Query 004198
Match_columns 769
No_of_seqs 509 out of 4111
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 19:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 8.5E-57 1.8E-61 433.5 18.7 218 531-768 3-221 (303)
2 KOG0373 Serine/threonine speci 100.0 9.3E-52 2E-56 391.6 16.2 217 532-768 7-224 (306)
3 KOG0374 Serine/threonine speci 100.0 6.7E-49 1.5E-53 414.7 18.5 229 531-769 9-240 (331)
4 cd07420 MPP_RdgC Drosophila me 100.0 7.7E-46 1.7E-50 391.1 22.4 222 531-769 7-260 (321)
5 KOG0375 Serine-threonine phosp 100.0 5.5E-47 1.2E-51 382.1 12.4 183 553-746 60-242 (517)
6 PTZ00480 serine/threonine-prot 100.0 1.4E-45 3.1E-50 388.4 20.8 226 531-769 11-238 (320)
7 cd07419 MPP_Bsu1_C Arabidopsis 100.0 7.9E-45 1.7E-49 386.5 20.9 235 534-768 1-248 (311)
8 KOG0371 Serine/threonine prote 100.0 2.2E-45 4.9E-50 356.8 13.1 218 531-768 20-238 (319)
9 PTZ00239 serine/threonine prot 100.0 2.7E-44 5.9E-49 378.1 22.1 218 531-768 3-221 (303)
10 PTZ00244 serine/threonine-prot 100.0 1.9E-44 4.1E-49 378.2 20.6 226 530-768 3-230 (294)
11 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 1.8E-44 3.8E-49 379.3 19.4 226 531-769 2-229 (293)
12 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 3.1E-44 6.7E-49 376.0 21.0 219 531-769 2-221 (285)
13 cd07416 MPP_PP2B PP2B, metallo 100.0 2.1E-43 4.5E-48 373.7 22.2 217 532-769 4-229 (305)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 4.7E-43 1E-47 374.6 22.8 235 528-769 9-280 (377)
15 cd07417 MPP_PP5_C PP5, C-termi 100.0 7.3E-43 1.6E-47 369.9 20.3 223 527-769 12-240 (316)
16 smart00156 PP2Ac Protein phosp 100.0 9E-43 2E-47 364.0 19.8 204 555-769 2-207 (271)
17 PLN02193 nitrile-specifier pro 100.0 8.8E-38 1.9E-42 354.3 38.3 304 17-362 150-469 (470)
18 PLN02153 epithiospecifier prot 100.0 3E-37 6.5E-42 337.3 37.5 306 15-361 4-339 (341)
19 KOG4693 Uncharacterized conser 100.0 5.1E-37 1.1E-41 300.1 24.5 297 27-362 11-346 (392)
20 PLN02193 nitrile-specifier pro 100.0 1.3E-33 2.8E-38 320.3 37.0 281 45-368 120-417 (470)
21 KOG4152 Host cell transcriptio 100.0 2.5E-35 5.4E-40 309.5 20.5 302 23-362 26-364 (830)
22 KOG1230 Protein containing rep 100.0 1.2E-34 2.5E-39 299.1 22.6 325 19-364 56-474 (521)
23 KOG4441 Proteins containing BT 100.0 5.2E-33 1.1E-37 319.3 30.7 271 45-369 284-554 (571)
24 KOG4441 Proteins containing BT 100.0 1.2E-32 2.5E-37 316.4 28.7 257 5-306 298-556 (571)
25 TIGR03547 muta_rot_YjhT mutatr 100.0 1E-31 2.2E-36 294.6 32.7 279 24-359 2-344 (346)
26 KOG4693 Uncharacterized conser 100.0 1E-32 2.2E-37 270.0 20.8 241 12-278 48-312 (392)
27 KOG0379 Kelch repeat-containin 100.0 1.1E-31 2.3E-36 303.8 30.1 297 23-362 54-358 (482)
28 PLN02153 epithiospecifier prot 100.0 4.4E-31 9.5E-36 288.7 33.6 262 83-368 5-291 (341)
29 PRK14131 N-acetylneuraminic ac 100.0 3.8E-31 8.3E-36 292.6 32.0 288 19-362 18-369 (376)
30 PHA02713 hypothetical protein; 100.0 7.5E-32 1.6E-36 311.0 27.2 253 10-308 274-545 (557)
31 PHA02713 hypothetical protein; 100.0 2.9E-31 6.3E-36 306.1 31.5 252 75-369 272-541 (557)
32 TIGR03548 mutarot_permut cycli 100.0 2.3E-30 5E-35 281.0 31.5 275 28-348 2-314 (323)
33 KOG0377 Protein serine/threoni 100.0 5.2E-32 1.1E-36 280.1 8.8 206 553-768 133-368 (631)
34 KOG0379 Kelch repeat-containin 100.0 2.2E-29 4.8E-34 285.0 27.5 254 92-370 53-310 (482)
35 PHA03098 kelch-like protein; P 100.0 5.1E-29 1.1E-33 289.0 29.9 253 12-308 268-523 (534)
36 PHA03098 kelch-like protein; P 100.0 1.1E-28 2.4E-33 286.1 30.5 254 75-367 264-517 (534)
37 KOG1230 Protein containing rep 100.0 1.6E-28 3.5E-33 253.9 17.0 216 12-243 102-342 (521)
38 TIGR03548 mutarot_permut cycli 100.0 5.5E-27 1.2E-31 254.5 28.0 230 19-281 52-316 (323)
39 PRK14131 N-acetylneuraminic ac 99.9 6E-26 1.3E-30 251.2 27.6 257 12-302 54-374 (376)
40 PHA02790 Kelch-like protein; P 99.9 1.3E-25 2.7E-30 255.7 30.1 208 45-304 271-478 (480)
41 TIGR03547 muta_rot_YjhT mutatr 99.9 2.2E-25 4.7E-30 244.5 28.0 247 12-293 33-343 (346)
42 KOG4152 Host cell transcriptio 99.9 2.7E-26 5.8E-31 241.8 17.8 259 12-296 61-363 (830)
43 KOG0376 Serine-threonine phosp 99.9 3.5E-27 7.6E-32 251.9 8.8 201 554-764 183-389 (476)
44 PHA02790 Kelch-like protein; P 99.9 3.5E-24 7.7E-29 243.9 28.9 210 105-367 267-476 (480)
45 cd00144 MPP_PPP_family phospho 99.9 9.6E-23 2.1E-27 209.6 13.6 152 584-749 1-158 (225)
46 PRK13625 bis(5'-nucleosyl)-tet 99.9 4.1E-21 8.9E-26 199.2 13.3 131 582-714 2-146 (245)
47 cd07422 MPP_ApaH Escherichia c 99.8 1.1E-20 2.5E-25 195.1 11.7 120 583-714 1-125 (257)
48 TIGR00668 apaH bis(5'-nucleosy 99.8 2E-20 4.2E-25 193.0 13.1 120 582-714 2-127 (279)
49 cd07423 MPP_PrpE Bacillus subt 99.8 2.6E-20 5.6E-25 192.3 12.7 130 582-714 2-143 (234)
50 cd07413 MPP_PA3087 Pseudomonas 99.8 5.3E-20 1.2E-24 187.9 12.5 125 584-713 2-145 (222)
51 PRK11439 pphA serine/threonine 99.8 1.1E-19 2.3E-24 185.5 13.7 120 581-711 17-146 (218)
52 cd07421 MPP_Rhilphs Rhilph pho 99.8 6.8E-20 1.5E-24 188.6 11.6 159 582-746 3-244 (304)
53 PRK00166 apaH diadenosine tetr 99.8 3.2E-19 6.9E-24 186.5 13.4 121 582-714 2-127 (275)
54 cd07424 MPP_PrpA_PrpB PrpA and 99.8 1.6E-18 3.4E-23 175.7 15.4 149 581-747 1-159 (207)
55 PHA02239 putative protein phos 99.8 1.2E-18 2.6E-23 178.5 13.6 140 582-744 2-184 (235)
56 PRK09968 serine/threonine-spec 99.7 9.2E-18 2E-22 170.9 12.6 120 581-711 15-144 (218)
57 cd07425 MPP_Shelphs Shewanella 99.7 4.6E-18 9.9E-23 171.8 9.4 130 584-714 1-141 (208)
58 COG3055 Uncharacterized protei 99.7 7.3E-16 1.6E-20 159.0 23.7 284 21-360 28-373 (381)
59 KOG2437 Muskelin [Signal trans 99.7 2.6E-18 5.7E-23 181.7 3.6 315 25-362 256-613 (723)
60 COG3055 Uncharacterized protei 99.6 6.9E-14 1.5E-18 144.5 17.9 241 15-284 67-365 (381)
61 KOG2437 Muskelin [Signal trans 99.5 3.3E-14 7.1E-19 151.0 5.9 205 138-356 239-466 (723)
62 PF13964 Kelch_6: Kelch motif 98.8 8.3E-09 1.8E-13 79.2 6.6 50 29-100 1-50 (50)
63 PF13964 Kelch_6: Kelch motif 98.8 1.2E-08 2.7E-13 78.2 6.4 50 99-153 1-50 (50)
64 PLN02772 guanylate kinase 98.8 3.6E-08 7.7E-13 106.7 11.3 88 26-135 21-109 (398)
65 PLN02772 guanylate kinase 98.8 3.7E-08 8E-13 106.6 10.9 89 97-189 22-110 (398)
66 PF13415 Kelch_3: Galactose ox 98.7 2.4E-08 5.1E-13 76.3 6.1 49 45-108 1-49 (49)
67 PRK09453 phosphodiesterase; Pr 98.7 5.8E-08 1.3E-12 96.4 9.5 67 582-658 2-76 (182)
68 PF13415 Kelch_3: Galactose ox 98.6 6.1E-08 1.3E-12 74.0 6.2 48 109-161 1-49 (49)
69 PF00149 Metallophos: Calcineu 98.6 1.2E-07 2.6E-12 91.4 7.9 77 582-664 2-84 (200)
70 PF07646 Kelch_2: Kelch motif; 98.6 1.6E-07 3.6E-12 71.6 6.4 48 29-93 1-48 (49)
71 cd00841 MPP_YfcE Escherichia c 98.5 3E-07 6.4E-12 88.7 9.4 86 582-714 1-89 (155)
72 PF03089 RAG2: Recombination a 98.5 1.1E-05 2.3E-10 81.8 20.4 183 111-302 40-260 (337)
73 PF07646 Kelch_2: Kelch motif; 98.5 1.8E-07 4E-12 71.3 6.2 48 258-306 1-48 (49)
74 PF13418 Kelch_4: Galactose ox 98.5 2E-07 4.3E-12 71.1 4.3 47 99-150 1-48 (49)
75 PF13854 Kelch_5: Kelch motif 98.4 4.7E-07 1E-11 66.6 5.3 40 96-135 1-41 (42)
76 cd07397 MPP_DevT Myxococcus xa 98.4 8.3E-07 1.8E-11 90.6 8.7 113 582-713 2-160 (238)
77 PF13854 Kelch_5: Kelch motif 98.4 5.4E-07 1.2E-11 66.3 5.0 39 325-363 2-42 (42)
78 PF01344 Kelch_1: Kelch motif; 98.4 4E-07 8.6E-12 68.7 4.3 44 99-144 1-44 (47)
79 PF13418 Kelch_4: Galactose ox 98.4 3.6E-07 7.7E-12 69.7 4.0 46 152-199 1-47 (49)
80 TIGR00040 yfcE phosphoesterase 98.4 1.5E-06 3.2E-11 84.2 9.3 61 582-657 2-63 (158)
81 PF01344 Kelch_1: Kelch motif; 98.4 5.7E-07 1.2E-11 67.9 5.0 46 258-306 1-46 (47)
82 PF12850 Metallophos_2: Calcin 98.2 3.2E-06 7E-11 81.2 8.5 60 582-659 2-61 (156)
83 cd07388 MPP_Tt1561 Thermus the 98.1 6.7E-06 1.4E-10 83.8 7.9 70 582-658 6-75 (224)
84 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.00013 2.8E-09 74.9 16.4 154 128-308 48-210 (243)
85 smart00612 Kelch Kelch domain. 98.0 7.9E-06 1.7E-10 61.2 4.5 47 47-110 1-47 (47)
86 cd07379 MPP_239FB Homo sapiens 98.0 1.5E-05 3.2E-10 75.0 6.4 60 583-658 2-63 (135)
87 cd00838 MPP_superfamily metall 97.9 3.9E-05 8.5E-10 70.4 8.2 67 584-656 1-69 (131)
88 cd07394 MPP_Vps29 Homo sapiens 97.9 6.4E-05 1.4E-09 74.2 9.3 57 583-657 2-64 (178)
89 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.0012 2.6E-08 67.9 18.3 163 74-259 45-213 (243)
90 PF03089 RAG2: Recombination a 97.8 0.0096 2.1E-07 60.9 23.6 183 26-229 19-232 (337)
91 smart00612 Kelch Kelch domain. 97.8 4.2E-05 9.1E-10 57.2 5.0 45 165-214 1-45 (47)
92 cd07392 MPP_PAE1087 Pyrobaculu 97.7 5.3E-05 1.1E-09 75.2 6.6 66 583-660 1-67 (188)
93 PRK11138 outer membrane biogen 97.5 0.073 1.6E-06 59.5 28.7 229 45-362 69-313 (394)
94 cd07404 MPP_MS158 Microscilla 97.5 9.7E-05 2.1E-09 72.0 4.0 67 583-658 1-68 (166)
95 PRK11340 phosphodiesterase Yae 97.4 0.00031 6.7E-09 74.3 7.7 69 582-658 51-125 (271)
96 PRK11138 outer membrane biogen 97.4 0.08 1.7E-06 59.2 26.4 217 75-362 130-354 (394)
97 cd07385 MPP_YkuE_C Bacillus su 97.3 0.00039 8.5E-09 71.1 6.4 70 582-659 3-77 (223)
98 cd07403 MPP_TTHA0053 Thermus t 97.2 0.00077 1.7E-08 62.8 6.8 57 584-657 1-57 (129)
99 TIGR01640 F_box_assoc_1 F-box 97.2 0.068 1.5E-06 54.9 22.1 203 75-298 14-230 (230)
100 cd07390 MPP_AQ1575 Aquifex aeo 97.2 0.0012 2.6E-08 64.5 8.6 40 616-660 45-84 (168)
101 PRK05340 UDP-2,3-diacylglucosa 97.2 0.00053 1.1E-08 71.3 6.3 69 582-658 2-83 (241)
102 PF13360 PQQ_2: PQQ-like domai 97.1 0.29 6.3E-06 50.0 25.4 216 75-363 3-232 (238)
103 TIGR03729 acc_ester putative p 97.1 0.0011 2.5E-08 68.7 7.1 68 582-658 1-74 (239)
104 cd07400 MPP_YydB Bacillus subt 97.0 0.0025 5.4E-08 60.3 7.8 41 616-657 38-80 (144)
105 TIGR01640 F_box_assoc_1 F-box 97.0 0.11 2.4E-06 53.4 20.7 187 11-224 17-215 (230)
106 PF13360 PQQ_2: PQQ-like domai 96.9 0.61 1.3E-05 47.6 28.1 184 74-301 45-237 (238)
107 cd07396 MPP_Nbla03831 Homo sap 96.8 0.0029 6.3E-08 66.8 7.8 72 582-659 2-87 (267)
108 TIGR03300 assembly_YfgL outer 96.8 0.55 1.2E-05 52.0 26.3 180 75-299 155-341 (377)
109 TIGR03300 assembly_YfgL outer 96.8 0.45 9.8E-06 52.7 25.3 183 75-302 115-305 (377)
110 TIGR01854 lipid_A_lpxH UDP-2,3 96.8 0.0023 5E-08 66.0 6.2 68 583-658 1-81 (231)
111 PRK04036 DNA polymerase II sma 96.8 0.0054 1.2E-07 70.5 9.6 120 581-710 244-388 (504)
112 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.7 0.0033 7.1E-08 65.8 7.0 70 583-658 1-86 (262)
113 cd07399 MPP_YvnB Bacillus subt 96.6 0.01 2.2E-07 60.5 9.8 68 583-657 3-81 (214)
114 cd00216 PQQ_DH Dehydrogenases 96.5 1.8 3.9E-05 49.9 28.4 203 74-302 174-432 (488)
115 cd07402 MPP_GpdQ Enterobacter 96.5 0.0083 1.8E-07 62.1 8.0 69 582-658 1-83 (240)
116 PHA02546 47 endonuclease subun 96.5 0.0058 1.3E-07 66.8 7.0 72 582-659 2-90 (340)
117 COG0622 Predicted phosphoester 96.4 0.0094 2E-07 58.2 7.6 63 582-658 3-65 (172)
118 KOG0376 Serine-threonine phosp 96.3 0.0016 3.6E-08 71.4 1.8 118 553-677 14-135 (476)
119 TIGR00619 sbcd exonuclease Sbc 96.3 0.0082 1.8E-07 62.8 6.9 71 582-658 2-88 (253)
120 TIGR00024 SbcD_rel_arch putati 96.3 0.012 2.7E-07 60.2 7.7 40 616-659 61-103 (225)
121 cd00840 MPP_Mre11_N Mre11 nucl 96.2 0.0093 2E-07 60.8 6.6 74 582-661 1-92 (223)
122 cd07386 MPP_DNA_pol_II_small_a 96.2 0.016 3.4E-07 60.3 8.3 73 584-659 2-95 (243)
123 cd08165 MPP_MPPE1 human MPPE1 96.2 0.0074 1.6E-07 58.2 5.3 44 616-659 41-90 (156)
124 PRK11148 cyclic 3',5'-adenosin 96.2 0.013 2.9E-07 62.0 7.8 70 582-658 16-98 (275)
125 COG0639 ApaH Diadenosine tetra 96.1 0.0032 6.9E-08 59.3 2.0 84 659-746 2-92 (155)
126 PRK10966 exonuclease subunit S 96.0 0.016 3.5E-07 64.8 7.7 42 616-658 42-87 (407)
127 cd07391 MPP_PF1019 Pyrococcus 95.9 0.016 3.4E-07 56.9 6.3 43 616-658 44-88 (172)
128 cd07393 MPP_DR1119 Deinococcus 95.9 0.019 4.1E-07 59.3 7.0 38 616-657 44-83 (232)
129 cd07383 MPP_Dcr2 Saccharomyces 95.9 0.025 5.5E-07 56.8 7.8 41 616-656 44-87 (199)
130 PF12768 Rax2: Cortical protei 95.6 0.72 1.6E-05 48.8 17.3 111 74-198 15-130 (281)
131 cd00216 PQQ_DH Dehydrogenases 95.5 4.1 8.9E-05 47.0 25.3 167 75-251 71-273 (488)
132 COG2908 Uncharacterized protei 95.4 0.066 1.4E-06 54.2 8.6 98 585-710 2-115 (237)
133 cd07398 MPP_YbbF-LpxH Escheric 95.4 0.027 5.8E-07 57.2 5.9 42 616-658 33-82 (217)
134 TIGR00583 mre11 DNA repair pro 95.4 0.042 9.1E-07 61.1 7.8 72 582-659 5-124 (405)
135 cd07401 MPP_TMEM62_N Homo sapi 95.3 0.039 8.5E-07 57.8 7.0 70 583-658 2-89 (256)
136 COG1409 Icc Predicted phosphoh 94.9 0.088 1.9E-06 55.9 8.3 73 582-662 2-82 (301)
137 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.7 8.7 0.00019 44.7 24.8 114 75-198 79-200 (527)
138 cd07380 MPP_CWF19_N Schizosacc 94.7 0.068 1.5E-06 51.0 6.2 68 584-656 1-68 (150)
139 cd07395 MPP_CSTP1 Homo sapiens 94.7 0.094 2E-06 55.1 8.0 71 583-658 7-99 (262)
140 cd08164 MPP_Ted1 Saccharomyces 94.7 0.09 1.9E-06 52.2 7.1 66 588-658 24-111 (193)
141 cd07384 MPP_Cdc1_like Saccharo 94.6 0.071 1.5E-06 52.2 6.1 44 616-659 48-101 (171)
142 cd00839 MPP_PAPs purple acid p 94.5 0.045 9.8E-07 58.5 5.1 68 582-659 6-82 (294)
143 cd08166 MPP_Cdc1_like_1 unchar 94.5 0.041 8.9E-07 54.7 4.3 58 616-675 45-108 (195)
144 COG1408 Predicted phosphohydro 94.0 0.12 2.5E-06 54.9 6.7 71 582-660 46-120 (284)
145 PF07893 DUF1668: Protein of u 94.0 1.4 3.1E-05 48.2 15.3 123 162-306 75-217 (342)
146 PF07893 DUF1668: Protein of u 93.5 2.2 4.7E-05 46.8 15.8 121 45-198 76-216 (342)
147 cd00845 MPP_UshA_N_like Escher 93.5 0.14 3.1E-06 53.3 6.3 65 583-657 3-81 (252)
148 COG4186 Predicted phosphoester 93.0 0.4 8.8E-06 45.1 7.5 40 616-659 48-87 (186)
149 PF14582 Metallophos_3: Metall 92.9 0.14 2.9E-06 51.4 4.6 73 581-659 6-103 (255)
150 COG2129 Predicted phosphoester 92.6 0.39 8.4E-06 48.3 7.4 72 582-660 5-79 (226)
151 cd08163 MPP_Cdc1 Saccharomyces 92.4 0.44 9.5E-06 49.9 8.0 42 616-657 48-96 (257)
152 COG1520 FOG: WD40-like repeat 91.9 23 0.00051 39.0 26.4 195 74-305 77-279 (370)
153 PF12768 Rax2: Cortical protei 90.6 3.8 8.1E-05 43.4 12.6 126 112-253 1-130 (281)
154 PLN02533 probable purple acid 90.0 0.47 1E-05 53.5 5.7 69 582-659 141-212 (427)
155 cd07410 MPP_CpdB_N Escherichia 90.0 0.48 1.1E-05 50.2 5.5 63 583-657 3-94 (277)
156 PF06874 FBPase_2: Firmicute f 89.6 0.37 7.9E-06 55.3 4.3 41 616-661 187-227 (640)
157 COG1407 Predicted ICC-like pho 89.3 1.5 3.2E-05 44.8 8.1 70 580-659 19-111 (235)
158 KOG0918 Selenium-binding prote 87.7 0.042 9.2E-07 58.8 -4.3 103 614-722 48-150 (476)
159 COG0420 SbcD DNA repair exonuc 87.4 1.5 3.3E-05 48.9 7.5 44 616-659 43-89 (390)
160 PF14583 Pectate_lyase22: Olig 86.7 19 0.0004 39.8 14.9 225 74-347 59-303 (386)
161 TIGR03866 PQQ_ABC_repeats PQQ- 84.7 52 0.0011 34.0 22.4 121 75-225 11-134 (300)
162 cd07408 MPP_SA0022_N Staphyloc 84.5 1.8 4E-05 45.2 6.0 64 583-657 3-81 (257)
163 cd07412 MPP_YhcR_N Bacillus su 83.7 1.6 3.6E-05 46.5 5.2 65 583-657 3-87 (288)
164 cd07378 MPP_ACP5 Homo sapiens 83.6 2.2 4.8E-05 45.0 6.2 68 583-658 3-83 (277)
165 KOG3662 Cell division control 82.7 2.5 5.3E-05 46.7 6.1 42 616-657 96-143 (410)
166 cd07411 MPP_SoxB_N Thermus the 82.0 2.8 6.1E-05 44.0 6.2 35 617-657 55-94 (264)
167 KOG2055 WD40 repeat protein [G 81.9 43 0.00094 37.2 14.9 153 45-243 224-376 (514)
168 PF08268 FBA_3: F-box associat 81.8 29 0.00063 31.9 12.3 86 106-198 2-89 (129)
169 PLN00033 photosystem II stabil 81.1 99 0.0022 34.6 21.7 94 84-196 119-214 (398)
170 KOG3325 Membrane coat complex 80.6 8 0.00017 36.2 7.6 104 583-729 3-108 (183)
171 PF08321 PPP5: PPP5 TPR repeat 80.2 6.4 0.00014 34.4 6.7 42 528-579 54-95 (95)
172 PRK13684 Ycf48-like protein; P 79.1 1E+02 0.0022 33.5 24.3 174 85-305 119-297 (334)
173 PRK04792 tolB translocation pr 78.8 1.2E+02 0.0027 34.4 20.5 142 75-243 242-384 (448)
174 PF08450 SGL: SMP-30/Gluconola 78.6 83 0.0018 32.2 24.3 191 74-305 21-222 (246)
175 cd00094 HX Hemopexin-like repe 77.7 78 0.0017 31.4 16.9 107 110-243 63-177 (194)
176 COG1311 HYS2 Archaeal DNA poly 77.7 8.2 0.00018 43.3 8.1 79 582-662 227-325 (481)
177 KOG2055 WD40 repeat protein [G 77.0 31 0.00068 38.3 12.0 96 75-189 280-376 (514)
178 PF10282 Lactonase: Lactonase, 76.4 1.2E+02 0.0026 33.0 17.4 238 76-361 16-275 (345)
179 PRK05137 tolB translocation pr 75.7 1.5E+02 0.0032 33.5 26.2 194 74-304 181-374 (435)
180 TIGR03075 PQQ_enz_alc_DH PQQ-d 75.0 1.5E+02 0.0033 34.6 18.1 132 104-252 64-201 (527)
181 cd07409 MPP_CD73_N CD73 ecto-5 73.6 7.8 0.00017 41.1 6.6 65 583-657 3-93 (281)
182 COG1520 FOG: WD40-like repeat 73.2 1.5E+02 0.0033 32.6 20.1 154 74-240 162-319 (370)
183 PRK09419 bifunctional 2',3'-cy 72.5 5.5 0.00012 51.1 5.9 64 583-657 663-735 (1163)
184 TIGR03074 PQQ_membr_DH membran 72.2 2.4E+02 0.0052 34.5 26.3 70 126-196 270-353 (764)
185 COG3855 Fbp Uncharacterized pr 72.1 4.2 9.1E-05 44.8 4.0 40 616-660 193-232 (648)
186 PF08268 FBA_3: F-box associat 72.1 75 0.0016 29.1 12.1 70 74-145 19-89 (129)
187 TIGR02800 propeller_TolB tol-p 72.0 1.7E+02 0.0036 32.5 22.6 148 126-305 214-363 (417)
188 cd00842 MPP_ASMase acid sphing 71.8 7.4 0.00016 41.5 6.0 45 616-660 71-124 (296)
189 PF14870 PSII_BNR: Photosynthe 71.6 1.5E+02 0.0032 31.8 24.8 179 83-306 89-271 (302)
190 cd00094 HX Hemopexin-like repe 71.5 1.1E+02 0.0024 30.3 17.5 152 104-299 11-178 (194)
191 TIGR02800 propeller_TolB tol-p 71.1 1.7E+02 0.0038 32.4 22.0 141 75-242 214-355 (417)
192 TIGR03866 PQQ_ABC_repeats PQQ- 69.1 1.4E+02 0.0031 30.6 21.4 93 75-189 53-147 (300)
193 PRK05137 tolB translocation pr 69.0 2E+02 0.0044 32.4 22.3 194 75-304 226-420 (435)
194 KOG0310 Conserved WD40 repeat- 69.0 2E+02 0.0044 32.3 17.4 107 45-189 79-186 (487)
195 PRK04792 tolB translocation pr 68.9 2.1E+02 0.0046 32.5 23.1 148 126-305 242-391 (448)
196 COG1768 Predicted phosphohydro 68.8 9.5 0.00021 37.0 5.1 70 579-659 15-87 (230)
197 COG4880 Secreted protein conta 67.2 99 0.0021 34.3 12.8 193 73-306 404-600 (603)
198 PF08450 SGL: SMP-30/Gluconola 66.9 1.5E+02 0.0034 30.2 15.5 146 77-241 62-213 (246)
199 cd07406 MPP_CG11883_N Drosophi 65.4 13 0.00028 38.8 6.1 57 591-657 21-82 (257)
200 PRK13684 Ycf48-like protein; P 64.2 2.2E+02 0.0047 31.0 21.2 168 75-276 152-321 (334)
201 PLN00033 photosystem II stabil 64.0 2.5E+02 0.0054 31.5 24.4 91 192-306 271-366 (398)
202 KOG0649 WD40 repeat protein [G 63.4 1.9E+02 0.004 29.9 13.4 158 85-275 99-263 (325)
203 PF05096 Glu_cyclase_2: Glutam 63.2 55 0.0012 34.3 9.9 159 45-252 55-214 (264)
204 PF04042 DNA_pol_E_B: DNA poly 62.0 12 0.00025 37.7 4.8 72 583-660 1-93 (209)
205 KOG2476 Uncharacterized conser 61.5 20 0.00043 39.9 6.5 71 580-655 5-75 (528)
