Query 004197
Match_columns 769
No_of_seqs 444 out of 4143
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 17:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 6.5E-35 2.2E-39 331.7 30.1 507 198-760 16-555 (606)
2 3t6q_A CD180 antigen; protein- 100.0 6.4E-33 2.2E-37 315.3 29.4 502 198-760 17-557 (606)
3 3rgz_A Protein brassinosteroid 100.0 3.9E-33 1.3E-37 324.0 24.5 454 261-759 197-736 (768)
4 1ziw_A TOLL-like receptor 3; i 100.0 9.1E-32 3.1E-36 310.1 33.6 513 198-761 9-595 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-32 8.6E-37 310.4 27.7 488 218-761 14-532 (606)
6 3rgz_A Protein brassinosteroid 100.0 3E-32 1E-36 316.6 28.8 478 216-743 179-744 (768)
7 3t6q_A CD180 antigen; protein- 100.0 1E-31 3.5E-36 305.4 29.7 496 218-761 15-534 (606)
8 2z63_A TOLL-like receptor 4, v 100.0 2.9E-31 1E-35 299.6 31.6 492 198-760 12-528 (570)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-30 5.5E-35 305.2 30.7 477 197-737 8-558 (844)
10 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-30 4E-35 293.1 27.4 476 203-760 15-507 (549)
11 1ziw_A TOLL-like receptor 3; i 100.0 9.8E-30 3.3E-34 293.1 34.1 493 218-760 7-546 (680)
12 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-29 1.1E-33 294.3 30.3 482 218-757 7-533 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 1.3E-28 4.3E-33 278.0 31.8 474 198-738 33-530 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-29 1.8E-33 279.5 26.6 461 198-740 31-511 (549)
15 4ecn_A Leucine-rich repeat pro 100.0 2.9E-29 9.8E-34 288.7 23.7 160 559-737 673-838 (876)
16 4eco_A Uncharacterized protein 100.0 4.4E-29 1.5E-33 283.1 22.9 186 276-514 195-413 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-29 1.2E-33 278.7 21.5 142 218-371 3-150 (520)
18 4eco_A Uncharacterized protein 100.0 1.3E-28 4.3E-33 279.3 23.0 425 237-743 81-603 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 2.4E-28 8.1E-33 281.1 24.6 390 298-740 436-873 (876)
20 4g8a_A TOLL-like receptor 4; l 100.0 6.4E-27 2.2E-31 268.0 31.1 168 199-372 37-214 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 9.5E-28 3.2E-32 267.2 22.9 456 197-738 4-480 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-27 9.1E-32 265.8 25.6 439 264-760 52-507 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.5E-26 1.2E-30 256.7 24.7 456 217-738 33-509 (562)
24 1o6v_A Internalin A; bacterial 99.9 4.3E-25 1.5E-29 241.6 27.6 345 213-683 44-389 (466)
25 1o6v_A Internalin A; bacterial 99.9 5.9E-25 2E-29 240.5 27.5 348 263-718 45-392 (466)
26 3v47_A TOLL-like receptor 5B a 99.9 1.9E-25 6.4E-30 244.4 21.2 113 259-372 49-167 (455)
27 4g8a_A TOLL-like receptor 4; l 99.9 3.6E-24 1.2E-28 245.1 29.7 483 219-760 35-577 (635)
28 3bz5_A Internalin-J, INLJ; leu 99.9 3.4E-24 1.2E-28 232.2 26.1 354 213-720 40-394 (457)
29 4fmz_A Internalin; leucine ric 99.9 3.4E-24 1.2E-28 225.2 25.4 149 212-406 41-189 (347)
30 3v47_A TOLL-like receptor 5B a 99.9 1.3E-24 4.6E-29 237.6 22.5 136 263-409 29-169 (455)
31 4fmz_A Internalin; leucine ric 99.9 6.9E-24 2.4E-28 222.9 24.2 305 260-679 40-344 (347)
32 2id5_A Lingo-1, leucine rich r 99.9 1.3E-23 4.3E-28 231.1 25.4 298 264-679 32-331 (477)
33 1jl5_A Outer protein YOPM; leu 99.9 2.6E-24 9E-29 232.9 19.1 353 260-741 30-410 (454)
34 3o6n_A APL1; leucine-rich repe 99.9 9.8E-24 3.4E-28 225.4 22.2 131 236-371 44-177 (390)
35 3o6n_A APL1; leucine-rich repe 99.9 7.8E-24 2.7E-28 226.2 21.4 306 262-679 43-350 (390)
36 1jl5_A Outer protein YOPM; leu 99.9 5.6E-24 1.9E-28 230.3 19.5 405 214-747 10-437 (454)
37 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-23 9.7E-28 225.0 22.4 308 260-678 38-349 (457)
38 2id5_A Lingo-1, leucine rich r 99.9 5.4E-23 1.9E-27 226.0 22.7 174 218-408 14-190 (477)
39 3oja_B Anopheles plasmodium-re 99.9 5.4E-23 1.8E-27 231.9 21.7 152 235-405 49-203 (597)
40 3oja_B Anopheles plasmodium-re 99.9 7.4E-23 2.5E-27 230.8 21.7 134 262-407 49-184 (597)
41 3ogk_B Coronatine-insensitive 99.9 9.7E-24 3.3E-28 239.1 5.1 386 261-715 109-527 (592)
42 4fcg_A Uncharacterized protein 99.9 1.9E-21 6.6E-26 201.4 19.6 109 262-372 79-196 (328)
43 3ogk_B Coronatine-insensitive 99.9 1.4E-22 4.7E-27 229.7 10.3 403 214-682 72-526 (592)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-20 4.4E-25 196.3 20.3 125 265-406 34-159 (332)
45 1xku_A Decorin; proteoglycan, 99.8 6.9E-20 2.4E-24 190.7 23.5 136 264-411 52-188 (330)
46 2ft3_A Biglycan; proteoglycan, 99.8 3.2E-20 1.1E-24 193.3 19.6 136 263-411 53-189 (332)
47 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-20 5.2E-25 193.5 15.0 151 215-372 50-210 (313)
48 2p1m_B Transport inhibitor res 99.8 9.2E-22 3.2E-26 223.0 6.2 107 260-369 101-221 (594)
49 2p1m_B Transport inhibitor res 99.8 4.3E-22 1.5E-26 225.7 3.1 404 214-679 65-517 (594)
50 4fcg_A Uncharacterized protein 99.8 4.3E-20 1.5E-24 191.3 17.6 151 215-373 81-243 (328)
51 1xku_A Decorin; proteoglycan, 99.8 7.1E-19 2.4E-23 183.0 24.6 237 216-514 32-274 (330)
52 1ogq_A PGIP-2, polygalacturona 99.8 7.5E-20 2.6E-24 188.3 16.5 151 237-405 50-208 (313)
53 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-21 4.9E-26 213.9 0.7 141 257-405 21-181 (461)
54 2z80_A TOLL-like receptor 2, v 99.8 3.7E-19 1.3E-23 187.0 17.9 189 220-424 36-230 (353)
55 3zyj_A Leucine-rich repeat-con 99.8 4.1E-19 1.4E-23 192.5 18.5 241 218-514 46-290 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 4.6E-19 1.6E-23 192.9 18.7 241 218-514 57-301 (452)
57 2z66_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 182.9 15.8 143 201-371 15-162 (306)
58 1ozn_A Reticulon 4 receptor; N 99.8 5.4E-19 1.8E-23 179.7 14.8 196 198-410 16-217 (285)
59 2z80_A TOLL-like receptor 2, v 99.8 1.8E-18 6.1E-23 181.8 18.3 144 248-408 42-188 (353)
60 3g06_A SSPH2 (leucine-rich rep 99.8 4.2E-18 1.4E-22 189.8 21.6 117 264-409 40-156 (622)
61 1z7x_W Ribonuclease inhibitor; 99.8 6E-21 2E-25 209.0 -1.7 134 263-406 2-154 (461)
62 3zyi_A Leucine-rich repeat-con 99.8 1.4E-17 4.9E-22 181.0 20.0 209 248-513 65-276 (452)
63 3zyj_A Leucine-rich repeat-con 99.8 1.5E-17 5.1E-22 180.3 19.4 210 247-513 53-265 (440)
64 3g06_A SSPH2 (leucine-rich rep 99.8 5.8E-17 2E-21 180.5 24.5 258 216-600 41-299 (622)
65 2z66_A Variable lymphocyte rec 99.7 1.3E-17 4.3E-22 171.6 15.6 130 264-405 28-161 (306)
66 1ozn_A Reticulon 4 receptor; N 99.7 2.3E-17 7.9E-22 167.6 17.0 172 218-406 14-189 (285)
67 3o53_A Protein LRIM1, AGAP0063 99.7 8.5E-18 2.9E-22 173.4 9.2 246 257-627 27-277 (317)
68 2z62_A TOLL-like receptor 4, v 99.7 4.6E-17 1.6E-21 164.5 14.4 112 259-372 47-162 (276)
69 3o53_A Protein LRIM1, AGAP0063 99.7 8.2E-18 2.8E-22 173.6 8.7 227 257-548 51-278 (317)
70 2o6q_A Variable lymphocyte rec 99.7 1.4E-16 4.9E-21 160.1 17.4 191 198-405 21-216 (270)
71 2o6q_A Variable lymphocyte rec 99.7 2E-16 6.9E-21 159.0 17.6 130 265-408 17-147 (270)
72 1p9a_G Platelet glycoprotein I 99.7 2E-16 6.9E-21 160.4 16.0 181 214-413 9-191 (290)
73 2xwt_C Thyrotropin receptor; s 99.7 1.6E-16 5.5E-21 156.7 14.2 197 205-422 23-232 (239)
74 1wwl_A Monocyte differentiatio 99.7 2.5E-17 8.6E-22 169.5 7.8 202 262-514 93-307 (312)
75 3oja_A Leucine-rich immune mol 99.7 1.9E-16 6.4E-21 173.1 13.7 196 258-514 52-248 (487)
76 1p9a_G Platelet glycoprotein I 99.7 5E-16 1.7E-20 157.5 15.4 106 264-372 31-137 (290)
77 3rfs_A Internalin B, repeat mo 99.7 3.3E-16 1.1E-20 157.6 12.7 154 212-372 38-194 (272)
78 2z62_A TOLL-like receptor 4, v 99.7 4.8E-16 1.6E-20 157.1 13.9 202 264-514 28-235 (276)
79 3rfs_A Internalin B, repeat mo 99.7 8.1E-16 2.8E-20 154.8 15.3 170 235-423 39-212 (272)
80 1h6u_A Internalin H; cell adhe 99.7 1E-15 3.5E-20 156.8 16.0 185 212-422 38-223 (308)
81 2xwt_C Thyrotropin receptor; s 99.6 1E-15 3.6E-20 150.8 14.6 139 227-372 23-169 (239)
82 1h6u_A Internalin H; cell adhe 99.6 3E-15 1E-19 153.4 18.5 188 198-411 46-234 (308)
83 3m19_A Variable lymphocyte rec 99.6 1.4E-15 4.9E-20 151.0 15.1 174 217-407 16-192 (251)
84 3oja_A Leucine-rich immune mol 99.6 2.4E-15 8.1E-20 164.3 15.3 122 263-405 33-155 (487)
85 1h6t_A Internalin B; cell adhe 99.6 4.6E-15 1.6E-19 150.5 15.5 173 212-410 43-216 (291)
86 3m19_A Variable lymphocyte rec 99.6 7.6E-15 2.6E-19 145.7 16.3 169 198-372 19-192 (251)
87 1wwl_A Monocyte differentiatio 99.6 2.6E-15 8.9E-20 154.4 13.0 241 238-542 44-306 (312)
88 4ay9_X Follicle-stimulating ho 99.6 1.9E-14 6.7E-19 150.4 19.9 104 267-372 12-117 (350)
89 4ay9_X Follicle-stimulating ho 99.6 1.8E-14 6.1E-19 150.7 17.4 149 198-372 14-167 (350)
90 2ast_B S-phase kinase-associat 99.6 2.1E-15 7.2E-20 157.3 8.1 209 258-542 62-282 (336)
91 4ezg_A Putative uncharacterize 99.6 1.8E-14 6.3E-19 137.0 13.3 150 212-371 41-193 (197)
92 4glp_A Monocyte differentiatio 99.6 1.9E-15 6.5E-20 155.3 6.7 203 263-514 90-305 (310)
93 2o6s_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 139.6 11.1 115 257-372 45-161 (208)
94 3e6j_A Variable lymphocyte rec 99.5 3.5E-14 1.2E-18 138.5 14.0 148 219-372 23-172 (229)
95 2v70_A SLIT-2, SLIT homolog 2 99.5 2.4E-14 8.2E-19 138.6 12.8 150 218-372 14-166 (220)
96 2v9t_B SLIT homolog 2 protein 99.5 2.6E-14 9E-19 138.3 12.7 148 219-372 15-165 (220)
97 1h6t_A Internalin B; cell adhe 99.5 3.2E-14 1.1E-18 144.3 13.8 126 261-406 43-168 (291)
98 2ast_B S-phase kinase-associat 99.5 3E-15 1E-19 156.1 6.1 223 263-569 46-282 (336)
99 1m9s_A Internalin B; cell inva 99.5 2.2E-14 7.6E-19 159.6 13.2 175 211-411 39-214 (605)
100 2ca6_A RAN GTPase-activating p 99.5 1.3E-14 4.4E-19 154.3 6.7 139 258-406 26-199 (386)
101 1m9s_A Internalin B; cell inva 99.5 7.1E-14 2.4E-18 155.6 12.6 127 260-406 61-187 (605)
102 1xeu_A Internalin C; cellular 99.5 3.8E-14 1.3E-18 141.3 9.1 167 217-410 21-188 (263)
103 4ezg_A Putative uncharacterize 99.5 1.4E-13 4.7E-18 130.9 12.2 104 262-370 42-147 (197)
104 4glp_A Monocyte differentiatio 99.5 7.3E-14 2.5E-18 143.5 10.9 155 216-372 92-264 (310)
105 2ca6_A RAN GTPase-activating p 99.5 1.5E-14 5.1E-19 153.8 5.3 38 476-514 273-314 (386)
106 2v9t_B SLIT homolog 2 protein 99.5 2.3E-13 7.8E-18 131.7 12.6 129 264-404 32-162 (220)
107 2xot_A Amphoterin-induced prot 99.5 1.4E-13 4.8E-18 144.4 11.9 110 262-372 62-176 (361)
108 2ell_A Acidic leucine-rich nuc 99.5 2.2E-13 7.6E-18 125.9 11.5 140 262-412 22-165 (168)
109 3e6j_A Variable lymphocyte rec 99.5 3E-13 1E-17 131.8 12.1 141 248-407 30-172 (229)
110 4b8c_D Glucose-repressible alc 99.5 1E-13 3.5E-18 158.5 10.0 157 214-376 172-333 (727)
111 2v70_A SLIT-2, SLIT homolog 2 99.4 3.7E-13 1.3E-17 130.2 12.0 146 241-405 16-164 (220)
112 2ell_A Acidic leucine-rich nuc 99.4 3.8E-13 1.3E-17 124.3 10.8 131 213-372 22-160 (168)
113 3cvr_A Invasion plasmid antige 99.4 5.8E-13 2E-17 146.5 13.7 133 216-372 60-193 (571)
114 1xeu_A Internalin C; cellular 99.4 6E-13 2.1E-17 132.6 12.4 151 208-372 34-185 (263)
115 2o6s_A Variable lymphocyte rec 99.4 5E-13 1.7E-17 128.4 11.1 131 263-405 27-159 (208)
116 2xot_A Amphoterin-induced prot 99.4 5.6E-13 1.9E-17 139.9 11.9 107 265-372 40-149 (361)
117 3goz_A Leucine-rich repeat-con 99.4 2.1E-13 7.2E-18 143.3 7.9 142 258-407 16-180 (362)
118 3goz_A Leucine-rich repeat-con 99.4 7.3E-14 2.5E-18 146.8 4.0 140 258-406 44-208 (362)
119 2wfh_A SLIT homolog 2 protein 99.4 1.7E-12 5.7E-17 122.6 12.5 108 264-372 31-139 (193)
120 2je0_A Acidic leucine-rich nuc 99.4 4.9E-13 1.7E-17 120.7 8.3 105 260-367 38-148 (149)
121 3cvr_A Invasion plasmid antige 99.4 2.5E-12 8.6E-17 141.4 15.1 174 197-408 63-244 (571)
122 1a9n_A U2A', U2A'; complex (nu 99.4 1.6E-12 5.5E-17 121.0 9.6 108 263-372 41-153 (176)
123 1w8a_A SLIT protein; signaling 99.4 2.4E-12 8.2E-17 121.6 10.6 107 265-372 30-139 (192)
124 1w8a_A SLIT protein; signaling 99.4 1.8E-12 6.2E-17 122.4 9.7 126 267-406 11-138 (192)
125 1dce_A Protein (RAB geranylger 99.4 6.1E-15 2.1E-19 163.2 -8.6 178 214-411 348-550 (567)
126 2je0_A Acidic leucine-rich nuc 99.3 7.7E-13 2.6E-17 119.5 6.7 129 262-402 15-148 (149)
127 2wfh_A SLIT homolog 2 protein 99.3 3.8E-12 1.3E-16 120.1 11.6 124 267-405 13-137 (193)
128 1a9n_A U2A', U2A'; complex (nu 99.3 1.6E-12 5.4E-17 121.0 7.5 135 260-406 15-152 (176)
129 1dce_A Protein (RAB geranylger 99.3 6.5E-12 2.2E-16 138.9 11.3 124 264-400 441-566 (567)
130 3qfl_A MLA10; coiled-coil, (CC 99.3 4E-12 1.4E-16 106.7 7.1 81 4-94 1-82 (115)
131 1ds9_A Outer arm dynein; leuci 99.3 4E-13 1.4E-17 127.8 1.1 138 258-400 42-180 (198)
132 2o6r_A Variable lymphocyte rec 99.3 2.5E-11 8.7E-16 113.0 12.5 108 264-372 28-137 (177)
133 2o6r_A Variable lymphocyte rec 99.2 2.5E-11 8.5E-16 113.1 11.2 129 265-407 8-137 (177)
134 2r9u_A Variable lymphocyte rec 99.2 2.6E-11 8.9E-16 112.1 10.3 104 266-372 14-118 (174)
135 3g39_A Variable lymphocyte rec 99.2 3E-11 1E-15 111.4 10.3 105 265-372 10-115 (170)
136 4b8c_D Glucose-repressible alc 99.2 2.8E-12 9.6E-17 146.6 3.8 134 235-375 222-357 (727)
137 1ds9_A Outer arm dynein; leuci 99.1 1.2E-11 4.1E-16 117.6 -0.7 126 266-406 25-152 (198)
138 2r9u_A Variable lymphocyte rec 99.1 2.9E-10 1E-14 105.0 8.6 87 264-351 33-121 (174)
139 3g39_A Variable lymphocyte rec 99.0 5.6E-10 1.9E-14 102.8 8.8 82 264-345 30-113 (170)
140 3sb4_A Hypothetical leucine ri 98.9 3.1E-09 1E-13 109.8 11.2 89 310-412 225-315 (329)
141 2ifg_A High affinity nerve gro 98.9 3.8E-09 1.3E-13 110.1 9.3 102 268-372 12-116 (347)
142 3sb4_A Hypothetical leucine ri 98.8 1E-08 3.5E-13 105.9 11.4 54 263-317 100-154 (329)
143 2ifg_A High affinity nerve gro 98.7 3.1E-08 1.1E-12 103.1 9.7 93 248-345 20-114 (347)
144 4fdw_A Leucine rich hypothetic 98.7 3.2E-07 1.1E-11 96.7 17.0 233 216-514 114-356 (401)
145 3un9_A NLR family member X1; l 98.6 3.7E-09 1.3E-13 110.5 0.4 17 213-229 70-86 (372)
146 2a5y_B CED-4; apoptosis; HET: 98.6 4.9E-08 1.7E-12 108.0 7.0 85 104-192 123-213 (549)
147 4fdw_A Leucine rich hypothetic 98.4 2E-06 7E-11 90.5 14.3 107 257-368 219-332 (401)
148 4fs7_A Uncharacterized protein 98.4 4.7E-06 1.6E-10 88.1 17.2 106 257-368 64-171 (394)
149 3e4g_A ATP synthase subunit S, 98.4 8.3E-08 2.8E-12 86.6 2.3 40 701-741 115-154 (176)
150 3e4g_A ATP synthase subunit S, 98.4 6.6E-08 2.3E-12 87.2 1.2 68 640-715 83-154 (176)
151 3un9_A NLR family member X1; l 98.3 1.8E-07 6.3E-12 97.5 4.1 57 287-344 155-221 (372)
152 4fs7_A Uncharacterized protein 98.2 3.8E-05 1.3E-09 81.1 18.2 57 282-340 66-123 (394)
153 1vt4_I APAF-1 related killer D 98.2 2.9E-06 9.9E-11 96.4 9.2 60 110-173 130-191 (1221)
154 1io0_A Tropomodulin; LRR prote 98.1 2.4E-06 8.2E-11 79.4 6.0 113 257-372 29-164 (185)
155 2ra8_A Uncharacterized protein 98.1 2.5E-06 8.5E-11 88.1 6.4 141 257-406 165-319 (362)
156 2a5y_B CED-4; apoptosis; HET: 97.9 4.5E-06 1.5E-10 92.2 2.7 155 17-195 290-472 (549)
157 3rw6_A Nuclear RNA export fact 97.8 1.9E-05 6.7E-10 77.0 6.1 47 133-181 24-70 (267)
158 3rw6_A Nuclear RNA export fact 97.8 5.4E-06 1.9E-10 80.9 2.1 41 262-302 168-211 (267)
159 4gt6_A Cell surface protein; l 97.8 0.0027 9.1E-08 66.8 22.7 108 257-368 56-169 (394)
160 1io0_A Tropomodulin; LRR prote 97.8 1.6E-05 5.4E-10 73.8 4.6 87 258-345 59-162 (185)
161 2ra8_A Uncharacterized protein 97.7 4.2E-05 1.4E-09 78.9 7.4 128 235-372 170-320 (362)
162 4gt6_A Cell surface protein; l 97.7 0.0055 1.9E-07 64.4 23.9 144 238-403 65-214 (394)
163 1z6t_A APAF-1, apoptotic prote 97.5 6.1E-05 2.1E-09 84.3 5.2 59 111-173 127-189 (591)
164 3sfz_A APAF-1, apoptotic pepti 97.4 0.00014 4.9E-09 89.3 6.7 60 110-173 126-189 (1249)
165 3rfe_A Platelet glycoprotein I 96.1 0.0083 2.8E-07 51.3 5.8 56 267-324 11-68 (130)
166 1pgv_A TMD-1, tropomodulin TMD 95.3 0.023 7.7E-07 52.1 5.8 111 258-370 35-168 (197)
167 4h09_A Hypothetical leucine ri 95.0 0.045 1.5E-06 56.9 8.2 107 258-368 211-319 (379)
168 4h09_A Hypothetical leucine ri 94.7 0.12 4.1E-06 53.7 10.3 125 281-421 211-338 (379)
169 3rfe_A Platelet glycoprotein I 94.3 0.054 1.8E-06 46.2 5.3 55 315-372 12-68 (130)
170 3ec2_A DNA replication protein 93.5 0.13 4.4E-06 46.8 6.8 51 132-191 37-87 (180)
171 1jbk_A CLPB protein; beta barr 93.5 0.085 2.9E-06 48.4 5.6 37 122-158 32-68 (195)
172 3sfz_A APAF-1, apoptotic pepti 93.1 0.03 1E-06 68.6 2.3 81 87-194 372-452 (1249)
173 1xjc_A MOBB protein homolog; s 92.9 0.084 2.9E-06 47.1 4.3 27 133-159 4-30 (169)
174 3lw7_A Adenylate kinase relate 92.8 0.061 2.1E-06 48.6 3.4 22 134-156 2-23 (179)
175 3kb2_A SPBC2 prophage-derived 92.5 0.078 2.7E-06 47.8 3.7 24 134-157 2-25 (173)
176 3vaa_A Shikimate kinase, SK; s 92.5 0.078 2.7E-06 49.2 3.8 25 133-157 25-49 (199)
177 2p65_A Hypothetical protein PF 92.5 0.11 3.8E-06 47.3 4.7 37 122-158 32-68 (187)
178 3e70_C DPA, signal recognition 92.4 0.43 1.5E-05 47.9 9.1 27 133-159 129-155 (328)
179 1rz3_A Hypothetical protein rb 92.2 0.16 5.5E-06 47.1 5.5 37 122-158 8-47 (201)
180 3c8u_A Fructokinase; YP_612366 92.2 0.12 4E-06 48.4 4.5 37 122-158 9-47 (208)
181 3fwy_A Light-independent proto 92.2 0.11 3.6E-06 52.1 4.4 29 131-159 46-74 (314)
182 1zp6_A Hypothetical protein AT 92.0 0.079 2.7E-06 48.8 3.0 23 134-156 10-32 (191)
183 1kag_A SKI, shikimate kinase I 91.8 0.088 3E-06 47.5 3.2 24 134-157 5-28 (173)
184 1w5s_A Origin recognition comp 91.8 0.1 3.5E-06 54.9 4.0 57 132-190 49-111 (412)
185 1kgd_A CASK, peripheral plasma 91.7 0.1 3.5E-06 47.5 3.5 24 134-157 6-29 (180)
186 2qen_A Walker-type ATPase; unk 91.7 0.21 7.2E-06 51.0 6.3 42 110-157 14-55 (350)
187 1qhx_A CPT, protein (chloramph 91.7 0.1 3.5E-06 47.3 3.4 24 134-157 4-27 (178)
188 3uie_A Adenylyl-sulfate kinase 91.6 0.12 4E-06 48.0 3.7 28 131-158 23-50 (200)
189 2chg_A Replication factor C sm 91.5 0.27 9.3E-06 46.2 6.4 37 122-158 27-63 (226)
190 3trf_A Shikimate kinase, SK; a 91.5 0.12 4.2E-06 47.1 3.8 25 133-157 5-29 (185)
191 3t61_A Gluconokinase; PSI-biol 91.4 0.11 3.7E-06 48.4 3.3 25 133-157 18-42 (202)
192 1knq_A Gluconate kinase; ALFA/ 91.4 0.13 4.4E-06 46.5 3.7 25 133-157 8-32 (175)
193 4eun_A Thermoresistant glucoki 91.3 0.14 4.7E-06 47.5 4.0 26 132-157 28-53 (200)
194 2kjq_A DNAA-related protein; s 91.3 0.11 3.9E-06 45.4 3.1 28 132-159 35-62 (149)
195 2jaq_A Deoxyguanosine kinase; 91.3 0.13 4.4E-06 47.9 3.7 24 135-158 2-25 (205)
196 1zuh_A Shikimate kinase; alpha 91.1 0.14 4.9E-06 45.8 3.8 25 133-157 7-31 (168)
197 3iij_A Coilin-interacting nucl 91.0 0.13 4.4E-06 46.8 3.3 25 133-157 11-35 (180)
198 2qby_A CDC6 homolog 1, cell di 90.9 0.29 9.8E-06 50.8 6.3 37 122-158 30-70 (386)
199 1njg_A DNA polymerase III subu 90.8 0.25 8.5E-06 47.2 5.5 37 122-158 33-70 (250)
200 2bdt_A BH3686; alpha-beta prot 90.7 0.15 5.1E-06 46.8 3.5 22 134-155 3-24 (189)
201 4gp7_A Metallophosphoesterase; 90.7 0.11 3.9E-06 46.7 2.6 21 134-154 10-30 (171)
202 1cke_A CK, MSSA, protein (cyti 90.7 0.16 5.3E-06 48.2 3.7 24 134-157 6-29 (227)
203 2yvu_A Probable adenylyl-sulfa 90.6 0.19 6.6E-06 45.9 4.2 27 133-159 13-39 (186)
204 2fna_A Conserved hypothetical 90.6 0.25 8.6E-06 50.5 5.5 41 109-157 14-54 (357)
205 1nks_A Adenylate kinase; therm 90.6 0.16 5.5E-06 46.7 3.6 25 134-158 2-26 (194)
206 2if2_A Dephospho-COA kinase; a 90.6 0.15 5E-06 47.5 3.4 22 134-155 2-23 (204)
207 1ly1_A Polynucleotide kinase; 90.5 0.15 5.3E-06 46.2 3.5 22 134-155 3-24 (181)
208 1kht_A Adenylate kinase; phosp 90.5 0.17 5.8E-06 46.4 3.8 25 134-158 4-28 (192)
209 3tr0_A Guanylate kinase, GMP k 90.5 0.15 5.3E-06 47.3 3.5 23 134-156 8-30 (205)
210 1odf_A YGR205W, hypothetical 3 90.5 0.16 5.6E-06 50.1 3.7 28 132-159 30-57 (290)
211 2j41_A Guanylate kinase; GMP, 90.4 0.16 5.4E-06 47.4 3.5 24 134-157 7-30 (207)
212 2qor_A Guanylate kinase; phosp 90.4 0.14 4.6E-06 47.8 3.0 25 133-157 12-36 (204)
213 3asz_A Uridine kinase; cytidin 90.4 0.15 5.3E-06 47.7 3.4 26 133-158 6-31 (211)
214 1via_A Shikimate kinase; struc 90.4 0.16 5.4E-06 45.9 3.3 24 134-157 5-28 (175)
215 2qby_B CDC6 homolog 3, cell di 90.3 0.34 1.2E-05 50.2 6.3 30 130-159 42-71 (384)
216 2qt1_A Nicotinamide riboside k 90.2 0.14 4.9E-06 47.7 3.0 24 133-156 21-44 (207)
217 1np6_A Molybdopterin-guanine d 90.2 0.24 8.1E-06 44.6 4.3 26 133-158 6-31 (174)
218 3a00_A Guanylate kinase, GMP k 90.2 0.15 5.1E-06 46.6 3.0 24 134-157 2-25 (186)
219 1sxj_B Activator 1 37 kDa subu 90.2 0.71 2.4E-05 46.3 8.4 37 122-158 31-67 (323)
220 1uf9_A TT1252 protein; P-loop, 90.1 0.19 6.5E-06 46.6 3.7 25 131-155 6-30 (203)
221 1ye8_A Protein THEP1, hypothet 90.0 0.2 7E-06 45.3 3.7 24 135-158 2-25 (178)
222 1jjv_A Dephospho-COA kinase; P 90.0 0.16 5.4E-06 47.4 3.1 22 134-155 3-24 (206)
223 2bbw_A Adenylate kinase 4, AK4 90.0 0.19 6.5E-06 48.4 3.8 25 133-157 27-51 (246)
224 2iyv_A Shikimate kinase, SK; t 90.0 0.17 5.7E-06 46.2 3.2 24 134-157 3-26 (184)
225 4e22_A Cytidylate kinase; P-lo 90.0 0.18 6.2E-06 48.7 3.6 25 133-157 27-51 (252)
226 2grj_A Dephospho-COA kinase; T 89.9 0.2 7E-06 45.9 3.6 24 133-156 12-35 (192)
227 2rhm_A Putative kinase; P-loop 89.9 0.2 6.8E-06 46.0 3.6 24 134-157 6-29 (193)
228 2w58_A DNAI, primosome compone 89.8 0.24 8.1E-06 45.9 4.1 25 134-158 55-79 (202)
229 1pgv_A TMD-1, tropomodulin TMD 89.8 0.33 1.1E-05 44.4 4.8 88 258-345 64-168 (197)
230 1y63_A LMAJ004144AAA protein; 89.8 0.21 7.2E-06 45.5 3.6 24 133-156 10-33 (184)
231 1e6c_A Shikimate kinase; phosp 89.7 0.19 6.6E-06 45.2 3.3 24 134-157 3-26 (173)
232 1tev_A UMP-CMP kinase; ploop, 89.7 0.21 7.3E-06 45.9 3.7 24 134-157 4-27 (196)
233 2hf9_A Probable hydrogenase ni 89.7 0.34 1.2E-05 45.7 5.3 29 129-157 34-62 (226)
234 3aez_A Pantothenate kinase; tr 89.7 0.19 6.4E-06 50.2 3.5 26 133-158 90-115 (312)
235 2pt5_A Shikimate kinase, SK; a 89.7 0.23 7.7E-06 44.4 3.7 23 135-157 2-24 (168)
236 2f1r_A Molybdopterin-guanine d 89.6 0.15 5E-06 45.8 2.4 27 134-160 3-29 (171)
237 2c95_A Adenylate kinase 1; tra 89.6 0.21 7.3E-06 45.9 3.7 25 133-157 9-33 (196)
238 2ze6_A Isopentenyl transferase 89.6 0.22 7.4E-06 48.2 3.7 24 134-157 2-25 (253)
239 2xxa_A Signal recognition part 89.5 1.1 3.7E-05 47.0 9.2 28 133-160 100-127 (433)
240 1ukz_A Uridylate kinase; trans 89.4 0.23 8E-06 46.0 3.8 26 132-157 14-39 (203)
241 3cm0_A Adenylate kinase; ATP-b 89.4 0.24 8E-06 45.2 3.7 24 134-157 5-28 (186)
242 2pbr_A DTMP kinase, thymidylat 89.4 0.24 8.1E-06 45.5 3.7 24 135-158 2-25 (195)
243 2bwj_A Adenylate kinase 5; pho 89.4 0.23 7.9E-06 45.8 3.7 24 134-157 13-36 (199)
244 1lvg_A Guanylate kinase, GMP k 89.3 0.19 6.5E-06 46.5 3.0 24 134-157 5-28 (198)
245 3dm5_A SRP54, signal recogniti 89.3 1.5 5.2E-05 45.6 10.0 28 133-160 100-127 (443)
246 1zu4_A FTSY; GTPase, signal re 89.2 3.1 0.00011 41.5 12.0 27 133-159 105-131 (320)
247 1znw_A Guanylate kinase, GMP k 89.2 0.2 7E-06 46.7 3.1 25 133-157 20-44 (207)
248 1gtv_A TMK, thymidylate kinase 89.1 0.14 4.8E-06 48.0 2.0 24 135-158 2-25 (214)
249 3nwj_A ATSK2; P loop, shikimat 89.1 0.22 7.5E-06 47.8 3.3 24 134-157 49-72 (250)
250 1htw_A HI0065; nucleotide-bind 89.0 0.24 8.2E-06 43.7 3.3 25 133-157 33-57 (158)
251 2i3b_A HCR-ntpase, human cance 88.9 0.25 8.6E-06 45.2 3.4 25 134-158 2-26 (189)
252 3tau_A Guanylate kinase, GMP k 88.9 0.25 8.5E-06 46.1 3.5 25 133-157 8-32 (208)
253 2plr_A DTMP kinase, probable t 88.9 0.27 9.1E-06 46.0 3.7 26 134-159 5-30 (213)
254 1qf9_A UMP/CMP kinase, protein 88.8 0.26 9.1E-06 45.1 3.6 24 134-157 7-30 (194)
255 2cdn_A Adenylate kinase; phosp 88.8 0.28 9.4E-06 45.5 3.7 24 134-157 21-44 (201)
256 1z6g_A Guanylate kinase; struc 88.6 0.23 7.7E-06 46.8 3.0 24 134-157 24-47 (218)
257 2vli_A Antibiotic resistance p 88.5 0.21 7E-06 45.5 2.6 24 134-157 6-29 (183)
258 2wsm_A Hydrogenase expression/ 88.5 0.38 1.3E-05 45.3 4.6 28 130-157 27-54 (221)
259 2jeo_A Uridine-cytidine kinase 88.4 0.27 9.1E-06 47.3 3.5 25 133-157 25-49 (245)
260 2pez_A Bifunctional 3'-phospho 88.4 0.31 1.1E-05 44.1 3.7 25 134-158 6-30 (179)
261 1uj2_A Uridine-cytidine kinase 88.4 0.28 9.5E-06 47.4 3.6 26 132-157 21-46 (252)
262 3bos_A Putative DNA replicatio 88.3 0.48 1.6E-05 45.1 5.2 37 123-159 42-78 (242)
263 1rj9_A FTSY, signal recognitio 88.1 0.33 1.1E-05 48.2 4.0 27 133-159 102-128 (304)
264 2wwf_A Thymidilate kinase, put 88.1 0.31 1.1E-05 45.5 3.7 31 134-165 11-41 (212)
265 2z0h_A DTMP kinase, thymidylat 88.0 0.33 1.1E-05 44.7 3.7 24 135-158 2-25 (197)
266 1nn5_A Similar to deoxythymidy 88.0 0.37 1.3E-05 45.1 4.1 32 133-165 9-40 (215)
267 1m7g_A Adenylylsulfate kinase; 88.0 0.33 1.1E-05 45.3 3.7 27 132-158 24-50 (211)
268 3ney_A 55 kDa erythrocyte memb 87.9 0.34 1.2E-05 44.4 3.6 25 133-157 19-43 (197)
269 2ga8_A Hypothetical 39.9 kDa p 87.8 0.47 1.6E-05 47.7 4.8 29 130-158 21-49 (359)
270 1vht_A Dephospho-COA kinase; s 87.8 0.31 1.1E-05 45.8 3.5 22 134-155 5-26 (218)
271 3ake_A Cytidylate kinase; CMP 87.7 0.35 1.2E-05 44.9 3.7 23 135-157 4-26 (208)
272 2onk_A Molybdate/tungstate ABC 87.7 0.33 1.1E-05 46.3 3.5 22 134-155 25-46 (240)
273 3end_A Light-independent proto 87.6 0.41 1.4E-05 47.8 4.4 31 130-160 38-68 (307)
274 3b9q_A Chloroplast SRP recepto 87.6 0.39 1.3E-05 47.7 4.1 26 133-158 100-125 (302)
275 3a4m_A L-seryl-tRNA(SEC) kinas 87.5 0.34 1.2E-05 47.0 3.6 26 133-158 4-29 (260)
276 2pcj_A ABC transporter, lipopr 87.4 0.3 1E-05 46.1 3.0 22 134-155 31-52 (224)
277 1s96_A Guanylate kinase, GMP k 87.4 0.35 1.2E-05 45.4 3.5 25 133-157 16-40 (219)
278 3tif_A Uncharacterized ABC tra 87.3 0.31 1.1E-05 46.4 3.1 22 134-155 32-53 (235)
279 1iqp_A RFCS; clamp loader, ext 87.3 0.59 2E-05 47.0 5.5 37 122-158 35-71 (327)
280 1aky_A Adenylate kinase; ATP:A 87.3 0.38 1.3E-05 45.3 3.7 24 134-157 5-28 (220)
281 3kl4_A SRP54, signal recogniti 87.3 1.5 5.2E-05 45.6 8.5 28 133-160 97-124 (433)
282 1j8m_F SRP54, signal recogniti 87.2 1.9 6.5E-05 42.5 8.9 27 133-159 98-124 (297)
283 2v1u_A Cell division control p 87.2 0.49 1.7E-05 49.0 4.9 37 122-158 29-69 (387)
284 2px0_A Flagellar biosynthesis 87.2 0.38 1.3E-05 47.6 3.8 28 132-159 104-131 (296)
285 3b85_A Phosphate starvation-in 87.1 0.31 1.1E-05 45.3 2.9 32 123-156 14-45 (208)
286 1sq5_A Pantothenate kinase; P- 87.1 0.34 1.2E-05 48.4 3.4 26 132-157 79-104 (308)
287 2cbz_A Multidrug resistance-as 86.9 0.34 1.2E-05 46.2 3.1 22 134-155 32-53 (237)
288 1zd8_A GTP:AMP phosphotransfer 86.9 0.36 1.2E-05 45.7 3.3 25 133-157 7-31 (227)
289 3fb4_A Adenylate kinase; psych 86.9 0.42 1.4E-05 44.8 3.7 23 135-157 2-24 (216)
290 2f6r_A COA synthase, bifunctio 86.7 0.33 1.1E-05 47.7 3.0 24 132-155 74-97 (281)
291 3d3q_A TRNA delta(2)-isopenten 86.7 0.4 1.4E-05 48.0 3.6 24 134-157 8-31 (340)
292 3r20_A Cytidylate kinase; stru 86.6 0.45 1.5E-05 45.0 3.7 25 133-157 9-33 (233)
293 1b0u_A Histidine permease; ABC 86.5 0.36 1.2E-05 46.8 3.1 22 134-155 33-54 (262)
294 3tqc_A Pantothenate kinase; bi 86.5 0.39 1.3E-05 47.9 3.5 25 133-157 92-116 (321)
295 2d2e_A SUFC protein; ABC-ATPas 86.5 0.39 1.3E-05 46.2 3.3 22 134-155 30-51 (250)
296 1fnn_A CDC6P, cell division co 86.4 0.74 2.5E-05 47.7 5.7 24 135-158 46-69 (389)
297 1sgw_A Putative ABC transporte 86.3 0.34 1.2E-05 45.3 2.7 22 134-155 36-57 (214)
298 2v54_A DTMP kinase, thymidylat 86.3 0.43 1.5E-05 44.2 3.5 24 134-157 5-28 (204)
299 1ji0_A ABC transporter; ATP bi 86.2 0.39 1.3E-05 45.9 3.1 22 134-155 33-54 (240)
300 2olj_A Amino acid ABC transpor 86.2 0.39 1.3E-05 46.5 3.1 22 134-155 51-72 (263)
301 2pze_A Cystic fibrosis transme 86.2 0.39 1.3E-05 45.5 3.1 23 134-156 35-57 (229)
302 3gfo_A Cobalt import ATP-bindi 86.1 0.39 1.3E-05 46.8 3.1 22 134-155 35-56 (275)
303 2og2_A Putative signal recogni 86.0 0.52 1.8E-05 47.8 4.1 27 133-159 157-183 (359)
304 1g6h_A High-affinity branched- 86.0 0.4 1.4E-05 46.4 3.1 22 134-155 34-55 (257)
305 2zu0_C Probable ATP-dependent 86.0 0.42 1.4E-05 46.5 3.3 22 134-155 47-68 (267)
306 4g1u_C Hemin import ATP-bindin 86.0 0.4 1.4E-05 46.6 3.1 22 134-155 38-59 (266)
307 2ff7_A Alpha-hemolysin translo 86.0 0.4 1.4E-05 46.0 3.1 22 134-155 36-57 (247)
308 3dl0_A Adenylate kinase; phosp 85.9 0.45 1.5E-05 44.6 3.4 22 135-156 2-23 (216)
309 3lnc_A Guanylate kinase, GMP k 85.9 0.28 9.4E-06 46.7 1.9 23 134-156 28-51 (231)
310 3p32_A Probable GTPase RV1496/ 85.9 0.97 3.3E-05 46.1 6.1 36 123-158 67-104 (355)
311 1zak_A Adenylate kinase; ATP:A 85.7 0.44 1.5E-05 44.9 3.2 24 134-157 6-29 (222)
312 1mv5_A LMRA, multidrug resista 85.7 0.42 1.4E-05 45.8 3.1 22 134-155 29-50 (243)
313 1vpl_A ABC transporter, ATP-bi 85.7 0.43 1.5E-05 46.1 3.1 22 134-155 42-63 (256)
314 2yhs_A FTSY, cell division pro 85.7 0.54 1.9E-05 49.6 4.1 26 133-158 293-318 (503)
315 2ghi_A Transport protein; mult 85.4 0.44 1.5E-05 46.1 3.1 23 134-156 47-69 (260)
316 2ehv_A Hypothetical protein PH 85.3 0.44 1.5E-05 45.8 3.1 23 134-156 31-53 (251)
317 1vma_A Cell division protein F 85.3 0.6 2.1E-05 46.3 4.1 27 133-159 104-130 (306)
318 2ixe_A Antigen peptide transpo 85.3 0.45 1.6E-05 46.3 3.1 23 134-156 46-68 (271)
319 3n70_A Transport activator; si 85.2 0.52 1.8E-05 40.8 3.2 23 135-157 26-48 (145)
320 2qi9_C Vitamin B12 import ATP- 85.2 0.46 1.6E-05 45.6 3.1 23 134-156 27-49 (249)
321 1vt4_I APAF-1 related killer D 85.2 0.4 1.4E-05 55.3 3.0 77 84-188 360-437 (1221)
322 2yz2_A Putative ABC transporte 85.1 0.47 1.6E-05 46.1 3.1 22 134-155 34-55 (266)
323 1oix_A RAS-related protein RAB 85.0 0.53 1.8E-05 43.1 3.4 24 133-156 29-52 (191)
324 3be4_A Adenylate kinase; malar 85.0 0.57 1.9E-05 43.9 3.6 24 134-157 6-29 (217)
325 2xb4_A Adenylate kinase; ATP-b 85.0 0.59 2E-05 44.1 3.7 23 135-157 2-24 (223)
326 1e4v_A Adenylate kinase; trans 84.9 0.58 2E-05 43.8 3.6 23 135-157 2-24 (214)
327 4a74_A DNA repair and recombin 84.9 0.49 1.7E-05 44.7 3.2 24 134-157 26-49 (231)
328 1in4_A RUVB, holliday junction 84.9 0.5 1.7E-05 47.8 3.4 25 133-157 51-75 (334)
329 2ihy_A ABC transporter, ATP-bi 84.9 0.48 1.7E-05 46.3 3.1 23 134-156 48-70 (279)
330 1yrb_A ATP(GTP)binding protein 84.8 0.63 2.2E-05 45.1 4.0 26 133-158 14-39 (262)
331 2nq2_C Hypothetical ABC transp 84.7 0.49 1.7E-05 45.6 3.1 23 134-156 32-54 (253)
332 1q3t_A Cytidylate kinase; nucl 84.7 0.61 2.1E-05 44.4 3.8 25 133-157 16-40 (236)
333 3h4m_A Proteasome-activating n 84.7 1.2 4.1E-05 43.7 6.0 26 132-157 50-75 (285)
334 3te6_A Regulatory protein SIR3 84.3 2.2 7.4E-05 42.4 7.6 66 127-192 39-107 (318)
335 3sop_A Neuronal-specific septi 84.3 0.56 1.9E-05 45.6 3.3 23 135-157 4-26 (270)
336 1cp2_A CP2, nitrogenase iron p 84.2 0.7 2.4E-05 45.0 4.0 26 134-159 2-27 (269)
337 2vp4_A Deoxynucleoside kinase; 84.1 0.39 1.3E-05 45.6 2.1 24 133-156 20-43 (230)
338 1ak2_A Adenylate kinase isoenz 84.1 0.67 2.3E-05 44.0 3.7 25 133-157 16-40 (233)
339 3tlx_A Adenylate kinase 2; str 84.1 0.68 2.3E-05 44.3 3.7 26 132-157 28-53 (243)
340 2wji_A Ferrous iron transport 84.0 0.6 2E-05 41.4 3.1 22 134-155 4-25 (165)
341 1sxj_D Activator 1 41 kDa subu 83.9 0.9 3.1E-05 46.3 4.9 37 122-158 47-83 (353)
342 1ls1_A Signal recognition part 83.8 0.78 2.7E-05 45.3 4.2 27 133-159 98-124 (295)
343 2p5t_B PEZT; postsegregational 83.8 0.48 1.7E-05 45.7 2.6 25 133-157 32-56 (253)
344 1ixz_A ATP-dependent metallopr 83.7 0.63 2.2E-05 44.9 3.4 22 136-157 52-73 (254)
345 1lv7_A FTSH; alpha/beta domain 83.5 0.67 2.3E-05 44.8 3.5 23 135-157 47-69 (257)
346 3t15_A Ribulose bisphosphate c 83.5 0.7 2.4E-05 45.7 3.7 25 133-157 36-60 (293)
347 3geh_A MNME, tRNA modification 83.5 2.8 9.5E-05 44.3 8.4 78 66-156 162-247 (462)
348 2f9l_A RAB11B, member RAS onco 83.4 0.7 2.4E-05 42.5 3.5 23 134-156 6-28 (199)
349 2pjz_A Hypothetical protein ST 83.4 0.61 2.1E-05 45.1 3.1 22 134-155 31-52 (263)
350 1gvn_B Zeta; postsegregational 83.4 0.66 2.3E-05 45.7 3.4 25 133-157 33-57 (287)
351 2eyu_A Twitching motility prot 83.4 0.68 2.3E-05 44.8 3.4 26 133-158 25-50 (261)
352 2x8a_A Nuclear valosin-contain 83.4 0.66 2.3E-05 45.3 3.4 22 136-157 47-68 (274)
353 2dyk_A GTP-binding protein; GT 83.3 0.75 2.6E-05 40.3 3.5 23 134-156 2-24 (161)
354 1l8q_A Chromosomal replication 83.3 0.66 2.2E-05 46.7 3.5 27 133-159 37-63 (324)
355 2zej_A Dardarin, leucine-rich 83.1 0.62 2.1E-05 42.2 2.9 21 135-155 4-24 (184)
356 4eaq_A DTMP kinase, thymidylat 83.0 1.2 4.1E-05 42.1 4.9 31 134-166 27-57 (229)
357 1a7j_A Phosphoribulokinase; tr 83.0 0.47 1.6E-05 46.8 2.2 27 132-158 4-30 (290)
358 2afh_E Nitrogenase iron protei 82.9 0.88 3E-05 44.9 4.2 27 133-159 2-28 (289)
359 2v9p_A Replication protein E1; 82.9 0.68 2.3E-05 45.7 3.2 25 133-157 126-150 (305)
360 2e87_A Hypothetical protein PH 82.8 7.7 0.00026 39.3 11.4 24 132-155 166-189 (357)
361 3nh6_A ATP-binding cassette SU 82.8 0.5 1.7E-05 46.8 2.2 23 133-155 80-102 (306)
362 3umf_A Adenylate kinase; rossm 82.8 0.91 3.1E-05 42.4 3.9 26 132-157 28-53 (217)
363 1ex7_A Guanylate kinase; subst 82.7 0.75 2.6E-05 41.7 3.2 23 134-156 2-24 (186)
364 2bbs_A Cystic fibrosis transme 82.5 0.67 2.3E-05 45.6 3.0 22 134-155 65-86 (290)
365 2v3c_C SRP54, signal recogniti 82.5 0.65 2.2E-05 48.6 3.1 27 133-159 99-125 (432)
366 2ce2_X GTPase HRAS; signaling 82.5 0.74 2.5E-05 40.5 3.1 22 135-156 5-26 (166)
367 3con_A GTPase NRAS; structural 82.4 0.76 2.6E-05 41.8 3.2 22 135-156 23-44 (190)
368 3crm_A TRNA delta(2)-isopenten 82.3 0.79 2.7E-05 45.6 3.4 24 134-157 6-29 (323)
369 2cvh_A DNA repair and recombin 82.2 0.73 2.5E-05 43.2 3.1 22 134-155 21-42 (220)
370 2ocp_A DGK, deoxyguanosine kin 82.1 0.78 2.7E-05 43.8 3.3 24 134-157 3-26 (241)
371 1z2a_A RAS-related protein RAB 82.1 0.81 2.8E-05 40.4 3.2 23 134-156 6-28 (168)
372 3kta_A Chromosome segregation 82.1 0.79 2.7E-05 41.4 3.2 23 134-156 27-49 (182)
373 2qz4_A Paraplegin; AAA+, SPG7, 82.0 0.82 2.8E-05 44.2 3.5 24 134-157 40-63 (262)
374 3tui_C Methionine import ATP-b 81.8 0.8 2.7E-05 46.4 3.3 22 134-155 55-76 (366)
375 1iy2_A ATP-dependent metallopr 81.7 0.82 2.8E-05 44.8 3.4 22 136-157 76-97 (278)
376 1nij_A Hypothetical protein YJ 81.7 0.64 2.2E-05 46.6 2.6 25 132-156 3-27 (318)
377 2z4s_A Chromosomal replication 81.6 1.3 4.5E-05 46.6 5.1 26 133-158 130-155 (440)
378 3co5_A Putative two-component 81.5 0.93 3.2E-05 39.1 3.3 21 136-156 30-50 (143)
379 2wjg_A FEOB, ferrous iron tran 81.5 0.82 2.8E-05 41.4 3.1 22 134-155 8-29 (188)
380 3cf0_A Transitional endoplasmi 81.3 0.9 3.1E-05 45.1 3.5 25 133-157 49-73 (301)
381 2w0m_A SSO2452; RECA, SSPF, un 81.2 1.1 3.8E-05 42.3 4.1 25 134-158 24-48 (235)
382 3pvs_A Replication-associated 81.1 0.99 3.4E-05 47.6 3.9 35 123-157 40-74 (447)
383 1c1y_A RAS-related protein RAP 81.0 0.93 3.2E-05 40.0 3.2 22 135-156 5-26 (167)
384 1d2n_A N-ethylmaleimide-sensit 81.0 1.6 5.4E-05 42.5 5.2 35 123-157 51-88 (272)
385 2gj8_A MNME, tRNA modification 80.9 0.81 2.8E-05 40.9 2.8 23 134-156 5-27 (172)
386 1u8z_A RAS-related protein RAL 80.8 0.95 3.2E-05 39.9 3.2 23 134-156 5-27 (168)
387 2atv_A RERG, RAS-like estrogen 80.8 1.1 3.7E-05 41.1 3.7 34 123-156 18-51 (196)
388 1ltq_A Polynucleotide kinase; 80.7 0.94 3.2E-05 45.0 3.5 23 134-156 3-25 (301)
389 2ged_A SR-beta, signal recogni 80.6 1 3.5E-05 41.0 3.5 24 133-156 48-71 (193)
390 1sxj_C Activator 1 40 kDa subu 80.6 1.7 5.9E-05 44.0 5.4 37 122-158 35-71 (340)
391 4dzz_A Plasmid partitioning pr 80.5 1.2 4E-05 41.2 3.8 26 134-159 2-28 (206)
392 3t1o_A Gliding protein MGLA; G 80.3 0.98 3.4E-05 41.2 3.2 23 134-156 15-37 (198)
393 3ch4_B Pmkase, phosphomevalona 80.3 1.1 3.7E-05 41.0 3.4 43 133-187 11-54 (202)
394 1z08_A RAS-related protein RAB 80.3 1 3.5E-05 39.9 3.2 23 134-156 7-29 (170)
395 3hjn_A DTMP kinase, thymidylat 80.1 1.3 4.5E-05 40.6 4.0 26 136-161 3-28 (197)
396 2r8r_A Sensor protein; KDPD, P 80.0 1.5 5.1E-05 40.9 4.2 32 135-167 8-39 (228)
397 1n0w_A DNA repair protein RAD5 79.9 0.96 3.3E-05 43.1 3.1 23 134-156 25-47 (243)
398 1r8s_A ADP-ribosylation factor 79.9 1.1 3.9E-05 39.3 3.4 21 136-156 3-23 (164)
399 1z47_A CYSA, putative ABC-tran 79.9 1 3.4E-05 45.6 3.3 22 134-155 42-63 (355)
400 1nlf_A Regulatory protein REPA 79.9 0.93 3.2E-05 44.4 3.0 25 134-158 31-55 (279)
401 3q85_A GTP-binding protein REM 79.9 0.95 3.2E-05 40.1 2.9 21 135-155 4-24 (169)
402 3ihw_A Centg3; RAS, centaurin, 79.8 1.1 3.6E-05 40.7 3.2 22 134-155 21-42 (184)
403 2h92_A Cytidylate kinase; ross 79.7 1 3.5E-05 42.2 3.1 23 134-156 4-26 (219)
404 2qnr_A Septin-2, protein NEDD5 79.7 0.88 3E-05 45.2 2.8 21 135-155 20-40 (301)
405 3q72_A GTP-binding protein RAD 79.6 0.95 3.2E-05 39.9 2.8 21 135-155 4-24 (166)
406 2nzj_A GTP-binding protein REM 79.6 0.97 3.3E-05 40.3 2.9 22 134-155 5-26 (175)
407 2fn4_A P23, RAS-related protei 79.6 1.1 3.6E-05 40.3 3.1 24 133-156 9-32 (181)
408 3gmt_A Adenylate kinase; ssgci 79.6 1.2 4.1E-05 41.8 3.5 24 134-157 9-32 (230)
409 1m7b_A RND3/RHOE small GTP-bin 79.5 1.1 3.6E-05 40.6 3.1 23 134-156 8-30 (184)
410 3fdi_A Uncharacterized protein 79.4 1.2 4.1E-05 41.0 3.5 24 134-157 7-30 (201)
411 1svm_A Large T antigen; AAA+ f 79.3 1.1 3.8E-05 45.8 3.5 25 132-156 168-192 (377)
412 1z0j_A RAB-22, RAS-related pro 79.3 1.1 3.9E-05 39.5 3.2 22 135-156 8-29 (170)
413 1cr0_A DNA primase/helicase; R 79.2 1 3.6E-05 44.5 3.2 26 134-159 36-61 (296)
414 1kao_A RAP2A; GTP-binding prot 79.2 1.1 3.9E-05 39.3 3.2 22 135-156 5-26 (167)
415 3b9p_A CG5977-PA, isoform A; A 79.2 1.2 3.9E-05 44.2 3.5 25 133-157 54-78 (297)
416 3fvq_A Fe(3+) IONS import ATP- 79.2 1.1 3.6E-05 45.5 3.2 22 134-155 31-52 (359)
417 1ek0_A Protein (GTP-binding pr 79.2 1.2 3.9E-05 39.4 3.2 22 135-156 5-26 (170)
418 2erx_A GTP-binding protein DI- 79.1 1 3.5E-05 39.9 2.9 21 135-155 5-25 (172)
419 1sxj_E Activator 1 40 kDa subu 79.0 1.2 4.1E-05 45.4 3.7 36 122-157 24-60 (354)
420 2j69_A Bacterial dynamin-like 79.0 4.5 0.00015 45.3 8.6 78 67-156 15-92 (695)
421 2chq_A Replication factor C sm 79.0 1.4 5E-05 43.9 4.2 36 122-157 27-62 (319)
422 2ffh_A Protein (FFH); SRP54, s 78.9 1.4 4.8E-05 45.8 4.1 27 133-159 98-124 (425)
423 2yyz_A Sugar ABC transporter, 78.9 1.1 3.8E-05 45.4 3.3 22 134-155 30-51 (359)
424 3c5c_A RAS-like protein 12; GD 78.8 1.2 4E-05 40.5 3.2 23 134-156 22-44 (187)
425 3kkq_A RAS-related protein M-R 78.8 1.2 4.1E-05 40.1 3.2 24 133-156 18-41 (183)
426 4edh_A DTMP kinase, thymidylat 78.7 1.6 5.5E-05 40.6 4.1 33 134-167 7-39 (213)
427 2it1_A 362AA long hypothetical 78.7 1.1 3.9E-05 45.4 3.3 22 134-155 30-51 (362)
428 1r2q_A RAS-related protein RAB 78.7 1.2 4.2E-05 39.3 3.2 22 135-156 8-29 (170)
429 1z0f_A RAB14, member RAS oncog 78.6 1.2 4.1E-05 39.8 3.2 24 133-156 15-38 (179)
430 2j37_W Signal recognition part 78.5 1.5 5E-05 46.8 4.2 27 133-159 101-127 (504)
431 1g29_1 MALK, maltose transport 78.5 1.2 4E-05 45.6 3.3 22 134-155 30-51 (372)
432 1ky3_A GTP-binding protein YPT 78.5 1.2 4.2E-05 39.8 3.2 24 133-156 8-31 (182)
433 3ld9_A DTMP kinase, thymidylat 78.4 1.6 5.6E-05 40.8 4.1 35 133-167 21-55 (223)
434 2qgz_A Helicase loader, putati 78.3 1.6 5.3E-05 43.5 4.2 26 133-158 152-177 (308)
435 3tw8_B RAS-related protein RAB 78.3 1.1 3.8E-05 40.1 2.9 23 133-155 9-31 (181)
436 1wms_A RAB-9, RAB9, RAS-relate 78.3 1.3 4.3E-05 39.6 3.2 22 134-155 8-29 (177)
437 3lv8_A DTMP kinase, thymidylat 78.3 1.7 5.7E-05 41.2 4.1 30 134-164 28-57 (236)
438 1v43_A Sugar-binding transport 78.3 1.2 4.1E-05 45.4 3.3 22 134-155 38-59 (372)
439 3cr8_A Sulfate adenylyltranfer 78.2 0.97 3.3E-05 48.9 2.8 26 133-158 369-394 (552)
440 1lw7_A Transcriptional regulat 78.2 1.1 3.9E-05 45.8 3.2 25 133-157 170-194 (365)
441 4dsu_A GTPase KRAS, isoform 2B 78.2 1.3 4.3E-05 40.1 3.2 22 135-156 6-27 (189)
442 3cbq_A GTP-binding protein REM 78.2 0.95 3.2E-05 41.5 2.4 22 133-154 23-44 (195)
443 3a8t_A Adenylate isopentenyltr 78.2 1 3.4E-05 45.0 2.6 23 134-156 41-63 (339)
444 1pui_A ENGB, probable GTP-bind 78.1 0.7 2.4E-05 42.9 1.5 24 132-155 25-48 (210)
445 1m2o_B GTP-binding protein SAR 78.1 1.2 4.3E-05 40.4 3.1 22 134-155 24-45 (190)
446 4tmk_A Protein (thymidylate ki 78.0 1.8 6E-05 40.3 4.1 28 134-161 4-31 (213)
447 2obl_A ESCN; ATPase, hydrolase 78.0 1.3 4.3E-05 44.9 3.4 25 133-157 71-95 (347)
448 2www_A Methylmalonic aciduria 78.0 1.2 4.2E-05 45.2 3.3 27 132-158 73-99 (349)
449 3exa_A TRNA delta(2)-isopenten 77.9 1.3 4.4E-05 43.6 3.3 23 134-156 4-26 (322)
450 1fzq_A ADP-ribosylation factor 77.8 1.6 5.6E-05 39.2 3.8 24 132-155 15-38 (181)
451 1f6b_A SAR1; gtpases, N-termin 77.8 1.1 3.6E-05 41.3 2.6 23 133-155 25-47 (198)
452 2oil_A CATX-8, RAS-related pro 77.8 1.3 4.5E-05 40.3 3.2 24 133-156 25-48 (193)
453 1g16_A RAS-related protein SEC 77.7 1.3 4.5E-05 39.1 3.1 22 134-155 4-25 (170)
454 1svi_A GTP-binding protein YSX 77.7 1.3 4.5E-05 40.3 3.2 25 132-156 22-46 (195)
455 3rlf_A Maltose/maltodextrin im 77.7 1.3 4.4E-05 45.3 3.3 22 134-155 30-51 (381)
456 3pxg_A Negative regulator of g 77.6 2.2 7.6E-05 45.3 5.4 36 122-157 190-225 (468)
457 2lkc_A Translation initiation 77.6 1.5 5.1E-05 39.2 3.5 24 132-155 7-30 (178)
458 2qm8_A GTPase/ATPase; G protei 77.5 1.6 5.6E-05 43.9 4.1 28 131-158 53-80 (337)
459 3cwq_A Para family chromosome 77.5 1.8 6E-05 40.2 4.0 27 135-161 2-29 (209)
460 3oes_A GTPase rhebl1; small GT 77.5 1.3 4.5E-05 40.7 3.1 24 133-156 24-47 (201)
461 1upt_A ARL1, ADP-ribosylation 77.5 1.4 4.7E-05 39.0 3.2 22 134-155 8-29 (171)
462 3dz8_A RAS-related protein RAB 77.4 1.4 4.8E-05 40.1 3.3 23 134-156 24-46 (191)
463 3t5g_A GTP-binding protein RHE 77.3 1.4 4.6E-05 39.6 3.1 22 134-155 7-28 (181)
464 3uk6_A RUVB-like 2; hexameric 77.2 2.3 7.7E-05 43.6 5.2 36 123-158 58-95 (368)
465 1jr3_A DNA polymerase III subu 77.2 2.4 8.4E-05 43.3 5.5 37 122-158 26-63 (373)
466 3bwd_D RAC-like GTP-binding pr 77.2 1.4 4.8E-05 39.5 3.2 22 134-155 9-30 (182)
467 2qag_B Septin-6, protein NEDD5 77.1 1.2 4.2E-05 46.1 3.0 22 135-156 44-65 (427)
468 3jvv_A Twitching mobility prot 77.1 1.9 6.6E-05 43.7 4.5 32 127-158 117-148 (356)
469 4hlc_A DTMP kinase, thymidylat 77.1 1.6 5.4E-05 40.4 3.5 32 135-168 4-35 (205)
470 1nrj_B SR-beta, signal recogni 77.1 1.7 5.8E-05 40.5 3.8 25 132-156 11-35 (218)
471 1z6t_A APAF-1, apoptotic prote 77.0 2.9 9.9E-05 46.1 6.3 80 85-191 370-449 (591)
472 3sr0_A Adenylate kinase; phosp 77.0 1.7 5.9E-05 40.1 3.7 23 135-157 2-24 (206)
473 3d31_A Sulfate/molybdate ABC t 76.9 1.1 3.6E-05 45.4 2.4 22 134-155 27-48 (348)
474 2bov_A RAla, RAS-related prote 76.9 1.4 4.9E-05 40.5 3.2 24 133-156 14-37 (206)
475 1moz_A ARL1, ADP-ribosylation 76.9 1.4 4.7E-05 39.6 3.1 25 131-155 16-40 (183)
476 1vg8_A RAS-related protein RAB 76.9 1.4 4.9E-05 40.6 3.2 24 133-156 8-31 (207)
477 2a9k_A RAS-related protein RAL 76.9 1.5 5E-05 39.6 3.2 23 134-156 19-41 (187)
478 2p67_A LAO/AO transport system 76.8 1.4 4.8E-05 44.6 3.3 28 131-158 54-81 (341)
479 2ew1_A RAS-related protein RAB 76.8 1.4 4.8E-05 40.6 3.1 24 133-156 26-49 (201)
480 1mh1_A RAC1; GTP-binding, GTPa 76.8 1.5 5E-05 39.5 3.2 21 135-155 7-27 (186)
481 2bme_A RAB4A, RAS-related prot 76.8 1.4 4.9E-05 39.7 3.1 23 134-156 11-33 (186)
482 1ega_A Protein (GTP-binding pr 76.8 1.3 4.5E-05 43.9 3.1 23 133-155 8-30 (301)
483 2hxs_A RAB-26, RAS-related pro 76.8 1.3 4.4E-05 39.6 2.8 23 134-156 7-29 (178)
484 1sxj_A Activator 1 95 kDa subu 76.8 2.4 8.2E-05 45.7 5.4 25 133-157 77-101 (516)
485 3llu_A RAS-related GTP-binding 76.7 1.1 3.9E-05 41.0 2.4 23 133-155 20-42 (196)
486 3hdt_A Putative kinase; struct 76.7 1.9 6.6E-05 40.4 4.0 29 129-157 10-38 (223)
487 2efe_B Small GTP-binding prote 76.6 1.5 5.1E-05 39.3 3.2 23 134-156 13-35 (181)
488 1hqc_A RUVB; extended AAA-ATPa 76.6 1.1 3.8E-05 44.9 2.6 25 133-157 38-62 (324)
489 2fg5_A RAB-22B, RAS-related pr 76.6 1.4 4.9E-05 40.0 3.1 23 134-156 24-46 (192)
490 1gwn_A RHO-related GTP-binding 76.6 1.4 4.9E-05 40.6 3.1 24 133-156 28-51 (205)
491 3syl_A Protein CBBX; photosynt 76.6 1.5 5E-05 43.7 3.4 26 134-159 68-93 (309)
492 3lxx_A GTPase IMAP family memb 76.5 1.3 4.4E-05 42.2 2.9 25 132-156 28-52 (239)
493 3zvl_A Bifunctional polynucleo 76.5 1.1 3.9E-05 46.7 2.7 26 132-157 257-282 (416)
494 3bc1_A RAS-related protein RAB 76.5 1.5 5.1E-05 39.8 3.2 22 134-155 12-33 (195)
495 1p9r_A General secretion pathw 76.4 2.8 9.4E-05 43.6 5.5 35 123-157 157-191 (418)
496 3pqc_A Probable GTP-binding pr 76.4 1.2 4.2E-05 40.4 2.6 24 133-156 23-46 (195)
497 1tq4_A IIGP1, interferon-induc 76.4 1.7 5.8E-05 45.0 3.9 24 132-155 68-91 (413)
498 2g6b_A RAS-related protein RAB 76.4 1.5 5.3E-05 39.2 3.2 23 134-156 11-33 (180)
499 2iwr_A Centaurin gamma 1; ANK 76.3 1.2 4E-05 39.9 2.4 21 135-155 9-29 (178)
500 3reg_A RHO-like small GTPase; 76.3 1.5 5.3E-05 39.9 3.2 23 134-156 24-46 (194)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.5e-35 Score=331.73 Aligned_cols=507 Identities=17% Similarity=0.108 Sum_probs=339.6
Q ss_pred EEEeCCcccccCCccccCcceEEEeecCCCCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCc
Q 004197 198 FAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRM 274 (769)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 274 (769)
+...+.+++.+|. ..++++++|++++|.+..++. ..++++|+ +.+.++... .++ .+.|.++++|++|++++|
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~---~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIE---DKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EEC---TTTTTTCTTCCEEECTTC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccC---HHHhhchhhcCEeECCCC
Confidence 4555667777776 567899999999999988775 33899999 999887544 444 466789999999999999
Q ss_pred ccCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCc--ccchhhccCCCCcEEEccCCcCccccC
Q 004197 275 RLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIV--HLPKALGQLTKLRLLDLTDCFHLKVIA 351 (769)
Q Consensus 275 ~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~~ 351 (769)
.++.+ |..|+++++|++|++++|.++.++|..++++++|++|++++|.+. .+|..++++++|++|++++|. +..++
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~ 169 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTIT 169 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEEC
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecC
Confidence 99977 888999999999999999999986688999999999999999988 579999999999999999986 66666
Q ss_pred hhhhcCCCCcc----EEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCC--CCCcccc-cccccEEEEE
Q 004197 352 PDVISSLIRLE----ELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDI--ILPEGFF-ARKLERFKIS 424 (769)
Q Consensus 352 ~~~~~~L~~L~----~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~--~~~~~~~-~~~L~~l~i~ 424 (769)
...++.+++|+ +|++++|.+....+ ..+ ...+|+.|+++++... ..|..+. .+.++.+.+.
