Identities=15% Similarity=0.167 Sum_probs=153.2
Q ss_pred cccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccc
Q 004197 474 QAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRL 553 (769)
Q Consensus 474 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~ 553 (769)
..+++|++|.+..|..+++..-.....++|+|++|.+++|+.+.. ........+...++.+...+|..++.-....
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~---~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~- 262 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG---NGVQALQRGCKELEKLSLKGCLELELEALLK- 262 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc---CcchHHhccchhhhhhhhcccccccHHHHHH-
Confidence 344555555555555544443221233455555555555554432 0000011222234444444443322211100
Q ss_pred cccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccc-cceeccCCC
Q 004197 554 KVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEI-NVDKIWHYN 632 (769)
Q Consensus 554 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~-~l~~i~~~~ 632 (769)
-.+.++-+.++++.+|..+++..-......+..|+.|+.++|..+...+....+ ...++|+.|.+..| .+++.....
T Consensus 263 ~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--~~~~~L~~l~l~~c~~fsd~~ft~ 340 (483)
T KOG4341|consen 263 AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG--QHCHNLQVLELSGCQQFSDRGFTM 340 (483)
T ss_pred HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh--cCCCceEEEeccccchhhhhhhhh
Confidence 122345566666777776665532223345677888888888876655443321 34588999999999 777652221
Q ss_pred CCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeeccccccCCcC-eeeecccCccccccCc
Q 004197 633 HLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTP-RFVFQRVTTLTLQDLP 711 (769)
Q Consensus 633 ~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~-~~~l~~L~~L~l~~c~ 711 (769)
. -.+++.|+.+++..|....+--..+...++|.|+.|.+++|..++. +|..+... ......|+.+.+++||
T Consensus 341 l----~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD----~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 341 L----GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD----EGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred h----hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh----hhhhhhhhccccccccceeeecCCC
Confidence 1 1367889999998887665432234456789999999999976654 33333221 2346678999999999
Q ss_pred ccccccCCCccccCCCcceEEEecCCCceeeccCC--CCccccccc
Q 004197 712 ELRCLYPGMHTLEWPALKFLVVSGCDKLKIFGADL--SQNNEVDQL 755 (769)
Q Consensus 712 ~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~l~~~~--~~~~~l~~l 755 (769)
.++.--..... .|++|+.+++.+|..+++=+... +.+|+++..
T Consensus 413 ~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 413 LITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred CchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 88765543333 57899999999999887755433 556666655
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=8.2e-11 Score=122.76 Aligned_cols=86 Identities=23% Similarity=0.237 Sum_probs=42.0
Q ss_pred hhhcCCcccEEEecCcccC-----CCCccccccCCccEEEeccccccc-------cChhhhhccCCCcEEEeecCCCc-c
Q 004197 259 FFKRTKKLRVLDLTRMRLL-----SLPSSIDLLVNLRTLCLDQSILGD-------IDIAIIGKLGNLEILSFWRSDIV-H 325 (769)
Q Consensus 259 ~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~l~~-------l~p~~i~~L~~L~~L~l~~~~l~-~ 325 (769)
.+..+..|++|+++++.++ .++..+...+.|++|+++++.+.. + +..+.++++|+.|++++|.+. .
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL-LQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH-HHHHHhcCceeEEEccCCCCChh
Confidence 3445555666666666553 234444455556666665554331 2 234444555555555555443 2
Q ss_pred cchhhccCCC---CcEEEccCCc
Q 004197 326 LPKALGQLTK---LRLLDLTDCF 345 (769)
Q Consensus 326 lp~~i~~l~~---L~~L~l~~~~ 345 (769)
.+..+..+.+ |++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc
Confidence 2333333333 5555555543
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=1.6e-10 Score=120.49 Aligned_cols=110 Identities=26% Similarity=0.278 Sum_probs=56.4
Q ss_pred hhhcCCcccEEEecCcccC-CCCccccccCC---ccEEEeccccccc-----cChhhhhcc-CCCcEEEeecCCCc----
Q 004197 259 FFKRTKKLRVLDLTRMRLL-SLPSSIDLLVN---LRTLCLDQSILGD-----IDIAIIGKL-GNLEILSFWRSDIV---- 324 (769)
Q Consensus 259 ~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~---L~~L~L~~~~l~~-----l~p~~i~~L-~~L~~L~l~~~~l~---- 324 (769)
.+..+++|+.|++++|.+. ..+..+..+.+ |++|++++|.+.. + ...+..+ ++|+.|++++|.++
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l-~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL-AKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH-HHHHHhCCCCceEEEcCCCcCCchHH
Confidence 3445566666666666554 23333433333 6666666665541 2 2334445 56666666666554
Q ss_pred -ccchhhccCCCCcEEEccCCcCcc-----ccChhhhcCCCCccEEEccCCcc
Q 004197 325 -HLPKALGQLTKLRLLDLTDCFHLK-----VIAPDVISSLIRLEELYMGNCSI 371 (769)
Q Consensus 325 -~lp~~i~~l~~L~~L~l~~~~~l~-----~~~~~~~~~L~~L~~L~l~~~~~ 371 (769)
.++..+..+.+|++|++++|. +. .++.. +..+++|++|++++|.+
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 155 EALAKALRANRDLKELNLANNG-IGDAGIRALAEG-LKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHH-HHhCCCCCEEeccCCcc
Confidence 233345555566666666654 22 12222 33445666666665554
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=9.6e-11 Score=110.42 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=116.9
Q ss_pred cCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEc
Q 004197 262 RTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDL 341 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 341 (769)
..+.|..|||++|.|+.+-.++.-++.+|.|++++|.|..+ ..+..|++|++||+++|.+.++-..-.+|.|.+.|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 45778999999999999999999999999999999999998 5699999999999999998888777778999999999
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcc
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEG 412 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 412 (769)
++|. ++.+.. +++|-+|..|++++|.+. .-..+..+++++.|+.+.+.+|....++..
T Consensus 360 a~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 360 AQNK-IETLSG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhhh-Hhhhhh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 9976 666654 889999999999999876 122347899999999999999987665543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=8.8e-10 Score=100.39 Aligned_cols=125 Identities=27% Similarity=0.357 Sum_probs=46.9
Q ss_pred ecCcccCCCCccccccCCccEEEeccccccccChhhhh-ccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccc
Q 004197 271 LTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIG-KLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKV 349 (769)
Q Consensus 271 L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~-~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~ 349 (769)
++.+.|...| .+.+...+++|+|+++.|+.+ +.++ .+.+|+.|++++|.++.++ ++..+++|++|++++|. ++.
T Consensus 4 lt~~~i~~~~-~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~ 78 (175)
T PF14580_consen 4 LTANMIEQIA-QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISS 78 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S
T ss_pred cccccccccc-ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCc
Confidence 3444455555 355667899999999999988 5677 6899999999999999886 68889999999999986 888
Q ss_pred cChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCC
Q 004197 350 IAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILP 410 (769)
Q Consensus 350 ~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 410 (769)
++.+....+++|++|++++|.+. ....+..+..+++|+.|++.+|.....+
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~----------~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKIS----------DLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS-------------SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred cccchHHhCCcCCEEECcCCcCC----------ChHHhHHHHcCCCcceeeccCCcccchh
Confidence 87652346999999999999886 2334678889999999999999865543
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.88 E-value=3.9e-11 Score=118.58 Aligned_cols=289 Identities=14% Similarity=0.157 Sum_probs=183.0
Q ss_pred ccceEEeecccc-cccccc--ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccC
Q 004197 455 SLRELKLKLDFT-DVRSMK--LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAF 531 (769)
Q Consensus 455 ~L~~l~l~~~~~-~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f 531 (769)
.|+.+.+.+..- ...++. -..+|++++|.+.+|..+++.........+++|+.|.+..|+.++... ......++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~---Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS---LKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH---HHHHHHhh
Confidence 467777766541 122222 377888888888888776665433334467888888888887765431 11245678
Q ss_pred CccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCccccc
Q 004197 532 PLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVV 611 (769)
Q Consensus 532 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 611 (769)
|+|++|.+++|+.++.-..... ...+..++.+..++|..+..-.-......++-+.++++.+|..+.+...... -..
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~-~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i--~~~ 292 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQAL-QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI--ACG 292 (483)
T ss_pred hhHHHhhhccCchhhcCcchHH-hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH--hhh
Confidence 8888888888887766322211 2234557777777776654322112234556667777777876655432111 124
Q ss_pred CCcccccccccc-ccee--ccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeeccc
Q 004197 612 LPNLEALEISEI-NVDK--IWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISED 688 (769)
Q Consensus 612 ~~~L~~L~L~~~-~l~~--i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~ 688 (769)
+..|+.|..++| ++++ +|.-+ .+.++|+.|.+..|..+++......-.+++.|+.+++.+|-.... .
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg------~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d----~ 362 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALG------QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD----G 362 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHh------cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh----h
Confidence 577888888888 6554 23222 256889999999998877664333445778899998888854432 1
Q ss_pred cccCCcCeeeecccCccccccCcccccc-----cCCCccccCCCcceEEEecCCCceeeccCC-CCcccccccCCCCCCc
Q 004197 689 RVDHVTPRFVFQRVTTLTLQDLPELRCL-----YPGMHTLEWPALKFLVVSGCDKLKIFGADL-SQNNEVDQLGIPAQRP 762 (769)
Q Consensus 689 ~~~~~~~~~~l~~L~~L~l~~c~~L~~l-----~~~~~~l~~~~L~~L~i~~C~~L~~l~~~~-~~~~~l~~l~i~~~~~ 762 (769)
.+.+. ....|+|+.|.++.|..+++. ..+... ...|+.+.+.+||.++.--..+ ...+.|+.++..+++.
T Consensus 363 tL~sl--s~~C~~lr~lslshce~itD~gi~~l~~~~c~--~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 363 TLASL--SRNCPRLRVLSLSHCELITDEGIRHLSSSSCS--LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hHhhh--ccCCchhccCChhhhhhhhhhhhhhhhhcccc--ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 22222 457899999999999988766 222233 3789999999999997644333 5567888877766654
Q ss_pred c
Q 004197 763 L 763 (769)
Q Consensus 763 ~ 763 (769)
+
T Consensus 439 v 439 (483)
T KOG4341|consen 439 V 439 (483)
T ss_pred h
Confidence 3
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.1e-10 Score=119.65 Aligned_cols=176 Identities=23% Similarity=0.271 Sum_probs=135.8
Q ss_pred ceEEEeecCCCCCCCCcc-CCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEEEe
Q 004197 217 YFAIFLKDSIINDIPEVL-ESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCL 294 (769)
Q Consensus 217 lr~L~l~~~~~~~l~~~~-~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 294 (769)
....+++.|++..+|... .+-.|. +.+..+ .+..+| ..+.++..|.+|||+.|+++.+|..++.|+ |+.|.+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip----~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIP----EAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecc----hhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 445677777777777544 444555 333333 233454 335788889999999999988888887764 888999
Q ss_pred ccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccc
Q 004197 295 DQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWE 374 (769)
Q Consensus 295 ~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~ 374 (769)
++|+++.+ |..|+.+..|..||.+.|.+..+|..++.+.+|+.|++..|. +..+|++ +..| .|..|+++.|.+. .
T Consensus 151 sNNkl~~l-p~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLTSL-PEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccccC-CcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee-e
Confidence 99999999 888998889999999999999999999999999999888865 7788888 6644 4888898888776 3
Q ss_pred eeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccc
Q 004197 375 VERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFF 414 (769)
Q Consensus 375 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~ 414 (769)
+| ..+.+|++|+.|.+.+|..+.-|..++
T Consensus 226 iP-----------v~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 226 LP-----------VDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred cc-----------hhhhhhhhheeeeeccCCCCCChHHHH
Confidence 33 678889999999999988888777665
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.3e-09 Score=106.87 Aligned_cols=207 Identities=20% Similarity=0.173 Sum_probs=87.6
Q ss_pred EEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHHHHhhccceEEEEeCCcccccCCccccCc
Q 004197 137 GVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAISIAFRDKIAFAVRNKDVWKWPDADALKK 216 (769)
Q Consensus 137 ~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 216 (769)
|.||.++.=-+|.-+++|+++.....-.........+++.+-|..+++.= ...++
T Consensus 68 ~kV~~p~d~~~t~~ery~e~~s~~sd~~~~~si~nK~vE~iGfDki~akQ-------------------------sn~kk 122 (505)
T KOG3207|consen 68 GKVKFPTDLLRTFKERYYEKYSYSSDLESVLSISNKQVEFIGFDKIAAKQ-------------------------SNLKK 122 (505)
T ss_pred ccCCCCccHHHHHHHHHHHhhcCCcchhhHhhhcCceeEEecHHHHHHHh-------------------------hhHHh
Confidence 45566666666666666665443322222333333344445554443221 11233
Q ss_pred ceEEEeecCCCCCCCC---ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCcc--ccccCCcc
Q 004197 217 YFAIFLKDSIINDIPE---VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSS--IDLLVNLR 290 (769)
Q Consensus 217 lr~L~l~~~~~~~l~~---~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~l~~L~ 290 (769)
+|.+++.++.++..+. ...++++| |.++.+-...-.+ +..+...+++|+.|+++.|.+.....+ -..+.+|+
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~--v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP--VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH--HHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 4444444444433331 11344444 4444432211100 023345555555555555544422111 12445555
Q ss_pred EEEecccccc--ccChhhhhccCCCcEEEeecCC-CcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEcc
Q 004197 291 TLCLDQSILG--DIDIAIIGKLGNLEILSFWRSD-IVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMG 367 (769)
Q Consensus 291 ~L~L~~~~l~--~l~p~~i~~L~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~ 367 (769)
.|.|++|+++ ++ -.....+++|+.|++.+|. +..--.+...+..|+.|+|++|..+..-.....+.++.|..|+++
T Consensus 201 ~L~l~~CGls~k~V-~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDV-QWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred eEEeccCCCCHHHH-HHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 5555555544 22 2233344555555555552 211111223344555555555442221100114455555555555
Q ss_pred CCcc
Q 004197 368 NCSI 371 (769)
Q Consensus 368 ~~~~ 371 (769)
.+.+
T Consensus 280 ~tgi 283 (505)
T KOG3207|consen 280 STGI 283 (505)
T ss_pred ccCc
Confidence 4443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=5.4e-10 Score=114.74 Aligned_cols=143 Identities=23% Similarity=0.301 Sum_probs=113.8
Q ss_pred ccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch
Q 004197 249 SFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK 328 (769)
Q Consensus 249 ~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~ 328 (769)
...+| .+ +..|..|..+.|..|.+..+|..++++..|.||+|+.|.++.+ |..++.|+ |+.|-+++|+++.+|.
T Consensus 87 ~~elp---~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNNkl~~lp~ 160 (722)
T KOG0532|consen 87 FSELP---EE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNNKLTSLPE 160 (722)
T ss_pred cccCc---hH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecCccccCCc
Confidence 34566 44 4677888888888888888888899999999999999998888 78888775 8888899999999999
Q ss_pred hhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCC
Q 004197 329 ALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDII 408 (769)
Q Consensus 329 ~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 408 (769)
.++.+.+|.+|+.+.|. +..+|.. ++.+.+|+.|.+..|... .++ .++..++ |..|+++.|....
T Consensus 161 ~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~-~lp-----------~El~~Lp-Li~lDfScNkis~ 225 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE-DLP-----------EELCSLP-LIRLDFSCNKISY 225 (722)
T ss_pred ccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-hCC-----------HHHhCCc-eeeeecccCceee
Confidence 89888889999888876 7778887 888889998888777665 222 5666554 7888888887766
Q ss_pred CCcc
Q 004197 409 LPEG 412 (769)
Q Consensus 409 ~~~~ 412 (769)
+|-.
T Consensus 226 iPv~ 229 (722)
T KOG0532|consen 226 LPVD 229 (722)
T ss_pred cchh
Confidence 6654
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=2.4e-08 Score=107.24 Aligned_cols=130 Identities=32% Similarity=0.405 Sum_probs=104.4
Q ss_pred hcCCcccEEEecCcccCCCCccccccC-CccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEE
Q 004197 261 KRTKKLRVLDLTRMRLLSLPSSIDLLV-NLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLL 339 (769)
Q Consensus 261 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 339 (769)
..+..+..|++.++.++++|...+.+. +|++|+++++.+..+ |..++.+++|+.|++++|.+..+|...+.+++|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 456789999999999999988888885 999999999999998 788999999999999999999999888789999999
Q ss_pred EccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeC
Q 004197 340 DLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKN 405 (769)
Q Consensus 340 ~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 405 (769)
+++++. +..+|.. ++.+..|++|.++++... ..+..+.++.++..|.+..+.
T Consensus 192 ~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 192 DLSGNK-ISDLPPE-IELLSALEELDLSNNSII------------ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred eccCCc-cccCchh-hhhhhhhhhhhhcCCcce------------ecchhhhhcccccccccCCce
Confidence 999976 8888886 567777999988877422 122456666666666655444
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.62 E-value=2.8e-08 Score=74.19 Aligned_cols=59 Identities=32% Similarity=0.407 Sum_probs=37.4
Q ss_pred CcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCC
Q 004197 264 KKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSD 322 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~ 322 (769)
++|++|++++|.++.+| ..+..+++|++|++++|.++.++|..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666666666665 345666666666666666666655566666666666666654
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=6e-08 Score=104.18 Aligned_cols=148 Identities=28% Similarity=0.344 Sum_probs=67.2
Q ss_pred cceEEEeecCCCCCCCCccCCC--CcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEE
Q 004197 216 KYFAIFLKDSIINDIPEVLESP--QLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTL 292 (769)
Q Consensus 216 ~lr~L~l~~~~~~~l~~~~~~~--~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 292 (769)
.++.+.+..+.+..++...... +|+ +.+.++.. ..+| ..+..+++|+.|++++|.+.++|...+.+..|+.|
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~----~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLP----SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccch-hhhh----hhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 4455555555555554433221 444 44443322 1111 11344555555555555555554444445555555
Q ss_pred EeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCcc
Q 004197 293 CLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSI 371 (769)
Q Consensus 293 ~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~ 371 (769)
++++|.+..+ |..++.+.+|++|.+++|.+...+..+.++.++..|.+.++. +..++.. ++.+++++.|+++++.+
T Consensus 192 ~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 192 DLSGNKISDL-PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQI 267 (394)
T ss_pred eccCCccccC-chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceeccccccc
Confidence 5555555555 444444444555555555444444444555555555444332 2222222 44555555555544443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=9.3e-09 Score=97.28 Aligned_cols=109 Identities=28% Similarity=0.332 Sum_probs=69.1
Q ss_pred hcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEE
Q 004197 261 KRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLD 340 (769)
Q Consensus 261 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 340 (769)
.-.+.+|+|++++|++..+- .+..+++|..|||++|.++++ ...-.+|-|..+|.+++|.+..+ +++++|.+|..|+
T Consensus 304 KL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLD 380 (490)
T ss_pred hhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheecc
Confidence 44566677777777666553 266667777777777766665 34444566677777777766665 3566777777777
Q ss_pred ccCCcCccccC--hhhhcCCCCccEEEccCCccccc
Q 004197 341 LTDCFHLKVIA--PDVISSLIRLEELYMGNCSIEWE 374 (769)
Q Consensus 341 l~~~~~l~~~~--~~~~~~L~~L~~L~l~~~~~~~~ 374 (769)
+++|. +..+. .+ ||+|+.|+++.+.+|.+...