206 cd00200 WD40 WD40 domain, foun 61.0 1.8E+02 0.0039 28.9 22.4 94 75-189 73-167 (289)
207 PF14870 PSII_BNR: Photosynthe 60.7 2.4E+02 0.0052 30.3 19.9 243 17-348 5-254 (302)
208 PRK03629 tolB translocation pr 60.1 2.9E+02 0.0064 31.1 23.7 149 126-305 223-372 (429)
209 PF09910 DUF2139: Uncharacteri 59.9 2.4E+02 0.0052 30.0 19.2 102 73-193 76-185 (339)
210 TIGR00282 metallophosphoestera 59.0 19 0.0004 37.9 5.7 65 582-657 2-70 (266)
211 PRK04922 tolB translocation pr 57.2 3.3E+02 0.0071 30.7 23.4 147 125-304 227-376 (433)
212 PF02897 Peptidase_S9_N: Proly 57.0 3.1E+02 0.0068 30.4 16.8 202 75-303 150-365 (414)
213 PRK11028 6-phosphogluconolacto 57.0 2.7E+02 0.0059 29.7 24.0 97 75-188 57-157 (330)
214 KOG1432 Predicted DNA repair e 55.9 28 0.00061 37.4 6.3 43 616-658 103-147 (379)
215 COG0737 UshA 5'-nucleotidase/2 55.5 16 0.00035 42.4 5.1 65 582-657 28-114 (517)
216 PRK00178 tolB translocation pr 55.4 3.4E+02 0.0074 30.4 22.7 186 75-299 223-409 (430)
217 KOG0649 WD40 repeat protein [G 55.1 2.6E+02 0.0056 28.9 14.8 140 139-306 100-245 (325)
218 PRK00178 tolB translocation pr 54.7 3.5E+02 0.0076 30.3 21.7 147 126-305 223-372 (430)
219 cd07405 MPP_UshA_N Escherichia 54.5 18 0.00039 38.4 4.9 68 583-657 3-86 (285)
220 cd07407 MPP_YHR202W_N Saccharo 53.7 19 0.00042 38.2 4.9 37 617-658 54-97 (282)
221 cd07382 MPP_DR1281 Deinococcus 53.5 29 0.00064 36.2 6.1 65 582-657 1-69 (255)
222 cd00200 WD40 WD40 domain, foun 52.9 2.4E+02 0.0052 27.9 22.4 94 75-189 31-125 (289)
223 PRK04922 tolB translocation pr 52.4 3.9E+02 0.0084 30.1 22.3 191 75-303 228-418 (433)
224 PF12217 End_beta_propel: Cata 52.3 2.9E+02 0.0063 28.8 12.5 114 45-173 200-334 (367)
225 PF10282 Lactonase: Lactonase, 51.1 1.8E+02 0.0039 31.7 12.2 175 103-305 147-333 (345)
226 KOG0310 Conserved WD40 repeat- 50.2 3.8E+02 0.0082 30.3 13.9 128 45-226 165-300 (487)
227 PTZ00235 DNA polymerase epsilo 49.2 56 0.0012 34.6 7.3 76 581-658 28-122 (291)
228 PRK04043 tolB translocation pr 49.2 4.3E+02 0.0094 29.7 23.7 154 126-306 213-367 (419)
229 PRK02889 tolB translocation pr 49.1 4.3E+02 0.0093 29.7 23.0 147 126-304 220-368 (427)
230 PRK04043 tolB translocation pr 49.0 4.4E+02 0.0094 29.7 20.8 192 75-305 213-409 (419)
231 cd08162 MPP_PhoA_N Synechococc 49.0 31 0.00067 37.3 5.6 69 583-657 3-90 (313)
232 COG0634 Hpt Hypoxanthine-guani 48.8 94 0.002 30.3 8.1 85 551-639 9-118 (178)
233 PRK11028 6-phosphogluconolacto 46.6 3.9E+02 0.0085 28.5 24.5 142 75-243 12-158 (330)
234 PRK09420 cpdB bifunctional 2', 42.4 40 0.00088 40.3 5.7 66 582-657 27-121 (649)
235 KOG1378 Purple acid phosphatas 41.1 40 0.00086 37.9 5.0 73 581-661 148-224 (452)
236 TIGR01390 CycNucDiestase 2',3' 40.7 43 0.00093 39.9 5.6 65 583-657 5-98 (626)
237 KOG2863 RNA lariat debranching 40.3 31 0.00067 37.2 3.8 72 582-659 2-89 (456)
238 PRK09419 bifunctional 2',3'-cy 39.3 40 0.00087 43.4 5.4 64 583-657 44-138 (1163)
239 PRK03629 tolB translocation pr 39.3 6E+02 0.013 28.6 20.2 192 75-304 223-414 (429)
240 PTZ00422 glideosome-associated 35.7 42 0.00092 37.3 4.1 41 617-657 61-108 (394)
241 PF05096 Glu_cyclase_2: Glutam 34.5 1E+02 0.0023 32.2 6.5 87 12-135 72-158 (264)
242 PF13088 BNR_2: BNR repeat-lik 34.3 2.9E+02 0.0064 28.5 10.3 136 76-221 135-275 (275)
243 PF13088 BNR_2: BNR repeat-lik 33.7 5.5E+02 0.012 26.4 18.1 210 85-308 30-254 (275)
244 TIGR01530 nadN NAD pyrophospha 33.2 84 0.0018 36.9 6.4 37 616-657 52-93 (550)
245 PF05567 Neisseria_PilC: Neiss 32.7 6.8E+02 0.015 27.2 13.5 77 112-194 163-247 (335)
246 PRK01742 tolB translocation pr 32.2 7.6E+02 0.017 27.7 23.0 141 126-304 228-369 (429)
247 KOG2321 WD40 repeat protein [G 31.7 4.1E+02 0.0089 30.8 10.8 99 74-189 154-260 (703)
248 PLN00181 protein SPA1-RELATED; 30.6 1.1E+03 0.024 28.9 20.4 22 163-189 587-608 (793)
249 KOG2321 WD40 repeat protein [G 30.2 4.2E+02 0.0092 30.7 10.6 67 149-227 130-197 (703)
250 KOG2679 Purple (tartrate-resis 29.4 44 0.00095 34.8 2.7 69 582-658 45-126 (336)
251 KOG0316 Conserved WD40 repeat- 29.4 6.5E+02 0.014 26.0 15.3 175 75-299 81-260 (307)
252 PRK11907 bifunctional 2',3'-cy 29.3 88 0.0019 38.4 5.8 65 583-657 118-212 (814)
253 PF02191 OLF: Olfactomedin-lik 29.2 6.7E+02 0.015 26.1 16.5 137 73-222 87-236 (250)
254 KOG3339 Predicted glycosyltran 29.2 2.5E+02 0.0054 27.8 7.5 89 615-708 40-140 (211)
255 PF15525 DUF4652: Domain of un 28.9 2.8E+02 0.0062 27.4 8.0 66 74-143 87-155 (200)
256 TIGR02658 TTQ_MADH_Hv methylam 28.3 8.3E+02 0.018 26.9 14.0 137 71-223 23-165 (352)
257 KOG0308 Conserved WD40 repeat- 28.2 7.9E+02 0.017 29.1 12.4 66 45-136 129-203 (735)
258 PF03178 CPSF_A: CPSF A subuni 28.1 5E+02 0.011 27.7 11.0 121 75-222 62-189 (321)
259 TIGR00282 metallophosphoestera 27.2 70 0.0015 33.6 3.9 39 616-658 2-41 (266)
260 KOG0308 Conserved WD40 repeat- 27.1 8.5E+02 0.018 28.8 12.4 121 109-252 129-265 (735)
261 PF02191 OLF: Olfactomedin-lik 27.1 7.3E+02 0.016 25.8 17.6 158 97-274 66-236 (250)
262 PF12641 Flavodoxin_3: Flavodo 26.1 2.3E+02 0.005 27.3 7.0 64 584-650 2-72 (160)
263 COG4946 Uncharacterized protei 25.4 1E+03 0.023 27.1 15.2 192 73-306 105-305 (668)
264 PRK09558 ushA bifunctional UDP 24.9 95 0.0021 36.4 4.9 69 583-657 37-120 (551)
265 cd07387 MPP_PolD2_C PolD2 (DNA 24.7 2.1E+02 0.0045 30.0 6.8 48 616-663 45-112 (257)
266 PF13258 DUF4049: Domain of un 24.5 4.2E+02 0.0091 27.2 8.4 60 645-713 127-187 (318)
267 PTZ00421 coronin; Provisional 24.5 1.1E+03 0.024 27.1 19.9 62 111-189 139-200 (493)
268 KOG0646 WD40 repeat protein [G 23.9 4.2E+02 0.009 29.9 9.0 155 156-356 85-247 (476)
269 PF06433 Me-amine-dh_H: Methyl 23.5 5.8E+02 0.012 27.9 10.0 54 74-136 66-128 (342)
270 KOG3947 Phosphoesterases [Gene 23.2 1.1E+02 0.0024 32.1 4.3 63 582-660 63-128 (305)
271 PF02875 Mur_ligase_C: Mur lig 22.7 2E+02 0.0043 24.4 5.3 71 581-655 12-82 (91)
272 PF13570 PQQ_3: PQQ-like domai 22.6 2.1E+02 0.0046 20.0 4.6 27 261-297 14-40 (40)
273 KOG4649 PQQ (pyrrolo-quinoline 21.7 9.5E+02 0.021 25.3 12.4 130 45-221 21-152 (354)
274 KOG2048 WD40 repeat protein [G 20.7 9.2E+02 0.02 28.6 11.2 138 12-189 411-550 (691)
275 TIGR03074 PQQ_membr_DH membran 20.7 1.6E+03 0.035 27.5 17.3 32 160-198 192-223 (764)
276 KOG1523 Actin-related protein 20.4 4.1E+02 0.0088 28.6 7.8 134 74-228 31-169 (361)
277 PRK02889 tolB translocation pr 20.4 1.2E+03 0.026 26.0 21.8 184 75-298 220-405 (427)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-57 Score=433.49 Aligned_cols=218 Identities=40% Similarity=0.671 Sum_probs=206.7
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 004198 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (769)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~~ 610 (769)
+++.|+.|.+.+ ++++.+|..||.++.+||.+|++|+.+.+||+|||||||||+||+.+|+..|.++..
T Consensus 3 ldr~ie~L~~~~----------li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t- 71 (303)
T KOG0372|consen 3 LDRQIEQLRRCE----------LIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPET- 71 (303)
T ss_pred HHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCC-
Confidence 467888888763 689999999999999999999999999999999999999999999999999988876
Q ss_pred CCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhh
Q 004198 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (769)
Q Consensus 611 ~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f 690 (769)
+|+|||||||||.+|+|++.||++||++||++|+|||||||.+.++..|||++||.+||+.. .+|+.+.++|
T Consensus 72 -----~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~---~vWr~c~eiF 143 (303)
T KOG0372|consen 72 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSA---NVWRYCTEIF 143 (303)
T ss_pred -----ceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCCh---HHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999854 7999999999
Q ss_pred ccccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCCCCC-cccccCcceEEeehhhhhhhc
Q 004198 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNIS-TILRSMVLYIILFSLKIFISF 768 (769)
Q Consensus 691 ~~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~~-~~~~~~~~~~~~~~~~~~~~~ 768 (769)
++||++|+|+++|||||||++|++.+++||+.+.|..++|.++ .++|||||||++. .+--+..+-++.||.++.-+|
T Consensus 144 dyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g-~m~DllWSDPee~~g~~~SPRGaGylFG~dvv~~F 221 (303)
T KOG0372|consen 144 DYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDG-AMCDLLWSDPEEGPGWGLSPRGAGYLFGEDVVESF 221 (303)
T ss_pred HhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCC-cchheeccCcccCCCcccCCCCccccccHHHHHHH
Confidence 9999999999999999999999999999999999999999888 8999999999876 777788888999999998877
No 2
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-52 Score=391.62 Aligned_cols=217 Identities=38% Similarity=0.664 Sum_probs=202.6
Q ss_pred HHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCCCC
Q 004198 532 KKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGD 611 (769)
Q Consensus 532 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~ 611 (769)
++-|+..-+.+ .|+++|+..||+.++++|+.|.+++.+..||.|+|||||||+||+++|+..|-.|+.
T Consensus 7 d~wi~~vk~ck----------yLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~t-- 74 (306)
T KOG0373|consen 7 DQWIETVKKCK----------YLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDT-- 74 (306)
T ss_pred HHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCc--
Confidence 45566655553 589999999999999999999999999999999999999999999999998876655
Q ss_pred CcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhhc
Q 004198 612 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFN 691 (769)
Q Consensus 612 ~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~ 691 (769)
+|+|+|||||||.+|+|++.+|+.||.+||.+|.+||||||.+.+...|||++||..|||.. ..|+.+.++|+
T Consensus 75 ----nYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGna---n~wkycckVFD 147 (306)
T KOG0373|consen 75 ----NYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNA---NVWKYCCKVFD 147 (306)
T ss_pred ----ceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCc---hHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999875 79999999999
Q ss_pred cccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCCCC-CcccccCcceEEeehhhhhhhc
Q 004198 692 CLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNI-STILRSMVLYIILFSLKIFISF 768 (769)
Q Consensus 692 ~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~-~~~~~~~~~~~~~~~~~~~~~~ 768 (769)
.|+++|+|+++++|||||++|++.++|||+.|.|..++|.++ .+|||+||||++ +.+--+..+-+++||.++--+|
T Consensus 148 ~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G-~fcDlmWSDPedve~W~vSpRGAGwlFGskVt~eF 224 (306)
T KOG0373|consen 148 FLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEG-PFCDLMWSDPEDVETWAVSPRGAGWLFGSKVTTEF 224 (306)
T ss_pred hhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCC-CccceeccChhhhhhheeCCCCcceeechhhhHHH
Confidence 999999999999999999999999999999999999999988 789999999975 5777888999999999988777
No 3
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.7e-49 Score=414.71 Aligned_cols=229 Identities=49% Similarity=0.839 Sum_probs=205.3
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhC-CCCCC
Q 004198 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYG-FPSTA 609 (769)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~-~~~~~ 609 (769)
++++|..++..............++++||.+||..+.++|.++|+++++.+||+|||||||||.||+++|...| +|++.
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~ 88 (331)
T KOG0374|consen 9 LDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQ 88 (331)
T ss_pred HHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcc
Confidence 46677777766543333333445899999999999999999999999999999999999999999999999999 88877
Q ss_pred CCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHh
Q 004198 610 GDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQL 689 (769)
Q Consensus 610 ~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~ 689 (769)
+|||||||||||++|+|++.||+++|++||++|++||||||.+.+|..|||++||.+||+. ..+|+.|+++
T Consensus 89 ------~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~---~~~w~~F~~~ 159 (331)
T KOG0374|consen 89 ------NYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGE---IKLWKAFNDA 159 (331)
T ss_pred ------cEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcch---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999964 5799999999
Q ss_pred hccccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCCCCC--cccccCcceEEeehhhhhhh
Q 004198 690 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNIS--TILRSMVLYIILFSLKIFIS 767 (769)
Q Consensus 690 f~~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~~--~~~~~~~~~~~~~~~~~~~~ 767 (769)
|++||++|+|+++|+|+|||++|.+.++++|+.|.||.+.++.+ +++|||||||+.. .+-.+..+-.++||.+++..
T Consensus 160 f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~g-ll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~~v~~ 238 (331)
T KOG0374|consen 160 FNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKG-LLCDLLWSDPDDDVPGWEENDRGVSFTFGPAVVED 238 (331)
T ss_pred HhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccc-eeeeeeecCCCCCCCCcccCCCceeeEecHHHHHH
Confidence 99999999999999999999999999999999999998888777 9999999999875 44445555667899998887
Q ss_pred cC
Q 004198 768 FI 769 (769)
Q Consensus 768 ~~ 769 (769)
|+
T Consensus 239 f~ 240 (331)
T KOG0374|consen 239 FC 240 (331)
T ss_pred HH
Confidence 63
No 4
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=7.7e-46 Score=391.11 Aligned_cols=222 Identities=28% Similarity=0.495 Sum_probs=193.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecC----CEEEEccCCCCHHHHHHHHHHhCCC
Q 004198 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGFP 606 (769)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~----~i~viGDiHG~~~~l~~~l~~~~~~ 606 (769)
++++|+.+++.. .|+.+++.+||++|+++|++||+|+++.. |++||||||||+.+|+++|+..|++
T Consensus 7 ~~~~i~~~~~~~----------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~ 76 (321)
T cd07420 7 IDALIEAFKEKQ----------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLP 76 (321)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCC
Confidence 678889988743 47889999999999999999999999976 8999999999999999999999988
Q ss_pred CCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHH
Q 004198 607 STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRF 686 (769)
Q Consensus 607 ~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~ 686 (769)
+... +|||||||||||++|+||+.+|++||++||+++++||||||.+.++..|||.+||..+|+.. ...+|+.+
T Consensus 77 ~~~~-----~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~-~~~l~~~~ 150 (321)
T cd07420 77 SPEN-----PYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLH-GKKILRLL 150 (321)
T ss_pred Cccc-----eEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCcc-HHHHHHHH
Confidence 6432 79999999999999999999999999999999999999999999999999999999999753 56799999
Q ss_pred hHhhccccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcc-----cCC---------------------Cccceecee
Q 004198 687 NQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPIT-----MDA---------------------GSIILMDLL 740 (769)
Q Consensus 687 ~~~f~~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~-----~~~---------------------~~~~~~dll 740 (769)
+++|++||+||++++++|||||||++ ..++++|+.++|+.. .+. +..+++|+|
T Consensus 151 ~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlL 229 (321)
T cd07420 151 EDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDIL 229 (321)
T ss_pred HHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhheee
Confidence 99999999999999999999999997 578999999988421 111 013678999
Q ss_pred ccCCCCCcc--cccCcceEEeehhhhhhhcC
Q 004198 741 WFVLNISTI--LRSMVLYIILFSLKIFISFI 769 (769)
Q Consensus 741 Wsdp~~~~~--~~~~~~~~~~~~~~~~~~~~ 769 (769)
||||..... -.+.++.+..||.+...+|+
T Consensus 230 WSDP~~~~~~~~~~~RG~g~~FG~~~~~~Fl 260 (321)
T cd07420 230 WSDPKAQKGCKPNTFRGGGCYFGPDVTSKVL 260 (321)
T ss_pred ecCCccCCCCCccCCCCCccccCHHHHHHHH
Confidence 999986432 22346777899999988773
No 5
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=5.5e-47 Score=382.14 Aligned_cols=183 Identities=39% Similarity=0.712 Sum_probs=175.9
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHH
Q 004198 553 FLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLE 632 (769)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e 632 (769)
.|+++...+|+.++..+|++|++++++++||.|||||||||.||+++|+..|.|... +|+|||||||||.+|+|
T Consensus 60 rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t------~YLFLGDYVDRGyFSiE 133 (517)
T KOG0375|consen 60 RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 133 (517)
T ss_pred chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccc------eeEeeccccccceeeee
Confidence 378888999999999999999999999999999999999999999999999988765 99999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhhccccceEEEeceEEEEcCCCCC
Q 004198 633 TITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGR 712 (769)
Q Consensus 633 ~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i~~~i~~vHgGi~~ 712 (769)
|+.+|.+||+.||..+++||||||++.+...|.|+.||..||. +.+|..+++.|++|||||++++++||||||++|
T Consensus 134 CvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYs----e~vYdaCmesFd~LPLAAlmNqQflCVHGGlSP 209 (517)
T KOG0375|consen 134 CVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMESFDCLPLAALMNQQFLCVHGGLSP 209 (517)
T ss_pred hHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhcc----HHHHHHHHHHhccchHHHHhcCceEEecCCCCc
Confidence 9999999999999999999999999999999999999999995 469999999999999999999999999999999
Q ss_pred CCCChHHhhhccCCcccCCCccceeceeccCCCC
Q 004198 713 SIHSVEQIEKLERPITMDAGSIILMDLLWFVLNI 746 (769)
Q Consensus 713 ~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~ 746 (769)
.+.++++|+++.|..++|.-+ .+||||||||.+
T Consensus 210 Ei~tl~DIr~l~RF~EpPa~G-pmCDLLWsDPlE 242 (517)
T KOG0375|consen 210 EIHTLDDIRKLDRFKEPPAFG-PMCDLLWSDPLE 242 (517)
T ss_pred ccccHHHHHhhhhccCCCccC-cchhhhccChhh
Confidence 999999999999999999877 899999999964
No 6
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=1.4e-45 Score=388.36 Aligned_cols=226 Identities=46% Similarity=0.813 Sum_probs=205.8
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 004198 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (769)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~~ 610 (769)
++++|+.+++.+.+++. ....|+++++.+||++|.++|++||+++++.+|+.||||||||+.+|.++|+..++++..