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~-----------~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQD-----------QAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECT-----------TTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred hhhhhhhhccccccceeeccCCCcceeCc-----------ccc-cCceeeeeeccCCccchhHHHHHhcccccccccccc
Confidence 55466666655 79998887763222 222 2236778887777543 1222222 4444444443
Q ss_pred EcCCcccccccccc-ccc----------------c-ccccccccCcccccceEEeeccccccccccccccccccEEEecc
Q 004197 425 IGNESFMASLPVAK-DWF----------------R-SRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDK 486 (769)
Q Consensus 425 ~~~~~~~~~l~~~~-~~~----------------~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~ 486 (769)
.........++... .+. . -....+....+++++.+++..+.....+ .+..+++|+.|++.+
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIR 316 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEES
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEccc
Confidence 33221111110000 000 0 0001111345677888888877755444 467778888888888
Q ss_pred cCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEE
Q 004197 487 LQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKV 566 (769)
Q Consensus 487 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 566 (769)
+.. ...+. . .+++|+.|++.++.....+ ....+++|+.|.++++. ++...........+++|+.|++
T Consensus 317 n~l-~~lp~---~-~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 317 CQL-KQFPT---L-DLPFLKSLTLTMNKGSISF-------KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp CCC-SSCCC---C-CCSSCCEEEEESCSSCEEC-------CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEEC
T ss_pred ccC-ccccc---C-CCCccceeeccCCcCccch-------hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeEC
Confidence 776 44442 3 7888888888888544332 44567888888888753 2322111112456788888888
Q ss_pred cCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccE
Q 004197 567 ENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTR 646 (769)
Q Consensus 567 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~ 646 (769)
++|. +..++ ..+..+++|+.|++++|......+.. .+..+++|+.|++++|+++.. .+..+..+++|+.
T Consensus 384 ~~n~-l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 384 SFNG-AIIMS--ANFMGLEELQHLDFQHSTLKRVTEFS---AFLSLEKLLYLDISYTNTKID-----FDGIFLGLTSLNT 452 (606)
T ss_dssp CSCS-EEEEC--CCCTTCTTCCEEECTTSEEESTTTTT---TTTTCTTCCEEECTTSCCEEC-----CTTTTTTCTTCCE
T ss_pred CCCc-cccch--hhccCCCCCCeeECCCCccCCccChh---hhhccccCCEEECcCCCCCcc-----chhhhcCCCCCCE
Confidence 8875 55554 25567788888888887543332211 234578888888888877664 3345667788888
Q ss_pred EEEecCCCcceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccc-cCCCccccC
Q 004197 647 LIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCL-YPGMHTLEW 725 (769)
Q Consensus 647 L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-~~~~~~l~~ 725 (769)
|++++|.--... .+..+.++++|++|++++| .++.+++. . ...+++|++|++++|+ ++.+ |..... +
T Consensus 453 L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~------~~~l~~L~~L~Ls~N~-l~~~~~~~~~~--l 520 (606)
T 3vq2_A 453 LKMAGNSFKDNT-LSNVFANTTNLTFLDLSKC-QLEQISWG-V------FDTLHRLQLLNMSHNN-LLFLDSSHYNQ--L 520 (606)
T ss_dssp EECTTCEEGGGE-ECSCCTTCTTCCEEECTTS-CCCEECTT-T------TTTCTTCCEEECCSSC-CSCEEGGGTTT--C
T ss_pred EECCCCcCCCcc-hHHhhccCCCCCEEECCCC-cCCccChh-h------hcccccCCEEECCCCc-CCCcCHHHccC--C
Confidence 888886433222 1345677788888888887 55554321 1 3345778888888864 4444 444443 3
Q ss_pred CCcceEEEecCCCceeeccCCCCcc-cccccCCCCC
Q 004197 726 PALKFLVVSGCDKLKIFGADLSQNN-EVDQLGIPAQ 760 (769)
Q Consensus 726 ~~L~~L~i~~C~~L~~l~~~~~~~~-~l~~l~i~~~ 760 (769)
++|++|++++|. ++.+|.....++ .|+.+++.++
T Consensus 521 ~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 521 YSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp TTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred CcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 788888888884 778887776665 4777777654
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.4e-33 Score=315.32 Aligned_cols=502 Identities=14% Similarity=0.130 Sum_probs=292.4
Q ss_pred EEEeCCcccccCCccccCcceEEEeecCCCCCCCC-c-cCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCc
Q 004197 198 FAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPE-V-LESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRM 274 (769)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~-~-~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 274 (769)
+...+..+..+|. ..++.+++|++++|.+..++. . .++++|+ |.+.++...... .+.|.++++|++|++++|
T Consensus 17 ~~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 17 YNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH----EDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC----TTTTTTCTTCCEEECTTC
T ss_pred EECCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeC----hhhccCccccCeeeCCCC
Confidence 4445566667775 567889999999999988753 3 3899999 999887654433 356789999999999999
Q ss_pred ccCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccc-hhhccCCCCcEEEccCCcCccccCh
Q 004197 275 RLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLP-KALGQLTKLRLLDLTDCFHLKVIAP 352 (769)
Q Consensus 275 ~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~ 352 (769)
.+..+ |..++++++|++|++++|.++.++|..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 170 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSK 170 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccCh
Confidence 99865 778999999999999999999886788999999999999999998763 344459999999999986 777766
Q ss_pred hhhcCCCCcc--EEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCC---------------------C--
Q 004197 353 DVISSLIRLE--ELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKND---------------------I-- 407 (769)
Q Consensus 353 ~~~~~L~~L~--~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~---------------------~-- 407 (769)
..++.+++|+ +|++++|.+....+ ......+|+.|++.++.. .
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEP------------GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECT------------TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred hhhhhhcccceeEEecCCCccCccCh------------hHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 6689999999 89999988764333 111223455555443320 0
Q ss_pred ---CCCcccc----cccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeecccccccccccccccccc
Q 004197 408 ---ILPEGFF----ARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVE 480 (769)
Q Consensus 408 ---~~~~~~~----~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~ 480 (769)
.++.... ..+++.+.+ .+. .+..++.. ....+++|+.|+++.+.....+..+..+++|+
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l--~~n-~l~~~~~~-----------~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~ 304 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINL--QKH-YFFNISSN-----------TFHCFSGLQELDLTATHLSELPSGLVGLSTLK 304 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEEC--TTC-CCSSCCTT-----------TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCC
T ss_pred cccccChhHhchhhcCceeEEEe--ecC-ccCccCHH-----------HhccccCCCEEeccCCccCCCChhhcccccCC
Confidence 0000000 002222221 111 11222210 02344556666666655544333355566666
Q ss_pred EEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCC
Q 004197 481 YLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNK 560 (769)
Q Consensus 481 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 560 (769)
+|++.++......+.. ++.+++|+.|++.++.....+. ......+++|+.|.++++. +............+++
T Consensus 305 ~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 305 KLVLSANKFENLCQIS--ASNFPSLTHLSIKGNTKRLELG----TGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSH 377 (606)
T ss_dssp EEECTTCCCSBGGGGC--GGGCTTCSEEECCSCSSCCBCC----SSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTT
T ss_pred EEECccCCcCcCchhh--hhccCcCCEEECCCCCcccccc----hhhhhccCcCCEEECCCCc-cccccCcchhcccCCC
Confidence 6666655443322221 3455666666666554221110 0123445666666666543 2222111112345666
Q ss_pred ccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCc
Q 004197 561 LKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPH 640 (769)
Q Consensus 561 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~ 640 (769)
|++|++++|. +...++ ..+..+++|++|++++|......+.. .+..+++|+.|++++|.++.+ .+..+..
T Consensus 378 L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~ 447 (606)
T 3t6q_A 378 LQSLNLSYNE-PLSLKT-EAFKECPQLELLDLAFTRLKVKDAQS---PFQNLHLLKVLNLSHSLLDIS-----SEQLFDG 447 (606)
T ss_dssp CCEEECCSCS-CEEECT-TTTTTCTTCSEEECTTCCEECCTTCC---TTTTCTTCCEEECTTCCCBTT-----CTTTTTT
T ss_pred CCEEECCCCc-CCcCCH-HHhcCCccCCeEECCCCcCCCcccch---hhhCcccCCEEECCCCccCCc-----CHHHHhC
Confidence 6666666653 333322 24455666666666665432221111 123456677777776665543 2334456
Q ss_pred CCCccEEEEecCCCcc-eecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCC
Q 004197 641 FQSLTRLIVWHCHKLK-YIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPG 719 (769)
Q Consensus 641 l~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~ 719 (769)
+++|+.|++++|.--. .++....+..+++|++|++++| .++.+++. . ...+++|++|+++++.-....+..
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~------~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQH-A------FTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTT-T------TTTCTTCCEEECCSSCCCGGGGGG
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChh-h------hccccCCCEEECCCCccCcCChhH
Confidence 6677777777654222 1222234566677777777766 45443221 1 234566777777765332333333
Q ss_pred CccccCCCcceEEEecCCCceeecc-CCCCcccccccCCCCC
Q 004197 720 MHTLEWPALKFLVVSGCDKLKIFGA-DLSQNNEVDQLGIPAQ 760 (769)
Q Consensus 720 ~~~l~~~~L~~L~i~~C~~L~~l~~-~~~~~~~l~~l~i~~~ 760 (769)
... +++| .|++++|. ++.++. ....++.|+.+++.++
T Consensus 520 l~~--l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 520 LSH--LKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp GTT--CCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTC
T ss_pred hCc--cccc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCC
Confidence 332 3666 67777763 334333 3355566666666554
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-33 Score=324.03 Aligned_cols=454 Identities=18% Similarity=0.052 Sum_probs=230.3
Q ss_pred hcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcc-cchhhccCCCCcEE
Q 004197 261 KRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH-LPKALGQLTKLRLL 339 (769)
Q Consensus 261 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L 339 (769)
..+++|++|++++|.+...++.++++++|++|++++|.++...|..++++++|++|++++|.+.. +|. . .+++|++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~L 274 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-L-PLKSLQYL 274 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C-CCTTCCEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc-c-ccCCCCEE
Confidence 44555555555555555332235555555555555555542225555555555555555554442 221 1 44444444
Q ss_pred EccCCcCccccChhhhcC-CCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCC-CCCcc-cc-c
Q 004197 340 DLTDCFHLKVIAPDVISS-LIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDI-ILPEG-FF-A 415 (769)
Q Consensus 340 ~l~~~~~l~~~~~~~~~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~-~~-~ 415 (769)
++++|.....+|.. ++. +++|++|++++|.+....+ ..++.+++|+.|+++.|... .+|.. +. .
T Consensus 275 ~L~~n~l~~~ip~~-~~~~~~~L~~L~Ls~n~l~~~~p-----------~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 275 SLAENKFTGEIPDF-LSGACDTLTGLDLSGNHFYGAVP-----------PFFGSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp ECCSSEEEESCCCC-SCTTCTTCSEEECCSSEEEECCC-----------GGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred ECcCCccCCccCHH-HHhhcCcCCEEECcCCcCCCccc-----------hHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 44444322233433 222 2445555554444432222 33444444444444444322 23322 11 3
Q ss_pred ccccEEEEEEcCCcccccccccccccc-cc------------cccccc--CcccccceEEeecccccccccc-ccccccc
Q 004197 416 RKLERFKISIGNESFMASLPVAKDWFR-SR------------SHFLIN--NNRESLRELKLKLDFTDVRSMK-LQAINKV 479 (769)
Q Consensus 416 ~~L~~l~i~~~~~~~~~~l~~~~~~~~-~~------------~~~~~~--~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L 479 (769)
++|+.|.+... ...+.+|....... .. ...... ..+++|+.|++..+........ +..+++|
T Consensus 343 ~~L~~L~Ls~n--~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 343 RGLKVLDLSFN--EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420 (768)
T ss_dssp TTCCEEECCSS--EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred CCCCEEeCcCC--ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCC
Confidence 33333332111 00011110000000 00 000001 1145667777766665433333 6667777
Q ss_pred cEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccC
Q 004197 480 EYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFN 559 (769)
Q Consensus 480 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 559 (769)
+.|++.++......+.. ++.+++|+.|++.++.....+ ......+++|+.|.+.++.-...++. ....++
T Consensus 421 ~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~ 490 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGEI-----PQELMYVKTLETLILDFNDLTGEIPS---GLSNCT 490 (768)
T ss_dssp CEEECCSSEEESCCCGG--GGGCTTCCEEECCSSCCCSCC-----CGGGGGCTTCCEEECCSSCCCSCCCG---GGGGCT
T ss_pred CEEECcCCcccCcccHH--HhcCCCCCEEECCCCcccCcC-----CHHHcCCCCceEEEecCCcccCcCCH---HHhcCC
Confidence 77777766544333333 455677777777776532111 12344567777777777643323332 245677
Q ss_pred CccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCccccccccccccee-ccCC-------
Q 004197 560 KLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDK-IWHY------- 631 (769)
Q Consensus 560 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-i~~~------- 631 (769)
+|+.|++++|.....+|. .+..+++|+.|++++|.....++. .+..+++|+.|+|++|.++. ++..
T Consensus 491 ~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNIPA----ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp TCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEECCG----GGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred CCCEEEccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcCCH----HHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 788888877754434432 556777888888887765444442 34457778888888876542 1110
Q ss_pred ---------------------------------------------------------CCCCCccCcCCCccEEEEecCCC
Q 004197 632 ---------------------------------------------------------NHLPIMLPHFQSLTRLIVWHCHK 654 (769)
Q Consensus 632 ---------------------------------------------------------~~~~~~l~~l~~L~~L~l~~c~~ 654 (769)
+..+..+..+++|+.|++++|.-
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 00112344567777777777643
Q ss_pred cceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCCCccccCCCcceEEEe
Q 004197 655 LKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVS 734 (769)
Q Consensus 655 l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~ 734 (769)
-..+ +..++++++|+.|++++| .++..++. ....+++|++|+++++.--..+|.....+ ++|++|+++
T Consensus 645 ~g~i--p~~l~~l~~L~~L~Ls~N-~l~g~ip~-------~l~~L~~L~~LdLs~N~l~g~ip~~l~~l--~~L~~L~ls 712 (768)
T 3rgz_A 645 SGYI--PKEIGSMPYLFILNLGHN-DISGSIPD-------EVGDLRGLNILDLSSNKLDGRIPQAMSAL--TMLTEIDLS 712 (768)
T ss_dssp BSCC--CGGGGGCTTCCEEECCSS-CCCSCCCG-------GGGGCTTCCEEECCSSCCEECCCGGGGGC--CCCSEEECC
T ss_pred cccC--CHHHhccccCCEEeCcCC-ccCCCCCh-------HHhCCCCCCEEECCCCcccCcCChHHhCC--CCCCEEECc
Confidence 3333 345677778888888777 34322211 14456678888888765555666665554 778888888
Q ss_pred cCCCceeeccCCCCcccccccCCCC
Q 004197 735 GCDKLKIFGADLSQNNEVDQLGIPA 759 (769)
Q Consensus 735 ~C~~L~~l~~~~~~~~~l~~l~i~~ 759 (769)
+|+--..+|.. .....+....+.+
T Consensus 713 ~N~l~g~iP~~-~~~~~~~~~~~~g 736 (768)
T 3rgz_A 713 NNNLSGPIPEM-GQFETFPPAKFLN 736 (768)
T ss_dssp SSEEEEECCSS-SSGGGSCGGGGCS
T ss_pred CCcccccCCCc-hhhccCCHHHhcC
Confidence 87654555553 2334444444443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.1e-32 Score=310.06 Aligned_cols=513 Identities=15% Similarity=0.128 Sum_probs=326.6
Q ss_pred EEEeCCcccccCCccccCcceEEEeecCCCCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCc
Q 004197 198 FAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRM 274 (769)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 274 (769)
+...+..+..+|. ..++++++|++++|.+..++. ..++++|+ +.+.++.... ++ .+.|.++++|++|++++|
T Consensus 9 ~~cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~---~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 9 ADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LE---PELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp EECCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CC---TTHHHHCTTCCEEECCSS
T ss_pred eECCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cC---HHHHhcccCcCEEECCCC
Confidence 4455566777775 467899999999999988875 34899999 9998776443 43 467889999999999999
Q ss_pred ccCCCCc-cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCccc-chhhccCCCCcEEEccCCcCccccCh
Q 004197 275 RLLSLPS-SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHL-PKALGQLTKLRLLDLTDCFHLKVIAP 352 (769)
Q Consensus 275 ~i~~lp~-~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~ 352 (769)
.++.+|. .|+++++|++|++++|.++.++|..++++++|++|++++|.+... |..++++++|++|++++|. ++.++.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKS 162 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCH
Confidence 9999886 599999999999999999999668899999999999999988865 4568899999999999986 666766
Q ss_pred hhhc--CCCCccEEEccCCccccceeccccccccCCchhhcC---------------------------CCCccEEEEEe
Q 004197 353 DVIS--SLIRLEELYMGNCSIEWEVERVNSERSNASLDELML---------------------------LPWLTTIEINI 403 (769)
Q Consensus 353 ~~~~--~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~---------------------------l~~L~~L~l~~ 403 (769)
..++ .+++|++|++++|.+....+ ..+.. .++|+.|++++
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSP-----------GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCT-----------TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred HHhhccccccccEEECCCCcccccCh-----------hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence 5444 56899999999987764333 12222 25566666666
Q ss_pred eCCCCCCc-ccc-c--ccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeecccccccccc-cccccc
Q 004197 404 KNDIILPE-GFF-A--RKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMK-LQAINK 478 (769)
Q Consensus 404 ~~~~~~~~-~~~-~--~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~ 478 (769)
+.....++ ++. . ++|+.|.+.... +..++.. + ...+++|+.++++.+........ +..+++
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~---l~~~~~~--~---------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNN---LNVVGND--S---------FAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSC---CCEECTT--T---------TTTCTTCCEEECCSCCBSEECTTTTTTCTT
T ss_pred CcccccChhHhhccCcCCCCEEECCCCC---cCccCcc--c---------ccCcccccEeeCCCCccCccChhhhcCCCC
Confidence 65444332 222 2 236665543221 1222210 0 33456677777776665554444 666677
Q ss_pred ccEEEecccCCcc-----ccc--ccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccc-ccccccc
Q 004197 479 VEYLWLDKLQGVK-----NVL--FDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLI-NMQRICI 550 (769)
Q Consensus 479 L~~L~l~~~~~~~-----~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~-~l~~~~~ 550 (769)
|+.|++.++.... ..+ ....++.+++|+.|+++++.- ..+ .......+++|++|.++++. .+..++.
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l-~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI-PGI----KSNMFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB-CCC----CTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc-CCC----ChhHhccccCCcEEECCCCchhhhhcch
Confidence 7777776532211 011 011244566677777666531 111 00123345566666665432 1111111
Q ss_pred cc------------------------ccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCC
Q 004197 551 DR------------------------LKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGG 606 (769)
Q Consensus 551 ~~------------------------~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 606 (769)
.. .....+++|+.|++++|.....+++ ..+..+++|++|++++|... .+..
T Consensus 373 ~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~-~~~~--- 447 (680)
T 1ziw_A 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNKYL-QLTR--- 447 (680)
T ss_dssp TTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCSCSEE-ECCT---
T ss_pred hhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc-ccccCcccccEEecCCCCcc-eeCh---
Confidence 00 0123445566666655543222222 23455566666666665421 1111
Q ss_pred cccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeec
Q 004197 607 EADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIIS 686 (769)
Q Consensus 607 ~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~ 686 (769)
..+..+|+|+.|++++|.++.+ ...+..+..+++|+.|++++| .++.++ +..+.++++|++|++++| .++.+..
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~~---~~~p~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~~~~ 521 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKNV---DSSPSPFQPLRNLTILDLSNN-NIANIN-DDMLEGLEKLEILDLQHN-NLARLWK 521 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBCT---TCSSCTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCGGGGS
T ss_pred hhhhcCcccccchhcccccccc---ccCCcccccCCCCCEEECCCC-CCCcCC-hhhhccccccCEEeCCCC-Cccccch
Confidence 1233456677777776655432 113345678889999999886 466663 455778899999999988 5655422
Q ss_pred cccccCC--cCeeeecccCccccccCcccccccCCCccccCCCcceEEEecCCCceeeccCC-CCcccccccCCCCCC
Q 004197 687 EDRVDHV--TPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCDKLKIFGADL-SQNNEVDQLGIPAQR 761 (769)
Q Consensus 687 ~~~~~~~--~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~l~~~~-~~~~~l~~l~i~~~~ 761 (769)
. ..+.. .....+++|++|+++++ .++.+|.+... .+++|++|+++++ +|+.+|... ..++.|+.+++.+++
T Consensus 522 ~-~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~-~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 522 H-ANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFK-DLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp T-TSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred h-hccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcc-cccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCc
Confidence 1 11110 11345788999999985 67888875432 4599999999887 688888774 678999999988764
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.5e-32 Score=310.41 Aligned_cols=488 Identities=16% Similarity=0.130 Sum_probs=348.4
Q ss_pred eEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEEec
Q 004197 218 FAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLD 295 (769)
Q Consensus 218 r~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 295 (769)
++++.+++.+..+|... .++++ +.+.++... .++ ...|.++++|++|++++|.++.+ |..|+++++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~-~~~---~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLK-ILK---SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTSCCC-EEC---TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEccCCCcccCCCCC-CCCcCEEECCCCCcC-EeC---hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 57888888888888644 37899 888877643 444 55688999999999999999976 6679999999999999
Q ss_pred cccccccChhhhhccCCCcEEEeecCCCcccc-hhhccCCCCcEEEccCCcCcc--ccChhhhcCCCCccEEEccCCccc
Q 004197 296 QSILGDIDIAIIGKLGNLEILSFWRSDIVHLP-KALGQLTKLRLLDLTDCFHLK--VIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 296 ~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~--~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
+|.++.++|..|+++++|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCcce
Confidence 99999887899999999999999999999877 679999999999999987 54 46776 999999999999999877
Q ss_pred cceeccccccccCCchhhcCCCC-ccEEEEEeeCCCCCCcccc-cccccEEEEEEcCCcccccccc-------------c
Q 004197 373 WEVERVNSERSNASLDELMLLPW-LTTIEINIKNDIILPEGFF-ARKLERFKISIGNESFMASLPV-------------A 437 (769)
Q Consensus 373 ~~~~~~~~~~~~~~l~~l~~l~~-L~~L~l~~~~~~~~~~~~~-~~~L~~l~i~~~~~~~~~~l~~-------------~ 437 (769)
...+ ..+..+..++. +..|+++.+....++.... ..+|+.+.+....... ...|. .
T Consensus 167 ~~~~--------~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 167 TITV--------NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSS-NIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp EECT--------TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCH-HHHHHHHHTTTTCEEEEEE
T ss_pred ecCh--------hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccch-hHHHHHhcccccccccccc
Confidence 4332 23344455544 5689999998888777655 4578888765432210 01110 0
Q ss_pred ccccccccccc-----ccCccc--ccceEEe-eccccccccccccccccccEEEecccCCcccccccCCCCCCCCCceEE
Q 004197 438 KDWFRSRSHFL-----INNNRE--SLRELKL-KLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLW 509 (769)
Q Consensus 438 ~~~~~~~~~~~-----~~~~~~--~L~~l~l-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 509 (769)
+........+. ....+. .++.+.+ ..+........+..+++|+.|.+.++... ..+ .+..+++|+.|+
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~---~l~~~~~L~~L~ 313 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE---DVPKHFKWQSLS 313 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC---CCCTTCCCSEEE
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh---hccccccCCEEE
Confidence 00000000000 000111 1222333 11111111122677889999999887753 333 366789999999
Q ss_pred EecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCcccc-chHHhhcCCCCc
Q 004197 510 VQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIF-WLSTAKCLPRLE 588 (769)
Q Consensus 510 l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~l~~L~ 588 (769)
+.+|.. ..+ ... .+++|+.|.+.++.....+ ....+++|+.|++++|. +.... ....+..+++|+
T Consensus 314 l~~n~l-~~l------p~~-~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 314 IIRCQL-KQF------PTL-DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp EESCCC-SSC------CCC-CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCC
T ss_pred cccccC-ccc------ccC-CCCccceeeccCCcCccch-----hhccCCCCCEEECcCCc-cCCCcchhhhhccCCccc
Confidence 999864 333 123 7899999999988655544 25578999999999984 44442 113678899999
Q ss_pred EEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcc
Q 004197 589 RVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFE 668 (769)
Q Consensus 589 ~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 668 (769)
+|++++|. +..++ ..+..+++|+.|++++|+++.+.. ...+..+++|+.|++++|. ++... +..+.+++
T Consensus 380 ~L~L~~n~-l~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~ 448 (606)
T 3vq2_A 380 HLDLSFNG-AIIMS----ANFMGLEELQHLDFQHSTLKRVTE----FSAFLSLEKLLYLDISYTN-TKIDF-DGIFLGLT 448 (606)
T ss_dssp EEECCSCS-EEEEC----CCCTTCTTCCEEECTTSEEESTTT----TTTTTTCTTCCEEECTTSC-CEECC-TTTTTTCT
T ss_pred EeECCCCc-cccch----hhccCCCCCCeeECCCCccCCccC----hhhhhccccCCEEECcCCC-CCccc-hhhhcCCC
Confidence 99999986 33333 145578999999999998887521 1356789999999999986 44442 45678999
Q ss_pred cCcEEeEccccccce-eeccccccCCcCeeeecccCccccccCccccccc-CCCccccCCCcceEEEecCCCceeeccCC
Q 004197 669 QLQQLDIVNCRGLQE-IISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLY-PGMHTLEWPALKFLVVSGCDKLKIFGADL 746 (769)
Q Consensus 669 ~L~~L~l~~c~~l~~-i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~-~~~~~l~~~~L~~L~i~~C~~L~~l~~~~ 746 (769)
+|++|++++|. +.. +++ .. ...+++|++|++++| .++.++ ..... +++|++|++++|.--...|..+
T Consensus 449 ~L~~L~l~~n~-l~~~~~~-~~------~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 449 SLNTLKMAGNS-FKDNTLS-NV------FANTTNLTFLDLSKC-QLEQISWGVFDT--LHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp TCCEEECTTCE-EGGGEEC-SC------CTTCTTCCEEECTTS-CCCEECTTTTTT--CTTCCEEECCSSCCSCEEGGGT
T ss_pred CCCEEECCCCc-CCCcchH-Hh------hccCCCCCEEECCCC-cCCccChhhhcc--cccCCEEECCCCcCCCcCHHHc
Confidence 99999999994 433 221 11 345688999999998 455554 44443 4999999999996555558888
Q ss_pred CCcccccccCCCCCC
Q 004197 747 SQNNEVDQLGIPAQR 761 (769)
Q Consensus 747 ~~~~~l~~l~i~~~~ 761 (769)
..++.|+.+++.+++
T Consensus 518 ~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNR 532 (606)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred cCCCcCCEEECCCCc
Confidence 999999999998775
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-32 Score=316.62 Aligned_cols=478 Identities=17% Similarity=0.076 Sum_probs=313.8
Q ss_pred cceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccC-CCCccccccCCccEEE
Q 004197 216 KYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLL-SLPSSIDLLVNLRTLC 293 (769)
Q Consensus 216 ~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~ 293 (769)
++++|++++|.+........+++|+ +.+.++.....+| . +.++++|++|++++|.++ .+|..++.+++|++|+
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP---F--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCC---B--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCc---c--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 3444444444433222224566777 7777666555555 2 567788888888888776 4577777788888888
Q ss_pred eccccccccChhhhhccCCCcEEEeecCCCc-ccchhhccC-CCCcEEEccCCcCccccChhhhcCCCCccEEEccCCcc
Q 004197 294 LDQSILGDIDIAIIGKLGNLEILSFWRSDIV-HLPKALGQL-TKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSI 371 (769)
Q Consensus 294 L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~ 371 (769)
+++|.+....|.. .+++|++|++++|.+. .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++++|.+
T Consensus 254 Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 254 ISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNF 330 (768)
T ss_dssp CCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEE
T ss_pred CCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcc
Confidence 8877765331332 6777777777777666 666666654 77777777776533344554 67777777777777766
Q ss_pred ccceeccccccccCCchhhcCCCCccEEEEEeeCCC-CCCcccc-cc-cccEEEEEEcCCcccccccccccc--ccc---
Q 004197 372 EWEVERVNSERSNASLDELMLLPWLTTIEINIKNDI-ILPEGFF-AR-KLERFKISIGNESFMASLPVAKDW--FRS--- 443 (769)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-~~~~~~~-~~-~L~~l~i~~~~~~~~~~l~~~~~~--~~~--- 443 (769)
.+.++. ..+..+++|+.|+++.|... .+|..+. .. +|+.|.+.... ..+.+|..... ...
T Consensus 331 ~~~ip~----------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~--l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 331 SGELPM----------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN--FSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp EEECCH----------HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE--EEEECCTTTTCSTTCCCCE
T ss_pred cCcCCH----------HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC--cCCCcChhhhhcccCCccE
Confidence 544431 23666677777777666543 4444443 22 55555432111 11111100000 000
Q ss_pred --------cccc-cccCcccccceEEeecccccccccc-ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecC
Q 004197 444 --------RSHF-LINNNRESLRELKLKLDFTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNN 513 (769)
Q Consensus 444 --------~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 513 (769)
...+ .....+++|+.|+++.+........ +..+++|+.|++.++......+.. ++.+++|+.|++.++
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE--LMYVKTLETLILDFN 476 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSS
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH--HcCCCCceEEEecCC
Confidence 0000 1245678999999999887655444 899999999999998876555544 567899999999998
Q ss_pred CCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEc
Q 004197 514 PDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVI 593 (769)
Q Consensus 514 ~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~ 593 (769)
.....+ ......+++|+.|.+.++.-...++. ..+.+++|+.|++++|.....+|. .+..+++|+.|+++
T Consensus 477 ~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 477 DLTGEI-----PSGLSNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLN 546 (768)
T ss_dssp CCCSCC-----CGGGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECC
T ss_pred cccCcC-----CHHHhcCCCCCEEEccCCccCCcCCh---HHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECC
Confidence 643221 12456789999999999864444443 256789999999999965545543 67899999999999
Q ss_pred cCchhhhhhhcCC------------------------------------------------------------------c
Q 004197 594 NCSKMKEIFAIGG------------------------------------------------------------------E 607 (769)
Q Consensus 594 ~c~~l~~~~~~~~------------------------------------------------------------------~ 607 (769)
+|+....+|.... .
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 9875544332110 0
Q ss_pred ccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeecc
Q 004197 608 ADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISE 687 (769)
Q Consensus 608 ~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~ 687 (769)
.+..+++|+.|+|++|+++.. .|..+..+++|+.|++++|.--..+ +..+.++++|+.|++++| +++..++.
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~-----ip~~l~~l~~L~~L~Ls~N~l~g~i--p~~l~~L~~L~~LdLs~N-~l~g~ip~ 698 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGY-----IPKEIGSMPYLFILNLGHNDISGSI--PDEVGDLRGLNILDLSSN-KLDGRIPQ 698 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSC-----CCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSS-CCEECCCG
T ss_pred hhhccccccEEECcCCccccc-----CCHHHhccccCCEEeCcCCccCCCC--ChHHhCCCCCCEEECCCC-cccCcCCh
Confidence 123357899999999988754 5567889999999999997544454 467899999999999998 55543221
Q ss_pred ccccCCcCeeeecccCccccccCcccccccCCCccccCCCcceEEEecCCCceeec
Q 004197 688 DRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCDKLKIFG 743 (769)
Q Consensus 688 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~l~ 743 (769)
....+++|++|++++++--..+|.+.. +.++....+.|+|.|--.|
T Consensus 699 -------~l~~l~~L~~L~ls~N~l~g~iP~~~~---~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 699 -------AMSALTMLTEIDLSNNNLSGPIPEMGQ---FETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp -------GGGGCCCCSEEECCSSEEEEECCSSSS---GGGSCGGGGCSCTEEESTT
T ss_pred -------HHhCCCCCCEEECcCCcccccCCCchh---hccCCHHHhcCCchhcCCC
Confidence 145678899999999877778887532 2566666777888775444
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-31 Score=305.44 Aligned_cols=496 Identities=16% Similarity=0.139 Sum_probs=348.4
Q ss_pred eEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEEec
Q 004197 218 FAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLD 295 (769)
Q Consensus 218 r~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 295 (769)
++++..+..+..+|... .+.++ +.+.++... .++ ...|.++++|++|++++|.+..+ |..|+++++|++|+++
T Consensus 15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~-~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNVLP-TIQ---NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTCCCS-EEC---TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEECCCCCcccCcCCC-CCcCcEEEccCCccC-cCC---hhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 46777777778888543 23688 888877654 444 45678999999999999999865 7889999999999999
Q ss_pred cccccccChhhhhccCCCcEEEeecCCCccc-chhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccc
Q 004197 296 QSILGDIDIAIIGKLGNLEILSFWRSDIVHL-PKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWE 374 (769)
Q Consensus 296 ~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~ 374 (769)
+|.++.+.|..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+...
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccccc
Confidence 9999888788999999999999999999987 5779999999999999987 6665322255699999999999988744
Q ss_pred eeccccccccCCchhhcCCCCcc--EEEEEeeCCCCCCcccc-cccccEEEEEEcCC-----cccccccccccccc----
Q 004197 375 VERVNSERSNASLDELMLLPWLT--TIEINIKNDIILPEGFF-ARKLERFKISIGNE-----SFMASLPVAKDWFR---- 442 (769)
Q Consensus 375 ~~~~~~~~~~~~l~~l~~l~~L~--~L~l~~~~~~~~~~~~~-~~~L~~l~i~~~~~-----~~~~~l~~~~~~~~---- 442 (769)
.+ ..++.+++|+ .|+++++....+++... ...|+.+.+..... ..+..+....-|.+
T Consensus 169 ~~-----------~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 169 SK-----------EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp CH-----------HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTT
T ss_pred Ch-----------hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcc
Confidence 33 6788888888 78888888766655443 45555554321110 00000000000000
Q ss_pred ------ccccccccCcccccceEEeecccccccccc-ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCC
Q 004197 443 ------SRSHFLINNNRESLRELKLKLDFTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPD 515 (769)
Q Consensus 443 ------~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 515 (769)
....+... ...+++.++++.+........ +..+++|+.|++.++... ..+.. ++.+++|++|++.++.-
T Consensus 238 ~~~~~i~~~~~~~l-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~--l~~l~~L~~L~l~~n~l 313 (606)
T 3t6q_A 238 MDDEDISPAVFEGL-CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG--LVGLSTLKKLVLSANKF 313 (606)
T ss_dssp SCCCCCCGGGGGGG-GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS--CCSCTTCCEEECTTCCC
T ss_pred ccccccChhHhchh-hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChh--hcccccCCEEECccCCc
Confidence 00001101 112688888888887777666 788999999999988644 44433 57789999999998853
Q ss_pred cceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccc-hHHhhcCCCCcEEEEcc
Q 004197 516 FFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFW-LSTAKCLPRLERVAVIN 594 (769)
Q Consensus 516 l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~i~~ 594 (769)
. .+ .......+++|+.|.+.++.....++.. ....+++|+.|++++|. +..... ...+..+++|++|++++
T Consensus 314 ~-~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 314 E-NL----CQISASNFPSLTHLSIKGNTKRLELGTG--CLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp S-BG----GGGCGGGCTTCSEEECCSCSSCCBCCSS--TTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCS
T ss_pred C-cC----chhhhhccCcCCEEECCCCCcccccchh--hhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCC
Confidence 2 11 1124567899999999987544344332 14578999999999985 444321 12567899999999999
Q ss_pred CchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEe
Q 004197 595 CSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLD 674 (769)
Q Consensus 595 c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~ 674 (769)
|......+. .+..+++|+.|++++|.++... .+..+..+++|+.|++++|. ++.. ++..+.++++|++|+
T Consensus 386 n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 386 NEPLSLKTE----AFKECPQLELLDLAFTRLKVKD----AQSPFQNLHLLKVLNLSHSL-LDIS-SEQLFDGLPALQHLN 455 (606)
T ss_dssp CSCEEECTT----TTTTCTTCSEEECTTCCEECCT----TCCTTTTCTTCCEEECTTCC-CBTT-CTTTTTTCTTCCEEE
T ss_pred CcCCcCCHH----HhcCCccCCeEECCCCcCCCcc----cchhhhCcccCCEEECCCCc-cCCc-CHHHHhCCCCCCEEE
Confidence 864322221 3446899999999999877541 12236789999999999975 4444 245678899999999
Q ss_pred EccccccceeeccccccCCcCeeeecccCccccccCccccccc-CCCccccCCCcceEEEecCCCceeeccCCCCccccc
Q 004197 675 IVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLY-PGMHTLEWPALKFLVVSGCDKLKIFGADLSQNNEVD 753 (769)
Q Consensus 675 l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~-~~~~~l~~~~L~~L~i~~C~~L~~l~~~~~~~~~l~ 753 (769)
+++|+ +.... .+.......+++|++|++++| .++.++ ..... +++|++|++++|.--...|.....++.|
T Consensus 456 L~~n~-l~~~~----~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 456 LQGNH-FPKGN----IQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTS--LKMMNHVDLSHNRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp CTTCB-CGGGE----ECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTT--CTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred CCCCC-CCccc----cccchhhccCCCccEEECCCC-ccCccChhhhcc--ccCCCEEECCCCccCcCChhHhCccccc-
Confidence 99994 43311 111112456788999999997 455554 44443 4999999999996545556677788888
Q ss_pred ccCCCCCC
Q 004197 754 QLGIPAQR 761 (769)
Q Consensus 754 ~l~i~~~~ 761 (769)
.+++.+++
T Consensus 527 ~L~L~~N~ 534 (606)
T 3t6q_A 527 YLNLASNH 534 (606)
T ss_dssp EEECCSSC
T ss_pred EEECcCCc
Confidence 88776663
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-31 Score=299.62 Aligned_cols=492 Identities=15% Similarity=0.144 Sum_probs=297.0
Q ss_pred EEEeCCcccccCCccccCcceEEEeecCCCCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCc
Q 004197 198 FAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRM 274 (769)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 274 (769)
+...+.++..+|. ..++++++|++++|.+..++. ...+++|+ +.+.++. ...++ .+.|.++++|++|++++|
T Consensus 12 ~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~---~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 12 YQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIE---DGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp EECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEEC---TTTTTTCTTCCEEECTTC
T ss_pred EEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccC---cccccCchhCCEEeCcCC
Confidence 4445566777775 567889999999999987763 34899999 9998875 34555 567889999999999999
Q ss_pred ccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcc--cchhhccCCCCcEEEccCCcCccccC
Q 004197 275 RLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH--LPKALGQLTKLRLLDLTDCFHLKVIA 351 (769)
Q Consensus 275 ~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~~ 351 (769)
.++.+| ..|+.+++|++|++++|.++.+++..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~ 165 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIY 165 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEEC
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceec
Confidence 998775 689999999999999999999844479999999999999998885 78999999999999999986 67776
Q ss_pred hhhhcCCCCc----cEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCC--CCcccc-cccccEEEEE
Q 004197 352 PDVISSLIRL----EELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDII--LPEGFF-ARKLERFKIS 424 (769)
Q Consensus 352 ~~~~~~L~~L----~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~--~~~~~~-~~~L~~l~i~ 424 (769)
...++.+++| ++|++++|.+....+ ..+..+ +|+.|++..+.... ++..+. .++++...+.
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-----------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQP-----------GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECT-----------TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred HHHccchhccchhhhhcccCCCCceecCH-----------HHhccC-cceeEecccccccccchhhhhcCccccceeeec
Confidence 6558888888 899999988764333 333333 68888888764221 111111 3344443333
Q ss_pred EcCCcc---ccccccccccccccccccccCcccc--cceEEeecc-cccccccc-ccccccccEEEecccCCcccccccC
Q 004197 425 IGNESF---MASLPVAKDWFRSRSHFLINNNRES--LRELKLKLD-FTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDL 497 (769)
Q Consensus 425 ~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~--L~~l~l~~~-~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~ 497 (769)
...... +..++.. . ...+.+ ++.+.+..+ ........ +..+++|+.|++.++... ..+..
T Consensus 234 ~~~~~~~~~l~~~~~~--------~---~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~- 300 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKS--------A---LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF- 300 (570)
T ss_dssp EEECCCCSSCEECCTT--------T---TGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC-
T ss_pred cccccCchhhhhcchh--------h---hccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh-
Confidence 222111 1111100 0 111111 223333322 11111122 566667777777665432 22222
Q ss_pred CCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccc
Q 004197 498 DTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFW 577 (769)
Q Consensus 498 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 577 (769)
...+ +|+.|++.++... . .+...+++|+.|.+.++......+ ...+++|+.|++++|. +.....
T Consensus 301 -~~~~-~L~~L~l~~n~~~-~-------l~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~L~~L~l~~n~-l~~~~~ 364 (570)
T 2z63_A 301 -SYNF-GWQHLELVNCKFG-Q-------FPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNG-LSFKGC 364 (570)
T ss_dssp -CSCC-CCSEEEEESCBCS-S-------CCBCBCSSCCEEEEESCBSCCBCC-----CCBCTTCCEEECCSSC-CBEEEE
T ss_pred -hccC-CccEEeeccCccc-c-------cCcccccccCEEeCcCCccccccc-----cccCCCCCEEeCcCCc-cCcccc
Confidence 2334 6777777666421 1 122456667777766654322221 2456677777776663 332210
Q ss_pred -hHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcc
Q 004197 578 -LSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLK 656 (769)
Q Consensus 578 -~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 656 (769)
...+..+++|++|++++|... .++. .+..+++|+.|++++|.++.+.. ...+..+++|+.|++++|. +.
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~-~~~~----~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~-l~ 434 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVI-TMSS----NFLGLEQLEHLDFQHSNLKQMSE----FSVFLSLRNLIYLDISHTH-TR 434 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEE-EEEE----EEETCTTCCEEECTTSEEESCTT----SCTTTTCTTCCEEECTTSC-CE
T ss_pred ccccccccCccCEEECCCCccc-cccc----cccccCCCCEEEccCCccccccc----hhhhhcCCCCCEEeCcCCc-cc
Confidence 124456677777777766422 2221 13356677777777766554311 1234566677777776664 33
Q ss_pred eecchhhHhhcccCcEEeEccccccc--eeeccccccCCcCeeeecccCccccccCcccccc-cCCCccccCCCcceEEE
Q 004197 657 YIFLASMIRSFEQLQQLDIVNCRGLQ--EIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCL-YPGMHTLEWPALKFLVV 733 (769)
Q Consensus 657 ~l~~~~~~~~l~~L~~L~l~~c~~l~--~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l-~~~~~~l~~~~L~~L~i 733 (769)
..+ +..+.++++|++|++++|. +. .++ . ....+++|++|++++|. ++.+ |..... +++|++|++
T Consensus 435 ~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~p--~------~~~~l~~L~~L~l~~n~-l~~~~~~~~~~--l~~L~~L~l 501 (570)
T 2z63_A 435 VAF-NGIFNGLSSLEVLKMAGNS-FQENFLP--D------IFTELRNLTFLDLSQCQ-LEQLSPTAFNS--LSSLQVLNM 501 (570)
T ss_dssp ECC-TTTTTTCTTCCEEECTTCE-EGGGEEC--S------CCTTCTTCCEEECTTSC-CCEECTTTTTT--CTTCCEEEC
T ss_pred ccc-hhhhhcCCcCcEEECcCCc-Cccccch--h------hhhcccCCCEEECCCCc-cccCChhhhhc--ccCCCEEeC
Confidence 332 3445666777777777663 22 111 1 13345667777776653 4444 333332 366777777
Q ss_pred ecCCCceeeccC-CCCcccccccCCCCC
Q 004197 734 SGCDKLKIFGAD-LSQNNEVDQLGIPAQ 760 (769)
Q Consensus 734 ~~C~~L~~l~~~-~~~~~~l~~l~i~~~ 760 (769)
++| +++.+|.. +..++.|+.+++.++
T Consensus 502 ~~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 502 ASN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 766 35555433 456666666666554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=305.24 Aligned_cols=477 Identities=17% Similarity=0.163 Sum_probs=296.9
Q ss_pred EEEEeCCcccccCCccccCcceEEEeecCCCCCCC-C-ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecC
Q 004197 197 AFAVRNKDVWKWPDADALKKYFAIFLKDSIINDIP-E-VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTR 273 (769)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~-~-~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~ 273 (769)
.+......++.+|. .++++++|++++|.+..+. . ..++++|+ |.+.++.....++ .+.|.++++|++|+|++
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~---~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC---TTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC---HHHhcCCCCCCEEECCC
Confidence 45556778888887 7899999999999997764 3 34899999 9999987777776 67789999999999999
Q ss_pred cccCCC-CccccccCCccEEEeccccccccChhh--hhccCCCcEEEeecCCCccc--chhhccCCCCcEEEccCCcCcc
Q 004197 274 MRLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAI--IGKLGNLEILSFWRSDIVHL--PKALGQLTKLRLLDLTDCFHLK 348 (769)
Q Consensus 274 ~~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~--i~~L~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~l~ 348 (769)
|.+..+ |..++++++|++|+|++|.++...|.. ++++++|++|++++|.+..+ +..++++++|++|++++|. +.
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IF 161 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CC
Confidence 999965 889999999999999999988621454 99999999999999998866 3579999999999999987 44
Q ss_pred ccChhhhcCC--CCccEEEccCCccccceeccccccccCCchhhcCCC------CccEEEEEeeCCC-CCCcccc----c
Q 004197 349 VIAPDVISSL--IRLEELYMGNCSIEWEVERVNSERSNASLDELMLLP------WLTTIEINIKNDI-ILPEGFF----A 415 (769)
Q Consensus 349 ~~~~~~~~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~------~L~~L~l~~~~~~-~~~~~~~----~ 415 (769)
.+....++.+ ++|+.|++++|.+....+ ..++.++ .|+.|+++++... ..+..+. .
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~-----------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVS-----------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCC-----------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred eeCHHHcccccCCccceEECCCCccccccc-----------cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 4433337766 889999998887764333 2222222 3778888777532 2222211 2
Q ss_pred ccccEEEEE---------------------------------EcCCccccccccccccccccccccccCcccccceEEee
Q 004197 416 RKLERFKIS---------------------------------IGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLK 462 (769)
Q Consensus 416 ~~L~~l~i~---------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 462 (769)
..+..+.+. ...+ .+..++. .....+++|+.|+++
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~-----------~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNS-----------RVFETLKDLKVLNLA 298 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECS-----------CCSSSCCCCCEEEEE
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC-cccccCh-----------hhhhcCCCCCEEECC
Confidence 233333221 0000 0000000 002234455555555
Q ss_pred cccccccccc-ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccc
Q 004197 463 LDFTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHN 541 (769)
Q Consensus 463 ~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~ 541 (769)
.+.+...... +..+++|+.|++.++......+.. +..+++|+.|+++++. +..+. ......+++|+.|.+++
T Consensus 299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~-i~~~~----~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN--FYGLPKVAYIDLQKNH-IAIIQ----DQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS--CSSCTTCCEEECCSCC-CCCCC----SSCSCSCCCCCEEEEET
T ss_pred CCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH--hcCCCCCCEEECCCCC-CCccC----hhhhcCCCCCCEEECCC
Confidence 5544443333 445555555555544332221111 3345555555555442 11110 00123345555555544
Q ss_pred cccccccccccccccccCCccEEEEcCCC-------------------CCccccchHHhhcCCCCcEEEEccCchhhhhh
Q 004197 542 LINMQRICIDRLKVESFNKLKTIKVENCD-------------------ELSNIFWLSTAKCLPRLERVAVINCSKMKEIF 602 (769)
Q Consensus 542 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~-------------------~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~ 602 (769)
+. ++.+ ..+++|+.|.++++. .+..++....+..+++|+.|+++++..- .++
T Consensus 372 N~-l~~i-------~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~-~~~ 442 (844)
T 3j0a_A 372 NA-LTTI-------HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS-SCS 442 (844)
T ss_dssp CC-SCCC-------SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC-CCC
T ss_pred CC-CCcc-------cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc-ccc
Confidence 32 1111 113334444443331 2233222223457788888888876532 111
Q ss_pred hcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccc
Q 004197 603 AIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQ 682 (769)
Q Consensus 603 ~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 682 (769)
... ....+++|+.|++++|.++.+|.....+..+..+++|+.|++++| .++.++ +..+.++++|++|++++| +++
T Consensus 443 ~~~--~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~ 517 (844)
T 3j0a_A 443 GDQ--TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLP-PGVFSHLTALRGLSLNSN-RLT 517 (844)
T ss_dssp SSS--SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCC-TTSSSSCCSCSEEEEESC-CCS
T ss_pred ccc--ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccC-hhHccchhhhheeECCCC-CCC
Confidence 110 123468888888888888777665555566778888999999886 577664 455678899999999988 676
Q ss_pred eeeccccccCCcCeeeecccCccccccCcccccccCCCccccCCCcceEEEecCC
Q 004197 683 EIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCD 737 (769)
Q Consensus 683 ~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~ 737 (769)
.++... ..++|+.|+++++ .++.++... +++|+.|++++.|
T Consensus 518 ~l~~~~---------~~~~L~~L~Ls~N-~l~~~~~~~----~~~L~~l~l~~Np 558 (844)
T 3j0a_A 518 VLSHND---------LPANLEILDISRN-QLLAPNPDV----FVSLSVLDITHNK 558 (844)
T ss_dssp SCCCCC---------CCSCCCEEEEEEE-CCCCCCSCC----CSSCCEEEEEEEC
T ss_pred ccChhh---------hhccccEEECCCC-cCCCCChhH----hCCcCEEEecCCC
Confidence 653321 1167899999884 566665542 2688889888743
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.2e-30 Score=293.10 Aligned_cols=476 Identities=14% Similarity=0.135 Sum_probs=218.2
Q ss_pred CcccccCCccccCcceEEEeecCCCCCCCCccCCCCcEEEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCC-c
Q 004197 203 KDVWKWPDADALKKYFAIFLKDSIINDIPEVLESPQLEFLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP-S 281 (769)
Q Consensus 203 ~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lrl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~ 281 (769)
..++.+|. ...+++++|++++|.+..++ ...|.++++|++|++++|.++.++ .
T Consensus 15 ~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~-------------------------~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 15 RSFTSIPS-GLTAAMKSLDLSFNKITYIG-------------------------HGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp SCCSSCCS-CCCTTCCEEECCSSCCCEEC-------------------------SSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred Cccccccc-cCCCCccEEECcCCccCccC-------------------------hhhhhcCCcccEEECCCCCcCccChh
Confidence 44455554 33456666666666654443 223455566666666666555443 4
Q ss_pred cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcc--cchhhccCCCCcEEEccCCcCccccChhhhcCCC
Q 004197 282 SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH--LPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLI 359 (769)
Q Consensus 282 ~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~ 359 (769)
.++.+++|++|++++|.++.++|..++++++|++|++++|.+.. .|..++++++|++|++++|..+..+|...+++++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 45566666666666666555534445666666666666665553 2445555666666666555444555543355566
Q ss_pred CccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccc--cccccEEEEEEcCCccccccccc
Q 004197 360 RLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFF--ARKLERFKISIGNESFMASLPVA 437 (769)
Q Consensus 360 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~l~i~~~~~~~~~~l~~~ 437 (769)
+|++|++++|.+....+ ..++.+++|+.|++..+....++.+.. .++|+.|.+..... ..++..
T Consensus 149 ~L~~L~L~~n~l~~~~~-----------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~ 214 (549)
T 2z81_A 149 SLNELEIKALSLRNYQS-----------QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL---ARFQFS 214 (549)
T ss_dssp EEEEEEEEETTCCEECT-----------TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC---TTCCCC
T ss_pred ccCeeeccCCcccccCh-----------hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc---cccccc
Confidence 66666665555543332 445555555666655555444444332 44555555432221 111000
Q ss_pred cccccccccccccCcccccceEEeecccccccccc-----ccccccccEEEecccCCccc--ccc--cCCCCCCCCCceE
Q 004197 438 KDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMK-----LQAINKVEYLWLDKLQGVKN--VLF--DLDTNGLPQLKLL 508 (769)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-----l~~~~~L~~L~l~~~~~~~~--~~~--~~~~~~l~~L~~L 508 (769)
.. .......+++.+.+..+........ +..+++|+.|.+.++..... ... ......+++|+.|
T Consensus 215 ~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 286 (549)
T 2z81_A 215 PL--------PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286 (549)
T ss_dssp CC--------SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEE
T ss_pred cc--------chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccc
Confidence 00 0012344556666655543322211 24455666666665542211 000 0012345566666
Q ss_pred EEecCCCcceeccCcccc-ccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccc-hHHhhcCCC
Q 004197 509 WVQNNPDFFCIVDSMEMV-ACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFW-LSTAKCLPR 586 (769)
Q Consensus 509 ~l~~~~~l~~i~~~~~~~-~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~ 586 (769)
.+.++..-... ...... ....+++|+.|.+.++. ++.++... ...+++|+.|++++|......++ ...+..+++
T Consensus 287 ~l~~~~i~~~~-~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 287 TIRRLHIPQFY-LFYDLSTVYSLLEKVKRITVENSK-VFLVPCSF--SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp EEESCBCSCGG-GSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHH--HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred cccccccchhh-hcccchhhhhhcccceEEEeccCc-cccCCHHH--HhcCccccEEEccCCccccccccchhhhhcccc
Confidence 66554311100 000000 01123455555555532 33332210 12355566666655542222211 011344555
Q ss_pred CcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhh
Q 004197 587 LERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRS 666 (769)
Q Consensus 587 L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 666 (769)
|+.|++++|.. ..++... .....+++|++|++++|+++.++ ..+..+++|+.|++++|. ++.++. . -
T Consensus 363 L~~L~Ls~N~l-~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp------~~~~~~~~L~~L~Ls~N~-l~~l~~-~---~ 429 (549)
T 2z81_A 363 LQTLVLSQNHL-RSMQKTG-EILLTLKNLTSLDISRNTFHPMP------DSCQWPEKMRFLNLSSTG-IRVVKT-C---I 429 (549)
T ss_dssp CCEEECTTSCC-CCHHHHH-HHGGGCTTCCEEECTTCCCCCCC------SCCCCCTTCCEEECTTSC-CSCCCT-T---S
T ss_pred CcEEEccCCcc-cccccch-hhhhcCCCCCEEECCCCCCccCC------hhhcccccccEEECCCCC-cccccc-h---h
Confidence 66666655432 2221100 01234555666666665555431 223345555666665543 444321 1 1
Q ss_pred cccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCCCccccCCCcceEEEecCCCceeeccC-
Q 004197 667 FEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCDKLKIFGAD- 745 (769)
Q Consensus 667 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~l~~~- 745 (769)
.++|++|++++| +++.+ ...+++|++|+++++ .++.+|.. . .+++|++|++++| +++.++..