T Consensus 381 l~~N~-Ie~ldeV~~-IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 381 LSSNQ-IEELDEVNH-IGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ccccc-hhhHHHhcc-cccccHHHHHhhcCCCcccc
Confidence 77654 33331 12 67777777777777766543
No 37
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.49 E-value=2.8e-07 Score=94.28 Aligned_cols=69 Identities=26% Similarity=0.414 Sum_probs=57.0
Q ss_pred HHHHHHhhc--CCccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHHHHhh
Q 004197 122 LAMQTALID--VNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAISIAF 192 (769)
Q Consensus 122 ~~i~~~l~~--~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~~~~~ 192 (769)
+.|.+.|.+ ++.++|+|+||||+||||||..+|++...+..|+.++|+..+.... ..++.++++..+..
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~--~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPS--LEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SC--CHHHHHHHHHHHTC
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccc--cccccccccccccc
Confidence 688888887 7799999999999999999999999877899999999997765432 36667777766663
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.4e-08 Score=97.92 Aligned_cols=137 Identities=23% Similarity=0.268 Sum_probs=89.3
Q ss_pred hcCCcccEEEecCcccCCCC--ccccccCCccEEEeccccccccC--hhhhhccCCCcEEEeecCCCcccchh--hccCC
Q 004197 261 KRTKKLRVLDLTRMRLLSLP--SSIDLLVNLRTLCLDQSILGDID--IAIIGKLGNLEILSFWRSDIVHLPKA--LGQLT 334 (769)
Q Consensus 261 ~~l~~Lr~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~l~~l~--p~~i~~L~~L~~L~l~~~~l~~lp~~--i~~l~ 334 (769)
+++++||...|.++.+...+ .....|++++.|||++|-+.... ......|++|+.|+++.|.+...-.+ -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 57889999999999888666 36778899999999988655330 34566788999999998876633222 23567
Q ss_pred CCcEEEccCCcCccc--cChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCC
Q 004197 335 KLRLLDLTDCFHLKV--IAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILP 410 (769)
Q Consensus 335 ~L~~L~l~~~~~l~~--~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 410 (769)
+|+.|.++.|. +.. +.. .....++|+.|++.+|....... ..-.-++.|+.|++++|..-.++
T Consensus 198 ~lK~L~l~~CG-ls~k~V~~-~~~~fPsl~~L~L~~N~~~~~~~-----------~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 198 HLKQLVLNSCG-LSWKDVQW-ILLTFPSLEVLYLEANEIILIKA-----------TSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred hhheEEeccCC-CCHHHHHH-HHHhCCcHHHhhhhcccccceec-----------chhhhhhHHhhccccCCcccccc
Confidence 78888888876 221 111 14467788888877764221111 22334556777777777654443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.45 E-value=1.7e-07 Score=69.93 Aligned_cols=59 Identities=32% Similarity=0.464 Sum_probs=47.1
Q ss_pred CCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEccCCc
Q 004197 287 VNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCF 345 (769)
Q Consensus 287 ~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 345 (769)
++|++|++++|.++.+++..+.++++|++|++++|.++.+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 468888888888888866788888888888888888887764 56788888888887764
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=5e-07 Score=101.65 Aligned_cols=104 Identities=24% Similarity=0.235 Sum_probs=66.4
Q ss_pred ccEEEecccccc-ccChhhhhccCCCcEEEeecCCCc-ccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEc
Q 004197 289 LRTLCLDQSILG-DIDIAIIGKLGNLEILSFWRSDIV-HLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYM 366 (769)
Q Consensus 289 L~~L~L~~~~l~-~l~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l 366 (769)
++.|+|++|.+. .+ |..++++++|++|++++|.+. .+|..++++++|+.|++++|.....+|.. ++++++|+.|++
T Consensus 420 v~~L~L~~n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 566777777665 44 666777777777777777665 56666777777777777776544455655 677777777777
Q ss_pred cCCccccceeccccccccCCchhhcCC-CCccEEEEEeeC
Q 004197 367 GNCSIEWEVERVNSERSNASLDELMLL-PWLTTIEINIKN 405 (769)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~l~~l-~~L~~L~l~~~~ 405 (769)
++|.+.+.+| ..++.+ .++..+++.+|.
T Consensus 498 s~N~l~g~iP-----------~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVP-----------AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCC-----------hHHhhccccCceEEecCCc
Confidence 7776665555 333332 344556666554
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=2.7e-06 Score=95.77 Aligned_cols=106 Identities=23% Similarity=0.342 Sum_probs=91.8
Q ss_pred cccEEEecCcccC-CCCccccccCCccEEEecccccc-ccChhhhhccCCCcEEEeecCCCc-ccchhhccCCCCcEEEc
Q 004197 265 KLRVLDLTRMRLL-SLPSSIDLLVNLRTLCLDQSILG-DIDIAIIGKLGNLEILSFWRSDIV-HLPKALGQLTKLRLLDL 341 (769)
Q Consensus 265 ~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~l~-~l~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l 341 (769)
.++.|+|+++.+. .+|..++.+.+|++|+|++|.+. .+ |..++.+++|++|++++|.+. .+|..++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC-ChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4788999999998 68999999999999999999987 67 889999999999999999888 78999999999999999
Q ss_pred cCCcCccccChhhhcC-CCCccEEEccCCccc
Q 004197 342 TDCFHLKVIAPDVISS-LIRLEELYMGNCSIE 372 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~-L~~L~~L~l~~~~~~ 372 (769)
++|.....+|.. ++. +.++..+++.+|...
T Consensus 498 s~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCcccccCChH-HhhccccCceEEecCCccc
Confidence 998866678887 554 457778888877654
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=3.2e-06 Score=86.85 Aligned_cols=135 Identities=15% Similarity=0.226 Sum_probs=89.8
Q ss_pred ccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccc-cceeccCCCCCC
Q 004197 557 SFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEI-NVDKIWHYNHLP 635 (769)
Q Consensus 557 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~-~l~~i~~~~~~~ 635 (769)
.+++++.|++++| .++.+|. -.++|++|.+.+|..+..++. ..+++|+.|+|++| ++..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~------~LP~nLe~L~Ls~Cs~L~sL------- 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-----LPNELTEITIENCNNLTTLPG------SIPEGLEKLTVCHCPEISGL------- 110 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-----CCCCCcEEEccCCCCcccCCc------hhhhhhhheEccCccccccc-------
Confidence 3588999999999 7887752 345799999999999877762 13578999999999 77653
Q ss_pred CccCcCCCccEEEEec--CCCcceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeee-cccCccccccCcc
Q 004197 636 IMLPHFQSLTRLIVWH--CHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVF-QRVTTLTLQDLPE 712 (769)
Q Consensus 636 ~~l~~l~~L~~L~l~~--c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l-~~L~~L~l~~c~~ 712 (769)
.++|+.|++.. |..+..+| ++|++|.+.++...... ..+ ..+ ++|++|++.+|..
T Consensus 111 -----P~sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~----~lp-----~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 111 -----PESVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQA----RID-----NLISPSLKTLSLTGCSN 168 (426)
T ss_pred -----ccccceEEeCCCCCcccccCc--------chHhheecccccccccc----ccc-----cccCCcccEEEecCCCc
Confidence 24677777753 23344442 46788887553211110 000 112 4699999999986
Q ss_pred cccccCCCccccCCCcceEEEecCC
Q 004197 713 LRCLYPGMHTLEWPALKFLVVSGCD 737 (769)
Q Consensus 713 L~~l~~~~~~l~~~~L~~L~i~~C~ 737 (769)
+. +|.+ .+.+|+.|.++.+.
T Consensus 169 i~-LP~~----LP~SLk~L~ls~n~ 188 (426)
T PRK15386 169 II-LPEK----LPESLQSITLHIEQ 188 (426)
T ss_pred cc-Cccc----ccccCcEEEecccc
Confidence 53 4433 23689999988753
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.16 E-value=3.8e-06 Score=86.26 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=34.2
Q ss_pred CCCCceEEEecCCCcceeccCccccccccCC-ccceeeccccccccccccccccccccCCccEEEEcCCCCCccc
Q 004197 502 LPQLKLLWVQNNPDFFCIVDSMEMVACDAFP-LLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNI 575 (769)
Q Consensus 502 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 575 (769)
+++++.|.+++| .++.++ .+| +|+.|.+.+|.+++.++.. ..++|+.|.+++|+.+..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP---------~LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP---------VLPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred hcCCCEEEeCCC-CCcccC---------CCCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCccccccc
Confidence 467777777777 444331 233 4777777776666555421 1246666777666665544
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.5e-06 Score=57.94 Aligned_cols=38 Identities=37% Similarity=0.545 Sum_probs=18.4
Q ss_pred cccEEEecCcccCCCCccccccCCccEEEecccccccc
Q 004197 265 KLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDI 302 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l 302 (769)
+|++|++++|.|+++|..+++|++|++|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555554455555555555555554444
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.3e-07 Score=89.73 Aligned_cols=84 Identities=24% Similarity=0.322 Sum_probs=49.7
Q ss_pred CccEEEecccccc--ccChhhhhccCCCcEEEeecCCCc-ccchhhccCCCCcEEEccCCcCccccChh-hhcCCCCccE
Q 004197 288 NLRTLCLDQSILG--DIDIAIIGKLGNLEILSFWRSDIV-HLPKALGQLTKLRLLDLTDCFHLKVIAPD-VISSLIRLEE 363 (769)
Q Consensus 288 ~L~~L~L~~~~l~--~l~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~-~~~~L~~L~~ 363 (769)
.|++|||+...|+ .+ ..-++.+.+|+.|.+.+..+. .+-..+.+-.+|+.|+++.|.+++..... ++.+++.|+.
T Consensus 186 Rlq~lDLS~s~it~stl-~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTL-HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHH-HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3666666666544 34 344556666777777776655 34445666677777777777666554322 2455666666
Q ss_pred EEccCCccc
Q 004197 364 LYMGNCSIE 372 (769)
Q Consensus 364 L~l~~~~~~ 372 (769)
|+++.|+..
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 666665544
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=3.6e-06 Score=57.17 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=27.3
Q ss_pred CCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccc
Q 004197 287 VNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLP 327 (769)
Q Consensus 287 ~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp 327 (769)
++|++|++++|.|+++ |..+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCCc
Confidence 3677777777777777 556777777777777777776654
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.03 E-value=5.9e-07 Score=99.76 Aligned_cols=252 Identities=19% Similarity=0.168 Sum_probs=132.5
Q ss_pred cccccccEEEecccCCcccccccCCCCCCCCCceEEEecC-CCcceeccCccccccccCCccceeecccccccccccccc
Q 004197 474 QAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNN-PDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDR 552 (769)
Q Consensus 474 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~ 552 (769)
..+++|+.|.+.++....+..........++|+.|++.++ ...... ..........+++|+.|.+..+..+++.....
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 3467778888877776665221111456788888888773 221110 11111234455788888888877655543322
Q ss_pred ccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccc-c---ceec
Q 004197 553 LKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEI-N---VDKI 628 (769)
Q Consensus 553 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~-~---l~~i 628 (769)
. ...+++|+.|.+.+|..+++..-......++.|++|++++|..+.+-..... ...+|+|+.|.+..+ . ++..
T Consensus 264 l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~--~~~c~~l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 264 L-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL--LKNCPNLRELKLLSLNGCPSLTDL 340 (482)
T ss_pred H-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH--HHhCcchhhhhhhhcCCCccHHHH
Confidence 1 2237889999988888766554444567788899999999887643221111 123566555554443 2 3221
Q ss_pred cCCCCCCCccCc-C-CCccEEEEecCCCcceecchhhHhhcccCc-EEeEccccccc-eeeccccccCCcCeeeecccCc
Q 004197 629 WHYNHLPIMLPH-F-QSLTRLIVWHCHKLKYIFLASMIRSFEQLQ-QLDIVNCRGLQ-EIISEDRVDHVTPRFVFQRVTT 704 (769)
Q Consensus 629 ~~~~~~~~~l~~-l-~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~-~L~l~~c~~l~-~i~~~~~~~~~~~~~~l~~L~~ 704 (769)
-.. .+.. . ..+..+.+.+|++++++. ..... ..... .+.+.+|+.++ .+.. . ...+..++.
T Consensus 341 ~l~-----~~~~~~~d~~~~~~~~~~~~l~~~~-l~~~~-~~~~~~~~~l~gc~~l~~~l~~------~--~~~~~~l~~ 405 (482)
T KOG1947|consen 341 SLS-----GLLTLTSDDLAELILRSCPKLTDLS-LSYCG-ISDLGLELSLRGCPNLTESLEL------R--LCRSDSLRV 405 (482)
T ss_pred HHH-----HhhccCchhHhHHHHhcCCCcchhh-hhhhh-ccCcchHHHhcCCcccchHHHH------H--hccCCccce
Confidence 000 0001 1 134444555555555441 11111 12222 34555665551 1100 0 112233777
Q ss_pred cccccCcccccccCCCccccCCCcceEEEecCCCceeecc
Q 004197 705 LTLQDLPELRCLYPGMHTLEWPALKFLVVSGCDKLKIFGA 744 (769)
Q Consensus 705 L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~l~~ 744 (769)
|.+..|...+.-........+..+..+.+.+|+.++.-..
T Consensus 406 L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 406 LNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred EecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 7888777665444332221146677788888877765543
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.01 E-value=7.8e-07 Score=86.75 Aligned_cols=185 Identities=17% Similarity=0.100 Sum_probs=110.4
Q ss_pred ccCcceEEEeecCCCCC-----CCCcc-CCCCcE-EEecCCC---CccccCC---cchHhhhcCCcccEEEecCcccC-C
Q 004197 213 ALKKYFAIFLKDSIIND-----IPEVL-ESPQLE-FLLISPK---NSFVAPN---VSENFFKRTKKLRVLDLTRMRLL-S 278 (769)
Q Consensus 213 ~~~~lr~L~l~~~~~~~-----l~~~~-~~~~Lr-l~l~~~~---~~~~~~~---~~~~~~~~l~~Lr~L~L~~~~i~-~ 278 (769)
....+..+.+++|.++. +.+.. +-+.|| ..+++.. ....+|. .+...+..+++|++||||.|.+. .
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34678889999988732 22222 455777 6555432 2224441 12233456779999999999775 2
Q ss_pred CC----ccccccCCccEEEeccccccccChh-------------hhhccCCCcEEEeecCCCcccc-----hhhccCCCC
Q 004197 279 LP----SSIDLLVNLRTLCLDQSILGDIDIA-------------IIGKLGNLEILSFWRSDIVHLP-----KALGQLTKL 336 (769)
Q Consensus 279 lp----~~i~~l~~L~~L~L~~~~l~~l~p~-------------~i~~L~~L~~L~l~~~~l~~lp-----~~i~~l~~L 336 (769)
-+ .-+..++.|+.|.|.+|.+....-. .++.-++|+++...+|++..-+ ..+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 22 3356788899999999987643111 2234467888888888766433 345566777
Q ss_pred cEEEccCCcCcc----ccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeC
Q 004197 337 RLLDLTDCFHLK----VIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKN 405 (769)
Q Consensus 337 ~~L~l~~~~~l~----~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 405 (769)
..+.+..|..-. .+... +..+++|+.|++.+|.++.... ...-..+...++|+.|++..|-
T Consensus 188 eevr~~qN~I~~eG~~al~ea-l~~~~~LevLdl~DNtft~egs-------~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEA-LEHCPHLEVLDLRDNTFTLEGS-------VALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred ceEEEecccccCchhHHHHHH-HHhCCcceeeecccchhhhHHH-------HHHHHHhcccchheeecccccc
Confidence 777777654110 11112 5677788888887777652211 1112345666677777776654
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.6e-07 Score=86.80 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=75.2
Q ss_pred cccceEEeecccccccccc--ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccC
Q 004197 454 ESLRELKLKLDFTDVRSMK--LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAF 531 (769)
Q Consensus 454 ~~L~~l~l~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f 531 (769)
..+++++|+...++...+. +..+++|+.|.+.+....+.+... +..-.+|+.|+++.|.++.... .......+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~--iAkN~~L~~lnlsm~sG~t~n~---~~ll~~sc 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT--IAKNSNLVRLNLSMCSGFTENA---LQLLLSSC 259 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH--HhccccceeeccccccccchhH---HHHHHHhh
Confidence 3577788887776555555 588899999999888776655443 3445688888888887655310 00123345
Q ss_pred CccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchH-HhhcCCCCcEEEEccCchh
Q 004197 532 PLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLS-TAKCLPRLERVAVINCSKM 598 (769)
Q Consensus 532 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~l~~L~~L~i~~c~~l 598 (769)
..|..|.+++|--.++.. .....+--++|+.|.|++|.+--.....+ ....+|.|.+|++++|..+
T Consensus 260 s~L~~LNlsWc~l~~~~V-tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKV-TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred hhHhhcCchHhhccchhh-hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 556666666654333321 11111223556666666654322111111 2234455555555554443
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.95 E-value=3.5e-06 Score=94.38 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=87.5
Q ss_pred cCcceEEEeecCCCC--CCC-C-ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCC
Q 004197 214 LKKYFAIFLKDSIIN--DIP-E-VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVN 288 (769)
Q Consensus 214 ~~~lr~L~l~~~~~~--~l~-~-~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~ 288 (769)
..++++|++.+...- .-+ + ..-+|.|| |.+.+.....+- +...+.++++|+.||+|+++++.+ ..+++|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 367888888875431 111 1 12588888 888776543321 135567899999999999999887 67899999
Q ss_pred ccEEEecccccccc-ChhhhhccCCCcEEEeecCCCcccch-------hhccCCCCcEEEccCCc
Q 004197 289 LRTLCLDQSILGDI-DIAIIGKLGNLEILSFWRSDIVHLPK-------ALGQLTKLRLLDLTDCF 345 (769)
Q Consensus 289 L~~L~L~~~~l~~l-~p~~i~~L~~L~~L~l~~~~l~~lp~-------~i~~l~~L~~L~l~~~~ 345 (769)
|+.|.+++-.+..- +-..+.+|++|++||+|......-+. .-..|++||.|+.++..