T Consensus 11 ~~~~i~~~~~~~~~~~~--~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~- 87 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPG--KNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPES- 87 (320)
T ss_pred HHHHHHHHHhccccCcc--ccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcc-
Confidence 67889999987655532 233689999999999999999999999999999999999999999999999999998766
Q ss_pred CCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhh
Q 004198 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (769)
Q Consensus 611 ~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f 690 (769)
+|||||||||||++++||+.+|+++|+.+|.++++||||||...++..|||..||..+|+ ..+|..++++|
T Consensus 88 -----~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~----~~l~~~~~~~F 158 (320)
T PTZ00480 88 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT----IKLWKTFTDCF 158 (320)
T ss_pred -----eEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999994 47999999999
Q ss_pred ccccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCCCCC--cccccCcceEEeehhhhhhhc
Q 004198 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNIS--TILRSMVLYIILFSLKIFISF 768 (769)
Q Consensus 691 ~~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~~--~~~~~~~~~~~~~~~~~~~~~ 768 (769)
++||+||+|++++|||||||+|.+.++++|+.++||.+++..+ +++|+|||||... .+-.+.++-+++||.+...+|
T Consensus 159 ~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~~~F 237 (320)
T PTZ00480 159 NCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTG-LLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVF 237 (320)
T ss_pred HhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccc-hhhheeecCcccccCCCccCCCCCccccCHHHHHHH
Confidence 9999999999999999999999999999999999999887665 8999999999753 455567777889999998877
Q ss_pred C
Q 004198 769 I 769 (769)
Q Consensus 769 ~ 769 (769)
+
T Consensus 238 l 238 (320)
T PTZ00480 238 L 238 (320)
T ss_pred H
Confidence 3
No 7
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=7.9e-45 Score=386.50 Aligned_cols=235 Identities=63% Similarity=1.066 Sum_probs=206.6
Q ss_pred HHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCC--CC
Q 004198 534 IISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTA--GD 611 (769)
Q Consensus 534 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~--~~ 611 (769)
+|+++|+|+.|+++.+.++.++++++.+||++|.+||++||+++++..|++||||||||+.+|.++|+.+++++.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 4789999999999888888999999999999999999999999999999999999999999999999999988641 22
Q ss_pred CcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCC--CchhhhHHHhHh
Q 004198 612 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGEN--DGIWAWTRFNQL 689 (769)
Q Consensus 612 ~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~--~~~~~~~~~~~~ 689 (769)
....+|||||||||||++|+|||.+|++||+.+|.++++||||||.+.++..+||..||..+|+.. .+..+|..++++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 222379999999999999999999999999999999999999999999999999999999999762 345799999999
Q ss_pred hccccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCCCCCcccc----cC---cceE--Eee
Q 004198 690 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNISTILR----SM---VLYI--ILF 760 (769)
Q Consensus 690 f~~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~~~~~~----~~---~~~~--~~~ 760 (769)
|++||++++++++++|||||++|.+.++++|+.+.||...+....+++|+|||||...+... +. .+.+ +.|
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~f 240 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeE
Confidence 99999999999999999999999999999999999998554444589999999998643221 11 4455 588
Q ss_pred hhhhhhhc
Q 004198 761 SLKIFISF 768 (769)
Q Consensus 761 ~~~~~~~~ 768 (769)
|.+..-.|
T Consensus 241 g~~~~~~F 248 (311)
T cd07419 241 GPDRVHRF 248 (311)
T ss_pred CHHHHHHH
Confidence 88887766
No 8
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-45 Score=356.78 Aligned_cols=218 Identities=39% Similarity=0.677 Sum_probs=195.8
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 004198 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (769)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~~ 610 (769)
++..|..|...+ .+++.++..||+.|+++|++|.+|..++.|++|+||+||||++|+++|+..|..++.
T Consensus 20 vd~~ie~L~~ck----------~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdt- 88 (319)
T KOG0371|consen 20 VDPWIEQLYKCK----------PLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDT- 88 (319)
T ss_pred cccchHHHHhcC----------CCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCc-
Confidence 456778877764 478889999999999999999999999999999999999999999999988877765
Q ss_pred CCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhh
Q 004198 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (769)
Q Consensus 611 ~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f 690 (769)
+|+|+|||||||++|.|++.+|.++|++||++|.+||||||.+.+...|||++||.+|||.. .+|+.|.+.|
T Consensus 89 -----nylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~a---nvw~~Ftdlf 160 (319)
T KOG0371|consen 89 -----NYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNA---NVWKYFTDLF 160 (319)
T ss_pred -----ceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccc---cchHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999865 7999999999
Q ss_pred ccccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCCCCC-cccccCcceEEeehhhhhhhc
Q 004198 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNIS-TILRSMVLYIILFSLKIFISF 768 (769)
Q Consensus 691 ~~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~~-~~~~~~~~~~~~~~~~~~~~~ 768 (769)
+++|++|+|+++|||.|||++|++.+++.++.++|-.++|.++ -+||||||||++. .+-.+..+-++.||.++--.|
T Consensus 161 dy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg-pmcDlLwsdpddr~gwg~sprgag~tfg~di~~~f 238 (319)
T KOG0371|consen 161 DYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG-PMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQF 238 (319)
T ss_pred hccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC-ChhheeccCcccCCCCCCCCCCCCcccchhhHHHh
Confidence 9999999999999999999999999999999999988898888 6789999999875 333344555566777764433
No 9
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=2.7e-44 Score=378.09 Aligned_cols=218 Identities=39% Similarity=0.703 Sum_probs=199.4
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 004198 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (769)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~~ 610 (769)
++++|+.+++.. .|+++++.+||++|++||++||+++++..|++||||||||+.+|.++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~- 71 (303)
T PTZ00239 3 IDRHIATLLNGG----------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNA- 71 (303)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 467788877642 478999999999999999999999999999999999999999999999999887665
Q ss_pred CCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhh
Q 004198 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (769)
Q Consensus 611 ~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f 690 (769)
+|||||||||||++++|++.+|+++|+.+|.++++||||||.+.++..|||.+|+..+|+.. .+|+.++++|
T Consensus 72 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~---~~~~~~~~~f 143 (303)
T PTZ00239 72 -----NYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNS---NPWRLFMDVF 143 (303)
T ss_pred -----eEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcCh---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999743 5899999999
Q ss_pred ccccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCCCC-CcccccCcceEEeehhhhhhhc
Q 004198 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNI-STILRSMVLYIILFSLKIFISF 768 (769)
Q Consensus 691 ~~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~-~~~~~~~~~~~~~~~~~~~~~~ 768 (769)
++||++|+++++++||||||+|.+.++++|+.++||.+++.++ +++|+|||||.+ +.+..+.++.+..||.+...+|
T Consensus 144 ~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~F 221 (303)
T PTZ00239 144 DCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEG-PFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEF 221 (303)
T ss_pred HhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCC-CceeeEecCccccCCCccCCCCCccccCHHHHHHH
Confidence 9999999999999999999999999999999999999988766 789999999974 3455667888889999988777
No 10
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.9e-44 Score=378.25 Aligned_cols=226 Identities=40% Similarity=0.746 Sum_probs=204.3
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCC
Q 004198 530 LHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTA 609 (769)
Q Consensus 530 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~ 609 (769)
+++++|.++++...+. ......++.+++.+||++|+++|++||+++++.+|++||||||||+.+|+++|+.+++++.+
T Consensus 3 ~~~~~i~~~~~~~~~~--~~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~~ 80 (294)
T PTZ00244 3 LVQTLIEKMLTVKGNR--TQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPYS 80 (294)
T ss_pred hHHHHHHHHHhcccCC--CccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCcc
Confidence 4578888888865332 22344789999999999999999999999999999999999999999999999999998765
Q ss_pred CCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHh
Q 004198 610 GDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQL 689 (769)
Q Consensus 610 ~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~ 689 (769)
+|||||||||||++|+||+.+++++|+.+|.++++||||||.+.++..|||.+|+..+|+ ..+|..++++
T Consensus 81 ------~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~ 150 (294)
T PTZ00244 81 ------NYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN----IKLFKAFTDV 150 (294)
T ss_pred ------cEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh----HHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999994 5699999999
Q ss_pred hccccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCCCC--CcccccCcceEEeehhhhhhh
Q 004198 690 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNI--STILRSMVLYIILFSLKIFIS 767 (769)
Q Consensus 690 f~~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~--~~~~~~~~~~~~~~~~~~~~~ 767 (769)
|++||++|+++++++|||||++|.+.++++|+.++||.+.+..+ +++|+|||||.. ..+..+.++.+..||.+...+
T Consensus 151 f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~ 229 (294)
T PTZ00244 151 FNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRG-ILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVND 229 (294)
T ss_pred HHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCccc-hhheeeecCcccccCCCCcCCCCCccccCHHHHHH
Confidence 99999999999999999999999999999999999999887665 899999999975 355566678888999998877
Q ss_pred c
Q 004198 768 F 768 (769)
Q Consensus 768 ~ 768 (769)
|
T Consensus 230 F 230 (294)
T PTZ00244 230 F 230 (294)
T ss_pred H
Confidence 7
No 11
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=1.8e-44 Score=379.29 Aligned_cols=226 Identities=45% Similarity=0.814 Sum_probs=203.5
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 004198 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (769)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~~ 610 (769)
++++|+.+++.+.++. .....++++++.+||++|+++|++||+++++..|++||||||||+.+|.++|+..++++.+
T Consensus 2 ~~~~i~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~- 78 (293)
T cd07414 2 IDSIIERLLEVRGSRP--GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPES- 78 (293)
T ss_pred HHHHHHHHHhccccCC--cccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcc-
Confidence 3667888887654443 2344689999999999999999999999999999999999999999999999999998766
Q ss_pred CCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhh
Q 004198 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (769)
Q Consensus 611 ~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f 690 (769)
+|||||||||||++++|++.+|+++|+.+|.++++||||||.+.++..+||.+||..+|+ ..+|..++++|
T Consensus 79 -----~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~f 149 (293)
T cd07414 79 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN----IKLWKTFTDCF 149 (293)
T ss_pred -----eEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999984 56999999999
Q ss_pred ccccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCCCCC--cccccCcceEEeehhhhhhhc
Q 004198 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNIS--TILRSMVLYIILFSLKIFISF 768 (769)
Q Consensus 691 ~~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~~--~~~~~~~~~~~~~~~~~~~~~ 768 (769)
++||++|+++++++|||||++|.+.++++|+.++||.+++..+ +++|+|||||... .+-.+.++.+..||.+...+|
T Consensus 150 ~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~F 228 (293)
T cd07414 150 NCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQG-LLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKF 228 (293)
T ss_pred HHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCchh-hHhhhhccCcccccCCCccCCCCcceecCHHHHHHH
Confidence 9999999999999999999999999999999999999887665 8999999999753 444456777889999988877
Q ss_pred C
Q 004198 769 I 769 (769)
Q Consensus 769 ~ 769 (769)
+
T Consensus 229 l 229 (293)
T cd07414 229 L 229 (293)
T ss_pred H
Confidence 3
No 12
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=3.1e-44 Score=375.98 Aligned_cols=219 Identities=41% Similarity=0.688 Sum_probs=200.0
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 004198 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (769)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~~ 610 (769)
++++|+.+++.. .|+.+++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..++++..
T Consensus 2 ~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~- 70 (285)
T cd07415 2 LDKWIEQLKKCE----------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDT- 70 (285)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCC-
Confidence 366788888642 478999999999999999999999999999999999999999999999999987765
Q ss_pred CCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhh
Q 004198 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (769)
Q Consensus 611 ~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f 690 (769)
+|||||||||||++|+||+.+|++||+.+|.++++||||||.+.++..|||.+||..+|+. ..+|..++++|
T Consensus 71 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~---~~l~~~~~~~f 142 (285)
T cd07415 71 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGN---ANVWKYCTDLF 142 (285)
T ss_pred -----eEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCc---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999964 36999999999
Q ss_pred ccccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCCCCC-cccccCcceEEeehhhhhhhcC
Q 004198 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNIS-TILRSMVLYIILFSLKIFISFI 769 (769)
Q Consensus 691 ~~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~~-~~~~~~~~~~~~~~~~~~~~~~ 769 (769)
++||++|+++++++||||||+|.+.++++|+.++||.+++.++ +++|+|||||... .+-.+.++.+..||.+...+|+
T Consensus 143 ~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl 221 (285)
T cd07415 143 DYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEG-PMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFN 221 (285)
T ss_pred HHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCC-CccceEecCCCccCCCCcCCCCCccccCHHHHHHHH
Confidence 9999999999999999999999999999999999999887665 7899999999865 3445667778899999988773
No 13
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=2.1e-43 Score=373.69 Aligned_cols=217 Identities=35% Similarity=0.634 Sum_probs=194.5
Q ss_pred HHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCCCC
Q 004198 532 KKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGD 611 (769)
Q Consensus 532 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~ 611 (769)
+-+++.+.+.. .|+++++.+||++|+++|++||+++++..|++||||||||+.+|.++|+..+.++.+
T Consensus 4 ~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~-- 71 (305)
T cd07416 4 DVLKAHFMREG----------RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANT-- 71 (305)
T ss_pred HHHHHHHHcCC----------CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc--
Confidence 34556666542 378899999999999999999999999999999999999999999999999988765
Q ss_pred CcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhhc
Q 004198 612 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFN 691 (769)
Q Consensus 612 ~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~ 691 (769)
+|||||||||||++|+||+.+|++||+.+|.++++||||||.+.++..+||..|+..+| +..+|..++++|+
T Consensus 72 ----~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y----~~~l~~~~~~~f~ 143 (305)
T cd07416 72 ----RYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY----SERVYDACMEAFD 143 (305)
T ss_pred ----eEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhc----cHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999888 4578999999999
Q ss_pred cccceEEEeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCCCCCcc-------c--ccCcceEEeehh
Q 004198 692 CLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNISTI-------L--RSMVLYIILFSL 762 (769)
Q Consensus 692 ~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~~~~-------~--~~~~~~~~~~~~ 762 (769)
+||++++++++++||||||+|.+.++++|++++||.+.+..+ +++|+|||||..... + .+.++.++.||.
T Consensus 144 ~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~fG~ 222 (305)
T cd07416 144 CLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFG-PMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSY 222 (305)
T ss_pred hccceeEEcCCEEEEcCCCCcccccHHHhcccCCCCCCCCCC-cceeeeecCcccccccccccccccccCCCCCceecCH
Confidence 999999999999999999999999999999999998877665 889999999975422 1 235677789999
Q ss_pred hhhhhcC
Q 004198 763 KIFISFI 769 (769)
Q Consensus 763 ~~~~~~~ 769 (769)
+...+|+
T Consensus 223 ~~~~~Fl 229 (305)
T cd07416 223 RAVCEFL 229 (305)
T ss_pred HHHHHHH
Confidence 9888773
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=4.7e-43 Score=374.60 Aligned_cols=235 Identities=29% Similarity=0.507 Sum_probs=199.5
Q ss_pred chHHHHHHHHHhCCC-CCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeec----CCEEEEccCCCCHHHHHHHHHH
Q 004198 528 QGLHKKIISTLLRPR-NWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDE 602 (769)
Q Consensus 528 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~----~~i~viGDiHG~~~~l~~~l~~ 602 (769)
.+..++||+.+.... ..+ +......++.+++.+||++|.+||++||+++++. +|++||||||||+.+|+++|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~ 87 (377)
T cd07418 9 NEWVHELMSVFEWSSRNLP-PSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLED 87 (377)
T ss_pred HHHHHHHHHHHHhcccccC-chhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHH
Confidence 445678888775432 222 2223346899999999999999999999999998 8999999999999999999999
Q ss_pred hCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhh
Q 004198 603 YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWA 682 (769)
Q Consensus 603 ~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~ 682 (769)
.++++.+. +|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..+||.+||..+|+.. +..+
T Consensus 88 ~g~~~~~~-----~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~-~~~l 161 (377)
T cd07418 88 AGFPDQNR-----FYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDK-GKHV 161 (377)
T ss_pred hCCCCCCc-----eEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCch-HHHH
Confidence 99876542 69999999999999999999999999999999999999999999999999999999999754 5679
Q ss_pred hHHHhHhhccccceEEEeceEEEEcCCC---------------------------CCCCCChHHhhhccCCc-ccCCCc-
Q 004198 683 WTRFNQLFNCLPLAALIEKKIICMHGGI---------------------------GRSIHSVEQIEKLERPI-TMDAGS- 733 (769)
Q Consensus 683 ~~~~~~~f~~lP~~~~i~~~i~~vHgGi---------------------------~~~~~~~~~i~~~~rp~-~~~~~~- 733 (769)
|+.++++|++||+++++++++||||||| +|.+.++++|+.++||. +.+..+
T Consensus 162 ~~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~ 241 (377)
T cd07418 162 YRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGS 241 (377)
T ss_pred HHHHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCc
Confidence 9999999999999999999999999999 45678999999999985 444433
Q ss_pred -cceeceeccCCCCCcc-ccc-CcceEEeehhhhhhhcC
Q 004198 734 -IILMDLLWFVLNISTI-LRS-MVLYIILFSLKIFISFI 769 (769)
Q Consensus 734 -~~~~dllWsdp~~~~~-~~~-~~~~~~~~~~~~~~~~~ 769 (769)
.+++|||||||..... ..+ .++.++.||.+...+|+
T Consensus 242 ~~i~~dlLWSDP~~~~g~~~~~~RG~g~~FG~~~~~~FL 280 (377)
T cd07418 242 NLIPGDVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEEFL 280 (377)
T ss_pred cccceeeEeeCCccCCCCCccCCCCCccccCHHHHHHHH
Confidence 2578999999986533 333 47778899999988874
No 15
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=7.3e-43 Score=369.92 Aligned_cols=223 Identities=30% Similarity=0.533 Sum_probs=200.0
Q ss_pred cchHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCC----EEEEccCCCCHHHHHHHHHH
Q 004198 527 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDE 602 (769)
Q Consensus 527 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~----i~viGDiHG~~~~l~~~l~~ 602 (769)
+..+++++++.+.+.+ .|+.+++.+||++|.++|++||+++++..| ++||||||||+.+|+++|+.
T Consensus 12 ~~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 12 TLEFVKEMIEWFKDQK----------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CHHHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 4566788999988753 478899999999999999999999999877 99999999999999999999
Q ss_pred hCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhh
Q 004198 603 YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWA 682 (769)
Q Consensus 603 ~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~ 682 (769)
.++++..+ +|||||||||||++|+||+.+|++||+.+|.++++||||||.+.++..+||..|+..+|+ ..+
T Consensus 82 ~g~~~~~~-----~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~----~~l 152 (316)
T cd07417 82 NGLPSETN-----PYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYN----EQM 152 (316)
T ss_pred cCCCCccC-----eEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhccc----HHH
Confidence 99876542 799999999999999999999999999999999999999999999999999999999884 468
Q ss_pred hHHHhHhhccccceEEEeceEEEEcCCC-CCCCCChHHhhhccCCcccCCCccceeceeccCCCCC-cccccCcceEEee
Q 004198 683 WTRFNQLFNCLPLAALIEKKIICMHGGI-GRSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNIS-TILRSMVLYIILF 760 (769)
Q Consensus 683 ~~~~~~~f~~lP~~~~i~~~i~~vHgGi-~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~~-~~~~~~~~~~~~~ 760 (769)
|+.+.++|++||++++++++++|||||| ++.+.++++|++++||.+.+.++ +++|+|||||.+. .+..+.++.+..|
T Consensus 153 ~~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~s~Rg~g~~f 231 (316)
T cd07417 153 FDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSG-LMCELLWSDPQPQPGRSPSKRGVGCQF 231 (316)
T ss_pred HHHHHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccc-cceeeeecCCCCCCCCCccCCCCceEe
Confidence 9999999999999999999999999999 56789999999999998776555 8999999999864 4455667778899
Q ss_pred hhhhhhhcC
Q 004198 761 SLKIFISFI 769 (769)
Q Consensus 761 ~~~~~~~~~ 769 (769)
|.+....|+
T Consensus 232 g~~~~~~Fl 240 (316)
T cd07417 232 GPDVTKRFL 240 (316)
T ss_pred CHHHHHHHH
Confidence 999987773
No 16
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=9e-43 Score=364.03 Aligned_cols=204 Identities=44% Similarity=0.766 Sum_probs=188.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHH
Q 004198 555 DSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI 634 (769)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l 634 (769)
+++++.+||++|+++|++||+++++..|++||||||||+.+|.++|+..+.++.+ +|||||||||||++|+||+
T Consensus 2 ~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~------~~vfLGD~VDrG~~s~e~l 75 (271)
T smart00156 2 YAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDT------NYVFLGDYVDRGPFSIEVI 75 (271)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCc------eEEEeCCccCCCCChHHHH
Confidence 5789999999999999999999999999999999999999999999999987765 8999999999999999999
Q ss_pred HHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhhccccceEEEeceEEEEcCCCCCCC
Q 004198 635 TLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSI 714 (769)
Q Consensus 635 ~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i~~~i~~vHgGi~~~~ 714 (769)
.+|++||+.+|.++++||||||.+.++..+||.+|+..+|+ ..+|..+.++|++||++++++++++|||||++|.+
T Consensus 76 ~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~----~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~~ 151 (271)
T smart00156 76 LLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG----EEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPDL 151 (271)
T ss_pred HHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC----HHHHHHHHHHHhhChhheEEcCeEEEEecCCCCcc
Confidence 99999999999999999999999999999999999999984 57999999999999999999999999999999999
Q ss_pred CChHHhhhccCCcccCCCccceeceeccCCCC--CcccccCcceEEeehhhhhhhcC
Q 004198 715 HSVEQIEKLERPITMDAGSIILMDLLWFVLNI--STILRSMVLYIILFSLKIFISFI 769 (769)
Q Consensus 715 ~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~--~~~~~~~~~~~~~~~~~~~~~~~ 769 (769)
.++++|+.++||.+.+.+. +++|+|||||.. ..+..+.++.+..||.+...+|+
T Consensus 152 ~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl 207 (271)
T smart00156 152 TTLDDIRKLKRPQEPPDEG-LLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDEFL 207 (271)
T ss_pred CCHHHHhcccCCCCCCchh-hhhheeecCCCcccCCCccCCCCCccccCHHHHHHHH
Confidence 9999999999998877655 899999999953 34455667788899999888773
No 17
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.8e-38 Score=354.30 Aligned_cols=304 Identities=22% Similarity=0.335 Sum_probs=245.0
Q ss_pred cceeecCCC---CCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCC
Q 004198 17 ETYWDTDED---APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA 93 (769)
Q Consensus 17 ~~~w~~~~~---~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~ 93 (769)
+++|..+.. +|.||.+|+++.+ +++||+|||....... ..+++|+||+.+++|+.++..
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~------~~~iyv~GG~~~~~~~------------~~~~v~~yD~~~~~W~~~~~~ 211 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQV------GNKIYSFGGEFTPNQP------------IDKHLYVFDLETRTWSISPAT 211 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEE------CCEEEEECCcCCCCCC------------eeCcEEEEECCCCEEEeCCCC
Confidence 378997765 6899999999999 8999999997543221 357899999999999998887
Q ss_pred CCCCc-ccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecC
Q 004198 94 GEPPS-PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGN 172 (769)
Q Consensus 94 g~~P~-~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~ 172 (769)
+..|. +|.+|++++++++||||||.... ..++++|+||+.+ ++|+++.+.+..|.+|++|++++.++ +|||+||.