T Consensus 430 ~~~L~~L~Ls~N-~l~~~-----------~~~l~~L~~L~Ls~N-~l~~ip~~-~--~l~~L~~L~Ls~N-~l~~~~~~~ 492 (549)
T 2z81_A 430 PQTLEVLDVSNN-NLDSF-----------SLFLPRLQELYISRN-KLKTLPDA-S--LFPVLLVMKISRN-QLKSVPDGI 492 (549)
T ss_dssp CTTCSEEECCSS-CCSCC-----------CCCCTTCCEEECCSS-CCSSCCCG-G--GCTTCCEEECCSS-CCCCCCTTG
T ss_pred cCCceEEECCCC-Chhhh-----------cccCChhcEEECCCC-ccCcCCCc-c--cCccCCEEecCCC-ccCCcCHHH
Confidence 135555555555 33332 123445555665554 44555542 1 2255666666555 34444433
Q ss_pred CCCcccccccCCCCC
Q 004197 746 LSQNNEVDQLGIPAQ 760 (769)
Q Consensus 746 ~~~~~~l~~l~i~~~ 760 (769)
...++.|+.+++.++
T Consensus 493 ~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 493 FDRLTSLQKIWLHTN 507 (549)
T ss_dssp GGGCTTCCEEECCSS
T ss_pred HhcCcccCEEEecCC
Confidence 345555555555443
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=9.8e-30 Score=293.08 Aligned_cols=493 Identities=17% Similarity=0.154 Sum_probs=286.8
Q ss_pred eEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEEec
Q 004197 218 FAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLD 295 (769)
Q Consensus 218 r~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 295 (769)
+.++.+++.+..+|.... ++++ +.+.++.. ..++ ...|.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l-~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQL-RRLP---AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCC-CCCC---GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCC-CCcC---HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 467888888888886443 7889 88887653 4555 66789999999999999999876 6779999999999999
Q ss_pred cccccccChhhhhccCCCcEEEeecCCCcccc-hhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccc
Q 004197 296 QSILGDIDIAIIGKLGNLEILSFWRSDIVHLP-KALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWE 374 (769)
Q Consensus 296 ~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~ 374 (769)
+|.++.+++..|+++++|++|++++|.+..+| ..++++++|++|++++|. +...+...++++++|++|++++|.+...
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccccc
Confidence 99999995557999999999999999999887 579999999999999987 5555554488999999999999887633
Q ss_pred eeccccccccCCchhh--cCCCCccEEEEEeeCCCCCCcccc--cccccEEEEEEcCCcccccccccccccccccccccc
Q 004197 375 VERVNSERSNASLDEL--MLLPWLTTIEINIKNDIILPEGFF--ARKLERFKISIGNESFMASLPVAKDWFRSRSHFLIN 450 (769)
Q Consensus 375 ~~~~~~~~~~~~l~~l--~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 450 (769)
.+ ..+ ..+++|+.|+++++....+++... ..+|+.+.+. ......... . .+...
T Consensus 161 ~~-----------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~--~~~l~~~~~---~------~~~~~ 218 (680)
T 1ziw_A 161 KS-----------EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN--NVQLGPSLT---E------KLCLE 218 (680)
T ss_dssp CH-----------HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT--TCCCHHHHH---H------HHHHH
T ss_pred CH-----------HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc--ccccChhhH---H------HHHHH
Confidence 32 233 356889999999988766654432 4555554421 110000000 0 00000
Q ss_pred CcccccceEEeecccccccccc-cccccc--ccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccc
Q 004197 451 NNRESLRELKLKLDFTDVRSMK-LQAINK--VEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVA 527 (769)
Q Consensus 451 ~~~~~L~~l~l~~~~~~~~~~~-l~~~~~--L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 527 (769)
....+++.|.++.+........ +..++. |+.|++.++......+.. ++.+++|++|+++++.. ..+. ...
T Consensus 219 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l-~~~~----~~~ 291 (680)
T 1ziw_A 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS--FAWLPQLEYFFLEYNNI-QHLF----SHS 291 (680)
T ss_dssp HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSCCB-SEEC----TTT
T ss_pred hhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc--ccCcccccEeeCCCCcc-CccC----hhh
Confidence 0124566666666554444333 444433 666766666543322222 45566667776666532 1110 012
Q ss_pred cccCCccceeecccccccc-----cccc-ccccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCch-hhh
Q 004197 528 CDAFPLLESLTLHNLINMQ-----RICI-DRLKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSK-MKE 600 (769)
Q Consensus 528 ~~~f~~L~~L~l~~~~~l~-----~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~-l~~ 600 (769)
...+++|+.|.+.++..-. .++. .......+++|++|++++|. +..+++ ..+..+++|++|++++|.. +..
T Consensus 292 ~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~ 369 (680)
T 1ziw_A 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS-NMFTGLINLKYLSLSNSFTSLRT 369 (680)
T ss_dssp TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-TTTTTCTTCCEEECTTCBSCCCE
T ss_pred hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-hHhccccCCcEEECCCCchhhhh
Confidence 3445666666665432110 1110 00113345666666666653 333332 2345566666666665531 111
Q ss_pred hhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccc
Q 004197 601 IFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRG 680 (769)
Q Consensus 601 ~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 680 (769)
++.... .....++|+.|++++|+++.+ .+..+..+++|+.|++++|.--..+ +...+.++++|++|++++|.
T Consensus 370 l~~~~f-~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~l~~L~~L~Ls~n~- 441 (680)
T 1ziw_A 370 LTNETF-VSLAHSPLHILNLTKNKISKI-----ESDAFSWLGHLEVLDLGLNEIGQEL-TGQEWRGLENIFEIYLSYNK- 441 (680)
T ss_dssp ECTTTT-GGGTTSCCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCEEEC-CSGGGTTCTTCCEEECCSCS-
T ss_pred cchhhh-cccccCcCceEECCCCCCCeE-----ChhhhhCCCCCCEEeCCCCcCcccc-CcccccCcccccEEecCCCC-
Confidence 111000 000123555555555555444 2233344555555555554322222 22334445555555555442
Q ss_pred cceeecc---------------------ccccCCcCeeeecccCccccccCcccccccCCCccccCCCcceEEEecCCCc
Q 004197 681 LQEIISE---------------------DRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCDKL 739 (769)
Q Consensus 681 l~~i~~~---------------------~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~~L 739 (769)
+..+... +..+ .....+++|+.|+++++ .++.++..... .+++|++|+++++. +
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p--~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~-~l~~L~~L~Ls~N~-l 516 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSP--SPFQPLRNLTILDLSNN-NIANINDDMLE-GLEKLEILDLQHNN-L 516 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTSCCBCTTCSS--CTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSSC-C
T ss_pred cceeChhhhhcCcccccchhccccccccccCC--cccccCCCCCEEECCCC-CCCcCChhhhc-cccccCEEeCCCCC-c
Confidence 2221100 0000 01334667888888774 56666654322 34788888888874 5
Q ss_pred eeeccC---------CCCcccccccCCCCC
Q 004197 740 KIFGAD---------LSQNNEVDQLGIPAQ 760 (769)
Q Consensus 740 ~~l~~~---------~~~~~~l~~l~i~~~ 760 (769)
+.++.. ...++.|+.+++.++
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 517 ARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp GGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 554321 456677888877665
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=294.29 Aligned_cols=482 Identities=18% Similarity=0.142 Sum_probs=277.6
Q ss_pred eEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCccc-CCC-CccccccCCccEEEe
Q 004197 218 FAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRL-LSL-PSSIDLLVNLRTLCL 294 (769)
Q Consensus 218 r~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i-~~l-p~~i~~l~~L~~L~L 294 (769)
+..+.+++++..+|. -.++++ |.+.++....-. ...|.++++|++|++++|.. ..+ |..|+++++|++|+|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~----~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVT----ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEEC----SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccC----hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 567778888888987 568899 999987654333 35578999999999999954 466 778999999999999
Q ss_pred ccccccccChhhhhccCCCcEEEeecCCCcc-cchh--hccCCCCcEEEccCCcCcccc-ChhhhcCCCCccEEEccCCc
Q 004197 295 DQSILGDIDIAIIGKLGNLEILSFWRSDIVH-LPKA--LGQLTKLRLLDLTDCFHLKVI-APDVISSLIRLEELYMGNCS 370 (769)
Q Consensus 295 ~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~~-~~~~~~~L~~L~~L~l~~~~ 370 (769)
++|.++.+.|..++++++|++|++++|.+.. +|.. ++++++|++|++++|. +..+ +...++++++|++|++++|.
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 9999998878999999999999999998885 5655 8999999999999987 4444 33348999999999999998
Q ss_pred cccceeccccccccCCchhhcCC--CCccEEEEEeeCCCCC-Ccccc-------cccccEEEEEEcCCcccccccccccc
Q 004197 371 IEWEVERVNSERSNASLDELMLL--PWLTTIEINIKNDIIL-PEGFF-------ARKLERFKISIGNESFMASLPVAKDW 440 (769)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~l~~l--~~L~~L~l~~~~~~~~-~~~~~-------~~~L~~l~i~~~~~~~~~~l~~~~~~ 440 (769)
+....+ ..+..+ ++|+.|+++.+..... +..+. ...|+.|.+.... .....+..+..
T Consensus 160 i~~~~~-----------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~ 226 (844)
T 3j0a_A 160 IFLVCE-----------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSN 226 (844)
T ss_dssp CCCCCS-----------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGG
T ss_pred CCeeCH-----------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc--CchhHHHHHHh
Confidence 764333 444444 7899999998875442 22211 1237776654221 11111110000
Q ss_pred -ccc--------------------------cccccccCcccccceEEeecccccccccc-ccccccccEEEecccCCccc
Q 004197 441 -FRS--------------------------RSHFLINNNRESLRELKLKLDFTDVRSMK-LQAINKVEYLWLDKLQGVKN 492 (769)
Q Consensus 441 -~~~--------------------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~ 492 (769)
... ...|. .....+++.|+++.+........ +..+++|+.|++.++.....
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA-GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT-TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred hcCcccccceecccccccccccccccCCCChhhhh-ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC
Confidence 000 00000 00124566666666655544444 56666777777766554333
Q ss_pred ccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCC
Q 004197 493 VLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDEL 572 (769)
Q Consensus 493 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 572 (769)
.+.. +..+++|++|+++++.- ..+ .......+++|+.|.++++ .+..++.. ....+++|+.|++++|. +
T Consensus 306 ~~~~--~~~l~~L~~L~Ls~N~l-~~~----~~~~~~~l~~L~~L~L~~N-~i~~~~~~--~~~~l~~L~~L~Ls~N~-l 374 (844)
T 3j0a_A 306 ADEA--FYGLDNLQVLNLSYNLL-GEL----YSSNFYGLPKVAYIDLQKN-HIAIIQDQ--TFKFLEKLQTLDLRDNA-L 374 (844)
T ss_dssp CTTT--TTTCSSCCEEEEESCCC-SCC----CSCSCSSCTTCCEEECCSC-CCCCCCSS--CSCSCCCCCEEEEETCC-S
T ss_pred ChHH--hcCCCCCCEEECCCCCC-Ccc----CHHHhcCCCCCCEEECCCC-CCCccChh--hhcCCCCCCEEECCCCC-C
Confidence 2222 45566777777766642 111 1113345566777776654 23333321 13346677777776653 3
Q ss_pred ccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecC
Q 004197 573 SNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHC 652 (769)
Q Consensus 573 ~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c 652 (769)
+.++ .+++|+.|+++++.. ..++. ...+++.|++++|+++.+.. ...+..+++|+.|++++|
T Consensus 375 ~~i~------~~~~L~~L~l~~N~l-~~l~~-------~~~~l~~L~ls~N~l~~l~~----~~~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 375 TTIH------FIPSIPDIFLSGNKL-VTLPK-------INLTANLIHLSENRLENLDI----LYFLLRVPHLQILILNQN 436 (844)
T ss_dssp CCCS------SCCSCSEEEEESCCC-CCCCC-------CCTTCCEEECCSCCCCSSTT----HHHHTTCTTCCEEEEESC
T ss_pred Cccc------CCCCcchhccCCCCc-ccccc-------cccccceeecccCccccCch----hhhhhcCCccceeeCCCC
Confidence 3332 256666666666532 22221 12334444444444433200 011224566666666664
Q ss_pred CCcceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCCCccccCCCcceEE
Q 004197 653 HKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLV 732 (769)
Q Consensus 653 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~ 732 (769)
. ++.++.......+++|++|++++| .++.+....... .....+++|+.|+++++ .++.++..... .+++|++|+
T Consensus 437 ~-l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~ 510 (844)
T 3j0a_A 437 R-FSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCW--DVFEGLSHLQVLYLNHN-YLNSLPPGVFS-HLTALRGLS 510 (844)
T ss_dssp C-CCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCS--SCSSCBCCEECCCCCHH-HHTTCCTTSSS-SCCSCSEEE
T ss_pred c-ccccccccccccCCccccccCCCC-ccccccccccch--hhhcCcccccEEECCCC-cccccChhHcc-chhhhheeE
Confidence 2 433322222334556666666655 333221111000 01234455666666664 45555543221 235666666
Q ss_pred EecCCCceeeccCCCCcccccccCC
Q 004197 733 VSGCDKLKIFGADLSQNNEVDQLGI 757 (769)
Q Consensus 733 i~~C~~L~~l~~~~~~~~~l~~l~i 757 (769)
++++ +|+.+|..... +.|+.+++
T Consensus 511 Ls~N-~l~~l~~~~~~-~~L~~L~L 533 (844)
T 3j0a_A 511 LNSN-RLTVLSHNDLP-ANLEILDI 533 (844)
T ss_dssp EESC-CCSSCCCCCCC-SCCCEEEE
T ss_pred CCCC-CCCccChhhhh-ccccEEEC
Confidence 6665 45555544333 44554444
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=278.05 Aligned_cols=474 Identities=16% Similarity=0.107 Sum_probs=336.7
Q ss_pred EEEeCCcccccCC--ccccCcceEEEeecCCCCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEec
Q 004197 198 FAVRNKDVWKWPD--ADALKKYFAIFLKDSIINDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLT 272 (769)
Q Consensus 198 ~~~~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~ 272 (769)
+...+..+...+. ....+++++|++++|.+..++. ..++++|+ |.+.++.. ..++ .+.|.++++|++|+++
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~---~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLA---LGAFSGLSSLQKLVAV 108 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEEC---TTTTTTCTTCCEEECT
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC-CccC---HhhhcCcccccccccc
Confidence 4444444444432 2456789999999999987764 33799999 99887764 3444 5678999999999999
Q ss_pred CcccCCCCc-cccccCCccEEEeccccccc--cChhhhhccCCCcEEEeecCCCcccc-hhhccCCCC----cEEEccCC
Q 004197 273 RMRLLSLPS-SIDLLVNLRTLCLDQSILGD--IDIAIIGKLGNLEILSFWRSDIVHLP-KALGQLTKL----RLLDLTDC 344 (769)
Q Consensus 273 ~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~--l~p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L----~~L~l~~~ 344 (769)
+|.++.+|. .++++++|++|++++|.++. + |..++++++|++|++++|.+..++ ..++.+++| ++|++++|
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred ccccccCCCccccccccccEEecCCCccceecC-hhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 999998875 69999999999999999886 6 899999999999999999998764 568888888 89999998
Q ss_pred cCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCC------CCcccc--cc
Q 004197 345 FHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDII------LPEGFF--AR 416 (769)
Q Consensus 345 ~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~------~~~~~~--~~ 416 (769)
. +..++++.+..+ +|+.|+++++..... .....+..+++++.+.+....... ++.... ..
T Consensus 188 ~-l~~~~~~~~~~~-~L~~L~l~~n~~~~~----------~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 188 P-MNFIQPGAFKEI-RLHKLTLRNNFDSLN----------VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp C-CCEECTTTTTTC-EEEEEEEESCCSCTT----------HHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred C-ceecCHHHhccC-cceeEeccccccccc----------chhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence 6 777777645444 899999988754311 112456777888777666543221 111111 22
Q ss_pred c--ccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCCccccc
Q 004197 417 K--LERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVL 494 (769)
Q Consensus 417 ~--L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 494 (769)
+ ++.+.+.... ...+..|. ....+++++.+++..+.....+..+..+ +|+.|++.++... ..
T Consensus 256 ~l~l~~l~l~~~~-~~~~~~~~------------~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l- 319 (570)
T 2z63_A 256 NLTIEEFRLAYLD-YYLDDIID------------LFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QF- 319 (570)
T ss_dssp GSEEEEEEEEETT-EEESCSTT------------TTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SC-
T ss_pred ccchhhhhhhcch-hhhhhchh------------hhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-cc-
Confidence 2 2233322110 11111111 1346788999999988876555556666 9999999988754 22
Q ss_pred ccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCcc
Q 004197 495 FDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSN 574 (769)
Q Consensus 495 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 574 (769)
+...+++|+.|.+.++..... .....+++|+.|.++++. ++...........+++|+.|++++|. +..
T Consensus 320 ---~~~~l~~L~~L~l~~n~~~~~-------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~ 387 (570)
T 2z63_A 320 ---PTLKLKSLKRLTFTSNKGGNA-------FSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VIT 387 (570)
T ss_dssp ---CBCBCSSCCEEEEESCBSCCB-------CCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEE
T ss_pred ---CcccccccCEEeCcCCccccc-------cccccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-ccc
Confidence 235789999999999863222 233789999999999864 33321111124578999999999985 555
Q ss_pred ccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCC
Q 004197 575 IFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHK 654 (769)
Q Consensus 575 l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~ 654 (769)
+++ .+..+++|++|++.+|......+.. .+..+++|+.|++++|.++.+ .+..+..+++|+.|++++|.-
T Consensus 388 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l 457 (570)
T 2z63_A 388 MSS--NFLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVA-----FNGIFNGLSSLEVLKMAGNSF 457 (570)
T ss_dssp EEE--EEETCTTCCEEECTTSEEESCTTSC---TTTTCTTCCEEECTTSCCEEC-----CTTTTTTCTTCCEEECTTCEE
T ss_pred ccc--cccccCCCCEEEccCCccccccchh---hhhcCCCCCEEeCcCCccccc-----chhhhhcCCcCcEEECcCCcC
Confidence 554 2678999999999998643322211 244689999999999988775 345667899999999999864
Q ss_pred c-ceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCCCccccCCCcceEEE
Q 004197 655 L-KYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVV 733 (769)
Q Consensus 655 l-~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i 733 (769)
. ..+ +..+..+++|++|++++| .++.+.+. . ...+++|++|++++| .++.++..... .+++|++|++
T Consensus 458 ~~~~~--p~~~~~l~~L~~L~l~~n-~l~~~~~~-~------~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l 525 (570)
T 2z63_A 458 QENFL--PDIFTELRNLTFLDLSQC-QLEQLSPT-A------FNSLSSLQVLNMASN-QLKSVPDGIFD-RLTSLQKIWL 525 (570)
T ss_dssp GGGEE--CSCCTTCTTCCEEECTTS-CCCEECTT-T------TTTCTTCCEEECCSS-CCSCCCTTTTT-TCTTCCEEEC
T ss_pred ccccc--hhhhhcccCCCEEECCCC-ccccCChh-h------hhcccCCCEEeCCCC-cCCCCCHHHhh-cccCCcEEEe
Confidence 3 234 356788999999999999 56665321 1 345688999999997 67777764322 4599999999
Q ss_pred ecCCC
Q 004197 734 SGCDK 738 (769)
Q Consensus 734 ~~C~~ 738 (769)
++++-
T Consensus 526 ~~N~~ 530 (570)
T 2z63_A 526 HTNPW 530 (570)
T ss_dssp CSSCB
T ss_pred cCCcc
Confidence 99653
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.4e-29 Score=279.50 Aligned_cols=461 Identities=16% Similarity=0.097 Sum_probs=278.0
Q ss_pred EEEeCCcccccCC--ccccCcceEEEeecCCCCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEec
Q 004197 198 FAVRNKDVWKWPD--ADALKKYFAIFLKDSIINDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLT 272 (769)
Q Consensus 198 ~~~~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~ 272 (769)
+...+..+...+. ....+++++|++++|.+..++. ...+++|+ |.+.++... .++ ...|.++++|++|+++
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~---~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLS---SSWFGPLSSLKYLNLM 106 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCC---HHHHTTCTTCCEEECT
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccC---HHHhccCCCCcEEECC
Confidence 4445555544432 2446788899999888866652 23666777 666655433 333 4556677777777777
Q ss_pred CcccCC--CCccccccCCccEEEecccc-ccccChhhhhccCCCcEEEeecCCCcc-cchhhccCCCCcEEEccCCcCcc
Q 004197 273 RMRLLS--LPSSIDLLVNLRTLCLDQSI-LGDIDIAIIGKLGNLEILSFWRSDIVH-LPKALGQLTKLRLLDLTDCFHLK 348 (769)
Q Consensus 273 ~~~i~~--lp~~i~~l~~L~~L~L~~~~-l~~l~p~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~l~ 348 (769)
+|.++. .|..++++++|++|++++|. +..+++..++++++|++|++++|.+.. .|..++++++|++|++.+|. ..
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~ 185 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SA 185 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-ST
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-cc
Confidence 777663 35566777777777777776 566644567777777777777776663 56667777777777776654 44
Q ss_pred ccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcCC
Q 004197 349 VIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGNE 428 (769)
Q Consensus 349 ~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~ 428 (769)
.+|...++.+++|++|++++|.+..... ........+++|+.|++.++.......
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~~~~~~~L~~L~l~~n~l~~~~~----------------- 240 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQF--------SPLPVDEVSSPMKKLAFRGSVLTDESF----------------- 240 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCC--------CCCSSCCCCCCCCEEEEESCEEEHHHH-----------------
T ss_pred ccchhhHhhcccccEEEccCCccccccc--------cccchhhhhhcccceeccccccchhHH-----------------
Confidence 5555434566777777777666542100 001122345566666666553211000
Q ss_pred ccccccccccccccccccccccCcccccceEEeeccccccc------ccc-ccccccccEEEecccCCcccccc-cCC--
Q 004197 429 SFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVR------SMK-LQAINKVEYLWLDKLQGVKNVLF-DLD-- 498 (769)
Q Consensus 429 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~------~~~-l~~~~~L~~L~l~~~~~~~~~~~-~~~-- 498 (769)
..++ .....+.+++.+.+..+..... ... +..+++|+.|.+.++........ ...
T Consensus 241 ---~~l~------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 241 ---NELL------------KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp ---HHHH------------GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred ---HHHH------------HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence 0000 0012334455555554432221 111 35667778887776543221100 000
Q ss_pred CCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccc-
Q 004197 499 TNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFW- 577 (769)
Q Consensus 499 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~- 577 (769)
....++|+.|.+.++. +..+.. .....+++|+.|.++++.-...++......+.+++|+.|++++| .++.+++
T Consensus 306 ~~~~~~L~~L~l~~n~-l~~ip~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 379 (549)
T 2z81_A 306 YSLLEKVKRITVENSK-VFLVPC----SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKT 379 (549)
T ss_dssp HHHSTTCCEEEEESSC-CCCCCH----HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHH
T ss_pred hhhcccceEEEeccCc-cccCCH----HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccc
Confidence 1124688899998874 222210 01135788999999887543333221112456889999999987 4555543
Q ss_pred hHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcce
Q 004197 578 LSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKY 657 (769)
Q Consensus 578 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~ 657 (769)
...+..+++|++|++++|. +..++. ....+++|+.|++++|.++.+... ..++|+.|++++| .++.
T Consensus 380 ~~~~~~l~~L~~L~Ls~N~-l~~lp~----~~~~~~~L~~L~Ls~N~l~~l~~~--------~~~~L~~L~Ls~N-~l~~ 445 (549)
T 2z81_A 380 GEILLTLKNLTSLDISRNT-FHPMPD----SCQWPEKMRFLNLSSTGIRVVKTC--------IPQTLEVLDVSNN-NLDS 445 (549)
T ss_dssp HHHGGGCTTCCEEECTTCC-CCCCCS----CCCCCTTCCEEECTTSCCSCCCTT--------SCTTCSEEECCSS-CCSC
T ss_pred hhhhhcCCCCCEEECCCCC-CccCCh----hhcccccccEEECCCCCcccccch--------hcCCceEEECCCC-Chhh
Confidence 1346789999999999974 445543 234578999999999988765211 2368999999997 4665
Q ss_pred ecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCCCccccCCCcceEEEecCC
Q 004197 658 IFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCD 737 (769)
Q Consensus 658 l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~ 737 (769)
++ ..+++|++|++++| +++.++. ...+++|++|+++++ .++.++.+... .+++|++|++++||
T Consensus 446 ~~-----~~l~~L~~L~Ls~N-~l~~ip~---------~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 446 FS-----LFLPRLQELYISRN-KLKTLPD---------ASLFPVLLVMKISRN-QLKSVPDGIFD-RLTSLQKIWLHTNP 508 (549)
T ss_dssp CC-----CCCTTCCEEECCSS-CCSSCCC---------GGGCTTCCEEECCSS-CCCCCCTTGGG-GCTTCCEEECCSSC
T ss_pred hc-----ccCChhcEEECCCC-ccCcCCC---------cccCccCCEEecCCC-ccCCcCHHHHh-cCcccCEEEecCCC
Confidence 42 47889999999998 6766532 234678999999996 67777665322 34899999999987
Q ss_pred Cce
Q 004197 738 KLK 740 (769)
Q Consensus 738 ~L~ 740 (769)
-.-
T Consensus 509 ~~~ 511 (549)
T 2z81_A 509 WDC 511 (549)
T ss_dssp BCC
T ss_pred ccC
Confidence 543
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.9e-29 Score=288.73 Aligned_cols=160 Identities=10% Similarity=0.001 Sum_probs=76.2
Q ss_pred CCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcc----cccCCcccccccccccceeccCCCCC
Q 004197 559 NKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEA----DVVLPNLEALEISEINVDKIWHYNHL 634 (769)
Q Consensus 559 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~----~~~~~~L~~L~L~~~~l~~i~~~~~~ 634 (769)
++|+.|++++|. +..+|. ..+..+++|+.|++++|. +..++...... ...+++|+.|+|++|+++.+
T Consensus 673 ~~L~~L~Ls~N~-L~~lp~-~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l------ 743 (876)
T 4ecn_A 673 INASTVTLSYNE-IQKFPT-ELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL------ 743 (876)
T ss_dssp CCEEEEECCSSC-CCSCCH-HHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC------
T ss_pred CCcCEEEccCCc-CCccCH-HHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccc------
Confidence 356666666553 334432 233455666666666543 22333221110 11223666666666655543
Q ss_pred CCccC--cCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcc
Q 004197 635 PIMLP--HFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPE 712 (769)
Q Consensus 635 ~~~l~--~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 712 (769)
+..+. .+++|+.|++++| .++.+ +..+.++++|+.|++++|+.+..-......+. .+..+++|+.|+|++|.
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N-~L~~l--p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~- 817 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYN-CFSSF--PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSND- 817 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSS-CCSSC--CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC-
T ss_pred hHHhhhccCCCcCEEEeCCC-CCCcc--chhhhcCCCCCEEECCCCCCcccccccccChH--HHhcCCCCCEEECCCCC-
Confidence 12222 5666666666664 34444 22345666666666665431111000000111 13345666666666653
Q ss_pred cccccCCCccccCCCcceEEEecCC
Q 004197 713 LRCLYPGMHTLEWPALKFLVVSGCD 737 (769)
Q Consensus 713 L~~l~~~~~~l~~~~L~~L~i~~C~ 737 (769)
+..+|.... ++|+.|++++|+
T Consensus 818 L~~Ip~~l~----~~L~~LdLs~N~ 838 (876)
T 4ecn_A 818 IRKVDEKLT----PQLYILDIADNP 838 (876)
T ss_dssp CCBCCSCCC----SSSCEEECCSCT
T ss_pred CCccCHhhc----CCCCEEECCCCC
Confidence 366665421 566666666665
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.4e-29 Score=283.08 Aligned_cols=186 Identities=15% Similarity=0.175 Sum_probs=92.8
Q ss_pred cCCCCccccccCCccEEEeccccccc------------------cChhhhh--ccCCCcEEEeecCCCc-ccchhhccCC
Q 004197 276 LLSLPSSIDLLVNLRTLCLDQSILGD------------------IDIAIIG--KLGNLEILSFWRSDIV-HLPKALGQLT 334 (769)
Q Consensus 276 i~~lp~~i~~l~~L~~L~L~~~~l~~------------------l~p~~i~--~L~~L~~L~l~~~~l~-~lp~~i~~l~ 334 (769)
++.+|..++++++|++|+|++|.++. + |..++ ++++|++|++++|.+. .+|..+++++
T Consensus 195 l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC-chhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 33355555555555555555555554 5 55555 5555555555555433 4555555555
Q ss_pred CCcEEEccCCcCcc--ccChhhhcCC------CCccEEEccCCccccceeccccccccCCch--hhcCCCCccEEEEEee
Q 004197 335 KLRLLDLTDCFHLK--VIAPDVISSL------IRLEELYMGNCSIEWEVERVNSERSNASLD--ELMLLPWLTTIEINIK 404 (769)
Q Consensus 335 ~L~~L~l~~~~~l~--~~~~~~~~~L------~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~--~l~~l~~L~~L~l~~~ 404 (769)
+|++|++++|..++ .+|.. ++++ ++|++|++++|.+. .+| . .++.+++|+.|+++.|
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~-~ip-----------~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK-TFP-----------VETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS-SCC-----------CHHHHTTCTTCCEEECCSC
T ss_pred CCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC-ccC-----------chhhhccCCCCCEEeCcCC
Confidence 55555555554222 34444 4443 55555555555544 333 2 4555555555555554
Q ss_pred CCC-CCCcccccccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeecccccccccccccccc-ccEE
Q 004197 405 NDI-ILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINK-VEYL 482 (769)
Q Consensus 405 ~~~-~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~-L~~L 482 (769)
... .+| . ...+++|+.|+++.+.....+..+..+++ |+.|
T Consensus 341 ~l~g~ip-~-------------------------------------~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 341 QLEGKLP-A-------------------------------------FGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382 (636)
T ss_dssp CCEEECC-C-------------------------------------CEEEEEESEEECCSSEEEECCTTSEEECTTCCEE
T ss_pred cCccchh-h-------------------------------------hCCCCCCCEEECCCCccccccHhhhhhcccCcEE
Confidence 433 222 1 22334455555555544422222555555 6666
Q ss_pred EecccCCcccccccCCCCCCCCCceEEEecCC
Q 004197 483 WLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNP 514 (769)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (769)
++.++... .++..+....+++|+.|+++++.
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence 66665533 33333222234466666666554
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.6e-29 Score=278.71 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=76.9
Q ss_pred eEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEEec
Q 004197 218 FAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLD 295 (769)
Q Consensus 218 r~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 295 (769)
++++++++.+..+|.... ++|+ +.+.++... .++ .+.|.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-ELW---TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CCC---HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-ccC---hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 678888888877774332 5555 555544322 232 34455555556666655555544 4455555555555555
Q ss_pred cccccccChhhhhccCCCcEEEeecCCCcc--cchhhccCCCCcEEEccCCcCccccChhhhcCCCCc--cEEEccCCcc
Q 004197 296 QSILGDIDIAIIGKLGNLEILSFWRSDIVH--LPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRL--EELYMGNCSI 371 (769)
Q Consensus 296 ~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L--~~L~l~~~~~ 371 (769)
+|.++.+ |.. .+++|++|++++|.+.. +|..++++++|++|++++|. +.. ..++.+++| ++|++++|.+
T Consensus 78 ~N~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 78 HNKLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SSCCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred CCceeec-Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccc
Confidence 5555555 333 55555555555555553 34555555555555555544 222 114444554 5555555544
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.3e-28 Score=279.35 Aligned_cols=425 Identities=13% Similarity=0.058 Sum_probs=299.2
Q ss_pred CCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccC-------------CCCc---------------------
Q 004197 237 PQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLL-------------SLPS--------------------- 281 (769)
Q Consensus 237 ~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-------------~lp~--------------------- 281 (769)
.+++ +.+.++...+.+| .. ++++++|++|+|++|.+. .+|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp---~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVP---DA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEEC---GG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCC---hH-HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchh
Confidence 4677 8898888877888 44 689999999999998652 1111
Q ss_pred ccc-------------------ccCCccEEEec--cccccccChhhhhccCCCcEEEeecCCCcc---------------
Q 004197 282 SID-------------------LLVNLRTLCLD--QSILGDIDIAIIGKLGNLEILSFWRSDIVH--------------- 325 (769)
Q Consensus 282 ~i~-------------------~l~~L~~L~L~--~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~--------------- 325 (769)
.+. ....++.+.+. +|.++.+ |..++++++|++|++++|.++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccC-CHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 111 00111111111 4567778 8899999999999999999998
Q ss_pred ---cchhhc--cCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCc-ccc-ceeccccccccCCchhhcCC-----
Q 004197 326 ---LPKALG--QLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCS-IEW-EVERVNSERSNASLDELMLL----- 393 (769)
Q Consensus 326 ---lp~~i~--~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~-~~~-~~~~~~~~~~~~~l~~l~~l----- 393 (769)
+|..++ ++++|++|++++|.....+|.. ++++++|++|++++|. +.+ .+| ..++.+
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp-----------~~~~~L~~~~~ 303 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLK-----------DDWQALADAPV 303 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHH-----------HHHHHHHHSGG
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccch-----------HHHHhhhcccc
Confidence 999999 9999999999999877788877 9999999999999997 765 455 445444
Q ss_pred -CCccEEEEEeeCCCCCCc--ccccccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccc-cc
Q 004197 394 -PWLTTIEINIKNDIILPE--GFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTD-VR 469 (769)
Q Consensus 394 -~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~ 469 (769)
++|+.|+++.|....+|. . ...+++|+.|+++.+... .+
T Consensus 304 l~~L~~L~L~~n~l~~ip~~~~-------------------------------------l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 304 GEKIQIIYIGYNNLKTFPVETS-------------------------------------LQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp GGTCCEEECCSSCCSSCCCHHH-------------------------------------HTTCTTCCEEECCSCCCEEEC
T ss_pred CCCCCEEECCCCcCCccCchhh-------------------------------------hccCCCCCEEeCcCCcCccch
Confidence 899999999888766665 3 335566777777777665 44
Q ss_pred cccccccccccEEEecccCCcccccccCCCCCCCC-CceEEEecCCCcceeccCccccccccCCccceeecccccccccc
Q 004197 470 SMKLQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQ-LKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRI 548 (769)
Q Consensus 470 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~ 548 (769)
+ .+..+++|+.|++.++... ..+.. ++.+++ |+.|+++++.- ..+. ..+....+++|+.|.++++.--...
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-~lp~~--l~~l~~~L~~L~Ls~N~l-~~lp---~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-EIPAN--FCGFTEQVENLSFAHNKL-KYIP---NIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-ECCTT--SEEECTTCCEEECCSSCC-SSCC---SCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred h-hhCCCCCCCEEECCCCccc-cccHh--hhhhcccCcEEEccCCcC-cccc---hhhhhcccCccCEEECcCCcCCCcc
Confidence 4 6788899999999988654 44433 567888 99999999863 2331 1223334568999999987533322
Q ss_pred cccc----ccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcc----cccCCccccccc
Q 004197 549 CIDR----LKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEA----DVVLPNLEALEI 620 (769)
Q Consensus 549 ~~~~----~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~----~~~~~~L~~L~L 620 (769)
+... .....+++|+.|++++|. +..+|+ ..+..+++|++|++++|..- .++...... ...+++|+.|+|
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~-~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPK-ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCT-HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEEC
T ss_pred hhhhcccccccccCCCCCEEECcCCc-cCcCCH-HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEEC
Confidence 2210 001146799999999984 566654 35667999999999997643 555332210 112339999999
Q ss_pred ccccceeccCCCCCCCccC--cCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeee
Q 004197 621 SEINVDKIWHYNHLPIMLP--HFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFV 698 (769)
Q Consensus 621 ~~~~l~~i~~~~~~~~~l~--~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~ 698 (769)
++|+++.++ ..+. .+++|+.|++++| .++.+ +..+.++++|++|++++|+.+..-......+. ....
T Consensus 496 s~N~l~~lp------~~~~~~~l~~L~~L~Ls~N-~l~~i--p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~ 564 (636)
T 4eco_A 496 RFNKLTKLS------DDFRATTLPYLVGIDLSYN-SFSKF--PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITL 564 (636)
T ss_dssp CSSCCCBCC------GGGSTTTCTTCCEEECCSS-CCSSC--CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGG
T ss_pred cCCcCCccC------hhhhhccCCCcCEEECCCC-CCCCc--ChhhhcCCCCCEEECCCCcccccCcccccChH--HHhc
Confidence 999888652 3343 7899999999996 46666 34567899999999976542211000011111 1456
Q ss_pred ecccCccccccCcccccccCCCccccCCCcceEEEecCCCceeec
Q 004197 699 FQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCDKLKIFG 743 (769)
Q Consensus 699 l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~l~ 743 (769)
+++|++|++++|. ++.+|.... ++|++|++++|+ ++.++
T Consensus 565 l~~L~~L~Ls~N~-l~~ip~~~~----~~L~~L~Ls~N~-l~~~~ 603 (636)
T 4eco_A 565 CPSLTQLQIGSND-IRKVNEKIT----PNISVLDIKDNP-NISID 603 (636)
T ss_dssp CSSCCEEECCSSC-CCBCCSCCC----TTCCEEECCSCT-TCEEE
T ss_pred CCCCCEEECCCCc-CCccCHhHh----CcCCEEECcCCC-Ccccc
Confidence 7899999999975 599987632 899999999996 44544
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.4e-28 Score=281.13 Aligned_cols=390 Identities=16% Similarity=0.098 Sum_probs=247.0
Q ss_pred cccccChhhhhccCCCcEEEeecCCCcc------------------cchhhc--cCCCCcEEEccCCcCccccChhhhcC
Q 004197 298 ILGDIDIAIIGKLGNLEILSFWRSDIVH------------------LPKALG--QLTKLRLLDLTDCFHLKVIAPDVISS 357 (769)
Q Consensus 298 ~l~~l~p~~i~~L~~L~~L~l~~~~l~~------------------lp~~i~--~l~~L~~L~l~~~~~l~~~~~~~~~~ 357 (769)
.++.+ |..+++|++|++|++++|.++. +|..++ ++++|++|++++|.....+|.. +++
T Consensus 436 ~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~ 513 (876)
T 4ecn_A 436 RITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYD 513 (876)
T ss_dssp EEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGG
T ss_pred cccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhC
Confidence 34446 6667777777777777777666 677666 7777777777776655666655 677
Q ss_pred CCCccEEEccCCc-ccc-ceeccccccccCCch-hhcCCCCccEEEEEeeCCCCCCc--ccc-cccccEEEEEEcCCccc
Q 004197 358 LIRLEELYMGNCS-IEW-EVERVNSERSNASLD-ELMLLPWLTTIEINIKNDIILPE--GFF-ARKLERFKISIGNESFM 431 (769)
Q Consensus 358 L~~L~~L~l~~~~-~~~-~~~~~~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~--~~~-~~~L~~l~i~~~~~~~~ 431 (769)
+++|++|++++|. +.+ .+|.. -..+. .+..+++|+.|++++|....+|. .+. +++|+.|.+.... +
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~-----i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~---l 585 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKAD-----WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK---V 585 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHH-----HHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC---C
T ss_pred CCCCCEEECcCCCCcccccchHH-----HHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC---c
Confidence 7777777777775 543 33310 00000 23344577777777777666666 443 5666665543221 2
Q ss_pred cccccccccccccccccccCcccccceEEeecccccccccccccccc-ccEEEecccCCcccccccCCCCCCCCCceEEE
Q 004197 432 ASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINK-VEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWV 510 (769)
Q Consensus 432 ~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 510 (769)
..+|. ...+++|+.|+++.+....++..+..+++ |+.|++.++... .++..+.....++|+.|++
T Consensus 586 ~~lp~-------------~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 586 RHLEA-------------FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp CBCCC-------------CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEEC
T ss_pred ccchh-------------hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEEC
Confidence 23431 45678899999999887754444888888 999999998754 5554433334456999999
Q ss_pred ecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhh-------c
Q 004197 511 QNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAK-------C 583 (769)
Q Consensus 511 ~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-------~ 583 (769)
+++.-...+............++|+.|.++++. +..++... ...+++|+.|++++| .+..+|.. ... +
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~--~~~l~~L~~L~Ls~N-~L~~ip~~-~~~~~~~~l~n 726 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTEL--FATGSPISTIILSNN-LMTSIPEN-SLKPKDGNYKN 726 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHH--HHTTCCCSEEECCSC-CCSCCCTT-SSSCTTSCCTT
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHH--HccCCCCCEEECCCC-cCCccChH-Hhccccccccc
Confidence 988632211100000111234589999999864 44444321 235799999999998 45666542 211 3
Q ss_pred CCCCcEEEEccCchhhhhhhcCCcccc--cCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCC-----Ccc
Q 004197 584 LPRLERVAVINCSKMKEIFAIGGEADV--VLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCH-----KLK 656 (769)
Q Consensus 584 l~~L~~L~i~~c~~l~~~~~~~~~~~~--~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~-----~l~ 656 (769)
+++|+.|++++|. +..++. ... .+++|+.|+|++|+++.+ +..+..+++|+.|++++|+ .+.
T Consensus 727 l~~L~~L~Ls~N~-L~~lp~----~l~~~~l~~L~~L~Ls~N~L~~l------p~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 727 TYLLTTIDLRFNK-LTSLSD----DFRATTLPYLSNMDVSYNCFSSF------PTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp GGGCCEEECCSSC-CCCCCG----GGSTTTCTTCCEEECCSSCCSSC------CCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred cCCccEEECCCCC-CccchH----HhhhccCCCcCEEEeCCCCCCcc------chhhhcCCCCCEEECCCCCCccccccc
Confidence 3499999999984 445553 222 689999999999988874 3456689999999998733 233
Q ss_pred eecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccC-CCccc------cCCCcc
Q 004197 657 YIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYP-GMHTL------EWPALK 729 (769)
Q Consensus 657 ~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~-~~~~l------~~~~L~ 729 (769)
... +..+.++++|++|++++| .+..++.. .+++|+.|+|++|+.. .+.. ..... .+..-.
T Consensus 796 ~~i-p~~l~~L~~L~~L~Ls~N-~L~~Ip~~----------l~~~L~~LdLs~N~l~-~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 796 RQW-PTGITTCPSLIQLQIGSN-DIRKVDEK----------LTPQLYILDIADNPNI-SIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp CCC-CTTGGGCSSCCEEECCSS-CCCBCCSC----------CCSSSCEEECCSCTTC-EEECGGGHHHHHTTCCEEECCT
T ss_pred ccC-hHHHhcCCCCCEEECCCC-CCCccCHh----------hcCCCCEEECCCCCCC-ccChHHccccccchheeecCCC
Confidence 222 456788999999999999 55665321 2267999999998743 3322 11111 112223
Q ss_pred eEEEecCCCce
Q 004197 730 FLVVSGCDKLK 740 (769)
Q Consensus 730 ~L~i~~C~~L~ 740 (769)
..+|.+|+.|.
T Consensus 863 ~~~I~gC~~L~ 873 (876)
T 4ecn_A 863 TQDIRGCDALG 873 (876)
T ss_dssp TSEEESCGGGC
T ss_pred ccccCCCCCcc
Confidence 44788898774
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=6.4e-27 Score=267.96 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=130.8
Q ss_pred EEeCCcccccCCccccCcceEEEeecCCCCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcc
Q 004197 199 AVRNKDVWKWPDADALKKYFAIFLKDSIINDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMR 275 (769)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 275 (769)
...+.+++.+|. ..++.+++|++++|.+..++. ..++++|+ |.+.++. ...+| .+.|.++++|++|+|++|.
T Consensus 37 ~c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~---~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 37 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIE---DGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp ECTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEEC---TTTTTTCTTCCEEECTTCC
T ss_pred ECCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcC---hhHhcCCCCCCEEEccCCc
Confidence 344567777875 577899999999999988874 33789999 8887764 44566 6778899999999999999
Q ss_pred cCCCCc-cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcc--cchhhccCCCCcEEEccCCcCccccCh
Q 004197 276 LLSLPS-SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH--LPKALGQLTKLRLLDLTDCFHLKVIAP 352 (769)
Q Consensus 276 i~~lp~-~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~~~ 352 (769)
++.+|. .|+++++|++|++++|.++.+++..|+++++|++|++++|.++. +|..++++++|++|++++|. ++.++.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 190 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC 190 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccc
Confidence 988864 57899999999999999998855678999999999999998874 57788899999999999876 666665
Q ss_pred hhhcCCCCcc----EEEccCCccc
Q 004197 353 DVISSLIRLE----ELYMGNCSIE 372 (769)
Q Consensus 353 ~~~~~L~~L~----~L~l~~~~~~ 372 (769)
+.+..+.+++ .++++.+.+.
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCC
T ss_pred ccccchhhhhhhhhhhhcccCccc
Confidence 4455554443 5566655544
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=9.5e-28 Score=267.23 Aligned_cols=456 Identities=14% Similarity=0.101 Sum_probs=281.4
Q ss_pred EEEEeCCcccccCCccccCcceEEEeecCCCCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecC
Q 004197 197 AFAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTR 273 (769)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~ 273 (769)
.+...+..++.+|. ...+++++|++++|.+..++. ...+++|+ |.+.++...... .+.|.++++|++|++++
T Consensus 4 ~l~ls~n~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 4 LVDRSKNGLIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD----ISVFKFNQELEYLDLSH 78 (520)
T ss_dssp EEECTTSCCSSCCC-SCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE----GGGGTTCTTCCEEECCS
T ss_pred eEecCCCCcccccc-cccccccEEECCCCcccccChhhccccccccEEecCCCccCCcC----hHHhhcccCCCEEecCC
Confidence 35556667777775 455899999999999988863 34899999 999887654433 45678999999999999
Q ss_pred cccCCCCccccccCCccEEEeccccccccC-hhhhhccCCCcEEEeecCCCcccchhhccCCCC--cEEEccCCcC--cc
Q 004197 274 MRLLSLPSSIDLLVNLRTLCLDQSILGDID-IAIIGKLGNLEILSFWRSDIVHLPKALGQLTKL--RLLDLTDCFH--LK 348 (769)
Q Consensus 274 ~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--l~ 348 (769)
|.++.+|.. .+++|++|++++|.++.++ |..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ..
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccc
Confidence 999999877 8999999999999988631 7899999999999999998876 457888888 9999999874 34
Q ss_pred ccChhhhcCCCC-ccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcC
Q 004197 349 VIAPDVISSLIR-LEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGN 427 (769)
Q Consensus 349 ~~~~~~~~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~ 427 (769)
..|.. ++.+.. .-.++++++.....++ -..+..+++|+.|+++++........+
T Consensus 155 ~~~~~-l~~l~~~~l~l~l~~n~~~~~~~----------~~~~~~l~~L~~L~l~~n~~~~~~~~~-------------- 209 (520)
T 2z7x_B 155 EDPEG-LQDFNTESLHIVFPTNKEFHFIL----------DVSVKTVANLELSNIKCVLEDNKCSYF-------------- 209 (520)
T ss_dssp CCTTT-TTTCCEEEEEEECCSSSCCCCCC----------CCCCTTCSEEEECCEEECCSTTTTHHH--------------
T ss_pred ccccc-ccccccceEEEEeccCcchhhhh----------hhhhhcccceeecccccccccccccee--------------
Confidence 44554 666552 3345566665543222 145667888999998887421100000
Q ss_pred CccccccccccccccccccccccCcccccceEEeecccccccccc-c---cccccccEEEecccCCcccccccC---CCC
Q 004197 428 ESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMK-L---QAINKVEYLWLDKLQGVKNVLFDL---DTN 500 (769)
Q Consensus 428 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l---~~~~~L~~L~l~~~~~~~~~~~~~---~~~ 500 (769)
.+.+| ....+++++.+.+..+........ + ...++|++|++.++......+..+ ..+
T Consensus 210 ---~~~~~-------------~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 273 (520)
T 2z7x_B 210 ---LSILA-------------KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273 (520)
T ss_dssp ---HHHHH-------------GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred ---ecchh-------------hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccc
Confidence 00000 122344555555554432221111 1 123467777777665433333321 015
Q ss_pred CCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHH
Q 004197 501 GLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLST 580 (769)
Q Consensus 501 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 580 (769)
.+++|+.+++.++.. .+. .........-++|+.|.++++.- ..... ...+++|++|++++|.--...+. .
T Consensus 274 ~l~~L~~l~l~~n~~--~~p-~~~~~~~~~~~~L~~L~l~~n~l-~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~--~ 343 (520)
T 2z7x_B 274 SLKALSIHQVVSDVF--GFP-QSYIYEIFSNMNIKNFTVSGTRM-VHMLC----PSKISPFLHLDFSNNLLTDTVFE--N 343 (520)
T ss_dssp CCCEEEEEEEEECCC--CSC-THHHHHHHHTCCCSEEEEESSCC-CCCCC----CSSCCCCCEEECCSSCCCTTTTT--T
T ss_pred cCceeEeccccccce--ecc-hhhhhcccccCceeEEEcCCCcc-ccccc----hhhCCcccEEEeECCccChhhhh--h
Confidence 566777777766542 110 00000000113577777776542 22111 14567777777777743322322 4
Q ss_pred hhcCCCCcEEEEccCchhh--hhhhcCCcccccCCccccccccccccee-ccCCCCCCCccCcCCCccEEEEecCCCcce
Q 004197 581 AKCLPRLERVAVINCSKMK--EIFAIGGEADVVLPNLEALEISEINVDK-IWHYNHLPIMLPHFQSLTRLIVWHCHKLKY 657 (769)
Q Consensus 581 ~~~l~~L~~L~i~~c~~l~--~~~~~~~~~~~~~~~L~~L~L~~~~l~~-i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~ 657 (769)
+..+++|+.|++++|..-. .++. .+..+++|+.|++++|.++. ++ ...+..+++|+.|++++|.--..
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~----~~~~l~~L~~L~Ls~N~l~~~l~-----~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAE----MTTQMKSLQQLDISQNSVSYDEK-----KGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHH----HHTTCTTCCEEECCSSCCBCCGG-----GCSCCCCTTCCEEECCSSCCCGG
T ss_pred hccCCCCCEEEccCCccCccccchH----HHhhCCCCCEEECCCCcCCcccc-----cchhccCccCCEEECcCCCCCcc
Confidence 5677777888777765321 2221 23356778888888777665 42 22345667788888877643222
Q ss_pred ecchhhHhhc-ccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCC-CccccCCCcceEEEec
Q 004197 658 IFLASMIRSF-EQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPG-MHTLEWPALKFLVVSG 735 (769)
Q Consensus 658 l~~~~~~~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~-~~~l~~~~L~~L~i~~ 735 (769)
. ...+ ++|++|++++| +++.++.. ...+++|++|++++| .++.+|.. .. .+++|++|++++
T Consensus 415 ~-----~~~l~~~L~~L~Ls~N-~l~~ip~~--------~~~l~~L~~L~L~~N-~l~~l~~~~~~--~l~~L~~L~l~~ 477 (520)
T 2z7x_B 415 I-----FRCLPPRIKVLDLHSN-KIKSIPKQ--------VVKLEALQELNVASN-QLKSVPDGIFD--RLTSLQKIWLHT 477 (520)
T ss_dssp G-----GGSCCTTCCEEECCSS-CCCCCCGG--------GGGCTTCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCS
T ss_pred h-----hhhhcccCCEEECCCC-cccccchh--------hhcCCCCCEEECCCC-cCCccCHHHhc--cCCcccEEECcC
Confidence 2 1222 57788888777 55544321 235667778888775 56677765 32 247778888777
Q ss_pred CCC
Q 004197 736 CDK 738 (769)
Q Consensus 736 C~~ 738 (769)
+|-
T Consensus 478 N~~ 480 (520)
T 2z7x_B 478 NPW 480 (520)
T ss_dssp SCB
T ss_pred CCC
Confidence 653
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.7e-27 Score=265.78 Aligned_cols=439 Identities=15% Similarity=0.137 Sum_probs=235.0
Q ss_pred CcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEcc
Q 004197 264 KKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLT 342 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 342 (769)
++|++|++++|.++.+| ..++++++|++|++++|.++.++|..++++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 56777777777777664 4677777777777777777766566677777777777777777777665 67777777777
Q ss_pred CCcCccccC--hhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCC--CC-CCccccccc
Q 004197 343 DCFHLKVIA--PDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKND--II-LPEGFFARK 417 (769)
Q Consensus 343 ~~~~l~~~~--~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~--~~-~~~~~~~~~ 417 (769)
+|. +..++ .. ++++++|++|++++|.+.. ..+..+..+ +|+.|+++++.. .. .|..+..-.
T Consensus 130 ~N~-l~~l~~p~~-~~~l~~L~~L~L~~n~l~~-----------~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 130 FND-FDVLPVCKE-FGNLTKLTFLGLSAAKFRQ-----------LDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp SSC-CSBCCCCGG-GGGCTTCCEEEEECSBCCT-----------TTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred CCC-ccccCchHh-hcccCcccEEecCCCcccc-----------Cchhhhhhc-eeeEEEeecccccccccCcccccccC
Confidence 765 55443 33 6777777777777665541 122333333 347777777654 22 222222112
Q ss_pred ccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccc--ccc--cc-ccccccccEEEecccCCccc
Q 004197 418 LERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTD--VRS--MK-LQAINKVEYLWLDKLQGVKN 492 (769)
Q Consensus 418 L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~--~~-l~~~~~L~~L~l~~~~~~~~ 492 (769)
.+.+.+..........++. .....+.+|+.++++.+... ... .. +..+++|+.|.+.++.....
T Consensus 196 ~~~l~l~l~~n~~~~~~~~-----------~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVN-----------MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp EEEEEEEECSSSCCCCCCE-----------EEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred cceEEEEecCccchhhhhh-----------hcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 2344444443322222211 00234566777777665311 111 11 45566666666665442221
Q ss_pred cccc-CCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeecccccccc-ccccccc-cccccCCccEEEEcCC
Q 004197 493 VLFD-LDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQ-RICIDRL-KVESFNKLKTIKVENC 569 (769)
Q Consensus 493 ~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~-~~~~~~~-~~~~~~~L~~L~l~~c 569 (769)
.... ......++|++|+++++.....+... ......++|+.|.+.++..-. .++.... .....++|+.|++++|
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~---~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDRE---EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCC---CCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccch---hhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 1000 00112347777777766421111100 000012455555555443221 1110000 0001145777777776
Q ss_pred CCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEE
Q 004197 570 DELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIV 649 (769)
Q Consensus 570 ~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l 649 (769)
... ..+ ....+++|++|+++++..-..++. .+..+++|+.|++++|+++.+.. .+..+..+++|+.|++
T Consensus 342 ~~~-~~~---~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~---~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 342 PFI-HMV---CPPSPSSFTFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRNGLKNFFK---VALMTKNMSSLETLDV 410 (562)
T ss_dssp CCC-CCC---CCSSCCCCCEEECCSSCCCTTTTT----TCCSCSSCCEEECCSSCCCBTTH---HHHTTTTCTTCCEEEC
T ss_pred Ccc-ccc---CccCCCCceEEECCCCccccchhh----hhcccCCCCEEECCCCCcCCccc---chhhhcCCCCCCEEEC
Confidence 432 221 114667777777777654332221 23456777777777776665411 0123456777777777
Q ss_pred ecCCCcce-ecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeee-cccCccccccCcccccccCCCccccCCC
Q 004197 650 WHCHKLKY-IFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVF-QRVTTLTLQDLPELRCLYPGMHTLEWPA 727 (769)
Q Consensus 650 ~~c~~l~~-l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~l~~~~~~l~~~~ 727 (769)
++|. ++. + +...+..+++|++|++++|. ++.... ..+ ++|++|+++++ .++.+|.+... +++
T Consensus 411 ~~N~-l~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~----------~~l~~~L~~L~L~~N-~l~~ip~~~~~--l~~ 474 (562)
T 3a79_B 411 SLNS-LNSHA-YDRTCAWAESILVLNLSSNM-LTGSVF----------RCLPPKVKVLDLHNN-RIMSIPKDVTH--LQA 474 (562)
T ss_dssp TTSC-CBSCC-SSCCCCCCTTCCEEECCSSC-CCGGGG----------SSCCTTCSEEECCSS-CCCCCCTTTTS--SCC
T ss_pred CCCc-CCCcc-ChhhhcCcccCCEEECCCCC-CCcchh----------hhhcCcCCEEECCCC-cCcccChhhcC--CCC
Confidence 7754 443 4 23345566777777777773 322110 112 46777777775 66777766553 377
Q ss_pred cceEEEecCCCceeeccC-CCCcccccccCCCCC
Q 004197 728 LKFLVVSGCDKLKIFGAD-LSQNNEVDQLGIPAQ 760 (769)
Q Consensus 728 L~~L~i~~C~~L~~l~~~-~~~~~~l~~l~i~~~ 760 (769)
|++|+++++ +++.+|.. ...++.|+.+++.++
T Consensus 475 L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 475 LQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCC
Confidence 777777776 46677776 666777777777655
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3.5e-26 Score=256.70 Aligned_cols=456 Identities=16% Similarity=0.153 Sum_probs=277.2
Q ss_pred ceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEEe
Q 004197 217 YFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCL 294 (769)
Q Consensus 217 lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L 294 (769)
.++++++++.+..+|... .++|+ +.+.++.. ..++ .+.|.++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i-~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSI-SELR---MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCC-CCCC---GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECCCCCc-cccC---hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 377888888887777543 26777 77776654 3444 56678999999999999999876 677899999999999
Q ss_pred ccccccccChhhhhccCCCcEEEeecCCCcccc--hhhccCCCCcEEEccCCcCccccChhhhcCCCCc--cEEEccCCc
Q 004197 295 DQSILGDIDIAIIGKLGNLEILSFWRSDIVHLP--KALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRL--EELYMGNCS 370 (769)
Q Consensus 295 ~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L--~~L~l~~~~ 370 (769)
++|.++.+ |.. .+++|++|++++|.+..+| ..++++++|++|++++|. +.... ++.+++| ++|++++|.
T Consensus 108 s~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 108 SHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESS
T ss_pred CCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeeccc
Confidence 99999999 555 8999999999999888764 789999999999999876 44322 4555555 999998887
Q ss_pred c--ccceeccccccccCCchhhcCCCCccEEEE--EeeCCCCCCcccc---cccccEEEEEEcCCccccccccccccccc
Q 004197 371 I--EWEVERVNSERSNASLDELMLLPWLTTIEI--NIKNDIILPEGFF---ARKLERFKISIGNESFMASLPVAKDWFRS 443 (769)
Q Consensus 371 ~--~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l--~~~~~~~~~~~~~---~~~L~~l~i~~~~~~~~~~l~~~~~~~~~ 443 (769)
+ ....+ ..+..+.. +.+.+ ..+.......... .++|+.+.+..... ....++.
T Consensus 181 l~~~~~~~-----------~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~l~~------- 240 (562)
T 3a79_B 181 YHIKGGET-----------ESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE-NCQRLMT------- 240 (562)
T ss_dssp CCCCSSSC-----------CEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST-THHHHHH-------
T ss_pred ccccccCc-----------ccccccCc-ceEEEEecCccchhhhhhhcccccceEEEeccccccc-ccchHHH-------
Confidence 7 42222 33333331 33333 3333222111111 44555554443210 0011110
Q ss_pred cccccccCcccccceEEeecccccccccc----ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcc-e
Q 004197 444 RSHFLINNNRESLRELKLKLDFTDVRSMK----LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFF-C 518 (769)
Q Consensus 444 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~ 518 (769)
.+......+.++.+.+........... ....++|++|++.++......+..+.....++|+.|.+.++..-. .