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 99999988776532 12567889999999999874443321 12237777777777644
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.94 E-value=1.9e-07 Score=99.09 Aligned_cols=127 Identities=22% Similarity=0.273 Sum_probs=96.2
Q ss_pred CcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEcc
Q 004197 264 KKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLT 342 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 342 (769)
..|.+-+.++|.+..+-.++.-++.|+.|+|++|+++.+ ..+..|++|.+|||++|.+..+|. +...+. |+.|+++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 356777888888877777888888999999999998888 588889999999999998887774 222333 8888888
Q ss_pred CCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCC
Q 004197 343 DCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKND 406 (769)
Q Consensus 343 ~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 406 (769)
+|. ++.+-. +.+|.+|+.|++++|.+.. ...+.-|..+..|+.|.+.+|..
T Consensus 241 nN~-l~tL~g--ie~LksL~~LDlsyNll~~----------hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNA-LTTLRG--IENLKSLYGLDLSYNLLSE----------HSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccH-HHhhhh--HHhhhhhhccchhHhhhhc----------chhhhHHHHHHHHHHHhhcCCcc
Confidence 875 665544 7889999999988887652 22345566667788888888764
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=1.1e-06 Score=94.44 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=44.7
Q ss_pred cccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCC
Q 004197 265 KLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDC 344 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 344 (769)
.+..+.+..+.+..+-..++.+.+|.+|++.+|.|+.+ ...+..+++|++|++++|.|..+. ++..++.|+.|++.+|
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 33333344444443323344444455555555444444 122444445555555555444442 2344444445554444
Q ss_pred cCccccChhhhcCCCCccEEEccCCcc
Q 004197 345 FHLKVIAPDVISSLIRLEELYMGNCSI 371 (769)
Q Consensus 345 ~~l~~~~~~~~~~L~~L~~L~l~~~~~ 371 (769)
. +..+.. +..+++|+.+++++|.+
T Consensus 151 ~-i~~~~~--~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 151 L-ISDISG--LESLKSLKLLDLSYNRI 174 (414)
T ss_pred c-chhccC--CccchhhhcccCCcchh
Confidence 3 333332 33344444444444443
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=1.9e-06 Score=92.63 Aligned_cols=108 Identities=31% Similarity=0.385 Sum_probs=76.0
Q ss_pred hhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEE
Q 004197 260 FKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLL 339 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 339 (769)
+..+++|.+|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++|.+..++ .+..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 4567777888888887777665577778888888888887777 66777777888888888777664 34557777777
Q ss_pred EccCCcCccccCh-hhhcCCCCccEEEccCCccc
Q 004197 340 DLTDCFHLKVIAP-DVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 340 ~l~~~~~l~~~~~-~~~~~L~~L~~L~l~~~~~~ 372 (769)
++++|. +..+.. . ...+.+++.+.+.++.+.
T Consensus 168 ~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 168 DLSYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 777765 444443 1 256777777777766554
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=2.2e-06 Score=71.94 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=52.6
Q ss_pred cccEEEecCcccCCCCc---cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEc
Q 004197 265 KLRVLDLTRMRLLSLPS---SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDL 341 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~---~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 341 (769)
.+..+||++|.+..+++ .+.+..+|...+|++|.++++|+....+.+.+.+|++++|.+..+|.++.-++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34455555555443332 234445555556666665555222233344555666666666666655556666666666
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCC
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNC 369 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~ 369 (769)
+.|. +...|.- +..|.+|-.|+..++
T Consensus 108 ~~N~-l~~~p~v-i~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 108 RFNP-LNAEPRV-IAPLIKLDMLDSPEN 133 (177)
T ss_pred ccCc-cccchHH-HHHHHhHHHhcCCCC
Confidence 5544 4444444 344555555554333
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=1.3e-05 Score=89.80 Aligned_cols=56 Identities=23% Similarity=0.431 Sum_probs=25.5
Q ss_pred cCCccEEEecccccc--ccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccC
Q 004197 286 LVNLRTLCLDQSILG--DIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTD 343 (769)
Q Consensus 286 l~~L~~L~L~~~~l~--~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 343 (769)
++.|+.|.+++-.+. ++ -.-..+++||..||+|+|+++.+ .++++|++|+.|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhH-HHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence 445555555443321 22 12233445555555555555444 4455555555554433
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=7.9e-06 Score=77.90 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=15.8
Q ss_pred cCCcccEEEecCcccCC---CCccccccCCccEEEecccc
Q 004197 262 RTKKLRVLDLTRMRLLS---LPSSIDLLVNLRTLCLDQSI 298 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~~~ 298 (769)
.+..++.|||.+|.|+. +-..+.++++|++|+++.|+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 34444555555544432 22222344444444444444
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=1.9e-06 Score=91.68 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=48.2
Q ss_pred hhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChh-hhhccCCCcEEEeecCCCcccchhhccCCCCcE
Q 004197 260 FKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIA-IIGKLGNLEILSFWRSDIVHLPKALGQLTKLRL 338 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~-~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 338 (769)
+.-++.|+.|+|++|.+.+.- .+..|++|++|||+.|.+..+ |. +...+ +|+.|.+++|.++++ .++.+|.+|+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~v-p~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHV-PQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccc-cccchhhh-hheeeeecccHHHhh-hhHHhhhhhhc
Confidence 334455555555555555443 445555555555555555444 22 11122 255555555555444 24555555555
Q ss_pred EEccCCcCc--cccChhhhcCCCCccEEEccCCc
Q 004197 339 LDLTDCFHL--KVIAPDVISSLIRLEELYMGNCS 370 (769)
Q Consensus 339 L~l~~~~~l--~~~~~~~~~~L~~L~~L~l~~~~ 370 (769)
|++++|--. ..+.+ ++.|..|+.|++.||.
T Consensus 259 LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cchhHhhhhcchhhhH--HHHHHHHHHHhhcCCc
Confidence 555554211 11111 3444555555555543
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.65 E-value=9e-06 Score=79.54 Aligned_cols=228 Identities=21% Similarity=0.181 Sum_probs=143.5
Q ss_pred HHHHHHHHhhhhcCCCeEEEEE--cCCCceEehhHHHHHHHHHHhhccceEEEEeCCcccccCCccccCcceEEEeecCC
Q 004197 149 LVKEFARRAIEDKLCDMVVFSE--DGSNKFFSMHDVVRDVAISIAFRDKIAFAVRNKDVWKWPDADALKKYFAIFLKDSI 226 (769)
Q Consensus 149 la~~v~~~~~~~~~F~~~~~~~--~~~~~~~~~hdl~~dl~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~ 226 (769)
-|+.+.+-+.....+..+-|.+ .||.+ -.+.+.+.-+.....+ .++++.++++.|-
T Consensus 46 Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~-~Ei~e~L~~l~~aL~~---------------------~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 46 AARAIAKVLASKKELREVNLSDMFTGRLK-DEIPEALKMLSKALLG---------------------CPKLQKLDLSDNA 103 (382)
T ss_pred HHHHHHHHHhhcccceeeehHhhhcCCcH-HHHHHHHHHHHHHHhc---------------------CCceeEeeccccc
Confidence 3677777666666666666642 23322 1233334333333321 1367888888887
Q ss_pred CC--CCC---Ccc-CCCCcE-EEecCCCCccccCCc---------chHhhhcCCcccEEEecCcccCCCC-----ccccc
Q 004197 227 IN--DIP---EVL-ESPQLE-FLLISPKNSFVAPNV---------SENFFKRTKKLRVLDLTRMRLLSLP-----SSIDL 285 (769)
Q Consensus 227 ~~--~l~---~~~-~~~~Lr-l~l~~~~~~~~~~~~---------~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~ 285 (769)
++ .++ ... ++..|. |.+.+|.....--.. ......+-++|||++..+|.+..-+ ..+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 62 222 111 577777 777776543210000 0122345678999999999887544 34567
Q ss_pred cCCccEEEecccccc-----ccChhhhhccCCCcEEEeecCCCc-----ccchhhccCCCCcEEEccCCcCccccC----
Q 004197 286 LVNLRTLCLDQSILG-----DIDIAIIGKLGNLEILSFWRSDIV-----HLPKALGQLTKLRLLDLTDCFHLKVIA---- 351 (769)
Q Consensus 286 l~~L~~L~L~~~~l~-----~l~p~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~~~~---- 351 (769)
.+.|+.+.+..|.|. -+ ...+..+++|+.||+..|.++ .+...+..+++|+.|++++|. +..-.
T Consensus 184 ~~~leevr~~qN~I~~eG~~al-~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~ 261 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTAL-AEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAF 261 (382)
T ss_pred ccccceEEEecccccCchhHHH-HHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHH
Confidence 788999999998765 23 466788999999999999766 344556778899999999986 33321
Q ss_pred -hhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCC
Q 004197 352 -PDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDI 407 (769)
Q Consensus 352 -~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 407 (769)
...-...++|+.|.+.+|.+..... ......+...+.|..|++.+|..+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~-------~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAA-------LALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHH-------HHHHHHHhcchhhHHhcCCccccc
Confidence 1112357899999999998763221 222245566889999999998753
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.57 E-value=1.6e-05 Score=66.93 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=78.3
Q ss_pred hhcCCcccEEEecCcccCCCCcccccc-CCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcE
Q 004197 260 FKRTKKLRVLDLTRMRLLSLPSSIDLL-VNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRL 338 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l-~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 338 (769)
+.+..+|...+|++|.++++|+.+... +-+.+|++.+|.|.++ |..+..++.|+.|+++.|.+...|..+..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 456778888899999999999887654 4799999999999999 88899999999999999999999999999999999
Q ss_pred EEccCCcCccccChh
Q 004197 339 LDLTDCFHLKVIAPD 353 (769)
Q Consensus 339 L~l~~~~~l~~~~~~ 353 (769)
|+..++. ...+|-.
T Consensus 128 Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENA-RAEIDVD 141 (177)
T ss_pred hcCCCCc-cccCcHH
Confidence 9888765 5555544
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.56 E-value=4.8e-06 Score=92.50 Aligned_cols=217 Identities=20% Similarity=0.294 Sum_probs=126.8
Q ss_pred cCCccceeeccccccccccccccccccccCCccEEEEcCC-CCCcccc--chHHhhcCCCCcEEEEccCchhhhhhhcCC
Q 004197 530 AFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENC-DELSNIF--WLSTAKCLPRLERVAVINCSKMKEIFAIGG 606 (769)
Q Consensus 530 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c-~~l~~l~--~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 606 (769)
.+|.|+.|.+.+|..+.+..... ....++.|+.|+++.| ......+ .......+++|+.|++..|..+.+......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHH-HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 47888888888887777632111 1446788999998873 3332222 112345568888888888876544332211
Q ss_pred cccccCCcccccccccc-cceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccc---cc
Q 004197 607 EADVVLPNLEALEISEI-NVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRG---LQ 682 (769)
Q Consensus 607 ~~~~~~~~L~~L~L~~~-~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~---l~ 682 (769)
...+|+|+.|.+.+| .+++-- .......+++|++|++++|..+++-.......++++|+.|.+..++. ++
T Consensus 265 --~~~c~~L~~L~l~~c~~lt~~g----l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~ 338 (482)
T KOG1947|consen 265 --ASRCPNLETLSLSNCSNLTDEG----LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLT 338 (482)
T ss_pred --HhhCCCcceEccCCCCccchhH----HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHH
Confidence 112678888888888 554320 01122367888888888888875532234456677777766555543 43
Q ss_pred eeeccccccCCcCeeee-cccCccccccCcccccccCCCccccCCCcc-eEEEecCCCc-eeeccCCCCcccccccCCCC
Q 004197 683 EIISEDRVDHVTPRFVF-QRVTTLTLQDLPELRCLYPGMHTLEWPALK-FLVVSGCDKL-KIFGADLSQNNEVDQLGIPA 759 (769)
Q Consensus 683 ~i~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~-~L~i~~C~~L-~~l~~~~~~~~~l~~l~i~~ 759 (769)
... +... .... -.+..+.+.+|+.++.+....... .... .+.+.+||.| ..+.........++.+++..
T Consensus 339 ~~~----l~~~--~~~~~d~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~ 410 (482)
T KOG1947|consen 339 DLS----LSGL--LTLTSDDLAELILRSCPKLTDLSLSYCGI--SDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSD 410 (482)
T ss_pred HHH----HHHh--hccCchhHhHHHHhcCCCcchhhhhhhhc--cCcchHHHhcCCcccchHHHHHhccCCccceEeccc
Confidence 321 1000 0111 147788888888888776654432 3333 5778888888 33333333333356666655
Q ss_pred CC
Q 004197 760 QR 761 (769)
Q Consensus 760 ~~ 761 (769)
+.
T Consensus 411 ~~ 412 (482)
T KOG1947|consen 411 CR 412 (482)
T ss_pred Cc
Confidence 53
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.32 E-value=0.00031 Score=63.62 Aligned_cols=79 Identities=29% Similarity=0.319 Sum_probs=40.6
Q ss_pred cccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch--hhccCCCCcEEEcc
Q 004197 265 KLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK--ALGQLTKLRLLDLT 342 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~ 342 (769)
....+||+.|.+..++ .+..+.+|.+|.+.+|.|+.++|.--..+++|..|.+.+|++.++-. .+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3445566666555443 34455566666666666666643333344556666666665554321 23344455555444
Q ss_pred CC
Q 004197 343 DC 344 (769)
Q Consensus 343 ~~ 344 (769)
+|
T Consensus 122 ~N 123 (233)
T KOG1644|consen 122 GN 123 (233)
T ss_pred CC
Confidence 43
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00054 Score=62.16 Aligned_cols=104 Identities=24% Similarity=0.302 Sum_probs=51.2
Q ss_pred CccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhcc-CCCCcEEEccCCcCccc---cChhhhcCCCCccE
Q 004197 288 NLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQ-LTKLRLLDLTDCFHLKV---IAPDVISSLIRLEE 363 (769)
Q Consensus 288 ~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~-l~~L~~L~l~~~~~l~~---~~~~~~~~L~~L~~ 363 (769)
+.-.+||++|.+..+ ..+..++.|.+|.+.+|+|+.+-..+.. +++|+.|.+.+|. +.. +.+ +..++.|+.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p--La~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP--LASCPKLEY 117 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcch--hccCCccce
Confidence 344555555555554 3455555556666666655555444433 3445555555543 222 222 445555555
Q ss_pred EEccCCccccceeccccccccCCchhhcCCCCccEEEEEee
Q 004197 364 LYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIK 404 (769)
Q Consensus 364 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~ 404 (769)
|.+-+|.+. .........+..+++|+.|+...-
T Consensus 118 Ltll~Npv~--------~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVE--------HKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchh--------cccCceeEEEEecCcceEeehhhh
Confidence 555555443 112223344555555555555443
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.00012 Score=70.07 Aligned_cols=105 Identities=23% Similarity=0.233 Sum_probs=56.3
Q ss_pred cccEEEecCcccCCCC--cccc-ccCCccEEEeccccccccC--hhhhhccCCCcEEEeecCCCcccchhh-ccCCCCcE
Q 004197 265 KLRVLDLTRMRLLSLP--SSID-LLVNLRTLCLDQSILGDID--IAIIGKLGNLEILSFWRSDIVHLPKAL-GQLTKLRL 338 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp--~~i~-~l~~L~~L~L~~~~l~~l~--p~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~ 338 (769)
.+..|.+.++.|...- ..|+ .+++++.|||.+|.|++.. -.-+.+|+.|++|+++.|.+..--... ..+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4445555566554322 1232 4567777777777766430 233456777788887777554211111 34567777
Q ss_pred EEccCCcCcc-ccChhhhcCCCCccEEEccCCc
Q 004197 339 LDLTDCFHLK-VIAPDVISSLIRLEELYMGNCS 370 (769)
Q Consensus 339 L~l~~~~~l~-~~~~~~~~~L~~L~~L~l~~~~ 370 (769)
|-+.+.. +. .-....+..++.++.|.++.|.