T Consensus 212 g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t--~~W~~l~~~~~~P~~R~~h~~~~~~~-~iYv~GG~ 287 (470)
T PLN02193 212 GDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTT--NEWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGGV 287 (470)
T ss_pred CCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCC--CEEEEcCcCCCCCCCccceEEEEECC-EEEEECCC
Confidence 76665 46799999999999999998643 4679999999999 78999965555689999999988876 89999999
Q ss_pred CCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCC
Q 004198 173 DGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP 252 (769)
Q Consensus 173 ~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~ 252 (769)
+....++++++||+.++ +|+.++..+.+|.+|..|+++++ ++++|++||.+.. .+++++.||+.++ +|..++
T Consensus 288 ~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~--~~~dv~~yD~~t~---~W~~~~ 359 (470)
T PLN02193 288 SATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGC--EVDDVHYYDPVQD---KWTQVE 359 (470)
T ss_pred CCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCC--ccCceEEEECCCC---EEEEec
Confidence 88888899999999999 99999877777888998888765 7789999998643 4799999999877 666655
Q ss_pred --CCCCCcccceEEEEeCCEEEEEecccCCCC-----cccCCCcEEEEECCCCcEEeccCCccCCCCCCCCCCCCCccCc
Q 004198 253 --GVAPSPRYQHAAVFVGARLHVTGGALRGGR-----AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLEL 325 (769)
Q Consensus 253 --~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~-----~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (769)
+..|.+|..|++++++++|||+||...... .....+++++||+.+++|+.+...+.. ...|
T Consensus 360 ~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~------------~~~P 427 (470)
T PLN02193 360 TFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEE------------EETP 427 (470)
T ss_pred cCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCC------------CCCC
Confidence 456889999999999999999999854211 112357899999999999998765421 1225
Q ss_pred ccccceEEE--Ee-C-CEEEEEcCcCC-CccccceEEecCCC
Q 004198 326 MRRCRHASA--SI-G-VRIYIYGGLKG-DILLDDFLVAENSP 362 (769)
Q Consensus 326 ~~R~~hs~~--~~-~-~~iyv~GG~~~-~~~~~D~~~ld~~~ 362 (769)
.+|..|+++ .+ + +.|+||||+.+ +..++|+|.|++++
T Consensus 428 ~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 428 SSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 577766543 23 2 45999999975 58899999998765
No 18
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3e-37 Score=337.31 Aligned_cols=306 Identities=22% Similarity=0.284 Sum_probs=236.5
Q ss_pred cccceeecCCC----CCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEe
Q 004198 15 TLETYWDTDED----APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRI 90 (769)
Q Consensus 15 ~~~~~w~~~~~----~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l 90 (769)
+.+..|.++.. +|.||.+|+++++ +++||||||....... ..+++|+||+.+++|+++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~------~~~iyv~GG~~~~~~~------------~~~~~~~yd~~~~~W~~~ 65 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVV------GDKLYSFGGELKPNEH------------IDKDLYVFDFNTHTWSIA 65 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEE------CCEEEEECCccCCCCc------------eeCcEEEEECCCCEEEEc
Confidence 45667987765 7999999999999 8999999998643221 468999999999999999
Q ss_pred cCCCCCCc-ccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeec--CCCCCCccccEEEEECCcEEE
Q 004198 91 RPAGEPPS-PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ--GQGPGPRYGHVMDLVSQRYLV 167 (769)
Q Consensus 91 ~~~g~~P~-~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~--g~~p~~R~~hs~~~~~~~~l~ 167 (769)
++.+..|. .+.+|++++++++||+|||.... ..++++++||+.+ .+|+.+... ...|.+|.+|++++.++ +||
T Consensus 66 ~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t--~~W~~~~~~~~~~~p~~R~~~~~~~~~~-~iy 141 (341)
T PLN02153 66 PANGDVPRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVK--NEWTFLTKLDEEGGPEARTFHSMASDEN-HVY 141 (341)
T ss_pred CccCCCCCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEECCC--CEEEEeccCCCCCCCCCceeeEEEEECC-EEE
Confidence 88765444 35589999999999999998544 3578999999999 779988531 22388999999988876 899
Q ss_pred EEecCCCC------CccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCC-------CCcccc
Q 004198 168 SVSGNDGK------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS-------GAPLAD 234 (769)
Q Consensus 168 v~GG~~~~------~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~-------~~~l~d 234 (769)
|+||.+.. ..++++++||++++ +|+.++.++..|.+|..|++++ .++++|++||.... ...+++
T Consensus 142 v~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~ 218 (341)
T PLN02153 142 VFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNA 218 (341)
T ss_pred EECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCc
Confidence 99998642 24679999999999 9999998877778899888776 57789999986421 123689
Q ss_pred eEEEecCCCCceEEEeCC--CCCCCcccceEEEEeCCEEEEEecccCCC-----CcccCCCcEEEEECCCCcEEeccCCc
Q 004198 235 AYGLLMHRNGQWEWTLAP--GVAPSPRYQHAAVFVGARLHVTGGALRGG-----RAIEGEAAVAVLDTAAGVWLDRNGLV 307 (769)
Q Consensus 235 ~~~ld~~~~~~W~W~~~~--~~~P~~R~~hs~~~~~~~i~V~GG~~~~~-----~~~~~~~~v~~yd~~t~~W~~~~~~~ 307 (769)
++.||+.++ +|.++. +..|.+|..|++++++++||||||..... ......+++++||+++++|+.+....
T Consensus 219 v~~yd~~~~---~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~ 295 (341)
T PLN02153 219 VQFFDPASG---KWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECG 295 (341)
T ss_pred eEEEEcCCC---cEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCC
Confidence 999999877 666664 45688999999999999999999974211 01112568999999999999987543
Q ss_pred cCCCCCCCCCCCCCccCcccccceEEEEe--CCEEEEEcCcCCC-ccccceEEecCC
Q 004198 308 TSSRTSKGHGEHDPSLELMRRCRHASASI--GVRIYIYGGLKGD-ILLDDFLVAENS 361 (769)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~R~~hs~~~~--~~~iyv~GG~~~~-~~~~D~~~ld~~ 361 (769)
.+ ..|..|+.++++.+ +++||||||.++. ..++|+|.++..
T Consensus 296 ~~-------------~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 296 EP-------------AMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred CC-------------CCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 21 11334554555554 3489999999764 678999988654
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=5.1e-37 Score=300.08 Aligned_cols=297 Identities=25% Similarity=0.377 Sum_probs=245.3
Q ss_pred CCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCC----------CCC
Q 004198 27 PGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA----------GEP 96 (769)
Q Consensus 27 P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~----------g~~ 96 (769)
-+.|.+|+++.+ +++||-|||+...+.- ... -.=|+++++..+.+|+++++. ...
T Consensus 11 GPrRVNHAavaV------G~riYSFGGYCsGedy-~~~--------~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~V 75 (392)
T KOG4693|consen 11 GPRRVNHAAVAV------GSRIYSFGGYCSGEDY-DAK--------DPIDVHVLNAENYRWTKMPPGITKATIESPYPAV 75 (392)
T ss_pred Ccccccceeeee------cceEEecCCccccccc-ccC--------CcceeEEeeccceeEEecCcccccccccCCCCcc
Confidence 346899999999 9999999998754431 111 124899999999999999872 124
Q ss_pred CcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCC--C
Q 004198 97 PSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGND--G 174 (769)
Q Consensus 97 P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~--~ 174 (769)
|..|++|+.+.+++++|+.||.+....+-|-+|+||+++ ++|.+..+.|..|.+|.||++|++++ .+|||||+. .
T Consensus 76 PyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t--~~W~~p~v~G~vPgaRDGHsAcV~gn-~MyiFGGye~~a 152 (392)
T KOG4693|consen 76 PYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPET--NVWKKPEVEGFVPGARDGHSACVWGN-QMYIFGGYEEDA 152 (392)
T ss_pred chhhcCceEEEEcceEEEEcCccCcccccceeeeecccc--ccccccceeeecCCccCCceeeEECc-EEEEecChHHHH
Confidence 567999999999999999999988777889999999999 78999999999999999999999997 999999984 4
Q ss_pred CCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCC--------CcccceEEEecCCCCce
Q 004198 175 KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG--------APLADAYGLLMHRNGQW 246 (769)
Q Consensus 175 ~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~--------~~l~d~~~ld~~~~~~W 246 (769)
+++.+|++.+|+.+. +|..+...+.+|.-|.+|+++++ ++++|||||+.... .+-+.+..||..+. .|
T Consensus 153 ~~FS~d~h~ld~~Tm--tWr~~~Tkg~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~-aW 228 (392)
T KOG4693|consen 153 QRFSQDTHVLDFATM--TWREMHTKGDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATG-AW 228 (392)
T ss_pred HhhhccceeEeccce--eeeehhccCCCchhhhhhhhhhc-cceEEEeccccccCCCccchhhhhcceeEEEecccc-cc
Confidence 668899999999998 99999999999999999999976 58999999986542 23344566777654 44
Q ss_pred EEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCCccCCCCCCCCCCCCCccCcc
Q 004198 247 EWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELM 326 (769)
Q Consensus 247 ~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (769)
.-....++.|.+|..|++-+++++||+|||+++.. ....+++|+||+.+..|..+...+.- |.
T Consensus 229 ~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l--n~HfndLy~FdP~t~~W~~I~~~Gk~---------------P~ 291 (392)
T KOG4693|consen 229 TRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL--NVHFNDLYCFDPKTSMWSVISVRGKY---------------PS 291 (392)
T ss_pred ccCCCCCcCCCcccccceEEEcceEEEecccchhh--hhhhcceeecccccchheeeeccCCC---------------CC
Confidence 44444477899999999999999999999987654 33478999999999999999876542 66
Q ss_pred cccceEEEEeCCEEEEEcCcCC-----------C--------ccccceEEecCCC
Q 004198 327 RRCRHASASIGVRIYIYGGLKG-----------D--------ILLDDFLVAENSP 362 (769)
Q Consensus 327 ~R~~hs~~~~~~~iyv~GG~~~-----------~--------~~~~D~~~ld~~~ 362 (769)
+|.++++++.++++|+|||..- . .-++|+.+||.++
T Consensus 292 aRRRqC~~v~g~kv~LFGGTsP~~~~~~Spt~~~G~~~~~~LiD~SDLHvLDF~P 346 (392)
T KOG4693|consen 292 ARRRQCSVVSGGKVYLFGGTSPLPCHPLSPTNYNGMISPSGLIDLSDLHVLDFAP 346 (392)
T ss_pred cccceeEEEECCEEEEecCCCCCCCCCCCccccCCCCCcccccccccceeeecCh
Confidence 9999999999999999999743 0 2356777777665
No 20
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.3e-33 Score=320.25 Aligned_cols=281 Identities=23% Similarity=0.319 Sum_probs=230.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCC----CcEEEecCCCCCCcccccceEEEECCEEEEECccCC
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT----RKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGP 120 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~----~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~ 120 (769)
+++|+.|+|.....-. .--+|.+++.+ ++|.++++.+..|.||++|+++.+++.||++||...
T Consensus 120 ~~~ivgf~G~~~~~~~-------------~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~ 186 (470)
T PLN02193 120 GGKIVGFHGRSTDVLH-------------SLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFT 186 (470)
T ss_pred CCeEEEEeccCCCcEE-------------eeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCC
Confidence 8899999998643310 11245567655 799999988888999999999999999999999753
Q ss_pred -CCCCcCcEEEEEccCCcceEEEeeecCCCCC-CccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCC
Q 004198 121 -AGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNP 198 (769)
Q Consensus 121 -~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~-~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~ 198 (769)
.....+++|+||+.+ .+|+.++..+..|. +|.+|+++++++ .||||||.+....++++|+||+.++ +|+++.+
T Consensus 187 ~~~~~~~~v~~yD~~~--~~W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~ 261 (470)
T PLN02193 187 PNQPIDKHLYVFDLET--RTWSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDASRQYNGFYSFDTTTN--EWKLLTP 261 (470)
T ss_pred CCCCeeCcEEEEECCC--CEEEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCCCCCccEEEEECCCC--EEEEcCc
Confidence 333457899999999 77998876666665 467899988887 9999999988778999999999999 9999988
Q ss_pred CCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCC--CCCCCcccceEEEEeCCEEEEEec
Q 004198 199 EGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP--GVAPSPRYQHAAVFVGARLHVTGG 276 (769)
Q Consensus 199 ~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~--~~~P~~R~~hs~~~~~~~i~V~GG 276 (769)
++..|.+|..|++++ .+++||||||.+.. ..+++++.||+.++ +|..++ +.+|.+|.+|++++++++|||+||
T Consensus 262 ~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~-~~~~~~~~yd~~t~---~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG 336 (470)
T PLN02193 262 VEEGPTPRSFHSMAA-DEENVYVFGGVSAT-ARLKTLDSYNIVDK---KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYG 336 (470)
T ss_pred CCCCCCCccceEEEE-ECCEEEEECCCCCC-CCcceEEEEECCCC---EEEeCCCCCCCCCCCCCcEEEEECCcEEEEEC
Confidence 877789999998876 47799999998754 35789999999876 666654 345788999999999999999999
Q ss_pred ccCCCCcccCCCcEEEEECCCCcEEeccCCccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcCC--------
Q 004198 277 ALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-------- 348 (769)
Q Consensus 277 ~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~~-------- 348 (769)
..+. ..+++++||+.+++|+.+...+.. |.+|..|++++++++||||||...
T Consensus 337 ~~g~-----~~~dv~~yD~~t~~W~~~~~~g~~---------------P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 396 (470)
T PLN02193 337 FNGC-----EVDDVHYYDPVQDKWTQVETFGVR---------------PSERSVFASAAVGKHIVIFGGEIAMDPLAHVG 396 (470)
T ss_pred CCCC-----ccCceEEEECCCCEEEEeccCCCC---------------CCCcceeEEEEECCEEEEECCccCCccccccC
Confidence 7532 257899999999999998765332 458999999999999999999753
Q ss_pred -CccccceEEecCCCCccccC
Q 004198 349 -DILLDDFLVAENSPFQSDVN 368 (769)
Q Consensus 349 -~~~~~D~~~ld~~~~~~~~~ 368 (769)
...++|+|+||..+.+|...
T Consensus 397 ~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 397 PGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred ccceeccEEEEEcCcCEEEEc
Confidence 24678999999999888754
No 21
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.5e-35 Score=309.53 Aligned_cols=302 Identities=26% Similarity=0.460 Sum_probs=256.3
Q ss_pred CCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCccccc
Q 004198 23 DEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAA 102 (769)
Q Consensus 23 ~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~ 102 (769)
.++.|-||.||-++++ ...|++|||-++ + +..+++.||..+++|..-...|+.|.+.++
T Consensus 26 tGPvPrpRHGHRAVai------kELiviFGGGNE--G-------------iiDELHvYNTatnqWf~PavrGDiPpgcAA 84 (830)
T KOG4152|consen 26 TGPVPRPRHGHRAVAI------KELIVIFGGGNE--G-------------IIDELHVYNTATNQWFAPAVRGDIPPGCAA 84 (830)
T ss_pred cCCCCCccccchheee------eeeEEEecCCcc--c-------------chhhhhhhccccceeecchhcCCCCCchhh
Confidence 4678999999999999 889999999653 2 678999999999999999899999999999
Q ss_pred ceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeee----cCCCCCCccccEEEEECCcEEEEEecCC-----
Q 004198 103 HAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVV----QGQGPGPRYGHVMDLVSQRYLVSVSGND----- 173 (769)
Q Consensus 103 hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~----~g~~p~~R~~hs~~~~~~~~l~v~GG~~----- 173 (769)
|+.++.+++||+|||+-+-+.++||+|.+.... |.|.++.+ .|.+|.||.||+..++++ +.|+|||..
T Consensus 85 ~GfvcdGtrilvFGGMvEYGkYsNdLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGLaNdseD 161 (830)
T KOG4152|consen 85 FGFVCDGTRILVFGGMVEYGKYSNDLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGLANDSED 161 (830)
T ss_pred cceEecCceEEEEccEeeeccccchHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEeccccccccC
Confidence 999999999999999989999999999888777 99999854 578999999999988886 999999952
Q ss_pred ----CCCccCceeEEeCC--CCCceEEEcCCCCCCCCcccccEEEEec-----CCEEEEEcccCCCCCcccceEEEecCC
Q 004198 174 ----GKRVLSDAWALDTA--QKPYVWQRLNPEGDRPSARMYATASARS-----DGMFLLCGGRDASGAPLADAYGLLMHR 242 (769)
Q Consensus 174 ----~~~~~~dv~~~d~~--~~~~~W~~v~~~~~~P~~r~~hsa~~~~-----~g~l~v~GG~~~~~~~l~d~~~ld~~~ 242 (769)
-.+++||+|++++. .....|...-..+..|.+|-.|+++++. ..+|||+||.++ ..+.|+|.+|.++
T Consensus 162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~T 239 (830)
T KOG4152|consen 162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLDT 239 (830)
T ss_pred cccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeEEecce
Confidence 23489999999886 3446799998889999999999999872 238999999875 5799999999985
Q ss_pred CCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccC---CC-------CcccCCCcEEEEECCCCcEEeccCCccCCCC
Q 004198 243 NGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALR---GG-------RAIEGEAAVAVLDTAAGVWLDRNGLVTSSRT 312 (769)
Q Consensus 243 ~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~---~~-------~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~ 312 (769)
- +|...+..+..|.||.-|+++.++++||||||.-- .. ..-...+++-++|+++..|..+-....
T Consensus 240 l-~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~---- 314 (830)
T KOG4152|consen 240 L-TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTL---- 314 (830)
T ss_pred e-ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccc----
Confidence 4 66666667999999999999999999999999731 00 111236788999999999998865532
Q ss_pred CCCCCCCCCccCcccccceEEEEeCCEEEEEcCcCC-------CccccceEEecCCC
Q 004198 313 SKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-------DILLDDFLVAENSP 362 (769)
Q Consensus 313 ~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~~-------~~~~~D~~~ld~~~ 362 (769)
....+|.+|.+||+++++.+|||--|.+| ...+.|+|.||++.
T Consensus 315 -------ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTek 364 (830)
T KOG4152|consen 315 -------EDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEK 364 (830)
T ss_pred -------cccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccC
Confidence 23347899999999999999999999876 47789999999765
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=299.12 Aligned_cols=325 Identities=26% Similarity=0.420 Sum_probs=257.1
Q ss_pred eeecCCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCc
Q 004198 19 YWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPS 98 (769)
Q Consensus 19 ~w~~~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~ 98 (769)
.-+...+.|.||.+.++++-+. .+-|+||||....+. +..+++|+|+||+.++.|+++... ++|.
T Consensus 56 ~~e~~~~~PspRsn~sl~~nPe----keELilfGGEf~ngq----------kT~vYndLy~Yn~k~~eWkk~~sp-n~P~ 120 (521)
T KOG1230|consen 56 VVETSVPPPSPRSNPSLFANPE----KEELILFGGEFYNGQ----------KTHVYNDLYSYNTKKNEWKKVVSP-NAPP 120 (521)
T ss_pred eeeccCCCCCCCCCcceeeccC----cceeEEecceeecce----------eEEEeeeeeEEeccccceeEeccC-CCcC
Confidence 3445556789999999999876 458999999765533 345899999999999999999755 5788
Q ss_pred ccccceEEEEC-CEEEEECcc--CCCC---CCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecC
Q 004198 99 PRAAHAAAAVG-TMVVFQGGI--GPAG---HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGN 172 (769)
Q Consensus 99 ~R~~hs~~~~~-~~Iyv~GG~--~~~~---~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~ 172 (769)
||++|.++++. |.+|+|||. ++.+ ....|+|+||+.+ .+|+++...| .|.+|+||.|+++.. .|++|||.
T Consensus 121 pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~t--rkweql~~~g-~PS~RSGHRMvawK~-~lilFGGF 196 (521)
T KOG1230|consen 121 PRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKT--RKWEQLEFGG-GPSPRSGHRMVAWKR-QLILFGGF 196 (521)
T ss_pred CCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeecc--chheeeccCC-CCCCCccceeEEeee-eEEEEcce
Confidence 99999999986 799999994 2333 3468999999999 7799998744 899999999999997 99999997
Q ss_pred CC----CCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCC--------CCCcccceEEEec
Q 004198 173 DG----KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA--------SGAPLADAYGLLM 240 (769)
Q Consensus 173 ~~----~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~--------~~~~l~d~~~ld~ 240 (769)
.. ..++||||+||+++= +|+++.+.+..|.+|.+|++.+.++|.|||.||++. .+...+|+|.|+.
T Consensus 197 hd~nr~y~YyNDvy~FdLdty--kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p 274 (521)
T KOG1230|consen 197 HDSNRDYIYYNDVYAFDLDTY--KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKP 274 (521)
T ss_pred ecCCCceEEeeeeEEEeccce--eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecC
Confidence 43 347999999999874 999999988899999999999999999999999853 2567999999998
Q ss_pred CC--CCceEEEeCC--CCCCCcccceEEEEe-CCEEEEEecccCCCC-----cccCCCcEEEEECCCCcEEeccCCccCC
Q 004198 241 HR--NGQWEWTLAP--GVAPSPRYQHAAVFV-GARLHVTGGALRGGR-----AIEGEAAVAVLDTAAGVWLDRNGLVTSS 310 (769)
Q Consensus 241 ~~--~~~W~W~~~~--~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~-----~~~~~~~v~~yd~~t~~W~~~~~~~~~~ 310 (769)
.. ...|.|.++. +..|.||.+.++++. +++-+.|||..+-.. .....++++.||...+.|..........
T Consensus 275 ~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S 354 (521)
T KOG1230|consen 275 EDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKS 354 (521)
T ss_pred CcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhccCCC
Confidence 76 4589999886 788999999999998 569999999865110 1123789999999999999775443322
Q ss_pred CC--CC---------------CCC---------------------------------------------CCCCccCcccc
Q 004198 311 RT--SK---------------GHG---------------------------------------------EHDPSLELMRR 328 (769)
Q Consensus 311 ~~--~~---------------~~~---------------------------------------------~~~~~~~~~~R 328 (769)
.. .+ +.. +..+...+.+|
T Consensus 355 ~~~~~r~~~Kd~~k~~~~~~~G~~tkd~e~~~v~k~v~~~~d~l~i~v~v~~~g~~~~p~s~~e~s~~~~~e~~~~~~pr 434 (521)
T KOG1230|consen 355 PATSRRRSRKDQEKELQRPTVGPNTKDLEVQAVDKAVCPTTDSLFIYVGVWEPGEADYPESEDEASREGDREPDEGEFPR 434 (521)
T ss_pred CccccccccccccccccCcccCCCcccccceecceeeeecCCceEEEeecCCCCCCCCcccccccccccCCCCCCCCCcc
Confidence 20 00 000 11123447788
Q ss_pred cceEEEEeCCEEEEEcCcCC----CccccceEEecCCCCc
Q 004198 329 CRHASASIGVRIYIYGGLKG----DILLDDFLVAENSPFQ 364 (769)
Q Consensus 329 ~~hs~~~~~~~iyv~GG~~~----~~~~~D~~~ld~~~~~ 364 (769)
...-.++..+.+||+||.-+ ...+.|+|.|++...+
T Consensus 435 ~d~~~~v~~G~~~i~gGi~ee~d~q~tl~dfyal~~hr~~ 474 (521)
T KOG1230|consen 435 MDDELSVKVGVLYIGGGIFEERDWQPTLRDFYALDLHRNE 474 (521)
T ss_pred CCCccCcccceEEecCCCcccccccchHHHHhhhhhhhhh
Confidence 88888888889999999643 3568999988888766
No 23
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.2e-33 Score=319.27 Aligned_cols=271 Identities=20% Similarity=0.309 Sum_probs=241.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCC
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~ 124 (769)
.+.||++||...... ..+.+.+||+.++.|..+..+ |.+|..+++++++++||++||.+.+...
T Consensus 284 ~~~l~~vGG~~~~~~-------------~~~~ve~yd~~~~~w~~~a~m---~~~r~~~~~~~~~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQ-------------SLRSVECYDPKTNEWSSLAPM---PSPRCRVGVAVLNGKLYVVGGYDSGSDR 347 (571)
T ss_pred CCeEEEECCCCCCCc-------------ccceeEEecCCcCcEeecCCC---CcccccccEEEECCEEEEEccccCCCcc
Confidence 678999999986222 578999999999999999876 7999999999999999999998756678
Q ss_pred cCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCC
Q 004198 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (769)
Q Consensus 125 ~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~ 204 (769)
++++|+||+.+ ++|..+ .+|+.+|.+++++++++ .||++||.++...++.+++||+.++ +|+.+.++ +.
T Consensus 348 l~~ve~YD~~~--~~W~~~---a~M~~~R~~~~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m---~~ 416 (571)
T KOG4441|consen 348 LSSVERYDPRT--NQWTPV---APMNTKRSDFGVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPM---LT 416 (571)
T ss_pred cceEEEecCCC--Cceecc---CCccCccccceeEEECC-EEEEEeccccccccccEEEecCCCC--cccccCCC---Cc
Confidence 89999999999 669998 59999999999999997 9999999999999999999999999 99999887 56
Q ss_pred cccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcc
Q 004198 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (769)
Q Consensus 205 ~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~ 284 (769)
+|..|+++ ..+|+||++||.+.....++.+..||+.++ +|...+.+ +.+|.+|++++++++||++||.++..