T Consensus 241 --~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~ 318 (562)
T 3a79_B 241 --FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318 (562)
T ss_dssp --HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCS
T ss_pred --HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceee
Confidence 000123445666666665443222211 123348888888887654344333211112555555555432111 0
Q ss_pred eccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchh
Q 004197 519 IVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKM 598 (769)
Q Consensus 519 i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l 598 (769)
+ ...........++|+.|.+.++.- ..+.. ...+++|+.|+++++.--...+ ..+..+++|+.|+++++. +
T Consensus 319 ~-p~~~~~~~~~~~~L~~L~l~~n~~-~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~-l 389 (562)
T 3a79_B 319 F-SKEALYSVFAEMNIKMLSISDTPF-IHMVC----PPSPSSFTFLNFTQNVFTDSVF--QGCSTLKRLQTLILQRNG-L 389 (562)
T ss_dssp S-CHHHHHHHHHTCCCSEEEEESSCC-CCCCC----CSSCCCCCEEECCSSCCCTTTT--TTCCSCSSCCEEECCSSC-C
T ss_pred c-ChhhhhhhhccCcceEEEccCCCc-ccccC----ccCCCCceEEECCCCccccchh--hhhcccCCCCEEECCCCC-c
Confidence 0 000000111124688888887642 22111 1467889999998875333233 255778899999998864 3
Q ss_pred hhhhhcCCcccccCCccccccccccccee-ccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhc-ccCcEEeEc
Q 004197 599 KEIFAIGGEADVVLPNLEALEISEINVDK-IWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSF-EQLQQLDIV 676 (769)
Q Consensus 599 ~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~l~ 676 (769)
..++... ..+..+++|+.|++++|.++. + +...+..+++|+.|++++|. ++.. ....+ ++|++|+++
T Consensus 390 ~~~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-----~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~l~~~L~~L~L~ 458 (562)
T 3a79_B 390 KNFFKVA-LMTKNMSSLETLDVSLNSLNSHA-----YDRTCAWAESILVLNLSSNM-LTGS----VFRCLPPKVKVLDLH 458 (562)
T ss_dssp CBTTHHH-HTTTTCTTCCEEECTTSCCBSCC-----SSCCCCCCTTCCEEECCSSC-CCGG----GGSSCCTTCSEEECC
T ss_pred CCcccch-hhhcCCCCCCEEECCCCcCCCcc-----ChhhhcCcccCCEEECCCCC-CCcc----hhhhhcCcCCEEECC
Confidence 3221100 023467889999999998776 4 22345678899999998875 3322 22334 589999999
Q ss_pred cccccceeeccccccCCcCeeeecccCccccccCcccccccCC-CccccCCCcceEEEecCCC
Q 004197 677 NCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPG-MHTLEWPALKFLVVSGCDK 738 (769)
Q Consensus 677 ~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~-~~~l~~~~L~~L~i~~C~~ 738 (769)
+| +++.++.. ...+++|++|+++++ .++.+|.+ .. .+++|+.|+++++|-
T Consensus 459 ~N-~l~~ip~~--------~~~l~~L~~L~L~~N-~l~~l~~~~~~--~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 459 NN-RIMSIPKD--------VTHLQALQELNVASN-QLKSVPDGVFD--RLTSLQYIWLHDNPW 509 (562)
T ss_dssp SS-CCCCCCTT--------TTSSCCCSEEECCSS-CCCCCCTTSTT--TCTTCCCEECCSCCB
T ss_pred CC-cCcccChh--------hcCCCCCCEEECCCC-CCCCCCHHHHh--cCCCCCEEEecCCCc
Confidence 88 67665322 225678999999885 67788876 33 348899999988763
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=4.3e-25 Score=241.60 Aligned_cols=345 Identities=18% Similarity=0.175 Sum_probs=203.3
Q ss_pred ccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccE
Q 004197 213 ALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRT 291 (769)
Q Consensus 213 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~ 291 (769)
..+++++|++.++.+..++....+++|+ +.+.++.. ..++ . +.++++|++|++++|.+..++. ++++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l-~~~~---~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL-TDIT---P--LKNLTKLVDILMNNNQIADITP-LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC-CCCG---G--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCcc-CCch---h--hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence 3567889999888877776544566666 55555432 2233 2 4556666666666666655554 566666666
Q ss_pred EEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCcc
Q 004197 292 LCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSI 371 (769)
Q Consensus 292 L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~ 371 (769)
|++++|.++.+ |. ++++++|++|++++|.+..+| .++++++|++|++.++ +..++. ++++++|++|++++|.+
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcC
Confidence 66666666665 32 566666666666666555554 3556666666665431 233332 55666666666655544
Q ss_pred ccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcCCccccccccccccccccccccccC
Q 004197 372 EWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINN 451 (769)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 451 (769)
.. +..+..+++|+.|+++++.....++
T Consensus 190 ~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~---------------------------------------- 216 (466)
T 1o6v_A 190 SD-------------ISVLAKLTNLESLIATNNQISDITP---------------------------------------- 216 (466)
T ss_dssp CC-------------CGGGGGCTTCSEEECCSSCCCCCGG----------------------------------------
T ss_pred CC-------------ChhhccCCCCCEEEecCCccccccc----------------------------------------
Confidence 31 1234555556665555544322211
Q ss_pred cccccceEEeeccccccccccccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccC
Q 004197 452 NRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAF 531 (769)
Q Consensus 452 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f 531 (769)
++.+++|+.|++.++.... .. .+..+++|+.|+++++.- ..+ .....+
T Consensus 217 ---------------------~~~l~~L~~L~l~~n~l~~-~~---~l~~l~~L~~L~l~~n~l-~~~------~~~~~l 264 (466)
T 1o6v_A 217 ---------------------LGILTNLDELSLNGNQLKD-IG---TLASLTNLTDLDLANNQI-SNL------APLSGL 264 (466)
T ss_dssp ---------------------GGGCTTCCEEECCSSCCCC-CG---GGGGCTTCSEEECCSSCC-CCC------GGGTTC
T ss_pred ---------------------ccccCCCCEEECCCCCccc-ch---hhhcCCCCCEEECCCCcc-ccc------hhhhcC
Confidence 2334444555554443211 11 133456666666666531 111 124455
Q ss_pred CccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCccccc
Q 004197 532 PLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVV 611 (769)
Q Consensus 532 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 611 (769)
++|+.|.+.++. ++.++. ...+++|+.|++++|. +..+++ +..+++|+.|++++|.. ..++ ....
T Consensus 265 ~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~l-~~~~-----~~~~ 329 (466)
T 1o6v_A 265 TKLTELKLGANQ-ISNISP----LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNNI-SDIS-----PVSS 329 (466)
T ss_dssp TTCSEEECCSSC-CCCCGG----GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSCC-SCCG-----GGGG
T ss_pred CCCCEEECCCCc-cCcccc----ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCcC-CCch-----hhcc
Confidence 666666666542 232222 4467888888888874 555543 57788889998888753 3322 2346
Q ss_pred CCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccce
Q 004197 612 LPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQE 683 (769)
Q Consensus 612 ~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 683 (769)
+++|+.|++++|.++.+ +.+..+++|+.|++++|. ++.+++ +..+++|++|++++| .+..
T Consensus 330 l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~~~~ 389 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV-------SSLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQ-AWTN 389 (466)
T ss_dssp CTTCCEEECCSSCCCCC-------GGGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCE-EEEC
T ss_pred CccCCEeECCCCccCCc-------hhhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCC-cccC
Confidence 78999999999987765 345688999999999875 555532 678899999999998 4444
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=5.9e-25 Score=240.46 Aligned_cols=348 Identities=20% Similarity=0.216 Sum_probs=218.7
Q ss_pred CCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEcc
Q 004197 263 TKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLT 342 (769)
Q Consensus 263 l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 342 (769)
+++++.|+++++.+..+| .+..+++|++|++++|.++.+ |. ++++++|++|++++|.+..+|. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 345555555555555554 255555555555555555555 33 5555555555555555555544 5555555555555
Q ss_pred CCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEE
Q 004197 343 DCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFK 422 (769)
Q Consensus 343 ~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 422 (769)
+|. +..++. ++++++|++|++++|.+.. +..+..+++|+.|++.. .....+.
T Consensus 121 ~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~-------------~~~~~~l~~L~~L~l~~-~~~~~~~----------- 172 (466)
T 1o6v_A 121 NNQ-ITDIDP--LKNLTNLNRLELSSNTISD-------------ISALSGLTSLQQLSFGN-QVTDLKP----------- 172 (466)
T ss_dssp SSC-CCCCGG--GTTCTTCSEEEEEEEEECC-------------CGGGTTCTTCSEEEEEE-SCCCCGG-----------
T ss_pred CCC-CCCChH--HcCCCCCCEEECCCCccCC-------------ChhhccCCcccEeecCC-cccCchh-----------
Confidence 543 444443 4555555555555554330 12345555555555532 1111111
Q ss_pred EEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCCcccccccCCCCCC
Q 004197 423 ISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDTNGL 502 (769)
Q Consensus 423 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l 502 (769)
...+++|+.|+++.+...... .+..+++|++|++.++......+ .+.+
T Consensus 173 ---------------------------~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~----~~~l 220 (466)
T 1o6v_A 173 ---------------------------LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP----LGIL 220 (466)
T ss_dssp ---------------------------GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG----GGGC
T ss_pred ---------------------------hccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc----cccc
Confidence 112334444444444322211 14567788888888776433222 4568
Q ss_pred CCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhh
Q 004197 503 PQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAK 582 (769)
Q Consensus 503 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 582 (769)
++|+.|+++++. +..+ .....+++|+.|.+.++. +..+.. ...+++|+.|++++|. +..+++ +.
T Consensus 221 ~~L~~L~l~~n~-l~~~------~~l~~l~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~n~-l~~~~~---~~ 284 (466)
T 1o6v_A 221 TNLDELSLNGNQ-LKDI------GTLASLTNLTDLDLANNQ-ISNLAP----LSGLTKLTELKLGANQ-ISNISP---LA 284 (466)
T ss_dssp TTCCEEECCSSC-CCCC------GGGGGCTTCSEEECCSSC-CCCCGG----GTTCTTCSEEECCSSC-CCCCGG---GT
T ss_pred CCCCEEECCCCC-cccc------hhhhcCCCCCEEECCCCc-cccchh----hhcCCCCCEEECCCCc-cCcccc---cc
Confidence 999999999885 2221 245678999999999874 333322 5578999999999984 555544 57
Q ss_pred cCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchh
Q 004197 583 CLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLAS 662 (769)
Q Consensus 583 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 662 (769)
.+++|+.|++++|. +..++ ....+++|+.|++++|+++++ ..+..+++|+.|++++| .++.+ .
T Consensus 285 ~l~~L~~L~L~~n~-l~~~~-----~~~~l~~L~~L~L~~n~l~~~-------~~~~~l~~L~~L~l~~n-~l~~~---~ 347 (466)
T 1o6v_A 285 GLTALTNLELNENQ-LEDIS-----PISNLKNLTYLTLYFNNISDI-------SPVSSLTKLQRLFFYNN-KVSDV---S 347 (466)
T ss_dssp TCTTCSEEECCSSC-CSCCG-----GGGGCTTCSEEECCSSCCSCC-------GGGGGCTTCCEEECCSS-CCCCC---G
T ss_pred CCCccCeEEcCCCc-ccCch-----hhcCCCCCCEEECcCCcCCCc-------hhhccCccCCEeECCCC-ccCCc---h
Confidence 89999999999985 33333 345789999999999988775 22568999999999998 56665 3
Q ss_pred hHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccC
Q 004197 663 MIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYP 718 (769)
Q Consensus 663 ~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 718 (769)
.+.++++|++|++++| .+..+++ ...+++|+.|++++|+ ++.+|.
T Consensus 348 ~l~~l~~L~~L~l~~n-~l~~~~~---------~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 348 SLANLTNINWLSAGHN-QISDLTP---------LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp GGTTCTTCCEEECCSS-CCCBCGG---------GTTCTTCCEEECCCEE-EECCCB
T ss_pred hhccCCCCCEEeCCCC-ccCccch---------hhcCCCCCEEeccCCc-ccCCch
Confidence 5788999999999998 4554422 3457889999999964 555554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.9e-25 Score=244.37 Aligned_cols=113 Identities=21% Similarity=0.273 Sum_probs=67.7
Q ss_pred hhhcCCcccEEEecCcccC-CC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcc-cchh--hccC
Q 004197 259 FFKRTKKLRVLDLTRMRLL-SL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH-LPKA--LGQL 333 (769)
Q Consensus 259 ~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l 333 (769)
.|.++++|++|++++|.+. .+ |..+..+++|++|++++|.++.+.|..++++++|++|++++|.+.. .|.. ++++
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCc
Confidence 3456666666666666654 33 3456666666666666666665545666666666666666666653 3333 6666
Q ss_pred CCCcEEEccCCcCcccc-ChhhhcCCCCccEEEccCCccc
Q 004197 334 TKLRLLDLTDCFHLKVI-APDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 334 ~~L~~L~l~~~~~l~~~-~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
++|++|++++|. +..+ |...++++++|++|++++|.+.
T Consensus 129 ~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 129 TSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred ccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCccc
Confidence 666666666655 3333 3333566666666666666554
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=3.6e-24 Score=245.06 Aligned_cols=483 Identities=17% Similarity=0.125 Sum_probs=292.1
Q ss_pred EEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEecc
Q 004197 219 AIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQ 296 (769)
Q Consensus 219 ~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~ 296 (769)
+.+-++.++..+|... -+.++ |.+.++. ...+| ...|.++++|++|+|++|.|+.+| ..|.++++|++|+|++
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~-i~~l~---~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNP-LRHLG---SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSC-CCEEC---TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCC-CCCCC---HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 3444445567777533 24688 8888765 45666 677899999999999999999885 4689999999999999
Q ss_pred ccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEccCCcCccc--cChhhhcCCCCccEEEccCCcccc
Q 004197 297 SILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCFHLKV--IAPDVISSLIRLEELYMGNCSIEW 373 (769)
Q Consensus 297 ~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~~~~~~~~L~~L~~L~l~~~~~~~ 373 (769)
|.++.+++..|+++++|++|++++|.++.+|. .++++++|++|++++|. +.. +|.. ++.+++|++|++++|.+..
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccc
Confidence 99999966789999999999999999998886 48999999999999986 544 3454 8899999999999998764
Q ss_pred ceeccccccccCCchhhcCCCC-ccEEEEEeeCCCCCCcccc--------------------------cccccEEEEEEc
Q 004197 374 EVERVNSERSNASLDELMLLPW-LTTIEINIKNDIILPEGFF--------------------------ARKLERFKISIG 426 (769)
Q Consensus 374 ~~~~~~~~~~~~~l~~l~~l~~-L~~L~l~~~~~~~~~~~~~--------------------------~~~L~~l~i~~~ 426 (769)
..+ ..+..+..++. +..++++.+....++.... ...++...+...
T Consensus 188 ~~~--------~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 259 (635)
T 4g8a_A 188 IYC--------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 259 (635)
T ss_dssp ECG--------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ccc--------ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccc
Confidence 332 11222222221 1234443333333322211 122222222211
Q ss_pred CCccccccccccccccccccccccCcccccceEEeeccccccccc---c-cccc----------------------cccc
Q 004197 427 NESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSM---K-LQAI----------------------NKVE 480 (769)
Q Consensus 427 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~---~-l~~~----------------------~~L~ 480 (769)
.......+.. ...........+....+.......... . +..+ .+|+
T Consensus 260 ~~~~~~~l~~--------~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~ 331 (635)
T 4g8a_A 260 EFRNEGNLEK--------FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 331 (635)
T ss_dssp CCTTSCCCSC--------CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCS
T ss_pred cccccccccc--------ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhh
Confidence 1100000000 000001111222222222111110000 0 2223 3344
Q ss_pred EEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCC
Q 004197 481 YLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNK 560 (769)
Q Consensus 481 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 560 (769)
.|.+.++.... .....++.|+.+.+.++... .......+++|+.|.+.+... ..............+
T Consensus 332 ~L~l~~~~~~~-----~~~~~l~~L~~l~l~~n~~~-------~~~~~~~l~~L~~L~ls~n~l-~~~~~~~~~~~~~~~ 398 (635)
T 4g8a_A 332 HLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGG-------NAFSEVDLPSLEFLDLSRNGL-SFKGCCSQSDFGTIS 398 (635)
T ss_dssp EEEEESCEESS-----CCCCBCTTCCEEEEESCCSC-------CBCCCCBCTTCCEEECCSSCC-BEEEECCHHHHSCSC
T ss_pred hhhcccccccC-----cCcccchhhhhcccccccCC-------CCcccccccccccchhhcccc-ccccccccchhhhhh
Confidence 44444332211 11123445555555444211 112333456677776665321 111111111234567
Q ss_pred ccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCc
Q 004197 561 LKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPH 640 (769)
Q Consensus 561 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~ 640 (769)
|+.+++..+... ..+. .+..+++|+.+++.++......+.. .+..+++++.+++++|.+..+ .+..+..
T Consensus 399 L~~L~~~~~~~~-~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~l~~l~~l~ls~n~l~~~-----~~~~~~~ 467 (635)
T 4g8a_A 399 LKYLDLSFNGVI-TMSS--NFLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVA-----FNGIFNG 467 (635)
T ss_dssp CCEEECCSCSEE-EECS--CCTTCTTCCEEECTTSEEESTTSSC---TTTTCTTCCEEECTTSCCEEC-----CTTTTTT
T ss_pred hhhhhccccccc-cccc--cccccccccchhhhhcccccccccc---ccccccccccccccccccccc-----ccccccc
Confidence 777777665432 2222 3456788888888776654433221 234678888999999887776 3345567
Q ss_pred CCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccccccCCC
Q 004197 641 FQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRCLYPGM 720 (769)
Q Consensus 641 l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~ 720 (769)
+++|+.|++++|.....+. +..+..+++|++|++++| +++.+++. . ...+++|++|+|+++ .+++++...
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N-~L~~l~~~-~------f~~l~~L~~L~Ls~N-~l~~l~~~~ 537 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQC-QLEQLSPT-A------FNSLSSLQVLNMSHN-NFFSLDTFP 537 (635)
T ss_dssp CTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTS-CCCEECTT-T------TTTCTTCCEEECTTS-CCCBCCCGG
T ss_pred chhhhhhhhhhcccccccC-chhhhhccccCEEECCCC-ccCCcChH-H------HcCCCCCCEEECCCC-cCCCCChhH
Confidence 8999999999987666553 456788999999999999 78776432 1 345688999999995 788887653
Q ss_pred ccccCCCcceEEEecCCCceeec-cCCCCc-ccccccCCCCC
Q 004197 721 HTLEWPALKFLVVSGCDKLKIFG-ADLSQN-NEVDQLGIPAQ 760 (769)
Q Consensus 721 ~~l~~~~L~~L~i~~C~~L~~l~-~~~~~~-~~l~~l~i~~~ 760 (769)
.. .+++|++|+++++. |+.++ .....+ ++|+.+++.++
T Consensus 538 ~~-~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 538 YK-CLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp GT-TCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTC
T ss_pred Hh-CCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCC
Confidence 32 45999999999985 66554 445555 68999988764
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.4e-24 Score=232.18 Aligned_cols=354 Identities=15% Similarity=0.139 Sum_probs=176.4
Q ss_pred ccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccE
Q 004197 213 ALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRT 291 (769)
Q Consensus 213 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~ 291 (769)
..+++++|+++++.+..+|....+++|+ +.+.++.. ..+| ++.+++|++|++++|.++.+| ++.+++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l-~~~~------~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI-TTLD------LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC-SCCC------CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC-CeEc------cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 4577888888888776666433555555 55554432 2222 345555555555555555543 555555555
Q ss_pred EEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCcc
Q 004197 292 LCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSI 371 (769)
Q Consensus 292 L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~ 371 (769)
|++++|.++.+ | ++++++|++|++++|.++.+| ++++++|++|++++|..+..++ ++.+++|++|++++|.+
T Consensus 111 L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 111 LNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp EECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCee-c--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcc
Confidence 55555555555 2 555555555555555555543 4555555555555554344432 44555555555555544
Q ss_pred ccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcCCccccccccccccccccccccccC
Q 004197 372 EWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINN 451 (769)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 451 (769)
.. + .+..+++|+.|+++++....++ ..
T Consensus 183 ~~-------------l-~l~~l~~L~~L~l~~N~l~~~~---------------------------------------l~ 209 (457)
T 3bz5_A 183 TE-------------L-DVSQNKLLNRLNCDTNNITKLD---------------------------------------LN 209 (457)
T ss_dssp CC-------------C-CCTTCTTCCEEECCSSCCSCCC---------------------------------------CT
T ss_pred ce-------------e-ccccCCCCCEEECcCCcCCeec---------------------------------------cc
Confidence 31 0 1344455555555444322210 11
Q ss_pred cccccceEEeeccccccccccccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccC
Q 004197 452 NRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAF 531 (769)
Q Consensus 452 ~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f 531 (769)
.+++|+.|+++.+....++ +..+++|+.|++.++..... +.+.+++|+.|.+.+
T Consensus 210 ~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~-----~~~~l~~L~~L~l~~------------------- 263 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL-----DVSTLSKLTTLHCIQ------------------- 263 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-----CCTTCTTCCEEECTT-------------------
T ss_pred cCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCc-----CHHHCCCCCEEeccC-------------------
Confidence 2334444444444333221 33344444444444332111 122334444443322
Q ss_pred CccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCccccc
Q 004197 532 PLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVV 611 (769)
Q Consensus 532 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 611 (769)
.+|+.|.+.++..+..++ .+.+++|+.|++++|+.+..+|. ..+.|+.|++++
T Consensus 264 n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~----------------- 316 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLLDC-----QAAGITELDLSQ----------------- 316 (457)
T ss_dssp CCCSCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEEEC-----TTCCCSCCCCTT-----------------
T ss_pred CCCCEEECCCCccCCccc-----ccccccCCEEECCCCcccceecc-----CCCcceEechhh-----------------
Confidence 123444444444333332 23456666666666665555532 234444444433
Q ss_pred CCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeecccccc
Q 004197 612 LPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVD 691 (769)
Q Consensus 612 ~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~ 691 (769)
.++|+.|++++|+++.+ .+..+++|+.|+++++ .++.+ ++|..|.++++ .+..
T Consensus 317 ~~~L~~L~L~~N~l~~l--------~l~~l~~L~~L~l~~N-~l~~l---------~~L~~L~l~~n-~l~g-------- 369 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTEL--------DVSHNTKLKSLSCVNA-HIQDF---------SSVGKIPALNN-NFEA-------- 369 (457)
T ss_dssp CTTCCEEECTTCCCSCC--------CCTTCTTCSEEECCSS-CCCBC---------TTGGGSSGGGT-SEEE--------
T ss_pred cccCCEEECCCCccccc--------ccccCCcCcEEECCCC-CCCCc---------cccccccccCC-cEEe--------
Confidence 36677778888777764 1456788888888774 45443 34444444433 2211
Q ss_pred CCcCeeeecccCccccccCcccccccCCC
Q 004197 692 HVTPRFVFQRVTTLTLQDLPELRCLYPGM 720 (769)
Q Consensus 692 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~ 720 (769)
...+..|+.+++++..--..+|...
T Consensus 370 ----~~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 370 ----EGQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp ----EEEEEECCCBCCBTTBEEEECCTTC
T ss_pred ----cceeeecCccccccCcEEEEcChhH
Confidence 1234557777777744334666543
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=3.4e-24 Score=225.24 Aligned_cols=149 Identities=20% Similarity=0.301 Sum_probs=89.9
Q ss_pred cccCcceEEEeecCCCCCCCCccCCCCcEEEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccE
Q 004197 212 DALKKYFAIFLKDSIINDIPEVLESPQLEFLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRT 291 (769)
Q Consensus 212 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lrl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~ 291 (769)
...+++++|+++++.+..++. +..+++|++|++++|.++.+|. +..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~---------------------------~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 92 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG---------------------------IEYLTNLEYLNLNGNQITDISP-LSNLVKLTN 92 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT---------------------------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred hhcccccEEEEeCCccccchh---------------------------hhhcCCccEEEccCCccccchh-hhcCCcCCE
Confidence 345677778877776655543 3456666666666666666554 666666666
Q ss_pred EEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCcc
Q 004197 292 LCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSI 371 (769)
Q Consensus 292 L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~ 371 (769)
|++++|.++.+ | .++++++|++|++++|.+..+|. +.++++|++|++++|.....++. ++.+++|++|++++|.+
T Consensus 93 L~L~~n~i~~~-~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 93 LYIGTNKITDI-S-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV 167 (347)
T ss_dssp EECCSSCCCCC-G-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEccCCcccCc-h-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCc
Confidence 66666666665 3 46666666666666666666654 66666666666666654444333 56666666666666554
Q ss_pred ccceeccccccccCCchhhcCCCCccEEEEEeeCC
Q 004197 372 EWEVERVNSERSNASLDELMLLPWLTTIEINIKND 406 (769)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 406 (769)
.. +..+..+++|+.|+++++..
T Consensus 168 ~~-------------~~~~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 168 KD-------------VTPIANLTDLYSLSLNYNQI 189 (347)
T ss_dssp CC-------------CGGGGGCTTCSEEECTTSCC
T ss_pred CC-------------chhhccCCCCCEEEccCCcc
Confidence 31 11255566666666655543
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.3e-24 Score=237.60 Aligned_cols=136 Identities=21% Similarity=0.274 Sum_probs=105.4
Q ss_pred CCcccEEEecCcccCCC-CccccccCCccEEEecccccc-ccChhhhhccCCCcEEEeecCCCccc-chhhccCCCCcEE
Q 004197 263 TKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQSILG-DIDIAIIGKLGNLEILSFWRSDIVHL-PKALGQLTKLRLL 339 (769)
Q Consensus 263 l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~-~l~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L 339 (769)
.++|++|++++|.++.+ |..++++++|++|++++|.+. .++|..++++++|++|++++|.+..+ |..++++++|++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 37889999999988865 677889999999999999865 66567889999999999999988866 6778899999999
Q ss_pred EccCCcCccc-cC-hhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCC
Q 004197 340 DLTDCFHLKV-IA-PDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIIL 409 (769)
Q Consensus 340 ~l~~~~~l~~-~~-~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 409 (769)
++++|. +.. ++ ...++.+++|++|++++|.+....+. ..+..+++|+.|++++|.....
T Consensus 109 ~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 109 TLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA----------SFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp ECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC----------GGGGGCTTCCEEECTTCCBSCC
T ss_pred eCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcc----------cccCCCCcccEEeCCCCccccc
Confidence 999886 443 22 23377889999999988887643330 2267888888888887765443
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=6.9e-24 Score=222.92 Aligned_cols=305 Identities=19% Similarity=0.199 Sum_probs=212.0
Q ss_pred hhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEE
Q 004197 260 FKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLL 339 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 339 (769)
+..+++|+.|+++++.+..+|. +..+++|++|++++|.++.+ |. ++++++|++|++++|.+..+| .+.++++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 4578999999999999998874 89999999999999999999 55 999999999999999999886 59999999999
Q ss_pred EccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCccccccccc
Q 004197 340 DLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLE 419 (769)
Q Consensus 340 ~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 419 (769)
++++|. +..++. +..+++|++|++++|...... ..+..+++|+.|+++.+....++..
T Consensus 116 ~l~~n~-i~~~~~--~~~l~~L~~L~l~~n~~~~~~------------~~~~~l~~L~~L~l~~~~~~~~~~~------- 173 (347)
T 4fmz_A 116 YLNEDN-ISDISP--LANLTKMYSLNLGANHNLSDL------------SPLSNMTGLNYLTVTESKVKDVTPI------- 173 (347)
T ss_dssp ECTTSC-CCCCGG--GTTCTTCCEEECTTCTTCCCC------------GGGTTCTTCCEEECCSSCCCCCGGG-------
T ss_pred ECcCCc-ccCchh--hccCCceeEEECCCCCCcccc------------cchhhCCCCcEEEecCCCcCCchhh-------
Confidence 999986 777766 889999999999998654222 4588899999999887765443221
Q ss_pred EEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCCcccccccCCC
Q 004197 420 RFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDT 499 (769)
Q Consensus 420 ~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 499 (769)
..+++|+.|++.++.... ... .
T Consensus 174 ------------------------------------------------------~~l~~L~~L~l~~n~l~~-~~~---~ 195 (347)
T 4fmz_A 174 ------------------------------------------------------ANLTDLYSLSLNYNQIED-ISP---L 195 (347)
T ss_dssp ------------------------------------------------------GGCTTCSEEECTTSCCCC-CGG---G
T ss_pred ------------------------------------------------------ccCCCCCEEEccCCcccc-ccc---c
Confidence 123334444443332211 111 2
Q ss_pred CCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchH
Q 004197 500 NGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLS 579 (769)
Q Consensus 500 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 579 (769)
..+++|+.|.+.++.. ..+ .....+++|+.|.+.++. ++.++. ...+++|++|++++| .+..++
T Consensus 196 ~~l~~L~~L~l~~n~l-~~~------~~~~~~~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~n-~l~~~~--- 259 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQI-TDI------TPVANMTRLNSLKIGNNK-ITDLSP----LANLSQLTWLEIGTN-QISDIN--- 259 (347)
T ss_dssp GGCTTCCEEECCSSCC-CCC------GGGGGCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSS-CCCCCG---
T ss_pred cCCCccceeecccCCC-CCC------chhhcCCcCCEEEccCCc-cCCCcc----hhcCCCCCEEECCCC-ccCCCh---
Confidence 3455555555555421 111 123445566666665542 222221 345677777887776 344442
Q ss_pred HhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceec
Q 004197 580 TAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIF 659 (769)
Q Consensus 580 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~ 659 (769)
.+..+++|++|++++|. +..++ ....+++|+.|++++|.++.. .+..+..+++|+.|++++|+ ++.++
T Consensus 260 ~~~~l~~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQ-ISDIS-----VLNNLSQLNSLFLNNNQLGNE-----DMEVIGGLTNLTTLFLSQNH-ITDIR 327 (347)
T ss_dssp GGTTCTTCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSSCCCGG-----GHHHHHTCTTCSEEECCSSS-CCCCG
T ss_pred hHhcCCCcCEEEccCCc-cCCCh-----hhcCCCCCCEEECcCCcCCCc-----ChhHhhccccCCEEEccCCc-ccccc
Confidence 35677888888888773 33332 345678888888888877654 23445678899999999976 66653
Q ss_pred chhhHhhcccCcEEeEcccc
Q 004197 660 LASMIRSFEQLQQLDIVNCR 679 (769)
Q Consensus 660 ~~~~~~~l~~L~~L~l~~c~ 679 (769)
+ +..+++|++|++++|+
T Consensus 328 ~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 328 P---LASLSKMDSADFANQV 344 (347)
T ss_dssp G---GGGCTTCSEESSSCC-
T ss_pred C---hhhhhccceeehhhhc
Confidence 3 6788999999999884
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.3e-23 Score=231.10 Aligned_cols=298 Identities=18% Similarity=0.213 Sum_probs=173.1
Q ss_pred CcccEEEecCcccCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEc
Q 004197 264 KKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDL 341 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 341 (769)
+++++|++++|.++.+ |..+.++++|++|+|++|.++.+.|..++++++|++|++++|.+..+|.. +.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5677888888877765 45677778888888888777776667777788888888888777777754 577778888888
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEE
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERF 421 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l 421 (769)
++|. +..++...+.++++|++|++++|.+....+ ..+..+++|+.|+++.+....++...
T Consensus 112 s~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~~~-------- 171 (477)
T 2id5_A 112 SENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISH-----------RAFSGLNSLEQLTLEKCNLTSIPTEA-------- 171 (477)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECT-----------TSSTTCTTCCEEEEESCCCSSCCHHH--------
T ss_pred CCCc-cccCChhHccccccCCEEECCCCccceeCh-----------hhccCCCCCCEEECCCCcCcccChhH--------
Confidence 7765 555544447777778888777776653222 45666777777777766544332210
Q ss_pred EEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCCcccccccCCCCC
Q 004197 422 KISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDTNG 501 (769)
Q Consensus 422 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 501 (769)
+..+++|+.|++.++........ .+..
T Consensus 172 ---------------------------------------------------l~~l~~L~~L~l~~n~i~~~~~~--~~~~ 198 (477)
T 2id5_A 172 ---------------------------------------------------LSHLHGLIVLRLRHLNINAIRDY--SFKR 198 (477)
T ss_dssp ---------------------------------------------------HTTCTTCCEEEEESCCCCEECTT--CSCS
T ss_pred ---------------------------------------------------hcccCCCcEEeCCCCcCcEeChh--hccc
Confidence 22334444444444332221111 1345
Q ss_pred CCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHh
Q 004197 502 LPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTA 581 (769)
Q Consensus 502 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 581 (769)
+++|+.|++.++..+..+ +.. .....+|+.|++++| .++.+++ ..+
T Consensus 199 l~~L~~L~l~~~~~~~~~-----------------------------~~~---~~~~~~L~~L~l~~n-~l~~~~~-~~~ 244 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTM-----------------------------TPN---CLYGLNLTSLSITHC-NLTAVPY-LAV 244 (477)
T ss_dssp CTTCCEEEEECCTTCCEE-----------------------------CTT---TTTTCCCSEEEEESS-CCCSCCH-HHH
T ss_pred CcccceeeCCCCcccccc-----------------------------Ccc---cccCccccEEECcCC-cccccCH-HHh
Confidence 566666666665443332 111 111235555666555 3444432 244
Q ss_pred hcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecch
Q 004197 582 KCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLA 661 (769)
Q Consensus 582 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 661 (769)
..+++|+.|+++++. +..++.. .+..+++|+.|+|++|+++.+ .+..+..+++|+.|++++| .++.++ +
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N-~l~~~~-~ 313 (477)
T 2id5_A 245 RHLVYLRFLNLSYNP-ISTIEGS---MLHELLRLQEIQLVGGQLAVV-----EPYAFRGLNYLRVLNVSGN-QLTTLE-E 313 (477)
T ss_dssp TTCTTCCEEECCSSC-CCEECTT---SCTTCTTCCEEECCSSCCSEE-----CTTTBTTCTTCCEEECCSS-CCSCCC-G
T ss_pred cCccccCeeECCCCc-CCccChh---hccccccCCEEECCCCccceE-----CHHHhcCcccCCEEECCCC-cCceeC-H
Confidence 556666666666654 2222211 233456666666666666554 3344556666666666664 455542 3
Q ss_pred hhHhhcccCcEEeEcccc
Q 004197 662 SMIRSFEQLQQLDIVNCR 679 (769)
Q Consensus 662 ~~~~~l~~L~~L~l~~c~ 679 (769)
..+..+++|++|++++++
T Consensus 314 ~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp GGBSCGGGCCEEECCSSC
T ss_pred hHcCCCcccCEEEccCCC
Confidence 445566666676666653
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.6e-24 Score=232.86 Aligned_cols=353 Identities=19% Similarity=0.105 Sum_probs=203.9
Q ss_pred hhcCCcccEEEecCcccC-CCCccccccCCc-------------cEEEeccccccccChhhhhccCCCcEEEeecCCCcc
Q 004197 260 FKRTKKLRVLDLTRMRLL-SLPSSIDLLVNL-------------RTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH 325 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L-------------~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~ 325 (769)
++++++|++|++++|.+. .+|.+++.+.+| ++|++++|.++.+ |.. .++|++|++++|.++.
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~~---~~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PEL---PPHLESLVASCNSLTE 105 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CSC---CTTCSEEECCSSCCSS
T ss_pred HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CCC---cCCCCEEEccCCcCCc
Confidence 356666666666666555 456555555543 6666666666555 331 2456666666666655
Q ss_pred cchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeC
Q 004197 326 LPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKN 405 (769)
Q Consensus 326 lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 405 (769)
+|.. +++|++|++++|. +..+|.. .++|++|++++|.+.. + ..++.+++|+.|++++|.
T Consensus 106 lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l~~-l------------p~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 106 LPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQLEK-L------------PELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp CCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCCSS-C------------CCCTTCTTCCEEECCSSC
T ss_pred cccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCCCC-C------------cccCCCCCCCEEECCCCc
Confidence 5532 3556666666553 4443321 1456666666655441 1 135556666666666555
Q ss_pred CCCCCcccccccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEec
Q 004197 406 DIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLD 485 (769)
Q Consensus 406 ~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~ 485 (769)
...+|.. ..+|+.|+++.+.....+ .+..+++|+.|++.
T Consensus 165 l~~lp~~----------------------------------------~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 165 LKKLPDL----------------------------------------PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp CSCCCCC----------------------------------------CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CcccCCC----------------------------------------cccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 4433322 124555555555444322 25667888888887
Q ss_pred ccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEE
Q 004197 486 KLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIK 565 (769)
Q Consensus 486 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 565 (769)
++.... .+. ..++|++|+++++. +..+ .....+++|+.|.++++ .++.++. .+++|+.|+
T Consensus 204 ~N~l~~-l~~-----~~~~L~~L~l~~n~-l~~l------p~~~~l~~L~~L~l~~N-~l~~l~~------~~~~L~~L~ 263 (454)
T 1jl5_A 204 NNSLKK-LPD-----LPLSLESIVAGNNI-LEEL------PELQNLPFLTTIYADNN-LLKTLPD------LPPSLEALN 263 (454)
T ss_dssp SSCCSS-CCC-----CCTTCCEEECCSSC-CSSC------CCCTTCTTCCEEECCSS-CCSSCCS------CCTTCCEEE
T ss_pred CCcCCc-CCC-----CcCcccEEECcCCc-CCcc------cccCCCCCCCEEECCCC-cCCcccc------cccccCEEE
Confidence 765432 221 23689999999884 3333 13557889999999875 3444432 358899999
Q ss_pred EcCCCCCccccchHHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcC-CCc
Q 004197 566 VENCDELSNIFWLSTAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHF-QSL 644 (769)
Q Consensus 566 l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l-~~L 644 (769)
+++|. +..++. .+++|+.|++++|. +..++ ..+++|+.|++++|.++.+. .+ ++|
T Consensus 264 l~~N~-l~~l~~-----~~~~L~~L~ls~N~-l~~l~-------~~~~~L~~L~l~~N~l~~i~----------~~~~~L 319 (454)
T 1jl5_A 264 VRDNY-LTDLPE-----LPQSLTFLDVSENI-FSGLS-------ELPPNLYYLNASSNEIRSLC----------DLPPSL 319 (454)
T ss_dssp CCSSC-CSCCCC-----CCTTCCEEECCSSC-CSEES-------CCCTTCCEEECCSSCCSEEC----------CCCTTC
T ss_pred CCCCc-ccccCc-----ccCcCCEEECcCCc-cCccc-------CcCCcCCEEECcCCcCCccc----------CCcCcC
Confidence 99874 666653 35899999999875 33322 12478999999999887752 22 589
Q ss_pred cEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCcccc--cccCCCcc
Q 004197 645 TRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELR--CLYPGMHT 722 (769)
Q Consensus 645 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~--~l~~~~~~ 722 (769)
+.|++++| .++.++. .+++|++|++++| .++.++. .+++|++|++++++-.. .+|.+...
T Consensus 320 ~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~lp~-----------~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 320 EELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE-----------LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp CEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred CEEECCCC-ccccccc-----cCCcCCEEECCCC-ccccccc-----------hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 99999996 5666632 2689999999988 6665432 25779999999865433 45554433
Q ss_pred cc-----------CCCcceEEEecCCCcee
Q 004197 723 LE-----------WPALKFLVVSGCDKLKI 741 (769)
Q Consensus 723 l~-----------~~~L~~L~i~~C~~L~~ 741 (769)
+. +++|++|++++++ ++.
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~ 410 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETNP-LRE 410 (454)
T ss_dssp EECCC-------------------------
T ss_pred hhhcccccccccccCcCCEEECCCCc-CCc
Confidence 31 2678999999875 443
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=9.8e-24 Score=225.39 Aligned_cols=131 Identities=14% Similarity=0.259 Sum_probs=63.2
Q ss_pred CCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCC
Q 004197 236 SPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNL 313 (769)
Q Consensus 236 ~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L 313 (769)
+++++ +.+.++. ...+| ..+|..+++|++|++++|.++.++ ..++.+++|++|++++|.++.++|..++++++|
T Consensus 44 l~~l~~l~l~~~~-l~~l~---~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKLP---AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCE-ESEEC---THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCc-hhhCC---hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 44455 4443322 33344 444455555555555555555443 245555555555555555554434445555555
Q ss_pred cEEEeecCCCcccchhh-ccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCcc
Q 004197 314 EILSFWRSDIVHLPKAL-GQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSI 371 (769)
Q Consensus 314 ~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~ 371 (769)
++|++++|.+..+|..+ +++++|++|++++|. +..+++..++.+++|++|++++|.+
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcC
Confidence 55555555555554442 455555555555543 3334333344555555555544443
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=7.8e-24 Score=226.15 Aligned_cols=306 Identities=16% Similarity=0.195 Sum_probs=189.6
Q ss_pred cCCcccEEEecCcccCCCCcc-ccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEE
Q 004197 262 RTKKLRVLDLTRMRLLSLPSS-IDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLL 339 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L 339 (769)
.+.++++|+++++.++.+|.. +..+++|++|++++|.++.+++..++++++|++|++++|.+..+|. .++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 567888888888888888765 5788889999998888888866688888889999998888887754 47888889999
Q ss_pred EccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCccccccccc
Q 004197 340 DLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLE 419 (769)
Q Consensus 340 ~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 419 (769)
++++|. +..+|.+.++++++|++|++++|.+....+ ..+..+++|+.|+++.+....++.
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~-------- 182 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIED-----------DTFQATTSLQNLQLSSNRLTHVDL-------- 182 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCT-----------TTTSSCTTCCEEECCSSCCSBCCG--------
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccCh-----------hhccCCCCCCEEECCCCcCCcccc--------
Confidence 888875 778887756888889999888887763322 457788888888888776443321
Q ss_pred EEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCCcccccccCCC
Q 004197 420 RFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDT 499 (769)
Q Consensus 420 ~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 499 (769)
..+++++.+.++.+.... +...
T Consensus 183 -------------------------------~~l~~L~~L~l~~n~l~~----~~~~----------------------- 204 (390)
T 3o6n_A 183 -------------------------------SLIPSLFHANVSYNLLST----LAIP----------------------- 204 (390)
T ss_dssp -------------------------------GGCTTCSEEECCSSCCSE----EECC-----------------------
T ss_pred -------------------------------ccccccceeecccccccc----cCCC-----------------------
Confidence 122233333333322110 1112
Q ss_pred CCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchH
Q 004197 500 NGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLS 579 (769)
Q Consensus 500 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 579 (769)
++|+.|+++++.- ..+ +...+++|+.|.+.++. ++..+ ....+++|++|+++++. +...++ .
T Consensus 205 ---~~L~~L~l~~n~l-~~~-------~~~~~~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~Ls~n~-l~~~~~-~ 266 (390)
T 3o6n_A 205 ---IAVEELDASHNSI-NVV-------RGPVNVELTILKLQHNN-LTDTA----WLLNYPGLVEVDLSYNE-LEKIMY-H 266 (390)
T ss_dssp ---SSCSEEECCSSCC-CEE-------ECCCCSSCCEEECCSSC-CCCCG----GGGGCTTCSEEECCSSC-CCEEES-G
T ss_pred ---CcceEEECCCCee-eec-------cccccccccEEECCCCC-CcccH----HHcCCCCccEEECCCCc-CCCcCh-h
Confidence 2344444443321 111 11223444444444432 12111 13456666777776663 343322 2
Q ss_pred HhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceec
Q 004197 580 TAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIF 659 (769)
Q Consensus 580 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~ 659 (769)
.+..+++|++|++++|. +..++. ....+|+|+.|+|++|+++.+ +..+..+++|+.|++++|+ ++.++
T Consensus 267 ~~~~l~~L~~L~L~~n~-l~~~~~----~~~~l~~L~~L~L~~n~l~~~------~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNR-LVALNL----YGQPIPTLKVLDLSHNHLLHV------ERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp GGTTCSSCCEEECCSSC-CCEEEC----SSSCCTTCCEEECCSSCCCCC------GGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred HccccccCCEEECCCCc-CcccCc----ccCCCCCCCEEECCCCcceec------CccccccCcCCEEECCCCc-cceeC
Confidence 45566777777777653 233322 123467777777777766654 1234466777777777754 55542
Q ss_pred chhhHhhcccCcEEeEcccc
Q 004197 660 LASMIRSFEQLQQLDIVNCR 679 (769)
Q Consensus 660 ~~~~~~~l~~L~~L~l~~c~ 679 (769)
+..+++|++|++++++
T Consensus 335 ----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 335 ----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ----CCTTCCCSEEECCSSC
T ss_pred ----chhhccCCEEEcCCCC
Confidence 4566777788877764
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=5.6e-24 Score=230.32 Aligned_cols=405 Identities=17% Similarity=0.116 Sum_probs=216.6
Q ss_pred cCcceEEEeecCCCCCCCCcc-CCCCcE-EEecCCCCccccCCcchHhhhcCCc-------------ccEEEecCcccCC
Q 004197 214 LKKYFAIFLKDSIINDIPEVL-ESPQLE-FLLISPKNSFVAPNVSENFFKRTKK-------------LRVLDLTRMRLLS 278 (769)
Q Consensus 214 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~-------------Lr~L~L~~~~i~~ 278 (769)
...+|.++++++.++.+|... ++++|+ +.+.++.....+| .. ++++++ +++|+++++.++.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p---~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAP---PG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSC---TT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCC---cc-cccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 467899999999999999655 899999 9888876666677 33 455555 4999999999998
Q ss_pred CCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCC
Q 004197 279 LPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSL 358 (769)
Q Consensus 279 lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L 358 (769)
+|.. .++|++|++++|.++.+ |.. +.+|++|++++|.+..+|.. .++|++|++++|. ++.+| . ++++
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~l-p~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l 152 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNS 152 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTC
T ss_pred CCCC---cCCCCEEEccCCcCCcc-ccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCC
Confidence 8863 47899999999999999 643 48999999999998887642 2799999999986 77788 4 8999
Q ss_pred CCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcCCcccccccccc
Q 004197 359 IRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGNESFMASLPVAK 438 (769)
Q Consensus 359 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~ 438 (769)
++|++|++++|.+.. ++ . ...+|+.|++++|....+|.....++|+.
T Consensus 153 ~~L~~L~l~~N~l~~-lp-----------~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~------------------ 199 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LP-----------D---LPPSLEFIAAGNNQLEELPELQNLPFLTA------------------ 199 (454)
T ss_dssp TTCCEEECCSSCCSC-CC-----------C---CCTTCCEEECCSSCCSSCCCCTTCTTCCE------------------
T ss_pred CCCCEEECCCCcCcc-cC-----------C---CcccccEEECcCCcCCcCccccCCCCCCE------------------
Confidence 999999999998762 22 1 12489999999988776653222444444
Q ss_pred ccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcce
Q 004197 439 DWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFC 518 (769)
Q Consensus 439 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 518 (769)
++++.+.....+ ...++|+.|++.++... ..+. ++.+++|++|+++++. +..
T Consensus 200 --------------------L~l~~N~l~~l~---~~~~~L~~L~l~~n~l~-~lp~---~~~l~~L~~L~l~~N~-l~~ 251 (454)
T 1jl5_A 200 --------------------IYADNNSLKKLP---DLPLSLESIVAGNNILE-ELPE---LQNLPFLTTIYADNNL-LKT 251 (454)
T ss_dssp --------------------EECCSSCCSSCC---CCCTTCCEEECCSSCCS-SCCC---CTTCTTCCEEECCSSC-CSS
T ss_pred --------------------EECCCCcCCcCC---CCcCcccEEECcCCcCC-cccc---cCCCCCCCEEECCCCc-CCc
Confidence 444433322211 11246666666665433 3321 4567777777777663 221
Q ss_pred eccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchh
Q 004197 519 IVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKM 598 (769)
Q Consensus 519 i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l 598 (769)
+ ...+++|+.|.++++. ++.++. .+++|+.|++++|. +..++. ..++|+.|++++|..
T Consensus 252 l--------~~~~~~L~~L~l~~N~-l~~l~~------~~~~L~~L~ls~N~-l~~l~~-----~~~~L~~L~l~~N~l- 309 (454)
T 1jl5_A 252 L--------PDLPPSLEALNVRDNY-LTDLPE------LPQSLTFLDVSENI-FSGLSE-----LPPNLYYLNASSNEI- 309 (454)
T ss_dssp C--------CSCCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSSC-CSEESC-----CCTTCCEEECCSSCC-
T ss_pred c--------cccccccCEEECCCCc-ccccCc------ccCcCCEEECcCCc-cCcccC-----cCCcCCEEECcCCcC-
Confidence 1 1134677777777653 333322 24678888887764 554432 136788888877642
Q ss_pred hhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccc
Q 004197 599 KEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNC 678 (769)
Q Consensus 599 ~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 678 (769)
..++ ..+++|+.|++++|+++.++ . .+++|+.|++++| .++.++. .+++|++|++++|
T Consensus 310 ~~i~-------~~~~~L~~L~Ls~N~l~~lp------~---~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N 367 (454)
T 1jl5_A 310 RSLC-------DLPPSLEELNVSNNKLIELP------A---LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYN 367 (454)
T ss_dssp SEEC-------CCCTTCCEEECCSSCCSCCC------C---CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred Cccc-------CCcCcCCEEECCCCcccccc------c---cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCC
Confidence 2221 11257888888888776641 1 2578888888876 5666642 4678888888877
Q ss_pred cccceeec-cccccCC-------cCeeeecccCccccccCcccccccCCCccccCCCcceEEEecCCCceeeccCCC
Q 004197 679 RGLQEIIS-EDRVDHV-------TPRFVFQRVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCDKLKIFGADLS 747 (769)
Q Consensus 679 ~~l~~i~~-~~~~~~~-------~~~~~l~~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~l~~~~~ 747 (769)
.++.++. ...+... .....+++|+.|++++++ ++.++. -+++|+.|.+.+|.--...+....
T Consensus 368 -~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~-----iP~sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 368 -PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPD-----IPESVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp -CCSSCCCCCTTCCEEECCC---------------------------------------------------------
T ss_pred -CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCcccc-----chhhHhheeCcCcccCCccccCHH
Confidence 4444211 0111100 000123789999999954 554432 126788888888865555554443
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.8e-23 Score=224.95 Aligned_cols=308 Identities=16% Similarity=0.119 Sum_probs=152.0
Q ss_pred hhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEE
Q 004197 260 FKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLL 339 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 339 (769)
+.++++|++|++++|.++.+| .++.+++|++|++++|.++.+ | ++.+++|++|++++|.++.+| ++++++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 345566666666666666555 456666666666666666655 3 556666666666666665554 5566666666
Q ss_pred EccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeC-CCCCCcccccccc
Q 004197 340 DLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKN-DIILPEGFFARKL 418 (769)
Q Consensus 340 ~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L 418 (769)
++++|. ++.+| ++.+++|++|++++|.+.. -.++.+++|+.|+++.|. .+.+
T Consensus 112 ~L~~N~-l~~l~---~~~l~~L~~L~l~~N~l~~--------------l~l~~l~~L~~L~l~~n~~~~~~--------- 164 (457)
T 3bz5_A 112 NCDTNK-LTKLD---VSQNPLLTYLNCARNTLTE--------------IDVSHNTQLTELDCHLNKKITKL--------- 164 (457)
T ss_dssp ECCSSC-CSCCC---CTTCTTCCEEECTTSCCSC--------------CCCTTCTTCCEEECTTCSCCCCC---------
T ss_pred ECCCCc-CCeec---CCCCCcCCEEECCCCccce--------------eccccCCcCCEEECCCCCccccc---------
Confidence 666654 44443 4556666666666555441 024455555555555442 1111
Q ss_pred cEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCCcccccccCC
Q 004197 419 ERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLD 498 (769)
Q Consensus 419 ~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 498 (769)
+ ...+++|+.|+++.+.....+ +..+++|+.|.+.++..... .
T Consensus 165 ----------------~--------------~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-----~ 207 (457)
T 3bz5_A 165 ----------------D--------------VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-----D 207 (457)
T ss_dssp ----------------C--------------CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC-----C
T ss_pred ----------------c--------------cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee-----c
Confidence 0 112233333333333322211 33344555555544432211 1
Q ss_pred CCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCccccch
Q 004197 499 TNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWL 578 (769)
Q Consensus 499 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 578 (769)
++.+++|+.|+++++.- ..+ +...+++|+.|.++++ .++.++ ...+++|+.|++++
T Consensus 208 l~~l~~L~~L~Ls~N~l-~~i-------p~~~l~~L~~L~l~~N-~l~~~~-----~~~l~~L~~L~l~~---------- 263 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKL-TEI-------DVTPLTQLTYFDCSVN-PLTELD-----VSTLSKLTTLHCIQ---------- 263 (457)
T ss_dssp CTTCTTCSEEECCSSCC-SCC-------CCTTCTTCSEEECCSS-CCSCCC-----CTTCTTCCEEECTT----------
T ss_pred cccCCCCCEEECcCCcc-ccc-------CccccCCCCEEEeeCC-cCCCcC-----HHHCCCCCEEeccC----------
Confidence 44455666666655531 111 1334455555555543 122221 22345555554432
Q ss_pred HHhhcCCCCcEEEEccCchhhhhhhcCCcccccCCcccccccccc-cceeccCCCCC--CCccCcCCCccEEEEecCCCc
Q 004197 579 STAKCLPRLERVAVINCSKMKEIFAIGGEADVVLPNLEALEISEI-NVDKIWHYNHL--PIMLPHFQSLTRLIVWHCHKL 655 (769)
Q Consensus 579 ~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~L~~L~L~~~-~l~~i~~~~~~--~~~l~~l~~L~~L~l~~c~~l 655 (769)
.+|+.|++++|..+..++ ...+++|+.|++++| .+..++..... .-.+..+++|+.|++++| ++
T Consensus 264 ------n~L~~L~l~~n~~~~~~~------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l 330 (457)
T 3bz5_A 264 ------TDLLEIDLTHNTQLIYFQ------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-EL 330 (457)
T ss_dssp ------CCCSCCCCTTCTTCCEEE------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CC
T ss_pred ------CCCCEEECCCCccCCccc------ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cc
Confidence 234444555555444333 123567777777777 44444321100 002345566777776664 45
Q ss_pred ceecchhhHhhcccCcEEeEccc
Q 004197 656 KYIFLASMIRSFEQLQQLDIVNC 678 (769)
Q Consensus 656 ~~l~~~~~~~~l~~L~~L~l~~c 678 (769)
+.++ +.++++|+.|+++++
T Consensus 331 ~~l~----l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 331 TELD----VSHNTKLKSLSCVNA 349 (457)
T ss_dssp SCCC----CTTCTTCSEEECCSS
T ss_pred cccc----cccCCcCcEEECCCC
Confidence 5441 456677777777765
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=5.4e-23 Score=226.04 Aligned_cols=174 Identities=24% Similarity=0.261 Sum_probs=144.4
Q ss_pred eEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEEec
Q 004197 218 FAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLD 295 (769)
Q Consensus 218 r~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 295 (769)
+.++.+++.+..+|... .++++ |.+.++... .++ .+.|.++++|++|+|++|.++.+ |..++++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~~~---~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIK-TLN---QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCC-EEC---TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccc-eEC---HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 56777777888888643 35788 888876543 444 46688999999999999999976 7889999999999999
Q ss_pred cccccccChhhhhccCCCcEEEeecCCCccc-chhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccc
Q 004197 296 QSILGDIDIAIIGKLGNLEILSFWRSDIVHL-PKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWE 374 (769)
Q Consensus 296 ~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~ 374 (769)
+|.++.+++..++++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++.+++|++|++++|.+...
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCccc
Confidence 9999999556789999999999999999866 5678999999999999986 6667665599999999999999987633
Q ss_pred eeccccccccCCchhhcCCCCccEEEEEeeCCCC
Q 004197 375 VERVNSERSNASLDELMLLPWLTTIEINIKNDII 408 (769)
Q Consensus 375 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 408 (769)
.+ ..+..+++|+.|+++.+....
T Consensus 168 ~~-----------~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 168 PT-----------EALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CH-----------HHHTTCTTCCEEEEESCCCCE
T ss_pred Ch-----------hHhcccCCCcEEeCCCCcCcE
Confidence 22 568899999999999876543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.4e-23 Score=231.90 Aligned_cols=152 Identities=14% Similarity=0.256 Sum_probs=120.1
Q ss_pred CCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCC
Q 004197 235 ESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGN 312 (769)
Q Consensus 235 ~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~ 312 (769)
.+++++ +.+.++ ....+| ..+|.++++|++|++++|.++.+| ..++.+++|++|+|++|.++.++|..++++++
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLP---AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSC-EESEEC---THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCC-CCCCcC---HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 455666 554433 345566 777889999999999999998765 48899999999999999999886777899999
Q ss_pred CcEEEeecCCCcccchh-hccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhc
Q 004197 313 LEILSFWRSDIVHLPKA-LGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELM 391 (769)
Q Consensus 313 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 391 (769)
|++|++++|.+..+|.. ++++++|++|++++|. +..+++..++.+++|++|++++|.+.. ..++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~ 189 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH--------------VDLS 189 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB--------------CCGG
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC--------------cChh
Confidence 99999999999988876 4889999999999986 666766558899999999998887651 1345
Q ss_pred CCCCccEEEEEeeC
Q 004197 392 LLPWLTTIEINIKN 405 (769)
Q Consensus 392 ~l~~L~~L~l~~~~ 405 (769)
.+++|+.|+++++.
T Consensus 190 ~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 190 LIPSLFHANVSYNL 203 (597)
T ss_dssp GCTTCSEEECCSSC
T ss_pred hhhhhhhhhcccCc
Confidence 56778888777654
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=7.4e-23 Score=230.78 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=116.5
Q ss_pred cCCcccEEEecCcccCCCCcc-ccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEE
Q 004197 262 RTKKLRVLDLTRMRLLSLPSS-IDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLL 339 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L 339 (769)
.+.++++|+++++.+..+|.. ++.+++|++|++++|.++.++|..++++++|++|++++|.+..+|.. ++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 578999999999999998865 68899999999999999998677999999999999999999988754 6999999999
Q ss_pred EccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCC
Q 004197 340 DLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDI 407 (769)
Q Consensus 340 ~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 407 (769)
++++|. +..+|...++++++|++|++++|.+....+ ..++.+++|+.|++++|...
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIED-----------DTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCT-----------TTTTTCTTCCEEECTTSCCS
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCCh-----------hhhhcCCcCcEEECcCCCCC
Confidence 999986 888998867999999999999998874433 56788889999988876543
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=9.7e-24 Score=239.12 Aligned_cols=386 Identities=13% Similarity=0.052 Sum_probs=192.9
Q ss_pred hcCCcccEEEecCcccCC-CCcccccc--CCccEEEecccc-cc--ccChhhhhccCCCcEEEeecCCCcc-----cchh
Q 004197 261 KRTKKLRVLDLTRMRLLS-LPSSIDLL--VNLRTLCLDQSI-LG--DIDIAIIGKLGNLEILSFWRSDIVH-----LPKA 329 (769)
Q Consensus 261 ~~l~~Lr~L~L~~~~i~~-lp~~i~~l--~~L~~L~L~~~~-l~--~l~p~~i~~L~~L~~L~l~~~~l~~-----lp~~ 329 (769)
..+++|++|+|+++.++. .+..++.. .+|++|++++|. +. .+ +..+.++++|++|++++|.+.. ++..
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHH-HHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHH-HHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 366777777777776552 23344442 337777777665 22 23 3334466777777777775432 3334
Q ss_pred hccCCCCcEEEccCCcCcc-----ccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEee
Q 004197 330 LGQLTKLRLLDLTDCFHLK-----VIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIK 404 (769)
Q Consensus 330 i~~l~~L~~L~l~~~~~l~-----~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~ 404 (769)
...+++|++|++++|. +. .++.- +.++++|++|++++|.+.. ++ ..+..+++|+.|++..+
T Consensus 188 ~~~~~~L~~L~L~~n~-~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~-l~-----------~~~~~~~~L~~L~l~~~ 253 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTE-FAKISPKDLETI-ARNCRSLVSVKVGDFEILE-LV-----------GFFKAAANLEEFCGGSL 253 (592)
T ss_dssp HHHCCCCCEEECTTCC-CSSCCHHHHHHH-HHHCTTCCEEECSSCBGGG-GH-----------HHHHHCTTCCEEEECBC
T ss_pred HhcCCCccEEEeeccC-CCccCHHHHHHH-HhhCCCCcEEeccCccHHH-HH-----------HHHhhhhHHHhhccccc
Confidence 4566777777776654 32 22222 4566777777776665441 11 45566667777766543
Q ss_pred CCCCCCcccccccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEe
Q 004197 405 NDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWL 484 (769)
Q Consensus 405 ~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l 484 (769)
....... ..+.....+.+|+.+.+........+..+..+++|++|++
T Consensus 254 ~~~~~~~---------------------------------~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~L 300 (592)
T 3ogk_B 254 NEDIGMP---------------------------------EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300 (592)
T ss_dssp CCCTTCT---------------------------------TSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEE
T ss_pred ccccchH---------------------------------HHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEec
Confidence 2110000 0001133455677777665432222222567778888888
Q ss_pred cccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccc----------ccccccccccccc
Q 004197 485 DKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHN----------LINMQRICIDRLK 554 (769)
Q Consensus 485 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~----------~~~l~~~~~~~~~ 554 (769)
.++......... ....+++|+.|++.++-. +.........+++|++|.+.+ |..++.......
T Consensus 301 s~~~l~~~~~~~-~~~~~~~L~~L~L~~~~~-----~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l- 373 (592)
T 3ogk_B 301 LYALLETEDHCT-LIQKCPNLEVLETRNVIG-----DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL- 373 (592)
T ss_dssp TTCCCCHHHHHH-HHTTCTTCCEEEEEGGGH-----HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-
T ss_pred CCCcCCHHHHHH-HHHhCcCCCEEeccCccC-----HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-
Confidence 877622111111 135677888888873311 000001223467777777774 544443211100
Q ss_pred ccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEcc---CchhhhhhhcC--CcccccCCcccccccccc-c-cee
Q 004197 555 VESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVIN---CSKMKEIFAIG--GEADVVLPNLEALEISEI-N-VDK 627 (769)
Q Consensus 555 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~---c~~l~~~~~~~--~~~~~~~~~L~~L~L~~~-~-l~~ 627 (769)
...+++|+.|.+ .|..+...........+++|++|++.+ |..+...+... ......+++|+.|+|++| + ++.
T Consensus 374 ~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 374 AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 224677777777 445555432222223467777777763 33443211000 001223567777777654 2 322
Q ss_pred ccCCCCCCCccCcCCCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccceeeccccccCCcCeeeecccCcccc
Q 004197 628 IWHYNHLPIMLPHFQSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTL 707 (769)
Q Consensus 628 i~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l 707 (769)
.... .....+++|+.|++++|. ++.......+.++++|++|++++|+ ++. .+.... ...+++|++|++
T Consensus 453 ~~~~----~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~----~~~~~~--~~~l~~L~~L~l 520 (592)
T 3ogk_B 453 LGLS----YIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSE----RAIAAA--VTKLPSLRYLWV 520 (592)
T ss_dssp HHHH----HHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBH----HHHHHH--HHHCSSCCEEEE
T ss_pred HHHH----HHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcH----HHHHHH--HHhcCccCeeEC
Confidence 1000 001135667777776654 4332223345566777777777774 322 111111 223566777777
Q ss_pred ccCccccc
Q 004197 708 QDLPELRC 715 (769)
Q Consensus 708 ~~c~~L~~ 715 (769)
++|+ ++.
T Consensus 521 s~n~-it~ 527 (592)
T 3ogk_B 521 QGYR-ASM 527 (592)
T ss_dssp ESCB-CCT
T ss_pred cCCc-CCH
Confidence 7765 443
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.9e-21 Score=201.37 Aligned_cols=109 Identities=23% Similarity=0.373 Sum_probs=93.7
Q ss_pred cCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEc
Q 004197 262 RTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDL 341 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 341 (769)
...++++|+++++.++.+|..++++++|++|++++|.++.+ |..++++++|++|++++|.+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCC-CSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccch-hHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 46889999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred cCCcCccccChhhhcC---------CCCccEEEccCCccc
Q 004197 342 TDCFHLKVIAPDVISS---------LIRLEELYMGNCSIE 372 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~---------L~~L~~L~l~~~~~~ 372 (769)
++|.....+|.. ++. +++|++|++++|.+.