T Consensus 126 lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 126 LVLNGTG-LSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEEcCCC-CChhhhhhhhhcchhhhhhhhccch
Confidence 7766632 11 1111124566666777666663
No 64
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.05 E-value=0.00086 Score=65.59 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=43.8
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDV 186 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl 186 (769)
-..++|+|.+|+||||+++.+|++.... +|+..+|+.........+.++.+++
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence 3578999999999999999999986544 8999999876666566777777776
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=5.9e-05 Score=71.43 Aligned_cols=100 Identities=20% Similarity=0.185 Sum_probs=54.6
Q ss_pred CCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch--hhccCCCCcEEE
Q 004197 263 TKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK--ALGQLTKLRLLD 340 (769)
Q Consensus 263 l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~ 340 (769)
+.+.+.|++.||++.++. ...+++.|+.|.|+-|+|+.+ ..+..+++|+.|.|+.|.|..+-+ -+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 445556666666666542 234566666666666666666 556666666666666665554432 345555666665
Q ss_pred ccCCcCccccChh----hhcCCCCccEEE
Q 004197 341 LTDCFHLKVIAPD----VISSLIRLEELY 365 (769)
Q Consensus 341 l~~~~~l~~~~~~----~~~~L~~L~~L~ 365 (769)
+..|.....-+.+ ++.-|++|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 5554433322221 244455555554
No 66
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.88 E-value=0.0014 Score=67.16 Aligned_cols=52 Identities=15% Similarity=0.062 Sum_probs=39.5
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDV 186 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl 186 (769)
...+|+|.+|+||||||+.||+....+ +|+.++|+.......-.+.|+.+.+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsI 221 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSV 221 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHh
Confidence 467899999999999999999987655 9999999865444323455555554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.00011 Score=69.76 Aligned_cols=79 Identities=27% Similarity=0.338 Sum_probs=36.1
Q ss_pred CccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccCh-hhhcCCCCccEEEc
Q 004197 288 NLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAP-DVISSLIRLEELYM 366 (769)
Q Consensus 288 ~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~-~~~~~L~~L~~L~l 366 (769)
+.+-|+..+|.+.++ ..+.+++.|++|.|+-|+|+.+- .+..+++|++|+|..|. +.++.+ ..+.++++|++|.+
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 334445555555544 44445555555555555554442 24445555555554433 222221 11344555555554
Q ss_pred cCCc
Q 004197 367 GNCS 370 (769)
Q Consensus 367 ~~~~ 370 (769)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 4443
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.35 E-value=0.00074 Score=63.97 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=47.9
Q ss_pred cCCcccEEEecCcccC-----CCCccccccCCccEEEecccccc----ccCh-------hhhhccCCCcEEEeecCCCc-
Q 004197 262 RTKKLRVLDLTRMRLL-----SLPSSIDLLVNLRTLCLDQSILG----DIDI-------AIIGKLGNLEILSFWRSDIV- 324 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~l~----~l~p-------~~i~~L~~L~~L~l~~~~l~- 324 (769)
.+..+..+|||+|.|. .+...|.+-.+|+..+++.-... ++ | ..+-++++|+..++|.|.+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~-~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDEL-YSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHH-HHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 4667777788887765 23444556666777776653211 22 2 23445667777777776443
Q ss_pred ccch----hhccCCCCcEEEccCCc
Q 004197 325 HLPK----ALGQLTKLRLLDLTDCF 345 (769)
Q Consensus 325 ~lp~----~i~~l~~L~~L~l~~~~ 345 (769)
..|. -|.+-+.|.||.+++|.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC
Confidence 2232 34555667777766654
No 69
>PRK08118 topology modulation protein; Reviewed
Probab=96.33 E-value=0.0028 Score=58.31 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=30.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh-cCCCeEEEEE
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED-KLCDMVVFSE 170 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~-~~F~~~~~~~ 170 (769)
..|.|+|.+|+||||+|+.+++.+... -+||...|..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~ 39 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP 39 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 358899999999999999999986554 5688887643
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.002 Score=61.32 Aligned_cols=83 Identities=25% Similarity=0.398 Sum_probs=45.0
Q ss_pred hcCCcccEEEecCcccCCCCccccccCCccEEEeccc--ccc-ccChhhhhccCCCcEEEeecCCCcccc--hhhccCCC
Q 004197 261 KRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQS--ILG-DIDIAIIGKLGNLEILSFWRSDIVHLP--KALGQLTK 335 (769)
Q Consensus 261 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~--~l~-~l~p~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~ 335 (769)
..+..|..|++.+..++++- .+-.|++|++|.++.| .+. .+ +....++++|++|++++|+++.+- ..+.++.+
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l-~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGL-EVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccc-eehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34555666666655554331 2335667777777777 322 44 333444577777777777555311 12445555
Q ss_pred CcEEEccCCc
Q 004197 336 LRLLDLTDCF 345 (769)
Q Consensus 336 L~~L~l~~~~ 345 (769)
|..|++.+|.
T Consensus 118 L~~Ldl~n~~ 127 (260)
T KOG2739|consen 118 LKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCC
Confidence 6666666554
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.17 E-value=0.0034 Score=59.70 Aligned_cols=90 Identities=23% Similarity=0.337 Sum_probs=62.8
Q ss_pred cccccCCccEEEecccccc-----ccChhhhhccCCCcEEEeecC---CCc-ccc-------hhhccCCCCcEEEccCCc
Q 004197 282 SIDLLVNLRTLCLDQSILG-----DIDIAIIGKLGNLEILSFWRS---DIV-HLP-------KALGQLTKLRLLDLTDCF 345 (769)
Q Consensus 282 ~i~~l~~L~~L~L~~~~l~-----~l~p~~i~~L~~L~~L~l~~~---~l~-~lp-------~~i~~l~~L~~L~l~~~~ 345 (769)
.+..+..+..++|++|.|. .+ ...|.+-.+|+..+++.- ..+ ++| +.+-++++|+..+++.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3455778889999999876 34 455667788888888764 111 333 346778999999999887
Q ss_pred CccccChh---hhcCCCCccEEEccCCccc
Q 004197 346 HLKVIAPD---VISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 346 ~l~~~~~~---~~~~L~~L~~L~l~~~~~~ 372 (769)
.-...|+. .+++-+.|.+|.+++|...
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 44445543 3667788999988887654
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.98 E-value=0.0026 Score=60.45 Aligned_cols=62 Identities=24% Similarity=0.390 Sum_probs=30.8
Q ss_pred cCCcccEEEecCc--ccC-CCCccccccCCccEEEeccccccccC-hhhhhccCCCcEEEeecCCC
Q 004197 262 RTKKLRVLDLTRM--RLL-SLPSSIDLLVNLRTLCLDQSILGDID-IAIIGKLGNLEILSFWRSDI 323 (769)
Q Consensus 262 ~l~~Lr~L~L~~~--~i~-~lp~~i~~l~~L~~L~L~~~~l~~l~-p~~i~~L~~L~~L~l~~~~l 323 (769)
.+++|+.|+++.| ++. .++....++++|++|++++|+|+.+. -..+..+.+|..||+..|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 4556666666655 332 33333444466666666666544220 02234455555555555543
No 73
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.91 E-value=0.0076 Score=52.19 Aligned_cols=23 Identities=48% Similarity=0.641 Sum_probs=21.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
||.|.|..|+||||+|+.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999964
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.00071 Score=61.48 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=42.4
Q ss_pred hHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCC-CccccCCCcceEEEecCCCcee
Q 004197 663 MIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPG-MHTLEWPALKFLVVSGCDKLKI 741 (769)
Q Consensus 663 ~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~-~~~l~~~~L~~L~i~~C~~L~~ 741 (769)
-+.++++++.|.+.+|..+.. .++... .+.+|+|+.|+|++|+.+++-... .. .+++|+.|.+++-|.+..
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD----~~L~~l--~~~~~~L~~L~lsgC~rIT~~GL~~L~--~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDD----WCLERL--GGLAPSLQDLDLSGCPRITDGGLACLL--KLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHhccchhhhheeccccchhh----HHHHHh--cccccchheeeccCCCeechhHHHHHH--HhhhhHHHHhcCchhhhc
Confidence 345667777777777765543 222222 124577777777777777765532 22 237777777777666543
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.78 E-value=0.0047 Score=34.65 Aligned_cols=14 Identities=36% Similarity=0.294 Sum_probs=5.6
Q ss_pred ccEEEecccccccc
Q 004197 289 LRTLCLDQSILGDI 302 (769)
Q Consensus 289 L~~L~L~~~~l~~l 302 (769)
|++|++++|.++.+
T Consensus 2 L~~Ldls~n~l~~i 15 (22)
T PF00560_consen 2 LEYLDLSGNNLTSI 15 (22)
T ss_dssp ESEEEETSSEESEE
T ss_pred ccEEECCCCcCEeC
Confidence 33444444443333
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.76 E-value=0.0044 Score=34.78 Aligned_cols=22 Identities=45% Similarity=0.570 Sum_probs=18.6
Q ss_pred cccEEEecCcccCCCCcccccc
Q 004197 265 KLRVLDLTRMRLLSLPSSIDLL 286 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~~i~~l 286 (769)
+|++||+++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 77
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.76 E-value=0.017 Score=59.64 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=41.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDV 186 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl 186 (769)
..++|+|.+|.||||+++.+++....+ +|+..+|+.........+-|+.+.+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsI 220 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSV 220 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHh
Confidence 468999999999999999999976544 8999999877666556666766665
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.66 E-value=0.03 Score=49.06 Aligned_cols=106 Identities=16% Similarity=0.288 Sum_probs=48.2
Q ss_pred hHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCC
Q 004197 257 ENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLT 334 (769)
Q Consensus 257 ~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~ 334 (769)
...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+.++ +..++...+.++++|+.+.+.. .+..++. .+.+++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 44556666666666654 344443 34556666666666553 5555344556666666666654 3444433 344466
Q ss_pred CCcEEEccCCcCccccChhhhcCCCCccEEEccC
Q 004197 335 KLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGN 368 (769)
Q Consensus 335 ~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~ 368 (769)
+|+.+.+..+ +..++...+.+. +|+.+.+..
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 6666666442 445555545555 666666543
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.0017 Score=59.15 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=7.8
Q ss_pred ccCcEEeEccccccce
Q 004197 668 EQLQQLDIVNCRGLQE 683 (769)
Q Consensus 668 ~~L~~L~l~~c~~l~~ 683 (769)
++|+.|+|++|+.+++
T Consensus 151 ~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITD 166 (221)
T ss_pred cchheeeccCCCeech
Confidence 4455555555554443
No 80
>PRK06696 uridine kinase; Validated
Probab=95.26 E-value=0.029 Score=54.54 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=31.0
Q ss_pred HHHHHHhh---cCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALI---DVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~---~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..|++.+. .+...+|+|-|.+|.||||+|+.+.+.+.
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56777775 34578999999999999999999999764
No 81
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.031 Score=49.14 Aligned_cols=27 Identities=41% Similarity=0.471 Sum_probs=24.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
-|+|-||.|+||||+++.+.+.+..+.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 579999999999999999999887664
No 82
>PRK07261 topology modulation protein; Provisional
Probab=94.88 E-value=0.022 Score=52.60 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=26.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhh-hcCCCeEEEE
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIE-DKLCDMVVFS 169 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~-~~~F~~~~~~ 169 (769)
.|.|+|++|+||||+|+.+...... .-+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 4899999999999999999876432 2345666664
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.85 E-value=0.081 Score=46.25 Aligned_cols=117 Identities=15% Similarity=0.234 Sum_probs=61.2
Q ss_pred CCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCC
Q 004197 235 ESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGN 312 (769)
Q Consensus 235 ~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~ 312 (769)
.+++|+ +.+.. ....++ ...|..+.+|+.+.+.++ +..++ ..+..+..|+++.+.+ .+..++...+..+.+
T Consensus 10 ~~~~l~~i~~~~--~~~~I~---~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIG---ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp T-TT--EEEETS--T--EE----TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred CCCCCCEEEECC--CeeEeC---hhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 455666 55542 234555 677888888999998775 66664 3577787899999976 566664566778899
Q ss_pred CcEEEeecCCCcccch-hhccCCCCcEEEccCCcCccccChhhhcCCCCcc
Q 004197 313 LEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLE 362 (769)
Q Consensus 313 L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~ 362 (769)
|+.+++..+ +..++. .+.+. +|+.+.+.. .+..++...+.+.++|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 999999765 666654 45665 888888765 35667766666666653
No 84
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.48 E-value=0.036 Score=52.64 Aligned_cols=25 Identities=48% Similarity=0.642 Sum_probs=22.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
||||-|.+|+||||+|+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999997653
No 85
>PHA00729 NTP-binding motif containing protein
Probab=94.30 E-value=0.072 Score=50.80 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=44.6
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhc-C--CCeEEEEEcCCCceEehhHHHHHHHHHH
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDK-L--CDMVVFSEDGSNKFFSMHDVVRDVAISI 190 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~-~--F~~~~~~~~~~~~~~~~hdl~~dl~~~~ 190 (769)
+.+++.+...+...|.|.|..|+||||+|..+.+.....- . -+...|-.......+.+.+++..+....
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~ 77 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAI 77 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHH
Confidence 4556666677777899999999999999999998753100 0 0122332223344567778877775433
No 86
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.28 E-value=0.49 Score=51.14 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=23.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
-.+|+++|.+|+||||++..+...+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999988765433
No 87
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.47 Score=52.32 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=30.0
Q ss_pred hHHHHHHHhh----cCC--ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 120 KGLAMQTALI----DVN--VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 120 ~~~~i~~~l~----~~~--~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.++.|+|.|. ..+ =.++..||-.|+|||.|++.|.+..
T Consensus 331 VKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 331 VKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 3467777766 223 3699999999999999999999954
No 88
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.27 E-value=0.044 Score=51.51 Aligned_cols=27 Identities=44% Similarity=0.605 Sum_probs=24.2
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+.+|||-|.+|.||||+|+.+.+.+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999999654
No 89
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.24 E-value=0.047 Score=49.07 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=26.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcC
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKL 162 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~ 162 (769)
..|++|+|..|+|||||.+.+-..++.+++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~ 31 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGY 31 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCc
Confidence 468999999999999999999998876554
No 90
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.22 E-value=0.055 Score=47.91 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
.+|+|+|..|+|||||++.+.+.+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 479999999999999999999987644
No 91
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.22 E-value=0.22 Score=47.03 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=25.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhhcCCCeEE
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVV 167 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~ 167 (769)
.|+|.|-||+||||+|..+...+..++-++..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLv 34 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLV 34 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 689999999999999999777666555444443
No 92
>PRK06547 hypothetical protein; Provisional
Probab=94.16 E-value=0.074 Score=49.00 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=28.6
Q ss_pred HHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 123 AMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 123 ~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.++..+......+|+|.|..|+||||+|+.+.+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455556678899999999999999999998863
No 93
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.08 E-value=0.0029 Score=58.71 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=76.2
Q ss_pred hhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEE
Q 004197 260 FKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLL 339 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 339 (769)
+..++.-.+||++.+++-.+-..+..++.|..|+++.+.+..+ |.+++.+..++++++..|+.+..|.+.+++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 4578888999999998888878888899999999999999999 899999999999999999999999999999999999
Q ss_pred EccCCc
Q 004197 340 DLTDCF 345 (769)
Q Consensus 340 ~l~~~~ 345 (769)
++.++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 888765
No 94
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.06 E-value=0.049 Score=47.60 Aligned_cols=22 Identities=55% Similarity=0.862 Sum_probs=20.2
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~ 157 (769)
|+|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999974
No 95
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.03 E-value=0.048 Score=52.53 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.4
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+..+|+|.|.+|+|||||++.+...+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999999964
No 96
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.88 E-value=0.1 Score=46.66 Aligned_cols=37 Identities=32% Similarity=0.347 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.++...+.......+-|+|..|+||||+++.+++...
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4555555555567889999999999999999999764
No 97
>PTZ00301 uridine kinase; Provisional
Probab=93.79 E-value=0.059 Score=51.42 Aligned_cols=26 Identities=27% Similarity=0.602 Sum_probs=22.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+|||-|.+|+||||+|+.+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 36899999999999999999988653
No 98
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.74 E-value=0.038 Score=28.67 Aligned_cols=15 Identities=47% Similarity=0.572 Sum_probs=5.1
Q ss_pred CccEEEecccccccc
Q 004197 288 NLRTLCLDQSILGDI 302 (769)
Q Consensus 288 ~L~~L~L~~~~l~~l 302 (769)
+|+.|++++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 99
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.46 Score=52.21 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=31.6
Q ss_pred HHHHHHHhh----cC--CccEEEEEccCCCchHHHHHHHHHHhhhhcCCC
Q 004197 121 GLAMQTALI----DV--NVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCD 164 (769)
Q Consensus 121 ~~~i~~~l~----~~--~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~ 164 (769)
++.|.|.+. .+ +=+++..+|-.|+|||.+|+.|...+ .|.+|.
T Consensus 420 KeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL-nRkFfR 468 (906)
T KOG2004|consen 420 KERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL-NRKFFR 468 (906)
T ss_pred HHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh-CCceEE
Confidence 355666554 22 34699999999999999999999864 355554
No 100
>PRK08233 hypothetical protein; Provisional
Probab=93.65 E-value=0.057 Score=50.67 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|+|.|.+|+||||+|+.+...+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999865
No 101
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.63 E-value=0.058 Score=51.78 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=23.0
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.-.+|+|+|.+|.||||+++.+...+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34699999999999999999999854
No 102
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.63 E-value=0.047 Score=28.31 Aligned_cols=17 Identities=59% Similarity=0.831 Sum_probs=11.5
Q ss_pred CcccEEEecCcccCCCC
Q 004197 264 KKLRVLDLTRMRLLSLP 280 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp 280 (769)
++|++|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 103
>PRK07667 uridine kinase; Provisional
Probab=93.49 E-value=0.13 Score=48.60 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=28.9
Q ss_pred HHHHHHhhc--CCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALID--VNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~--~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..|++.+.. +...+|||-|..|.||||+|+.+...+.
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555552 3457999999999999999999999764
No 104
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.44 E-value=0.25 Score=46.41 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=26.7
Q ss_pred HHHHHHh---hcCCccEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 122 LAMQTAL---IDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 122 ~~i~~~l---~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
+++...+ ...+.+.+-|+|..|+|||++.+.++.....+.
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 5666666 234578999999999999999999999877663
No 105
>PF13173 AAA_14: AAA domain
Probab=93.35 E-value=0.089 Score=45.97 Aligned_cols=26 Identities=42% Similarity=0.620 Sum_probs=23.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-+++.|.|..|+||||++++++.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998755
No 106
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.34 E-value=0.65 Score=46.86 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=24.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
-++|+++|-.|+||||++..+...+..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4699999999999999999998876544
No 107
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.29 E-value=0.016 Score=59.22 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=66.8
Q ss_pred hhhHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---cchhhHHHHHHHHHHHHHHHHHHH------
Q 004197 17 APPIERRLGYLRNYNANFRNLKAEIDKLKDESRSIQHRVSE---AER---KGEKIEEKVKKWLVSANNTIEQAA------ 84 (769)
Q Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~---a~~---~~~~~~~~~~~W~~~~~~~~~~~e------ 84 (769)
.+.+..+.++.+|.+.+..........+.+....|...|++ |.+ ........+..|...++.+.....