T Consensus 417 ~r~~~gv~-~~~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M-~~~R~~~g~a~~~~~iYvvGG~~~~~--- 488 (571)
T KOG4441|consen 417 RRSGHGVA-VLGGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPM-NTRRSGFGVAVLNGKIYVVGGFDGTS--- 488 (571)
T ss_pred ceeeeEEE-EECCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCc-ccccccceEEEECCEEEEECCccCCC---
Confidence 66666655 468899999999888768999999999999 99999887 69999999999999999999988732
Q ss_pred cCCCcEEEEECCCCcEEeccCCccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcCCCccccceEEecCCCCc
Q 004198 285 EGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQ 364 (769)
Q Consensus 285 ~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~~~~~~~D~~~ld~~~~~ 364 (769)
....+++||+.+++|+.+..+.. +|..+++++++++||+.||+++...++.+..+|-.+-+
T Consensus 489 -~~~~VE~ydp~~~~W~~v~~m~~------------------~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 489 -ALSSVERYDPETNQWTMVAPMTS------------------PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred -ccceEEEEcCCCCceeEcccCcc------------------ccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 25669999999999999988855 99999999999999999999999999999999877777
Q ss_pred cccCC
Q 004198 365 SDVNS 369 (769)
Q Consensus 365 ~~~~~ 369 (769)
|....
T Consensus 550 W~~~~ 554 (571)
T KOG4441|consen 550 WTEVT 554 (571)
T ss_pred eeeCC
Confidence 66433
No 24
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=316.39 Aligned_cols=257 Identities=23% Similarity=0.387 Sum_probs=229.3
Q ss_pred CCCCCCCCcccccceeecCCCCCCCccccEEEEecccCCCCCEEEEEcCCCC-CCCCCCCCCCCccccccCCcEEEEECC
Q 004198 5 PWLHPAPSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATA-IEGGATSSAPGIRLAGVTNSVHLYDVL 83 (769)
Q Consensus 5 ~~~~~~~~y~~~~~~w~~~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~-~~~~~~~~~~~~~~~~~~~dv~~yD~~ 83 (769)
.......+||+.++.|...+++|.+|..++++++ +++||++||.+. .. ..+.+++||+.
T Consensus 298 ~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~------~~~lYv~GG~~~~~~--------------~l~~ve~YD~~ 357 (571)
T KOG4441|consen 298 QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL------NGKLYVVGGYDSGSD--------------RLSSVERYDPR 357 (571)
T ss_pred cccceeEEecCCcCcEeecCCCCcccccccEEEE------CCEEEEEccccCCCc--------------ccceEEEecCC
Confidence 3456678999999999999999999999999999 999999999984 22 57899999999
Q ss_pred CCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECC
Q 004198 84 TRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQ 163 (769)
Q Consensus 84 ~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~ 163 (769)
+++|+.++++ +.+|..|+++++++.||++||.+ +...++++++||+.+ ++|+.+ ++++.+|++|+++++++
T Consensus 358 ~~~W~~~a~M---~~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp~~--~~W~~v---a~m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 358 TNQWTPVAPM---NTKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDPVT--NKWTPV---APMLTRRSGHGVAVLGG 428 (571)
T ss_pred CCceeccCCc---cCccccceeEEECCEEEEEeccc-cccccccEEEecCCC--Cccccc---CCCCcceeeeEEEEECC
Confidence 9999998876 68999999999999999999986 556788999999999 779999 68999999999999987
Q ss_pred cEEEEEecCCCCC-ccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCC
Q 004198 164 RYLVSVSGNDGKR-VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHR 242 (769)
Q Consensus 164 ~~l~v~GG~~~~~-~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~ 242 (769)
+||++||.++.. .++.|.+||+.++ +|+.++++ +.+|.+|.++ ..++.||++||.+. ...+..+.+||+.+
T Consensus 429 -~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M---~~~R~~~g~a-~~~~~iYvvGG~~~-~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 429 -KLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPM---NTRRSGFGVA-VLNGKIYVVGGFDG-TSALSSVERYDPET 500 (571)
T ss_pred -EEEEEcCcCCCccccceEEEEcCCCC--ceeecCCc---ccccccceEE-EECCEEEEECCccC-CCccceEEEEcCCC
Confidence 999999998887 9999999999999 99999988 6778877755 46889999999988 44577799999999
Q ss_pred CCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCC
Q 004198 243 NGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (769)
Q Consensus 243 ~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 306 (769)
+ +|+.++.+ +.+|..++++.+++++|++||..+... ++.+.+||+++++|+....+
T Consensus 501 ~---~W~~v~~m-~~~rs~~g~~~~~~~ly~vGG~~~~~~----l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 501 N---QWTMVAPM-TSPRSAVGVVVLGGKLYAVGGFDGNNN----LNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred C---ceeEcccC-ccccccccEEEECCEEEEEecccCccc----cceeEEcCCCCCceeeCCCc
Confidence 8 89998655 699999999999999999999765543 78999999999999999883
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1e-31 Score=294.60 Aligned_cols=279 Identities=22% Similarity=0.290 Sum_probs=212.9
Q ss_pred CCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEEC--CCCcEEEecCCCCCC-ccc
Q 004198 24 EDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDV--LTRKWTRIRPAGEPP-SPR 100 (769)
Q Consensus 24 ~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~--~~~~W~~l~~~g~~P-~~R 100 (769)
+++|.||..++++++ +++|||+||.. .+++++||+ .+++|++++++ | .+|
T Consensus 2 ~~lp~~~~~~~~~~~------~~~vyv~GG~~------------------~~~~~~~d~~~~~~~W~~l~~~---p~~~R 54 (346)
T TIGR03547 2 PDLPVGFKNGTGAII------GDKVYVGLGSA------------------GTSWYKLDLKKPSKGWQKIADF---PGGPR 54 (346)
T ss_pred CCCCccccCceEEEE------CCEEEEEcccc------------------CCeeEEEECCCCCCCceECCCC---CCCCc
Confidence 578999999998888 89999999952 256899997 57889999865 5 589
Q ss_pred ccceEEEECCEEEEECccCCCC-----CCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCC
Q 004198 101 AAHAAAAVGTMVVFQGGIGPAG-----HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK 175 (769)
Q Consensus 101 ~~hs~~~~~~~Iyv~GG~~~~~-----~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~ 175 (769)
..|++++++++|||+||..... ..++++|+||+.+ .+|+++. ..+|.+|.+|+++...+++||++||.+..
T Consensus 55 ~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~--~~W~~~~--~~~p~~~~~~~~~~~~~g~IYviGG~~~~ 130 (346)
T TIGR03547 55 NQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK--NSWQKLD--TRSPVGLLGASGFSLHNGQAYFTGGVNKN 130 (346)
T ss_pred ccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCC--CEEecCC--CCCCCcccceeEEEEeCCEEEEEcCcChH
Confidence 9999999999999999975322 2468999999999 7799995 25677888888774444599999998642
Q ss_pred C----------------------------------ccCceeEEeCCCCCceEEEcCCCCCCCC-cccccEEEEecCCEEE
Q 004198 176 R----------------------------------VLSDAWALDTAQKPYVWQRLNPEGDRPS-ARMYATASARSDGMFL 220 (769)
Q Consensus 176 ~----------------------------------~~~dv~~~d~~~~~~~W~~v~~~~~~P~-~r~~hsa~~~~~g~l~ 220 (769)
. .++++++||+.++ +|+.+.++ |. +|..|+++ ..+++||
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~~~~---p~~~r~~~~~~-~~~~~iy 204 (346)
T TIGR03547 131 IFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNLGEN---PFLGTAGSAIV-HKGNKLL 204 (346)
T ss_pred HHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeECccC---CCCcCCCceEE-EECCEEE
Confidence 1 2478999999999 99999766 54 45555444 5688999
Q ss_pred EEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcc-------cceEEEEeCCEEEEEecccCCCCc----------
Q 004198 221 LCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPR-------YQHAAVFVGARLHVTGGALRGGRA---------- 283 (769)
Q Consensus 221 v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R-------~~hs~~~~~~~i~V~GG~~~~~~~---------- 283 (769)
|+||....+....+++.|+... .+.+|...+.+ |.+| .+|++++++++|||+||.......
T Consensus 205 v~GG~~~~~~~~~~~~~y~~~~-~~~~W~~~~~m-~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~ 282 (346)
T TIGR03547 205 LINGEIKPGLRTAEVKQYLFTG-GKLEWNKLPPL-PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYA 282 (346)
T ss_pred EEeeeeCCCccchheEEEEecC-CCceeeecCCC-CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccc
Confidence 9999865544446677666531 12378777765 3443 467788899999999997632110
Q ss_pred ---ccCCCcEEEEECCCCcEEeccCCccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcCC-CccccceEEec
Q 004198 284 ---IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-DILLDDFLVAE 359 (769)
Q Consensus 284 ---~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~~-~~~~~D~~~ld 359 (769)
......+++||+++++|+.+..++. +|..+++++++++|||+||.+. ...++|++.+-
T Consensus 283 ~~~~~~~~~~e~yd~~~~~W~~~~~lp~------------------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 283 HEGLIKAWSSEVYALDNGKWSKVGKLPQ------------------GLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cCCCCceeEeeEEEecCCcccccCCCCC------------------CceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 0012468999999999999988754 8888999999999999999875 46788887653
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1e-32 Score=270.03 Aligned_cols=241 Identities=23% Similarity=0.383 Sum_probs=210.8
Q ss_pred CcccccceeecCCC-------------CCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEE
Q 004198 12 SYRTLETYWDTDED-------------APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVH 78 (769)
Q Consensus 12 ~y~~~~~~w~~~~~-------------~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~ 78 (769)
.+|..+-.|.+.++ .|..|+||+.+.+ .+++||+||++.+++ +.+-+|
T Consensus 48 ~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y------~d~~yvWGGRND~eg-------------aCN~Ly 108 (392)
T KOG4693|consen 48 VLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY------QDKAYVWGGRNDDEG-------------ACNLLY 108 (392)
T ss_pred EeeccceeEEecCcccccccccCCCCccchhhcCceEEEE------cceEEEEcCccCccc-------------ccceee
Confidence 34555666765544 4567999999999 999999999998776 679999
Q ss_pred EEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccC-CCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccE
Q 004198 79 LYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIG-PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHV 157 (769)
Q Consensus 79 ~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~-~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs 157 (769)
+||+++++|.+....|-.|.+|-+|++|++++..|||||.. .....++|+++||+.| ++|..+.+.|.+|.=|.-|+
T Consensus 109 ~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~T--mtWr~~~Tkg~PprwRDFH~ 186 (392)
T KOG4693|consen 109 EFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFAT--MTWREMHTKGDPPRWRDFHT 186 (392)
T ss_pred eeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccc--eeeeehhccCCCchhhhhhh
Confidence 99999999999999999999999999999999999999964 4456779999999999 88999999999999999999
Q ss_pred EEEECCcEEEEEecCCCC---------CccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCC
Q 004198 158 MDLVSQRYLVSVSGNDGK---------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS 228 (769)
Q Consensus 158 ~~~~~~~~l~v~GG~~~~---------~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~ 228 (769)
++++++ .+|||||.... .+.+.+-.+|+.++ .|....+.+..|..|+.|++.+ .|++||+|||+++.
T Consensus 187 a~~~~~-~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~--aW~r~p~~~~~P~GRRSHS~fv-Yng~~Y~FGGYng~ 262 (392)
T KOG4693|consen 187 ASVIDG-MMYIFGGRSDESGPFHSIHEQYCDTIMALDLATG--AWTRTPENTMKPGGRRSHSTFV-YNGKMYMFGGYNGT 262 (392)
T ss_pred hhhccc-eEEEeccccccCCCccchhhhhcceeEEEecccc--ccccCCCCCcCCCcccccceEE-EcceEEEecccchh
Confidence 999985 99999998532 24566778999999 9999988888899999999986 58899999999875
Q ss_pred C-CcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEeccc
Q 004198 229 G-APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGAL 278 (769)
Q Consensus 229 ~-~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~ 278 (769)
- .-++|+|.||+.+. .|..+.+.+..|++|..+++++.+++||+|||..
T Consensus 263 ln~HfndLy~FdP~t~-~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 263 LNVHFNDLYCFDPKTS-MWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred hhhhhcceeecccccc-hheeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence 3 34899999999854 7888888899999999999999999999999975
No 27
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=303.81 Aligned_cols=297 Identities=29% Similarity=0.445 Sum_probs=246.3
Q ss_pred CCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCccccc
Q 004198 23 DEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAA 102 (769)
Q Consensus 23 ~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~ 102 (769)
....|.+|.+|+++.+ ++++|+|||....... ...++|+||..+..|.+....|..|.+|++
T Consensus 54 ~~~~p~~R~~hs~~~~------~~~~~vfGG~~~~~~~------------~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g 115 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLI------GNKLYVFGGYGSGDRL------------TDLDLYVLDLESQLWTKPAATGDEPSPRYG 115 (482)
T ss_pred CCCCcchhhccceeEE------CCEEEEECCCCCCCcc------------ccceeEEeecCCcccccccccCCCCCcccc
Confidence 3557899999999999 8999999998765542 111799999999999999999999999999
Q ss_pred ceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCC-ccCce
Q 004198 103 HAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR-VLSDA 181 (769)
Q Consensus 103 hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~-~~~dv 181 (769)
|++++++++||+|||........++++.||+.+ .+|..+.+.+.+|.+|.+|+++++++ ++|||||.+... .+||+
T Consensus 116 ~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t--~~W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~~~ndl 192 (482)
T KOG0379|consen 116 HSLSAVGDKLYLFGGTDKKYRNLNELHSLDLST--RTWSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGDSLNDL 192 (482)
T ss_pred eeEEEECCeEEEEccccCCCCChhheEeccCCC--CcEEEecCcCCCCCCcccceEEEECC-EEEEECCccCcccceeee
Confidence 999999999999999876566689999999999 77999999999999999999999995 999999998776 89999
Q ss_pred eEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCC--CCCCCcc
Q 004198 182 WALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP--GVAPSPR 259 (769)
Q Consensus 182 ~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~--~~~P~~R 259 (769)
|+||+++. +|.++...+..|.||.+|+++++.+ +++++||.+.....++|+|.||+.+ |+|.... +..|.+|
T Consensus 193 ~i~d~~~~--~W~~~~~~g~~P~pR~gH~~~~~~~-~~~v~gG~~~~~~~l~D~~~ldl~~---~~W~~~~~~g~~p~~R 266 (482)
T KOG0379|consen 193 HIYDLETS--TWSELDTQGEAPSPRYGHAMVVVGN-KLLVFGGGDDGDVYLNDVHILDLST---WEWKLLPTGGDLPSPR 266 (482)
T ss_pred eeeccccc--cceecccCCCCCCCCCCceEEEECC-eEEEEeccccCCceecceEeeeccc---ceeeeccccCCCCCCc
Confidence 99999999 8999999999999999999998766 5666666555557899999999985 6887665 7889999
Q ss_pred cceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCCccCCCCCCCCCCCCCccCcccccceEEEEeCC-
Q 004198 260 YQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGV- 338 (769)
Q Consensus 260 ~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~- 338 (769)
+.|++++.+.+++++||..... ...+.++|.||.++..|..+..... ..+.+|..|+.+....
T Consensus 267 ~~h~~~~~~~~~~l~gG~~~~~--~~~l~~~~~l~~~~~~w~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 330 (482)
T KOG0379|consen 267 SGHSLTVSGDHLLLFGGGTDPK--QEPLGDLYGLDLETLVWSKVESVGV--------------VRPSPRLGHAAELIDEL 330 (482)
T ss_pred ceeeeEEECCEEEEEcCCcccc--cccccccccccccccceeeeecccc--------------ccccccccccceeeccC
Confidence 9999999999999999976541 1237889999999999999988861 1245888888888764
Q ss_pred ---EEEEEcCcCC-CccccceEEecCCC
Q 004198 339 ---RIYIYGGLKG-DILLDDFLVAENSP 362 (769)
Q Consensus 339 ---~iyv~GG~~~-~~~~~D~~~ld~~~ 362 (769)
...++||... ....++++.+....
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (482)
T KOG0379|consen 331 GKDGLGILGGNQILGERLADVFSLQIKL 358 (482)
T ss_pred CccceeeecCccccccchhhcccccccc
Confidence 3455555322 24445555544433
No 28
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.4e-31 Score=288.71 Aligned_cols=262 Identities=24% Similarity=0.376 Sum_probs=207.8
Q ss_pred CCCcEEEecCC-CCCCcccccceEEEECCEEEEECccCC-CCCCcCcEEEEEccCCcceEEEeeecCCCCC-CccccEEE
Q 004198 83 LTRKWTRIRPA-GEPPSPRAAHAAAAVGTMVVFQGGIGP-AGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG-PRYGHVMD 159 (769)
Q Consensus 83 ~~~~W~~l~~~-g~~P~~R~~hs~~~~~~~Iyv~GG~~~-~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~-~R~~hs~~ 159 (769)
...+|.++... +..|.||..|++++++++|||+||... .....+++|+||+.+ .+|.++++.+..|. .+.+|+++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNT--HTWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCC--CEEEEcCccCCCCCCccCceEEE
Confidence 55679999874 357899999999999999999999753 233468999999999 77999865444444 35588888
Q ss_pred EECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCC--CCCCcccccEEEEecCCEEEEEcccCCCC-----Ccc
Q 004198 160 LVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEG--DRPSARMYATASARSDGMFLLCGGRDASG-----APL 232 (769)
Q Consensus 160 ~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~--~~P~~r~~hsa~~~~~g~l~v~GG~~~~~-----~~l 232 (769)
++++ +||+|||.+....++++++||+.++ +|+.++.+. ..|.+|..|++++ .+++|||+||.+..+ ..+
T Consensus 83 ~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 83 AVGT-KLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EECC-EEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCccc
Confidence 8887 8999999988778899999999998 999987652 2378899888875 577999999986432 246
Q ss_pred cceEEEecCCCCceEEEeCCC--CCCCcccceEEEEeCCEEEEEecccCC----CCcccCCCcEEEEECCCCcEEeccCC
Q 004198 233 ADAYGLLMHRNGQWEWTLAPG--VAPSPRYQHAAVFVGARLHVTGGALRG----GRAIEGEAAVAVLDTAAGVWLDRNGL 306 (769)
Q Consensus 233 ~d~~~ld~~~~~~W~W~~~~~--~~P~~R~~hs~~~~~~~i~V~GG~~~~----~~~~~~~~~v~~yd~~t~~W~~~~~~ 306 (769)
++++.||..++ +|..++. .+|.+|.+|++++++++|||+||.... +......+++++||+++++|+++...
T Consensus 159 ~~v~~yd~~~~---~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 159 RTIEAYNIADG---KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ceEEEEECCCC---eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 78999999877 7777664 346889999999999999999997521 11112257899999999999999764
Q ss_pred ccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcC---------CCccccceEEecCCCCccccC
Q 004198 307 VTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK---------GDILLDDFLVAENSPFQSDVN 368 (769)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~---------~~~~~~D~~~ld~~~~~~~~~ 368 (769)
+.. |.+|..|++++++++||||||.. ....++|+|.+|..+.+|...
T Consensus 236 g~~---------------P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 236 GAK---------------PSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred CCC---------------CCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence 321 45899999999999999999973 234578999999998887644
No 29
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.8e-31 Score=292.57 Aligned_cols=288 Identities=19% Similarity=0.223 Sum_probs=217.4
Q ss_pred eeecCCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECC--CCcEEEecCCCCC
Q 004198 19 YWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVL--TRKWTRIRPAGEP 96 (769)
Q Consensus 19 ~w~~~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~--~~~W~~l~~~g~~ 96 (769)
.++..+++|.||..++++.+ +++|||+||.. .+.+++||+. +++|.++++. +
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~------~~~iyv~gG~~------------------~~~~~~~d~~~~~~~W~~l~~~--p 71 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAID------NNTVYVGLGSA------------------GTSWYKLDLNAPSKGWTKIAAF--P 71 (376)
T ss_pred ecccCCCCCcCccCCeEEEE------CCEEEEEeCCC------------------CCeEEEEECCCCCCCeEECCcC--C
Confidence 47788999999998898888 89999999962 1358899987 4789998755 2
Q ss_pred CcccccceEEEECCEEEEECccCC-C----CCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEec
Q 004198 97 PSPRAAHAAAAVGTMVVFQGGIGP-A----GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSG 171 (769)
Q Consensus 97 P~~R~~hs~~~~~~~Iyv~GG~~~-~----~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG 171 (769)
..+|..|++++++++|||+||... . ...++++|+||+.+ ++|+++.. ..|.+|.+|+++++.+++||++||
T Consensus 72 ~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~--n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 72 GGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT--NSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGG 147 (376)
T ss_pred CCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC--CEEEeCCC--CCCCcccceEEEEeeCCEEEEECC
Confidence 257999999999999999999754 1 13468999999999 77999952 357788889887744569999999
Q ss_pred CCCC----------------------------------CccCceeEEeCCCCCceEEEcCCCCCCCC-cccccEEEEecC
Q 004198 172 NDGK----------------------------------RVLSDAWALDTAQKPYVWQRLNPEGDRPS-ARMYATASARSD 216 (769)
Q Consensus 172 ~~~~----------------------------------~~~~dv~~~d~~~~~~~W~~v~~~~~~P~-~r~~hsa~~~~~ 216 (769)
.+.. ...+++++||+.++ +|+.+.++ |. +|..| +++..+
T Consensus 148 ~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~--~W~~~~~~---p~~~~~~~-a~v~~~ 221 (376)
T PRK14131 148 VNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN--QWKNAGES---PFLGTAGS-AVVIKG 221 (376)
T ss_pred CCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC--eeeECCcC---CCCCCCcc-eEEEEC
Confidence 7532 12578999999999 99998765 54 45545 445568
Q ss_pred CEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCccc--------ceEEEEeCCEEEEEecccCCCCc-----
Q 004198 217 GMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRY--------QHAAVFVGARLHVTGGALRGGRA----- 283 (769)
Q Consensus 217 g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~--------~hs~~~~~~~i~V~GG~~~~~~~----- 283 (769)
++||++||....+....++|.++.+. .+.+|...+.+ |.+|. ++.+++++++|||+||.......
T Consensus 222 ~~iYv~GG~~~~~~~~~~~~~~~~~~-~~~~W~~~~~~-p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~ 299 (376)
T PRK14131 222 NKLWLINGEIKPGLRTDAVKQGKFTG-NNLKWQKLPDL-PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQN 299 (376)
T ss_pred CEEEEEeeeECCCcCChhheEEEecC-CCcceeecCCC-CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhc
Confidence 89999999866555566777665421 12378887755 44442 33467789999999997642210
Q ss_pred --------ccCCCcEEEEECCCCcEEeccCCccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcCC-Cccccc
Q 004198 284 --------IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-DILLDD 354 (769)
Q Consensus 284 --------~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~~-~~~~~D 354 (769)
......+++||+++++|+.+..++. +|..+++++++++|||+||... ...++|
T Consensus 300 ~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~------------------~r~~~~av~~~~~iyv~GG~~~~~~~~~~ 361 (376)
T PRK14131 300 GKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ------------------GLAYGVSVSWNNGVLLIGGETAGGKAVSD 361 (376)
T ss_pred CCcccccCCcceeehheEEecCCcccccCcCCC------------------CccceEEEEeCCEEEEEcCCCCCCcEeee
Confidence 0112347899999999999987754 8899999999999999999864 367899
Q ss_pred eEEecCCC
Q 004198 355 FLVAENSP 362 (769)
Q Consensus 355 ~~~ld~~~ 362 (769)
++.++.+.
T Consensus 362 v~~~~~~~ 369 (376)
T PRK14131 362 VTLLSWDG 369 (376)
T ss_pred EEEEEEcC
Confidence 98887664
No 30
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-32 Score=310.96 Aligned_cols=253 Identities=11% Similarity=0.113 Sum_probs=214.3
Q ss_pred CCCcccccceeecCCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEE
Q 004198 10 APSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTR 89 (769)
Q Consensus 10 ~~~y~~~~~~w~~~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~ 89 (769)
.-+||+.++.|...+++|.+|.+|+++++ +++||++||...... ..+++++||+.+++|..
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~l------~~~IYviGG~~~~~~-------------~~~~v~~Yd~~~n~W~~ 334 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAIV------DNEIIIAGGYNFNNP-------------SLNKVYKINIENKIHVE 334 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEEE------CCEEEEEcCCCCCCC-------------ccceEEEEECCCCeEee
Confidence 35799999999999999999999999999 999999999753221 46889999999999998
Q ss_pred ecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEE
Q 004198 90 IRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSV 169 (769)
Q Consensus 90 l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~ 169 (769)
++++ |.+|..|++++++++||++||..+. ...+++++||+.+ .+|..+ +++|.+|.+|+++++++ +||++
T Consensus 335 ~~~m---~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~--~~W~~~---~~mp~~r~~~~~~~~~g-~IYvi 404 (557)
T PHA02713 335 LPPM---IKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGD--DKWKML---PDMPIALSSYGMCVLDQ-YIYII 404 (557)
T ss_pred CCCC---cchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCC--CeEEEC---CCCCcccccccEEEECC-EEEEE
Confidence 8765 7899999999999999999997533 4578899999999 679998 58999999999988886 99999
Q ss_pred ecCCCC------------------CccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCc
Q 004198 170 SGNDGK------------------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (769)
Q Consensus 170 GG~~~~------------------~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~ 231 (769)
||.++. ..++.+++||++++ +|+.++++ |.+|..|++++ .+++||++||.+.....