T Consensus 158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC
Confidence 998878888876 443 555555555554443
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=1.4e-22 Score=229.67 Aligned_cols=403 Identities=15% Similarity=0.128 Sum_probs=261.5
Q ss_pred cCcceEEEeecCCC----CCCCC------------cc-CCCCcE-EEecCCCCccccCCcchHhhhc-CCc-ccEEEecC
Q 004197 214 LKKYFAIFLKDSII----NDIPE------------VL-ESPQLE-FLLISPKNSFVAPNVSENFFKR-TKK-LRVLDLTR 273 (769)
Q Consensus 214 ~~~lr~L~l~~~~~----~~l~~------------~~-~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~-l~~-Lr~L~L~~ 273 (769)
.+++++|++.++.. +.+|. .. .+++|+ |.+.++......+ ..+.. ++. |++|++++
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~----~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDL----DRLAKARADDLETLKLDK 147 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH----HHHHHHHGGGCCEEEEES
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHH----HHHHHhccccCcEEECcC
Confidence 35688888876432 11111 11 578999 9998774333222 22333 444 99999998
Q ss_pred cc-cC--CCCccccccCCccEEEeccccccccC----hhhhhccCCCcEEEeecCCCc-----ccchhhccCCCCcEEEc
Q 004197 274 MR-LL--SLPSSIDLLVNLRTLCLDQSILGDID----IAIIGKLGNLEILSFWRSDIV-----HLPKALGQLTKLRLLDL 341 (769)
Q Consensus 274 ~~-i~--~lp~~i~~l~~L~~L~L~~~~l~~l~----p~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l 341 (769)
|. +. .++..+..+++|++|+|++|.+...+ +....++++|++|++++|.+. .++..+.++++|++|++
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence 86 32 34444568999999999999875431 456678999999999999775 45666788999999999
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEE
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERF 421 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l 421 (769)
.+|. +..++.. ++++++|++|+++...... ........+..+++|+.|++.......+|..
T Consensus 228 ~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~~--------~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~--------- 288 (592)
T 3ogk_B 228 GDFE-ILELVGF-FKAAANLEEFCGGSLNEDI--------GMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL--------- 288 (592)
T ss_dssp SSCB-GGGGHHH-HHHCTTCCEEEECBCCCCT--------TCTTSSSCCCCCTTCCEEEETTCCTTTGGGG---------
T ss_pred cCcc-HHHHHHH-HhhhhHHHhhccccccccc--------chHHHHHHhhccccccccCccccchhHHHHH---------
Confidence 9986 6667765 8999999999987532221 1123335677888899988865443333332
Q ss_pred EEEEcCCccccccccccccccccccccccCcccccceEEeecccccccccc--ccccccccEEEecccCCcccccccCCC
Q 004197 422 KISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMK--LQAINKVEYLWLDKLQGVKNVLFDLDT 499 (769)
Q Consensus 422 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~ 499 (769)
...+++|+.|+++.+........ +..+++|+.|++.++......... .
T Consensus 289 ----------------------------~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~--~ 338 (592)
T 3ogk_B 289 ----------------------------FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL--A 338 (592)
T ss_dssp ----------------------------GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH--H
T ss_pred ----------------------------HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHH--H
Confidence 22456677777776664333332 477888999988743222222111 3
Q ss_pred CCCCCCceEEEec----------CCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEc--
Q 004197 500 NGLPQLKLLWVQN----------NPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVE-- 567 (769)
Q Consensus 500 ~~l~~L~~L~l~~----------~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~-- 567 (769)
..+++|++|++.+ |..+... ........+++|++|.+ .+.+++....... ...+++|+.|+++
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~---~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l-~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQR---GLIALAQGCQELEYMAV-YVSDITNESLESI-GTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHH---HHHHHHHHCTTCSEEEE-EESCCCHHHHHHH-HHHCCSCCEEEEEEC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHH---HHHHHHhhCccCeEEEe-ecCCccHHHHHHH-HhhCCCCcEEEEeec
Confidence 4578899999995 5443321 00012345789999998 4555544322111 2248899999998
Q ss_pred -CCCCCccccch----HHhhcCCCCcEEEEccCch-hhhhhhcCCcccccCCcccccccccccceeccCCCCCCCccCcC
Q 004197 568 -NCDELSNIFWL----STAKCLPRLERVAVINCSK-MKEIFAIGGEADVVLPNLEALEISEINVDKIWHYNHLPIMLPHF 641 (769)
Q Consensus 568 -~c~~l~~l~~~----~~~~~l~~L~~L~i~~c~~-l~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i~~~~~~~~~l~~l 641 (769)
+|+.++..|.. ..+..+++|++|+++.|.. +....... -...+++|+.|+|++|++++.. .+..+..+
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~----~~~~~~~~ 487 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY--IGQYSPNVRWMLLGYVGESDEG----LMEFSRGC 487 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH--HHHSCTTCCEEEECSCCSSHHH----HHHHHTCC
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH--HHHhCccceEeeccCCCCCHHH----HHHHHhcC
Confidence 46677765321 2356799999999988764 22111100 0124789999999999876420 01123468
Q ss_pred CCccEEEEecCCCcceecchhhHhhcccCcEEeEccccccc
Q 004197 642 QSLTRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCRGLQ 682 (769)
Q Consensus 642 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 682 (769)
++|+.|+|++|+ ++.-........+++|++|++++|+ ++
T Consensus 488 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 488 PNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp TTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CC
T ss_pred cccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CC
Confidence 999999999998 6543234556789999999999996 44
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.3e-20 Score=196.33 Aligned_cols=125 Identities=22% Similarity=0.255 Sum_probs=91.6
Q ss_pred cccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCccc-chhhccCCCCcEEEccC
Q 004197 265 KLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHL-PKALGQLTKLRLLDLTD 343 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~ 343 (769)
++++++++++.++.+|..+. .+|++|++++|.++.++|..++++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 67888888888888877664 5788888888888877566788888888888888887766 56778888888888887
Q ss_pred CcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCC
Q 004197 344 CFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKND 406 (769)
Q Consensus 344 ~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 406 (769)
|. +..+|.. +. ++|++|++++|.+....+ ..+..+++|+.|+++++..
T Consensus 112 n~-l~~l~~~-~~--~~L~~L~l~~n~i~~~~~-----------~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 112 NH-LVEIPPN-LP--SSLVELRIHDNRIRKVPK-----------GVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp SC-CCSCCSS-CC--TTCCEEECCSSCCCCCCS-----------GGGSSCSSCCEEECCSCCC
T ss_pred Cc-CCccCcc-cc--ccCCEEECCCCccCccCH-----------hHhCCCccCCEEECCCCcc
Confidence 65 6677765 33 778888887776652222 3466777777777766543
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=6.9e-20 Score=190.68 Aligned_cols=136 Identities=19% Similarity=0.248 Sum_probs=104.2
Q ss_pred CcccEEEecCcccCCCCc-cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEcc
Q 004197 264 KKLRVLDLTRMRLLSLPS-SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLT 342 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 342 (769)
++|++|++++|.++.++. .++++++|++|++++|.++.+.|..++++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 578888888888887754 68888888888888888887767788888888888888888888887665 788888888
Q ss_pred CCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCc
Q 004197 343 DCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPE 411 (769)
Q Consensus 343 ~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 411 (769)
+|. +..++...++++++|++|++++|.+... ......+..+++|+.|+++.+....+|.
T Consensus 130 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 130 ENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS---------GIENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp SSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG---------GBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred CCc-ccccCHhHhcCCccccEEECCCCcCCcc---------CcChhhccCCCCcCEEECCCCccccCCc
Confidence 875 6777776678888888888888776411 1122567778888888888776655544
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.2e-20 Score=193.26 Aligned_cols=136 Identities=21% Similarity=0.243 Sum_probs=106.5
Q ss_pred CCcccEEEecCcccCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEc
Q 004197 263 TKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDL 341 (769)
Q Consensus 263 l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 341 (769)
.++|++|++++|.++.+ |..++++++|++|++++|.++.+.|..++++++|++|++++|.+..+|..+. ++|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 36789999999988876 4578899999999999999888767889999999999999998888887765 88999999
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCc
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPE 411 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 411 (769)
++|. +..++...++++++|++|++++|.+... ......+..+ +|+.|+++.+....+|.
T Consensus 131 ~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l-~L~~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 131 HDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS---------GFEPGAFDGL-KLNYLRISEAKLTGIPK 189 (332)
T ss_dssp CSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG---------GSCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred CCCc-cCccCHhHhCCCccCCEEECCCCccccC---------CCCcccccCC-ccCEEECcCCCCCccCc
Confidence 8876 7777776688899999999988876510 1111445555 78888888776655544
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.5e-20 Score=193.51 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=73.2
Q ss_pred CcceEEEeecCCCC---CCCCcc-CCCCcE-EEecC-CCCccccCCcchHhhhcCCcccEEEecCcccC-CCCccccccC
Q 004197 215 KKYFAIFLKDSIIN---DIPEVL-ESPQLE-FLLIS-PKNSFVAPNVSENFFKRTKKLRVLDLTRMRLL-SLPSSIDLLV 287 (769)
Q Consensus 215 ~~lr~L~l~~~~~~---~l~~~~-~~~~Lr-l~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~ 287 (769)
.++++|+++++.+. .+|... ++++|+ +.+.+ +.....+| . .|.++++|++|++++|.++ .+|..+++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p---~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP---P-AIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC---G-GGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC---h-hHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 45667777766664 244322 455555 55442 33333333 2 2345555555555555554 4444555555
Q ss_pred CccEEEecccccc-ccChhhhhccCCCcEEEeecCCCc-ccchhhccCC-CCcEEEccCCcCccccChhhhcCCCCccEE
Q 004197 288 NLRTLCLDQSILG-DIDIAIIGKLGNLEILSFWRSDIV-HLPKALGQLT-KLRLLDLTDCFHLKVIAPDVISSLIRLEEL 364 (769)
Q Consensus 288 ~L~~L~L~~~~l~-~l~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L 364 (769)
+|++|++++|.++ .+ |..++++++|++|++++|.+. .+|..+++++ +|++|++++|.....+|.. ++.++ |++|
T Consensus 126 ~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L 202 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTL-PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFV 202 (313)
T ss_dssp TCCEEECCSSEEESCC-CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEE
T ss_pred CCCEEeCCCCccCCcC-ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEE
Confidence 5555555555544 33 445555555555555555544 4455555554 5555555554422233333 44444 5555
Q ss_pred EccCCccc
Q 004197 365 YMGNCSIE 372 (769)
Q Consensus 365 ~l~~~~~~ 372 (769)
++++|.+.
T Consensus 203 ~Ls~N~l~ 210 (313)
T 1ogq_A 203 DLSRNMLE 210 (313)
T ss_dssp ECCSSEEE
T ss_pred ECcCCccc
Confidence 55554443
No 48
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=9.2e-22 Score=222.99 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=53.4
Q ss_pred hhcCCcccEEEecCcccCC-CCcccc-ccCCccEEEeccc-cccc--cChhhhhccCCCcEEEeecCCCcc-----cchh
Q 004197 260 FKRTKKLRVLDLTRMRLLS-LPSSID-LLVNLRTLCLDQS-ILGD--IDIAIIGKLGNLEILSFWRSDIVH-----LPKA 329 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~-lp~~i~-~l~~L~~L~L~~~-~l~~--l~p~~i~~L~~L~~L~l~~~~l~~-----lp~~ 329 (769)
+..+++|++|+++++.++. .+..+. .+++|++|++++| .++. + +..+.++++|++|++++|.+.. ++..
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL-AAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHH-HHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHH-HHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 3455666666666665542 223333 4566666666666 2443 4 3444456666666666654332 2222
Q ss_pred hccCCCCcEEEccCCcCccccChh----hhcCCCCccEEEccCC
Q 004197 330 LGQLTKLRLLDLTDCFHLKVIAPD----VISSLIRLEELYMGNC 369 (769)
Q Consensus 330 i~~l~~L~~L~l~~~~~l~~~~~~----~~~~L~~L~~L~l~~~ 369 (769)
...+++|++|++++|. ..++.. .+.++++|++|++++|
T Consensus 180 ~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 2345566666666553 111111 1233466666666655
No 49
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=4.3e-22 Score=225.71 Aligned_cols=404 Identities=18% Similarity=0.128 Sum_probs=209.1
Q ss_pred cCcceEEEeecCCC-CCC---C------------Cc-cCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCc-
Q 004197 214 LKKYFAIFLKDSII-NDI---P------------EV-LESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRM- 274 (769)
Q Consensus 214 ~~~lr~L~l~~~~~-~~l---~------------~~-~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~- 274 (769)
.+++++|++.++.. ..+ + .. ..+++|+ +.+.++......+ ..+...+++|++|++++|
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL---ELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH---HHHHHHCTTCCEEEEESCE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHH---HHHHHhCCCCcEEeCCCcC
Confidence 35688888887642 111 1 01 1577888 8888775433333 333346889999999888
Q ss_pred ccCC--CCccccccCCccEEEeccccccccChhhhh----ccCCCcEEEeecCC--Cc--ccchhhccCCCCcEEEccCC
Q 004197 275 RLLS--LPSSIDLLVNLRTLCLDQSILGDIDIAIIG----KLGNLEILSFWRSD--IV--HLPKALGQLTKLRLLDLTDC 344 (769)
Q Consensus 275 ~i~~--lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~----~L~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~ 344 (769)
.++. ++..+..+++|++|++++|.++...+..+. .+++|++|++++|. +. .++.-+.++++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5553 555556888999999998886654333333 56689999998885 22 23333456789999999888
Q ss_pred cCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEE-EEeeCCCCCCcccccccccEEEE
Q 004197 345 FHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIE-INIKNDIILPEGFFARKLERFKI 423 (769)
Q Consensus 345 ~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~~L~~l~i 423 (769)
..+..++.. +.++++|++|++..+...... ..-......+.++++|+.|. +.....
T Consensus 222 ~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~-----~~~~~l~~~l~~~~~L~~Ls~~~~~~~----------------- 278 (594)
T 2p1m_B 222 VPLEKLATL-LQRAPQLEELGTGGYTAEVRP-----DVYSGLSVALSGCKELRCLSGFWDAVP----------------- 278 (594)
T ss_dssp SCHHHHHHH-HHHCTTCSEEECSBCCCCCCH-----HHHHHHHHHHHTCTTCCEEECCBTCCG-----------------
T ss_pred CcHHHHHHH-HhcCCcceEcccccccCccch-----hhHHHHHHHHhcCCCcccccCCcccch-----------------
Confidence 666666655 778889999987655321000 00011223567777777772 111000
Q ss_pred EEcCCccccccccccccccccccccccCcccccceEEeecccccccccc--ccccccccEEEecccCCcccccccCCCCC
Q 004197 424 SIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMK--LQAINKVEYLWLDKLQGVKNVLFDLDTNG 501 (769)
Q Consensus 424 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 501 (769)
..++. ....+++|+.|+++.+..+..... +..+++|+.|.+.++......... ...
T Consensus 279 --------~~l~~------------~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l--~~~ 336 (594)
T 2p1m_B 279 --------AYLPA------------VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL--AST 336 (594)
T ss_dssp --------GGGGG------------GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH--HHH
T ss_pred --------hhHHH------------HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHH--HHh
Confidence 00110 012345677777766653332222 356677777777765211111111 223
Q ss_pred CCCCceEEEecCCCc-----ceeccCcccc-ccccCCccceeeccccccccccccccccccccCCccEEEEc-----CCC
Q 004197 502 LPQLKLLWVQNNPDF-----FCIVDSMEMV-ACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVE-----NCD 570 (769)
Q Consensus 502 l~~L~~L~l~~~~~l-----~~i~~~~~~~-~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~-----~c~ 570 (769)
+++|+.|++.++... ..+ .+.... ....+++|+.|.+ ++.+++....... ...+++|+.|++. +|.
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l-~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVAL-TEQGLVSVSMGCPKLESVLY-FCRQMTNAALITI-ARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCC-CHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHH-HHHCTTCCEEEEEESSTTCCC
T ss_pred CCCCCEEEEecCcccccccCCCC-CHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHH-HhhCCCcceeEeecccCCCcc
Confidence 667777777543100 000 000000 1123566666633 3344333211100 1235666666666 455
Q ss_pred CCccccch----HHhhcCCCCcEEEEccCchhhhhhhcCCcccc-cCCcccccccccccceeccCCCCCCCcc-CcCCCc
Q 004197 571 ELSNIFWL----STAKCLPRLERVAVINCSKMKEIFAIGGEADV-VLPNLEALEISEINVDKIWHYNHLPIML-PHFQSL 644 (769)
Q Consensus 571 ~l~~l~~~----~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~-~~~~L~~L~L~~~~l~~i~~~~~~~~~l-~~l~~L 644 (769)
.++..+.. ..+..+++|++|++++ .+...... ... .+++|+.|+|++|.+++. ....+ ..+++|
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~---~l~~~~~~L~~L~L~~~~i~~~-----~~~~l~~~~~~L 483 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFE---YIGTYAKKMEMLSVAFAGDSDL-----GMHHVLSGCDSL 483 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHH---HHHHHCTTCCEEEEESCCSSHH-----HHHHHHHHCTTC
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHH---HHHHhchhccEeeccCCCCcHH-----HHHHHHhcCCCc
Confidence 55533221 1234556666666654 22111100 011 245666666666654321 00011 235666
Q ss_pred cEEEEecCCCcceecchhhHhhcccCcEEeEcccc
Q 004197 645 TRLIVWHCHKLKYIFLASMIRSFEQLQQLDIVNCR 679 (769)
Q Consensus 645 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 679 (769)
+.|++++|+. +..........+++|++|++++|+
T Consensus 484 ~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 484 RKLEIRDCPF-GDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred CEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCC
Confidence 6666666653 322112233445666666666664
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4.3e-20 Score=191.26 Aligned_cols=151 Identities=25% Similarity=0.361 Sum_probs=85.2
Q ss_pred CcceEEEeecCCCCCCCCcc-CCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEE
Q 004197 215 KKYFAIFLKDSIINDIPEVL-ESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTL 292 (769)
Q Consensus 215 ~~lr~L~l~~~~~~~l~~~~-~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 292 (769)
.+++.|+++++.+..+|... ++++|+ |.+.++... .+| . .+.++++|++|++++|.++.+|..++.+++|++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp---~-~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELP---D-TMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCC---S-CGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chh---H-HHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 57889999998887777532 455555 555554433 444 2 2345555555555555555555555555555555
Q ss_pred Eecccc-ccccChhhhhc---------cCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCcc
Q 004197 293 CLDQSI-LGDIDIAIIGK---------LGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLE 362 (769)
Q Consensus 293 ~L~~~~-l~~l~p~~i~~---------L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~ 362 (769)
++++|. +..+ |..++. +++|++|++++|.++.+|..++++++|++|++++|. +..+|.. ++.+++|+
T Consensus 156 ~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCC
T ss_pred ECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCC
Confidence 555544 3344 444332 555555555555555555555555555555555554 4445544 55555555
Q ss_pred EEEccCCcccc
Q 004197 363 ELYMGNCSIEW 373 (769)
Q Consensus 363 ~L~l~~~~~~~ 373 (769)
+|++++|....
T Consensus 233 ~L~Ls~n~~~~ 243 (328)
T 4fcg_A 233 ELDLRGCTALR 243 (328)
T ss_dssp EEECTTCTTCC
T ss_pred EEECcCCcchh
Confidence 55555555443
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=7.1e-19 Score=183.01 Aligned_cols=237 Identities=19% Similarity=0.236 Sum_probs=128.9
Q ss_pred cceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEE
Q 004197 216 KYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLC 293 (769)
Q Consensus 216 ~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~ 293 (769)
+++.++++++.+..+|... .+.++ +.+.++. ...++ ...|.++++|++|++++|.++.+ |..++.+++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~-i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNK-ITEIK---DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSC-CCCBC---TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCc-CCEeC---hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3455555555555554322 23455 5544443 22333 33455666666666666666654 55666666666666
Q ss_pred eccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEccCCcCccc--cChhhhcCCCCccEEEccCCc
Q 004197 294 LDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCFHLKV--IAPDVISSLIRLEELYMGNCS 370 (769)
Q Consensus 294 L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~~~~~~~~L~~L~~L~l~~~~ 370 (769)
+++|.++.+ |..+. ++|++|++++|.+..++. .+.++++|++|++++|. +.. +....++++++|++|++++|.
T Consensus 107 Ls~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCCcc-Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCc
Confidence 666666666 44433 566666666666665543 35666666666666654 221 222225666666666666665
Q ss_pred cccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcCCcccccccccccccccccccccc
Q 004197 371 IEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLIN 450 (769)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 450 (769)
+.. ++ ..+ .++|+.|+++++....++... .
T Consensus 183 l~~-l~-----------~~~--~~~L~~L~l~~n~l~~~~~~~------------------------------------~ 212 (330)
T 1xku_A 183 ITT-IP-----------QGL--PPSLTELHLDGNKITKVDAAS------------------------------------L 212 (330)
T ss_dssp CCS-CC-----------SSC--CTTCSEEECTTSCCCEECTGG------------------------------------G
T ss_pred ccc-CC-----------ccc--cccCCEEECCCCcCCccCHHH------------------------------------h
Confidence 541 11 111 145666666555433221110 2
Q ss_pred CcccccceEEeecccccccccc-ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCC
Q 004197 451 NNRESLRELKLKLDFTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNP 514 (769)
Q Consensus 451 ~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (769)
..+++|+.|+++.+........ +..+++|+.|++.++... ..+.. +..+++|++|+++++.
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~--l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG--LADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT--TTTCSSCCEEECCSSC
T ss_pred cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh--hccCCCcCEEECCCCc
Confidence 2334455555555554444443 566777888888777543 33332 5667888888888774
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=7.5e-20 Score=188.30 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=117.5
Q ss_pred CCcE-EEecCCCCcc--ccCCcchHhhhcCCcccEEEecC-cccC-CCCccccccCCccEEEecccccc-ccChhhhhcc
Q 004197 237 PQLE-FLLISPKNSF--VAPNVSENFFKRTKKLRVLDLTR-MRLL-SLPSSIDLLVNLRTLCLDQSILG-DIDIAIIGKL 310 (769)
Q Consensus 237 ~~Lr-l~l~~~~~~~--~~~~~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~l~~L~~L~L~~~~l~-~l~p~~i~~L 310 (769)
.+++ +.+.++.... .+| . .+.++++|++|++++ +.+. .+|..++++++|++|++++|.++ .+ |..++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~---~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP---S-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC---G-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGC
T ss_pred ceEEEEECCCCCccCCcccC---h-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC-CHHHhCC
Confidence 5678 8888777665 666 3 467888888998884 7666 67888888888899988888887 55 7888888
Q ss_pred CCCcEEEeecCCCc-ccchhhccCCCCcEEEccCCcCccccChhhhcCCC-CccEEEccCCccccceeccccccccCCch
Q 004197 311 GNLEILSFWRSDIV-HLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLI-RLEELYMGNCSIEWEVERVNSERSNASLD 388 (769)
Q Consensus 311 ~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 388 (769)
++|++|++++|.+. .+|..++++++|++|++++|.....+|.. +++++ +|++|++++|.+.+..+ .
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~-----------~ 192 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP-----------P 192 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC-----------G
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC-----------h
Confidence 88888888888887 67888888888888888887633367776 77887 88888888887765544 4
Q ss_pred hhcCCCCccEEEEEeeC
Q 004197 389 ELMLLPWLTTIEINIKN 405 (769)
Q Consensus 389 ~l~~l~~L~~L~l~~~~ 405 (769)
.+..++ |+.|++++|.
T Consensus 193 ~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 193 TFANLN-LAFVDLSRNM 208 (313)
T ss_dssp GGGGCC-CSEEECCSSE
T ss_pred HHhCCc-ccEEECcCCc
Confidence 555565 8888877664
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=1.4e-21 Score=213.93 Aligned_cols=141 Identities=21% Similarity=0.282 Sum_probs=94.5
Q ss_pred hHhhhcCCcccEEEecCcccC-----CCCccccccCCccEEEeccccccccChhhhh-ccC----CCcEEEeecCCCc--
Q 004197 257 ENFFKRTKKLRVLDLTRMRLL-----SLPSSIDLLVNLRTLCLDQSILGDIDIAIIG-KLG----NLEILSFWRSDIV-- 324 (769)
Q Consensus 257 ~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~-~L~----~L~~L~l~~~~l~-- 324 (769)
..++..+++|++|++++|.++ .++..+..+++|++|++++|.+....+..+. .+. +|++|++++|.+.
T Consensus 21 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHH
Confidence 344677888888888888876 4566677788888888888887653233333 355 6888888888777
Q ss_pred ---ccchhhccCCCCcEEEccCCcCccccC-h----hhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCc
Q 004197 325 ---HLPKALGQLTKLRLLDLTDCFHLKVIA-P----DVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWL 396 (769)
Q Consensus 325 ---~lp~~i~~l~~L~~L~l~~~~~l~~~~-~----~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 396 (769)
.+|..+.++++|++|++++|. +.... . ......++|++|++++|.+..... ......+..+++|
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-------~~l~~~l~~~~~L 172 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-------EPLASVLRAKPDF 172 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-------HHHHHHHHHCTTC
T ss_pred HHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH-------HHHHHHHhhCCCC
Confidence 457778888888888888876 43321 1 112235678888888886652110 1112455667788
Q ss_pred cEEEEEeeC
Q 004197 397 TTIEINIKN 405 (769)
Q Consensus 397 ~~L~l~~~~ 405 (769)
+.|+++++.
T Consensus 173 ~~L~L~~n~ 181 (461)
T 1z7x_W 173 KELTVSNND 181 (461)
T ss_dssp CEEECCSSB
T ss_pred CEEECcCCC
Confidence 888887664
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=186.96 Aligned_cols=189 Identities=20% Similarity=0.244 Sum_probs=125.0
Q ss_pred EEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEEeccc
Q 004197 220 IFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQS 297 (769)
Q Consensus 220 L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~ 297 (769)
.+.+++.+..+|... .++|+ +.+.++.. ..++ .+.|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i-~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNRI-TYIS---NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSCC-CEEC---TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCcC-cccC---HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 444555555555322 13555 55554432 2344 44567778888888888877765 455777788888888888
Q ss_pred cccccChhhhhccCCCcEEEeecCCCcccch--hhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccce
Q 004197 298 ILGDIDIAIIGKLGNLEILSFWRSDIVHLPK--ALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEV 375 (769)
Q Consensus 298 ~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~ 375 (769)
.++.+++..++++++|++|++++|.+..+|. .+.++++|++|++++|..+..++...++++++|++|++++|.+....
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 8777744457778888888888887777776 57777888888887775566666555777888888888777665333
Q ss_pred eccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccc--cccccEEEEE
Q 004197 376 ERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFF--ARKLERFKIS 424 (769)
Q Consensus 376 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~l~i~ 424 (769)
+ ..+..+++|+.|+++++....++.... .++|+.|.+.
T Consensus 191 ~-----------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 191 P-----------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp T-----------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred H-----------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 3 566777778888887777655554432 4566665554
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=4.1e-19 Score=192.55 Aligned_cols=241 Identities=20% Similarity=0.226 Sum_probs=151.5
Q ss_pred eEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEec
Q 004197 218 FAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLD 295 (769)
Q Consensus 218 r~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~ 295 (769)
+.++..+..+..+|... .++++ +.+.++.. ..++ ...|.++++|++|+|++|.++.++ ..+.++.+|++|+|+
T Consensus 46 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i-~~~~---~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGI-STNTRLLNLHENQI-QIIK---VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp CEEECCSCCCSSCCSCC-CTTCSEEECCSCCC-CEEC---TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEEccCCcC-CeeC---HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 34444444444454322 13444 44444332 2232 345677888888888888777654 567778888888888
Q ss_pred cccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccc
Q 004197 296 QSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWE 374 (769)
Q Consensus 296 ~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~ 374 (769)
+|.++.+++..+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++.+.+.++++|++|++++|.+. .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 888887755567788888888888887777765 57778888888888777677777766777888888888777665 1
Q ss_pred eeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcCCccccccccccccccccccccccCccc
Q 004197 375 VERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRE 454 (769)
Q Consensus 375 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 454 (769)
+..+..+++|+.|++++|....++... ...++
T Consensus 200 ------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------------------~~~l~ 231 (440)
T 3zyj_A 200 ------------IPNLTPLIKLDELDLSGNHLSAIRPGS------------------------------------FQGLM 231 (440)
T ss_dssp ------------CCCCTTCSSCCEEECTTSCCCEECTTT------------------------------------TTTCT
T ss_pred ------------ccccCCCcccCEEECCCCccCccChhh------------------------------------hccCc
Confidence 124667777777777766544432210 22345
Q ss_pred ccceEEeecccccccccc-ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCC
Q 004197 455 SLRELKLKLDFTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNP 514 (769)
Q Consensus 455 ~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (769)
+|+.|.++.+.+...... +..+++|+.|++.++......... +..+++|+.|++.+++
T Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL--FTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT--TSSCTTCCEEECCSSC
T ss_pred cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH--hccccCCCEEEcCCCC
Confidence 566666666555544444 566667777777666443222211 3456677777776664
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=4.6e-19 Score=192.87 Aligned_cols=241 Identities=20% Similarity=0.211 Sum_probs=152.5
Q ss_pred eEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEec
Q 004197 218 FAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLD 295 (769)
Q Consensus 218 r~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~ 295 (769)
+.++..+..+..+|... .++++ |.+.++... .++ .+.|.++++|++|+|++|.++.++ ..+.++.+|++|+|+
T Consensus 57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~-~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQ-MIQ---ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp CEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-EEC---TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred cEEEECCCCcCccCCCC-CCCccEEECcCCcCc-eEC---HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 44555555555555322 23455 555544332 232 345677888888888888887653 667788888888888
Q ss_pred cccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccc
Q 004197 296 QSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWE 374 (769)
Q Consensus 296 ~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~ 374 (769)
+|.++.+++..++++++|++|++++|.+..+|. .+.++++|++|++++|..+..++.+.+..+++|++|++++|.+..
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 888887755667788888888888888877765 577788888888888777777777667788888888888776651
Q ss_pred eeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcCCccccccccccccccccccccccCccc
Q 004197 375 VERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRE 454 (769)
Q Consensus 375 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 454 (769)
+..+..+++|+.|++++|....+++.. ...++
T Consensus 211 ------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------------------~~~l~ 242 (452)
T 3zyi_A 211 ------------MPNLTPLVGLEELEMSGNHFPEIRPGS------------------------------------FHGLS 242 (452)
T ss_dssp ------------CCCCTTCTTCCEEECTTSCCSEECGGG------------------------------------GTTCT
T ss_pred ------------cccccccccccEEECcCCcCcccCccc------------------------------------ccCcc
Confidence 124667777777777776544432210 22344
Q ss_pred ccceEEeecccccccccc-ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCC
Q 004197 455 SLRELKLKLDFTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNP 514 (769)
Q Consensus 455 ~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (769)
+|+.|+++.+........ +..+++|+.|++.++......... +..+++|+.|++.+++
T Consensus 243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL--FTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS--STTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH--hccccCCCEEEccCCC
Confidence 555666655554444443 555666666666665432211111 3455666666666554
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=3.8e-19 Score=182.94 Aligned_cols=143 Identities=21% Similarity=0.211 Sum_probs=68.8
Q ss_pred eCCcccccCCccccCcceEEEeecCCCCCCCCccCCCCcEEEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCC-
Q 004197 201 RNKDVWKWPDADALKKYFAIFLKDSIINDIPEVLESPQLEFLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL- 279 (769)
Q Consensus 201 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lrl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l- 279 (769)
.+..++.+|. ..++++++|++++|.+..++. ++|.++++|++|++++|.++.+
T Consensus 15 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~-------------------------~~~~~l~~L~~L~L~~n~l~~~~ 68 (306)
T 2z66_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPH-------------------------GVFDKLTQLTKLSLSSNGLSFKG 68 (306)
T ss_dssp CSSCCSSCCS-CCCTTCCEEECCSSCCCCCCT-------------------------TTTTTCTTCSEEECCSSCCCEEE
T ss_pred CCCCcccCCC-CCCCCCCEEECCCCccCccCH-------------------------hHhhccccCCEEECCCCccCccc
Confidence 3344444443 344566666666666555543 3344455555555555544422
Q ss_pred --CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch--hhccCCCCcEEEccCCcCccccChhhh
Q 004197 280 --PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK--ALGQLTKLRLLDLTDCFHLKVIAPDVI 355 (769)
Q Consensus 280 --p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~~~~~~ 355 (769)
|..+..+.+|++|++++|.+..+ |..+..+++|++|++++|.+..+|. .+.++++|++|++++|. +...+...+
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 146 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIF 146 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTT
T ss_pred CcccccccccccCEEECCCCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhc
Confidence 33344445555555555554444 4444555555555555554444432 34445555555555543 333322224
Q ss_pred cCCCCccEEEccCCcc
Q 004197 356 SSLIRLEELYMGNCSI 371 (769)
Q Consensus 356 ~~L~~L~~L~l~~~~~ 371 (769)
+.+++|++|++++|.+
T Consensus 147 ~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSF 162 (306)
T ss_dssp TTCTTCCEEECTTCEE
T ss_pred ccCcCCCEEECCCCcc
Confidence 4455555555554444
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=5.4e-19 Score=179.72 Aligned_cols=196 Identities=21% Similarity=0.224 Sum_probs=123.7
Q ss_pred EEEeCCcccccCCccccCcceEEEeecCCCCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCc
Q 004197 198 FAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRM 274 (769)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 274 (769)
+...+..+..+|. ..++++++|+++++.+..++. ...+++|+ +.+.++... .++ ...|..+++|++|++++|
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~---~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RID---AAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EEC---TTTTTTCTTCCEEECCSC
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeC---HhhcCCccCCCEEeCCCC
Confidence 3344455555554 456778888888877766653 22566777 666655432 232 344566777777777777
Q ss_pred c-cCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEccCCcCccccC
Q 004197 275 R-LLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDLTDCFHLKVIA 351 (769)
Q Consensus 275 ~-i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~ 351 (769)
. +..+ |..+..+++|++|++++|.++.++|..++++++|++|++++|.+..+|.. ++++++|++|++++|. ++.++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccC
Confidence 5 6655 55666777777777777776666556667777777777777776666543 6667777777777764 56666
Q ss_pred hhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCC
Q 004197 352 PDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILP 410 (769)
Q Consensus 352 ~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 410 (769)
...+..+++|++|++++|.+....+ ..+..+++|+.|++++|....++
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHP-----------HAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSSCCSCCC
T ss_pred HHHhcCccccCEEECCCCcccccCH-----------hHccCcccccEeeCCCCcCCcCC
Confidence 5556667777777777766553322 45566666777776666544443
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=181.78 Aligned_cols=144 Identities=23% Similarity=0.337 Sum_probs=109.7
Q ss_pred CccccCCcchHhhhcCCcccEEEecCcccCCCCc-cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCccc
Q 004197 248 NSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPS-SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHL 326 (769)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~l 326 (769)
....+| .++ .++|++|++++|.++.+|. .+.++++|++|++++|.++.++|..++++++|++|++++|.++.+
T Consensus 42 ~l~~iP---~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 42 SLNSIP---SGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp TCSSCC---TTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred Cccccc---ccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 445666 332 3588899999888887765 688888999999998888887667788888999999998888888
Q ss_pred chh-hccCCCCcEEEccCCcCccccCh-hhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEee
Q 004197 327 PKA-LGQLTKLRLLDLTDCFHLKVIAP-DVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIK 404 (769)
Q Consensus 327 p~~-i~~l~~L~~L~l~~~~~l~~~~~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~ 404 (769)
|.. ++++++|++|++++|. +..+|. ..++++++|++|++++|.....++ ...+..+++|+.|+++++
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~----------~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQ----------RKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEEC----------TTTTTTCCEEEEEEEEET
T ss_pred CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccC----------HHHccCCCCCCEEECCCC
Confidence 876 7888899999988875 667776 447888888888888874222221 146777888888888887
Q ss_pred CCCC
Q 004197 405 NDII 408 (769)
Q Consensus 405 ~~~~ 408 (769)
....
T Consensus 185 ~l~~ 188 (353)
T 2z80_A 185 DLQS 188 (353)
T ss_dssp TCCE
T ss_pred CcCc
Confidence 6544
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=4.2e-18 Score=189.79 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=86.6
Q ss_pred CcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccC
Q 004197 264 KKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTD 343 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 343 (769)
.++++|+++++.++.+|..+. ++|++|++++|.++.+ |. .+++|++|++++|.++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 458888888888888887765 7888888888888888 44 57888888888888888886 678888888888
Q ss_pred CcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCC
Q 004197 344 CFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIIL 409 (769)
Q Consensus 344 ~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 409 (769)
|. ++.+|. .+++|++|++++|.+.. ++ . .+++|+.|+++.|....+
T Consensus 111 N~-l~~l~~----~l~~L~~L~L~~N~l~~-lp-----------~---~l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 111 NP-LTHLPA----LPSGLCKLWIFGNQLTS-LP-----------V---LPPGLQELSVSDNQLASL 156 (622)
T ss_dssp CC-CCCCCC----CCTTCCEEECCSSCCSC-CC-----------C---CCTTCCEEECCSSCCSCC
T ss_pred Cc-CCCCCC----CCCCcCEEECCCCCCCc-CC-----------C---CCCCCCEEECcCCcCCCc
Confidence 75 666665 46778888888876652 11 1 136777777776654433
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=6e-21 Score=209.04 Aligned_cols=134 Identities=19% Similarity=0.220 Sum_probs=94.4
Q ss_pred CCcccEEEecCcccCCC--CccccccCCccEEEecccccc-----ccChhhhhccCCCcEEEeecCCCccc-chhh-ccC
Q 004197 263 TKKLRVLDLTRMRLLSL--PSSIDLLVNLRTLCLDQSILG-----DIDIAIIGKLGNLEILSFWRSDIVHL-PKAL-GQL 333 (769)
Q Consensus 263 l~~Lr~L~L~~~~i~~l--p~~i~~l~~L~~L~L~~~~l~-----~l~p~~i~~L~~L~~L~l~~~~l~~l-p~~i-~~l 333 (769)
.++|++|+++++.++.. ...+..+++|++|++++|.++ .+ +..+..+++|++|++++|.+... +..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI-SSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHH-HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHH-HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 35789999999988754 333788999999999999977 45 67788889999999999988742 2233 335
Q ss_pred C----CCcEEEccCCcCcc-----ccChhhhcCCCCccEEEccCCccccceeccccccccCCchh-hcCCCCccEEEEEe
Q 004197 334 T----KLRLLDLTDCFHLK-----VIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDE-LMLLPWLTTIEINI 403 (769)
Q Consensus 334 ~----~L~~L~l~~~~~l~-----~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~l~~L~~L~l~~ 403 (769)
+ +|++|++++|. ++ .++.. +..+++|++|++++|.+..... ...... ....++|+.|++++
T Consensus 81 ~~~~~~L~~L~L~~n~-i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~-------~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCC-LTGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGL-------QLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp CSTTCCCCEEECTTSC-CBGGGHHHHHHH-TTSCTTCCEEECCSSBCHHHHH-------HHHHHHHTSTTCCCCEEECTT
T ss_pred hhCCCceeEEEccCCC-CCHHHHHHHHHH-HccCCceeEEECCCCcCchHHH-------HHHHHHHhcCCCcceEEECCC
Confidence 5 69999999986 54 33444 7889999999999887652111 000011 22356788888876
Q ss_pred eCC
Q 004197 404 KND 406 (769)
Q Consensus 404 ~~~ 406 (769)
+..
T Consensus 152 n~l 154 (461)
T 1z7x_W 152 CSL 154 (461)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.4e-17 Score=181.04 Aligned_cols=209 Identities=18% Similarity=0.203 Sum_probs=153.7
Q ss_pred CccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCccc
Q 004197 248 NSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHL 326 (769)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~l 326 (769)
....+| .++ .+++++|+|++|.++.+ |..++++++|++|+|++|.++.++|..+.++++|++|++++|.++.+
T Consensus 65 ~l~~iP---~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 65 GLSEVP---QGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp CCSSCC---SCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred CcCccC---CCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc
Confidence 345666 332 36899999999999876 67799999999999999999988678899999999999999999988
Q ss_pred chh-hccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeC
Q 004197 327 PKA-LGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKN 405 (769)
Q Consensus 327 p~~-i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 405 (769)
|.. +..+++|++|++++|. +..+|...+.++++|++|+++++.....++. ..+..+++|+.|++++|.
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE----------GAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT----------TTTTTCTTCCEEECTTSC
T ss_pred ChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh----------hhccCCCCCCEEECCCCc
Confidence 765 8889999999999986 7788877789999999999988655533331 457788899999998876
Q ss_pred CCCCCcccccccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeecccccccccc-ccccccccEEEe
Q 004197 406 DIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMK-LQAINKVEYLWL 484 (769)
Q Consensus 406 ~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l 484 (769)
...+|. ...+++|+.|+++.+.+...... +..+++|+.|++
T Consensus 208 l~~~~~--------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 208 IKDMPN--------------------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249 (452)
T ss_dssp CSSCCC--------------------------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEEC
T ss_pred cccccc--------------------------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEe
Confidence 554432 22445566666666665554444 566666666666
Q ss_pred cccCCcccccccCCCCCCCCCceEEEecC
Q 004197 485 DKLQGVKNVLFDLDTNGLPQLKLLWVQNN 513 (769)
Q Consensus 485 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 513 (769)
.++......+.. +..+++|+.|+++++
T Consensus 250 ~~n~l~~~~~~~--~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 250 MNSQVSLIERNA--FDGLASLVELNLAHN 276 (452)
T ss_dssp TTSCCCEECTTT--TTTCTTCCEEECCSS
T ss_pred CCCcCceECHHH--hcCCCCCCEEECCCC
Confidence 665443322222 345566666666655
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=180.27 Aligned_cols=210 Identities=20% Similarity=0.237 Sum_probs=151.5
Q ss_pred CCccccCCcchHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcc
Q 004197 247 KNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH 325 (769)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~ 325 (769)
.....+| ..+ .+++++|+|++|.++.++ ..+.++++|++|+|++|.++.+++..+.++++|++|++++|.++.
T Consensus 53 ~~l~~iP---~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 126 (440)
T 3zyj_A 53 KNLREVP---DGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126 (440)
T ss_dssp CCCSSCC---SCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS
T ss_pred CCcCcCC---CCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe
Confidence 3445677 332 378999999999999764 778999999999999999998877889999999999999999998
Q ss_pred cch-hhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEee
Q 004197 326 LPK-ALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIK 404 (769)
Q Consensus 326 lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~ 404 (769)
+|. .+..+++|++|++++|. +..++...+.++++|++|+++++.....++. ..+..+++|+.|++++|
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISE----------GAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT----------TTTTTCSSCCEEECTTS
T ss_pred eCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCc----------chhhcccccCeecCCCC
Confidence 886 58899999999999986 7788877689999999999988655433331 45778899999999887
Q ss_pred CCCCCCcccccccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeecccccccccc-ccccccccEEE
Q 004197 405 NDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMK-LQAINKVEYLW 483 (769)
Q Consensus 405 ~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~ 483 (769)
....+|. ...+.+|+.|+++.+.+...... +..+++|+.|+
T Consensus 196 ~l~~~~~--------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 196 NLREIPN--------------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp CCSSCCC--------------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCccccc--------------------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 6655442 22344566666666654444333 55566666666
Q ss_pred ecccCCcccccccCCCCCCCCCceEEEecC
Q 004197 484 LDKLQGVKNVLFDLDTNGLPQLKLLWVQNN 513 (769)
Q Consensus 484 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 513 (769)
+.++......+.. +..+++|+.|+++++
T Consensus 238 L~~n~l~~~~~~~--~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 238 MIQSQIQVIERNA--FDNLQSLVEINLAHN 265 (440)
T ss_dssp CTTCCCCEECTTS--STTCTTCCEEECTTS
T ss_pred CCCCceeEEChhh--hcCCCCCCEEECCCC
Confidence 6555433222211 344555555555554
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=5.8e-17 Score=180.55 Aligned_cols=258 Identities=18% Similarity=0.160 Sum_probs=143.2
Q ss_pred cceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEEEe
Q 004197 216 KYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCL 294 (769)
Q Consensus 216 ~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 294 (769)
+++.|+++++.+..+|.... ++|+ |.+.++. ...+| . .+++|++|++++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~-l~~lp---~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNN-LTSLP---A----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCC-CSCCC---C----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCC-CCCCC---C----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 47788888888877775332 5555 5555543 22444 1 45666666666666666664 4566666666
Q ss_pred ccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccc
Q 004197 295 DQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWE 374 (769)
Q Consensus 295 ~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~ 374 (769)
++|.++.+ |. .+.+|++|++++|.++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+..
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC-
Confidence 66666666 33 455666666666666666643 3566666666654 444443 23456666666655441
Q ss_pred eeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcCCccccccccccccccccccccccCccc
Q 004197 375 VERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRE 454 (769)
Q Consensus 375 ~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 454 (769)
+ . ..+++|+.|+++.|....+|..
T Consensus 176 l------------~--~~~~~L~~L~Ls~N~l~~l~~~------------------------------------------ 199 (622)
T 3g06_A 176 L------------P--MLPSGLQELSVSDNQLASLPTL------------------------------------------ 199 (622)
T ss_dssp C------------C--CCCTTCCEEECCSSCCSCCCCC------------------------------------------
T ss_pred C------------c--ccCCCCcEEECCCCCCCCCCCc------------------------------------------
Confidence 0 1 2345555665555543333221
Q ss_pred ccceEEeeccccccccccccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCcc
Q 004197 455 SLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLL 534 (769)
Q Consensus 455 ~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L 534 (769)
+++|+.|.+.++... .++ ..+++|+.|+++++. ++.+ + ..+++|
T Consensus 200 ---------------------~~~L~~L~L~~N~l~-~l~-----~~~~~L~~L~Ls~N~-L~~l-------p-~~l~~L 243 (622)
T 3g06_A 200 ---------------------PSELYKLWAYNNRLT-SLP-----ALPSGLKELIVSGNR-LTSL-------P-VLPSEL 243 (622)
T ss_dssp ---------------------CTTCCEEECCSSCCS-SCC-----CCCTTCCEEECCSSC-CSCC-------C-CCCTTC
T ss_pred ---------------------cchhhEEECcCCccc-ccC-----CCCCCCCEEEccCCc-cCcC-------C-CCCCcC
Confidence 233444444433221 111 124566666666652 2221 1 345666
Q ss_pred ceeeccccccccccccccccccccCCccEEEEcCCCCCccccchHHhhcCCCCcEEEEccCchhhh
Q 004197 535 ESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELSNIFWLSTAKCLPRLERVAVINCSKMKE 600 (769)
Q Consensus 535 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 600 (769)
+.|.++++ .++.++. .+++|+.|++++| .++.+|. .+..+++|+.|++++|+....
T Consensus 244 ~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 244 KELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCCHH
T ss_pred cEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCCCCc
Confidence 66666664 3444432 4567788888776 4556654 467778888888887764433
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.3e-17 Score=171.55 Aligned_cols=130 Identities=21% Similarity=0.180 Sum_probs=104.6
Q ss_pred CcccEEEecCcccCCCCcc-ccccCCccEEEeccccccccC--hhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEE
Q 004197 264 KKLRVLDLTRMRLLSLPSS-IDLLVNLRTLCLDQSILGDID--IAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLD 340 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~l~--p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 340 (769)
++|++|++++|.++.+|.. +.++++|++|++++|.++.++ |..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 6789999999999888765 688999999999999877542 4677788999999999999888888889999999999
Q ss_pred ccCCcCccccCh-hhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeC
Q 004197 341 LTDCFHLKVIAP-DVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKN 405 (769)
Q Consensus 341 l~~~~~l~~~~~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 405 (769)
+++|. +..++. ..+..+++|++|++++|.+....+ ..+..+++|+.|+++++.
T Consensus 108 l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 108 FQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-----------GIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECST-----------TTTTTCTTCCEEECTTCE
T ss_pred CCCCc-ccccccchhhhhccCCCEEECCCCcCCccch-----------hhcccCcCCCEEECCCCc
Confidence 99876 666654 347889999999998887763333 456777888888877664
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=2.3e-17 Score=167.64 Aligned_cols=172 Identities=21% Similarity=0.241 Sum_probs=110.1
Q ss_pred eEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEEec
Q 004197 218 FAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLD 295 (769)
Q Consensus 218 r~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 295 (769)
++++..++.+..+|... .++|+ +.+.++.. ..++ ...|..+++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i-~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRI-SHVP---AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCC-CEEC---TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcC-CccC---HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 66777777777776422 35666 66665543 2333 44566777777777777777655 5567777777777777
Q ss_pred ccc-ccccChhhhhccCCCcEEEeecCCCccc-chhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCcccc
Q 004197 296 QSI-LGDIDIAIIGKLGNLEILSFWRSDIVHL-PKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEW 373 (769)
Q Consensus 296 ~~~-l~~l~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~ 373 (769)
+|. ++.++|..+.++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++.+++|++|++++|.+..
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc
Confidence 776 6666566677777777777777766655 3456667777777777765 555665546667777777777766542
Q ss_pred ceeccccccccCCchhhcCCCCccEEEEEeeCC
Q 004197 374 EVERVNSERSNASLDELMLLPWLTTIEINIKND 406 (769)
Q Consensus 374 ~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 406 (769)
..+ ..+..+++|+.|++++|..
T Consensus 168 ~~~-----------~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 168 VPE-----------RAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECT-----------TTTTTCTTCCEEECCSSCC
T ss_pred cCH-----------HHhcCccccCEEECCCCcc
Confidence 211 3455666666666666543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=8.5e-18 Score=173.44 Aligned_cols=246 Identities=13% Similarity=0.087 Sum_probs=143.5
Q ss_pred hHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCC
Q 004197 257 ENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTK 335 (769)
Q Consensus 257 ~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~ 335 (769)
..++..+++|++|++++|.++.++ ..++.+++|++|++++|.++.+ +. ++.+++|++|++++|.++.+|. .++
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~ 100 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD-LESLSTLRTLDLNNNYVQELLV----GPS 100 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE-ETTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh-hhhcCCCCEEECcCCccccccC----CCC
Confidence 455566677777777777777654 5677777777777777777766 33 7777777777777777766552 367
Q ss_pred CcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCccccc
Q 004197 336 LRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFA 415 (769)
Q Consensus 336 L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 415 (769)
|++|++++|. +..++.. .+++|++|++++|.+....+ ..+..+++|+.|++++|....+
T Consensus 101 L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~------ 159 (317)
T 3o53_A 101 IETLHAANNN-ISRVSCS---RGQGKKNIYLANNKITMLRD-----------LDEGCRSRVQYLDLKLNEIDTV------ 159 (317)
T ss_dssp CCEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCCSGGG-----------BCTGGGSSEEEEECTTSCCCEE------
T ss_pred cCEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCCCccc-----------hhhhccCCCCEEECCCCCCCcc------
Confidence 7777777765 5555432 35667777777666552222 2344455555555554432211
Q ss_pred ccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeecccccccccc-c-cccccccEEEecccCCcccc
Q 004197 416 RKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMK-L-QAINKVEYLWLDKLQGVKNV 493 (769)
Q Consensus 416 ~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l-~~~~~L~~L~l~~~~~~~~~ 493 (769)
... + ..+++|+.|++.++.....
T Consensus 160 ------------------------------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 160 ------------------------------------------------------NFAELAASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp ------------------------------------------------------EGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred ------------------------------------------------------cHHHHhhccCcCCEEECCCCcCccc-
Confidence 111 1 2234444444444432211
Q ss_pred cccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcCCCCCc
Q 004197 494 LFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVENCDELS 573 (769)
Q Consensus 494 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 573 (769)
+. ...+++|+.|+++++. ++.++.. ...+++|+.|++++| .++
T Consensus 185 ~~---~~~l~~L~~L~Ls~N~------------------------------l~~l~~~---~~~l~~L~~L~L~~N-~l~ 227 (317)
T 3o53_A 185 KG---QVVFAKLKTLDLSSNK------------------------------LAFMGPE---FQSAAGVTWISLRNN-KLV 227 (317)
T ss_dssp EC---CCCCTTCCEEECCSSC------------------------------CCEECGG---GGGGTTCSEEECTTS-CCC
T ss_pred cc---ccccccCCEEECCCCc------------------------------CCcchhh---hcccCcccEEECcCC-ccc
Confidence 11 1224555555555442 2222221 335677888888776 455
Q ss_pred cccchHHhhcCCCCcEEEEccCchh-hhhhhcCCcccccCCcccccccccc-ccee
Q 004197 574 NIFWLSTAKCLPRLERVAVINCSKM-KEIFAIGGEADVVLPNLEALEISEI-NVDK 627 (769)
Q Consensus 574 ~l~~~~~~~~l~~L~~L~i~~c~~l-~~~~~~~~~~~~~~~~L~~L~L~~~-~l~~ 627 (769)
.+|. .+..+++|+.|++++++.. ..++. ....+++|+.|++.++ .++.
T Consensus 228 ~l~~--~~~~l~~L~~L~l~~N~~~~~~~~~----~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 228 LIEK--ALRFSQNLEHFDLRGNGFHCGTLRD----FFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EECT--TCCCCTTCCEEECTTCCCBHHHHHH----HHHTCHHHHHHHHHHHHHHHS
T ss_pred chhh--HhhcCCCCCEEEccCCCccCcCHHH----HHhccccceEEECCCchhccC
Confidence 6654 4567788888888887654 22222 2345788888888877 6654
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=4.6e-17 Score=164.55 Aligned_cols=112 Identities=23% Similarity=0.382 Sum_probs=68.6
Q ss_pred hhhcCCcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCC
Q 004197 259 FFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKL 336 (769)
Q Consensus 259 ~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L 336 (769)
.|.++++|++|++++|.++.++ ..+..+++|++|++++|.++.++|..++++++|++|++++|.+..++. .++++++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 3456666666666666666543 346666666666666666666544566666666666666666665544 46666666
Q ss_pred cEEEccCCcCccc--cChhhhcCCCCccEEEccCCccc
Q 004197 337 RLLDLTDCFHLKV--IAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 337 ~~L~l~~~~~l~~--~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
++|++++|. +.. +|.. ++.+++|++|++++|.+.
T Consensus 127 ~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 127 KELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCC
Confidence 666666654 333 3444 666666666666666554
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=8.2e-18 Score=173.57 Aligned_cols=227 Identities=13% Similarity=0.037 Sum_probs=157.3
Q ss_pred hHhhhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCC
Q 004197 257 ENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKL 336 (769)
Q Consensus 257 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L 336 (769)
.+.|..+++|++|++++|.++.+++ +..+++|++|++++|.++.+ | ..++|++|++++|.+..++.. .+++|
T Consensus 51 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~--~~~~L 122 (317)
T 3o53_A 51 AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSCS--RGQGK 122 (317)
T ss_dssp HHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCSEEEEC--CCSSC
T ss_pred HHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc-c----CCCCcCEEECCCCccCCcCcc--ccCCC
Confidence 4567888888889988888876654 88888888999888888877 3 347888888888888877643 47888
Q ss_pred cEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhh-cCCCCccEEEEEeeCCCCCCccccc
Q 004197 337 RLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDEL-MLLPWLTTIEINIKNDIILPEGFFA 415 (769)
Q Consensus 337 ~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~~L~l~~~~~~~~~~~~~~ 415 (769)
++|++++|. +..++...++.+++|++|++++|.+....+ ..+ ..+++|+.|++++|....++..
T Consensus 123 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~~--- 187 (317)
T 3o53_A 123 KNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-----------AELAASSDTLEHLNLQYNFIYDVKGQ--- 187 (317)
T ss_dssp EEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEG-----------GGGGGGTTTCCEEECTTSCCCEEECC---
T ss_pred CEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccH-----------HHHhhccCcCCEEECCCCcCcccccc---
Confidence 888888876 666655447788888888888887763332 333 4678888888887765443322
Q ss_pred ccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCCcccccc
Q 004197 416 RKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLF 495 (769)
Q Consensus 416 ~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 495 (769)
..+++|+.|+++.+.....+..+..+++|+.|++.++... ..+.
T Consensus 188 -----------------------------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 188 -----------------------------------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp -----------------------------------CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred -----------------------------------cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhh
Confidence 1245566667766665555444677788888888887544 3433
Q ss_pred cCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeecccccccccc
Q 004197 496 DLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRI 548 (769)
Q Consensus 496 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~ 548 (769)
. +..+++|+.|++++++.... ........+++|+.|.+.++..++..
T Consensus 232 ~--~~~l~~L~~L~l~~N~~~~~----~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 232 A--LRFSQNLEHFDLRGNGFHCG----TLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp T--CCCCTTCCEEECTTCCCBHH----HHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred H--hhcCCCCCEEEccCCCccCc----CHHHHHhccccceEEECCCchhccCC
Confidence 3 56788999999988864311 00113345677777777766655543
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.4e-16 Score=160.14 Aligned_cols=191 Identities=25% Similarity=0.317 Sum_probs=114.1
Q ss_pred EEEeCCcccccCCccccCcceEEEeecCCCCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCc
Q 004197 198 FAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRM 274 (769)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 274 (769)
+......+..+|. ..++++++|++++|.+..++. ...+++|+ |.+.++.. ..+| ..+|..+++|++|++++|
T Consensus 21 l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~---~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 21 VDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLP---AGIFKELKNLETLWVTDN 95 (270)
T ss_dssp EECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCC---TTTTSSCTTCCEEECCSS
T ss_pred EEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeC---hhhhcCCCCCCEEECCCC
Confidence 3334445555553 345567777777777666653 22566666 66655432 3444 455566666666666666
Q ss_pred ccCCCCc-cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEccCCcCccccCh
Q 004197 275 RLLSLPS-SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDLTDCFHLKVIAP 352 (769)
Q Consensus 275 ~i~~lp~-~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~ 352 (769)
.++.+|. .+..+++|++|++++|.++.++|..++++++|++|++++|.+..+|.. +..+++|++|++++|. +..++.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeCh
Confidence 6666543 346666666666666666666455566666666666666666666544 5666666666666654 555555
Q ss_pred hhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeC
Q 004197 353 DVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKN 405 (769)
Q Consensus 353 ~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 405 (769)
..+.++++|++|++++|.+....+ ..+..+++|+.|++++|.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPE-----------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCT-----------TTTTTCTTCCEEECCSSC
T ss_pred hHhccCCCcCEEECCCCcCCcCCH-----------HHhccccCCCEEEecCCC
Confidence 545666666666666665542111 335556666666666554
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=2e-16 Score=159.04 Aligned_cols=130 Identities=21% Similarity=0.272 Sum_probs=67.9
Q ss_pred cccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhh-ccCCCCcEEEccC
Q 004197 265 KLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKAL-GQLTKLRLLDLTD 343 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~ 343 (769)
..+.++++++.++.+|..+. .+|++|++++|.++.+++..++++++|++|++++|.++.+|..+ .++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 34555555555555554433 35555555555555553345555555555555555555555432 4555555555555
Q ss_pred CcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCC
Q 004197 344 CFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDII 408 (769)
Q Consensus 344 ~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 408 (769)
|. +..+|...+..+++|++|++++|.+....+ ..+..+++|+.|+++++....
T Consensus 95 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 95 NK-LQALPIGVFDQLVNLAELRLDRNQLKSLPP-----------RVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp SC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCC
T ss_pred Cc-CCcCCHhHcccccCCCEEECCCCccCeeCH-----------HHhCcCcCCCEEECCCCcCCc
Confidence 44 444554444555555555555555442211 334555555555555554433
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=2e-16 Score=160.37 Aligned_cols=181 Identities=22% Similarity=0.225 Sum_probs=143.3
Q ss_pred cCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEE
Q 004197 214 LKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTL 292 (769)
Q Consensus 214 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 292 (769)
.+++++++++++.+..+|... .+.++ |.+.++... .++ ...|..+++|++|++++|.++.++.. +.+++|++|
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~-~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLY-TFS---LATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCS-EEE---GGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCC-ccC---HHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 456788888888888777543 25777 777766543 333 45678899999999999998887654 788899999
Q ss_pred EeccccccccChhhhhccCCCcEEEeecCCCcccc-hhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCcc
Q 004197 293 CLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLP-KALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSI 371 (769)
Q Consensus 293 ~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~ 371 (769)
++++|.++.+ |..+..+++|++|++++|.++.+| ..+..+++|++|++++|. +..+|.+.+..+++|+.|++++|.+
T Consensus 83 ~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcC
Confidence 9999999988 788889999999999999988887 458889999999999876 7788877678899999999998887
Q ss_pred ccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCccc
Q 004197 372 EWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGF 413 (769)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~ 413 (769)
....+ ..+..+++|+.|+++.|....+|..+
T Consensus 161 ~~l~~-----------~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 161 TELPA-----------GLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp SCCCT-----------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CccCH-----------HHhcCcCCCCEEECCCCcCCccChhh
Confidence 63222 45677888999999888877776653
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.6e-16 Score=156.69 Aligned_cols=197 Identities=13% Similarity=0.144 Sum_probs=153.1
Q ss_pred ccccCCccccCcceEEEeecCCCCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecC-cccCCCC
Q 004197 205 VWKWPDADALKKYFAIFLKDSIINDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTR-MRLLSLP 280 (769)
Q Consensus 205 ~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp 280 (769)
+..+|. .+.++++|++++|.+..++. ...+++|+ +.+.++.....++ ...|.++++|++|++++ |.++.+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~---~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE---SHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC---TTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC---HhHcCCCcCCcEEECCCCCCeeEcC
Confidence 666676 67799999999999988875 23788999 8888876566666 66778899999999998 8888776
Q ss_pred -ccccccCCccEEEeccccccccChhhhhccCCCc---EEEeecC-CCcccchh-hccCCCCc-EEEccCCcCccccChh
Q 004197 281 -SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLE---ILSFWRS-DIVHLPKA-LGQLTKLR-LLDLTDCFHLKVIAPD 353 (769)
Q Consensus 281 -~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~l~~~~~~ 353 (769)
..+..+++|++|++++|.++.+ |. ++.+++|+ +|++++| .+..+|.. +..+++|+ +|++++|. ++.+|..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~ 174 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGY 174 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTT
T ss_pred HHHhCCCCCCCEEeCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHh
Confidence 4678899999999999998888 55 88888888 9999999 88888764 78899999 99998876 7788877
Q ss_pred hhcCCCCccEEEccCCc-cccceeccccccccCCchhhcCC-CCccEEEEEeeCCCCCCcccccccccEEE
Q 004197 354 VISSLIRLEELYMGNCS-IEWEVERVNSERSNASLDELMLL-PWLTTIEINIKNDIILPEGFFARKLERFK 422 (769)
Q Consensus 354 ~~~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 422 (769)
.+.. ++|++|++++|. +....+ ..+..+ ++|+.|+++.+....+|.. .+++|+.|.