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35677777887777775544322334455566677777665 111 111111234566666555443331
Q ss_pred --------hhhhhhhhcccccccccCCCcchhcccchhhhhhhhHHHHHHHhhcC
Q 004197 85 --------KFIDDEVTTNKRCLMGLCPNLKTRYRLSKKAETEEKGLAMQTALIDV 131 (769)
Q Consensus 85 --------d~~d~~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~l~~~ 131 (769)
-..+.++.+.++||.| |+.||.++.|.++..+. .|++++++..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~-L~~f~~~~~i~~~~li~---lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLY-LSIFPEGVPIPRERLIR---LWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHH-GGGSGTTS-EEHHHHHH---HHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhh-CcCCCCCceECHHHHHH---HHHHCCCCcc
Confidence 2225567889999999 99999999999999999 9999999864
No 108
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.21 E-value=0.098 Score=47.82 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
..+++|+|..|.|||||++.+...+..+
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 5699999999999999999999876543
No 109
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.15 E-value=0.092 Score=39.89 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+|.|.|..|.||||+++.+-+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999875
No 110
>PRK06762 hypothetical protein; Provisional
Probab=92.80 E-value=0.11 Score=47.98 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|+.|+||||+|+.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998864
No 111
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.75 E-value=0.11 Score=46.89 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
||+|+|..|+||||+++.+...+..+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999987643
No 112
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.69 E-value=0.093 Score=48.90 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=21.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
||+|.|.+|.||||+|+.+.+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999964
No 113
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.68 E-value=2.6 Score=43.97 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=23.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-.++.++|..|+||||++..+.....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999988754
No 114
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.62 E-value=0.093 Score=50.69 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+|||.|..|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998654
No 115
>PF05729 NACHT: NACHT domain
Probab=92.55 E-value=0.14 Score=47.06 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=26.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCC
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCD 164 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~ 164 (769)
+++-|.|.+|+||||+++.+..+........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~ 31 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPP 31 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCccc
Confidence 5788999999999999999999876655433
No 116
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.50 E-value=0.12 Score=48.64 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+..+|.|+|..|+||||+|+.+.+.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998753
No 117
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.41 E-value=0.69 Score=49.05 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
..+|.++|..|+||||++..+...+..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5799999999999999999998766533
No 118
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.33 E-value=0.12 Score=48.22 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=21.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+|+|.|..|+||||+|+.+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998754
No 119
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.31 E-value=0.12 Score=48.12 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=23.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+|+|=||=|+||||||+.+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999875
No 120
>PRK03839 putative kinase; Provisional
Probab=92.26 E-value=0.13 Score=48.07 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=21.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.|.|.|+.|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999965
No 121
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.26 E-value=0.11 Score=49.61 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
||||.|..|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998854
No 122
>PRK04040 adenylate kinase; Provisional
Probab=92.18 E-value=0.14 Score=48.07 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=22.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|+|+.|+||||+++.+.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998865
No 123
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.06 E-value=0.2 Score=44.79 Aligned_cols=28 Identities=36% Similarity=0.551 Sum_probs=24.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
.||=+.|..|.||||+|+.+...+..+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4788999999999999999999876543
No 124
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.93 E-value=0.23 Score=50.08 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=25.2
Q ss_pred hcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 129 IDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 129 ~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+...-.++.|+|..|+||||+++.+++...
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 344456899999999999999999999754
No 125
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.87 E-value=1.9 Score=46.20 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-+++.++|.+|+||||++..+...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36999999999999999888877654
No 126
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.83 E-value=0.18 Score=49.37 Aligned_cols=37 Identities=32% Similarity=0.376 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+.|.+.+..+....+.|+|..|+|||+|++.+.+...
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 5666766666678999999999999999999999753
No 127
>PRK00625 shikimate kinase; Provisional
Probab=91.71 E-value=0.16 Score=46.80 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.|-++||.|+||||+++.+.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998864
No 128
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.66 E-value=0.17 Score=47.04 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-.+|.+.|+.|.||||+|+.+++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999764
No 129
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.60 E-value=2.3 Score=45.96 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=24.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
-.|++++|-.|+||||++..+...+..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~ 283 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR 283 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh
Confidence 3699999999999999999999876433
No 130
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=91.52 E-value=0.2 Score=52.92 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEE
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFS 169 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~ 169 (769)
+.+...+... +.|-++|+.|+||||+|+.+.+.......|+.+.|+
T Consensus 185 e~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V 230 (459)
T PRK11331 185 ETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV 230 (459)
T ss_pred HHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE
Confidence 4555555543 467789999999999999999987655667766665
No 131
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=91.47 E-value=0.18 Score=48.46 Aligned_cols=30 Identities=37% Similarity=0.453 Sum_probs=24.8
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcC
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKL 162 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~ 162 (769)
...|-++||+|.||||..+.++.....+..
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 457889999999999999999997654433
No 132
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.44 E-value=0.2 Score=49.87 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=25.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
++|+|+|.+|+|||||+..+-..+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 5899999999999999999999887664
No 133
>PRK06217 hypothetical protein; Validated
Probab=91.42 E-value=0.16 Score=47.55 Aligned_cols=35 Identities=29% Similarity=0.230 Sum_probs=26.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhhcCC--CeEEEEE
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIEDKLC--DMVVFSE 170 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~~~F--~~~~~~~ 170 (769)
.|.|.|..|.||||+|+.+.+.+.. .+| |...|..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~~ 39 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWLP 39 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeecc
Confidence 4899999999999999999987532 233 4455543
No 134
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.41 E-value=1.4 Score=45.55 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=23.7
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
.-++|.++|..|+||||++..+......
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~ 232 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLK 232 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999998876543
No 135
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=91.32 E-value=0.5 Score=50.97 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----chhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccCC
Q 004197 29 NYNANFRNLKAEIDKLKDESRSIQHRVSEAERK-----GEKIEEKVKKWLVSANNTIEQAAKFIDDEVTTNKRCLMGLCP 103 (769)
Q Consensus 29 ~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~-----~~~~~~~~~~W~~~~~~~~~~~ed~~d~~~~~~~~c~~~~~~ 103 (769)
|-+++|.+-+=++-+.+...+-|.+.=+.+.+. .......+..|..++.++.-.+|-.+| ||.+--
T Consensus 102 FT~RAflNGk~DL~qaEav~dlI~a~t~~~~~~A~~~l~G~ls~~~~~~r~~l~~~~a~iea~iD-f~ee~~-------- 172 (442)
T TIGR00450 102 FTQRAFLNGKMDLTQAEAINELILAPNNKVKDIALNKLAGELDQKIEAIRKSLLQLLAQVEVNID-YEEDDD-------- 172 (442)
T ss_pred hhHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHeeEECC-cCCCCc--------
Confidence 344555554555555555555555443332221 123356788899998888888887764 222100
Q ss_pred Ccchhcccchhhhhh-hhHHHHHHHh----hcCCccEEEEEccCCCchHHHHHHHHHH
Q 004197 104 NLKTRYRLSKKAETE-EKGLAMQTAL----IDVNVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 104 ~~~~~~~i~~~~~~~-~~~~~i~~~l----~~~~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
+.. .+..++... .+-+.+++.. ..+ --.|.|+|.+|+|||||.+.+.+.
T Consensus 173 --~~~-~~~~~l~~~~~~l~~ll~~~~~~~~~~-g~kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 173 --EQD-SLNQLLLSIIAELKDILNSYKLEKLDD-GFKLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred --cHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCEEEEECCCCCcHHHHHHHHhCC
Confidence 000 111111111 0001222211 112 235789999999999999998874
No 136
>PRK14974 cell division protein FtsY; Provisional
Probab=91.27 E-value=2.7 Score=43.32 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=23.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
..+|.++|..|+||||++..+...+..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999988888876553
No 137
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.26 E-value=0.21 Score=44.60 Aligned_cols=22 Identities=45% Similarity=0.671 Sum_probs=19.9
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
||-+.|..|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999875
No 138
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.19 E-value=0.26 Score=44.64 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=23.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
.+|+|+|..|.||||+++.+...+..+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999976543
No 139
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.09 E-value=0.18 Score=47.93 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.++||+|-+|.|||||++.+.-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 140
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.06 E-value=0.24 Score=46.01 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-.+|.+.|..|+||||+|+.+...+.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999764
No 141
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.04 E-value=2.7 Score=44.69 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=22.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-.+|+++|-.|+||||++..+.....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~ 216 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAV 216 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999998877543
No 142
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.97 E-value=0.37 Score=41.87 Aligned_cols=35 Identities=29% Similarity=0.202 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+++.+.. -.+|.+.|.-|.||||+++.+...+.
T Consensus 13 ~~l~~~l~~--~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 13 KAFAKPLDF--GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHhCCC--CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 444544433 34899999999999999999999753
No 143
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.87 E-value=0.38 Score=46.99 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.7
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+...+|||.|..|.|||||++.+...+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4577999999999999999999998654
No 144
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.77 E-value=0.21 Score=44.78 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
||.|.|..|+||||+|+.+-..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999864
No 145
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=90.72 E-value=0.24 Score=49.99 Aligned_cols=28 Identities=39% Similarity=0.599 Sum_probs=23.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
+.|+|+|-||+||||++-.+.-.+..++
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G 28 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG 28 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC
Confidence 4789999999999999998888766443
No 146
>PRK13236 nitrogenase reductase; Reviewed
Probab=90.67 E-value=0.28 Score=49.98 Aligned_cols=31 Identities=39% Similarity=0.547 Sum_probs=25.7
Q ss_pred cCCccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 130 DVNVSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 130 ~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
+++.+||.+.|-||+||||.+-.+.-.+..+
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 5678999999999999999888877765543
No 147
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.59 E-value=0.5 Score=46.08 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.++........|-++|..|+||||+|+.++++..
T Consensus 27 ~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444443344567889999999999999999999754
No 148
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=90.54 E-value=0.24 Score=46.27 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.++.|.|..|+||||+++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998864
No 149
>PRK00131 aroK shikimate kinase; Reviewed
Probab=90.51 E-value=0.25 Score=45.82 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...|-++|+.|.||||+|+.+.+.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999965
No 150
>PRK06893 DNA replication initiation factor; Validated
Probab=90.45 E-value=0.53 Score=45.89 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=23.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
...+-+||..|+|||+|++.+.++...
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999998653
No 151
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.42 E-value=1.5 Score=51.32 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.++-++|-.|+|||++|+.+.+..
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999975
No 152
>PRK13695 putative NTPase; Provisional
Probab=90.35 E-value=0.44 Score=44.24 Aligned_cols=25 Identities=48% Similarity=0.603 Sum_probs=22.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
.|+|.|..|+||||+++.+++.+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987654
No 153
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=90.33 E-value=0.62 Score=46.07 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=35.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAI 188 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~ 188 (769)
.-++|+|-.|.|||||++.+++.... +|+..++..-...+.-.++++++++-.
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 46799999999999999999996543 444444432222233456777776643
No 154
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=90.13 E-value=4.2 Score=46.06 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=28.4
Q ss_pred HHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 124 MQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 124 i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
+...+.......+.|+|..|+||||+|+.+++......
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~ 203 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLK 203 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhcc
Confidence 34444444456799999999999999999998764433
No 155
>PRK06526 transposase; Provisional
Probab=90.01 E-value=1.3 Score=43.82 Aligned_cols=46 Identities=24% Similarity=0.192 Sum_probs=31.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAI 188 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~ 188 (769)
-.-+-++|.+|+|||+||..+..+...++. ++....+.+++.++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~----------~v~f~t~~~l~~~l~~ 143 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGH----------RVLFATAAQWVARLAA 143 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCC----------chhhhhHHHHHHHHHH
Confidence 345789999999999999999987653221 1222456666666643
No 156
>PLN02348 phosphoribulokinase
Probab=90.00 E-value=0.45 Score=49.42 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=30.5
Q ss_pred HHHHHHhhc-CCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALID-VNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~-~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.|+.....+ ++..+|||-|-+|.||||+|+.+.+.+.
T Consensus 37 ~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 37 SSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred HHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 566666664 3567999999999999999999999764
No 157
>PRK03846 adenylylsulfate kinase; Provisional
Probab=89.93 E-value=0.43 Score=45.40 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.9
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.-.+|.|+|..|.||||+|+.+...+.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998654
No 158
>PRK13975 thymidylate kinase; Provisional
Probab=89.89 E-value=0.27 Score=46.68 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=22.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..|.|.|+.|+||||+|+.+.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999999764
No 159
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=89.88 E-value=0.25 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.6
Q ss_pred CccEEEEEccCCCchHHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
...+|||.|-.|+||||+|+.+-.-
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999877654
No 160
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=89.86 E-value=0.34 Score=49.07 Aligned_cols=27 Identities=41% Similarity=0.560 Sum_probs=22.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
++|+|+|-||+||||++-.+.-.+..+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~ 28 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAES 28 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence 579999999999999998888776533
No 161
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=89.85 E-value=0.26 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
||-|+|..|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998854
No 162
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.82 E-value=0.012 Score=54.83 Aligned_cols=92 Identities=14% Similarity=0.026 Sum_probs=78.5
Q ss_pred CCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhc
Q 004197 278 SLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVIS 356 (769)
Q Consensus 278 ~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~ 356 (769)
.+| ..|....+-..||++.+.+..+ -..++.++.|..||++.+.+..+|..++++..++++.+..|. ....|.. .+
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-cc
Confidence 444 4566778889999999998888 678899999999999999999999999999999999887765 7888988 89
Q ss_pred CCCCccEEEccCCccc
Q 004197 357 SLIRLEELYMGNCSIE 372 (769)
Q Consensus 357 ~L~~L~~L~l~~~~~~ 372 (769)
+++.+++++..++.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999999988777654
No 163
>PRK13947 shikimate kinase; Provisional
Probab=89.74 E-value=0.3 Score=45.19 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-|.|+|+.|+||||+|+.+-+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999865
No 164
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.73 E-value=4 Score=41.85 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.3
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
...+|+++|..|+||||++..+...+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3579999999999999999999887653
No 165
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=89.67 E-value=1.5 Score=38.52 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHH--HHHHHHH
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTT--LVKEFAR 155 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTt--la~~v~~ 155 (769)
+-++|.|..++-.+|||-||.-+|||. .|..||.
T Consensus 43 DFmaEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcA 78 (192)
T PF11868_consen 43 DFMAELFKEEGHKLIGIRGMPRVGKTESIVAASVCA 78 (192)
T ss_pred HHHHHHHHhcCceEEeecCCCccCchhHHHHHhhhc
Confidence 688899999999999999999999984 4444554
No 166
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=89.64 E-value=0.37 Score=46.42 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=21.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
++|+|.|-||+||||++-.+...+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 57999999999999988888776553
No 167
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=89.58 E-value=0.3 Score=40.98 Aligned_cols=24 Identities=50% Similarity=0.811 Sum_probs=20.2
Q ss_pred EEEEccCCCchHHHHHHHHHHhhh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
|-|+|.+|+|||++|+.+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999998887553
No 168
>PRK13949 shikimate kinase; Provisional
Probab=89.58 E-value=0.31 Score=44.87 Aligned_cols=23 Identities=48% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-|.|+|+.|.||||+++.+.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999864
No 169
>PRK00300 gmk guanylate kinase; Provisional
Probab=89.57 E-value=0.31 Score=46.75 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=22.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.+|+|+|..|+||||+++.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999853
No 170
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.56 E-value=0.33 Score=43.97 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~ 157 (769)
|.++|+.|.||||+|+.+...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998865
No 171
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.55 E-value=4.4 Score=46.32 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-+||+++|-.|+||||++..+...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 36999999999999999888887654
No 172
>PRK09183 transposase/IS protein; Provisional
Probab=89.55 E-value=1.4 Score=43.82 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.|+|-.|+|||+||..+.....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4677999999999999999988654
No 173
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=89.53 E-value=0.37 Score=48.62 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=22.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
++|+|+|-||+||||++-.+.-.+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALST 27 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 58899999999999999888876643
No 174
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=89.53 E-value=0.3 Score=44.77 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEccCCCchHHHHHHHHHHhhh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
|-|-|..|+||||+++.+.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 578899999999999999998753
No 175
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=89.49 E-value=0.29 Score=45.80 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
++|.|+|..|+||||+++.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999984
No 176
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=89.47 E-value=0.33 Score=40.27 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=19.2
Q ss_pred cEEEEEccCCCchHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFA 154 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~ 154 (769)
..++|+|..|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 578999999999999999975
No 177
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.43 E-value=0.3 Score=45.92 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.++.|+|..|.||||+++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999774
No 178
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=89.40 E-value=0.81 Score=43.23 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=34.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHHHHhhc
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAISIAFR 193 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~~~~~~ 193 (769)
..+|-|.|.+|+||||+|+.+.++.. ...+..-|.+|+........
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~---------------~~~~~~~D~~r~~~r~~~~~ 48 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA---------------IDIVLSGDYLREFLRPYVDD 48 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC---------------CeEEehhHHHHHHHHHhcCC
Confidence 35899999999999999999998531 11245678888877655543
No 179
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=89.32 E-value=0.42 Score=46.02 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
++|+|+|..|+||||++..+...+..+
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~ 28 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKER 28 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhC
Confidence 689999999999999999999987643
No 180
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.30 E-value=0.29 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
-.++|+||-+|.||||+|+.+-.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc
Confidence 46899999999999999999987
No 181
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=89.30 E-value=0.36 Score=42.21 Aligned_cols=26 Identities=42% Similarity=0.546 Sum_probs=20.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-+++-|+|-.|+|||++++.+.++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 35788999999999999999999754
No 182
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.26 E-value=0.32 Score=43.35 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=21.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.|+||||-+|.|||||...+-..+
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl 56 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRL 56 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhccc
Confidence 489999999999999999888754
No 183
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=89.20 E-value=0.39 Score=44.40 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...|.|+|+.|.||||+|+.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3468999999999999999999864
No 184
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.18 E-value=0.72 Score=45.19 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.++..+........+-|+|..|+|||+|++.+.+...
T Consensus 34 ~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 34 AALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444444344456889999999999999999999755
No 185
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=89.16 E-value=0.45 Score=45.61 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=25.0
Q ss_pred cCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 130 DVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 130 ~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+.++++|+++|..|.|||||.+.+....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999998864
No 186
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=89.09 E-value=0.43 Score=42.45 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|+.|+|..|+||||+.+.+-..+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999988887765
No 187
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.08 E-value=1.7 Score=46.57 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=40.1
Q ss_pred HHHHHHhh----cCCccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHHHHh
Q 004197 122 LAMQTALI----DVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAISIA 191 (769)
Q Consensus 122 ~~i~~~l~----~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~~~~ 191 (769)
+.+...+. ......+-|+|..|+||||+++.++++.......-..+++..... ....+++.++...+.
T Consensus 40 ~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~--~~~~~~~~~i~~~l~ 111 (394)
T PRK00411 40 EELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID--RTRYAIFSEIARQLF 111 (394)
T ss_pred HHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC--CCHHHHHHHHHHHhc
Confidence 45555542 334456789999999999999999998765442222333332211 123455555555544
No 188
>PRK13946 shikimate kinase; Provisional
Probab=89.06 E-value=0.37 Score=45.19 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+.|.++|+.|+||||+|+.+.+.+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999999999965
No 189
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=89.04 E-value=0.92 Score=43.05 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=34.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAI 188 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~ 188 (769)
..|.|=|..|+||||.++.+++.+..+.. .+.+...... ..+...+|++..