T Consensus 405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m---~~~r~~~~~~~-~~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNF---WTGTIRPGVVS-HKDDIYVVCDIKDEKNV 478 (557)
T ss_pred eCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCC---CcccccCcEEE-ECCEEEEEeCCCCCCcc
Confidence 997642 13678999999999 99999876 77888777665 57899999998754333
Q ss_pred ccceEEEecCC-CCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCCcc
Q 004198 232 LADAYGLLMHR-NGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVT 308 (769)
Q Consensus 232 l~d~~~ld~~~-~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 308 (769)
.+.+++||+.+ + +|..++.+ |.+|..+++++++++||++||..+. ..+++||+.+++|+.+.+...
T Consensus 479 ~~~ve~Ydp~~~~---~W~~~~~m-~~~r~~~~~~~~~~~iyv~Gg~~~~-------~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 479 KTCIFRYNTNTYN---GWELITTT-ESRLSALHTILHDNTIMMLHCYESY-------MLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred ceeEEEecCCCCC---CeeEcccc-CcccccceeEEECCEEEEEeeecce-------eehhhcCcccccccchhhhcC
Confidence 45679999998 6 78888765 7899999999999999999997652 368999999999999887743
No 31
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-31 Score=306.13 Aligned_cols=252 Identities=13% Similarity=0.120 Sum_probs=213.8
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCcc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~ 154 (769)
..+++||+.+++|..++++ |.+|..|+++++++.||++||........+++++||+.+ ++|.++ .++|.+|.
T Consensus 272 ~~v~~yd~~~~~W~~l~~m---p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~W~~~---~~m~~~R~ 343 (557)
T PHA02713 272 PCILVYNINTMEYSVISTI---PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIEN--KIHVEL---PPMIKNRC 343 (557)
T ss_pred CCEEEEeCCCCeEEECCCC---CccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCC--CeEeeC---CCCcchhh
Confidence 5789999999999999865 788999999999999999999754445678999999999 679988 58999999
Q ss_pred ccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCC-----
Q 004198 155 GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG----- 229 (769)
Q Consensus 155 ~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~----- 229 (769)
+|+++++++ +||++||.++...++++++||+.++ +|+.++++ |.+|..|++++ .+++||++||.+...
T Consensus 344 ~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~m---p~~r~~~~~~~-~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 344 RFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDM---PIALSSYGMCV-LDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred ceeEEEECC-EEEEECCcCCCCCCceEEEEECCCC--eEEECCCC---CcccccccEEE-ECCEEEEEeCCCcccccccc
Confidence 999988887 9999999987777899999999999 99999876 78888887775 588999999986431
Q ss_pred ------------CcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCC
Q 004198 230 ------------APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAA 297 (769)
Q Consensus 230 ------------~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t 297 (769)
..++.++.||+.++ +|..++.+ +.+|.+|++++++++|||+||.++... ..+.+++||+++
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td---~W~~v~~m-~~~r~~~~~~~~~~~IYv~GG~~~~~~---~~~~ve~Ydp~~ 489 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNN---IWETLPNF-WTGTIRPGVVSHKDDIYVVCDIKDEKN---VKTCIFRYNTNT 489 (557)
T ss_pred cccccccccccccccceEEEECCCCC---eEeecCCC-CcccccCcEEEECCEEEEEeCCCCCCc---cceeEEEecCCC
Confidence 12678999999988 88888766 689999999999999999999764321 134589999999
Q ss_pred -CcEEeccCCccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcCCCccccceEEecCCCCccccCC
Q 004198 298 -GVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNS 369 (769)
Q Consensus 298 -~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~~~~~~~D~~~ld~~~~~~~~~~ 369 (769)
++|+.+..++. +|..+++++++++||++||+++. ..+.++|..+-+|....
T Consensus 490 ~~~W~~~~~m~~------------------~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 490 YNGWELITTTES------------------RLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CCCeeEccccCc------------------ccccceeEEECCEEEEEeeecce---eehhhcCcccccccchh
Confidence 89999998855 99999999999999999999883 35667777777766433
No 32
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=2.3e-30 Score=281.00 Aligned_cols=275 Identities=16% Similarity=0.197 Sum_probs=206.4
Q ss_pred CCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCC--CcEEEecCCCCCCcccccceE
Q 004198 28 GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT--RKWTRIRPAGEPPSPRAAHAA 105 (769)
Q Consensus 28 ~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~--~~W~~l~~~g~~P~~R~~hs~ 105 (769)
..+.||.+.++ ++.||++||....... .........++++|+|+... .+|..+.+ +|.+|..+++
T Consensus 2 ~~~~g~~~~~~------~~~l~v~GG~~~~~~~----~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~---lp~~r~~~~~ 68 (323)
T TIGR03548 2 LGVAGCYAGII------GDYILVAGGCNFPEDP----LAEGGKKKNYKGIYIAKDENSNLKWVKDGQ---LPYEAAYGAS 68 (323)
T ss_pred CceeeEeeeEE------CCEEEEeeccCCCCCc----hhhCCcEEeeeeeEEEecCCCceeEEEccc---CCccccceEE
Confidence 45678899999 9999999998764310 00000122578999996333 26998765 4788998999
Q ss_pred EEECCEEEEECccCCCCCCcCcEEEEEccCCcc--eEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeE
Q 004198 106 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKF--KWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWA 183 (769)
Q Consensus 106 ~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~--~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~ 183 (769)
+++++.||++||... ...++++|+||+.++.+ +|..+ +++|.+|.+|+++++++ +||++||......++++|+
T Consensus 69 ~~~~~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~---~~lp~~~~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~ 143 (323)
T TIGR03548 69 VSVENGIYYIGGSNS-SERFSSVYRITLDESKEELICETI---GNLPFTFENGSACYKDG-TLYVGGGNRNGKPSNKSYL 143 (323)
T ss_pred EEECCEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEc---CCCCcCccCceEEEECC-EEEEEeCcCCCccCceEEE
Confidence 999999999999854 34578999999998442 23454 68999999999988876 9999999866667899999
Q ss_pred EeCCCCCceEEEcCCCCCCC-CcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCC----CCCc
Q 004198 184 LDTAQKPYVWQRLNPEGDRP-SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGV----APSP 258 (769)
Q Consensus 184 ~d~~~~~~~W~~v~~~~~~P-~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~----~P~~ 258 (769)
||+.++ +|++++++ | .+|..|+++ ..+++||++||.+.. ...|++.||+.++ +|..++.+ .|..
T Consensus 144 yd~~~~--~W~~~~~~---p~~~r~~~~~~-~~~~~iYv~GG~~~~--~~~~~~~yd~~~~---~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 144 FNLETQ--EWFELPDF---PGEPRVQPVCV-KLQNELYVFGGGSNI--AYTDGYKYSPKKN---QWQKVADPTTDSEPIS 212 (323)
T ss_pred EcCCCC--CeeECCCC---CCCCCCcceEE-EECCEEEEEcCCCCc--cccceEEEecCCC---eeEECCCCCCCCCcee
Confidence 999999 99999765 3 357666665 457899999998643 3578999999977 77777643 2344
Q ss_pred ccceEEEE-eCCEEEEEecccCCCC----------------------------cccCCCcEEEEECCCCcEEeccCCccC
Q 004198 259 RYQHAAVF-VGARLHVTGGALRGGR----------------------------AIEGEAAVAVLDTAAGVWLDRNGLVTS 309 (769)
Q Consensus 259 R~~hs~~~-~~~~i~V~GG~~~~~~----------------------------~~~~~~~v~~yd~~t~~W~~~~~~~~~ 309 (769)
+..+++++ .+++|||+||.+.... .....+++++||+.+++|+.+..++.
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~- 291 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF- 291 (323)
T ss_pred ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc-
Confidence 44555444 4799999999864210 00113679999999999999986642
Q ss_pred CCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcCC
Q 004198 310 SRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG 348 (769)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~~ 348 (769)
.+|..+++++++++||++||...
T Consensus 292 ----------------~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 292 ----------------FARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred ----------------cccCchheEEECCEEEEEecccc
Confidence 28999999999999999999643
No 33
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.97 E-value=5.2e-32 Score=280.09 Aligned_cols=206 Identities=31% Similarity=0.564 Sum_probs=174.2
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeec----CCEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCC
Q 004198 553 FLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ 628 (769)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~e~~~l~~~----~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~ 628 (769)
.|....|..|+.+|+++|++-|++-++. ..|.||||+||+++||+-+|-+.|+|+... .|||-||+||||.
T Consensus 133 ~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlPS~~n-----pYvFNGDFVDRGk 207 (631)
T KOG0377|consen 133 RLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLPSSSN-----PYVFNGDFVDRGK 207 (631)
T ss_pred hccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCCCCCC-----CeeecCchhhccc
Confidence 4667789999999999999999998875 369999999999999999999999998764 7999999999999
Q ss_pred ChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhhccccceEEEeceEEEEcC
Q 004198 629 HSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHG 708 (769)
Q Consensus 629 ~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i~~~i~~vHg 708 (769)
+|+|+|++|+++-+-||..+|+-|||||+..+|..|||..|...||... +..+.+-+.++|.|||++.+++.+||.|||
T Consensus 208 ~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~-~k~Ilr~leevy~WLPi~tiid~~ilvvHG 286 (631)
T KOG0377|consen 208 RSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRH-GKRILRFLEEVYRWLPIGTIIDSRILVVHG 286 (631)
T ss_pred cchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhc-ccHHHHHHHHHHHhcchhhhcccceEEEec
Confidence 9999999999999999999999999999999999999999999999887 778888999999999999999999999999
Q ss_pred CCCCCCCChHHhhhccC---------CcccCC------------CccceeceeccCCCCC-----cccccCcceEEeehh
Q 004198 709 GIGRSIHSVEQIEKLER---------PITMDA------------GSIILMDLLWFVLNIS-----TILRSMVLYIILFSL 762 (769)
Q Consensus 709 Gi~~~~~~~~~i~~~~r---------p~~~~~------------~~~~~~dllWsdp~~~-----~~~~~~~~~~~~~~~ 762 (769)
|++.. +.++-+.+++| |++... +-+.+.|+|||||... ..+++.. --||+
T Consensus 287 GiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~~~~GC~pNt~RGgG---~yFGp 362 (631)
T KOG0377|consen 287 GISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQATMGCVPNTLRGGG---CYFGP 362 (631)
T ss_pred Ccccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcccccCCCcccccCCc---ceeCc
Confidence 99865 66777766655 222111 1145689999999653 3333333 34677
Q ss_pred hhhhhc
Q 004198 763 KIFISF 768 (769)
Q Consensus 763 ~~~~~~ 768 (769)
|+--.|
T Consensus 363 DvT~~~ 368 (631)
T KOG0377|consen 363 DVTDNF 368 (631)
T ss_pred hHHHHH
Confidence 765444
No 34
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.97 E-value=2.2e-29 Score=285.04 Aligned_cols=254 Identities=31% Similarity=0.468 Sum_probs=222.1
Q ss_pred CCCCCCcccccceEEEECCEEEEECccCCCCCCcC-cEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEe
Q 004198 92 PAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTD-DLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVS 170 (769)
Q Consensus 92 ~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~-dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~G 170 (769)
..+..|.+|+.|+++.+++++|||||.+......+ |+|+||..+ ..|......+..|.+|++|+++++++ +||+||
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~--~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lfG 129 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLES--QLWTKPAATGDEPSPRYGHSLSAVGD-KLYLFG 129 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCC--cccccccccCCCCCcccceeEEEECC-eEEEEc
Confidence 55677999999999999999999999865554444 799999999 77999999999999999999999996 999999
Q ss_pred cCCC-CCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEE
Q 004198 171 GNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWT 249 (769)
Q Consensus 171 G~~~-~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~ 249 (769)
|.+. ...++++++||+.++ +|..+.+.+.+|++|.+|+++++. .++|||||.+..+..++|+|.||+.+. +|.-.
T Consensus 130 G~~~~~~~~~~l~~~d~~t~--~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~-~W~~~ 205 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTR--TWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETS-TWSEL 205 (482)
T ss_pred cccCCCCChhheEeccCCCC--cEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccc-cceec
Confidence 9984 667899999999999 999999999999999999999875 799999999888778999999999866 47667
Q ss_pred eCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCCccCCCCCCCCCCCCCccCccccc
Q 004198 250 LAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRC 329 (769)
Q Consensus 250 ~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 329 (769)
...+..|.||++|++++++++++||||...+. ..++++|+||+.+.+|..+...... |.+|.
T Consensus 206 ~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~---~~l~D~~~ldl~~~~W~~~~~~g~~---------------p~~R~ 267 (482)
T KOG0379|consen 206 DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGD---VYLNDVHILDLSTWEWKLLPTGGDL---------------PSPRS 267 (482)
T ss_pred ccCCCCCCCCCCceEEEECCeEEEEeccccCC---ceecceEeeecccceeeeccccCCC---------------CCCcc
Confidence 77799999999999999999999999987332 2488999999999999977766543 66999
Q ss_pred ceEEEEeCCEEEEEcCcCCC-c-cccceEEecCCCCccccCCC
Q 004198 330 RHASASIGVRIYIYGGLKGD-I-LLDDFLVAENSPFQSDVNSP 370 (769)
Q Consensus 330 ~hs~~~~~~~iyv~GG~~~~-~-~~~D~~~ld~~~~~~~~~~~ 370 (769)
+|+++..+.+++|+||.... . .+.|+|.|+.++..+.....
T Consensus 268 ~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 268 GHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred eeeeEEECCEEEEEcCCcccccccccccccccccccceeeeec
Confidence 99999999999999999874 3 79999999999777665443
No 35
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=5.1e-29 Score=289.01 Aligned_cols=253 Identities=17% Similarity=0.196 Sum_probs=209.9
Q ss_pred CcccccceeecCCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEec
Q 004198 12 SYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIR 91 (769)
Q Consensus 12 ~y~~~~~~w~~~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~ 91 (769)
+|+..++.|....+.|. +..|+++++ +++||++||...... ..+++++||+.+++|..++
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~lyv~GG~~~~~~-------------~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 268 TNYSPLSEINTIIDIHY-VYCFGSVVL------NNVIYFIGGMNKNNL-------------SVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred ecchhhhhcccccCccc-cccceEEEE------CCEEEEECCCcCCCC-------------eeccEEEEeCCCCeeeECC
Confidence 57788888988876664 445688888 899999999864332 4679999999999999887
Q ss_pred CCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEec
Q 004198 92 PAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSG 171 (769)
Q Consensus 92 ~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG 171 (769)
.+ |.+|..|++++++++||++||.+ .....+++++||+.+ .+|+.+ .++|.+|++|+++.+++ .+|++||
T Consensus 328 ~~---~~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~--~~W~~~---~~lp~~r~~~~~~~~~~-~iYv~GG 397 (534)
T PHA03098 328 EL---IYPRKNPGVTVFNNRIYVIGGIY-NSISLNTVESWKPGE--SKWREE---PPLIFPRYNPCVVNVNN-LIYVIGG 397 (534)
T ss_pred CC---CcccccceEEEECCEEEEEeCCC-CCEecceEEEEcCCC--CceeeC---CCcCcCCccceEEEECC-EEEEECC
Confidence 54 68899999999999999999986 344678999999999 679988 58999999999988876 9999999
Q ss_pred CCC-CCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCC--cccceEEEecCCCCceEE
Q 004198 172 NDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGA--PLADAYGLLMHRNGQWEW 248 (769)
Q Consensus 172 ~~~-~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~--~l~d~~~ld~~~~~~W~W 248 (769)
... ...++++++||+.++ +|+.+.++ |.+|..|+++. .++++|++||.+.... .+++++.||+.++ +|
T Consensus 398 ~~~~~~~~~~v~~yd~~t~--~W~~~~~~---p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~---~W 468 (534)
T PHA03098 398 ISKNDELLKTVECFSLNTN--KWSKGSPL---PISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN---KW 468 (534)
T ss_pred cCCCCcccceEEEEeCCCC--eeeecCCC---CccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC---ce
Confidence 643 345789999999999 99998765 78888888765 5789999999865432 3677999999988 88
Q ss_pred EeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCCcc
Q 004198 249 TLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVT 308 (769)
Q Consensus 249 ~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 308 (769)
...+.. |.+|..|+++.++++|||+||..... ..+++++||+++++|+.+...|.
T Consensus 469 ~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 469 TELSSL-NFPRINASLCIFNNKIYVVGGDKYEY----YINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred eeCCCC-CcccccceEEEECCEEEEEcCCcCCc----ccceeEEEeCCCCEEEecCCCcc
Confidence 888755 68899999999999999999987543 25689999999999999987644
No 36
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=286.10 Aligned_cols=254 Identities=15% Similarity=0.224 Sum_probs=213.7
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCcc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~ 154 (769)
..+.+|+..+++|..+... | .+..|+++++++.||++||........+++++||+.+ ++|..+ +++|.+|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~---~~~~~~R~ 334 (534)
T PHA03098 264 YNYITNYSPLSEINTIIDI---H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT--KSWNKV---PELIYPRK 334 (534)
T ss_pred ceeeecchhhhhcccccCc---c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCC--CeeeEC---CCCCcccc
Confidence 3456788889999987532 2 3556799999999999999876666778999999999 779888 57899999
Q ss_pred ccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccc
Q 004198 155 GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLAD 234 (769)
Q Consensus 155 ~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d 234 (769)
+|+++++++ .+|++||.+.....+++++||+.++ +|+.++++ |.+|..|+++. .++++|++||.......+++
T Consensus 335 ~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l---p~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~ 407 (534)
T PHA03098 335 NPGVTVFNN-RIYVIGGIYNSISLNTVESWKPGES--KWREEPPL---IFPRYNPCVVN-VNNLIYVIGGISKNDELLKT 407 (534)
T ss_pred cceEEEECC-EEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCc---CcCCccceEEE-ECCEEEEECCcCCCCcccce
Confidence 999988876 9999999987778899999999999 99998766 78898888865 57899999998666556899
Q ss_pred eEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCCccCCCCCC
Q 004198 235 AYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSK 314 (769)
Q Consensus 235 ~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~ 314 (769)
++.||+.++ +|...+.. |.+|.+|+++.++++|||+||...... ....+.+++||+.+++|+.++.++.
T Consensus 408 v~~yd~~t~---~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~~~~W~~~~~~~~------ 476 (534)
T PHA03098 408 VECFSLNTN---KWSKGSPL-PISHYGGCAIYHDGKIYVIGGISYIDN-IKVYNIVESYNPVTNKWTELSSLNF------ 476 (534)
T ss_pred EEEEeCCCC---eeeecCCC-CccccCceEEEECCEEEEECCccCCCC-CcccceEEEecCCCCceeeCCCCCc------
Confidence 999999877 78887654 789999999999999999999764332 1124569999999999999987644
Q ss_pred CCCCCCCccCcccccceEEEEeCCEEEEEcCcCCCccccceEEecCCCCcccc
Q 004198 315 GHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDV 367 (769)
Q Consensus 315 ~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~~~~~~~D~~~ld~~~~~~~~ 367 (769)
+|..+++++++++|||+||.++....++++.+|..+.+|..
T Consensus 477 ------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 477 ------------PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTL 517 (534)
T ss_pred ------------ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEe
Confidence 88999999999999999999887778999999988877654
No 37
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=253.87 Aligned_cols=216 Identities=31% Similarity=0.525 Sum_probs=185.3
Q ss_pred CcccccceeecC--CCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEE
Q 004198 12 SYRTLETYWDTD--EDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTR 89 (769)
Q Consensus 12 ~y~~~~~~w~~~--~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~ 89 (769)
.|++.++.|+.+ +..|.||++|.+++++. +.+|||||.... |....+.-+.|+|.||+.+++|++
T Consensus 102 ~Yn~k~~eWkk~~spn~P~pRsshq~va~~s-----~~l~~fGGEfaS--------Pnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 102 SYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS-----NILWLFGGEFAS--------PNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred EEeccccceeEeccCCCcCCCccceeEEecc-----CeEEEeccccCC--------cchhhhhhhhheeeeeeccchhee
Confidence 589999999966 67789999999999953 499999997532 233344567899999999999999
Q ss_pred ecCCCCCCcccccceEEEECCEEEEECccC---CCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEE
Q 004198 90 IRPAGEPPSPRAAHAAAAVGTMVVFQGGIG---PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYL 166 (769)
Q Consensus 90 l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~---~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l 166 (769)
|...| -|+||++|-|++..+++++|||+- ..-.++||+|+||+.+ .+|.++.+.|..|.+|+||.+.+.-++.|
T Consensus 169 l~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdt--ykW~Klepsga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 169 LEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDT--YKWSKLEPSGAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred eccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccc--eeeeeccCCCCCCCCCCcceEEecCCCcE
Confidence 98776 679999999999999999999963 3345789999999999 99999999888999999999988866799
Q ss_pred EEEecCCC---------CCccCceeEEeCCCC---CceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCC-------
Q 004198 167 VSVSGNDG---------KRVLSDAWALDTAQK---PYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA------- 227 (769)
Q Consensus 167 ~v~GG~~~---------~~~~~dv~~~d~~~~---~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~------- 227 (769)
||+||+.. ....+|+|.++++.+ .|.|.++.+.+..|.||.+.+.++..|++-+.|||...
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEs 325 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEES 325 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchh
Confidence 99999853 336899999999763 48999999999999999999999999999999999854
Q ss_pred -CCCcccceEEEecCCC
Q 004198 228 -SGAPLADAYGLLMHRN 243 (769)
Q Consensus 228 -~~~~l~d~~~ld~~~~ 243 (769)
.+..+||+|.|+..++
T Consensus 326 l~g~F~NDLy~fdlt~n 342 (521)
T KOG1230|consen 326 LSGEFFNDLYFFDLTRN 342 (521)
T ss_pred hhhhhhhhhhheecccc
Confidence 1356899999998876
No 38
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.96 E-value=5.5e-27 Score=254.54 Aligned_cols=230 Identities=17% Similarity=0.246 Sum_probs=184.5
Q ss_pred eeecCCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEE-EecCCCCCC
Q 004198 19 YWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT-RIRPAGEPP 97 (769)
Q Consensus 19 ~w~~~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~-~l~~~g~~P 97 (769)
.|...+++|.||..|+++++ +++||++||..... ..+++++||+.+++|+ +......+|
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~------~~~lyviGG~~~~~--------------~~~~v~~~d~~~~~w~~~~~~~~~lp 111 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSV------ENGIYYIGGSNSSE--------------RFSSVYRITLDESKEELICETIGNLP 111 (323)
T ss_pred eEEEcccCCccccceEEEEE------CCEEEEEcCCCCCC--------------CceeEEEEEEcCCceeeeeeEcCCCC
Confidence 79999999999998888988 88999999976432 3689999999999983 222334468
Q ss_pred cccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCC-CCccccEEEEECCcEEEEEecCCCCC
Q 004198 98 SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP-GPRYGHVMDLVSQRYLVSVSGNDGKR 176 (769)
Q Consensus 98 ~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p-~~R~~hs~~~~~~~~l~v~GG~~~~~ 176 (769)
.+|..|++++++++||++||.. .....+++|+||+.+ .+|++++ ++| .+|..|+++++++ +|||+||.++..
T Consensus 112 ~~~~~~~~~~~~~~iYv~GG~~-~~~~~~~v~~yd~~~--~~W~~~~---~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~ 184 (323)
T TIGR03548 112 FTFENGSACYKDGTLYVGGGNR-NGKPSNKSYLFNLET--QEWFELP---DFPGEPRVQPVCVKLQN-ELYVFGGGSNIA 184 (323)
T ss_pred cCccCceEEEECCEEEEEeCcC-CCccCceEEEEcCCC--CCeeECC---CCCCCCCCcceEEEECC-EEEEEcCCCCcc
Confidence 8999999999999999999974 334579999999999 6799984 566 4788998877776 999999987543
Q ss_pred ccCceeEEeCCCCCceEEEcCCCCC--CCCcccccEEEEecCCEEEEEcccCCCC-------------------------
Q 004198 177 VLSDAWALDTAQKPYVWQRLNPEGD--RPSARMYATASARSDGMFLLCGGRDASG------------------------- 229 (769)
Q Consensus 177 ~~~dv~~~d~~~~~~~W~~v~~~~~--~P~~r~~hsa~~~~~g~l~v~GG~~~~~------------------------- 229 (769)
..++++||++++ +|+++.++.. .|..+..++++++.+++||++||.+...