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~-----------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~ 232 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDK-----------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELI 232 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECT-----------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEE
T ss_pred hcCC-CCCCEEEcCCCCCcccCCH-----------HHhhccccCCcEEECCCCccccCChh-HhccCceee
Confidence 4444 889999998884 552222 456777 8899999988877766654 344455443
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=2.5e-17 Score=169.48 Aligned_cols=202 Identities=18% Similarity=0.150 Sum_probs=128.2
Q ss_pred cCCcccEEEecCcccC-CCCccc--cccCCccEEEeccccccccChhhhhcc-----CCCcEEEeecCCCcccc-hhhcc
Q 004197 262 RTKKLRVLDLTRMRLL-SLPSSI--DLLVNLRTLCLDQSILGDIDIAIIGKL-----GNLEILSFWRSDIVHLP-KALGQ 332 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~~~l~~l~p~~i~~L-----~~L~~L~l~~~~l~~lp-~~i~~ 332 (769)
++++|++|++++|.++ .+|..+ +.+++|++|++++|.++.+ |..++.+ ++|++|++++|.+..+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 5778888888888777 567665 7788888888888888777 7777777 78888888888777666 56778
Q ss_pred CCCCcEEEccCCcCccc--cChhhh--cCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCC
Q 004197 333 LTKLRLLDLTDCFHLKV--IAPDVI--SSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDII 408 (769)
Q Consensus 333 l~~L~~L~l~~~~~l~~--~~~~~~--~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 408 (769)
+++|++|++++|..... ++.. + +.+++|++|++++|.+..... .....+..+++|+.|++++|....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNAGMETPSG--------VCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTSCCCCHHH--------HHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CCCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCCcCcchHH--------HHHHHHhcCCCCCEEECCCCcCCc
Confidence 88888888887763332 2223 3 677888888887776651100 000223566778888887776544
Q ss_pred CCcccccccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccC
Q 004197 409 LPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQ 488 (769)
Q Consensus 409 ~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 488 (769)
.++... ...+++|+.|+++.+..+.++..+. ++|+.|+++++.
T Consensus 243 ~~~~~~-----------------------------------~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 243 AAGAPS-----------------------------------CDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp SCCCSC-----------------------------------CCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC
T ss_pred ccchhh-----------------------------------hhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC
Confidence 331100 1123455566666555443333233 677777777665
Q ss_pred CcccccccCCCCCCCCCceEEEecCC
Q 004197 489 GVKNVLFDLDTNGLPQLKLLWVQNNP 514 (769)
Q Consensus 489 ~~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (769)
.... +. ...+++|++|++++++
T Consensus 286 l~~~-p~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 286 LDRN-PS---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSC-CC---TTTSCEEEEEECTTCT
T ss_pred CCCC-hh---HhhCCCCCEEeccCCC
Confidence 4332 22 5567888888887774
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.9e-16 Score=173.06 Aligned_cols=196 Identities=15% Similarity=0.074 Sum_probs=118.1
Q ss_pred HhhhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCc
Q 004197 258 NFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLR 337 (769)
Q Consensus 258 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 337 (769)
..|..+++|++|+|++|.++..++ ++.+++|++|++++|.++.+ |. .++|++|++++|.+..+|. ..+++|+
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~~----~~~L~~L~L~~N~l~~~~~--~~l~~L~ 123 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-LV----GPSIETLHAANNNISRVSC--SRGQGKK 123 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE-EE----CTTCCEEECCSSCCCCEEE--CCCSSCE
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC-CC----CCCcCEEECcCCcCCCCCc--cccCCCC
Confidence 445667777777777776665443 66777777777777766666 32 2667777777776666554 2456677
Q ss_pred EEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhc-CCCCccEEEEEeeCCCCCCcccccc
Q 004197 338 LLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELM-LLPWLTTIEINIKNDIILPEGFFAR 416 (769)
Q Consensus 338 ~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~ 416 (769)
+|++++|. +..+++..++.+++|++|++++|.+....+ ..+. .+++|+.|++++|....++..
T Consensus 124 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~l~~~l~~L~~L~Ls~N~l~~~~~~---- 187 (487)
T 3oja_A 124 NIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-----------AELAASSDTLEHLNLQYNFIYDVKGQ---- 187 (487)
T ss_dssp EEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEG-----------GGGGGGTTTCCEEECTTSCCCEEECC----
T ss_pred EEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcCh-----------HHHhhhCCcccEEecCCCcccccccc----
Confidence 77777665 444433336667777777777766654333 3333 566677777666654333221
Q ss_pred cccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCCccccccc
Q 004197 417 KLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFD 496 (769)
Q Consensus 417 ~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 496 (769)
..+++|+.|+++.+.....+..+..+++|+.|++.++.... ++..
T Consensus 188 ----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~ 232 (487)
T 3oja_A 188 ----------------------------------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKA 232 (487)
T ss_dssp ----------------------------------CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred ----------------------------------ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchh
Confidence 12445566666665555444445666777777777765442 3332
Q ss_pred CCCCCCCCCceEEEecCC
Q 004197 497 LDTNGLPQLKLLWVQNNP 514 (769)
Q Consensus 497 ~~~~~l~~L~~L~l~~~~ 514 (769)
++.+++|+.|++.+++
T Consensus 233 --l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 233 --LRFSQNLEHFDLRGNG 248 (487)
T ss_dssp --CCCCTTCCEEECTTCC
T ss_pred --hccCCCCCEEEcCCCC
Confidence 4567788888887775
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=5e-16 Score=157.48 Aligned_cols=106 Identities=24% Similarity=0.302 Sum_probs=51.3
Q ss_pred CcccEEEecCcccCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEcc
Q 004197 264 KKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLT 342 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 342 (769)
+++++|++++|.++.+ |..+..+++|++|++++|.++.+ +.. +.+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence 3445555555555433 23444555555555555555544 222 44555555555555555555444555555555555
Q ss_pred CCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 343 DCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 343 ~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
+|. ++.+|.+.++.+++|++|++++|.+.
T Consensus 109 ~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 109 FNR-LTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp SSC-CCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CCc-CcccCHHHHcCCCCCCEEECCCCCCC
Confidence 543 44444333445555555555554443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=3.3e-16 Score=157.63 Aligned_cols=154 Identities=27% Similarity=0.344 Sum_probs=72.2
Q ss_pred cccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCc-cccccCCc
Q 004197 212 DALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPS-SIDLLVNL 289 (769)
Q Consensus 212 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L 289 (769)
...++++.|.+.++.+..++....+++|+ +.+.++... .++ .+..+++|++|++++|.++.+|. .++.+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~-~~~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DIS-----ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC-CCG-----GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCC-Cch-----hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 34566777777777666555433444444 444443321 111 23444445555555444444332 23444445
Q ss_pred cEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccC
Q 004197 290 RTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGN 368 (769)
Q Consensus 290 ~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~ 368 (769)
++|++++|.++.+++..++++++|++|++++|.++.+|.. ++++++|++|++++|. ++.++...++.+++|++|++++
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCC
Confidence 5555555444444333344444555555554444444332 3444445555544443 3344433334444444444444
Q ss_pred Cccc
Q 004197 369 CSIE 372 (769)
Q Consensus 369 ~~~~ 372 (769)
|.+.
T Consensus 191 N~l~ 194 (272)
T 3rfs_A 191 NQLK 194 (272)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 4443
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=4.8e-16 Score=157.07 Aligned_cols=202 Identities=21% Similarity=0.173 Sum_probs=147.0
Q ss_pred CcccEEEecCcccCCCCc-cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccc-hhhccCCCCcEEEc
Q 004197 264 KKLRVLDLTRMRLLSLPS-SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLP-KALGQLTKLRLLDL 341 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l 341 (769)
++|++|++++|.++.++. .+..+++|++|++++|.++.+++..++++++|++|++++|.+..++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 579999999999998765 7899999999999999999986678999999999999999999776 56899999999999
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCCcccc-ceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccc--cccc
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNCSIEW-EVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFF--ARKL 418 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~-~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L 418 (769)
++|. +..++...++.+++|++|++++|.+.. .++ ..+..+++|+.|++++|....++.... ..+|
T Consensus 108 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 108 VETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLP-----------EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-----------GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CCCC-ccccCchhcccCCCCCEEECcCCccceecCc-----------hhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 9986 666766448899999999999998763 123 678889999999999887665543211 1222
Q ss_pred cEEEEEEcCCccccccccccccccccccccccCcccccc-eEEeeccccccccccccccccccEEEecccCCcccccccC
Q 004197 419 ERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLR-ELKLKLDFTDVRSMKLQAINKVEYLWLDKLQGVKNVLFDL 497 (769)
Q Consensus 419 ~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 497 (769)
+ .+. .++++.+.....+.......+|+.|++.++... ..+..
T Consensus 176 ~-----------------------------------~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~- 218 (276)
T 2z62_A 176 P-----------------------------------LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDG- 218 (276)
T ss_dssp T-----------------------------------TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTT-
T ss_pred c-----------------------------------ccceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHh-
Confidence 2 111 455555544433333222336777777766533 22221
Q ss_pred CCCCCCCCceEEEecCC
Q 004197 498 DTNGLPQLKLLWVQNNP 514 (769)
Q Consensus 498 ~~~~l~~L~~L~l~~~~ 514 (769)
.+..+++|+.|++++++
T Consensus 219 ~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTTTCCSCCEEECCSSC
T ss_pred HhcccccccEEEccCCc
Confidence 13557777777777664
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=8.1e-16 Score=154.76 Aligned_cols=170 Identities=21% Similarity=0.274 Sum_probs=92.5
Q ss_pred CCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCC
Q 004197 235 ESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNL 313 (769)
Q Consensus 235 ~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L 313 (769)
.+++|+ +.+.++.. ..++ .+..+++|++|++++|.++.++ .++.+++|++|++++|.++.+++..++++++|
T Consensus 39 ~l~~L~~L~l~~~~i-~~~~-----~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANNSDI-KSVQ-----GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECTTSCC-CCCT-----TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccceeeeeeCCCCc-cccc-----ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 455555 55554432 2222 2455666666666666665543 45566666666666666665544445666666
Q ss_pred cEEEeecCCCcccchh-hccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcC
Q 004197 314 EILSFWRSDIVHLPKA-LGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELML 392 (769)
Q Consensus 314 ~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 392 (769)
++|++++|.+..+|.. ++++++|++|++++|. ++.++...++.+++|++|++++|.+....+ ..++.
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~ 179 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPE-----------GVFDK 179 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------TTTTT
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCH-----------HHhcC
Confidence 6666666666555443 4556666666666653 555555445566666666666665542211 33455
Q ss_pred CCCccEEEEEeeCCCCCCcccc--cccccEEEE
Q 004197 393 LPWLTTIEINIKNDIILPEGFF--ARKLERFKI 423 (769)
Q Consensus 393 l~~L~~L~l~~~~~~~~~~~~~--~~~L~~l~i 423 (769)
+++|+.|+++.|....++.... .++|+.+.+
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence 5666666666665555544322 455555543
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=1e-15 Score=156.81 Aligned_cols=185 Identities=19% Similarity=0.204 Sum_probs=137.9
Q ss_pred cccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCcc
Q 004197 212 DALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLR 290 (769)
Q Consensus 212 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~ 290 (769)
...+++++|++.++.+..++....+++|+ |.+.++.. ..++ . +..+++|++|++++|.++.++ .+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i-~~~~---~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI-TDLA---P--LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC-CCCG---G--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC-CCCh---h--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 34678899999998888887666788888 88876643 3444 3 678888888888888888775 688888888
Q ss_pred EEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCc
Q 004197 291 TLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCS 370 (769)
Q Consensus 291 ~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~ 370 (769)
+|++++|.++.+ |. ++.+++|++|++++|.+..+|. ++.+++|++|++++|. +..++. ++.+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCc
Confidence 888888888888 43 8888888888888888887775 7888888888888875 666665 7788888888888887
Q ss_pred cccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccccccccEEE
Q 004197 371 IEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFFARKLERFK 422 (769)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 422 (769)
+.. +..+..+++|+.|++++|....+++....++|+.+.
T Consensus 185 l~~-------------~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 185 ISD-------------ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVT 223 (308)
T ss_dssp CCC-------------CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEE
T ss_pred cCc-------------ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEE
Confidence 651 123677888888888887766554322234444433
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=1e-15 Score=150.83 Aligned_cols=139 Identities=20% Similarity=0.257 Sum_probs=76.1
Q ss_pred CCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcc-cCCCCc-cccccCCccEEEecc-cccccc
Q 004197 227 INDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMR-LLSLPS-SIDLLVNLRTLCLDQ-SILGDI 302 (769)
Q Consensus 227 ~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~-~i~~l~~L~~L~L~~-~~l~~l 302 (769)
+..+|. -.++++ +.+.++. ...+| ...|..+++|++|++++|. ++.+|. .+..+++|++|++++ |.++.+
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~-l~~i~---~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETH-LRTIP---SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCC-CSEEC---TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccccCC--CCCcccEEEEeCCc-ceEEC---HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 455554 223455 5555443 22333 3445556666666666664 555543 455666666666665 556655
Q ss_pred ChhhhhccCCCcEEEeecCCCcccchhhccCCCCc---EEEccCCcCccccChhhhcCCCCcc-EEEccCCccc
Q 004197 303 DIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLR---LLDLTDCFHLKVIAPDVISSLIRLE-ELYMGNCSIE 372 (769)
Q Consensus 303 ~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~l~~~~~~~~~~L~~L~-~L~l~~~~~~ 372 (769)
++..++++++|++|++++|.++.+|. +..+++|+ +|++++|..++.+|...++.+++|+ +|++++|.+.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 44455566666666666666655554 55555555 6666665335555554455566666 6666555444
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=3e-15 Score=153.39 Aligned_cols=188 Identities=22% Similarity=0.258 Sum_probs=159.0
Q ss_pred EEEeCCcccccCCccccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCccc
Q 004197 198 FAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRL 276 (769)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i 276 (769)
+...+..+..++.....+++++|++++|.+..++....+++|+ |.+.++.. ..++ .+..+++|++|++++|.+
T Consensus 46 L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l-~~~~-----~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL-KNVS-----AIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC-SCCG-----GGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC-CCch-----hhcCCCCCCEEECCCCCC
Confidence 4455555666666666789999999999998888766899999 99988763 3343 368999999999999999
Q ss_pred CCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhc
Q 004197 277 LSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVIS 356 (769)
Q Consensus 277 ~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~ 356 (769)
+.+|. +..+++|++|++++|.++.+ +. ++++++|++|++++|.+..+|. +.++++|++|++++|. +..++. +.
T Consensus 120 ~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~ 192 (308)
T 1h6u_A 120 TDVTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LA 192 (308)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GG
T ss_pred CCchh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hc
Confidence 98875 99999999999999999999 44 9999999999999999999887 9999999999999986 777776 88
Q ss_pred CCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCc
Q 004197 357 SLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPE 411 (769)
Q Consensus 357 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 411 (769)
.+++|++|++++|.+.. +..+..+++|+.|++++|.....|.
T Consensus 193 ~l~~L~~L~L~~N~l~~-------------~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 193 SLPNLIEVHLKNNQISD-------------VSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp GCTTCCEEECTTSCCCB-------------CGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCCCEEEccCCccCc-------------cccccCCCCCCEEEccCCeeecCCe
Confidence 99999999999998761 1247889999999999998655544
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=1.4e-15 Score=150.97 Aligned_cols=174 Identities=22% Similarity=0.250 Sum_probs=130.8
Q ss_pred ceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEe
Q 004197 217 YFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCL 294 (769)
Q Consensus 217 lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L 294 (769)
.++++++++.+..+|.... +.++ +.+.++... .++ ...|.++++|++|++++|.++.++ ..+..+++|++|++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~-~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA-TLS---DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC-CCC---TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CeEEecCCCCccccCCCCC-CCCCEEEccCCCcC-ccC---HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4556666666666664332 4566 666555433 233 345778889999999999888764 45788899999999
Q ss_pred ccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCcccc
Q 004197 295 DQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEW 373 (769)
Q Consensus 295 ~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~ 373 (769)
++|.++.+++..++.+++|++|++++|.++.+|.. +..+++|++|++++|. ++.+|...++.+++|++|++++|.+..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99998888667788899999999999988888765 5788999999998875 777877658888999999998887763
Q ss_pred ceeccccccccCCchhhcCCCCccEEEEEeeCCC
Q 004197 374 EVERVNSERSNASLDELMLLPWLTTIEINIKNDI 407 (769)
Q Consensus 374 ~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 407 (769)
..+ ..+..+++|+.|++++|...
T Consensus 170 ~~~-----------~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 VPH-----------GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCT-----------TTTTTCTTCCEEECCSCCBC
T ss_pred cCH-----------HHHhCCCCCCEEEeeCCcee
Confidence 332 46778888899988887643
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=2.4e-15 Score=164.33 Aligned_cols=122 Identities=13% Similarity=0.179 Sum_probs=81.4
Q ss_pred CCcccEEEecCcccCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEc
Q 004197 263 TKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDL 341 (769)
Q Consensus 263 l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 341 (769)
+++|++|+|++|.++.+ |..++.+++|++|+|++|.++.+ +. ++.+++|++|++++|.+..+|. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 34788888888877765 35677788888888888877766 33 7777788888888877776653 377777777
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeC
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKN 405 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 405 (769)
++|. +..++.. .+++|++|++++|.+....+ ..++.+++|+.|++++|.
T Consensus 107 ~~N~-l~~~~~~---~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 107 ANNN-ISRVSCS---RGQGKKNIYLANNKITMLRD-----------LDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp CSSC-CCCEEEC---CCSSCEEEECCSSCCCSGGG-----------BCGGGGSSEEEEECTTSC
T ss_pred cCCc-CCCCCcc---ccCCCCEEECCCCCCCCCCc-----------hhhcCCCCCCEEECCCCC
Confidence 7765 5555432 45677777777776653333 344555666666655543
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=4.6e-15 Score=150.50 Aligned_cols=173 Identities=26% Similarity=0.323 Sum_probs=145.4
Q ss_pred cccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCcc
Q 004197 212 DALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLR 290 (769)
Q Consensus 212 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~ 290 (769)
...+++++|+++++.+..++....+++|+ |.+.++... .++ . +.++++|++|++++|.++.+|. ++.+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~-~~~---~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIK---P--LANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCG---G--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC-CCc---c--cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 45678999999999998888766899999 888877543 344 2 6899999999999999988764 89999999
Q ss_pred EEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCc
Q 004197 291 TLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCS 370 (769)
Q Consensus 291 ~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~ 370 (769)
+|++++|.++.+ ..++.+++|++|++++|.+..+ ..+.++++|++|++++|. +..++. ++.+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCc
Confidence 999999999988 5789999999999999999888 578999999999999986 777765 8899999999999987
Q ss_pred cccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCC
Q 004197 371 IEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILP 410 (769)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 410 (769)
+.. +..+..+++|+.|++++|.....|
T Consensus 190 i~~-------------l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 190 ISD-------------LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCB-------------CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred CCC-------------ChhhccCCCCCEEECcCCcccCCc
Confidence 761 245888999999999998755443
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=7.6e-15 Score=145.74 Aligned_cols=169 Identities=19% Similarity=0.255 Sum_probs=144.6
Q ss_pred EEEeCCcccccCCccccCcceEEEeecCCCCCCCC--ccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCc
Q 004197 198 FAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPE--VLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRM 274 (769)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~ 274 (769)
+...+..+..+|. ..++.+++|++++|.+..++. ...+++|+ |.+.++... .++ ...|..+++|++|++++|
T Consensus 19 l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~---~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 19 VDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLS---AGVFDDLTELGTLGLANN 93 (251)
T ss_dssp EECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCC---TTTTTTCTTCCEEECTTS
T ss_pred EecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccC---HhHhccCCcCCEEECCCC
Confidence 5556667777775 466899999999999987764 33799999 999887544 444 566789999999999999
Q ss_pred ccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEccCCcCccccCh
Q 004197 275 RLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCFHLKVIAP 352 (769)
Q Consensus 275 ~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~ 352 (769)
.++.+| ..+..+++|++|++++|.++.+++..++++++|++|++++|.++.+|. .++.+++|++|++++|. +..++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCH
Confidence 999876 457899999999999999999966668999999999999999999887 58999999999999986 778887
Q ss_pred hhhcCCCCccEEEccCCccc
Q 004197 353 DVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 353 ~~~~~L~~L~~L~l~~~~~~ 372 (769)
..+..+++|++|++++|.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBC
T ss_pred HHHhCCCCCCEEEeeCCcee
Confidence 66899999999999999876
No 87
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=2.6e-15 Score=154.36 Aligned_cols=241 Identities=17% Similarity=0.132 Sum_probs=158.3
Q ss_pred CcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccC--CCCcccc-------ccCCccEEEecccccc-ccChhh
Q 004197 238 QLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLL--SLPSSID-------LLVNLRTLCLDQSILG-DIDIAI 306 (769)
Q Consensus 238 ~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~-------~l~~L~~L~L~~~~l~-~l~p~~ 306 (769)
+|+ +.+.++.. .+| ..+... |++|+++++.+. .+|..+. .+.+|++|++++|.++ .+ |..
T Consensus 44 ~L~~l~l~~n~l--~~p---~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~ 114 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADL---GQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA-PPP 114 (312)
T ss_dssp ECTTHHHHCCTT--CCC---HHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC-CCC
T ss_pred CceeEeeccccc--ccH---HHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh-HHH
Confidence 344 44444444 556 444433 788888888775 4666555 6888888888888877 45 666
Q ss_pred h--hccCCCcEEEeecCCCcccchhhccC-----CCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccc
Q 004197 307 I--GKLGNLEILSFWRSDIVHLPKALGQL-----TKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVN 379 (769)
Q Consensus 307 i--~~L~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~ 379 (769)
+ +.+++|++|++++|.+..+|..++.+ ++|++|++++|. +..++...++++++|++|++++|.+.+..+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 190 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERG--- 190 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHH---
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchH---
Confidence 5 88888888888888888778777777 888888888876 666665448888888888888887553211
Q ss_pred cccccCCchhh--cCCCCccEEEEEeeCCCCCCcccccccccEEEEEEcCCccccccccccccccccccccccCcccccc
Q 004197 380 SERSNASLDEL--MLLPWLTTIEINIKNDIILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLR 457 (769)
Q Consensus 380 ~~~~~~~l~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 457 (769)
....+ ..+++|+.|++++|....++.. + .+ ....+++|+
T Consensus 191 ------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------~---~~--------~~~~l~~L~ 231 (312)
T 1wwl_A 191 ------LISALCPLKFPTLQVLALRNAGMETPSGV----------------------C---SA--------LAAARVQLQ 231 (312)
T ss_dssp ------HHHHSCTTSCTTCCEEECTTSCCCCHHHH----------------------H---HH--------HHHTTCCCS
T ss_pred ------HHHHHHhccCCCCCEEECCCCcCcchHHH----------------------H---HH--------HHhcCCCCC
Confidence 01233 7788888888887765432211 0 00 012345677
Q ss_pred eEEeecccccccc-cc-ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccc
Q 004197 458 ELKLKLDFTDVRS-MK-LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLE 535 (769)
Q Consensus 458 ~l~l~~~~~~~~~-~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~ 535 (769)
.|+++.+...... .. +..+++|+.|++.++... .++..+ +++|++|+++++. ++.+ .....+++|+
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~----~~~L~~L~Ls~N~-l~~~------p~~~~l~~L~ 299 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL----PAKLSVLDLSYNR-LDRN------PSPDELPQVG 299 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC----CSEEEEEECCSSC-CCSC------CCTTTSCEEE
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc----cCCceEEECCCCC-CCCC------hhHhhCCCCC
Confidence 7777777665544 23 566788888888887654 333321 2788888888774 2221 1245677888
Q ss_pred eeecccc
Q 004197 536 SLTLHNL 542 (769)
Q Consensus 536 ~L~l~~~ 542 (769)
.|.+.+.
T Consensus 300 ~L~L~~N 306 (312)
T 1wwl_A 300 NLSLKGN 306 (312)
T ss_dssp EEECTTC
T ss_pred EEeccCC
Confidence 8888764
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=1.9e-14 Score=150.39 Aligned_cols=104 Identities=22% Similarity=0.332 Sum_probs=82.9
Q ss_pred cEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCc-ccch-hhccCCCCcEEEccCC
Q 004197 267 RVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIV-HLPK-ALGQLTKLRLLDLTDC 344 (769)
Q Consensus 267 r~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~-~lp~-~i~~l~~L~~L~l~~~ 344 (769)
++++.++++++++|..+ ..++++|+|++|.|+.+++..|+++++|++|++++|.+. .+|. .+.++++|+++....+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 67888899999999776 368999999999999995567899999999999999864 4664 4678888887655554
Q ss_pred cCccccChhhhcCCCCccEEEccCCccc
Q 004197 345 FHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 345 ~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
..+..++++.++.+++|++|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred CcccccCchhhhhccccccccccccccc
Confidence 5588887776788888888888887765
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=1.8e-14 Score=150.67 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=79.5
Q ss_pred EEEeCCcccccCCccccCcceEEEeecCCCCCCCCccCCCCcEEEecCCCCccccCCcchHhhhcCCcccEEEecCcccC
Q 004197 198 FAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPEVLESPQLEFLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLL 277 (769)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lrl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~ 277 (769)
+...+.+++++|. .+++++++|++++|.+..++ .+.|.++++|++|+|++|.+.
T Consensus 14 v~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~-------------------------~~~f~~l~~L~~L~Ls~N~i~ 67 (350)
T 4ay9_X 14 FLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQ-------------------------KGAFSGFGDLEKIEISQNDVL 67 (350)
T ss_dssp EEEESTTCCSCCT-TCCTTCSEEEEESCCCSEEC-------------------------TTSSTTCTTCCEEEEECCTTC
T ss_pred EEecCCCCCccCc-CcCCCCCEEEccCCcCCCcC-------------------------HHHHcCCCCCCEEECcCCCCC
Confidence 3445566666665 45667778888877776665 334455555555555555543
Q ss_pred -CCC-ccccccCCccE-EEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEccCCcCccccChh
Q 004197 278 -SLP-SSIDLLVNLRT-LCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCFHLKVIAPD 353 (769)
Q Consensus 278 -~lp-~~i~~l~~L~~-L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~ 353 (769)
.+| ..|.++++|++ +.+.+|.++.++|..++++++|++|++++|.+..+|. .+....++..|++.++..+..++..
T Consensus 68 ~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc
Confidence 233 23455555443 3334445555544555555555555555555554443 2334444555555554445555544
Q ss_pred hhcCCC-CccEEEccCCccc
Q 004197 354 VISSLI-RLEELYMGNCSIE 372 (769)
Q Consensus 354 ~~~~L~-~L~~L~l~~~~~~ 372 (769)
.+..+. .++.|++++|.+.
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCC
T ss_pred chhhcchhhhhhcccccccc
Confidence 344432 4555555555543
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=2.1e-15 Score=157.28 Aligned_cols=209 Identities=15% Similarity=0.158 Sum_probs=141.5
Q ss_pred HhhhcC--CcccEEEecCcccCCCCccccccCCccEEEeccccccc--cChhhhhccCCCcEEEeecCCCc-ccchhhcc
Q 004197 258 NFFKRT--KKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGD--IDIAIIGKLGNLEILSFWRSDIV-HLPKALGQ 332 (769)
Q Consensus 258 ~~~~~l--~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~--l~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~ 332 (769)
..+..+ +++++|+++++.+...+..+..+++|++|++++|.+.. + |..++.+++|++|++++|.+. ..|..+++
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL-HGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHH-HHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHH-HHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 345556 78999999999888776667788999999999998763 6 788888999999999998877 56778888
Q ss_pred CCCCcEEEccCCcCccc--cChhhhcCCCCccEEEccCC-ccccceeccccccccCCchhhcCCC-CccEEEEEeeCCCC
Q 004197 333 LTKLRLLDLTDCFHLKV--IAPDVISSLIRLEELYMGNC-SIEWEVERVNSERSNASLDELMLLP-WLTTIEINIKNDII 408 (769)
Q Consensus 333 l~~L~~L~l~~~~~l~~--~~~~~~~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~~l~-~L~~L~l~~~~~~~ 408 (769)
+++|++|++++|..++. ++.. ++++++|++|++++| .+... .....+..++ +|+.|+++++...
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~----------~~~~~~~~l~~~L~~L~l~~~~~~- 208 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK----------HVQVAVAHVSETITQLNLSGYRKN- 208 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH----------HHHHHHHHSCTTCCEEECCSCGGG-
T ss_pred CCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH----------HHHHHHHhcccCCCEEEeCCCccc-
Confidence 99999999998855653 4444 778889999998888 55421 0114466777 7888877765210
Q ss_pred CCcccccccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeecccccccccc--ccccccccEEEecc
Q 004197 409 LPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMK--LQAINKVEYLWLDK 486 (769)
Q Consensus 409 ~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~--l~~~~~L~~L~l~~ 486 (769)
.+....+ +..+++|+.|++.+
T Consensus 209 ---------------------------------------------------------~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 209 ---------------------------------------------------------LQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp ---------------------------------------------------------SCHHHHHHHHHHCTTCSEEECTT
T ss_pred ---------------------------------------------------------CCHHHHHHHHhhCCCCCEEeCCC
Confidence 0000000 24456677777777
Q ss_pred cCCccc-ccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeecccc
Q 004197 487 LQGVKN-VLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNL 542 (769)
Q Consensus 487 ~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~ 542 (769)
+..++. .... +..+++|+.|++++|..+.. ........+++|+.|.+.+|
T Consensus 232 ~~~l~~~~~~~--l~~l~~L~~L~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 232 SVMLKNDCFQE--FFQLNYLQHLSLSRCYDIIP----ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCGGGGGG--GGGCTTCCEEECTTCTTCCG----GGGGGGGGCTTCCEEECTTS
T ss_pred CCcCCHHHHHH--HhCCCCCCEeeCCCCCCCCH----HHHHHHhcCCCCCEEeccCc
Confidence 664332 2222 45567888888887753221 11123455788888888877
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.8e-14 Score=137.00 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=93.5
Q ss_pred cccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCC-CCccccccCCc
Q 004197 212 DALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLS-LPSSIDLLVNL 289 (769)
Q Consensus 212 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~L 289 (769)
...+++++|+++++.+..++....+++|+ +.+.++. ...++ .+..+++|++|++++|.++. .|..++.+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~-~~~~~-----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH-ATNYN-----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC-CSCCG-----GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCC-CCcch-----hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 34567889999988887777544666666 6666552 22221 34566666666666666663 45566666666
Q ss_pred cEEEeccccccccChhhhhccCCCcEEEeecCC-CcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccC
Q 004197 290 RTLCLDQSILGDIDIAIIGKLGNLEILSFWRSD-IVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGN 368 (769)
Q Consensus 290 ~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~ 368 (769)
++|++++|.++...|..++++++|++|++++|. +..+| .+..+++|++|++++|. +..++ . +..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~-l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-G-IEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-T-GGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-H-hccCCCCCEEEeeC
Confidence 666666666664225666666666666666665 66665 46666666666666654 55555 2 56666666666666
Q ss_pred Ccc
Q 004197 369 CSI 371 (769)
Q Consensus 369 ~~~ 371 (769)
|.+
T Consensus 191 N~i 193 (197)
T 4ezg_A 191 QTI 193 (197)
T ss_dssp C--
T ss_pred ccc
Confidence 554
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.9e-15 Score=155.30 Aligned_cols=203 Identities=15% Similarity=0.083 Sum_probs=117.9
Q ss_pred CCcccEEEecCcccC-CCCccc--cccCCccEEEeccccccccCh----hhhhccCCCcEEEeecCCCcccc-hhhccCC
Q 004197 263 TKKLRVLDLTRMRLL-SLPSSI--DLLVNLRTLCLDQSILGDIDI----AIIGKLGNLEILSFWRSDIVHLP-KALGQLT 334 (769)
Q Consensus 263 l~~Lr~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~~~l~~l~p----~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~ 334 (769)
+++|++|++++|.+. ..|..+ +.+.+|++|++++|.++...| ..+..+++|++|++++|.+..+| ..+++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 455777777777776 345555 677777777777777664212 33456777777777777776554 4566777
Q ss_pred CCcEEEccCCcCccc--cC-hhhhcCCCCccEEEccCCccccceeccccccccCCch-hhcCCCCccEEEEEeeCCCCC-
Q 004197 335 KLRLLDLTDCFHLKV--IA-PDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLD-ELMLLPWLTTIEINIKNDIIL- 409 (769)
Q Consensus 335 ~L~~L~l~~~~~l~~--~~-~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~- 409 (769)
+|++|++++|..... ++ ...++.+++|++|++++|.+.. ++ .... .++.+++|+.|++++|.....
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~--------~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PT--------GVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HH--------HHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hH--------HHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 777777777652221 21 1113567777777777776641 11 0001 235667777777777765444
Q ss_pred CcccccccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccccccccccccEEEecccCC
Q 004197 410 PEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSMKLQAINKVEYLWLDKLQG 489 (769)
Q Consensus 410 ~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 489 (769)
|..+. . ...+++|+.|+++.+....++..+ +++|+.|+++++..
T Consensus 241 p~~~~-------------------------~---------~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l 284 (310)
T 4glp_A 241 NPSAP-------------------------R---------CMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRL 284 (310)
T ss_dssp CSCCS-------------------------S---------CCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCC
T ss_pred hhhHH-------------------------h---------ccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcC
Confidence 32211 0 111245555555555544332222 26777777776654
Q ss_pred cccccccCCCCCCCCCceEEEecCC
Q 004197 490 VKNVLFDLDTNGLPQLKLLWVQNNP 514 (769)
Q Consensus 490 ~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (769)
..- +. ...+++|+.|++++++
T Consensus 285 ~~~-~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 285 NRA-PQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSC-CC---TTSCCCCSCEECSSTT
T ss_pred CCC-ch---hhhCCCccEEECcCCC
Confidence 321 11 3567888888888775
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.3e-14 Score=139.57 Aligned_cols=115 Identities=25% Similarity=0.370 Sum_probs=87.0
Q ss_pred hHhhhcCCcccEEEecCcccCCCCcc-ccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCC
Q 004197 257 ENFFKRTKKLRVLDLTRMRLLSLPSS-IDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLT 334 (769)
Q Consensus 257 ~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~ 334 (769)
...|..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+++..++++++|++|++++|.+..+|.. +.+++
T Consensus 45 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 124 (208)
T 2o6s_A 45 NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT 124 (208)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC
Confidence 45567788888888888888777543 57788888888888888877555577888888888888888777654 57788
Q ss_pred CCcEEEccCCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 335 KLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 335 ~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
+|++|++++|. +..++...++.+++|++|++++|.+.
T Consensus 125 ~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 125 QLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence 88888888875 66677665777888888888777554
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=3.5e-14 Score=138.52 Aligned_cols=148 Identities=22% Similarity=0.265 Sum_probs=106.2
Q ss_pred EEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCc-cccccCCccEEEecc
Q 004197 219 AIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPS-SIDLLVNLRTLCLDQ 296 (769)
Q Consensus 219 ~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~ 296 (769)
.++.+++.+..+|... .++|+ |.+.++.... ++ ...|..+++|++|+|++|.+..+|. .+..+++|++|+|++
T Consensus 23 ~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~-~~---~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGI-PTNAQILYLHDNQITK-LE---PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSSCCCC-CC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeEccCCCcCccCCCC-CCCCCEEEcCCCccCc-cC---HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4555555555555422 24555 5555444332 22 3456778888888888888887764 457888888888888
Q ss_pred ccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 297 SILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 297 ~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
|.++.+++..++.+++|++|++++|.++.+|..+.++++|++|++++|. +..++...+..+++|++|++.+|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8888885556788888888888888888888888888888888888875 77777666778888888888887765
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=138.59 Aligned_cols=150 Identities=17% Similarity=0.289 Sum_probs=96.6
Q ss_pred eEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCc-cccccCCccEEEec
Q 004197 218 FAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPS-SIDLLVNLRTLCLD 295 (769)
Q Consensus 218 r~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~ 295 (769)
++++++++.+..+|... .+.++ |.+.++......+ .+.|..+++|++|++++|.++.++. .+..+.+|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEA---TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECC---CCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCc---hhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 46777777776666422 22334 5555444332223 3446677777777777777776543 57777777777777
Q ss_pred cccccccChhhhhccCCCcEEEeecCCCccc-chhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 296 QSILGDIDIAIIGKLGNLEILSFWRSDIVHL-PKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 296 ~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
+|.++.++|..++++++|++|++++|.++.+ |..+..+++|++|++++|. ++.+++..+..+++|++|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 7777777555677777777777777777765 4556777777777777765 55554444677777777777776654
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=2.6e-14 Score=138.31 Aligned_cols=148 Identities=24% Similarity=0.306 Sum_probs=96.1
Q ss_pred EEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEEecc
Q 004197 219 AIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQ 296 (769)
Q Consensus 219 ~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 296 (769)
.++..++.+..+|.... ++++ |.+.++.. ..++ ...|..+++|++|+|++|.++.+ |..+..+.+|++|+|++
T Consensus 15 ~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i-~~i~---~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP-ETITEIRLEQNTI-KVIP---PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEECTTSCCSSCCSSCC-TTCCEEECCSSCC-CEEC---TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EEEcCCCCcCcCCCccC-cCCCEEECCCCcC-CCcC---HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 44455555555543221 3344 44433322 2333 34566777777888877777765 66777777788888877
Q ss_pred ccccccChhhhhccCCCcEEEeecCCCccc-chhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 297 SILGDIDIAIIGKLGNLEILSFWRSDIVHL-PKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 297 ~~l~~l~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
|.++.+++..+.++++|++|++++|.+..+ |..+..+++|++|++++|. ++.++.+.+..+++|++|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777777445567777778888877777766 3457777777777777765 66666655777777777777777654
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=3.2e-14 Score=144.26 Aligned_cols=126 Identities=26% Similarity=0.304 Sum_probs=76.7
Q ss_pred hcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEE
Q 004197 261 KRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLD 340 (769)
Q Consensus 261 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 340 (769)
..+++|++|++++|.+..++ .+..+++|++|++++|.++.+ +. ++++++|++|++++|.+..+|. +.++++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 45566666666666666664 366666666666666666666 33 6666666666666666666543 66666666666
Q ss_pred ccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCC
Q 004197 341 LTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKND 406 (769)
Q Consensus 341 l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 406 (769)
+++|. +..++. ++.+++|++|++++|.+.. +..+..+++|+.|++++|..
T Consensus 119 L~~n~-i~~~~~--l~~l~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 119 LEHNG-ISDING--LVHLPQLESLYLGNNKITD-------------ITVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp CTTSC-CCCCGG--GGGCTTCCEEECCSSCCCC-------------CGGGGGCTTCSEEECCSSCC
T ss_pred CCCCc-CCCChh--hcCCCCCCEEEccCCcCCc-------------chhhccCCCCCEEEccCCcc
Confidence 66654 444432 5666666666666665541 13455566666666665543
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=3e-15 Score=156.14 Aligned_cols=223 Identities=17% Similarity=0.144 Sum_probs=159.9
Q ss_pred CCcccEEEecCcccCCCCcccccc--CCccEEEeccccccccChhhhhccCCCcEEEeecCCCcc--cchhhccCCCCcE
Q 004197 263 TKKLRVLDLTRMRLLSLPSSIDLL--VNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH--LPKALGQLTKLRL 338 (769)
Q Consensus 263 l~~Lr~L~L~~~~i~~lp~~i~~l--~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~ 338 (769)
-..++.++++++.+. |..+..+ .++++|+++++.+... +..+.++++|++|++++|.+.. +|..+.++++|++
T Consensus 46 ~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred chhheeeccccccCC--HHHHHhhhhccceEEEcCCcccccc-chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 345889999988776 5667777 8899999999998877 5557789999999999998763 7888899999999
Q ss_pred EEccCCcCcc-ccChhhhcCCCCccEEEccCC-cccc-ceeccccccccCCchhhcCCCCccEEEEEee-CCCCCCcccc
Q 004197 339 LDLTDCFHLK-VIAPDVISSLIRLEELYMGNC-SIEW-EVERVNSERSNASLDELMLLPWLTTIEINIK-NDIILPEGFF 414 (769)
Q Consensus 339 L~l~~~~~l~-~~~~~~~~~L~~L~~L~l~~~-~~~~-~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~-~~~~~~~~~~ 414 (769)
|++++|. +. ..+.. ++++++|++|++++| .+.. .++ ..+..+++|+.|+++++ ....
T Consensus 123 L~L~~~~-l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~-----------~~~~~~~~L~~L~l~~~~~l~~------ 183 (336)
T 2ast_B 123 LSLEGLR-LSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQ-----------TLLSSCSRLDELNLSWCFDFTE------ 183 (336)
T ss_dssp EECTTCB-CCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHH-----------HHHHHCTTCCEEECCCCTTCCH------
T ss_pred EeCcCcc-cCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHH-----------HHHhcCCCCCEEcCCCCCCcCh------
Confidence 9999986 44 44554 888999999999888 3431 122 34667788888887765 3211
Q ss_pred cccccEEEEEEcCCccccccccccccccccccccccCcccccceEEeeccccccccc-c-ccccc-cccEEEecccC-Cc
Q 004197 415 ARKLERFKISIGNESFMASLPVAKDWFRSRSHFLINNNRESLRELKLKLDFTDVRSM-K-LQAIN-KVEYLWLDKLQ-GV 490 (769)
Q Consensus 415 ~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~-l~~~~-~L~~L~l~~~~-~~ 490 (769)
... . +..++ +|++|++.++. ..
T Consensus 184 ------------------------------------------------------~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 184 ------------------------------------------------------KHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp ------------------------------------------------------HHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred ------------------------------------------------------HHHHHHHHhcccCCCEEEeCCCcccC
Confidence 101 1 35577 89999999885 23
Q ss_pred c--cccccCCCCCCCCCceEEEecCCCcceeccCccccccccCCccceeeccccccccccccccccccccCCccEEEEcC
Q 004197 491 K--NVLFDLDTNGLPQLKLLWVQNNPDFFCIVDSMEMVACDAFPLLESLTLHNLINMQRICIDRLKVESFNKLKTIKVEN 568 (769)
Q Consensus 491 ~--~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 568 (769)
+ ..+.. ...+|+|+.|++++|..+.. ........+++|+.|.+.+|..+..... .....+++|+.|++++
T Consensus 210 ~~~~l~~~--~~~~~~L~~L~l~~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 210 QKSDLSTL--VRRCPNLVHLDLSDSVMLKN----DCFQEFFQLNYLQHLSLSRCYDIIPETL--LELGEIPTLKTLQVFG 281 (336)
T ss_dssp CHHHHHHH--HHHCTTCSEEECTTCTTCCG----GGGGGGGGCTTCCEEECTTCTTCCGGGG--GGGGGCTTCCEEECTT
T ss_pred CHHHHHHH--HhhCCCCCEEeCCCCCcCCH----HHHHHHhCCCCCCEeeCCCCCCCCHHHH--HHHhcCCCCCEEeccC
Confidence 2 12221 45689999999999974432 1222456779999999999974433221 1245689999999999
Q ss_pred C
Q 004197 569 C 569 (769)
Q Consensus 569 c 569 (769)
|
T Consensus 282 ~ 282 (336)
T 2ast_B 282 I 282 (336)
T ss_dssp S
T ss_pred c
Confidence 9
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=2.2e-14 Score=159.64 Aligned_cols=175 Identities=26% Similarity=0.316 Sum_probs=148.4
Q ss_pred ccccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCc
Q 004197 211 ADALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNL 289 (769)
Q Consensus 211 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L 289 (769)
....+.++.|+++++.+..++....+++|+ |.+.++... .++ . +..+++|++|+|++|.+..+| .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~-~~~---~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIK---P--LTNLKNLGWLFLDENKIKDLS-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC-CCG---G--GGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC-CCh---h--hccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence 345678999999999998888777899999 999877543 344 2 689999999999999999877 78999999
Q ss_pred cEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCC
Q 004197 290 RTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNC 369 (769)
Q Consensus 290 ~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~ 369 (769)
++|+|++|.+..+ ..++.+++|+.|++++|.+..+ ..+..+++|++|++++|. +..+++ +..+++|+.|++++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCC
Confidence 9999999999988 4689999999999999999988 578999999999999986 666665 889999999999999
Q ss_pred ccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCc
Q 004197 370 SIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPE 411 (769)
Q Consensus 370 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 411 (769)
.+.. +..+..+++|+.|++++|.....|.
T Consensus 186 ~i~~-------------l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 186 HISD-------------LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCCB-------------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCC-------------ChHHccCCCCCEEEccCCcCcCCcc
Confidence 7761 2468889999999999887555443
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=1.3e-14 Score=154.33 Aligned_cols=139 Identities=16% Similarity=0.111 Sum_probs=88.4
Q ss_pred HhhhcCCcccEEEecCcccCC-----CCccccccCCccEEEecccccc----ccChhhh-------hccCCCcEEEeecC
Q 004197 258 NFFKRTKKLRVLDLTRMRLLS-----LPSSIDLLVNLRTLCLDQSILG----DIDIAII-------GKLGNLEILSFWRS 321 (769)
Q Consensus 258 ~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~l~----~l~p~~i-------~~L~~L~~L~l~~~ 321 (769)
..+..+++|++|++++|.+.. ++..+..+++|++|+|++|.+. .+ |..+ .++++|++|++++|
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~-~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI-PEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGS-HHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccch-hHHHHHHHHHHhhCCcccEEECCCC
Confidence 345677788888888887763 3344667788888888876544 23 4333 57788888888888
Q ss_pred CCcc-----cchhhccCCCCcEEEccCCcCccccChhh----hcCC---------CCccEEEccCCccc-cceecccccc
Q 004197 322 DIVH-----LPKALGQLTKLRLLDLTDCFHLKVIAPDV----ISSL---------IRLEELYMGNCSIE-WEVERVNSER 382 (769)
Q Consensus 322 ~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~~~~~~----~~~L---------~~L~~L~l~~~~~~-~~~~~~~~~~ 382 (769)
.+.. +|..+.++++|++|++++|. ++..+... +..+ ++|++|++++|.+. ..++
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~------ 177 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK------ 177 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH------
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH------
Confidence 7765 67777788888888888776 43222111 2333 77888888777664 1111
Q ss_pred ccCCchhhcCCCCccEEEEEeeCC
Q 004197 383 SNASLDELMLLPWLTTIEINIKND 406 (769)
Q Consensus 383 ~~~~l~~l~~l~~L~~L~l~~~~~ 406 (769)
.....+..+++|+.|++++|..
T Consensus 178 --~l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 178 --EWAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp --HHHHHHHHCTTCCEEECCSSCC
T ss_pred --HHHHHHHhCCCcCEEECcCCCC
Confidence 1113456677777777776643
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=7.1e-14 Score=155.57 Aligned_cols=127 Identities=23% Similarity=0.224 Sum_probs=70.2
Q ss_pred hhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEE
Q 004197 260 FKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLL 339 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 339 (769)
+..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+..+ | .++.+++|++|++++|.+..+| .+..+++|+.|
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESL 136 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEE
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEE
Confidence 4556666666666666655544 55666666666666665555 2 4556666666666666555543 35556666666
Q ss_pred EccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCC
Q 004197 340 DLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKND 406 (769)
Q Consensus 340 ~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 406 (769)
++++|. +..++ . ++.+++|+.|++++|.+... ..+..+++|+.|+++.|..
T Consensus 137 ~Ls~N~-l~~l~-~-l~~l~~L~~L~Ls~N~l~~~-------------~~l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 137 YLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISDI-------------VPLAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp ECCSSC-CCCCG-G-GGSCTTCSEEECCSSCCCCC-------------GGGTTCTTCCEEECCSSCC
T ss_pred ECCCCc-cCCch-h-hcccCCCCEEECcCCcCCCc-------------hhhccCCCCCEEECcCCCC
Confidence 666554 44442 2 55666666666655554310 1145555566665555543
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=3.8e-14 Score=141.34 Aligned_cols=167 Identities=19% Similarity=0.167 Sum_probs=121.4
Q ss_pred ceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEEEec
Q 004197 217 YFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLD 295 (769)
Q Consensus 217 lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 295 (769)
+..+.+..+.+..++....+++|+ +.+.++. ...++ .+..+++|++|++++|.++.+|. ++.+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~-i~~l~-----~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN-IQSLA-----GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSC-CCCCT-----TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCC-cccch-----HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 334444444444444333555555 5555443 22333 25788899999999998888876 8889999999999
Q ss_pred cccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccce
Q 004197 296 QSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEV 375 (769)
Q Consensus 296 ~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~ 375 (769)
+|.++.+ |.. .. ++|++|++++|.++.+| .+.++++|++|++++|. ++.++. ++.+++|++|++++|.+..
T Consensus 94 ~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~-- 164 (263)
T 1xeu_A 94 RNRLKNL-NGI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN-- 164 (263)
T ss_dssp SSCCSCC-TTC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB--
T ss_pred CCccCCc-Ccc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc--
Confidence 9998888 443 33 88999999999888876 58889999999998876 777763 8889999999998887761
Q ss_pred eccccccccCCchhhcCCCCccEEEEEeeCCCCCC
Q 004197 376 ERVNSERSNASLDELMLLPWLTTIEINIKNDIILP 410 (769)
Q Consensus 376 ~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~ 410 (769)
+..+..+++|+.|+++++.....|
T Consensus 165 -----------~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 -----------TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -----------CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred -----------hHHhccCCCCCEEeCCCCcccCCc
Confidence 156778888999999888755443
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=1.4e-13 Score=130.91 Aligned_cols=104 Identities=22% Similarity=0.317 Sum_probs=48.8
Q ss_pred cCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcc-cchhhccCCCCcEEE
Q 004197 262 RTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH-LPKALGQLTKLRLLD 340 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~ 340 (769)
.+++|++|++++|.++.+| .+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. .|..++++++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3444555555555554444 344555555555555544443 244445555555555554442 344444555555555
Q ss_pred ccCCcCccc-cChhhhcCCCCccEEEccCCc
Q 004197 341 LTDCFHLKV-IAPDVISSLIRLEELYMGNCS 370 (769)
Q Consensus 341 l~~~~~l~~-~~~~~~~~L~~L~~L~l~~~~ 370 (769)
+++|. +.. .+.. ++.+++|++|++++|.
T Consensus 119 Ls~n~-i~~~~~~~-l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 119 ISHSA-HDDSILTK-INTLPKVNSIDLSYNG 147 (197)
T ss_dssp CCSSB-CBGGGHHH-HTTCSSCCEEECCSCT
T ss_pred ecCCc-cCcHhHHH-HhhCCCCCEEEccCCC
Confidence 55543 222 2222 4445555555554443
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=7.3e-14 Score=143.46 Aligned_cols=155 Identities=15% Similarity=0.116 Sum_probs=79.3
Q ss_pred cceEEEeecCCCCC-CCCc---cCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCC-ccccccCCc
Q 004197 216 KYFAIFLKDSIIND-IPEV---LESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNL 289 (769)
Q Consensus 216 ~lr~L~l~~~~~~~-l~~~---~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L 289 (769)
++++|++++|.+.. .+.. ..+++|+ +.+.++......+......+..+++|++|++++|.+..++ ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 46666666666532 2222 3455566 6665554433222111122335666666666666665443 455566666
Q ss_pred cEEEeccccccc---cC-hhhhhccCCCcEEEeecCCCcccchh----hccCCCCcEEEccCCcCcccc-ChhhhcCC--
Q 004197 290 RTLCLDQSILGD---ID-IAIIGKLGNLEILSFWRSDIVHLPKA----LGQLTKLRLLDLTDCFHLKVI-APDVISSL-- 358 (769)
Q Consensus 290 ~~L~L~~~~l~~---l~-p~~i~~L~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~l~~~-~~~~~~~L-- 358 (769)
++|++++|.+.. ++ +..++++++|++|++++|.++.+|.. ++.+++|++|++++|. +... |.. ++.+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~~ 249 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCMW 249 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhccC
Confidence 666666665432 20 11124566666666666666544432 3455666666666655 3333 433 4443
Q ss_pred -CCccEEEccCCccc
Q 004197 359 -IRLEELYMGNCSIE 372 (769)
Q Consensus 359 -~~L~~L~l~~~~~~ 372 (769)
++|++|++++|.+.
T Consensus 250 ~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 250 SSALNSLNLSFAGLE 264 (310)
T ss_dssp CTTCCCEECCSSCCC
T ss_pred cCcCCEEECCCCCCC
Confidence 46666666666554
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=1.5e-14 Score=153.80 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=19.9
Q ss_pred cccccEEEecccCCccc----ccccCCCCCCCCCceEEEecCC
Q 004197 476 INKVEYLWLDKLQGVKN----VLFDLDTNGLPQLKLLWVQNNP 514 (769)
Q Consensus 476 ~~~L~~L~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~ 514 (769)
+++|+.|++.++..... .+..+ ...+|+|+.|++++++
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVI-DEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHH-HHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHH-HhcCCCceEEEccCCc
Confidence 55666666666554331 22210 1345677777776664
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=2.3e-13 Score=131.71 Aligned_cols=129 Identities=18% Similarity=0.270 Sum_probs=75.5
Q ss_pred CcccEEEecCcccCCCCc-cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEc
Q 004197 264 KKLRVLDLTRMRLLSLPS-SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDL 341 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 341 (769)
++|+.|++++|.++.+|. .+..+++|++|+|++|.++.+.|..+.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 456666666666665543 456666666666666666655555666666666666666666666554 355666666666
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEee
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIK 404 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~ 404 (769)
++|. +..++...+..+++|++|++++|.+....+ ..+..+++|+.|++++|
T Consensus 112 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 112 NANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAK-----------GTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----------TTTTTCTTCCEEECCSS
T ss_pred CCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECH-----------HHHhCCCCCCEEEeCCC
Confidence 6654 555544445666666666666665542221 33455555666555544
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.4e-13 Score=144.43 Aligned_cols=110 Identities=24% Similarity=0.312 Sum_probs=58.6
Q ss_pred cCCcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCccc-chhhccCCCCcEE
Q 004197 262 RTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHL-PKALGQLTKLRLL 339 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L 339 (769)
++++|++|+|++|.++.++ ..+..+.+|++|+|++|.++.+++..+.++++|++|++++|.+..+ |..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 5555555555555555443 3355555555555555555555344455555555555555555544 3345555555555
Q ss_pred EccCCcCccccChhhh---cCCCCccEEEccCCccc
Q 004197 340 DLTDCFHLKVIAPDVI---SSLIRLEELYMGNCSIE 372 (769)
Q Consensus 340 ~l~~~~~l~~~~~~~~---~~L~~L~~L~l~~~~~~ 372 (769)
++++|. +..+|...+ ..+++|++|++++|.+.
T Consensus 142 ~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 142 YLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp ECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred ECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 555543 455555433 34555555555555544
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=2.2e-13 Score=125.89 Aligned_cols=140 Identities=24% Similarity=0.230 Sum_probs=99.2
Q ss_pred cCCcccEEEecCcccC--CCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcc-cchhhccCCCCcE
Q 004197 262 RTKKLRVLDLTRMRLL--SLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH-LPKALGQLTKLRL 338 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~ 338 (769)
..++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467888888888877 6777777888888888888887776 667778888888888887776 6666677888888
Q ss_pred EEccCCcCccccCh-hhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcc
Q 004197 339 LDLTDCFHLKVIAP-DVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEG 412 (769)
Q Consensus 339 L~l~~~~~l~~~~~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 412 (769)
|++++|. ++.+|. ..++.+++|++|++++|.+....+ .....+..+++|+.|++..+....+|..
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLND--------YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTT--------HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHH--------HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 8888775 666542 237778888888888776652110 0013567778888888887776666543
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=3e-13 Score=131.81 Aligned_cols=141 Identities=21% Similarity=0.264 Sum_probs=118.1
Q ss_pred CccccCCcchHhhhcCCcccEEEecCcccCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCccc
Q 004197 248 NSFVAPNVSENFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHL 326 (769)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~l 326 (769)
....+| .. -.++|++|++++|.++.+ |..+..+.+|++|+|++|.++.+++..++++++|++|++++|.++.+
T Consensus 30 ~l~~ip---~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 30 RHASVP---AG---IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp CCSSCC---SC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CcCccC---CC---CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 345666 33 248899999999999976 67789999999999999999999666789999999999999999988
Q ss_pred chh-hccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeC
Q 004197 327 PKA-LGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKN 405 (769)
Q Consensus 327 p~~-i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 405 (769)
|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+....+ ..+..+++|+.|++.+|.
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIPH-----------GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCCT-----------TTTTTCTTCCEEECTTSC
T ss_pred ChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccCH-----------HHHhCCCCCCEEEeeCCC
Confidence 765 6889999999999986 7889888 8999999999999998763222 567888999999998876
Q ss_pred CC
Q 004197 406 DI 407 (769)
Q Consensus 406 ~~ 407 (769)
..
T Consensus 171 ~~ 172 (229)
T 3e6j_A 171 WD 172 (229)
T ss_dssp BC
T ss_pred cc
Confidence 43
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1e-13 Score=158.49 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=106.2
Q ss_pred cCcceEEEeecCCCCCCCCcc-CCCCcE-EEecCCC---CccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCC
Q 004197 214 LKKYFAIFLKDSIINDIPEVL-ESPQLE-FLLISPK---NSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVN 288 (769)
Q Consensus 214 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr-l~l~~~~---~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~ 288 (769)
.+.+++|++.++.+...+... ....|+ +.+.... ....++ .+.|..++.|++|+|++|.+..+|..+..+.+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~---~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMP---KDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecC---hhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 356888999888876655332 344444 3333221 111244 56788999999999999999999999999999
Q ss_pred ccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccC
Q 004197 289 LRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGN 368 (769)
Q Consensus 289 L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~ 368 (769)
|++|+|++|.++.+ |..|++|++|++|+|++|.++.+|..+++|++|++|++++|. ++.+|.+ ++++++|++|++++
T Consensus 249 L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCC
Confidence 99999999999999 899999999999999999999999999999999999999986 7899998 99999999999999
Q ss_pred Ccccccee
Q 004197 369 CSIEWEVE 376 (769)
Q Consensus 369 ~~~~~~~~ 376 (769)
|.+.+.++
T Consensus 326 N~l~~~~p 333 (727)
T 4b8c_D 326 NPLEKQFL 333 (727)
T ss_dssp SCCCSHHH
T ss_pred CccCCCCh
Confidence 99886554
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=3.7e-13 Score=130.19 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=116.7
Q ss_pred EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCC--ccccccCCccEEEeccccccccChhhhhccCCCcEEEe
Q 004197 241 FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP--SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSF 318 (769)
Q Consensus 241 l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l 318 (769)
+.+.++ ....+| ..+ ...+++|++++|.++.++ ..++.+++|++|++++|.++.+++..++++++|++|++
T Consensus 16 l~~s~n-~l~~iP---~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 16 VDCSNQ-KLNKIP---EHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp EECCSS-CCSSCC---SCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEeCCC-CcccCc---cCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 444433 344566 332 346789999999999773 34889999999999999999886668999999999999
Q ss_pred ecCCCcccchh-hccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCcc
Q 004197 319 WRSDIVHLPKA-LGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLT 397 (769)
Q Consensus 319 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 397 (769)
++|.++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+....+ ..+..+++|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~ 156 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAP-----------GAFDTLHSLS 156 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCT-----------TTTTTCTTCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECH-----------HHhcCCCCCC
Confidence 99999988764 8899999999999987 777755558899999999999998874444 6778889999
Q ss_pred EEEEEeeC
Q 004197 398 TIEINIKN 405 (769)
Q Consensus 398 ~L~l~~~~ 405 (769)
.|++++|.
T Consensus 157 ~L~L~~N~ 164 (220)
T 2v70_A 157 TLNLLANP 164 (220)
T ss_dssp EEECCSCC
T ss_pred EEEecCcC
Confidence 99998875
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=3.8e-13 Score=124.29 Aligned_cols=131 Identities=22% Similarity=0.245 Sum_probs=109.4
Q ss_pred ccCcceEEEeecCCCC--CCCCccCCCCcEEEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCcc
Q 004197 213 ALKKYFAIFLKDSIIN--DIPEVLESPQLEFLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLR 290 (769)
Q Consensus 213 ~~~~lr~L~l~~~~~~--~l~~~~~~~~Lrl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~ 290 (769)
.++++++|++++|.+. .++ ..+..+++|++|++++|.++.+ ..++.+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~--------------------------~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~ 74 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE--------------------------GLTAEFVNLEFLSLINVGLISV-SNLPKLPKLK 74 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS--------------------------SCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCC
T ss_pred CcccCCEEECCCCCCChhhHH--------------------------HHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCC
Confidence 3466778888777654 333 2357889999999999999887 7889999999
Q ss_pred EEEeccccccc-cChhhhhccCCCcEEEeecCCCcccc--hhhccCCCCcEEEccCCcCccccCh---hhhcCCCCccEE
Q 004197 291 TLCLDQSILGD-IDIAIIGKLGNLEILSFWRSDIVHLP--KALGQLTKLRLLDLTDCFHLKVIAP---DVISSLIRLEEL 364 (769)
Q Consensus 291 ~L~L~~~~l~~-l~p~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~~~---~~~~~L~~L~~L 364 (769)
+|++++|.++. + |..++++++|++|++++|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|
T Consensus 75 ~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 75 KLELSENRIFGGL-DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp EEEEESCCCCSCC-CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEE
T ss_pred EEECcCCcCchHH-HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEe
Confidence 99999999888 6 788888999999999999999877 689999999999999986 777776 448899999999
Q ss_pred EccCCccc
Q 004197 365 YMGNCSIE 372 (769)
Q Consensus 365 ~l~~~~~~ 372 (769)
++++|...