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~--~v~~trEP~~--~~ige~iR~~ll 54 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGI--KVVLTREPGG--TPIGEKIRELLL 54 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEeCCCC--ChHHHHHHHHHc
Confidence 36889999999999999999998776655 4444432222 345555555543
No 190
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.01 E-value=0.3 Score=28.56 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=9.8
Q ss_pred CCCcEEEeecCCCcccchh
Q 004197 311 GNLEILSFWRSDIVHLPKA 329 (769)
Q Consensus 311 ~~L~~L~l~~~~l~~lp~~ 329 (769)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 191
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.01 E-value=0.3 Score=28.56 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=9.8
Q ss_pred CCCcEEEeecCCCcccchh
Q 004197 311 GNLEILSFWRSDIVHLPKA 329 (769)
Q Consensus 311 ~~L~~L~l~~~~l~~lp~~ 329 (769)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 192
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=88.98 E-value=0.46 Score=38.77 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
++.+.|.+|+||||++..+...+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999987653
No 193
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=88.93 E-value=0.34 Score=45.91 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=22.3
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+.+.-+=.||-.|.||||||+-|.++..
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred CCcceEEEECCCccchhHHHHHHHhccC
Confidence 3467788999999999999999999754
No 194
>PLN02796 D-glycerate 3-kinase
Probab=88.92 E-value=0.38 Score=49.06 Aligned_cols=26 Identities=35% Similarity=0.328 Sum_probs=23.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.-+|||.|..|.||||+++.+...+.
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 45899999999999999999998654
No 195
>PLN02200 adenylate kinase family protein
Probab=88.91 E-value=0.35 Score=47.15 Aligned_cols=25 Identities=28% Similarity=0.193 Sum_probs=22.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|.|.|+.|+||||+|+.+.+.+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998753
No 196
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=88.91 E-value=0.42 Score=48.11 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=22.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
++|+|.|-||+||||++-.+...+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~ 27 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE 27 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh
Confidence 57889999999999999988887653
No 197
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.91 E-value=0.35 Score=28.30 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=9.9
Q ss_pred CCccEEEecccccccc
Q 004197 287 VNLRTLCLDQSILGDI 302 (769)
Q Consensus 287 ~~L~~L~L~~~~l~~l 302 (769)
++|++|+|++|.++.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666666
No 198
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.91 E-value=0.35 Score=28.30 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=9.9
Q ss_pred CCccEEEecccccccc
Q 004197 287 VNLRTLCLDQSILGDI 302 (769)
Q Consensus 287 ~~L~~L~L~~~~l~~l 302 (769)
++|++|+|++|.++.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666666
No 199
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=88.89 E-value=0.48 Score=44.78 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
+||.+||..|+||||.+-.+...+..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 689999999999998888888776654
No 200
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=88.86 E-value=0.36 Score=42.63 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+++|+|..|.|||||.+.+....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 589999999999999999988743
No 201
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=88.86 E-value=0.39 Score=50.71 Aligned_cols=27 Identities=41% Similarity=0.544 Sum_probs=24.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
-||+|+|..|+|||||++.+...+..+
T Consensus 6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 6 FEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 489999999999999999999987644
No 202
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=88.76 E-value=0.47 Score=45.13 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=22.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+|.|.|..|+||||+++.+.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999875
No 203
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.76 E-value=0.34 Score=42.77 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.4
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.|.|+|..|+||||+++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999853
No 204
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=88.73 E-value=0.36 Score=43.52 Aligned_cols=22 Identities=50% Similarity=0.702 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
+|-+.|..|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999999885
No 205
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.70 E-value=4.8 Score=42.40 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
..+|.++|-.|+||||.+..+...+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~ 200 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGI 200 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 579999999999999999998876553
No 206
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=88.70 E-value=0.46 Score=49.87 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
+||+|+|..|+|||||++.+-..+..+.
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG 29 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARG 29 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 6899999999999999999999876544
No 207
>PTZ00202 tuzin; Provisional
Probab=88.61 E-value=12 Score=39.79 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=32.2
Q ss_pred ccchhhhhhhhHHHHHHHhhcC---CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 110 RLSKKAETEEKGLAMQTALIDV---NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 110 ~i~~~~~~~~~~~~i~~~l~~~---~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.+|+... .|+...+-+. -.+++.|.|..|.||||+++.+....
T Consensus 264 FVGReaEl----a~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 264 FVSREAEE----SWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCcHHHH----HHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 34555555 6777666532 24599999999999999999998743
No 208
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.60 E-value=0.22 Score=29.23 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=14.6
Q ss_pred CCCcceEEEecCCCceee
Q 004197 725 WPALKFLVVSGCDKLKIF 742 (769)
Q Consensus 725 ~~~L~~L~i~~C~~L~~l 742 (769)
|++|+.|++++|++++.-
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 578899999999988753
No 209
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=88.59 E-value=0.43 Score=40.87 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=19.7
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~ 157 (769)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999998853
No 210
>PRK06851 hypothetical protein; Provisional
Probab=88.57 E-value=7.6 Score=40.46 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=30.2
Q ss_pred HHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 123 AMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 123 ~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
...+-+.++--+++-|-|..|+||||+++.++.....++
T Consensus 204 s~~~~l~~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G 242 (367)
T PRK06851 204 DFVPSLTEGVKNRYFLKGRPGTGKSTMLKKIAKAAEERG 242 (367)
T ss_pred hhHHhHhcccceEEEEeCCCCCcHHHHHHHHHHHHHhCC
Confidence 344444444467899999999999999999999876554
No 211
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=88.56 E-value=0.45 Score=44.20 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
++|-+.|..|+||||+|+.+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578999999999999999998863
No 212
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.55 E-value=1 Score=45.33 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=26.7
Q ss_pred cCCccEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 130 DVNVSIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 130 ~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
.+.+..+-.||-.|.||||||+.+.+..+..+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S 190 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS 190 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc
Confidence 45577788999999999999999999765554
No 213
>PRK04182 cytidylate kinase; Provisional
Probab=88.53 E-value=0.42 Score=44.62 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+|.|.|+.|.||||+|+.+.+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999998854
No 214
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.52 E-value=0.44 Score=41.62 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~ 157 (769)
|-++|..|.||||+|+.+.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 4589999999999999999975
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=88.52 E-value=0.38 Score=42.51 Aligned_cols=25 Identities=40% Similarity=0.503 Sum_probs=22.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.|+|..|+||||+++.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4788999999999999999998654
No 216
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=88.51 E-value=0.47 Score=42.50 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=21.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
+|++.|.+|+||||++..+......+
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999998765433
No 217
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=88.43 E-value=0.36 Score=41.19 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=19.4
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 218
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=88.41 E-value=1.7 Score=50.56 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.++.++|-.|+||||+|+.+....
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999854
No 219
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.38 E-value=2.4 Score=41.90 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=44.4
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAISIAF 192 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~~~~~ 192 (769)
..+++++. ...-+-++|-.|+|||.||.++.+++. +.-+ ++..+.+.|++.++......
T Consensus 96 ~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~---------sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 96 ASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI---------SVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred HHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC---------eEEEEEHHHHHHHHHHHHhc
Confidence 44555555 455678999999999999999999987 4322 44457899999999776663
No 220
>PRK14530 adenylate kinase; Provisional
Probab=88.35 E-value=0.46 Score=45.92 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.|.|+|..|+||||+|+.+...+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998854
No 221
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=88.21 E-value=0.74 Score=45.90 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 123 AMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 123 ~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..-+.|.+.+..+|.|+|..|.|||||++.+.+.+.
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344555677899999999999999999999998654
No 222
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=88.11 E-value=0.49 Score=50.13 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=27.2
Q ss_pred HHHHhhcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 124 MQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 124 i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
|.......-++.|+|+|..|.|||||++.+.+.+
T Consensus 210 i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 210 IPTEVRPFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred cCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3333345568899999999999999999999853
No 223
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=87.95 E-value=0.55 Score=47.73 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=22.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
++|+|+|-||+||||+|-.+...+..
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~ 26 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAE 26 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999998887654
No 224
>PRK13948 shikimate kinase; Provisional
Probab=87.94 E-value=0.51 Score=43.88 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+.|.++||.|+||||+++.+.+.+
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999998864
No 225
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=87.91 E-value=0.49 Score=43.71 Aligned_cols=22 Identities=45% Similarity=0.609 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
+|.|.|..|+||||+|+.+-+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999875
No 226
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=87.90 E-value=0.54 Score=47.43 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
++|+|.|-||+||||++-.+.-.+.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La 26 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLA 26 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHH
Confidence 6899999999999998888777654
No 227
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=87.86 E-value=0.5 Score=43.82 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=22.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.++.|+|..|.||||+++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998643
No 228
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=87.84 E-value=0.49 Score=42.55 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
||-|+|..|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998654
No 229
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=87.84 E-value=0.54 Score=47.26 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+|++.|-||+||||++-.+.-.+.
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La 25 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFA 25 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHH
Confidence 588889999999998888776554
No 230
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=87.64 E-value=0.68 Score=39.39 Aligned_cols=24 Identities=46% Similarity=0.703 Sum_probs=21.2
Q ss_pred EEEEccCCCchHHHHHHHHHHhhh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
|.+.|.||+||||++..+...+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~ 25 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAE 25 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 231
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=87.52 E-value=0.55 Score=45.98 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
||||.|-+|.||||+++.+.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 232
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=87.34 E-value=0.57 Score=41.48 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+|.|-|..|.||||+|+.+.+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999999753
No 233
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=87.33 E-value=0.53 Score=44.41 Aligned_cols=23 Identities=43% Similarity=0.557 Sum_probs=19.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
..+||+.|+-|+||||.|+..-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999998877665
No 234
>PRK07933 thymidylate kinase; Validated
Probab=87.28 E-value=0.67 Score=44.52 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=24.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
.|.|-|+.|+||||+++.+.+.+..++
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g 28 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARG 28 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 689999999999999999999887553
No 235
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=87.27 E-value=1.1 Score=45.87 Aligned_cols=39 Identities=31% Similarity=0.529 Sum_probs=30.3
Q ss_pred HHHHHHhh--cCCccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 122 LAMQTALI--DVNVSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 122 ~~i~~~l~--~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
.++++.+. ..+..+|||.|..|+||||+++.+...+..+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 45555554 3457799999999999999999988876533
No 236
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=87.27 E-value=0.45 Score=48.08 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
++|+|.|-||+||||++-.+.-.+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La 27 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMA 27 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 6899999999999999988777654
No 237
>PRK13768 GTPase; Provisional
Probab=87.25 E-value=0.65 Score=46.04 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=21.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.++.|.|.+|+||||++..+...+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~ 27 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLE 27 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHH
Confidence 5789999999999999998887664
No 238
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=87.16 E-value=1.3 Score=41.81 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEE
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFS 169 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~ 169 (769)
...++.+. +..++.+.|..|.|||.||-...-+....+.++..+++
T Consensus 10 ~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 10 KFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp HHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred HHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45566666 46689999999999999999999887777888888776
No 239
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=87.13 E-value=0.61 Score=43.12 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+.|.|+|+.|.||||+|+.+-+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999864
No 240
>PLN02318 phosphoribulokinase/uridine kinase
Probab=87.10 E-value=0.85 Score=49.90 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.8
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
++..+|||.|-.|.||||+|+.+....
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 457899999999999999999998753
No 241
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=87.05 E-value=1.1 Score=46.08 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHHhh------cCCccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 122 LAMQTALI------DVNVSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 122 ~~i~~~l~------~~~~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
+.+++++. ....+++.++|..|.||||+|+.+.+.+..
T Consensus 61 ~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 61 ERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45555554 224689999999999999999999997643
No 242
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=87.02 E-value=0.58 Score=43.33 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.|-|.|.+|.||||+|+.+-+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999997
No 243
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=86.99 E-value=0.52 Score=43.15 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=17.6
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|.|.|-.|.|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999985
No 244
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.91 E-value=0.71 Score=47.95 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.++|+++|.+|+||||++..+...+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 47999999999999999999987664
No 245
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=86.86 E-value=0.57 Score=44.71 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.3
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
..++|+|.+|+|||||...+.-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999886
No 246
>PRK08181 transposase; Validated
Probab=86.85 E-value=13 Score=37.00 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=32.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAI 188 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~ 188 (769)
.-+-++|-.|+|||.||..+.+....++ . .+..+.+.+++.++..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g--~--------~v~f~~~~~L~~~l~~ 151 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENG--W--------RVLFTRTTDLVQKLQV 151 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcC--C--------ceeeeeHHHHHHHHHH
Confidence 4589999999999999999999765322 1 2233567777777743
No 247
>PRK05439 pantothenate kinase; Provisional
Probab=86.84 E-value=0.57 Score=47.43 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.9
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..-+|||-|-.|+||||+|+.+...+
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46699999999999999999988754
No 248
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=86.81 E-value=0.48 Score=43.40 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.4
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~ 157 (769)
|.++|..|+||||+|+.+-..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999864
No 249
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=86.75 E-value=0.53 Score=43.89 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
+|+|.|+.|+||||+++.+-+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 250
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=86.70 E-value=0.52 Score=46.08 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.2
Q ss_pred EEccCCCchHHHHHHHHHHhhhh
Q 004197 138 VYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 138 I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
|+|++|+||||+.+.+.+.....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999976533
No 251
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=86.68 E-value=0.59 Score=48.77 Aligned_cols=26 Identities=35% Similarity=0.309 Sum_probs=22.6
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..-+|||.|..|.||||+++.+...+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999997644
No 252
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=86.66 E-value=0.45 Score=46.08 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.-|.|+|.+|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 357899999999999999998853
No 253
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=86.60 E-value=0.53 Score=47.13 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+|||.|-.|.||||+++.+..-+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998744
No 254
>PRK00698 tmk thymidylate kinase; Validated
Probab=86.55 E-value=0.74 Score=44.04 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
.+|.|.|..|+||||+++.+.+.+...
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999976543
No 255
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=86.47 E-value=0.73 Score=46.29 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
||+|.|-||+||||++-.+.-.+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la 25 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALA 25 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Confidence 688999999999998888777654
No 256
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=86.46 E-value=0.59 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 257
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.45 E-value=0.62 Score=43.40 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 258
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.29 E-value=0.64 Score=44.05 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.8
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
=.+|+|+|.+|.|||||.+.+..
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999877
No 259
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=86.28 E-value=0.78 Score=48.29 Aligned_cols=29 Identities=34% Similarity=0.596 Sum_probs=26.0
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
..++|+|+|..|+||||+++.+...+..+
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~ 232 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIAR 232 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999987654
No 260
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=86.24 E-value=0.89 Score=45.49 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=23.5
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+.++|.++|.+|+||||++..+...+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999887664
No 261
>PRK15453 phosphoribulokinase; Provisional
Probab=86.22 E-value=0.76 Score=45.41 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.6
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...+|+|-|-+|.||||+|+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998754
No 262
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=86.19 E-value=3.7 Score=44.57 Aligned_cols=117 Identities=13% Similarity=0.137 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c-chhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccCCC
Q 004197 30 YNANFRNLKAEIDKLKDESRSIQHRVSEAER----K-GEKIEEKVKKWLVSANNTIEQAAKFIDDEVTTNKRCLMGLCPN 104 (769)
Q Consensus 30 ~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~----~-~~~~~~~~~~W~~~~~~~~~~~ed~~d~~~~~~~~c~~~~~~~ 104 (769)
-+++|.+-+=++-+.+...+-|.+.=+.+.+ . .......+..|..++.++.-.+|-.+|- |.+...
T Consensus 111 t~RAflngk~dL~qaEai~~li~a~t~~~~~~al~~l~G~l~~~~~~~r~~l~~~~a~iea~iDf-~ee~~~-------- 181 (449)
T PRK05291 111 TKRAFLNGKLDLTQAEAIADLIDAKTEAAARLALRQLQGALSKLINELREELLELLALVEAAIDF-PEEDIE-------- 181 (449)
T ss_pred hHHHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHheEEccC-CCCCcc--------
Confidence 3444544444555555555544433332211 1 1223567889999888888877766642 221100
Q ss_pred cchhcccchhhhhh-hhHHHHHHHh-----hcCCccEEEEEccCCCchHHHHHHHHHH
Q 004197 105 LKTRYRLSKKAETE-EKGLAMQTAL-----IDVNVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 105 ~~~~~~i~~~~~~~-~~~~~i~~~l-----~~~~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
......+.+++... ++-+.+.+.- ..+. -.|+|+|..|+|||||.+.+...
T Consensus 182 ~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~-~kV~ivG~~nvGKSSLln~L~~~ 238 (449)
T PRK05291 182 FLSDEKILEKLEELIAELEALLASARQGEILREG-LKVVIAGRPNVGKSSLLNALLGE 238 (449)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CEEEEECCCCCCHHHHHHHHhCC
Confidence 00011122222222 0001111111 1122 36899999999999999988763
No 263
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=86.16 E-value=0.58 Score=46.94 Aligned_cols=26 Identities=42% Similarity=0.672 Sum_probs=22.5
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
++|+|.|-||+||||++..+...+..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~ 28 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSN 28 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 68999999999999999998886653
No 264
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=86.08 E-value=0.62 Score=43.16 Aligned_cols=24 Identities=46% Similarity=0.634 Sum_probs=21.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|..|.|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 358999999999999999998874
No 265
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=86.07 E-value=1.2 Score=45.83 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
...+-++|..|+|||++|+.+.++..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 55677999999999999999998653
No 266
>PRK08939 primosomal protein DnaI; Reviewed
Probab=86.06 E-value=1.6 Score=44.42 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=36.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAISIA 191 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~~~~ 191 (769)
..-+-++|-.|+|||+||..+.+++..++ . .+..+.+.++++++.....
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g-~---------~v~~~~~~~l~~~lk~~~~ 204 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKG-V---------SSTLLHFPEFIRELKNSIS 204 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC-C---------CEEEEEHHHHHHHHHHHHh
Confidence 45688999999999999999999876322 1 2233678888888876554
No 267
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=86.05 E-value=0.62 Score=42.79 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=20.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.-||||-|+.-.||||||+..-.-
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~ 27 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRF 27 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHH
Confidence 358999999999999999988773
No 268
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=86.03 E-value=0.58 Score=50.59 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.7
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.++||||-+|.||||+|+.+-.