T Consensus 185 -~~~~~~yd~~~~--~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (323)
T TIGR03548 185 -YTDGYKYSPKKN--QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFL 261 (323)
T ss_pred -ccceEEEecCCC--eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhC
Confidence 467999999999 9999987642 3444555666667788999999986421
Q ss_pred ------CcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCC
Q 004198 230 ------APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGG 281 (769)
Q Consensus 230 ------~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~ 281 (769)
...++++.||+.++ +|..++..+..+|..++++.++++|||+||....+
T Consensus 262 ~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 262 KPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred CCccccCcCceEEEEECCCC---eeeEcccccccccCchheEEECCEEEEEeccccCC
Confidence 01367999999988 88888765446899999999999999999976544
No 39
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=6e-26 Score=251.20 Aligned_cols=257 Identities=19% Similarity=0.287 Sum_probs=189.6
Q ss_pred Ccccc--cceeecCCCCC-CCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEE
Q 004198 12 SYRTL--ETYWDTDEDAP-GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT 88 (769)
Q Consensus 12 ~y~~~--~~~w~~~~~~P-~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~ 88 (769)
.||.. ++.|...+++| .+|.+|+++.+ +++||++||........ .....+++|+||+.+++|+
T Consensus 54 ~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~------~~~IYV~GG~~~~~~~~--------~~~~~~~v~~YD~~~n~W~ 119 (376)
T PRK14131 54 KLDLNAPSKGWTKIAAFPGGPREQAVAAFI------DGKLYVFGGIGKTNSEG--------SPQVFDDVYKYDPKTNSWQ 119 (376)
T ss_pred EEECCCCCCCeEECCcCCCCCcccceEEEE------CCEEEEEcCCCCCCCCC--------ceeEcccEEEEeCCCCEEE
Confidence 34543 57899999998 58999999999 89999999986411100 0014689999999999999
Q ss_pred EecCCCCCCcccccceEEE-ECCEEEEECccCCCC---------------------------------CCcCcEEEEEcc
Q 004198 89 RIRPAGEPPSPRAAHAAAA-VGTMVVFQGGIGPAG---------------------------------HSTDDLYVLDLT 134 (769)
Q Consensus 89 ~l~~~g~~P~~R~~hs~~~-~~~~Iyv~GG~~~~~---------------------------------~~~~dl~~~d~~ 134 (769)
+++.. .|.+|.+|++++ .+++||++||.+... ...+++++||+.
T Consensus 120 ~~~~~--~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~ 197 (376)
T PRK14131 120 KLDTR--SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPS 197 (376)
T ss_pred eCCCC--CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECC
Confidence 99752 467788888887 799999999975310 124789999999
Q ss_pred CCcceEEEeeecCCCCC-CccccEEEEECCcEEEEEecCCCCC-ccCceeE--EeCCCCCceEEEcCCCCCCCCccc---
Q 004198 135 NDKFKWHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWA--LDTAQKPYVWQRLNPEGDRPSARM--- 207 (769)
Q Consensus 135 t~~~~W~~~~~~g~~p~-~R~~hs~~~~~~~~l~v~GG~~~~~-~~~dv~~--~d~~~~~~~W~~v~~~~~~P~~r~--- 207 (769)
+ ++|..+ +++|. +|.+|+++.+++ +|||+||..... ...++|. ||++++ +|+++..+ |.+|.
T Consensus 198 t--~~W~~~---~~~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~--~W~~~~~~---p~~~~~~~ 266 (376)
T PRK14131 198 T--NQWKNA---GESPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNL--KWQKLPDL---PPAPGGSS 266 (376)
T ss_pred C--CeeeEC---CcCCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCc--ceeecCCC---CCCCcCCc
Confidence 9 779988 56775 788888877776 999999975432 3455665 456666 99999876 44432
Q ss_pred ----ccEEEEecCCEEEEEcccCCCCC-------------cc---cceEEEecCCCCceEEEeCCCCCCCcccceEEEEe
Q 004198 208 ----YATASARSDGMFLLCGGRDASGA-------------PL---ADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV 267 (769)
Q Consensus 208 ----~hsa~~~~~g~l~v~GG~~~~~~-------------~l---~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~ 267 (769)
.+.+++..+++||++||.+.... .+ ..+..||+.++ +|.....+ |.+|..|+++.+
T Consensus 267 ~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~l-p~~r~~~~av~~ 342 (376)
T PRK14131 267 QEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG---KWQKVGEL-PQGLAYGVSVSW 342 (376)
T ss_pred CCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC---cccccCcC-CCCccceEEEEe
Confidence 22334456889999999864211 01 23557888776 77777654 789999999999
Q ss_pred CCEEEEEecccCCCCcccCCCcEEEEECCCCcEEe
Q 004198 268 GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLD 302 (769)
Q Consensus 268 ~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~ 302 (769)
+++|||+||....+. ..+++++|+++.+.|+.
T Consensus 343 ~~~iyv~GG~~~~~~---~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 343 NNGVLLIGGETAGGK---AVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CCEEEEEcCCCCCCc---EeeeEEEEEEcCCEEEE
Confidence 999999999765432 36789999999888765
No 40
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=1.3e-25 Score=255.70 Aligned_cols=208 Identities=19% Similarity=0.251 Sum_probs=175.5
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCC
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~ 124 (769)
++.||++||..... ..+.+++||+.+++|..++++ |.+|..+++++++++||++||...
T Consensus 271 ~~~lyviGG~~~~~--------------~~~~v~~Ydp~~~~W~~~~~m---~~~r~~~~~v~~~~~iYviGG~~~---- 329 (480)
T PHA02790 271 GEVVYLIGGWMNNE--------------IHNNAIAVNYISNNWIPIPPM---NSPRLYASGVPANNKLYVVGGLPN---- 329 (480)
T ss_pred CCEEEEEcCCCCCC--------------cCCeEEEEECCCCEEEECCCC---CchhhcceEEEECCEEEEECCcCC----
Confidence 88999999975322 467899999999999999865 789999999999999999999742
Q ss_pred cCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCC
Q 004198 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (769)
Q Consensus 125 ~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~ 204 (769)
.+++++||+.+ ++|..+ .++|.+|.+|++++.++ +||++||.++. .+.+.+||+.++ +|+.++++ |.
T Consensus 330 ~~sve~ydp~~--n~W~~~---~~l~~~r~~~~~~~~~g-~IYviGG~~~~--~~~ve~ydp~~~--~W~~~~~m---~~ 396 (480)
T PHA02790 330 PTSVERWFHGD--AAWVNM---PSLLKPRCNPAVASINN-VIYVIGGHSET--DTTTEYLLPNHD--QWQFGPST---YY 396 (480)
T ss_pred CCceEEEECCC--CeEEEC---CCCCCCCcccEEEEECC-EEEEecCcCCC--CccEEEEeCCCC--EEEeCCCC---CC
Confidence 25689999988 779998 58999999999988886 99999998654 367999999999 99998876 78
Q ss_pred cccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcc
Q 004198 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (769)
Q Consensus 205 ~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~ 284 (769)
+|..|++++ .+++||++||. +..|++.++ +|...+.+ |.+|.++++++++++|||+||.....
T Consensus 397 ~r~~~~~~~-~~~~IYv~GG~---------~e~ydp~~~---~W~~~~~m-~~~r~~~~~~v~~~~IYviGG~~~~~--- 459 (480)
T PHA02790 397 PHYKSCALV-FGRRLFLVGRN---------AEFYCESSN---TWTLIDDP-IYPRDNPELIIVDNKLLLIGGFYRGS--- 459 (480)
T ss_pred ccccceEEE-ECCEEEEECCc---------eEEecCCCC---cEeEcCCC-CCCccccEEEEECCEEEEECCcCCCc---
Confidence 888887765 58899999984 356788777 88888765 78999999999999999999986432
Q ss_pred cCCCcEEEEECCCCcEEecc
Q 004198 285 EGEAAVAVLDTAAGVWLDRN 304 (769)
Q Consensus 285 ~~~~~v~~yd~~t~~W~~~~ 304 (769)
..+.+++||+++++|+...
T Consensus 460 -~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 460 -YIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred -ccceEEEEECCCCeEEecC
Confidence 2467999999999998754
No 41
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.94 E-value=2.2e-25 Score=244.48 Aligned_cols=247 Identities=20% Similarity=0.324 Sum_probs=181.8
Q ss_pred Cccc--ccceeecCCCCC-CCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEE
Q 004198 12 SYRT--LETYWDTDEDAP-GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT 88 (769)
Q Consensus 12 ~y~~--~~~~w~~~~~~P-~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~ 88 (769)
.||+ .++.|...+++| .+|.+|+++.+ +++||++||........ .....+++++||+.+++|+
T Consensus 33 ~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~------~~~iYv~GG~~~~~~~~--------~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 33 KLDLKKPSKGWQKIADFPGGPRNQAVAAAI------DGKLYVFGGIGKANSEG--------SPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred EEECCCCCCCceECCCCCCCCcccceEEEE------CCEEEEEeCCCCCCCCC--------cceecccEEEEECCCCEEe
Confidence 3553 578899999999 58999999999 89999999986432100 0014689999999999999
Q ss_pred EecCCCCCCcccccceEE-EECCEEEEECccCCCC---------------------------------CCcCcEEEEEcc
Q 004198 89 RIRPAGEPPSPRAAHAAA-AVGTMVVFQGGIGPAG---------------------------------HSTDDLYVLDLT 134 (769)
Q Consensus 89 ~l~~~g~~P~~R~~hs~~-~~~~~Iyv~GG~~~~~---------------------------------~~~~dl~~~d~~ 134 (769)
+++. ..|.+|.+|+++ +++++||++||..... ..++++++||+.
T Consensus 99 ~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~ 176 (346)
T TIGR03547 99 KLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPS 176 (346)
T ss_pred cCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECC
Confidence 9873 246678888777 6899999999975320 124789999999
Q ss_pred CCcceEEEeeecCCCCC-CccccEEEEECCcEEEEEecCCCCC-ccCceeEEeC--CCCCceEEEcCCCCCCCCcc----
Q 004198 135 NDKFKWHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWALDT--AQKPYVWQRLNPEGDRPSAR---- 206 (769)
Q Consensus 135 t~~~~W~~~~~~g~~p~-~R~~hs~~~~~~~~l~v~GG~~~~~-~~~dv~~~d~--~~~~~~W~~v~~~~~~P~~r---- 206 (769)
+ ++|+.+ +++|. +|.+|+++++++ +|||+||..... ...+++.|++ +++ +|+.+.++ |.+|
T Consensus 177 t--~~W~~~---~~~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~--~W~~~~~m---~~~r~~~~ 245 (346)
T TIGR03547 177 T--NQWRNL---GENPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKL--EWNKLPPL---PPPKSSSQ 245 (346)
T ss_pred C--CceeEC---ccCCCCcCCCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCc--eeeecCCC---CCCCCCcc
Confidence 9 779999 47775 788998888876 999999976433 2356777665 555 99999877 3333
Q ss_pred ---cccEEEEecCCEEEEEcccCCCCC----------------cccceEEEecCCCCceEEEeCCCCCCCcccceEEEEe
Q 004198 207 ---MYATASARSDGMFLLCGGRDASGA----------------PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV 267 (769)
Q Consensus 207 ---~~hsa~~~~~g~l~v~GG~~~~~~----------------~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~ 267 (769)
..|+++ ..+++||++||.+.... .+..+..|+..++ +|.....+ |.+|..++++.+
T Consensus 246 ~~~~~~~a~-~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~l-p~~~~~~~~~~~ 320 (346)
T TIGR03547 246 EGLAGAFAG-ISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG---KWSKVGKL-PQGLAYGVSVSW 320 (346)
T ss_pred ccccEEeee-EECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC---cccccCCC-CCCceeeEEEEc
Confidence 334344 46889999999863210 1234667777766 78888765 788999998889
Q ss_pred CCEEEEEecccCCCCcccCCCcEEEE
Q 004198 268 GARLHVTGGALRGGRAIEGEAAVAVL 293 (769)
Q Consensus 268 ~~~i~V~GG~~~~~~~~~~~~~v~~y 293 (769)
+++|||+||.+..+. ..++++.|
T Consensus 321 ~~~iyv~GG~~~~~~---~~~~v~~~ 343 (346)
T TIGR03547 321 NNGVLLIGGENSGGK---AVTDVYLL 343 (346)
T ss_pred CCEEEEEeccCCCCC---EeeeEEEE
Confidence 999999999865443 24566655
No 42
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.7e-26 Score=241.77 Aligned_cols=259 Identities=25% Similarity=0.412 Sum_probs=210.3
Q ss_pred Ccccccceee---cCCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEE
Q 004198 12 SYRTLETYWD---TDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT 88 (769)
Q Consensus 12 ~y~~~~~~w~---~~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~ 88 (769)
.||..+++|. ..+++|.+-..|..++. |.+||+|||..+... .++|+|.+.-..-.|+
T Consensus 61 vYNTatnqWf~PavrGDiPpgcAA~Gfvcd------GtrilvFGGMvEYGk-------------YsNdLYELQasRWeWk 121 (830)
T KOG4152|consen 61 VYNTATNQWFAPAVRGDIPPGCAAFGFVCD------GTRILVFGGMVEYGK-------------YSNDLYELQASRWEWK 121 (830)
T ss_pred hhccccceeecchhcCCCCCchhhcceEec------CceEEEEccEeeecc-------------ccchHHHhhhhhhhHh
Confidence 4899999997 45899999999999998 999999999987764 6899988777777888
Q ss_pred EecC----CCCCCcccccceEEEECCEEEEECccCCC--------CCCcCcEEEEEccC--CcceEEEeeecCCCCCCcc
Q 004198 89 RIRP----AGEPPSPRAAHAAAAVGTMVVFQGGIGPA--------GHSTDDLYVLDLTN--DKFKWHRVVVQGQGPGPRY 154 (769)
Q Consensus 89 ~l~~----~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~--------~~~~~dl~~~d~~t--~~~~W~~~~~~g~~p~~R~ 154 (769)
++.+ .|.+|-||-+|+...++++-|+|||...+ ..++||+|++++.- ..--|....+.|..|.+|.
T Consensus 122 rlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRE 201 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRE 201 (830)
T ss_pred hcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcc
Confidence 8854 46788999999999999999999997422 25689999999983 3456999999999999999
Q ss_pred ccEEEEE-----CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCC-
Q 004198 155 GHVMDLV-----SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS- 228 (769)
Q Consensus 155 ~hs~~~~-----~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~- 228 (769)
.|+++++ +..++||+||.++- .+.|+|.+|+++- .|.+....+-.|.||.-|+++.+.| +||||||+..-
T Consensus 202 SHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl--~W~kp~~~G~~PlPRSLHsa~~IGn-KMyvfGGWVPl~ 277 (830)
T KOG4152|consen 202 SHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTL--TWNKPSLSGVAPLPRSLHSATTIGN-KMYVFGGWVPLV 277 (830)
T ss_pred cceeEEEEeccCCcceEEEEcccccc-cccceeEEeccee--ecccccccCCCCCCcccccceeecc-eeEEecceeeee
Confidence 9999988 23489999999876 4899999999987 9999999999999999999998755 89999998321
Q ss_pred ------------CCcccceEEEecCCCCceEEEeCC------CCCCCcccceEEEEeCCEEEEEecccCCCCcc---cCC
Q 004198 229 ------------GAPLADAYGLLMHRNGQWEWTLAP------GVAPSPRYQHAAVFVGARLHVTGGALRGGRAI---EGE 287 (769)
Q Consensus 229 ------------~~~l~d~~~ld~~~~~~W~W~~~~------~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~---~~~ 287 (769)
+.-.+.+-.++.++. .|+.+- ...|.+|.+|+++.++.+||+-.|+++....- ...
T Consensus 278 ~~~~~~~~hekEWkCTssl~clNldt~---~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCC 354 (830)
T KOG4152|consen 278 MDDVKVATHEKEWKCTSSLACLNLDTM---AWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCC 354 (830)
T ss_pred ccccccccccceeeeccceeeeeecch---heeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccch
Confidence 123455666777766 565543 33689999999999999999999987533211 125
Q ss_pred CcEEEEECC
Q 004198 288 AAVAVLDTA 296 (769)
Q Consensus 288 ~~v~~yd~~ 296 (769)
.++|.+|++
T Consensus 355 kDlWyLdTe 363 (830)
T KOG4152|consen 355 KDLWYLDTE 363 (830)
T ss_pred hhhhhhccc
Confidence 677777764
No 43
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.94 E-value=3.5e-27 Score=251.85 Aligned_cols=201 Identities=33% Similarity=0.563 Sum_probs=174.5
Q ss_pred cCHHHHHHHHHHHHHHHhcCCceeeecCC----EEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCC
Q 004198 554 LDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH 629 (769)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~e~~~l~~~~~----i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~ 629 (769)
+...-...|++.+..+++++|+++++..| +.|+||+|||+.+++++|+..|.|+... .|+|-||+||||..
T Consensus 183 L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~-----~ylfngdfv~rgs~ 257 (476)
T KOG0376|consen 183 LPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN-----PYLFNGDFVDRGSW 257 (476)
T ss_pred cccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc-----cccccCceeeeccc
Confidence 44445668999999999999999998754 8999999999999999999999988753 89999999999999
Q ss_pred hHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhhccccceEEEeceEEEEcCC
Q 004198 630 SLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGG 709 (769)
Q Consensus 630 s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i~~~i~~vHgG 709 (769)
|.|++..+++.|+.+|+++|++|||||...++..|||..|+..+|.+ +.+..+.++|.+||++-+++++++.+|||
T Consensus 258 s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte----~~~~~f~~~f~~LPl~~~i~~~~~~~hgg 333 (476)
T KOG0376|consen 258 SVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTE----EMFNLFSEVFIWLPLAHLINNKVLVMHGG 333 (476)
T ss_pred ceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHH----HHHHhhhhhhccccchhhhcCceEEEecC
Confidence 99999999999999999999999999999999999999999999954 56777779999999999999999999999
Q ss_pred CC-CCCCChHHhhhccCCcccCCCccceeceeccCCCCCcccc-cCcceEEeehhhh
Q 004198 710 IG-RSIHSVEQIEKLERPITMDAGSIILMDLLWFVLNISTILR-SMVLYIILFSLKI 764 (769)
Q Consensus 710 i~-~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp~~~~~~~-~~~~~~~~~~~~~ 764 (769)
+. +.-.++++|++|.|+...++.+ .++|+|||||.+..-.. +-++-+.-||.|+
T Consensus 334 lf~~~~v~l~d~r~i~r~~~~~~~~-~~~~~lws~pq~~~g~s~S~r~~g~~fG~d~ 389 (476)
T KOG0376|consen 334 LFSPDGVTLEDFRNIDRFEQPPEEG-LMCELLWSDPQPANGRSPSKRGVGLQFGPDV 389 (476)
T ss_pred cCCCCCccHHHHHhhhhccCCcccc-cccccccCCCccccCCCccccCceeeeCCCc
Confidence 95 4457899999999995555555 99999999998754443 3356566666654
No 44
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=3.5e-24 Score=243.86 Aligned_cols=210 Identities=16% Similarity=0.277 Sum_probs=177.3
Q ss_pred EEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEE
Q 004198 105 AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWAL 184 (769)
Q Consensus 105 ~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~ 184 (769)
++..++.||++||.+. ....+++++||+.+ ++|..+ .++|.+|..++++++++ .||++||.++. +.+++|
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~--~~W~~~---~~m~~~r~~~~~v~~~~-~iYviGG~~~~---~sve~y 336 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYIS--NNWIPI---PPMNSPRLYASGVPANN-KLYVVGGLPNP---TSVERW 336 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCC--CEEEEC---CCCCchhhcceEEEECC-EEEEECCcCCC---CceEEE
Confidence 3458999999999753 34578899999999 779999 58999999999988876 99999997542 679999
Q ss_pred eCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEE
Q 004198 185 DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAA 264 (769)
Q Consensus 185 d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~ 264 (769)
|+.++ +|+.++++ |.+|..|++++ .+|+||++||.+.. .+.+..||+.++ +|...+.+ |.+|.+|++
T Consensus 337 dp~~n--~W~~~~~l---~~~r~~~~~~~-~~g~IYviGG~~~~---~~~ve~ydp~~~---~W~~~~~m-~~~r~~~~~ 403 (480)
T PHA02790 337 FHGDA--AWVNMPSL---LKPRCNPAVAS-INNVIYVIGGHSET---DTTTEYLLPNHD---QWQFGPST-YYPHYKSCA 403 (480)
T ss_pred ECCCC--eEEECCCC---CCCCcccEEEE-ECCEEEEecCcCCC---CccEEEEeCCCC---EEEeCCCC-CCccccceE
Confidence 99999 99999876 78888777765 58899999998543 367889999887 88888765 789999999
Q ss_pred EEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCCccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEc
Q 004198 265 VFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYG 344 (769)
Q Consensus 265 ~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~G 344 (769)
++++++|||+||. +.+||+++++|+.+++++. +|..+++++++++|||+|
T Consensus 404 ~~~~~~IYv~GG~------------~e~ydp~~~~W~~~~~m~~------------------~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 404 LVFGRRLFLVGRN------------AEFYCESSNTWTLIDDPIY------------------PRDNPELIIVDNKLLLIG 453 (480)
T ss_pred EEECCEEEEECCc------------eEEecCCCCcEeEcCCCCC------------------CccccEEEEECCEEEEEC
Confidence 9999999999982 5789999999999988854 899999999999999999
Q ss_pred CcCCCccccceEEecCCCCcccc
Q 004198 345 GLKGDILLDDFLVAENSPFQSDV 367 (769)
Q Consensus 345 G~~~~~~~~D~~~ld~~~~~~~~ 367 (769)
|.++...++.+.++|..+-+|..
T Consensus 454 G~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred CcCCCcccceEEEEECCCCeEEe
Confidence 99866667788888888776653
No 45
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.89 E-value=9.6e-23 Score=209.63 Aligned_cols=152 Identities=47% Similarity=0.739 Sum_probs=121.0
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhc
Q 004198 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINAL 663 (769)
Q Consensus 584 ~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~ 663 (769)
+|||||||++.+|.++|+.++..+.+ .+||||||||||+.+.+++.+++.++.. |.++++||||||.+.++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d------~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~ 73 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPND------KLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFL 73 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCC------EEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhh
Confidence 58999999999999999999886555 8999999999999999999999999887 8899999999999998887
Q ss_pred cCCHHHHH-----HHhCCCCchhhhHHHhHhhccccceEEEec-eEEEEcCCCCCCCCChHHhhhccCCcccCCCcccee
Q 004198 664 FGFRLECI-----ERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILM 737 (769)
Q Consensus 664 ~g~~~e~~-----~~~~~~~~~~~~~~~~~~f~~lP~~~~i~~-~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~ 737 (769)
.++..+.. ...........+..+.++|..||+++.++. +++|||||+.|.....+++. ..+ ..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~~-~~~~~~ 146 (225)
T cd00144 74 YGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EEP-EDQLPE 146 (225)
T ss_pred cCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cCc-ccccce
Confidence 76654321 111111244577788899999999999976 89999999999876555544 111 123678
Q ss_pred ceeccCCCCCcc
Q 004198 738 DLLWFVLNISTI 749 (769)
Q Consensus 738 dllWsdp~~~~~ 749 (769)
+++|++|.....
T Consensus 147 ~~lw~r~~~~~~ 158 (225)
T cd00144 147 DLLWSDPLELPG 158 (225)
T ss_pred eeeecCCCCCCC
Confidence 999999976443
No 46
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.85 E-value=4.1e-21 Score=199.21 Aligned_cols=131 Identities=22% Similarity=0.393 Sum_probs=98.6
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCC---CcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGD---ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~---~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
++.||||||||++.|.++|+.+++...++. ....++|||||||||||+|+|||.+|+++. .+.++++||||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 489999999999999999999887411100 001179999999999999999999999885 346899999999999
Q ss_pred hhhhccCC-------HHHHHHHhCCC---CchhhhHHHhHhhccccceEEEe-ceEEEEcCCCCCCC
Q 004198 659 DINALFGF-------RLECIERMGEN---DGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSI 714 (769)
Q Consensus 659 ~~~~~~g~-------~~e~~~~~~~~---~~~~~~~~~~~~f~~lP~~~~i~-~~i~~vHgGi~~~~ 714 (769)
.++...+- ..+....|... ....+++.+.++|+.||++..++ ++++|||||+.|..