T Consensus 153 ~l~~n~~~ 160 (168)
T 2ell_A 153 DGYDREDQ 160 (168)
T ss_dssp TTEETTSC
T ss_pred cCCCCChh
Confidence 99888765
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=5.8e-13 Score=146.46 Aligned_cols=133 Identities=22% Similarity=0.305 Sum_probs=72.5
Q ss_pred cceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEEEe
Q 004197 216 KYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCL 294 (769)
Q Consensus 216 ~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 294 (769)
+++.|++++|.+..+|... +++|+ |.+.++... .+| ..+++|++|++++|.++.+|. ++. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip-------~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP-------ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC-------CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc-------cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 5677777777776666422 24555 555544322 333 234555566666655555554 433 5566666
Q ss_pred ccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 295 DQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 295 ~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
++|.++.+ |. .+++|++|++++|.++.+|. .+++|++|++++|. ++.+|. ++ ++|+.|++++|.+.
T Consensus 128 s~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 128 DNNQLTML-PE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS
T ss_pred CCCcCCCC-CC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC
Confidence 66555555 33 45555666666655555554 34555566655554 444554 33 55555555555544
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=6e-13 Score=132.59 Aligned_cols=151 Identities=23% Similarity=0.209 Sum_probs=129.6
Q ss_pred cCCccccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCcccccc
Q 004197 208 WPDADALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLL 286 (769)
Q Consensus 208 ~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l 286 (769)
.+.....+++++|++++|.+..++....+++|+ |.+.++. ...++ . +..+++|++|++++|.++.+|....
T Consensus 34 ~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~-i~~~~---~--l~~l~~L~~L~L~~N~l~~l~~~~~-- 105 (263)
T 1xeu_A 34 LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-ISDLS---P--LKDLTKLEELSVNRNRLKNLNGIPS-- 105 (263)
T ss_dssp EECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCG---G--GTTCSSCCEEECCSSCCSCCTTCCC--
T ss_pred ccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc-cCCCh---h--hccCCCCCEEECCCCccCCcCcccc--
Confidence 333455688999999999999898666899999 9988765 34455 3 7899999999999999998875444
Q ss_pred CCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEc
Q 004197 287 VNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYM 366 (769)
Q Consensus 287 ~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l 366 (769)
.+|++|++++|.++.+ + .++++++|++|++++|.++.+| .++.+++|++|++++|. +..++ . +..+++|+.|++
T Consensus 106 ~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~-~-l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTG-G-LTRLKKVNWIDL 179 (263)
T ss_dssp SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCT-T-STTCCCCCEEEE
T ss_pred CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchH-H-hccCCCCCEEeC
Confidence 9999999999999998 4 6999999999999999999987 69999999999999987 66663 3 899999999999
Q ss_pred cCCccc
Q 004197 367 GNCSIE 372 (769)
Q Consensus 367 ~~~~~~ 372 (769)
++|.+.
T Consensus 180 ~~N~~~ 185 (263)
T 1xeu_A 180 TGQKCV 185 (263)
T ss_dssp EEEEEE
T ss_pred CCCccc
Confidence 998876
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=5e-13 Score=128.37 Aligned_cols=131 Identities=24% Similarity=0.307 Sum_probs=101.3
Q ss_pred CCcccEEEecCcccCCCCc-cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEE
Q 004197 263 TKKLRVLDLTRMRLLSLPS-SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLD 340 (769)
Q Consensus 263 l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~ 340 (769)
.++|++|++++|.++.+|. .++.+++|++|++++|.++.+++..++++++|++|++++|.++.+|.. +.++++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4578888888888887764 467888888888888888888555678888888888888888877765 57888888888
Q ss_pred ccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeC
Q 004197 341 LTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKN 405 (769)
Q Consensus 341 l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 405 (769)
+++|. +..++...++.+++|++|++++|.+....+ ..+..+++|+.|++++|.
T Consensus 107 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-----------GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----------TTTTTCTTCCEEECCSCC
T ss_pred cCCCc-CcccCHhHhccCCcCCEEECCCCccceeCH-----------HHhccCCCccEEEecCCC
Confidence 88875 677777657888888888888887662222 346777888888887664
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=5.6e-13 Score=139.89 Aligned_cols=107 Identities=23% Similarity=0.324 Sum_probs=59.3
Q ss_pred cccEEEecCcccCCCCcc-cc-ccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEc
Q 004197 265 KLRVLDLTRMRLLSLPSS-ID-LLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDL 341 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l 341 (769)
.+++|+|++|.++.++.. +. .+.+|++|+|++|.++.++|..+.++++|++|++++|.+..+|. .+..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 455566666665554332 33 55666666666666655544455666666666666665555543 3555566666666
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
++|. +..+++..+..+++|++|++++|.+.
T Consensus 120 ~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 120 YNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CSSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCc-ccEECHHHhCCcccCCEEECCCCcCC
Confidence 5554 44444333555666666666555544
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=2.1e-13 Score=143.34 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=92.7
Q ss_pred HhhhcCCcccEEEecCcccCCCC-----ccccccC-CccEEEeccccccccChhhhhcc-----CCCcEEEeecCCCccc
Q 004197 258 NFFKRTKKLRVLDLTRMRLLSLP-----SSIDLLV-NLRTLCLDQSILGDIDIAIIGKL-----GNLEILSFWRSDIVHL 326 (769)
Q Consensus 258 ~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~l~-~L~~L~L~~~~l~~l~p~~i~~L-----~~L~~L~l~~~~l~~l 326 (769)
.++...++|++|++++|.++..+ ..+..++ +|++|++++|.++...+..+..+ ++|++|++++|.+...
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 45555666888888888887654 4566777 78888888888776656677765 7888888888877754
Q ss_pred ch-h----hccC-CCCcEEEccCCcCccccChhhh----cC-CCCccEEEccCCccccceeccccccccCCchhhcCCC-
Q 004197 327 PK-A----LGQL-TKLRLLDLTDCFHLKVIAPDVI----SS-LIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLP- 394 (769)
Q Consensus 327 p~-~----i~~l-~~L~~L~l~~~~~l~~~~~~~~----~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~- 394 (769)
+. . +..+ ++|++|++++|. ++..+...+ .. .++|++|++++|.+..... ......+..++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-------~~l~~~l~~~~~ 167 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-------DELIQILAAIPA 167 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-------HHHHHHHHTSCT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-------HHHHHHHhcCCc
Confidence 33 2 4444 788888888876 565554323 23 2588888888877652111 11113344454
Q ss_pred CccEEEEEeeCCC
Q 004197 395 WLTTIEINIKNDI 407 (769)
Q Consensus 395 ~L~~L~l~~~~~~ 407 (769)
+|+.|++++|..+
T Consensus 168 ~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 168 NVNSLNLRGNNLA 180 (362)
T ss_dssp TCCEEECTTSCGG
T ss_pred cccEeeecCCCCc
Confidence 7777777766543
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=7.3e-14 Score=146.84 Aligned_cols=140 Identities=13% Similarity=0.120 Sum_probs=88.2
Q ss_pred HhhhcCC-cccEEEecCcccCCC-Ccccccc-----CCccEEEeccccccccChhhhhcc-----CCCcEEEeecCCCcc
Q 004197 258 NFFKRTK-KLRVLDLTRMRLLSL-PSSIDLL-----VNLRTLCLDQSILGDIDIAIIGKL-----GNLEILSFWRSDIVH 325 (769)
Q Consensus 258 ~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~l-----~~L~~L~L~~~~l~~l~p~~i~~L-----~~L~~L~l~~~~l~~ 325 (769)
+.+.+++ +|++|++++|.++.. +..+..+ ++|++|++++|.++..++..++.. ++|++|++++|.+..
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 5566777 788888888877754 4555554 788888888888776545544443 788888888887775
Q ss_pred cch-h----hcc-CCCCcEEEccCCcCccc-----cChhhhcCCC-CccEEEccCCccccceeccccccccCCchhhcCC
Q 004197 326 LPK-A----LGQ-LTKLRLLDLTDCFHLKV-----IAPDVISSLI-RLEELYMGNCSIEWEVERVNSERSNASLDELMLL 393 (769)
Q Consensus 326 lp~-~----i~~-l~~L~~L~l~~~~~l~~-----~~~~~~~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l 393 (769)
.+. . +.. .++|++|++++|. ++. ++.. +..++ +|++|++++|.+....+ ......+...
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l~~~~~-------~~l~~~l~~~ 194 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRGNNLASKNC-------AELAKFLASI 194 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTTSCGGGSCH-------HHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecCCCCchhhH-------HHHHHHHHhC
Confidence 543 2 333 2578888888875 442 2222 44554 78888888877652221 1111234455
Q ss_pred -CCccEEEEEeeCC
Q 004197 394 -PWLTTIEINIKND 406 (769)
Q Consensus 394 -~~L~~L~l~~~~~ 406 (769)
++|+.|++++|..
T Consensus 195 ~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 195 PASVTSLDLSANLL 208 (362)
T ss_dssp CTTCCEEECTTSCG
T ss_pred CCCCCEEECCCCCC
Confidence 4777777776653
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.7e-12 Score=122.60 Aligned_cols=108 Identities=18% Similarity=0.261 Sum_probs=89.9
Q ss_pred CcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEcc
Q 004197 264 KKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLT 342 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 342 (769)
++|++|++++|.++.+|..+..+.+|++|++++|.++.+++..|.++++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 57888888888888888888888888888888888888866778888888888888888887765 58888888888888
Q ss_pred CCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 343 DCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 343 ~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
+|. +..+|.+.+..+++|++|++++|.+.
T Consensus 111 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 876 77787766788888888888887764
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=4.9e-13 Score=120.74 Aligned_cols=105 Identities=24% Similarity=0.289 Sum_probs=79.9
Q ss_pred hhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccc-cChhhhhccCCCcEEEeecCCCcccc--hhhccCCCC
Q 004197 260 FKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGD-IDIAIIGKLGNLEILSFWRSDIVHLP--KALGQLTKL 336 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~-l~p~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L 336 (769)
+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. + |..++++++|++|++++|.++.+| ..++.+++|
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCT-HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchH-HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 46778888888888887776 667788888888888888776 5 777777888888888888877765 677888888
Q ss_pred cEEEccCCcCccccCh---hhhcCCCCccEEEcc
Q 004197 337 RLLDLTDCFHLKVIAP---DVISSLIRLEELYMG 367 (769)
Q Consensus 337 ~~L~l~~~~~l~~~~~---~~~~~L~~L~~L~l~ 367 (769)
++|++++|. +..+|. ..++.+++|+.|+++
T Consensus 116 ~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 116 KSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 888888875 666665 347777888877654
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=2.5e-12 Score=141.38 Aligned_cols=174 Identities=20% Similarity=0.240 Sum_probs=140.8
Q ss_pred EEEEeCCcccccCCccccCcceEEEeecCCCCCCCCccCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcc
Q 004197 197 AFAVRNKDVWKWPDADALKKYFAIFLKDSIINDIPEVLESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMR 275 (769)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 275 (769)
.+...+..+..+|. ...++++.|++++|.+..+| ..+++|+ |.+.++... .+| . +.+ +|++|++++|.
T Consensus 63 ~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~-~ip---~--l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 63 ELQLNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLS-TLP---E--LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp EEECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCS-CCC---C--CCT--TCCEEECCSSC
T ss_pred EEEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCC-Ccc---h--hhc--CCCEEECCCCc
Confidence 35566666766665 34588999999999999888 5578999 998887654 477 3 333 99999999999
Q ss_pred cCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhh
Q 004197 276 LLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVI 355 (769)
Q Consensus 276 i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~ 355 (769)
++.+|. .+++|++|++++|.++.+ |. .+++|++|++++|.++.+|. +. ++|++|++++|. ++.+|. +
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~ 198 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--V 198 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--C
T ss_pred CCCCCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--H
Confidence 999987 689999999999999999 55 68899999999999999998 66 999999999986 778887 4
Q ss_pred cCCCCc-------cEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCC
Q 004197 356 SSLIRL-------EELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDII 408 (769)
Q Consensus 356 ~~L~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 408 (769)
.. +| +.|++++|.+. .+| ..+..+++|+.|++++|....
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~-~lp-----------~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRIT-HIP-----------ENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp C----------CCEEEECCSSCCC-CCC-----------GGGGGSCTTEEEECCSSSCCH
T ss_pred HH--hhhcccccceEEecCCCcce-ecC-----------HHHhcCCCCCEEEeeCCcCCC
Confidence 43 66 99999999887 344 566779999999999887543
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.6e-12 Score=120.98 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=75.2
Q ss_pred CCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch--hhccCCCCcEEE
Q 004197 263 TKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK--ALGQLTKLRLLD 340 (769)
Q Consensus 263 l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~ 340 (769)
.++|++|++++|.++.+ ..++.+++|++|++++|.++.++|..++.+++|++|++++|.+..+|. .+..+++|++|+
T Consensus 41 ~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 34777777777777766 467777777777777777777733444777777777777777777776 677777777777
Q ss_pred ccCCcCccccChh---hhcCCCCccEEEccCCccc
Q 004197 341 LTDCFHLKVIAPD---VISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 341 l~~~~~l~~~~~~---~~~~L~~L~~L~l~~~~~~ 372 (769)
+++|. +..+|.. .++.+++|+.|+++++...
T Consensus 120 l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77765 5555553 3667777777777666543
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=2.4e-12 Score=121.59 Aligned_cols=107 Identities=20% Similarity=0.233 Sum_probs=71.6
Q ss_pred cccEEEecCcccCCCCcc--ccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEc
Q 004197 265 KLRVLDLTRMRLLSLPSS--IDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDL 341 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 341 (769)
+|++|++++|.++.++.. ++.+++|++|+|++|.++.+.|..++++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 667777777777766543 66777777777777777766566677777777777777777765543 666777777777
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
++|. +..+++..++.+++|++|++++|.+.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7765 44443333667777777777766654
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=1.8e-12 Score=122.40 Aligned_cols=126 Identities=23% Similarity=0.322 Sum_probs=110.6
Q ss_pred cEEEecCcccCCCCccccccCCccEEEeccccccccChh-hhhccCCCcEEEeecCCCccc-chhhccCCCCcEEEccCC
Q 004197 267 RVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIA-IIGKLGNLEILSFWRSDIVHL-PKALGQLTKLRLLDLTDC 344 (769)
Q Consensus 267 r~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~ 344 (769)
++++++++.++.+|..+.. +|++|++++|.++.+++. .++++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7999999999999987755 999999999999999443 499999999999999999977 678999999999999998
Q ss_pred cCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCC
Q 004197 345 FHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKND 406 (769)
Q Consensus 345 ~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 406 (769)
. ++.++...++.+++|++|++++|.+....+ ..+..+++|+.|++++|..
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQISCVMP-----------GSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCCCEECT-----------TSSTTCTTCCEEECTTCCB
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCCeeCH-----------HHhhcCCCCCEEEeCCCCc
Confidence 7 777877668999999999999999885544 6788899999999988763
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=6.1e-15 Score=163.22 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=102.1
Q ss_pred cCcceEEEeecCCCCCCCCcc-CCCCcE-EEecCCC-------------CccccCCcchHhhhcCCcccEEE-ecCcccC
Q 004197 214 LKKYFAIFLKDSIINDIPEVL-ESPQLE-FLLISPK-------------NSFVAPNVSENFFKRTKKLRVLD-LTRMRLL 277 (769)
Q Consensus 214 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr-l~l~~~~-------------~~~~~~~~~~~~~~~l~~Lr~L~-L~~~~i~ 277 (769)
.+.+++|++++|.+..+|... .+++|+ +.+.++. ....+ ...++.+++|+.|+ ++.+.+.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~----~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE----KETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGH----HHHHHHHHHHHHHCGGGHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCC----HHHHHHHHhcccCcchhhcccc
Confidence 456777888888887777544 677777 6654332 11122 24445555666555 3433322
Q ss_pred CCCc------cccc--cCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccCCcCccc
Q 004197 278 SLPS------SIDL--LVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKV 349 (769)
Q Consensus 278 ~lp~------~i~~--l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~ 349 (769)
.++. .+.. ...|++|++++|.++.+ |. ++++++|++|++++|.++.+|..++++++|++|++++|. ++.
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCC
Confidence 2211 1111 12466666666666666 44 666666666666666666666666666666666666654 555
Q ss_pred cChhhhcCCCCccEEEccCCccccce-eccccccccCCchhhcCCCCccEEEEEeeCCCCCCc
Q 004197 350 IAPDVISSLIRLEELYMGNCSIEWEV-ERVNSERSNASLDELMLLPWLTTIEINIKNDIILPE 411 (769)
Q Consensus 350 ~~~~~~~~L~~L~~L~l~~~~~~~~~-~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~ 411 (769)
+| . ++.+++|++|++++|.+.... | ..++.+++|+.|++++|.....|+
T Consensus 501 lp-~-l~~l~~L~~L~Ls~N~l~~~~~p-----------~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 501 VD-G-VANLPRLQELLLCNNRLQQSAAI-----------QPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CG-G-GTTCSSCCEEECCSSCCCSSSTT-----------GGGGGCTTCCEEECTTSGGGGSSS
T ss_pred Cc-c-cCCCCCCcEEECCCCCCCCCCCc-----------HHHhcCCCCCEEEecCCcCCCCcc
Confidence 55 3 666666666666666655322 2 455666666666666665554444
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=7.7e-13 Score=119.48 Aligned_cols=129 Identities=22% Similarity=0.206 Sum_probs=108.7
Q ss_pred cCCcccEEEecCcccC--CCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcc-cchhhccCCCCcE
Q 004197 262 RTKKLRVLDLTRMRLL--SLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH-LPKALGQLTKLRL 338 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~ 338 (769)
..++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++++++|++|++++|.+.. +|..++++++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4578999999999998 7899899999999999999999988 778999999999999999997 8888888999999
Q ss_pred EEccCCcCccccC--hhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEE
Q 004197 339 LDLTDCFHLKVIA--PDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEIN 402 (769)
Q Consensus 339 L~l~~~~~l~~~~--~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 402 (769)
|++++|. ++.++ .. ++.+++|++|++++|.+....+ .....+..+++|+.|+++
T Consensus 93 L~ls~N~-i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEP-LKKLENLKSLDLFNCEVTNLND--------YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-CCSHHHHGG-GGGCTTCCEEECTTCGGGGSTT--------HHHHHHHHCTTCCEETTB
T ss_pred EECCCCc-CCChHHHHH-HhhCCCCCEEeCcCCcccchHH--------HHHHHHHHCCCcccccCC
Confidence 9999987 66654 44 8999999999999998762211 001357778888888653
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=3.8e-12 Score=120.12 Aligned_cols=124 Identities=21% Similarity=0.249 Sum_probs=109.5
Q ss_pred cEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEccCCc
Q 004197 267 RVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCF 345 (769)
Q Consensus 267 r~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 345 (769)
++++++++.++.+|..+. .+|++|++++|.++.+ |..+.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 689999999999997764 6899999999999999 7999999999999999999998874 58999999999999987
Q ss_pred CccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeC
Q 004197 346 HLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKN 405 (769)
Q Consensus 346 ~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~ 405 (769)
+..++...++.+++|++|++++|.+....+ ..+..+++|+.|++.+|.
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHGNDISVVPE-----------GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCSSCCCBCCT-----------TTTTTCTTCCEEECCSSC
T ss_pred -cCEeCHHHhCCCCCCCEEECCCCCCCeeCh-----------hhhhcCccccEEEeCCCC
Confidence 888887769999999999999998873322 457788999999998875
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=1.6e-12 Score=121.02 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=112.2
Q ss_pred hhcCCcccEEEecCcccCCCCccccccC-CccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhh-ccCCCCc
Q 004197 260 FKRTKKLRVLDLTRMRLLSLPSSIDLLV-NLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKAL-GQLTKLR 337 (769)
Q Consensus 260 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~ 337 (769)
+.++.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.++.+|..+ +.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4578899999999999998864 66665 999999999999988 67899999999999999999998765 8999999
Q ss_pred EEEccCCcCccccCh-hhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCC
Q 004197 338 LLDLTDCFHLKVIAP-DVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKND 406 (769)
Q Consensus 338 ~L~l~~~~~l~~~~~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 406 (769)
+|++++|. ++.+|. ..++.+++|++|++++|.+.. .+ ......+..+++|+.|+++.+..
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~-------~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTN-KK-------HYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGG-ST-------THHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCC-cH-------hHHHHHHHHCCccceeCCCcCCH
Confidence 99999986 777776 238899999999999998762 22 00012478899999999988753
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=6.5e-12 Score=138.95 Aligned_cols=124 Identities=23% Similarity=0.220 Sum_probs=107.5
Q ss_pred CcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccC
Q 004197 264 KKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTD 343 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 343 (769)
..|++|++++|.++.+|. ++.+++|++|+|++|.++.+ |..++++++|++|++++|.++.+| .++++++|++|++++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 369999999999999997 99999999999999999999 899999999999999999999999 899999999999999
Q ss_pred CcCcccc--ChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEE
Q 004197 344 CFHLKVI--APDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIE 400 (769)
Q Consensus 344 ~~~l~~~--~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 400 (769)
|. ++.+ |.. ++.+++|++|++++|.+....+ .....+..+++|+.|+
T Consensus 518 N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~--------~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NR-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG--------IQERLAEMLPSVSSIL 566 (567)
T ss_dssp SC-CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS--------CTTHHHHHCTTCSEEE
T ss_pred CC-CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc--------HHHHHHHHCcccCccC
Confidence 86 7777 666 9999999999999998874332 1112344578888875
No 130
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.29 E-value=4e-12 Score=106.72 Aligned_cols=81 Identities=12% Similarity=0.207 Sum_probs=73.2
Q ss_pred hHHHHHHHhhhcchhhHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-hhhHHHHHHHHHHHHHHHHH
Q 004197 4 SIVTVVLEFVKCLAPPIERRLGYLRNYNANFRNLKAEIDKLKDESRSIQHRVSEAERKG-EKIEEKVKKWLVSANNTIEQ 82 (769)
Q Consensus 4 ~~v~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~-~~~~~~~~~W~~~~~~~~~~ 82 (769)
|++++++++ +++.+.+++.. +.+++++++.|+++++.|++++.+|+.+. ...++.++.|++++++++||
T Consensus 1 a~v~~ll~K---L~~ll~~E~~l-------~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD 70 (115)
T 3qfl_A 1 AAISNLIPK---LGELLTEEFKL-------HKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYV 70 (115)
T ss_dssp CTTCSHHHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHH---HHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHH
Confidence 467889999 99999999998 99999999999999999999999998874 23478999999999999999
Q ss_pred HHhhhhhhhhcc
Q 004197 83 AAKFIDDEVTTN 94 (769)
Q Consensus 83 ~ed~~d~~~~~~ 94 (769)
+||++|+|.++.
T Consensus 71 ~ED~iD~f~~~~ 82 (115)
T 3qfl_A 71 IEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999986654
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=4e-13 Score=127.84 Aligned_cols=138 Identities=21% Similarity=0.290 Sum_probs=111.5
Q ss_pred HhhhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCc
Q 004197 258 NFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLR 337 (769)
Q Consensus 258 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 337 (769)
..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+ |..++.+++|++|++++|.+..+| .++++++|+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 35789999999999999999998 899999999999999999999 888899999999999999999987 689999999
Q ss_pred EEEccCCcCccccCh-hhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEE
Q 004197 338 LLDLTDCFHLKVIAP-DVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIE 400 (769)
Q Consensus 338 ~L~l~~~~~l~~~~~-~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 400 (769)
+|++++|. +..++. ..++.+++|++|++++|.+....+... .........+..+++|+.|+
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~-~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN-ATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT-THHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcccccccccc-chHHHHHHHHHhCCCcEEEC
Confidence 99999986 666554 338899999999999998764332100 00011123467788888886
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=2.5e-11 Score=113.00 Aligned_cols=108 Identities=26% Similarity=0.418 Sum_probs=75.5
Q ss_pred CcccEEEecCcccCCCCc-cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEc
Q 004197 264 KKLRVLDLTRMRLLSLPS-SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDL 341 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 341 (769)
++|++|++++|.++.+|. .++.+.+|++|++++|.++.+++..++++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 567777777777776654 356777777777777777777445567777777777777777766654 467777777777
Q ss_pred cCCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 342 TDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 342 ~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
++|. ++.+|...+..+++|++|++++|.+.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 7764 66666665566777777777777655
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=2.5e-11 Score=113.06 Aligned_cols=129 Identities=23% Similarity=0.263 Sum_probs=109.8
Q ss_pred cccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEccC
Q 004197 265 KLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDLTD 343 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~ 343 (769)
..+.++++++.++.+|..+. .+|++|++++|.++.+++..++++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35789999999999986554 7999999999999999666789999999999999999988865 68999999999999
Q ss_pred CcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCC
Q 004197 344 CFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDI 407 (769)
Q Consensus 344 ~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~ 407 (769)
|. ++.+|...++.+++|++|++++|.+....+ ..+..+++|+.|++++|...
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKELALDTNQLKSVPD-----------GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----------TTTTTCTTCCEEECCSSCBC
T ss_pred CC-ccccCHHHhhCCcccCEEECcCCcceEeCH-----------HHhcCCcccCEEEecCCCee
Confidence 86 788888767899999999999998763222 44678899999999988643
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=2.6e-11 Score=112.14 Aligned_cols=104 Identities=26% Similarity=0.445 Sum_probs=89.3
Q ss_pred ccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEccCC
Q 004197 266 LRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDLTDC 344 (769)
Q Consensus 266 Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 344 (769)
-+.++++++.++.+|..+. .+|++|+|++|.++.++|..++++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3788999999998988765 7899999999999988778899999999999999999988876 478999999999987
Q ss_pred cCccccChhhhcCCCCccEEEccCCccc
Q 004197 345 FHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 345 ~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
. +..+|.+.++.+++|++|++++|.+.
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred c-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 6 77888776888999999999888765
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=3e-11 Score=111.40 Aligned_cols=105 Identities=23% Similarity=0.343 Sum_probs=92.3
Q ss_pred cccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEccC
Q 004197 265 KLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDLTD 343 (769)
Q Consensus 265 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~ 343 (769)
..++++++++.++.+|..+. .+|++|+|++|.++.++|..++++++|++|++++|.++.+|.. +.++++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35789999999999997764 8899999999999998778899999999999999999988876 58999999999999
Q ss_pred CcCccccChhhhcCCCCccEEEccCCccc
Q 004197 344 CFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 344 ~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
|. ++.+|.+.++.+++|++|++++|.+.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 86 88888876889999999999998775
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=2.8e-12 Score=146.62 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=107.6
Q ss_pred CCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhhccCCC
Q 004197 235 ESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNL 313 (769)
Q Consensus 235 ~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L 313 (769)
.++.|+ |.+.++... .+| ..++ ++++|++|+|++|.++.+|..|+.+.+|++|+|++|.++.+ |..|++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~---~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L 295 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NIS---ANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQL 295 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCC---GGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTC
T ss_pred cCCCCcEEECCCCCCC-CCC---hhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCC
Confidence 678888 888776643 677 6655 89999999999999999999999999999999999999999 8999999999
Q ss_pred cEEEeecCCCcccchhhccCCCCcEEEccCCcCccccChhhhcCCCC-ccEEEccCCccccce
Q 004197 314 EILSFWRSDIVHLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIR-LEELYMGNCSIEWEV 375 (769)
Q Consensus 314 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~-L~~L~l~~~~~~~~~ 375 (769)
++|+|++|.+..+|..+++|++|++|++++|. +...++..++.+.. +..|++.+|.+.+.+
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 99999999999999999999999999999987 54433332443321 123556666655333
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=1.2e-11 Score=117.57 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=104.5
Q ss_pred ccEEEecCc--ccCCCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchhhccCCCCcEEEccC
Q 004197 266 LRVLDLTRM--RLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKALGQLTKLRLLDLTD 343 (769)
Q Consensus 266 Lr~L~L~~~--~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 343 (769)
|+...+++. .++.+|..++.+++|++|++++|.++.+ | .++++++|++|++++|.+..+|..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 444444443 4455666899999999999999999999 6 99999999999999999999999888999999999999
Q ss_pred CcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCC
Q 004197 344 CFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKND 406 (769)
Q Consensus 344 ~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 406 (769)
|. +..+| . ++.+++|++|++++|.+.... .+..+..+++|+.|++++|..
T Consensus 103 N~-l~~l~-~-~~~l~~L~~L~l~~N~i~~~~----------~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 103 NQ-IASLS-G-IEKLVNLRVLYMSNNKITNWG----------EIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EE-CCCHH-H-HHHHHHSSEEEESEEECCCHH----------HHHHHTTTTTCSEEEECSCHH
T ss_pred Cc-CCcCC-c-cccCCCCCEEECCCCcCCchh----------HHHHHhcCCCCCEEEecCCcc
Confidence 86 77777 3 889999999999998776211 124688999999999988753
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=2.9e-10 Score=105.03 Aligned_cols=87 Identities=23% Similarity=0.320 Sum_probs=74.8
Q ss_pred CcccEEEecCcccCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEc
Q 004197 264 KKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDL 341 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 341 (769)
++|++|++++|.++.+ |..++.+++|++|+|++|.++.+++..++++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 7889999999999977 56789999999999999999999555678999999999999999988876 889999999999
Q ss_pred cCCcCccccC
Q 004197 342 TDCFHLKVIA 351 (769)
Q Consensus 342 ~~~~~l~~~~ 351 (769)
++|. +...+
T Consensus 113 ~~N~-~~c~~ 121 (174)
T 2r9u_A 113 YNNP-WDCEC 121 (174)
T ss_dssp CSSC-BCTTB
T ss_pred CCCC-ccccc
Confidence 9976 44443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=5.6e-10 Score=102.79 Aligned_cols=82 Identities=26% Similarity=0.330 Sum_probs=73.1
Q ss_pred CcccEEEecCcccCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccchh-hccCCCCcEEEc
Q 004197 264 KKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPKA-LGQLTKLRLLDL 341 (769)
Q Consensus 264 ~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 341 (769)
++|++|++++|.++.+ |..+..+.+|++|+|++|.++.+++..+.++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 7889999999999987 66789999999999999999999666679999999999999999988875 889999999999
Q ss_pred cCCc
Q 004197 342 TDCF 345 (769)
Q Consensus 342 ~~~~ 345 (769)
++|.
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9976
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=3.1e-09 Score=109.78 Aligned_cols=89 Identities=21% Similarity=0.159 Sum_probs=46.1
Q ss_pred cCCCcEEEeecCCCcccch-hhccCCCCcEEEccCCcCccccChhhhcCCCCcc-EEEccCCccccceeccccccccCCc
Q 004197 310 LGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLE-ELYMGNCSIEWEVERVNSERSNASL 387 (769)
Q Consensus 310 L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~-~L~l~~~~~~~~~~~~~~~~~~~~l 387 (769)
+++|+.|++++|.++.+|. .+..+++|+.|++..+ ++.++.+.+.++++|+ .+.+.+ .+....+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~----------- 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF----------- 290 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECT-----------
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEch-----------
Confidence 4556666666555555554 2555556666665553 5555555555566665 555544 2211111
Q ss_pred hhhcCCCCccEEEEEeeCCCCCCcc
Q 004197 388 DELMLLPWLTTIEINIKNDIILPEG 412 (769)
Q Consensus 388 ~~l~~l~~L~~L~l~~~~~~~~~~~ 412 (769)
..+.++++|+.+++..+....++..
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCCEECTT
T ss_pred hhhhCCccCCEEEeCCCccCccchh
Confidence 4455555666665555544444443
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=3.8e-09 Score=110.08 Aligned_cols=102 Identities=24% Similarity=0.273 Sum_probs=70.5
Q ss_pred EEEecCc-ccCCCCccccccCCccEEEecc-ccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEccCC
Q 004197 268 VLDLTRM-RLLSLPSSIDLLVNLRTLCLDQ-SILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDC 344 (769)
Q Consensus 268 ~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 344 (769)
.++++++ .++.+|. +..+.+|++|+|++ |.++.++|..|++|++|++|+|++|.++.+|. .+++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3466666 6777777 77777777777775 77777755667777777777777777776654 4677777777777776
Q ss_pred cCccccChhhhcCCCCccEEEccCCccc
Q 004197 345 FHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 345 ~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
. +..+|.+.+..+. |+.|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 5 6667666444444 777777776654
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1e-08 Score=105.85 Aligned_cols=54 Identities=7% Similarity=0.084 Sum_probs=27.2
Q ss_pred CCcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEE
Q 004197 263 TKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILS 317 (769)
Q Consensus 263 l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~ 317 (769)
+.+|+.|++.+ .++.++ ..|..|.+|+.|++.++.+..+++..|..+.++.++.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 55555555555 455443 2355555555555555555555444444444444433
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=3.1e-08 Score=103.11 Aligned_cols=93 Identities=18% Similarity=0.031 Sum_probs=79.1
Q ss_pred CccccCCcchHhhhcCCcccEEEecC-cccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcc
Q 004197 248 NSFVAPNVSENFFKRTKKLRVLDLTR-MRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVH 325 (769)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~ 325 (769)
....+| . +..+.+|++|+|++ |.++.+| ..|+.+.+|++|+|++|.++.++|..|++|++|++|+|++|.+..
T Consensus 20 ~l~~ip---~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 20 ALDSLH---H--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp CCTTTT---T--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred CCCccC---C--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce
Confidence 344566 4 67889999999996 9999876 578999999999999999999877789999999999999999999
Q ss_pred cchhhccCCCCcEEEccCCc
Q 004197 326 LPKALGQLTKLRLLDLTDCF 345 (769)
Q Consensus 326 lp~~i~~l~~L~~L~l~~~~ 345 (769)
+|..+....+|++|++.+|.
T Consensus 95 ~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSTTTCSCCCCEEECCSSC
T ss_pred eCHHHcccCCceEEEeeCCC
Confidence 98776555559999999876
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=3.2e-07 Score=96.67 Aligned_cols=233 Identities=13% Similarity=0.152 Sum_probs=138.2
Q ss_pred cceEEEeecCCCCCCCCc-cCCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCCCC-ccccccCCccEE
Q 004197 216 KYFAIFLKDSIINDIPEV-LESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTL 292 (769)
Q Consensus 216 ~lr~L~l~~~~~~~l~~~-~~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L 292 (769)
.+..+.+.. .+..++.. +.-.+|+ +.+..+ ...++ ...|.++ +|+.+.+.. .++.++ ..|..|.+|+.+
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~--i~~I~---~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG--LKSIG---DMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTCCCSEEECCTT--CCEEC---TTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CccEEEECC-ccCEehHhhcccCCccEEEeCCC--ccEEC---HHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 344444442 34444421 2223566 665443 44555 6667664 588888875 566553 567788888888
Q ss_pred EeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCcc
Q 004197 293 CLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSI 371 (769)
Q Consensus 293 ~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~ 371 (769)
++.++.++.++...+. ..+|+.+.+..+ ++.++. .+.++++|+.+.+..+ ++.++...+.+ .+|+.+.+.++ +
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i 259 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-V 259 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-C
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-c
Confidence 8888888888555555 578888888744 666653 4677888888888763 67777776666 77888887443 2
Q ss_pred ccceeccccccccCCchhhcCCCCccEEEEEeeCCC-----CCCcccccccccEEEEEEcCCcccccccccccccccccc
Q 004197 372 EWEVERVNSERSNASLDELMLLPWLTTIEINIKNDI-----ILPEGFFARKLERFKISIGNESFMASLPVAKDWFRSRSH 446 (769)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~l~i~~~~~~~~~~l~~~~~~~~~~~~ 446 (769)
. .++ -..+..+++|+.+.+..+... .++...
T Consensus 260 ~-~I~----------~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a--------------------------------- 295 (401)
T 4fdw_A 260 T-NIA----------SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC--------------------------------- 295 (401)
T ss_dssp C-EEC----------TTTTTTCTTCCEEEEESSCCCCCTTCEECTTT---------------------------------
T ss_pred c-EEC----------hhHhhCCCCCCEEEeCCccccCCcccEECHHH---------------------------------
Confidence 1 111 156777888888888765432 122111
Q ss_pred ccccCcccccceEEeecccccccccc-ccccccccEEEecccCCcccccccCCCCCCCCCceEEEecCC
Q 004197 447 FLINNNRESLRELKLKLDFTDVRSMK-LQAINKVEYLWLDKLQGVKNVLFDLDTNGLPQLKLLWVQNNP 514 (769)
Q Consensus 447 ~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 514 (769)
...+.+|+.+.+.. ....+... +..+++|+.+.+... ++.+... .+..+ +|+.+.+.++.
T Consensus 296 ---F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~-aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 296 ---LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFS-AFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp ---TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTT-SSSSS-CCCEEEECCSS
T ss_pred ---hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHH-hCCCC-CCCEEEEcCCC
Confidence 12334445554442 22233333 566777888877432 3333322 13455 88888887763
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=3.7e-09 Score=110.46 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=12.2
Q ss_pred ccCcceEEEeecCCCCC
Q 004197 213 ALKKYFAIFLKDSIIND 229 (769)
Q Consensus 213 ~~~~lr~L~l~~~~~~~ 229 (769)
..+.++.|++++|.+..
T Consensus 70 ~~~~L~~L~Ls~n~l~~ 86 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTP 86 (372)
T ss_dssp HHTTCCEEECTTSCCCH
T ss_pred HHhhCCEEEecCCCCCH
Confidence 34678888888887643
No 146
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.57 E-value=4.9e-08 Score=107.96 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=63.6
Q ss_pred Ccchhcc-cchhhhhhhhHHHHHHHhhcC---CccEEEEEccCCCchHHHHHHHHH--HhhhhcCCCeEEEEEcCCCceE
Q 004197 104 NLKTRYR-LSKKAETEEKGLAMQTALIDV---NVSIIGVYGMGGIGKTTLVKEFAR--RAIEDKLCDMVVFSEDGSNKFF 177 (769)
Q Consensus 104 ~~~~~~~-i~~~~~~~~~~~~i~~~l~~~---~~~vi~I~G~gG~GKTtla~~v~~--~~~~~~~F~~~~~~~~~~~~~~ 177 (769)
.+|.... +|++... +.|.++|..+ +.+||+||||||+||||||+.||+ +..++.+|+.++|+.......+
T Consensus 123 ~~p~~~~~~GR~~~~----~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~ 198 (549)
T 2a5y_B 123 NVPKQMTCYIREYHV----DRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPK 198 (549)
T ss_dssp TCBCCCCSCCCHHHH----HHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTT
T ss_pred CCCCCCccCCchHHH----HHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCC
Confidence 4455444 6777666 6788888744 589999999999999999999998 5677899999999965443213
Q ss_pred ehhHHHHHHHHHHhh
Q 004197 178 SMHDVVRDVAISIAF 192 (769)
Q Consensus 178 ~~hdl~~dl~~~~~~ 192 (769)
.+.++.++++..+..
T Consensus 199 ~~~~~~~~il~~l~~ 213 (549)
T 2a5y_B 199 STFDLFTDILLMLKS 213 (549)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhc
Confidence 466777777776653
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.42 E-value=2e-06 Score=90.53 Aligned_cols=107 Identities=11% Similarity=0.208 Sum_probs=52.1
Q ss_pred hHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCc-----ccc-hh
Q 004197 257 ENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIV-----HLP-KA 329 (769)
Q Consensus 257 ~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~-----~lp-~~ 329 (769)
...|.++++|+.+++..+ ++.++ ..|.. .+|+.+.+ .+.++.+++..|.++++|+.+++.++.+. .++ ..
T Consensus 219 ~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 219 SQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp TTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred hhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 444455555555555432 33332 22333 44555555 22344454455555556666665554332 232 23
Q ss_pred hccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccC
Q 004197 330 LGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGN 368 (769)
Q Consensus 330 i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~ 368 (769)
+..+++|+.+.+.. .++.++.+.+.++++|+.+.+..
T Consensus 296 F~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 296 LEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT
T ss_pred hhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc
Confidence 55555566555553 24555555555556666665533
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.42 E-value=4.7e-06 Score=88.13 Aligned_cols=106 Identities=10% Similarity=0.080 Sum_probs=53.2
Q ss_pred hHhhhcCCcccEEEecCcccCCCC-ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccc-hhhccCC
Q 004197 257 ENFFKRTKKLRVLDLTRMRLLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLP-KALGQLT 334 (769)
Q Consensus 257 ~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~ 334 (769)
..+|.++.+|+.+.+..+ ++.++ ..|.++.+|+.+++..+ ++.++...+.++.+|+.+.+..+ +..+. ..+..+.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 455666677777766533 55443 34666666776666543 55554455666666666555433 22222 1233333
Q ss_pred CCcEEEccCCcCccccChhhhcCCCCccEEEccC
Q 004197 335 KLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGN 368 (769)
Q Consensus 335 ~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~ 368 (769)
.+...... ....+....+.++++|+.+.+.+
T Consensus 141 ~~~~~~~~---~~~~i~~~aF~~c~~L~~i~l~~ 171 (394)
T 4fs7_A 141 FKEITIPE---GVTVIGDEAFATCESLEYVSLPD 171 (394)
T ss_dssp CSEEECCT---TCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccCc---cccccchhhhcccCCCcEEecCC
Confidence 22222111 12334444455666666666543
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=8.3e-08 Score=86.61 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=19.5
Q ss_pred ccCccccccCcccccccCCCccccCCCcceEEEecCCCcee
Q 004197 701 RVTTLTLQDLPELRCLYPGMHTLEWPALKFLVVSGCDKLKI 741 (769)
Q Consensus 701 ~L~~L~l~~c~~L~~l~~~~~~l~~~~L~~L~i~~C~~L~~ 741 (769)
+|++|+|++|+.+++-...... .+++|+.|++++||+++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCc
Confidence 3455555555444432221111 236666666666666654
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=6.6e-08 Score=87.25 Aligned_cols=68 Identities=16% Similarity=0.369 Sum_probs=38.5
Q ss_pred cCCCccEEEEecCCCcceecchhhHhh----cccCcEEeEccccccceeeccccccCCcCeeeecccCccccccCccccc
Q 004197 640 HFQSLTRLIVWHCHKLKYIFLASMIRS----FEQLQQLDIVNCRGLQEIISEDRVDHVTPRFVFQRVTTLTLQDLPELRC 715 (769)
Q Consensus 640 ~l~~L~~L~l~~c~~l~~l~~~~~~~~----l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 715 (769)
.+++|++|++++|..+++-. ...+.. +++|++|+|++|++++. .++.. +..+++|++|++++|+.++.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD----~Gl~~---L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTD----KGIIA---LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCH----HHHHH---GGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCH----HHHHH---HhcCCCCCEEECCCCCCCCc
Confidence 56666777777776666531 122222 23577777777766654 23332 23456677777777776665
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.35 E-value=1.8e-07 Score=97.53 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=24.3
Q ss_pred CCccEEEeccccccc-----cChhhhhccCCCcEEEeecCCCcc-----cchhhccCCCCcEEEccCC
Q 004197 287 VNLRTLCLDQSILGD-----IDIAIIGKLGNLEILSFWRSDIVH-----LPKALGQLTKLRLLDLTDC 344 (769)
Q Consensus 287 ~~L~~L~L~~~~l~~-----l~p~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~ 344 (769)
.+|++|+|++|.++. + +..+...++|++|++++|.+.. ++..+...++|++|++++|
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l-~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVL-MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHH-HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred CccceeeCCCCCCChHHHHHH-HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 344444444444432 2 2233344444444444444431 2333344444444444444
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.21 E-value=3.8e-05 Score=81.08 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=27.6
Q ss_pred cccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCCCcEEE
Q 004197 282 SIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTKLRLLD 340 (769)
Q Consensus 282 ~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~ 340 (769)
+|.++.+|+.+.+.. .++.++...|.++.+|+.+++..+ ++.++. .+..+.+|+.+.
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~ 123 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSIL 123 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCC
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhc
Confidence 355555666666542 255554445555555555555433 333332 234444444443
No 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.18 E-value=2.9e-06 Score=96.35 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=50.1
Q ss_pred ccchhhhhhhhHHHHHHHhhc-CCccEEEEEccCCCchHHHHHHHHHHhhhhcCCCe-EEEEEcCC
Q 004197 110 RLSKKAETEEKGLAMQTALID-VNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDM-VVFSEDGS 173 (769)
Q Consensus 110 ~i~~~~~~~~~~~~i~~~l~~-~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~-~~~~~~~~ 173 (769)
.++|+... +.|.++|.+ ++.+||+|+||||+||||||+.+|++..++.+|+. ++|+.-+.
T Consensus 130 ~VGRe~eL----eeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 130 NVSRLQPY----LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCCHHHH----HHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCCcHHHH----HHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 37777666 678888775 56899999999999999999999998778889997 89986544
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.13 E-value=2.4e-06 Score=79.40 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=83.0
Q ss_pred hHhhhcCCcccEEEecCc-ccC-----CCCccccccCCccEEEeccccccc-----cChhhhhccCCCcEEEeecCCCcc
Q 004197 257 ENFFKRTKKLRVLDLTRM-RLL-----SLPSSIDLLVNLRTLCLDQSILGD-----IDIAIIGKLGNLEILSFWRSDIVH 325 (769)
Q Consensus 257 ~~~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~l~~-----l~p~~i~~L~~L~~L~l~~~~l~~ 325 (769)
...+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.. + ...+...++|++|++++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l-~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL-AEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH-HHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH-HHHHHhCCCcCEEECcCCcCCH
Confidence 455677899999999998 776 244556777889999999998764 4 4556666889999999998773
Q ss_pred -----cchhhccCCCCcEEEc--cCCcCccc-----cChhhhcCCCCccEEEccCCccc
Q 004197 326 -----LPKALGQLTKLRLLDL--TDCFHLKV-----IAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 326 -----lp~~i~~l~~L~~L~l--~~~~~l~~-----~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
+...+...++|++|++ ++|. ++. +... +...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANM-LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHH-HHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHH-HHhCCCcCEEeccCCCCC
Confidence 5666777888999999 6665 433 2222 555678888888877654
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=2.5e-06 Score=88.14 Aligned_cols=141 Identities=20% Similarity=0.170 Sum_probs=91.3
Q ss_pred hHhhhcCCcccEEEecCcccCCCCccccccCCccEEEeccccccccChhhhh--ccCCCcEEEeecC--C------Cccc
Q 004197 257 ENFFKRTKKLRVLDLTRMRLLSLPSSIDLLVNLRTLCLDQSILGDIDIAIIG--KLGNLEILSFWRS--D------IVHL 326 (769)
Q Consensus 257 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~--~L~~L~~L~l~~~--~------l~~l 326 (769)
..++..+++|+.|+++++.-..++. + .+.+|++|++..|.+..-....++ ++++|++|+|+.+ . +..+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 4677889999999998874234554 4 388999999998886532124444 7899999999742 1 2222
Q ss_pred chhh--ccCCCCcEEEccCCcCccccChhh--hcCCCCccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEE
Q 004197 327 PKAL--GQLTKLRLLDLTDCFHLKVIAPDV--ISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEIN 402 (769)
Q Consensus 327 p~~i--~~l~~L~~L~l~~~~~l~~~~~~~--~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~ 402 (769)
...+ ..+++|++|++.+|......+... ...+++|++|+++.|.+..... ......+..+++|+.|+++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~-------~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA-------RLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH-------HHHHTTHHHHTTCSEEECC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH-------HHHHhhcccCCcceEEECC
Confidence 2222 357899999998876322222221 1357899999998877652110 1112344667889999998
Q ss_pred eeCC
Q 004197 403 IKND 406 (769)
Q Consensus 403 ~~~~ 406 (769)
.|..
T Consensus 316 ~n~i 319 (362)
T 2ra8_A 316 YNYL 319 (362)
T ss_dssp SBBC
T ss_pred CCcC
Confidence 7643
No 156
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.86 E-value=4.5e-06 Score=92.19 Aligned_cols=155 Identities=10% Similarity=-0.057 Sum_probs=97.5
Q ss_pred hhhHHHHhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---cchhhHHHHHHHHHHHHHHHHHH--Hhhh-
Q 004197 17 APPIERRLGYLRNYNANFRNLKAEIDKLKDESRSIQHRVSE---AER---KGEKIEEKVKKWLVSANNTIEQA--AKFI- 87 (769)
Q Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~---a~~---~~~~~~~~~~~W~~~~~~~~~~~--ed~~- 87 (769)
.+.+..+.+|.+|.+.++..- ....+++....|.+.|++ |.+ ...... .-.|+..+.....+. .++.
T Consensus 290 l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~--~w~~~~~l~~~l~~~~~~~i~~ 365 (549)
T 2a5y_B 290 VTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK--TFEKMAQLNNKLESRGLVGVEC 365 (549)
T ss_dssp CCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS--SHHHHHHHHHHHHHHCSSTTCC
T ss_pred CCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc--hHHHHHHhHHHhhcccHHHHHH
Confidence 356777888888888765431 124566677888888887 222 111111 123444333322211 1111
Q ss_pred ------hhhhhccccccc-----------ccCCCcchhcccchhhhhhhhHHHHHH--HhhcCCccEEEEEccCCCchHH
Q 004197 88 ------DDEVTTNKRCLM-----------GLCPNLKTRYRLSKKAETEEKGLAMQT--ALIDVNVSIIGVYGMGGIGKTT 148 (769)
Q Consensus 88 ------d~~~~~~~~c~~-----------~~~~~~~~~~~i~~~~~~~~~~~~i~~--~l~~~~~~vi~I~G~gG~GKTt 148 (769)
+.++.++++||. | |+.||+++.|. +. .|+++ |++.+. + +|..-..
T Consensus 366 ~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~-ls~fp~~~~i~----i~---~w~a~~~G~i~~~-------~-~~~~~~~ 429 (549)
T 2a5y_B 366 ITPYSYKSLAMALQRCVEVLSDEDRSALAF-AVVMPPGVDIP----VK---LWSCVIPVDICSN-------E-EEQLDDE 429 (549)
T ss_dssp CSSSSSSSHHHHHHHHHHTSCHHHHHHTTG-GGSSCTTCCEE----HH---HHHHHSCC---------------CCCTHH
T ss_pred HHhcccccccHHHHHHHhccchhhhhHhhh-eeeeCCCCeee----ee---eeeeeccceeccC-------C-CCCCHHH
Confidence 345778999998 8 99999999998 44 79999 778641 0 1333345
Q ss_pred HHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHHHHhhccc
Q 004197 149 LVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAISIAFRDK 195 (769)
Q Consensus 149 la~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~~~~~~e~ 195 (769)
.++ +++++..++.++... .+....|+|||++|++|+.++.+++
T Consensus 430 ~~~-~l~~L~~rsLl~~~~---~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGK---RMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEE---CSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHH-HHHHHHHcCCeeEec---CCCceEEEeChHHHHHHHHHHHHHH
Confidence 566 888898899998753 3356779999999999999887654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=1.9e-05 Score=76.98 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=32.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHD 181 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hd 181 (769)
.--|.|-+...-.|++|.+.|-+.. ...|..+.|-.++....+-+.|
T Consensus 24 w~kv~I~~g~ky~k~~ll~~i~~~~--~~~f~p~~~~~~~~~~~ffV~~ 70 (267)
T 3rw6_A 24 WFKITIPYGRKYDKAWLLSMIQSKC--SVPFTPIEFHYENTRAQFFVED 70 (267)
T ss_dssp CEEEEETTGGGSCHHHHHHHHHHTC--SSCCCCEEEEEETTEEEEEESC
T ss_pred eEEEEecCccccCHHHHHHHHHHhC--CCCcEeEEEEEeCCEEEEEeCC
Confidence 4456677766678999999997743 5678888887666555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=5.4e-06 Score=80.90 Aligned_cols=41 Identities=29% Similarity=0.298 Sum_probs=18.8
Q ss_pred cCCcccEEEecCcccCCCC---ccccccCCccEEEecccccccc
Q 004197 262 RTKKLRVLDLTRMRLLSLP---SSIDLLVNLRTLCLDQSILGDI 302 (769)
Q Consensus 262 ~l~~Lr~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~l~~l 302 (769)
++++|+.|+|++|.++.++ ..+..+++|++|+|++|.++.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 4455555555555544332 2333444444444444444433
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.78 E-value=0.0027 Score=66.77 Aligned_cols=108 Identities=11% Similarity=0.184 Sum_probs=59.8
Q ss_pred hHhhhcCC-cccEEEecCcccCCC-CccccccCCccEEEecccc---ccccChhhhhccCCCcEEEeecCCCcccch-hh
Q 004197 257 ENFFKRTK-KLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQSI---LGDIDIAIIGKLGNLEILSFWRSDIVHLPK-AL 330 (769)
Q Consensus 257 ~~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~---l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i 330 (769)
..+|.+++ .|+.+.+..+ ++.+ ..+|.++.+|+.+.+..+. ++.++...|.++.+|+.+.+..+ ++.++. .+
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 44565654 4666666543 4444 3456666777777666542 55554455666666665554432 333332 34
Q ss_pred ccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccC
Q 004197 331 GQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGN 368 (769)
Q Consensus 331 ~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~ 368 (769)
..+.+|+.+.+... +..++...+..+.+|+.+.+.+
T Consensus 134 ~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 134 HHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred hhhcccccccccce--eeeecccceecccccccccccc
Confidence 55666666666532 4555555566666666666543
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=1.6e-05 Score=73.79 Aligned_cols=87 Identities=11% Similarity=0.149 Sum_probs=69.8
Q ss_pred HhhhcCCcccEEEecCcccCC-----CCccccccCCccEEEeccccccc-----cChhhhhccCCCcEEEe--ecCCCcc
Q 004197 258 NFFKRTKKLRVLDLTRMRLLS-----LPSSIDLLVNLRTLCLDQSILGD-----IDIAIIGKLGNLEILSF--WRSDIVH 325 (769)
Q Consensus 258 ~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~l~~-----l~p~~i~~L~~L~~L~l--~~~~l~~ 325 (769)
..+...+.|++|+|++|.+.. +...+...+.|++|+|++|.|.. + ...+...++|++|++ ++|.+..
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l-~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL-VEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH-HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH-HHHHHhCCCceEEEecCCCCCCCH
Confidence 445678899999999998862 44556677899999999999874 4 566777889999999 7888773
Q ss_pred -----cchhhccCCCCcEEEccCCc
Q 004197 326 -----LPKALGQLTKLRLLDLTDCF 345 (769)
Q Consensus 326 -----lp~~i~~l~~L~~L~l~~~~ 345 (769)
+...+...++|++|++++|.
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCcCEEeccCCC
Confidence 55667778999999999876
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.73 E-value=4.2e-05 Score=78.90 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=65.9
Q ss_pred CCCCcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcccCC-CCcccc--ccCCccEEEeccc--c------cccc
Q 004197 235 ESPQLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMRLLS-LPSSID--LLVNLRTLCLDQS--I------LGDI 302 (769)
Q Consensus 235 ~~~~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~--~l~~L~~L~L~~~--~------l~~l 302 (769)
.+++|+ |.+.++.. ..++ . + .+++|+.|++..+.+.. ....++ .+++|++|+|+.+ . +..+
T Consensus 170 ~~P~L~~L~L~g~~~-l~l~---~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNN-LSIG---K--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp TCTTCCEEEEECCBT-CBCC---S--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred cCCCCcEEEEeCCCC-ceec---c--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 455666 66655421 1233 1 2 35667777776665541 112232 5667777776421 1 2222
Q ss_pred Chhhh--hccCCCcEEEeecCCCcc-cchhh---ccCCCCcEEEccCCcCccc-----cChhhhcCCCCccEEEccCCcc
Q 004197 303 DIAII--GKLGNLEILSFWRSDIVH-LPKAL---GQLTKLRLLDLTDCFHLKV-----IAPDVISSLIRLEELYMGNCSI 371 (769)
Q Consensus 303 ~p~~i--~~L~~L~~L~l~~~~l~~-lp~~i---~~l~~L~~L~l~~~~~l~~-----~~~~~~~~L~~L~~L~l~~~~~ 371 (769)
...+ ..+++|++|++++|.+.. .+..+ ..+++|++|+++.|. ++. ++.. +..+++|+.|++++|.+
T Consensus 243 -~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 243 -RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH-VDKIKHLKFINMKYNYL 319 (362)
T ss_dssp -GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT-HHHHTTCSEEECCSBBC
T ss_pred -HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh-cccCCcceEEECCCCcC
Confidence 1112 246677777777766542 12222 246677777776654 433 2222 34567777777777665
Q ss_pred c
Q 004197 372 E 372 (769)
Q Consensus 372 ~ 372 (769)
.
T Consensus 320 ~ 320 (362)
T 2ra8_A 320 S 320 (362)
T ss_dssp C
T ss_pred C
Confidence 4
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.72 E-value=0.0055 Score=64.36 Aligned_cols=144 Identities=12% Similarity=0.119 Sum_probs=91.3
Q ss_pred CcE-EEecCCCCccccCCcchHhhhcCCcccEEEecCcc---cCCCC-ccccccCCccEEEeccccccccChhhhhccCC
Q 004197 238 QLE-FLLISPKNSFVAPNVSENFFKRTKKLRVLDLTRMR---LLSLP-SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGN 312 (769)
Q Consensus 238 ~Lr-l~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---i~~lp-~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~ 312 (769)
.|+ +.+-.. ...+. ...|.++.+|+.+.+..+. ++.+. ..|..+..|+.+.+..+ ++.++...+..+.+
T Consensus 65 ~L~sI~iP~s--vt~Ig---~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIG---SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTT--CCEEC---TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTT
T ss_pred cCEEEEECCC--eeEEh---HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcc
Confidence 366 555432 34555 6778888999998887653 45553 45677788887766543 56665567788889
Q ss_pred CcEEEeecCCCcccc-hhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccccceeccccccccCCchhhc
Q 004197 313 LEILSFWRSDIVHLP-KALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIEWEVERVNSERSNASLDELM 391 (769)
Q Consensus 313 L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 391 (769)
|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+....+. -.+|+.+.+...... .....+.
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~~~~------------i~~~af~ 202 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAKVTR------------IGTNAFS 202 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTTCCE------------ECTTTTT
T ss_pred cccccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCcccc------------cccchhh
Confidence 999888754 34443 35677888998888653 6677766454 467888876543221 0113455
Q ss_pred CCCCccEEEEEe
Q 004197 392 LLPWLTTIEINI 403 (769)
Q Consensus 392 ~l~~L~~L~l~~ 403 (769)
.+..+.......
T Consensus 203 ~c~~l~~~~~~~ 214 (394)
T 4gt6_A 203 ECFALSTITSDS 214 (394)
T ss_dssp TCTTCCEEEECC
T ss_pred hccccceecccc
Confidence 666666655443
No 163
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.50 E-value=6.1e-05 Score=84.33 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=45.7
Q ss_pred cchhhhhhhhHHHHHHHhh--cCCccEEEEEccCCCchHHHHHHHHHHhhh-hcCC-CeEEEEEcCC
Q 004197 111 LSKKAETEEKGLAMQTALI--DVNVSIIGVYGMGGIGKTTLVKEFARRAIE-DKLC-DMVVFSEDGS 173 (769)
Q Consensus 111 i~~~~~~~~~~~~i~~~l~--~~~~~vi~I~G~gG~GKTtla~~v~~~~~~-~~~F-~~~~~~~~~~ 173 (769)
+||+... ..|.+.+. .++.++|+|+||||+||||||+.+|++... +..| +.+.|+..+.
T Consensus 127 vGR~~~l----~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 127 VTRKKLV----NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCHHHH----HHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred cccHHHH----HHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 4454444 67777776 346889999999999999999999987655 6778 5799986544
No 164
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.38 E-value=0.00014 Score=89.34 Aligned_cols=60 Identities=25% Similarity=0.332 Sum_probs=45.6
Q ss_pred ccchhhhhhhhHHHHHHHhh--cCCccEEEEEccCCCchHHHHHHHHHHhhh-hc-CCCeEEEEEcCC
Q 004197 110 RLSKKAETEEKGLAMQTALI--DVNVSIIGVYGMGGIGKTTLVKEFARRAIE-DK-LCDMVVFSEDGS 173 (769)
Q Consensus 110 ~i~~~~~~~~~~~~i~~~l~--~~~~~vi~I~G~gG~GKTtla~~v~~~~~~-~~-~F~~~~~~~~~~ 173 (769)
-++|+... +.|.+.|. +++.++|+|+||||+||||||+++|++... +. +++.+.|+.-..
T Consensus 126 ~vgR~~~~----~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 126 FVTRKKLV----HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCCHHHH----HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred eccHHHHH----HHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 35666555 67888775 456899999999999999999999987543 33 567778986544
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.07 E-value=0.0083 Score=51.33 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=42.5
Q ss_pred cEEEecCcccC--CCCccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCc
Q 004197 267 RVLDLTRMRLL--SLPSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIV 324 (769)
Q Consensus 267 r~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~ 324 (769)
.+++.++.+++ .+|..+. .+|++|+|++|.|+.+++..+..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46778888887 7876542 36888888888888886667788888888888887554
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.28 E-value=0.023 Score=52.14 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=71.5
Q ss_pred HhhhcCCcccEEEecCc-ccC-----CCCccccccCCccEEEeccccccc-----cChhhhhccCCCcEEEeecCCCc--
Q 004197 258 NFFKRTKKLRVLDLTRM-RLL-----SLPSSIDLLVNLRTLCLDQSILGD-----IDIAIIGKLGNLEILSFWRSDIV-- 324 (769)
Q Consensus 258 ~~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~l~~-----l~p~~i~~L~~L~~L~l~~~~l~-- 324 (769)
.++.+-..|+.|+|+++ .|. .+-..+..-+.|+.|+|++|.|.+ + ...+..=+.|++|+|++|.|.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al-A~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL-IELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH-HHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH-HHHHhcCCccCeEecCCCcCCHH
Confidence 44556678999999875 664 234456667789999999988763 4 344555678899999988776
Q ss_pred ---ccchhhccCCCCcEEEccCCc--Cccc-----cChhhhcCCCCccEEEccCCc
Q 004197 325 ---HLPKALGQLTKLRLLDLTDCF--HLKV-----IAPDVISSLIRLEELYMGNCS 370 (769)
Q Consensus 325 ---~lp~~i~~l~~L~~L~l~~~~--~l~~-----~~~~~~~~L~~L~~L~l~~~~ 370 (769)
.+-..+..-+.|++|+++++. .+.. +.. .+..-+.|+.|+++.+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 334455666678888887643 1221 111 14445667777765443
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.05 E-value=0.045 Score=56.90 Aligned_cols=107 Identities=14% Similarity=0.266 Sum_probs=63.8
Q ss_pred HhhhcCCcccEEEecCcccCCC-CccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccch-hhccCCC
Q 004197 258 NFFKRTKKLRVLDLTRMRLLSL-PSSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLPK-ALGQLTK 335 (769)
Q Consensus 258 ~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~ 335 (769)
..+..+.+|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++.++...+.++.+|+.+.+..+ +..++. .+..+++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 34556666776666543 2322 234556667777776554 55554556666777777776543 444443 3566677
Q ss_pred CcEEEccCCcCccccChhhhcCCCCccEEEccC
Q 004197 336 LRLLDLTDCFHLKVIAPDVISSLIRLEELYMGN 368 (769)
Q Consensus 336 L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~ 368 (769)
|+.+.+.++. ++.++...+.++.+|+.+.+..