T Consensus 318 E~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 269
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=86.02 E-value=0.63 Score=42.45 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.5
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.++|.+|+||||+++.+...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 270
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=85.95 E-value=0.65 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 271
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=85.93 E-value=1.4 Score=40.86 Aligned_cols=45 Identities=29% Similarity=0.400 Sum_probs=31.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVA 187 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~ 187 (769)
-.-+-++|..|+|||+||..+.++...++. .+..+.+.+++.++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~----------~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGY----------SVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT------------EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCc----------ceeEeecCceecccc
Confidence 356889999999999999999998764332 223356777777663
No 272
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=85.85 E-value=0.68 Score=42.84 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.4
Q ss_pred cEEEEEccCCCchHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFA 154 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~ 154 (769)
.+++|+|..|.|||||.+.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 588999999999999999885
No 273
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=85.82 E-value=0.66 Score=44.87 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 274
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=85.80 E-value=0.68 Score=43.71 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 275
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=85.80 E-value=0.9 Score=43.07 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
..|.|.|..|+||||+++.+.+.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999987543
No 276
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.56 E-value=0.98 Score=41.82 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=22.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
.++.++|..|+||||++..+.......
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 378899999999999999998876533
No 277
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=85.53 E-value=5.1 Score=42.97 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=24.4
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
...+|-++|..|+||||++..+...+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3579999999999999999999987664
No 278
>PRK06761 hypothetical protein; Provisional
Probab=85.39 E-value=0.78 Score=45.75 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+|.|.|..|.||||+++.+.+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999999764
No 279
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=85.32 E-value=0.98 Score=46.08 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+++-+.|-||+||||+|-...-...
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A 26 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALA 26 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHh
Confidence 6788999999999999977766544
No 280
>PRK13342 recombination factor protein RarA; Reviewed
Probab=85.23 E-value=1.1 Score=48.25 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=27.0
Q ss_pred HHHHhhcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 124 MQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 124 i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+...+..+....+-++|..|+||||+|+.+.+..
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4444455566678899999999999999999854
No 281
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=85.22 E-value=0.74 Score=44.90 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+++|+|..|.|||||++.+..-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 589999999999999999998743
No 282
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.22 E-value=0.74 Score=44.67 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 283
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=85.18 E-value=0.76 Score=44.65 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=23.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
+.|+|+|-||+||+|.+..+--.+....
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G 28 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMG 28 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhcc
Confidence 4689999999999999999887665433
No 284
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.16 E-value=0.75 Score=44.35 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 285
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.10 E-value=0.74 Score=45.19 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 286
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=85.08 E-value=0.88 Score=43.77 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|+|.|..|.||||+|+.+...+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999854
No 287
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=85.06 E-value=0.95 Score=45.53 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=21.5
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+||+|.|-||+||||++-.+...+.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la 27 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFA 27 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5888999999999998888877654
No 288
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=85.04 E-value=0.76 Score=44.34 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 289
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=84.97 E-value=0.77 Score=44.82 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999874
No 290
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=84.96 E-value=1.2 Score=40.28 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=25.1
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
.+-.||=.-|.+|.||||+|..++..+..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 345688889999999999999999977544
No 291
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.91 E-value=0.79 Score=44.08 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 292
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=84.91 E-value=2 Score=41.65 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=30.1
Q ss_pred HHHHHHhhc--CCccEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 122 LAMQTALID--VNVSIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 122 ~~i~~~l~~--~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
..+++.+.. ++..+|||-|-+|+||+||...+-..++.+.
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g 57 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERG 57 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcC
Confidence 455555553 3578999999999999999999999877553
No 293
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=84.90 E-value=0.69 Score=42.63 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.++|.+|+||||+++.+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998774
No 294
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=84.86 E-value=0.79 Score=41.21 Aligned_cols=20 Identities=40% Similarity=0.684 Sum_probs=18.6
Q ss_pred EEEEEccCCCchHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFA 154 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~ 154 (769)
.|+|-|-.|+||||.++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 295
>PRK09087 hypothetical protein; Validated
Probab=84.85 E-value=0.86 Score=44.22 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
...+.|||..|+|||||++.+.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999988874
No 296
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=84.84 E-value=0.77 Score=43.43 Aligned_cols=23 Identities=48% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+|.|-|+-|+||||+++.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999863
No 297
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=84.83 E-value=0.68 Score=42.78 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
...|+|+|..|+|||||++.+.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 298
>PRK14527 adenylate kinase; Provisional
Probab=84.83 E-value=0.92 Score=42.83 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|.|+|..|.||||+|+.+.+.+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 299
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=84.74 E-value=0.79 Score=43.46 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 300
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=84.74 E-value=0.88 Score=39.99 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=34.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEE---EEcCCCceEehhHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVF---SEDGSNKFFSMHDVVRDVAISIA 191 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~---~~~~~~~~~~~hdl~~dl~~~~~ 191 (769)
+.|-++|..|.|||||++.+......-..=|.+.+ .-+...+....+.+.+.+...-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~ 62 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQ 62 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHh
Confidence 45778999999999999999886432222222222 13334444555555555544333
No 301
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=84.72 E-value=0.8 Score=44.41 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999974
No 302
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=84.64 E-value=0.81 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 303
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=84.61 E-value=0.81 Score=43.43 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=28.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVA 187 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~ 187 (769)
+|+|.||.|+||+|.|+.+-+. + ....+.|-|.+++..
T Consensus 2 iI~i~G~~gsGKstva~~~~~~------g---------~~~~~~~~d~ik~~l 39 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIEN------Y---------NAVKYQLADPIKEIL 39 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhc------C---------CcEEEehhHHHHHHH
Confidence 7999999999999988887542 1 111167888888753
No 304
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=84.61 E-value=0.9 Score=42.51 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=20.1
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.|+.|+|-+|.||||+.+-+..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 5899999999999999998876
No 305
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=84.61 E-value=1.1 Score=42.00 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-.+|.|.|..|.||||+|+.+...+.
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998764
No 306
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=84.60 E-value=0.83 Score=43.90 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.2
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
..|+|+|-+|.|||||.+.|.-
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 307
>PRK08727 hypothetical protein; Validated
Probab=84.57 E-value=1 Score=44.05 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=23.8
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
..-+-|+|..|+|||+|++.+.+.....
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3469999999999999999999976543
No 308
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=84.56 E-value=0.79 Score=44.18 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999764
No 309
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=84.53 E-value=0.84 Score=45.59 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.++||||-+|.||||+++.|..-
T Consensus 32 E~lgiVGESGsGKS~~~~aim~l 54 (316)
T COG0444 32 EILGIVGESGSGKSVLAKAIMGL 54 (316)
T ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Confidence 58999999999999999999984
No 310
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=84.48 E-value=1.9 Score=36.95 Aligned_cols=35 Identities=31% Similarity=0.289 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+.+++.+..+ .||...|-=|.||||++|.+...+.
T Consensus 6 ~~l~~~l~~g--~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 6 KKLAQILKPG--DVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp HHHHHHHSS---EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHhCCCC--CEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4556555443 6899999999999999999998753
No 311
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.36 E-value=0.84 Score=44.03 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=22.3
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHH
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.. .+++|+|..|.|||||++.+...
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 35 79999999999999999999874
No 312
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=84.30 E-value=0.84 Score=45.23 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=20.5
Q ss_pred EEEEccCCCchHHHHHHHHHHhh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~~ 158 (769)
|-+.|..|+||||+|+.+...+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998754
No 313
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=84.22 E-value=2.2 Score=40.38 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
...++.+...+-+++.|.|.+|.||||+++.+.+.....
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 455566655556788899999999999999998866544
No 314
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.16 E-value=0.89 Score=44.11 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 315
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=84.06 E-value=1.6 Score=39.31 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHH
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
+.+.+.+.+ +++.++|..|+||+||.+.+..+
T Consensus 27 ~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 27 EELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 455555555 68899999999999999998885
No 316
>PRK01184 hypothetical protein; Provisional
Probab=84.05 E-value=0.96 Score=42.39 Aligned_cols=21 Identities=57% Similarity=0.825 Sum_probs=17.9
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+|++.|..|.||||+|+ +..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 489999999999999887 444
No 317
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=84.03 E-value=0.92 Score=44.34 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=22.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
=.+++|+|..|.|||||.+.+..-+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999999843
No 318
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=84.03 E-value=0.98 Score=40.96 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-|-.+||-|.||||+++.+.+.+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc
Confidence 36789999999999999998864
No 319
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=84.02 E-value=0.9 Score=44.39 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 320
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=84.02 E-value=0.9 Score=43.49 Aligned_cols=23 Identities=48% Similarity=0.589 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 321
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=84.01 E-value=0.78 Score=41.95 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=18.5
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~ 155 (769)
|+++|..|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999984
No 322
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.01 E-value=1.2 Score=43.49 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
...+-++|-.|+|||+||+.++++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999754
No 323
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=84.00 E-value=0.96 Score=42.83 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
=.+++++|..|+||||+.+.|..-.
T Consensus 29 Geiv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999999843
No 324
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=83.97 E-value=13 Score=38.91 Aligned_cols=25 Identities=44% Similarity=0.563 Sum_probs=19.6
Q ss_pred CccEEEEEccCCCchH-HHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKT-TLVKEFARR 156 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKT-tla~~v~~~ 156 (769)
+-+||.+||-.|+||| |||+.....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 4789999999999997 566655553
No 325
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=83.95 E-value=0.98 Score=42.76 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=25.2
Q ss_pred HHhhcCCccEEEEEccCCCchHHHHHHHHHH
Q 004197 126 TALIDVNVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 126 ~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
+++..+...-|+|+|..|+|||||.+.+.+.
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3444556778999999999999999999873
No 326
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=83.93 E-value=1.8 Score=42.66 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=33.0
Q ss_pred HHHHHHhh--cCCccEEEEEccCCCchHHHHHHHHHHhhhhcC
Q 004197 122 LAMQTALI--DVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKL 162 (769)
Q Consensus 122 ~~i~~~l~--~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~ 162 (769)
..++..+. .++..||||-|.+|+||+|+...+-.++..+.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 45555555 456779999999999999999999998876665
No 327
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=83.91 E-value=0.89 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+..-
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 328
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.90 E-value=0.89 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 329
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=83.86 E-value=0.85 Score=41.04 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.3
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|+++|..|+|||||++.+...
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999888764
No 330
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.86 E-value=0.98 Score=39.98 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~ 157 (769)
|=++|..|+|||++|+.+....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999954
No 331
>PLN02165 adenylate isopentenyltransferase
Probab=83.86 E-value=0.98 Score=45.99 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=24.2
Q ss_pred hcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 129 IDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 129 ~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+..-.+|.|+|+.|+||||||..+....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 34445699999999999999999998853
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=83.82 E-value=0.98 Score=40.32 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58899999999999999999774
No 333
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=83.78 E-value=0.94 Score=43.70 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+...
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58899999999999999999874
No 334
>PRK07429 phosphoribulokinase; Provisional
Probab=83.77 E-value=0.93 Score=46.55 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.0
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..-+|||.|..|.||||+++.+...+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 45699999999999999999999754
No 335
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.73 E-value=0.94 Score=43.29 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 336
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=83.69 E-value=0.91 Score=43.03 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
+++|+|-.|.|||||++.++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999975
No 337
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.64 E-value=0.87 Score=43.83 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
+++|+|..|.|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8899999999999999999873
No 338
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=83.63 E-value=0.96 Score=43.91 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|..|.|||||++.+...
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 339
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=83.62 E-value=1.3 Score=45.60 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=29.9
Q ss_pred HHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeE
Q 004197 124 MQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMV 166 (769)
Q Consensus 124 i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~ 166 (769)
|-..+..+.+.-.=.||-.|+||||+|+.|-... ...|...
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~--~~~f~~~ 79 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT--NAAFEAL 79 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh--CCceEEe
Confidence 3344445667767799999999999999999843 3455544
No 340
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.62 E-value=0.94 Score=44.60 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 341
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=83.61 E-value=1.3 Score=45.21 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=21.7
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+.++|+|.|-||+||||++-.+.-.+.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la 29 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALV 29 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHH
Confidence 357899999999999998877666544
No 342
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=83.56 E-value=1.4 Score=32.30 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.6
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
+..|.|-.|.||||+..++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999987765
No 343
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=83.54 E-value=0.96 Score=44.31 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 344
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=83.46 E-value=0.96 Score=44.98 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 345
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=83.43 E-value=0.9 Score=41.44 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.1
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|.++|..|+||||+++.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 346
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=83.34 E-value=1 Score=43.43 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+..-
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 347
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=83.34 E-value=2 Score=45.54 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=28.3
Q ss_pred HHHHHHhh----cCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALI----DVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~----~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+.|...+. ......+-|+|..|+|||++++.+++++.
T Consensus 25 ~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 25 EELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555544 23346789999999999999999999764
No 348
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=83.34 E-value=1.8 Score=44.32 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.9
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.-..|.++|+.|.||||+++.+.+.+
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998854
No 349
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=83.31 E-value=0.97 Score=40.96 Aligned_cols=21 Identities=33% Similarity=0.770 Sum_probs=18.8
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|.|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998763
No 350
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=83.30 E-value=0.99 Score=40.68 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.3
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|.++|..|+||||+++.+.+.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999875
No 351
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=83.30 E-value=1 Score=43.14 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 352
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=83.30 E-value=0.85 Score=46.47 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=19.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++-+.|.||+||||.|-+..=
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~ 24 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV 24 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH
Confidence 46888999999999999888444
No 353
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=83.29 E-value=0.97 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 354
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.27 E-value=1 Score=42.86 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 355
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=83.26 E-value=0.97 Score=44.62 Aligned_cols=23 Identities=48% Similarity=0.793 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 356
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=83.20 E-value=0.96 Score=40.15 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.++|.+|+|||||++.+.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999987654
No 357
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=83.16 E-value=1.2 Score=42.28 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.|+|.|..|.||||+.+.+.+...
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 589999999999999999998643
No 358
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=83.12 E-value=1.6 Score=50.08 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=27.5
Q ss_pred HHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 123 AMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 123 ~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+...+..+....+-++|..|+||||+|+.+.+..
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34444455667777899999999999999999864
No 359
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=83.12 E-value=0.91 Score=41.74 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=18.5
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~ 155 (769)
|+|+|..|+|||||.+.+.+
T Consensus 3 v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred eEEECCCCCCHHHHHHHHhc
Confidence 79999999999999999875
No 360
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=83.09 E-value=1.3 Score=45.20 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=25.2
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
+...+|+|.|.+|+||||++..+...+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 346799999999999999999998876533
No 361
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=83.07 E-value=1.8 Score=42.02 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=27.0
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEE
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSE 170 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~ 170 (769)
.+.|+|..|.||||+...+.... ...|+.+.++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~--~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL--RHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh--cccCCEEEEEe
Confidence 56899999999999999998754 46777666653
No 362
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.07 E-value=1 Score=44.11 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 363
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=83.04 E-value=0.99 Score=41.14 Aligned_cols=21 Identities=48% Similarity=0.600 Sum_probs=19.1
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
+|+|+|..|+|||||.+.+-+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 789999999999999998864
No 364
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=83.01 E-value=1.2 Score=45.08 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=20.5
Q ss_pred EEEEccCCCchHHHHHHHHHHhhh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
|++.|-||+||||++-.+.-.+..
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~ 26 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALAR 26 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 789999999999999888776553
No 365
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=83.00 E-value=3.3 Score=40.81 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 004197 34 FRNLKAEIDKLKDESRSIQHRVSEA-ERKGEKIEEKVKKWLVSANNTIEQAAKFIDD 89 (769)
Q Consensus 34 ~~~~~~~~~~L~~~l~~i~~~l~~a-~~~~~~~~~~~~~W~~~~~~~~~~~ed~~d~ 89 (769)
+.-++.+++-++.+++.++.|++.. +....+.+. .++...++...||++|-++|.
T Consensus 316 laflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDa 371 (402)
T PF12061_consen 316 LAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYVVDA 371 (402)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeeeeeh
Confidence 5566788999999999999999995 444455444 899999999999999999986
No 366
>PRK08356 hypothetical protein; Provisional
Probab=82.93 E-value=1 Score=42.62 Aligned_cols=20 Identities=50% Similarity=0.634 Sum_probs=18.7
Q ss_pred cEEEEEccCCCchHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEF 153 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v 153 (769)
.+|+|.|..|+||||+|+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 367
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=82.92 E-value=1.1 Score=43.26 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 368
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=82.92 E-value=3.3 Score=35.38 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.0
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+.-|++..|-.|+|||.+++.|.+.+.
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 456999999999999998888888743
No 369
>PRK10536 hypothetical protein; Provisional
Probab=82.92 E-value=3.2 Score=40.60 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEE
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVF 168 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~ 168 (769)
..+..++.+. .+|.+.|..|.|||+||..+..+....+.|+..+-
T Consensus 65 ~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 65 AHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred HHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 4555555553 48999999999999999999886443344554443
No 370
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=82.91 E-value=1 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|..|.|||||++.+...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 371
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=82.89 E-value=1.4 Score=36.63 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEEEc-cCCCchHHHHHHHHHHhhh
Q 004197 135 IIGVYG-MGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 135 vi~I~G-~gG~GKTtla~~v~~~~~~ 159 (769)
+|+++| .||+||||++..+...+..
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~ 26 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALAR 26 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 356666 6899999999998887653
No 372
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=82.87 E-value=1.1 Score=43.41 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+|.|-|+-|+||||+++.+-+.+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l 23 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKL 23 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 373
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=82.87 E-value=1 Score=40.95 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
..+|+++|..|+||||+.+.+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999865
No 374
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=82.86 E-value=1.1 Score=40.91 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=18.8
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|.++|.+|+|||||++.+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998763
No 375
>PRK05642 DNA replication initiation factor; Validated
Probab=82.82 E-value=1.3 Score=43.27 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+-|+|-.|+|||+|++.+.+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~ 70 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE 70 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999998764
No 376
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=82.82 E-value=1.1 Score=40.95 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.1
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.|+|-+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998763
No 377
>PRK10646 ADP-binding protein; Provisional
Probab=82.79 E-value=2.2 Score=38.09 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
+.++..+..+ .||...|-=|.||||++|.+...+.+
T Consensus 19 ~~la~~l~~g--~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 19 ARVAKACDGA--TVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHhCCCC--cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4555555544 48999999999999999999997643
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=82.78 E-value=5.2 Score=42.79 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+|-++|..|+||||++..+...+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999888877654
No 379
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=82.70 E-value=0.85 Score=39.05 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=16.1
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~ 157 (769)
|=++|..|+||||+|+.+....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 3478999999999999999853
No 380
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=82.69 E-value=1.1 Score=43.92 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|.|..|.|||||++.+...