T Consensus 288 L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 288 LTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CCEEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccccc-cceehhhhhcCCCCCCEEEcCc
Confidence 7777766533 5666666667777777777643
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.68 E-value=0.12 Score=53.67 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=71.6
Q ss_pred ccccccCCccEEEeccccccccChhhhhccCCCcEEEeecCCCcccc-hhhccCCCCcEEEccCCcCccccChhhhcCCC
Q 004197 281 SSIDLLVNLRTLCLDQSILGDIDIAIIGKLGNLEILSFWRSDIVHLP-KALGQLTKLRLLDLTDCFHLKVIAPDVISSLI 359 (769)
Q Consensus 281 ~~i~~l~~L~~L~L~~~~l~~l~p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~ 359 (769)
..+..+.+|+.+.+..+ +..++...+.++.+|+.+.+..+ ++.++ ..+.++.+|+.+.+.. .+..++...+..++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccccccccc
Confidence 34556666777766443 44443456667777777777654 44443 2456677777777654 25666666677777
Q ss_pred CccEEEccCCccccceeccccccccCCchhhcCCCCccEEEEEeeCCCCCCcccc--cccccEE
Q 004197 360 RLEELYMGNCSIEWEVERVNSERSNASLDELMLLPWLTTIEINIKNDIILPEGFF--ARKLERF 421 (769)
Q Consensus 360 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~l 421 (769)
+|+.+.+.++.+....+ ..+.++.+|+.+.+.. ....+....+ ..+|+.+
T Consensus 287 ~L~~i~l~~~~i~~I~~-----------~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEP-----------RVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCCEEEECCTTCCEECT-----------TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCC
T ss_pred ccccccccccccceehh-----------hhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEE
Confidence 77777776544331111 4566677777776642 2344444433 3445543
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.26 E-value=0.054 Score=46.17 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=31.8
Q ss_pred EEEeecCCCc--ccchhhccCCCCcEEEccCCcCccccChhhhcCCCCccEEEccCCccc
Q 004197 315 ILSFWRSDIV--HLPKALGQLTKLRLLDLTDCFHLKVIAPDVISSLIRLEELYMGNCSIE 372 (769)
Q Consensus 315 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~~~~L~~L~~L~l~~~~~~ 372 (769)
.++.+++.++ .+|..+ -.+|++|+|++|. ++.+|.+.+..+++|++|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 4455555555 555432 2356666666654 66666665666666777766666543
No 170
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.53 E-value=0.13 Score=46.76 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=34.8
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRDVAISIA 191 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~dl~~~~~ 191 (769)
.-..+.++|..|.||||||+.+.+........ ....+.+.+++..+.....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI---------RGYFFDTKDLIFRLKHLMD 87 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC---------CCCEEEHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC---------eEEEEEHHHHHHHHHHHhc
Confidence 35689999999999999999999976533221 1223556666666554433
No 171
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.46 E-value=0.085 Score=48.38 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.+.+.......+-|+|..|+||||+|+.+.+...
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 5667777666666788999999999999999999764
No 172
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.13 E-value=0.03 Score=68.58 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=63.2
Q ss_pred hhhhhhcccccccccCCCcchhcccchhhhhhhhHHHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeE
Q 004197 87 IDDEVTTNKRCLMGLCPNLKTRYRLSKKAETEEKGLAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMV 166 (769)
Q Consensus 87 ~d~~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~ 166 (769)
.+.++.+.++||.| |+.||.++.|.+..... .|.++ + .-++.+.+++..++.++..
T Consensus 372 ~~~L~~~~~~~~~~-l~~f~~~~~i~~~~~~~---~~~~~------------------~--~~~~~~l~~L~~~sl~~~~ 427 (1249)
T 3sfz_A 372 VEMLREDIKDYYTD-LSILQKDVKVPTKVLCV---LWDLE------------------T--EEVEDILQEFVNKSLLFCN 427 (1249)
T ss_dssp HHTSCTTTHHHHHH-GGGSCTTCCEEHHHHHH---HHTCC------------------H--HHHHHHHHHHHHTTSCEEE
T ss_pred HHhCCHHHHHHHHH-hCccCCCCeeCHHHHHH---HhCCC------------------H--HHHHHHHHHHHhccceEEe
Confidence 35678889999999 99999999999888875 55221 2 2367788888888888743
Q ss_pred EEEEcCCCceEehhHHHHHHHHHHhhcc
Q 004197 167 VFSEDGSNKFFSMHDVVRDVAISIAFRD 194 (769)
Q Consensus 167 ~~~~~~~~~~~~~hdl~~dl~~~~~~~e 194 (769)
.+++...|+|||++|++++..+.++
T Consensus 428 ---~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 428 ---RNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---ESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---cCCCceEEEecHHHHHHHHhhhhHH
Confidence 4667778999999999999887654
No 173
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.91 E-value=0.084 Score=47.09 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=24.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
..+++|+|..|+||||+++.+...+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 578999999999999999999987653
No 174
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.80 E-value=0.061 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+|.|.|+.|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 53
No 175
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.53 E-value=0.078 Score=47.76 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|+.|+||||+|+.+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998864
No 176
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.51 E-value=0.078 Score=49.21 Aligned_cols=25 Identities=48% Similarity=0.533 Sum_probs=22.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|.|+|+.|+||||+|+.+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999864
No 177
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.48 E-value=0.11 Score=47.33 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.+.+.......+-|+|..|+||||+|+.+.+...
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 5667777666566778999999999999999999754
No 178
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.36 E-value=0.43 Score=47.93 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
-.+++++|..|+||||+++.+...+..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 569999999999999999999886543
No 179
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.22 E-value=0.16 Score=47.14 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=28.7
Q ss_pred HHHHHHhhc---CCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALID---VNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~---~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+.+++.+.. ..-.+|+|.|..|.||||+++.+...+.
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455665553 3357999999999999999999988653
No 180
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.20 E-value=0.12 Score=48.43 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHHHHhhc--CCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALID--VNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~--~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+.|++.+.. ..-.+|+|+|..|.|||||++.+...+.
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455555553 3457999999999999999999988654
No 181
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.20 E-value=0.11 Score=52.10 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=24.0
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
++.+||+|.|-||+||||.+-.+.-.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 35889999999999999998888776543
No 182
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.97 E-value=0.079 Score=48.76 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+|+|+|..|.||||+++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999773
No 183
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.84 E-value=0.088 Score=47.47 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.5
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|+|+|..|.||||+++.+...+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998854
No 184
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.77 E-value=0.1 Score=54.87 Aligned_cols=57 Identities=19% Similarity=0.104 Sum_probs=33.4
Q ss_pred CccEEEE--EccCCCchHHHHHHHHHHhhhhc---CCC-eEEEEEcCCCceEehhHHHHHHHHHH
Q 004197 132 NVSIIGV--YGMGGIGKTTLVKEFARRAIEDK---LCD-MVVFSEDGSNKFFSMHDVVRDVAISI 190 (769)
Q Consensus 132 ~~~vi~I--~G~gG~GKTtla~~v~~~~~~~~---~F~-~~~~~~~~~~~~~~~hdl~~dl~~~~ 190 (769)
....+-| +|.+|+||||+|+.++++..... .|+ .++|+..... ....++++.++..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l 111 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA--PNLYTILSLIVRQT 111 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC--CSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC--CCHHHHHHHHHHHh
Confidence 3344445 99999999999999999764321 122 2455542211 23445555555444
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.73 E-value=0.1 Score=47.47 Aligned_cols=24 Identities=13% Similarity=0.397 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
++++|+|..|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998753
No 186
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.71 E-value=0.21 Score=50.98 Aligned_cols=42 Identities=17% Similarity=0.412 Sum_probs=32.1
Q ss_pred ccchhhhhhhhHHHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 110 RLSKKAETEEKGLAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 110 ~i~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-++|+... ..+.+.+..+ +++.|+|..|+|||||++.+.++.
T Consensus 14 ~~gR~~el----~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 14 IFDREEES----RKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SCSCHHHH----HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCChHHHH----HHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc
Confidence 35555544 5666666554 799999999999999999999853
No 187
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.70 E-value=0.1 Score=47.31 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|-+.|+.|+||||+|+.+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478899999999999999998854
No 188
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.56 E-value=0.12 Score=48.03 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=24.5
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..-.+|.|+|..|.||||+|+.+...+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999998765
No 189
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.53 E-value=0.27 Score=46.17 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.+++.......+-|+|..|+||||+|+.+.+...
T Consensus 27 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 27 QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 5666666655555689999999999999999998754
No 190
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.47 E-value=0.12 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+.|.++|+.|+||||+|+.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998864
No 191
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.42 E-value=0.11 Score=48.39 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|.|.|..|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998864
No 192
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.38 E-value=0.13 Score=46.50 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.+|+|+|..|.||||+++.+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998753
No 193
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.32 E-value=0.14 Score=47.53 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.0
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.-.+|+|+|..|.||||+++.+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998854
No 194
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.31 E-value=0.11 Score=45.41 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=24.3
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
.-..++|+|..|.|||||++.+.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4468999999999999999999997653
No 195
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.30 E-value=0.13 Score=47.88 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.|.|.|+.|+||||+++.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998653
No 196
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.13 E-value=0.14 Score=45.82 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|+|.|+.|+||||+|+.+.+.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998864
No 197
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.99 E-value=0.13 Score=46.78 Aligned_cols=25 Identities=44% Similarity=0.578 Sum_probs=21.8
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|.|.|+.|+||||+|+.+.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998764
No 198
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.87 E-value=0.29 Score=50.76 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=29.2
Q ss_pred HHHHHHhh----cCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALI----DVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~----~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.+.+. ......+.|+|..|+||||+|+.+.+...
T Consensus 30 ~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 30 RKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp HHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555555 34467899999999999999999999754
No 199
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.84 E-value=0.25 Score=47.22 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=29.1
Q ss_pred HHHHHHhhcCC-ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVN-VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~-~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.+++..+. ...+-|+|..|+||||+|+.+.+...
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45666665544 35789999999999999999998764
No 200
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.67 E-value=0.15 Score=46.79 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.1
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 201
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.67 E-value=0.11 Score=46.71 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.9
Q ss_pred cEEEEEccCCCchHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFA 154 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~ 154 (769)
.+++|+|..|.|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 589999999999999999744
No 202
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.66 E-value=0.16 Score=48.25 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|+|+|..|.||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 203
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.62 E-value=0.19 Score=45.86 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
-.+|.+.|+.|+||||+++.+...+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999999987653
No 204
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.61 E-value=0.25 Score=50.54 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=31.6
Q ss_pred cccchhhhhhhhHHHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 109 YRLSKKAETEEKGLAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 109 ~~i~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.-++|+... ..+.+ +.. +++.|+|..|+|||||++.+.++.
T Consensus 14 ~~~gR~~el----~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 14 DFFDREKEI----EKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp GSCCCHHHH----HHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HhcChHHHH----HHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc
Confidence 345665444 56666 544 699999999999999999999864
No 205
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.58 E-value=0.16 Score=46.65 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+|.|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998764
No 206
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.57 E-value=0.15 Score=47.52 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.3
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+|+|.|..|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 207
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.55 E-value=0.15 Score=46.16 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.3
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+|.|.|..|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 208
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.52 E-value=0.17 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+|.|.|+.|+||||+++.+.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998654
No 209
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.49 E-value=0.15 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|+||||+++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999874
No 210
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.49 E-value=0.16 Score=50.09 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=24.3
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
...+|+|+|..|+||||+|+.+...+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4579999999999999999999887653
No 211
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.45 E-value=0.16 Score=47.37 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|+|+|..|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998743
No 212
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.44 E-value=0.14 Score=47.79 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.+|.|+|+.|+||||+++.+...+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999998864
No 213
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.38 E-value=0.15 Score=47.66 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=22.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-.+|+|+|..|.||||+++.+...+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988543
No 214
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.37 E-value=0.16 Score=45.90 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|+.|+||||+|+.+...+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998864
No 215
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.30 E-value=0.34 Score=50.20 Aligned_cols=30 Identities=23% Similarity=0.112 Sum_probs=25.5
Q ss_pred cCCccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 130 DVNVSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 130 ~~~~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
.+..+.+-|+|.+|+||||+|+.+++....
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444678999999999999999999997643
No 216
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.24 E-value=0.14 Score=47.70 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..+|+|+|..|.||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998774
No 217
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.24 E-value=0.24 Score=44.57 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+++|+|..|+||||+++.+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 56899999999999999999998754
No 218
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.16 E-value=0.15 Score=46.64 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
++++|+|..|+||||+++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998854
No 219
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.16 E-value=0.71 Score=46.31 Aligned_cols=37 Identities=35% Similarity=0.376 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.+++..+....+-++|..|+||||+|+.+.+...
T Consensus 31 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 31 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 5666666666655589999999999999999999753
No 220
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.12 E-value=0.19 Score=46.63 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.4
Q ss_pred CCccEEEEEccCCCchHHHHHHHHH
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
....+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999887
No 221
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.04 E-value=0.2 Score=45.29 Aligned_cols=24 Identities=46% Similarity=0.534 Sum_probs=21.6
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.++|+|..|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 222
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.03 E-value=0.16 Score=47.36 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.9
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 223
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.02 E-value=0.19 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|+|+|..|+||||+++.+.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999754
No 224
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.01 E-value=0.17 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|+.|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998854
No 225
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.97 E-value=0.18 Score=48.71 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=22.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.+|+|+|..|.||||+++.+.+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999754
No 226
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.88 E-value=0.2 Score=45.91 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-.+|+|.|+.|+||||+|+.+.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999999998874
No 227
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.87 E-value=0.2 Score=46.00 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|+.|+||||+|+.+.+.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999998864
No 228
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.78 E-value=0.24 Score=45.94 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+-|+|..|+||||+|+.+++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999765
No 229
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.75 E-value=0.33 Score=44.40 Aligned_cols=88 Identities=11% Similarity=0.019 Sum_probs=61.9
Q ss_pred HhhhcCCcccEEEecCcccC-----CCCccccccCCccEEEeccccccccC----hhhhhccCCCcEEEeecCCC---c-
Q 004197 258 NFFKRTKKLRVLDLTRMRLL-----SLPSSIDLLVNLRTLCLDQSILGDID----IAIIGKLGNLEILSFWRSDI---V- 324 (769)
Q Consensus 258 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~l~~l~----p~~i~~L~~L~~L~l~~~~l---~- 324 (769)
+.+..-..|+.|+|++|.+. .+-..+..-+.|++|+|++|.|..-. -+.+..=+.|++|+++++.. .
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 44566778999999999886 34455667788999999999887321 23444456799999986533 2
Q ss_pred ----ccchhhccCCCCcEEEccCCc
Q 004197 325 ----HLPKALGQLTKLRLLDLTDCF 345 (769)
Q Consensus 325 ----~lp~~i~~l~~L~~L~l~~~~ 345 (769)
.+-..+..=+.|+.|++..+.
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhCCCcCeEeccCCC
Confidence 234456666889999987654
No 230
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.75 E-value=0.21 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..+|.|.|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999885
No 231
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.72 E-value=0.19 Score=45.15 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.5
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|+.|+||||+|+.+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998864
No 232
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.71 E-value=0.21 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|..|+||||+|+.+.+.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 233
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.69 E-value=0.34 Score=45.74 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=24.7
Q ss_pred hcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 129 IDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 129 ~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
......+|.|+|.+|+|||||+..+....
T Consensus 34 ~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 34 NKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999988754
No 234
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.69 E-value=0.19 Score=50.25 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-.+|||+|..|.|||||++.+..-+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 46999999999999999999988654
No 235
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.68 E-value=0.23 Score=44.44 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.|.|.|+.|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998854
No 236
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.65 E-value=0.15 Score=45.82 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
.+++|+|..|.|||||++.+...+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999998876543
No 237
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.64 E-value=0.21 Score=45.93 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|.|.|+.|+||||+|+.+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998854
No 238
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.57 E-value=0.22 Score=48.19 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.5
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|..|+||||+|+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998854
No 239
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.53 E-value=1.1 Score=46.97 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
.++|.++|.+|+||||++..+...+..+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999877644
No 240
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.44 E-value=0.23 Score=46.03 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.8
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...+|.|.|+.|+||||+|+.+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998753
No 241
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.44 E-value=0.24 Score=45.22 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..|.+.|+.|+||||+|+.+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998754
No 242
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.36 E-value=0.24 Score=45.53 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+|+|.|..|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998663
No 243
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.35 E-value=0.23 Score=45.84 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|..|+||||+|+.+.+.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998864
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.35 E-value=0.19 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
++++|+|..|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 245
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.29 E-value=1.5 Score=45.64 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=24.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
..||.++|.+|+||||++..+...+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 5799999999999999999998876543
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.25 E-value=3.1 Score=41.49 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=23.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
..+|+|+|.+|+||||++..+...+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999886653
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.16 E-value=0.2 Score=46.66 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
=.+++|+|..|.|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998753
No 248
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.09 E-value=0.14 Score=48.02 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+|+|.|..|+||||+++.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999998764
No 249
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.09 E-value=0.22 Score=47.85 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.5
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|+|+.|.||||+++.+...+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998854
No 250
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.01 E-value=0.24 Score=43.73 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.+++++|..|.|||||++.+..-.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999998854
No 251
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.93 E-value=0.25 Score=45.17 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+++|+|..|+||||+++.+...+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.87 E-value=0.25 Score=46.13 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.+|+|+|..|+||||+++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998853
No 253
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.87 E-value=0.27 Score=45.98 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
.+|.|.|+.|+||||+|+.+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999999999987643
No 254
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.83 E-value=0.26 Score=45.13 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|..|+||||+|+.+.+.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998854
No 255
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.78 E-value=0.28 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|+.|+||||+|+.+...+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998864
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.65 E-value=0.23 Score=46.80 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+++|+|..|.|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998743
No 257
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.50 E-value=0.21 Score=45.46 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=17.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|+.|+||||+|+.+.+.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998754
No 258
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.48 E-value=0.38 Score=45.26 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.3
Q ss_pred cCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 130 DVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 130 ~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.....+|.|+|.+|+||||++..+....
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4467899999999999999999988764
No 259
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.41 E-value=0.27 Score=47.31 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.+|||.|..|.||||+++.+...+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 260
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.41 E-value=0.31 Score=44.12 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+|++.|+.|.||||+++.+...+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999988654
No 261
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.38 E-value=0.28 Score=47.42 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.0
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...+|+|.|..|+||||+|+.+.+.+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998854
No 262
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.30 E-value=0.48 Score=45.15 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=28.3
Q ss_pred HHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 123 AMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 123 ~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
.+...........+-|+|..|+||||+|+.+.+....
T Consensus 42 ~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 42 ALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444444445678899999999999999999997653
No 263
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.10 E-value=0.33 Score=48.16 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
-.+|+|+|.+|+||||+++.+...+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 569999999999999999999986553
No 264
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.07 E-value=0.31 Score=45.47 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=24.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCCe
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCDM 165 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~ 165 (769)
.+|.|.|..|+||||+++.+.+.+.. ..++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 58999999999999999999987543 24444
No 265
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.04 E-value=0.33 Score=44.67 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.|+|.|..|+||||+++.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 266
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.01 E-value=0.37 Score=45.07 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=25.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcCCCe
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDM 165 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~ 165 (769)
-.+|.|.|..|+||||+|+.+.+.+.. ..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 358999999999999999999987543 23444
No 267
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.97 E-value=0.33 Score=45.34 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.5
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.-.+|.|.|+.|.||||+++.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999988654
No 268
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.90 E-value=0.34 Score=44.38 Aligned_cols=25 Identities=12% Similarity=0.379 Sum_probs=22.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-++|.|+|..|+|||||++.+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 269
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.84 E-value=0.47 Score=47.68 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.5
Q ss_pred cCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 130 DVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 130 ~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.++...|.++|+.|.||||+++.+...+.
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 44566799999999999999999988653
No 270
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.83 E-value=0.31 Score=45.82 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.1
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999865
No 271
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.69 E-value=0.35 Score=44.94 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=21.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+|+|.|..|+||||+|+.+...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998854
No 272
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.67 E-value=0.33 Score=46.32 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.7
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999887
No 273
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.65 E-value=0.41 Score=47.82 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=25.1
Q ss_pred cCCccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 130 DVNVSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 130 ~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
....++|+|+|-||+||||+|-.+...+..+
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 3457899999999999999999988876543
No 274
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.56 E-value=0.39 Score=47.65 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-.+++++|..|+||||+++.+...+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35999999999999999999998655
No 275
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.53 E-value=0.34 Score=47.04 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+|.|.|+.|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999998643
No 276
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.41 E-value=0.3 Score=46.13 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.3
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 277
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.36 E-value=0.35 Score=45.40 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.+++|+|..|+|||||++.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999998853
No 278
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.31 E-value=0.31 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.3
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999876
No 279
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.31 E-value=0.59 Score=47.01 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.+++..+....+-++|..|+||||+|+.+.+...
T Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 35 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 5566666666666689999999999999999999753
No 280
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.29 E-value=0.38 Score=45.27 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..|.+.|+.|+||||+|+.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998854
No 281
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.28 E-value=1.5 Score=45.63 Aligned_cols=28 Identities=32% Similarity=0.267 Sum_probs=24.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIED 160 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~ 160 (769)
..+|.++|.+|+||||++..+...+..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5799999999999999999998876543
No 282
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.22 E-value=1.9 Score=42.52 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=23.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
..+|+++|.+|+||||++..+...+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999886653
No 283
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.20 E-value=0.49 Score=48.97 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=29.2
Q ss_pred HHHHHHhh----cCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALI----DVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~----~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.+++. ......+-|+|..|+||||+|+.+.+...
T Consensus 29 ~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 29 RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp HHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 55666553 34467889999999999999999999764
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.18 E-value=0.38 Score=47.57 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=24.1
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
.-.+|+++|.+|+||||++..+...+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999887653
No 285
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.13 E-value=0.31 Score=45.34 Aligned_cols=32 Identities=28% Similarity=0.189 Sum_probs=24.7
Q ss_pred HHHHHhhcCCccEEEEEccCCCchHHHHHHHHHH
Q 004197 123 AMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 123 ~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+.+.+..+ .+++|+|..|.|||||++.+..-
T Consensus 14 ~~l~~i~~G--e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 14 HYVDAIDTN--TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHC--SEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHhccCC--CEEEEECCCCCCHHHHHHHHhcC
Confidence 344444333 47899999999999999999874
No 286
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.05 E-value=0.34 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.7
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.-.+|||+|..|.||||+++.+...+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998754
No 287
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.89 E-value=0.34 Score=46.18 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 288
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.88 E-value=0.36 Score=45.69 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...|.|.|+.|+||||+|+.+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998853
No 289
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.87 E-value=0.42 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.|.|.|..|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 290
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.69 E-value=0.33 Score=47.71 Aligned_cols=24 Identities=21% Similarity=0.632 Sum_probs=21.2
Q ss_pred CccEEEEEccCCCchHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999873
No 291
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.66 E-value=0.4 Score=48.02 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|+|.|..|+||||+|+.+...+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999854
No 292
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.65 E-value=0.45 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=22.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|.|.|..|.||||+|+.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998854
No 293
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.54 E-value=0.36 Score=46.82 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 294
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.53 E-value=0.39 Score=47.88 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|||.|-.|+||||+++.+..-+
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5599999999999999999987754
No 295
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.48 E-value=0.39 Score=46.24 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.6
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 296
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.43 E-value=0.74 Score=47.68 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=22.2
Q ss_pred EEEEEccCCCchHHHHHHHHHHhh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+.|+|..|+||||+++.+.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999998754
No 297
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.34 E-value=0.34 Score=45.29 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=20.3
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999876
No 298
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.34 E-value=0.43 Score=44.20 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|+.|+||||+++.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998854
No 299
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.19 E-value=0.39 Score=45.89 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 300
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.18 E-value=0.39 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999876
No 301
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.17 E-value=0.39 Score=45.48 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998873
No 302
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.06 E-value=0.39 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999876
No 303
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.01 E-value=0.52 Score=47.84 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=23.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
-.+|+|+|..|+||||+++.+...+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 359999999999999999999987653
No 304
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.00 E-value=0.4 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 305
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.99 E-value=0.42 Score=46.49 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.6
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 306
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.99 E-value=0.4 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.609 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999887
No 307
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.99 E-value=0.4 Score=45.98 Aligned_cols=22 Identities=45% Similarity=0.753 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999877
No 308
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.93 E-value=0.45 Score=44.57 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.|.|.|..|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999774
No 309
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.92 E-value=0.28 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=15.9
Q ss_pred cEEEEEccCCCchHHHHHHHH-HH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFA-RR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~-~~ 156 (769)
.+++|+|..|+||||+++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 64
No 310
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=85.90 E-value=0.97 Score=46.11 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=27.8
Q ss_pred HHHHHhh--cCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 123 AMQTALI--DVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 123 ~i~~~l~--~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+.+.+. ..+..+|+|+|.+|+||||++..+...+.
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444444 34578999999999999999999887654
No 311
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.71 E-value=0.44 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..|.|.|+.|+||||+|+.+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998864
No 312
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.70 E-value=0.42 Score=45.76 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999886
No 313
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.69 E-value=0.43 Score=46.06 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 314
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=85.67 E-value=0.54 Score=49.58 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=23.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-.+|+|+|..|+||||+++.+...+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 45999999999999999999988654
No 315
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.42 E-value=0.44 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999873
No 316
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.34 E-value=0.44 Score=45.80 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+...
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999998853
No 317
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.30 E-value=0.6 Score=46.29 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=23.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
..+|.|+|.+|+||||++..+...+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 469999999999999999999887653
No 318
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.25 E-value=0.45 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999873
No 319
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.22 E-value=0.52 Score=40.84 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-|-|+|-.|.|||++|+.+++..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 35699999999999999999853
No 320
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.22 E-value=0.46 Score=45.57 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999998873
No 321
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=85.21 E-value=0.4 Score=55.31 Aligned_cols=77 Identities=5% Similarity=0.015 Sum_probs=57.8
Q ss_pred Hhhhhhhhhcc-cccccccCCCcchhcccchhhhhhhhHHHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhcC
Q 004197 84 AKFIDDEVTTN-KRCLMGLCPNLKTRYRLSKKAETEEKGLAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKL 162 (769)
Q Consensus 84 ed~~d~~~~~~-~~c~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~ 162 (769)
+...+.++.+. |+||.+ |+.||.++.|.++.... .|+++ | .. -|..+.+++..++.
T Consensus 360 elSYd~Lp~eelK~cFL~-LAIFPed~~I~~elLa~---LW~ae----------------G--ee-dAe~~L~eLvdRSL 416 (1221)
T 1vt4_I 360 ESSLNVLEPAEYRKMFDR-LSVFPPSAHIPTILLSL---IWFDV----------------I--KS-DVMVVVNKLHKYSL 416 (1221)
T ss_dssp HHHHHHSCTTHHHHHHHH-TTSSCTTSCEEHHHHHH---HHCSS----------------C--SH-HHHHHHHHHHTSSS
T ss_pred HHHHHhCCHHHHHHHHHH-HhCCCCCCCCCHHHHHH---HhcCC----------------C--HH-HHHHHHHHHHhhCC
Confidence 33446778888 999999 99999999998877665 45332 2 22 27788899998999
Q ss_pred CCeEEEEEcCCCceEehhHHHHHHHH
Q 004197 163 CDMVVFSEDGSNKFFSMHDVVRDVAI 188 (769)
Q Consensus 163 F~~~~~~~~~~~~~~~~hdl~~dl~~ 188 (769)
|+. ++....|+|||++++++.
T Consensus 417 Lq~-----d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 417 VEK-----QPKESTISIPSIYLELKV 437 (1221)
T ss_dssp SSB-----CSSSSEEBCCCHHHHHHH
T ss_pred EEE-----eCCCCEEEehHHHHHHhc
Confidence 986 234567999999999663
No 322
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.07 E-value=0.47 Score=46.13 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999876
No 323
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.02 E-value=0.53 Score=43.06 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=21.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998873
No 324
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.02 E-value=0.57 Score=43.94 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..|.+.|+.|+||||+|+.+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998864
No 325
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.99 E-value=0.59 Score=44.06 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.|.|.|+.|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998854
No 326
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.92 E-value=0.58 Score=43.75 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.|.|.|+.|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998854
No 327
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.90 E-value=0.49 Score=44.75 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+++|+|..|.|||||++.+....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998743
No 328
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.87 E-value=0.5 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.8
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...+.++|..|.||||||+.+.+..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4679999999999999999999965
No 329
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.86 E-value=0.48 Score=46.34 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998763
No 330
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=84.85 E-value=0.63 Score=45.07 Aligned_cols=26 Identities=42% Similarity=0.507 Sum_probs=22.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..++.+.|.||+||||++..+...+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 46888999999999999999987654
No 331
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=84.75 E-value=0.49 Score=45.56 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998873
No 332
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.73 E-value=0.61 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|+|.|+.|.||||+++.+...+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
No 333
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.71 E-value=1.2 Score=43.74 Aligned_cols=26 Identities=38% Similarity=0.415 Sum_probs=22.7
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...-+-|+|..|+||||+|+.+.+..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34568899999999999999999864
No 334
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.32 E-value=2.2 Score=42.42 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=38.9
Q ss_pred HhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhcCC---CeEEEEEcCCCceEehhHHHHHHHHHHhh
Q 004197 127 ALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLC---DMVVFSEDGSNKFFSMHDVVRDVAISIAF 192 (769)
Q Consensus 127 ~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F---~~~~~~~~~~~~~~~~hdl~~dl~~~~~~ 192 (769)
.+..+....+-|+|..|.|||++++.|.+++...... ....++.-.......-.+....++..+.+
T Consensus 39 ~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g 107 (318)
T 3te6_A 39 SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISK 107 (318)
T ss_dssp HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSC
T ss_pred HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 3335567788999999999999999999987543211 11222221111112334566666666653
No 335
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=84.29 E-value=0.56 Score=45.64 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 336
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=84.17 E-value=0.7 Score=45.00 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=22.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
++|+|.|-||+||||+|-.+...+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~ 27 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA 27 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 57888999999999999999887653
No 337
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.14 E-value=0.39 Score=45.56 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-.+|+|.|..|.||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999998774
No 338
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.09 E-value=0.67 Score=44.00 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=22.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...|.+.|+.|+||||+|+.+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999864
No 339
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=84.05 E-value=0.68 Score=44.33 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=22.7
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...+|.|.|..|+||||+|+.+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 340
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=83.96 E-value=0.6 Score=41.44 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
..|+++|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998865
No 341
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.93 E-value=0.9 Score=46.26 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+.+..++..+....+-++|..|+||||+|+.+.+...
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5666666666555589999999999999999998754
No 342
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.85 E-value=0.78 Score=45.32 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
-.+|+++|.+|+||||++..+...+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999886653
No 343
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.76 E-value=0.48 Score=45.70 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=22.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|.+.|..|.||||+|+.+...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998854
No 344
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.67 E-value=0.63 Score=44.89 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~ 157 (769)
+.|+|..|.||||+|+.+....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999864
No 345
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.54 E-value=0.67 Score=44.80 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=20.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-+-++|..|.||||+|+.+.+..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 47799999999999999999864
No 346
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.48 E-value=0.7 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+.+-++|..|+|||++|+.+.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999976
No 347
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=83.46 E-value=2.8 Score=44.27 Aligned_cols=78 Identities=10% Similarity=0.183 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccCCCcchhcccchhhhhhhhHHHHHHHh--------hcCCccEEE
Q 004197 66 EEKVKKWLVSANNTIEQAAKFIDDEVTTNKRCLMGLCPNLKTRYRLSKKAETEEKGLAMQTAL--------IDVNVSIIG 137 (769)
Q Consensus 66 ~~~~~~W~~~~~~~~~~~ed~~d~~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~l--------~~~~~~vi~ 137 (769)
...++.|..++.++.-.+|..+|- +...- +..+..+..++... ...+.+.+ ..+.+ .|.
T Consensus 162 ~~~~~~~r~~l~~~~a~iEa~iDf-~ed~~---------~~~~~~~~~~i~~l--~~~l~~~~~~~~~~~~~r~~~-kV~ 228 (462)
T 3geh_A 162 AHPIRQLRANCLDILAEIEARIDF-EEDLP---------PLDDEAIISDIENI--AAEISQLLATKDKGELLRTGL-KVA 228 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-SSSSC---------CCCTTTHHHHHHHH--HHHHHHHTTTHHHHHHHHHCE-EEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cccCC---------hhhHHHHHHHHHHH--HHHHHHHHHHhhhhhhhcCCC-EEE
Confidence 567889999999999888888763 11100 00111122222222 01111111 11223 389
Q ss_pred EEccCCCchHHHHHHHHHH
Q 004197 138 VYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 138 I~G~gG~GKTtla~~v~~~ 156 (769)
|+|..|+|||||.+.+..+
T Consensus 229 ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 229 IVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEECTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHhCC
Confidence 9999999999999998774
No 348
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=83.44 E-value=0.7 Score=42.53 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998873
No 349
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=83.43 E-value=0.61 Score=45.13 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.3
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999876
No 350
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=83.41 E-value=0.66 Score=45.68 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+|-+.|..|+||||+|+.+..+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998753
No 351
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=83.40 E-value=0.68 Score=44.80 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-.+++|+|..|.||||+++.+.....
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCC
Confidence 46899999999999999999988543
No 352
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.39 E-value=0.66 Score=45.33 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~ 157 (769)
+.++|..|.||||||+.+....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 7999999999999999999864
No 353
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=83.34 E-value=0.75 Score=40.32 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=20.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..|.++|..|+|||||.+.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998763
No 354
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.28 E-value=0.66 Score=46.72 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
...+-|+|..|+||||+|+.+.+....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 457889999999999999999997643
No 355
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=83.05 E-value=0.62 Score=42.25 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.7
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
-|.|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998765
No 356
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=82.99 E-value=1.2 Score=42.08 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=25.4
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCCeE
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMV 166 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~ 166 (769)
..|.|.|..|+||||+++.+.+.+.. .++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~ 57 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK--DYDVI 57 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT--TSCEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc--CCCce
Confidence 57899999999999999999997654 34443
No 357
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.98 E-value=0.47 Score=46.79 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=20.2
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+..+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988543
No 358
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=82.95 E-value=0.88 Score=44.88 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=23.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
.++|+|.|.||+||||+|-.+...+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 468889999999999999999887653
No 359
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=82.86 E-value=0.68 Score=45.72 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=22.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
=.+++|+|..|.|||||++.+..-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3689999999999999999998854
No 360
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=82.84 E-value=7.7 Score=39.35 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.1
Q ss_pred CccEEEEEccCCCchHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
....|+++|..|+|||||.+.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999988765
No 361
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=82.80 E-value=0.5 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
=.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999998876
No 362
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=82.76 E-value=0.91 Score=42.37 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.3
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+.+||-|.|..|+||+|.|+.+.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999864
No 363
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=82.70 E-value=0.75 Score=41.74 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
+.|-|.|.+|+|||||++.+..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999875
No 364
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=82.52 E-value=0.67 Score=45.57 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.3
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999876
No 365
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=82.48 E-value=0.65 Score=48.60 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=23.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
..+|.|+|.+|+||||++..+...+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999887653
No 366
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=82.46 E-value=0.74 Score=40.48 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.|.++|.+|+|||||.+.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 367
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=82.35 E-value=0.76 Score=41.79 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.|.++|.+|+|||||++.+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999998864
No 368
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.29 E-value=0.79 Score=45.57 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.5
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|+|..|+||||+|+.+...+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998853
No 369
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.22 E-value=0.73 Score=43.15 Aligned_cols=22 Identities=36% Similarity=0.378 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.++.|+|.+|+||||++..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999877
No 370
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.08 E-value=0.78 Score=43.81 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..|.|.|..|+||||+++.+.+.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 371
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=82.07 E-value=0.81 Score=40.44 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=20.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-.|.++|.+|+|||||.+.+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999998763
No 372
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=82.07 E-value=0.79 Score=41.44 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+..|+|..|.||||+++.|+--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 373
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.02 E-value=0.82 Score=44.22 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=21.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+-|-++|..|.||||+|+.+.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999964
No 374
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=81.76 E-value=0.8 Score=46.45 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=20.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||++.+.-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 5899999999999999999886
No 375
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.70 E-value=0.82 Score=44.79 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEccCCCchHHHHHHHHHHh
Q 004197 136 IGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~ 157 (769)
+.|+|..|.||||+|+.+....
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8899999999999999999864
No 376
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=81.68 E-value=0.64 Score=46.60 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.3
Q ss_pred CccEEEEEccCCCchHHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+.++.|.|..|.||||+.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3679999999999999999998874
No 377
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=81.56 E-value=1.3 Score=46.59 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..-+-|+|..|+||||||+.+.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999764
No 378
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.52 E-value=0.93 Score=39.11 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.0
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|-|+|-.|.|||++|+.+.+.
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 569999999999999999884
No 379
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=81.48 E-value=0.82 Score=41.43 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.8
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
..|+++|..|+|||||.+.+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998876
No 380
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.29 E-value=0.9 Score=45.11 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+.|-++|..|.||||+|+.+.+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 4578999999999999999999964
No 381
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=81.24 E-value=1.1 Score=42.29 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.0
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+++|+|..|.||||+++.+.....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5889999999999999999986544
No 382
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=81.09 E-value=0.99 Score=47.56 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=28.4
Q ss_pred HHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 123 AMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 123 ~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+...+..+....+-+||-.|+||||+|+.+.+..
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 44455556667788999999999999999999964
No 383
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=81.04 E-value=0.93 Score=39.99 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.4
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.++|..|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998763
No 384
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.02 E-value=1.6 Score=42.51 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=26.6
Q ss_pred HHHHHhh---cCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 123 AMQTALI---DVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 123 ~i~~~l~---~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+.+.+. .....-+-++|..|+|||++|+.+.+..
T Consensus 51 ~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 51 LLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp HHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444554 3345678899999999999999999963
No 385
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=80.92 E-value=0.81 Score=40.93 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..|+|+|..|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998763
No 386
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=80.84 E-value=0.95 Score=39.89 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.-|.++|..|+|||||.+.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999988764
No 387
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.76 E-value=1.1 Score=41.05 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=21.2
Q ss_pred HHHHHhhcCCccEEEEEccCCCchHHHHHHHHHH
Q 004197 123 AMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 123 ~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
+.+........--|.++|..|+|||||.+.+.+.
T Consensus 18 ~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 18 LYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ---------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cchhccCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 4444433334456899999999999999988773
No 388
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=80.74 E-value=0.94 Score=44.97 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+|-|.|..|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 389
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=80.59 E-value=1 Score=41.01 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
...|.++|..|+|||||.+.+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998773
No 390
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.59 E-value=1.7 Score=43.95 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+...+..++..-+.++|..|.||||+|+.+.....
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4455555566555589999999999999999998754
No 391
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=80.50 E-value=1.2 Score=41.20 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=21.9
Q ss_pred cEEEEE-ccCCCchHHHHHHHHHHhhh
Q 004197 134 SIIGVY-GMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 134 ~vi~I~-G~gG~GKTtla~~v~~~~~~ 159 (769)
++|+|+ +.||+||||+|-.+...+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~ 28 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR 28 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 578888 67899999999999887654
No 392
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=80.32 E-value=0.98 Score=41.22 Aligned_cols=23 Identities=39% Similarity=0.304 Sum_probs=19.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
--|.++|..|+|||||.+.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999777663
No 393
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=80.32 E-value=1.1 Score=40.99 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=30.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEEEEcCCCceEehhHHHHH-HH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVFSEDGSNKFFSMHDVVRD-VA 187 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~~~~~~~~~~~~hdl~~d-l~ 187 (769)
..+|+|.||.|+||+|.|+.+-+.+. ++ ....+.|-|.+++ .|
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g----~~--------~~~vv~msD~iK~~~a 54 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLG----AD--------VCAVLRLSGPLKEQYA 54 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHC----TT--------TEEEECTHHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcC----CC--------CceEEEccHHHHHHHH
Confidence 46999999999999999988866331 11 1233678888884 44
No 394
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=80.26 E-value=1 Score=39.89 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
--|.++|..|+|||||.+.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999888763
No 395
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=80.13 E-value=1.3 Score=40.62 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.4
Q ss_pred EEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 136 IGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
|.|=|..|+||||.++.+.+.+..++
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 67889999999999999999876543
No 396
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=79.96 E-value=1.5 Score=40.90 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=23.8
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhhcCCCeEE
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVV 167 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~ 167 (769)
.|-+.|.||+||||+|-.+......++ .+..+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~~V~v 39 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-VRVMA 39 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-CCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-CCEEE
Confidence 366789999999999998888765443 34433
No 397
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=79.94 E-value=0.96 Score=43.11 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.++.|+|..|+||||++..+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999999998875
No 398
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=79.90 E-value=1.1 Score=39.32 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEccCCCchHHHHHHHHHH
Q 004197 136 IGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 136 i~I~G~gG~GKTtla~~v~~~ 156 (769)
|.++|..|+|||||.+.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998763
No 399
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=79.88 E-value=1 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||.+.+.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999986
No 400
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.87 E-value=0.93 Score=44.44 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=21.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.++.|+|..|.|||||+..+.....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999887543
No 401
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=79.87 E-value=0.95 Score=40.07 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.4
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
-|.++|..|+|||||.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999988753
No 402
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=79.80 E-value=1.1 Score=40.67 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.2
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
--|.|+|.+|+|||||.+.+.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999988766
No 403
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=79.73 E-value=1 Score=42.20 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+|+|.|+.|+||||+|+.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 404
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=79.68 E-value=0.88 Score=45.15 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
-|+|+|-.|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999886
No 405
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=79.62 E-value=0.95 Score=39.92 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.1
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
-|.++|..|+|||||.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999987753
No 406
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=79.59 E-value=0.97 Score=40.26 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.2
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
--|.++|..|+|||||.+.+.+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3589999999999999988765
No 407
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=79.57 E-value=1.1 Score=40.26 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=20.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..-|.++|..|+|||||.+.+.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998874
No 408
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=79.55 E-value=1.2 Score=41.77 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
-.+||.|+.|+||||.|+.+.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998854
No 409
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=79.52 E-value=1.1 Score=40.59 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=19.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
--|.++|.+|+|||||.+.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999988763
No 410
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=79.41 E-value=1.2 Score=41.04 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=22.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHHh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+|.|.|+.|.||||+|+.+.+.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999965
No 411
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.35 E-value=1.1 Score=45.79 Aligned_cols=25 Identities=24% Similarity=0.076 Sum_probs=22.3
Q ss_pred CccEEEEEccCCCchHHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.-.+++|+|..|.||||+++.+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3469999999999999999999974
No 412
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=79.34 E-value=1.1 Score=39.54 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.++|..|+|||||.+.+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999998764
No 413
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=79.23 E-value=1 Score=44.51 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.6
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
.+++|+|..|+|||||++.+......
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 48899999999999999999886543
No 414
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=79.22 E-value=1.1 Score=39.27 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=19.2
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.++|..|+|||||.+.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999887763
No 415
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=79.21 E-value=1.2 Score=44.18 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...+-++|..|.||||+|+.+.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999864
No 416
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=79.21 E-value=1.1 Score=45.48 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.6
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||.+.+.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999987
No 417
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=79.17 E-value=1.2 Score=39.45 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.3
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.++|..|+|||||.+.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 418
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=79.06 E-value=1 Score=39.86 Aligned_cols=21 Identities=43% Similarity=0.955 Sum_probs=18.9
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
-|.++|..|+|||||.+.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999998876
No 419
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.02 E-value=1.2 Score=45.39 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=27.8
Q ss_pred HHHHHHh-hcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 122 LAMQTAL-IDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 122 ~~i~~~l-~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+.+++ ..++...+.++|..|.||||+|+.+....
T Consensus 24 ~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 24 NFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp HHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4555555 44444458999999999999999998864
No 420
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=78.99 E-value=4.5 Score=45.29 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccCCCcchhcccchhhhhhhhHHHHHHHhhcCCccEEEEEccCCCch
Q 004197 67 EKVKKWLVSANNTIEQAAKFIDDEVTTNKRCLMGLCPNLKTRYRLSKKAETEEKGLAMQTALIDVNVSIIGVYGMGGIGK 146 (769)
Q Consensus 67 ~~~~~W~~~~~~~~~~~ed~~d~~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gG~GK 146 (769)
..+..|..++.++...++..+|........ ....-.+...+..+ ...++.+..+ .-.|+|+|..|+||
T Consensus 15 ~~~~~~r~~L~~~l~~le~~ld~~e~~~~~--------~~~~~~l~~~l~~L---~~~~~~l~~~-~~~V~VvG~~naGK 82 (695)
T 2j69_A 15 ERVAQVRSEMSVCLNKLAETINKAELAGDS--------SSGKLSLERDIEDI---TIASKNLQQG-VFRLLVLGDMKRGK 82 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--------TTCCCCCHHHHHHH---HHHHHHHHHC-CEEEEEECCTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccc--------chhhhHHHHHHHHH---HHHHHHhccC-CCEEEEECCCCCCH
Confidence 466788888888888888887653211000 00111233333333 3444444444 45689999999999
Q ss_pred HHHHHHHHHH
Q 004197 147 TTLVKEFARR 156 (769)
Q Consensus 147 Ttla~~v~~~ 156 (769)
|||.+.+...
T Consensus 83 SSLlNaLlg~ 92 (695)
T 2j69_A 83 STFLNALIGE 92 (695)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhCC
Confidence 9999998864
No 421
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=78.96 E-value=1.4 Score=43.88 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+.+.+..+....+-++|..|+||||+|+.+.+..
T Consensus 27 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 27 QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp HHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 455555555555558999999999999999999875
No 422
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=78.91 E-value=1.4 Score=45.79 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
..+|.++|.+|+||||++..+...+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987653
No 423
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=78.87 E-value=1.1 Score=45.38 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 5899999999999999999987
No 424
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=78.82 E-value=1.2 Score=40.45 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=19.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
--|.++|.+|+|||||.+.+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46789999999999999888763
No 425
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=78.76 E-value=1.2 Score=40.10 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.--|.++|..|+|||||.+.+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346799999999999999998864
No 426
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=78.69 E-value=1.6 Score=40.61 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=25.8
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEE
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVV 167 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~ 167 (769)
..|.+-|..|+||||+++.+.+.+..+ .+....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~ 39 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQL 39 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCccc
Confidence 478899999999999999999877543 344443
No 427
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=78.67 E-value=1.1 Score=45.37 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999987
No 428
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=78.65 E-value=1.2 Score=39.27 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.++|..|+|||||.+.+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988763
No 429
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=78.65 E-value=1.2 Score=39.75 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.8
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..-|.++|..|+|||||.+.+.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 446899999999999999998874
No 430
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=78.52 E-value=1.5 Score=46.78 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
.++|.|+|.+|+||||++..+...+..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 569999999999999999999887653
No 431
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=78.50 E-value=1.2 Score=45.59 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999999987
No 432
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=78.48 E-value=1.2 Score=39.85 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=20.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..-|.++|..|+|||||.+.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988763
No 433
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=78.38 E-value=1.6 Score=40.77 Aligned_cols=35 Identities=31% Similarity=0.221 Sum_probs=27.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhhhhcCCCeEE
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVV 167 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~ 167 (769)
-..|.+.|..|+||||+++.+.+.+.....+....
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 45889999999999999999999876523345544
No 434
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=78.34 E-value=1.6 Score=43.47 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=23.3
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
...+-++|..|+|||+||+.+.+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999765
No 435
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=78.31 E-value=1.1 Score=40.09 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=19.8
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.--|.++|..|+|||||.+.+.+
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999988765
No 436
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=78.30 E-value=1.3 Score=39.61 Aligned_cols=22 Identities=27% Similarity=0.606 Sum_probs=19.6
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
--|.++|..|+|||||.+.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999876
No 437
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=78.27 E-value=1.7 Score=41.16 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=25.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhcCCC
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDKLCD 164 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~ 164 (769)
..|.|.|..|+||||+++.+.+.+... .+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~ 57 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQN-GID 57 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHT-TCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc-CCC
Confidence 588999999999999999999987643 345
No 438
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=78.26 E-value=1.2 Score=45.44 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||.+.+.-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5899999999999999999987
No 439
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=78.25 E-value=0.97 Score=48.88 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.2
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
-.+|.|+|+.|.||||+++.+...+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 36899999999999999999998764
No 440
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=78.21 E-value=1.1 Score=45.84 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...++|+|..|.|||||++.+..-+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998853
No 441
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=78.19 E-value=1.3 Score=40.11 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-|.++|..|+|||||.+.+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998864
No 442
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=78.18 E-value=0.95 Score=41.49 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.0
Q ss_pred ccEEEEEccCCCchHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFA 154 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~ 154 (769)
.-.|.++|.+|+|||||.+.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999988874
No 443
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=78.17 E-value=1 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+|-|+|..|+||||||..+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999884
No 444
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=78.10 E-value=0.7 Score=42.88 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=20.3
Q ss_pred CccEEEEEccCCCchHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.-..|+|+|..|+|||||.+.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345799999999999999887754
No 445
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=78.08 E-value=1.2 Score=40.45 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.7
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
..|.++|.+|+|||||.+.+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4679999999999999998876
No 446
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=77.99 E-value=1.8 Score=40.31 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=24.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhhhc
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~~~ 161 (769)
..|.+-|..|+||||.++.+.+.+....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4688999999999999999999876544
No 447
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=77.95 E-value=1.3 Score=44.89 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.4
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
=.+++|+|-.|.|||||++.+.+..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999999964
No 448
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=77.95 E-value=1.2 Score=45.18 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.3
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
+..+|+|+|..|+|||||.+.+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 367899999999999999999987543
No 449
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=77.87 E-value=1.3 Score=43.62 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.+|.|.|..|+||||||..+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 57899999999999999999884
No 450
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=77.84 E-value=1.6 Score=39.24 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=20.5
Q ss_pred CccEEEEEccCCCchHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
....|.++|.+|+|||||.+.+.+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 455789999999999999988765
No 451
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=77.83 E-value=1.1 Score=41.26 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=19.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
...|.++|.+|+|||||.+.+.+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34678999999999999988764
No 452
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=77.79 E-value=1.3 Score=40.28 Aligned_cols=24 Identities=38% Similarity=0.636 Sum_probs=20.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.--|.|+|..|+|||||.+.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999988773
No 453
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=77.75 E-value=1.3 Score=39.11 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.4
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
--|.++|..|+|||||.+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3578999999999999998876
No 454
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=77.72 E-value=1.3 Score=40.31 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=21.5
Q ss_pred CccEEEEEccCCCchHHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
+...|.++|..|+|||||.+.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988763
No 455
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=77.70 E-value=1.3 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||.+.+.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5899999999999999999987
No 456
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=77.65 E-value=2.2 Score=45.28 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 122 LAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 122 ~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
..+.+.+......-+=++|-.|+|||++|+.+....
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 456666654444456799999999999999999875
No 457
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=77.63 E-value=1.5 Score=39.15 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.8
Q ss_pred CccEEEEEccCCCchHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
+...|.++|..|+|||||.+.+.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999998866
No 458
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=77.53 E-value=1.6 Score=43.93 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=23.7
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..-.+++|+|..|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3457899999999999999999987543
No 459
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=77.49 E-value=1.8 Score=40.23 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=21.6
Q ss_pred EEEEE-ccCCCchHHHHHHHHHHhhhhc
Q 004197 135 IIGVY-GMGGIGKTTLVKEFARRAIEDK 161 (769)
Q Consensus 135 vi~I~-G~gG~GKTtla~~v~~~~~~~~ 161 (769)
+|+|+ +.||+||||+|-.+...+..++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g 29 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG 29 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC
Confidence 56776 6789999999999998776443
No 460
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=77.49 E-value=1.3 Score=40.69 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.9
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..-|.++|..|+|||||.+.+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456899999999999999998873
No 461
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=77.48 E-value=1.4 Score=39.01 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
..|.++|..|+|||||.+.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999998866
No 462
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.41 E-value=1.4 Score=40.06 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
--|.|+|..|+|||||.+.+.+.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35789999999999999998874
No 463
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=77.30 E-value=1.4 Score=39.62 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.6
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
..|.++|..|+|||||.+.+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4688999999999999998875
No 464
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.25 E-value=2.3 Score=43.55 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHHHHhhcCCc--cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 123 AMQTALIDVNV--SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 123 ~i~~~l~~~~~--~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+.+.+..... ..+-++|..|+|||++|+.+.+...
T Consensus 58 ~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 58 VVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp HHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44555555443 4788999999999999999999764
No 465
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=77.21 E-value=2.4 Score=43.35 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCc-cEEEEEccCCCchHHHHHHHHHHhh
Q 004197 122 LAMQTALIDVNV-SIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 122 ~~i~~~l~~~~~-~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
..+.+.+..+.. ..+-|+|..|+||||+|+.+.+...
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455555555543 4678999999999999999988653
No 466
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=77.17 E-value=1.4 Score=39.48 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.3
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
--|.++|..|+|||||.+.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999988776
No 467
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=77.12 E-value=1.2 Score=46.12 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEccCCCchHHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~ 156 (769)
-++|+|..|+|||||++.+...
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999999873
No 468
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=77.10 E-value=1.9 Score=43.68 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=25.1
Q ss_pred HhhcCCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 127 ALIDVNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 127 ~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+....-.+|+|+|..|.||||+++.+.....
T Consensus 117 ~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 117 RVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp HHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 33434446999999999999999999987543
No 469
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=77.10 E-value=1.6 Score=40.39 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=24.9
Q ss_pred EEEEEccCCCchHHHHHHHHHHhhhhcCCCeEEE
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRAIEDKLCDMVVF 168 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~~~~~~F~~~~~ 168 (769)
-|.|-|..|+||||.++.+.+.+. ..++.+..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~--~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV--KDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT--TTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEe
Confidence 578899999999999999999874 34444443
No 470
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.08 E-value=1.7 Score=40.50 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.7
Q ss_pred CccEEEEEccCCCchHHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
....|.++|..|+|||||.+.+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998874
No 471
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=76.99 E-value=2.9 Score=46.05 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=56.8
Q ss_pred hhhhhhhhcccccccccCCCcchhcccchhhhhhhhHHHHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHhhhhcCCC
Q 004197 85 KFIDDEVTTNKRCLMGLCPNLKTRYRLSKKAETEEKGLAMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRAIEDKLCD 164 (769)
Q Consensus 85 d~~d~~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~~~~~~F~ 164 (769)
..++.++...+.||.+ ++.||.++.+....... .| |.. +. -+..+.+.+..++.+.
T Consensus 370 ~s~~~L~~~~~~~l~~-la~f~~~~~i~~~~l~~---l~----------------~~~--~~--~~~~~l~~L~~~~Ll~ 425 (591)
T 1z6t_A 370 ISVEMLREDIKDYYTD-LSILQKDVKVPTKVLCI---LW----------------DME--TE--EVEDILQEFVNKSLLF 425 (591)
T ss_dssp HHHHTSCTTTHHHHHH-GGGCCTTCCEEHHHHHH---HH----------------TCC--HH--HHHHHHHHHHHTTSSE
T ss_pred HHHHhCCHHHHHHHHH-ccccCCCCccCHHHHHH---Hh----------------ccC--HH--HHHHHHHHHHhCcCeE
Confidence 3346778888999999 99999988888765553 23 111 11 2567777777788876
Q ss_pred eEEEEEcCCCceEehhHHHHHHHHHHh
Q 004197 165 MVVFSEDGSNKFFSMHDVVRDVAISIA 191 (769)
Q Consensus 165 ~~~~~~~~~~~~~~~hdl~~dl~~~~~ 191 (769)
.. .++....|+||+++|+++....
T Consensus 426 ~~---~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 426 CD---RNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EE---EETTEEEEECCHHHHHHHHHHT
T ss_pred Ee---cCCCccEEEEcHHHHHHHHhhh
Confidence 33 3455567999999999998773
No 472
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=76.97 E-value=1.7 Score=40.13 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.5
Q ss_pred EEEEEccCCCchHHHHHHHHHHh
Q 004197 135 IIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
+|-|.|..|+||+|.|+.+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999864
No 473
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=76.94 E-value=1.1 Score=45.38 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.5
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.+++|+|..|.|||||.+.+.-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999986
No 474
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=76.91 E-value=1.4 Score=40.49 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
...|.|+|..|+|||||.+.+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999988764
No 475
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=76.89 E-value=1.4 Score=39.63 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.2
Q ss_pred CCccEEEEEccCCCchHHHHHHHHH
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.....|.++|..|+|||||.+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4456789999999999999876653
No 476
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=76.87 E-value=1.4 Score=40.55 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=20.6
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
...|.|+|..|+|||||.+.+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 446899999999999999988763
No 477
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=76.85 E-value=1.5 Score=39.56 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.-|.++|..|+|||||.+.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46889999999999999998864
No 478
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=76.82 E-value=1.4 Score=44.61 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=23.9
Q ss_pred CCccEEEEEccCCCchHHHHHHHHHHhh
Q 004197 131 VNVSIIGVYGMGGIGKTTLVKEFARRAI 158 (769)
Q Consensus 131 ~~~~vi~I~G~gG~GKTtla~~v~~~~~ 158 (769)
.+..+|+|+|.+|+||||+++.+.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999887543
No 479
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=76.82 E-value=1.4 Score=40.57 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=20.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
..-|.++|..|+|||||.+.+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999988763
No 480
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=76.81 E-value=1.5 Score=39.53 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
-|.++|..|+|||||.+.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999988776
No 481
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=76.81 E-value=1.4 Score=39.68 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
--|.++|..|+|||||.+.+.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998764
No 482
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=76.81 E-value=1.3 Score=43.90 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
...|+|+|..|+|||||.+.+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35799999999999999999876
No 483
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=76.78 E-value=1.3 Score=39.59 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=19.7
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
--|.++|..|+|||||.+.+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999988763
No 484
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.77 E-value=2.4 Score=45.71 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.7
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+.+-|+|..|+||||+|+.+.+..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4688999999999999999999965
No 485
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=76.74 E-value=1.1 Score=40.96 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.1
Q ss_pred ccEEEEEccCCCchHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
.--|.++|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34678999999999999886655
No 486
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=76.67 E-value=1.9 Score=40.36 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=23.8
Q ss_pred hcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 129 IDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 129 ~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...+..+|+|-|+.|.||||+|+.+.+.+
T Consensus 10 m~~~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 10 MGNKNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 33445699999999999999999999865
No 487
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=76.64 E-value=1.5 Score=39.28 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
--|.++|..|+|||||.+.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999888763
No 488
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.59 E-value=1.1 Score=44.92 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.0
Q ss_pred ccEEEEEccCCCchHHHHHHHHHHh
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...+-|+|..|+||||+|+.+.+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999864
No 489
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=76.58 E-value=1.4 Score=40.02 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.2
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
--|.|+|..|+|||||.+.+.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998773
No 490
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=76.56 E-value=1.4 Score=40.65 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.5
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
.--|.++|..|+|||||.+.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999988773
No 491
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.56 E-value=1.5 Score=43.69 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.3
Q ss_pred cEEEEEccCCCchHHHHHHHHHHhhh
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARRAIE 159 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~~~~ 159 (769)
..+-++|..|+|||++|+.+.+....
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999987644
No 492
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=76.53 E-value=1.3 Score=42.15 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.4
Q ss_pred CccEEEEEccCCCchHHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
....|+++|..|+|||||.+.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3567899999999999999988763
No 493
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=76.52 E-value=1.1 Score=46.69 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.8
Q ss_pred CccEEEEEccCCCchHHHHHHHHHHh
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
...+|-|+|+.|+||||+|+.+..+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999988753
No 494
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=76.51 E-value=1.5 Score=39.78 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.7
Q ss_pred cEEEEEccCCCchHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~ 155 (769)
--|.|+|..|+|||||.+.+.+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999998876
No 495
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=76.44 E-value=2.8 Score=43.59 Aligned_cols=35 Identities=29% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHHHhhcCCccEEEEEccCCCchHHHHHHHHHHh
Q 004197 123 AMQTALIDVNVSIIGVYGMGGIGKTTLVKEFARRA 157 (769)
Q Consensus 123 ~i~~~l~~~~~~vi~I~G~gG~GKTtla~~v~~~~ 157 (769)
.+...+....-.+++|+|..|.||||+++.+....
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34444444455799999999999999999998854
No 496
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=76.40 E-value=1.2 Score=40.42 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=20.8
Q ss_pred ccEEEEEccCCCchHHHHHHHHHH
Q 004197 133 VSIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 133 ~~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
...|.++|..|+|||||.+.+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999988764
No 497
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=76.39 E-value=1.7 Score=44.99 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.7
Q ss_pred CccEEEEEccCCCchHHHHHHHHH
Q 004197 132 NVSIIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 132 ~~~vi~I~G~gG~GKTtla~~v~~ 155 (769)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 356999999999999999999987
No 498
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=76.39 E-value=1.5 Score=39.15 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.9
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
--|.++|..|+|||||.+.+.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36799999999999999988763
No 499
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=76.34 E-value=1.2 Score=39.93 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.0
Q ss_pred EEEEEccCCCchHHHHHHHHH
Q 004197 135 IIGVYGMGGIGKTTLVKEFAR 155 (769)
Q Consensus 135 vi~I~G~gG~GKTtla~~v~~ 155 (769)
-|.++|.+|+|||||.+.+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998876
No 500
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=76.27 E-value=1.5 Score=39.88 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.1
Q ss_pred cEEEEEccCCCchHHHHHHHHHH
Q 004197 134 SIIGVYGMGGIGKTTLVKEFARR 156 (769)
Q Consensus 134 ~vi~I~G~gG~GKTtla~~v~~~ 156 (769)
--|.++|..|+|||||.+.+.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999988774
Done!