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999974
No 381
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=82.67 E-value=1.2 Score=40.81 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999874
No 382
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.67 E-value=1.1 Score=44.52 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=20.3
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+.-
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 30 SVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999999975
No 383
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=82.67 E-value=1 Score=44.53 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|..|.|||||++.+.--
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999998864
No 384
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=82.65 E-value=1.1 Score=42.29 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|-|.|..|+||||+|+.+.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999885
No 385
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=82.65 E-value=0.99 Score=46.67 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+..-
T Consensus 34 e~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 34 EVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 58999999999999999999874
No 386
>PLN02924 thymidylate kinase
Probab=82.61 E-value=1.5 Score=42.27 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=24.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
..|.|-|..|+||||+++.+.+.+..+
T Consensus 17 ~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 17 ALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 479999999999999999999987654
No 387
>PRK10867 signal recognition particle protein; Provisional
Probab=82.58 E-value=10 Score=40.58 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=23.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
..+|-++|..|+||||++..+...+..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5799999999999999888887766543
No 388
>PTZ00088 adenylate kinase 1; Provisional
Probab=82.57 E-value=1.2 Score=43.17 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~ 157 (769)
|-|+|+.|+||||+|+.+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998854
No 389
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=82.56 E-value=1.1 Score=43.61 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998763
No 390
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=82.55 E-value=1.2 Score=41.64 Aligned_cols=23 Identities=43% Similarity=0.743 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+...
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 391
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=82.54 E-value=1.2 Score=41.25 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999874
No 392
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.49 E-value=1.1 Score=42.82 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|-.|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 393
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=82.47 E-value=1.1 Score=44.17 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 394
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=82.47 E-value=1.1 Score=40.98 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|.++|.+|+|||||++.+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988774
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=82.46 E-value=1.1 Score=42.67 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.2
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||.+.++-
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~ 44 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKY 44 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999975
No 396
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.43 E-value=1.1 Score=44.13 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999874
No 397
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=82.42 E-value=1.1 Score=41.00 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.2
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.-|.|+|.+|+|||||++.+..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4578999999999999998765
No 398
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=82.37 E-value=1 Score=40.58 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999988764
No 399
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=82.36 E-value=1.2 Score=41.49 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58899999999999999999874
No 400
>PRK06620 hypothetical protein; Validated
Probab=82.36 E-value=1.2 Score=42.79 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..+-|||..|+|||+|++.+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999987774
No 401
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=82.33 E-value=1.2 Score=43.56 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.0
Q ss_pred cCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 130 DVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 130 ~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+.+.-|=++|..|.||||||.-|.++..
T Consensus 49 ~e~lDHvLl~GPPGlGKTTLA~IIA~Emg 77 (332)
T COG2255 49 GEALDHVLLFGPPGLGKTTLAHIIANELG 77 (332)
T ss_pred CCCcCeEEeeCCCCCcHHHHHHHHHHHhc
Confidence 34467788999999999999999999864
No 402
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=82.30 E-value=1.1 Score=43.46 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+...
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 403
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=82.27 E-value=1.2 Score=43.22 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58899999999999999999863
No 404
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=82.24 E-value=1.2 Score=43.41 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999874
No 405
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=82.22 E-value=2 Score=44.57 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
...+-++|..|+||||+|+.+.++..
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhC
Confidence 56778999999999999999999754
No 406
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=82.21 E-value=1.2 Score=43.72 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 407
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=82.19 E-value=1.1 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 34 e~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 34 EIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred CEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999999874
No 408
>PRK13973 thymidylate kinase; Provisional
Probab=82.19 E-value=1.6 Score=42.07 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=24.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
..|.|-|..|+||||.++.+++.+..++
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g 31 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAG 31 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 4688999999999999999999876543
No 409
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=82.18 E-value=1.1 Score=42.97 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.1
Q ss_pred ccEEEEEccCCCchHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFA 154 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~ 154 (769)
..+++|+|..|.||||+.+.+.
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999985
No 410
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=82.15 E-value=1.2 Score=42.43 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998874
No 411
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=82.13 E-value=1.2 Score=40.78 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58899999999999999999874
No 412
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=82.12 E-value=1.1 Score=44.06 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999863
No 413
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=82.11 E-value=1.1 Score=42.30 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
...|.|+|.+|+|||||++.+..
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34569999999999999998876
No 414
>PRK00023 cmk cytidylate kinase; Provisional
Probab=82.09 E-value=1.4 Score=42.75 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=22.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|+|.|..|.||||+|+.+.+.+
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999865
No 415
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=82.08 E-value=1.1 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 416
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.04 E-value=1.3 Score=41.11 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 417
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=82.02 E-value=1.2 Score=44.32 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 418
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=81.99 E-value=1.2 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.6
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 419
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.98 E-value=1.2 Score=42.01 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
=.+++|+|-.|.|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 420
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=81.97 E-value=1.2 Score=44.15 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 421
>PRK10908 cell division protein FtsE; Provisional
Probab=81.96 E-value=1.2 Score=43.22 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|-.|.|||||++.+.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 422
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=81.95 E-value=1.2 Score=43.81 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|..|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 423
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=81.95 E-value=2.3 Score=41.02 Aligned_cols=51 Identities=27% Similarity=0.462 Sum_probs=33.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAISIA 191 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~~~~ 191 (769)
...+-|+|-.|+|||.|+++++++......=..+. .....+.+.+++..+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~--------y~~~~~f~~~~~~~~~ 84 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVV--------YLSAEEFIREFADALR 84 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EE--------EEEHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccce--------eecHHHHHHHHHHHHH
Confidence 45678999999999999999999865432211222 2445566666555443
No 424
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=81.94 E-value=1.1 Score=40.71 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.0
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|.++|..|+||||+.+.+.+.
T Consensus 2 i~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 689999999999999998874
No 425
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=81.92 E-value=1.2 Score=42.66 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 426
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=81.88 E-value=1.2 Score=43.69 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|..|.|||||++.+...
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 427
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=81.85 E-value=1.2 Score=42.84 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|-.|.|||||++.+...
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 428
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=81.84 E-value=1.2 Score=44.07 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 429
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=81.77 E-value=1.2 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999874
No 430
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=81.75 E-value=1.3 Score=42.14 Aligned_cols=24 Identities=42% Similarity=0.506 Sum_probs=21.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 431
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=81.75 E-value=1.2 Score=40.49 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=17.8
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~ 155 (769)
|.++|.+|+|||||++.+.+
T Consensus 3 i~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999988765
No 432
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=81.68 E-value=1.2 Score=42.97 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.0
Q ss_pred cEEEEEccCCCchHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFA 154 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~ 154 (769)
.+++|+|..|.||||+++.+.
T Consensus 29 ~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 29 GLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHhe
Confidence 489999999999999998884
No 433
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.62 E-value=1.2 Score=43.77 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 434
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=81.58 E-value=1.3 Score=42.72 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 435
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=81.57 E-value=1.3 Score=40.24 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=18.9
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|.++|-+|+|||||++.+.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999998874
No 436
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=81.53 E-value=1.2 Score=41.00 Aligned_cols=20 Identities=45% Similarity=0.846 Sum_probs=18.0
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~ 155 (769)
|.++|.+|+||||+++.+-+
T Consensus 4 i~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999888765
No 437
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.52 E-value=1.3 Score=44.06 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+...
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999874
No 438
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=81.48 E-value=1.3 Score=41.41 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+++|+|-.|.|||||++.+....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998743
No 439
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=81.47 E-value=1.2 Score=43.83 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 440
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=81.45 E-value=1.2 Score=44.73 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.9
Q ss_pred ccEEEEEccCCCchHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFA 154 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~ 154 (769)
..+|.|.|+.|.||||+++.+-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999999984
No 441
>COG4240 Predicted kinase [General function prediction only]
Probab=81.45 E-value=2.2 Score=40.11 Aligned_cols=41 Identities=24% Similarity=0.223 Sum_probs=31.9
Q ss_pred HHHHHH-hhcCCccEEEEEccCCCchHHHHHHHHHHhhhhcC
Q 004197 122 LAMQTA-LIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKL 162 (769)
Q Consensus 122 ~~i~~~-l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~ 162 (769)
++|+.+ ...++.-++||.|-.|.||||++-.+++.+..+..
T Consensus 38 ~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ 79 (300)
T COG4240 38 AKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL 79 (300)
T ss_pred HhhhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcc
Confidence 344433 44556779999999999999999999998876654
No 442
>PRK14738 gmk guanylate kinase; Provisional
Probab=81.44 E-value=1.3 Score=42.28 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=21.7
Q ss_pred CccEEEEEccCCCchHHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..+.|-|+|.+|+||||+++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3568889999999999999999764
No 443
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=81.44 E-value=1.2 Score=40.54 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.5
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~ 155 (769)
|.++|.+|+|||||++.+..
T Consensus 3 v~~~G~~~~GKTsli~~l~~ 22 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKL 22 (159)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999998743
No 444
>PRK06835 DNA replication protein DnaC; Validated
Probab=81.43 E-value=2.6 Score=43.37 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
.-+-++|..|+|||+||..+.++...+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 678999999999999999999987644
No 445
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=81.40 E-value=1.3 Score=40.19 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.0
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.++|..|+|||||++.+.+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999888763
No 446
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=81.39 E-value=2 Score=39.80 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHhhcCCccEEEEEccCCCchHHHHHHHHH
Q 004197 124 MQTALIDVNVSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 124 i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
+.+.+...+...|.++|.+|+||||+.+.+..
T Consensus 6 ~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~ 37 (174)
T cd04153 6 LWSLFFPRKEYKVIIVGLDNAGKTTILYQFLL 37 (174)
T ss_pred HHHHhcCCCccEEEEECCCCCCHHHHHHHHcc
Confidence 34444333345678999999999999988865
No 447
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=81.39 E-value=1.3 Score=44.25 Aligned_cols=23 Identities=39% Similarity=0.770 Sum_probs=21.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999984
No 448
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.36 E-value=1.3 Score=42.34 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999998874
No 449
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=81.35 E-value=1.3 Score=44.21 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+.-.
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999874
No 450
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=81.27 E-value=1.2 Score=44.53 Aligned_cols=23 Identities=39% Similarity=0.716 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999874
No 451
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=81.26 E-value=1.3 Score=45.87 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+..-
T Consensus 42 e~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred CEEEEECCCCCcHHHHHHHHHcC
Confidence 58999999999999999999874
No 452
>PRK12377 putative replication protein; Provisional
Probab=81.21 E-value=3 Score=40.91 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=37.1
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHH
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAI 188 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~ 188 (769)
..+++.+.. +...+-++|-.|+|||+||..+.+.+..+.. .+. ...+.|++.++..
T Consensus 91 ~~~a~~~~~-~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~--~v~--------~i~~~~l~~~l~~ 146 (248)
T PRK12377 91 KSIADELMT-GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGR--SVI--------VVTVPDVMSRLHE 146 (248)
T ss_pred HHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--CeE--------EEEHHHHHHHHHH
Confidence 345555544 3467889999999999999999998763321 222 2445566666543
No 453
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=81.18 E-value=1.2 Score=46.22 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+++|+|-.|.|||||++.+..-.
T Consensus 43 e~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 43 ETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 589999999999999999998743
No 454
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=81.13 E-value=1.3 Score=43.53 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 58999999999999999999984
No 455
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=81.13 E-value=1.3 Score=44.18 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 456
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.12 E-value=2.1 Score=45.05 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..++.++|.+|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 457
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=81.11 E-value=1.3 Score=42.28 Aligned_cols=19 Identities=47% Similarity=0.593 Sum_probs=17.9
Q ss_pred EEEEEccCCCchHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEF 153 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v 153 (769)
.|||+|-.|.|||||++.+
T Consensus 2 ~i~~~g~~~~GKttL~~~l 20 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKAL 20 (203)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 458
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=81.09 E-value=1.3 Score=40.11 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.|+|.+|+||||+.+.+.+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999888874
No 459
>PRK13976 thymidylate kinase; Provisional
Probab=80.99 E-value=1.6 Score=41.74 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
.|.|-|..|+||||.++.+++.+...
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999988754
No 460
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=80.97 E-value=1.3 Score=40.63 Aligned_cols=21 Identities=43% Similarity=0.895 Sum_probs=18.3
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
.|.++|.+|+|||||.+.+-+
T Consensus 3 kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999988765
No 461
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=80.92 E-value=1.6 Score=43.81 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.-+|.|.|..|+||||+|+.+...+
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999999999865
No 462
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=80.91 E-value=1.4 Score=40.81 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=23.1
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+=.|.|+.|-.|.||||+.+.++.-+
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL 52 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLL 52 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhc
Confidence 45799999999999999999999854
No 463
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=80.90 E-value=1.3 Score=44.10 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999874
No 464
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=80.90 E-value=1.4 Score=40.38 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=18.4
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|.++|..|+|||||.+.+...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 689999999999999987653
No 465
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=80.87 E-value=1.4 Score=43.78 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..+.+|+|-.|.||||++++++--
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999874
No 466
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.86 E-value=1.4 Score=41.95 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+.+|+|-+|.|||||.+.|---
T Consensus 35 ei~~iiGgSGsGKStlLr~I~Gl 57 (263)
T COG1127 35 EILAILGGSGSGKSTLLRLILGL 57 (263)
T ss_pred cEEEEECCCCcCHHHHHHHHhcc
Confidence 58999999999999999998874
No 467
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.85 E-value=1.5 Score=40.51 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|-.|.|||||++.+..-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358899999999999999999884
No 468
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.85 E-value=1.3 Score=45.03 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 469
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=80.85 E-value=1.6 Score=41.35 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+|+|.|.-|.||||+++.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988773
No 470
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=80.83 E-value=11 Score=41.61 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..|+|+|..|+|||||.+.+....
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhc
Confidence 479999999999999999997753
No 471
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=80.81 E-value=1.3 Score=43.19 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998874
No 472
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=80.78 E-value=1.5 Score=43.86 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=21.8
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..-+-++|..|.||||+|+.+.+.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999998653
No 473
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.77 E-value=1.4 Score=43.76 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 30 QITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 474
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=80.75 E-value=1.4 Score=43.85 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.3
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 32 EITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 475
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=80.75 E-value=1.3 Score=43.85 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999874
No 476
>PRK02496 adk adenylate kinase; Provisional
Probab=80.75 E-value=1.6 Score=40.97 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.|.|+|..|.||||+|+.+...+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998854
No 477
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=80.75 E-value=1.4 Score=42.91 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|.|..|.|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 478
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=80.74 E-value=1.4 Score=42.00 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.5
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHH
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
+....|+|+|.+|+|||||.+.+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 34568999999999999999988875
No 479
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=80.71 E-value=1.2 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..|+|+|..|.|||||+|.+-.-
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998763
No 480
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.65 E-value=1.4 Score=43.95 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|-.|.|||||++.+.-.
T Consensus 39 e~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 39 EVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999874
No 481
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=80.63 E-value=1.6 Score=41.04 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-.++.|+|-.|.||||+++.+...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998874
No 482
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=80.59 E-value=1.4 Score=44.34 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 48 AVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999977
No 483
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=80.58 E-value=2.6 Score=43.99 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.++...+..+....+-++|-.|+||||+|+.+.+...
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 5666666666656678999999999999999998653
No 484
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=80.48 E-value=1.8 Score=39.66 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=21.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.++-+.|.+|+||+|+++.++++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 467889999999999999999964
No 485
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=80.43 E-value=1.4 Score=40.36 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
+.|.++|..|+||||+++.+.+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Confidence 36889999999999999998763
No 486
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=80.43 E-value=2.5 Score=41.24 Aligned_cols=35 Identities=26% Similarity=0.522 Sum_probs=27.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEE
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVF 168 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~ 168 (769)
+-++|+|+.|.|||++++.+..+...+..+..+++
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~ 58 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIF 58 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 46899999999999999999998764444444443
No 487
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.43 E-value=1.4 Score=44.16 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 488
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=80.35 E-value=1.7 Score=40.48 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.1
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHH
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+...|.|+|..|+||||+.+.+...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 44567899999999999999988764
No 489
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=80.33 E-value=1.5 Score=43.95 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 490
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=80.30 E-value=1.5 Score=39.86 Aligned_cols=34 Identities=35% Similarity=0.455 Sum_probs=24.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEE
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSE 170 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~ 170 (769)
++.|+|..|.||||+++.+...... .-..+.++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEE
Confidence 4679999999999999999886543 233444443
No 491
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=80.29 E-value=1.4 Score=44.00 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+.--
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999863
No 492
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=80.27 E-value=2.9 Score=40.08 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=29.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCC
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGS 173 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~ 173 (769)
+++.|+|.+|.|||+++.++..+.. ...+.++|+....
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC
Confidence 6899999999999999998776543 2346788877653
No 493
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=80.26 E-value=2.2 Score=38.60 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=23.5
Q ss_pred cEEEEEc-cCCCchHHHHHHHHHHhhhhc
Q 004197 134 SIIGVYG-MGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 134 ~vi~I~G-~gG~GKTtla~~v~~~~~~~~ 161 (769)
++|++|| .||+||||+|..+...+..+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~ 29 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKG 29 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcC
Confidence 5899999 789999999999998765443
No 494
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=80.24 E-value=1.5 Score=42.49 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
=.+++|+|..|.|||||++.+...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 495
>PRK14737 gmk guanylate kinase; Provisional
Probab=80.24 E-value=1.6 Score=40.88 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-.+|-|+|.+|+||||+++.+.++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468899999999999999999885
No 496
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=80.23 E-value=1.5 Score=43.49 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+.--
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 497
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.14 E-value=1.5 Score=43.47 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.9
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+.||+|.+|.|||||.+.+.-
T Consensus 33 eI~GIIG~SGAGKSTLiR~iN~ 54 (339)
T COG1135 33 EIFGIIGYSGAGKSTLLRLINL 54 (339)
T ss_pred cEEEEEcCCCCcHHHHHHHHhc
Confidence 5899999999999999988765
No 498
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.13 E-value=1.6 Score=39.59 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+++|+|-.|.||||+++.+....
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998743
No 499
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=80.11 E-value=1.5 Score=42.35 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 27 GQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999974
No 500
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.09 E-value=1.4 Score=44.31 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999864
Done!