T Consensus 80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~ 146 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDY 146 (245)
T ss_pred HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHh
Confidence 88765431 12333334321 12345677899999999998774 57999999998763
No 47
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.83 E-value=1.1e-20 Score=195.12 Aligned_cols=120 Identities=23% Similarity=0.413 Sum_probs=96.6
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhh
Q 004198 583 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINA 662 (769)
Q Consensus 583 i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~ 662 (769)
++||||||||+.+|.++|+.+++.+..+ .++||||||||||+|+|||.+|++++ .++++|+||||.+.++.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D-----~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~ 71 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKD-----RLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAV 71 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCC-----EEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHH
Confidence 5899999999999999999998764332 89999999999999999999999986 58999999999998887
Q ss_pred ccCCHH----HHHHHhCCCCchhhhHHHhHhhccccceEEEec-eEEEEcCCCCCCC
Q 004198 663 LFGFRL----ECIERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSI 714 (769)
Q Consensus 663 ~~g~~~----e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i~~-~i~~vHgGi~~~~ 714 (769)
.+|+.. +....+-. ....+.+.++++.+|++..+++ ++++|||||+|.+
T Consensus 72 ~~g~~~~~~~~t~~~~l~---~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w 125 (257)
T cd07422 72 AAGIKKPKKKDTLDDILN---APDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW 125 (257)
T ss_pred hcCccccccHhHHHHHHh---ccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCC
Confidence 666431 11111111 1223567899999999998864 7999999999986
No 48
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.83 E-value=2e-20 Score=193.01 Aligned_cols=120 Identities=26% Similarity=0.375 Sum_probs=97.6
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (769)
.++||||||||+++|.++|+++++.+..+ .++||||+|||||+|+|||.++++++ .++++|+||||.+.++
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D-----~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~ 72 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQD-----TLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLA 72 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCC-----EEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHH
Confidence 48999999999999999999998765432 79999999999999999999999874 5688999999999998
Q ss_pred hccCCH-----HHHHHHhCCCCchhhhHHHhHhhccccceEEEe-ceEEEEcCCCCCCC
Q 004198 662 ALFGFR-----LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSI 714 (769)
Q Consensus 662 ~~~g~~-----~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i~-~~i~~vHgGi~~~~ 714 (769)
..+|+. ++....+. ......+.++++.+|+....+ .++++|||||.|.+
T Consensus 73 ~~~g~~~~~~~d~l~~~l~----a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w 127 (279)
T TIGR00668 73 VFAGISRNKPKDRLDPLLE----APDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQW 127 (279)
T ss_pred HhcCCCccCchHHHHHHHH----ccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCC
Confidence 877752 22211121 123467889999999997664 46999999999986
No 49
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.83 E-value=2.6e-20 Score=192.28 Aligned_cols=130 Identities=23% Similarity=0.432 Sum_probs=98.7
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCC----CCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcch
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAG----DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~----~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
+|.||||||||+.+|+++|+.+++.+++. .....+++|||||||||++|.|||.+|++++.. .++++||||||.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE~ 79 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHDN 79 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcHH
Confidence 68999999999999999999998764320 000117999999999999999999999998754 579999999999
Q ss_pred hhhhhccCCH-------HHHHHHhCCCCchhhhHHHhHhhccccceEEEe-ceEEEEcCCCCCCC
Q 004198 658 ADINALFGFR-------LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSI 714 (769)
Q Consensus 658 ~~~~~~~g~~-------~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i~-~~i~~vHgGi~~~~ 714 (769)
+.++...+.. .+....|... ...+.+.+.++|+.||+...++ ++++|||||+.+.+
T Consensus 80 ~l~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~~ 143 (234)
T cd07423 80 KLYRKLQGRNVKITHGLEETVAQLEAE-SEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEEM 143 (234)
T ss_pred HHHHHhcCCCccccCcccchHHHHhhc-cHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChHh
Confidence 9887654311 1222333211 2345677889999999998875 47999999987653
No 50
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.82 E-value=5.3e-20 Score=187.88 Aligned_cols=125 Identities=22% Similarity=0.330 Sum_probs=93.1
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCC--CcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhh
Q 004198 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGD--ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (769)
Q Consensus 584 ~viGDiHG~~~~l~~~l~~~~~~~~~~~--~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (769)
+||||||||++.|.++|+.+++....+. .....+|||||||||||+|.|||.+|++++.. .++++|+||||.+.+.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHH
Confidence 6999999999999999999887532100 00118999999999999999999999998643 4899999999999876
Q ss_pred hccCC-H----------------HHHHHHhCCCCchhhhHHHhHhhccccceEEEeceEEEEcCCCCCC
Q 004198 662 ALFGF-R----------------LECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRS 713 (769)
Q Consensus 662 ~~~g~-~----------------~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i~~~i~~vHgGi~~~ 713 (769)
...+. . .+..+.+.. ....++.+.++|+.||++... ++++|||||+.+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~~~~ 145 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFRE--HSEEHKDWLEWFKTLPLFLDL-GGVRVVHACWDET 145 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhc--cchhHHHHHHHHhcCCcEEEE-CCEEEEECCcCHh
Confidence 54321 0 112222221 123457788999999999887 5799999998633
No 51
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.82 E-value=1.1e-19 Score=185.49 Aligned_cols=120 Identities=26% Similarity=0.363 Sum_probs=90.4
Q ss_pred CCEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhh
Q 004198 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (769)
Q Consensus 581 ~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (769)
.+++||||||||+..|+++|+.+++.+..+ +++||||||||||+|.|||.+|.+ .++++|+||||.+.+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D-----~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~~l 85 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRD-----LLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQMAL 85 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccC-----EEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHHHH
Confidence 379999999999999999999998763332 799999999999999999999975 368899999999998
Q ss_pred hhccCCHHHHHHHhCC-------CCchhhhHHHhHhhccccceEEEe---ceEEEEcCCCC
Q 004198 661 NALFGFRLECIERMGE-------NDGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 711 (769)
Q Consensus 661 ~~~~g~~~e~~~~~~~-------~~~~~~~~~~~~~f~~lP~~~~i~---~~i~~vHgGi~ 711 (769)
+...+.....+...+. ......+..+.++++.||+...++ +++++||||+.
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 7653321111111110 011223456668999999998764 57999999983
No 52
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.81 E-value=6.8e-20 Score=188.58 Aligned_cols=159 Identities=24% Similarity=0.312 Sum_probs=109.6
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCC-ceEEecCCcchhhh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPE-NVHLIRGNHEAADI 660 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~-~v~llrGNHE~~~~ 660 (769)
.+++||||||+++.|.++|+.+.............+|||||||||||+|.+|+.+|++++..+|. ++++||||||.+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 58999999999999999998765321100001126999999999999999999999999998876 68999999998876
Q ss_pred hhccCC---------H------------------------------------------------------HHHHHHhCCC
Q 004198 661 NALFGF---------R------------------------------------------------------LECIERMGEN 677 (769)
Q Consensus 661 ~~~~g~---------~------------------------------------------------------~e~~~~~~~~ 677 (769)
..+... . .+...-|+-.
T Consensus 83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~ 162 (304)
T cd07421 83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162 (304)
T ss_pred hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence 654321 1 0111111111
Q ss_pred Cchh-----hhHHHhHhhccccceEEEeceE-------------EEEcCCCCCCCCChHHhhhcc-CCcccCCCccceec
Q 004198 678 DGIW-----AWTRFNQLFNCLPLAALIEKKI-------------ICMHGGIGRSIHSVEQIEKLE-RPITMDAGSIILMD 738 (769)
Q Consensus 678 ~~~~-----~~~~~~~~f~~lP~~~~i~~~i-------------~~vHgGi~~~~~~~~~i~~~~-rp~~~~~~~~~~~d 738 (769)
.+.. +-....+|++.||.....+ .+ +|||||+.|.+.--+|.+.+. +-+.. .-.|
T Consensus 163 ~~~~~l~~avP~~H~~fl~~l~~~~~~~-~~~~~~~~g~~~~~lifVHAGlrPg~pLe~Q~~~L~~~d~~~-----p~~~ 236 (304)
T cd07421 163 HGSSDLIKAVPEEHKKFLRNLVWVHEED-DVCIETEEGLKHCKLIAVHAGLEKSNSVEEQLKLLRTKDTSI-----PKIA 236 (304)
T ss_pred cchHHHHHhCCHHHHHHHHhCCceEEeC-cccccccccccccceEEEEcccCCCCChHHhhhhhhcccccc-----cccc
Confidence 1101 1134678899999987764 35 999999999987777776653 21222 2348
Q ss_pred eeccCCCC
Q 004198 739 LLWFVLNI 746 (769)
Q Consensus 739 llWsdp~~ 746 (769)
+||.+...
T Consensus 237 ~l~~R~~f 244 (304)
T cd07421 237 PLSGRKNV 244 (304)
T ss_pred ccccchhh
Confidence 88888753
No 53
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.80 E-value=3.2e-19 Score=186.45 Aligned_cols=121 Identities=22% Similarity=0.412 Sum_probs=96.2
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (769)
.++||||||||+..|.++|+.+++.+..+ .++||||||||||+|+||+.+|+++. .++++|+||||.+.+.
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D-----~li~lGDlVdrGp~s~~vl~~l~~l~----~~~~~VlGNHD~~ll~ 72 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKD-----TLWLVGDLVNRGPDSLEVLRFVKSLG----DSAVTVLGNHDLHLLA 72 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCC-----EEEEeCCccCCCcCHHHHHHHHHhcC----CCeEEEecChhHHHHH
Confidence 38999999999999999999998754332 79999999999999999999999873 5799999999999888
Q ss_pred hccCCHH----HHHHHhCCCCchhhhHHHhHhhccccceEEE-eceEEEEcCCCCCCC
Q 004198 662 ALFGFRL----ECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRSI 714 (769)
Q Consensus 662 ~~~g~~~----e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i-~~~i~~vHgGi~~~~ 714 (769)
..+|+.. +....+-. ....+.+.++++.||+...+ ++++++||||+.|.+
T Consensus 73 ~~~g~~~~~~~~~l~~~l~---~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~ 127 (275)
T PRK00166 73 VAAGIKRNKKKDTLDPILE---APDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQW 127 (275)
T ss_pred hhcCCccccchhHHHHHHc---cccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCC
Confidence 7766431 11122211 12345678899999998876 468999999999986
No 54
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.79 E-value=1.6e-18 Score=175.74 Aligned_cols=149 Identities=27% Similarity=0.354 Sum_probs=105.6
Q ss_pred CCEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhh
Q 004198 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (769)
Q Consensus 581 ~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (769)
++++|||||||++.+|.++++..++.+..+ .++|+|||||||+++.|++.+|.. .++++|+||||.+.+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d-----~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~ 69 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARD-----RLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAI 69 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCC-----EEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHH
Confidence 368999999999999999999987643221 789999999999999999999875 378999999999988
Q ss_pred hhccC--CHHHHHHHhCCCC-----chhhhHHHhHhhccccceEEEe---ceEEEEcCCCCCCCCChHHhhhccCCcccC
Q 004198 661 NALFG--FRLECIERMGEND-----GIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIGRSIHSVEQIEKLERPITMD 730 (769)
Q Consensus 661 ~~~~g--~~~e~~~~~~~~~-----~~~~~~~~~~~f~~lP~~~~i~---~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~ 730 (769)
....+ ...+.+.+.+... ....++.+.++|+.||++..++ .+++|||||+.+.. ....+.. .+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~-~~~~~~~--~~~--- 143 (207)
T cd07424 70 DALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDD-WSDGVGA--VTL--- 143 (207)
T ss_pred hHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcch-hhhhhhc--ccc---
Confidence 87654 2233433333220 1114455788999999998875 47999999996542 1111110 111
Q ss_pred CCccceeceeccCCCCC
Q 004198 731 AGSIILMDLLWFVLNIS 747 (769)
Q Consensus 731 ~~~~~~~dllWsdp~~~ 747 (769)
......+++|++|...
T Consensus 144 -~~~~~~~~~w~~~~~~ 159 (207)
T cd07424 144 -RPEDIEELLWSRTRIQ 159 (207)
T ss_pred -Ccccceeeeeccchhh
Confidence 1124578999987643
No 55
>PHA02239 putative protein phosphatase
Probab=99.78 E-value=1.2e-18 Score=178.51 Aligned_cols=140 Identities=24% Similarity=0.378 Sum_probs=101.3
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCC--CCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~--~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~ 659 (769)
.+++||||||++..|.++++.+... +.+ .+||||||||||++|.+++.+|+.++. .+.++++|+||||.+.
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d------~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~ 74 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEE------TIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEF 74 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCC------EEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHH
Confidence 4799999999999999999987533 222 799999999999999999999998754 3568999999999987
Q ss_pred hhhccCCH--------------HHHHHHhCCCCc---------------------------hhhhHHHhHhhccccceEE
Q 004198 660 INALFGFR--------------LECIERMGENDG---------------------------IWAWTRFNQLFNCLPLAAL 698 (769)
Q Consensus 660 ~~~~~g~~--------------~e~~~~~~~~~~---------------------------~~~~~~~~~~f~~lP~~~~ 698 (769)
++...+.. .+.+..|+.... ...+..+.++++.||++..
T Consensus 75 l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~ 154 (235)
T PHA02239 75 YNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYK 154 (235)
T ss_pred HHHHhCchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEE
Confidence 76542111 122334432100 0122445668899999988
Q ss_pred EeceEEEEcCCCCCCCCChHHhhhccCCcccCCCccceeceeccCC
Q 004198 699 IEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWFVL 744 (769)
Q Consensus 699 i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdp 744 (769)
.+ +++|||||+.|.. |++. +...+++|.+.
T Consensus 155 ~~-~~ifVHAGi~p~~-----------~~~~----q~~~~llWiR~ 184 (235)
T PHA02239 155 ED-KYIFSHSGGVSWK-----------PVEE----QTIDQLIWSRD 184 (235)
T ss_pred EC-CEEEEeCCCCCCC-----------Chhh----CCHhHeEEecc
Confidence 85 6999999998762 2221 13468999986
No 56
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.74 E-value=9.2e-18 Score=170.93 Aligned_cols=120 Identities=25% Similarity=0.304 Sum_probs=87.3
Q ss_pred CCEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhh
Q 004198 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (769)
Q Consensus 581 ~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (769)
++++||||||||+..|+++|+.+.+.+..+ .++||||||||||+|.||+.+|.+ .++++||||||.+.+
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d-----~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~ 83 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETD-----LLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMAL 83 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCC-----EEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHH
Confidence 489999999999999999999987554332 789999999999999999999864 378999999999988
Q ss_pred hhccCCHHHHHHHhCCC-----C--chhhhHHHhHhhccccceEEEe---ceEEEEcCCCC
Q 004198 661 NALFGFRLECIERMGEN-----D--GIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 711 (769)
Q Consensus 661 ~~~~g~~~e~~~~~~~~-----~--~~~~~~~~~~~f~~lP~~~~i~---~~i~~vHgGi~ 711 (769)
+....-....+...+.. . .........++++.||+...+. .++++||||+.
T Consensus 84 ~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 84 DAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 76532111111111100 0 0112233456899999998764 46999999983
No 57
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.74 E-value=4.6e-18 Score=171.77 Aligned_cols=130 Identities=23% Similarity=0.408 Sum_probs=93.1
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCC--cceeEEEeccccCCCCChHHHHHHHHHhhhc---CCCceEEecCCcchh
Q 004198 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDI--TYIDYLFLGDYVDRGQHSLETITLLLALKIE---YPENVHLIRGNHEAA 658 (769)
Q Consensus 584 ~viGDiHG~~~~l~~~l~~~~~~~~~~~~--~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~---~p~~v~llrGNHE~~ 658 (769)
+||||||||+.+|.++|+..++...+..+ ....+||+||+||||+++.||+.+|+.|+.+ .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 58999999999999999998864321111 1128999999999999999999999999854 456899999999999
Q ss_pred hhhhccCCHH-HHHHHhCCC--Cchhhh---HHHhHhhccccceEEEeceEEEEcCCCCCCC
Q 004198 659 DINALFGFRL-ECIERMGEN--DGIWAW---TRFNQLFNCLPLAALIEKKIICMHGGIGRSI 714 (769)
Q Consensus 659 ~~~~~~g~~~-e~~~~~~~~--~~~~~~---~~~~~~f~~lP~~~~i~~~i~~vHgGi~~~~ 714 (769)
.++..+.+.. +....+... .....+ ..+.++++.||+...++ +++|||||++|.+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~~~~w 141 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGLGPLW 141 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCcHHHH
Confidence 9875443221 111111000 000111 24578899999999886 5999999996643
No 58
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=7.3e-16 Score=159.01 Aligned_cols=284 Identities=18% Similarity=0.224 Sum_probs=214.0
Q ss_pred ecCCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCC--CcEEEecCCCCCCc
Q 004198 21 DTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT--RKWTRIRPAGEPPS 98 (769)
Q Consensus 21 ~~~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~--~~W~~l~~~g~~P~ 98 (769)
...+++|.+-.+-+...+ ++.+||-=|.. -...|.+|+.. ..|+++... |-.
T Consensus 28 ~~lPdlPvg~KnG~Ga~i------g~~~YVGLGs~------------------G~afy~ldL~~~~k~W~~~a~F--pG~ 81 (381)
T COG3055 28 GQLPDLPVGFKNGAGALI------GDTVYVGLGSA------------------GTAFYVLDLKKPGKGWTKIADF--PGG 81 (381)
T ss_pred ccCCCCCcccccccccee------cceEEEEeccC------------------CccceehhhhcCCCCceEcccC--CCc
Confidence 467888999888888888 88999877732 35688888875 479999876 346
Q ss_pred ccccceEEEECCEEEEECccCCC----CCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCC
Q 004198 99 PRAAHAAAAVGTMVVFQGGIGPA----GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDG 174 (769)
Q Consensus 99 ~R~~hs~~~~~~~Iyv~GG~~~~----~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~ 174 (769)
+|....++.++++||||||.+.. ...++|+|+||+.+ ++|+++.+ ..|..-.+|+++...+..++++||.+.
T Consensus 82 ~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~--nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~ 157 (381)
T COG3055 82 ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPST--NSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQ 157 (381)
T ss_pred ccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCC--Chhheecc--ccccccccceeEecCCceEEEEccccH
Confidence 89999999999999999997633 24579999999999 77999985 567778999999999889999999641
Q ss_pred ----------------------------------CCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEE
Q 004198 175 ----------------------------------KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFL 220 (769)
Q Consensus 175 ----------------------------------~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~ 220 (769)
.....+|+.|++.++ .|+.+-.. |..-.+.+++++.++++.
T Consensus 158 ~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~W~~~G~~---pf~~~aGsa~~~~~n~~~ 232 (381)
T COG3055 158 NIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--QWRNLGEN---PFYGNAGSAVVIKGNKLT 232 (381)
T ss_pred HhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--hhhhcCcC---cccCccCcceeecCCeEE
Confidence 113567889999999 89887543 544445577778888888
Q ss_pred EEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccce---EEE---EeCCEEEEEecccCCCC------------
Q 004198 221 LCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQH---AAV---FVGARLHVTGGALRGGR------------ 282 (769)
Q Consensus 221 v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~h---s~~---~~~~~i~V~GG~~~~~~------------ 282 (769)
++-|.--.+.+...++.++...+ .-+|...+..++..-..+ +-+ ..++.++|.||.+-.+.
T Consensus 233 lInGEiKpGLRt~~~k~~~~~~~-~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH 311 (381)
T COG3055 233 LINGEIKPGLRTAEVKQADFGGD-NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAH 311 (381)
T ss_pred EEcceecCCccccceeEEEeccC-ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccc
Confidence 88888777777788888887633 457777765543333322 222 34788999999863221
Q ss_pred ---cccCCCcEEEEECCCCcEEeccCCccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcC-CCccccceEEe
Q 004198 283 ---AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK-GDILLDDFLVA 358 (769)
Q Consensus 283 ---~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~-~~~~~~D~~~l 358 (769)
......+|++|| .+.|+.+..++. .++...++..++.||++||-. +...+..++.+
T Consensus 312 ~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~------------------~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l 371 (381)
T COG3055 312 EGLSKSWNSEVYIFD--NGSWKIVGELPQ------------------GLAYGVSLSYNNKVLLIGGETSGGKATTRVYSL 371 (381)
T ss_pred cchhhhhhceEEEEc--CCceeeecccCC------------------CccceEEEecCCcEEEEccccCCCeeeeeEEEE
Confidence 112256788888 899999998855 889999999999999999965 44666777655
Q ss_pred cC
Q 004198 359 EN 360 (769)
Q Consensus 359 d~ 360 (769)
-.
T Consensus 372 ~~ 373 (381)
T COG3055 372 SW 373 (381)
T ss_pred EE
Confidence 43
No 59
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.71 E-value=2.6e-18 Score=181.74 Aligned_cols=315 Identities=17% Similarity=0.253 Sum_probs=217.4
Q ss_pred CCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccccce
Q 004198 25 DAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHA 104 (769)
Q Consensus 25 ~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs 104 (769)
.-|..|.||.|+..++ ++.||++||+++.+. ..|+|.|+...+.|..+...+..|-.|+.|-
T Consensus 256 ~~p~~RgGHQMV~~~~----~~CiYLYGGWdG~~~--------------l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQ----TECVYLYGGWDGTQD--------------LADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cCccccCcceEEEeCC----CcEEEEecCcccchh--------------HHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 4678899999999854 569999999998774 6899999999999999988888899999999
Q ss_pred EEEECC--EEEEECccCCC-----CCCcCcEEEEEccCCcceEEEeeec---CCCCCCccccEEEEECCc-EEEEEecCC
Q 004198 105 AAAVGT--MVVFQGGIGPA-----GHSTDDLYVLDLTNDKFKWHRVVVQ---GQGPGPRYGHVMDLVSQR-YLVSVSGND 173 (769)
Q Consensus 105 ~~~~~~--~Iyv~GG~~~~-----~~~~~dl~~~d~~t~~~~W~~~~~~---g~~p~~R~~hs~~~~~~~-~l~v~GG~~ 173 (769)
|+.... ++|+.|-.-+. ...-.|+|+||..+ +.|.-+.-. ...|...+.|.|++.+++ .+||+||..
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~--~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDT--NTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCC--ceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 999865 99999974222 13357999999999 679888642 247999999999988764 599999974
Q ss_pred C--C-CccCceeEEeCCCCCceEEEcCCCC-------CCCCcccccEEEEe-cCCEEEEEcccCCCCCcccceEEEecCC
Q 004198 174 G--K-RVLSDAWALDTAQKPYVWQRLNPEG-------DRPSARMYATASAR-SDGMFLLCGGRDASGAPLADAYGLLMHR 242 (769)
Q Consensus 174 ~--~-~~~~dv~~~d~~~~~~~W~~v~~~~-------~~P~~r~~hsa~~~-~~g~l~v~GG~~~~~~~l~d~~~ld~~~ 242 (769)
- . ..+..+|.||+... .|..+...- +--..|.+|++-.. .+.++|+|||.....+ ++=.+.|++..
T Consensus 396 ~~~~e~~f~GLYaf~~~~~--~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E-l~L~f~y~I~~ 472 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQ--TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE-LNLFFSYDIDS 472 (723)
T ss_pred ccCCCccccceEEEecCCc--cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE-Eeehhcceecc
Confidence 3 2 35788999999988 887664321 11246888888765 4569999999765533 44445554432
Q ss_pred CCceEE---Ee-CCCCCCCcccceEEEE--eCCEEEEEecccCCCCcc--cCCCcEEEEECCCCcEEeccCCccCCCC--
Q 004198 243 NGQWEW---TL-APGVAPSPRYQHAAVF--VGARLHVTGGALRGGRAI--EGEAAVAVLDTAAGVWLDRNGLVTSSRT-- 312 (769)
Q Consensus 243 ~~~W~W---~~-~~~~~P~~R~~hs~~~--~~~~i~V~GG~~~~~~~~--~~~~~v~~yd~~t~~W~~~~~~~~~~~~-- 312 (769)
.+.-.- ++ .+.+.|++-+...+.. -...|++.-|.+...... .-.+++|+|+..++.|.++..+..-+..
T Consensus 473 E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~d 552 (723)
T KOG2437|consen 473 EHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDND 552 (723)
T ss_pred ccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhccCC
Confidence 210000 00 1122233322222111 145677666654322111 1267899999999999988665432211
Q ss_pred ----CCCCCCCCCccCcccccceEEEEe--CCEEEEEcCcCCC-----ccccceEEecCCC
Q 004198 313 ----SKGHGEHDPSLELMRRCRHASASI--GVRIYIYGGLKGD-----ILLDDFLVAENSP 362 (769)
Q Consensus 313 ----~~~~~~~~~~~~~~~R~~hs~~~~--~~~iyv~GG~~~~-----~~~~D~~~ld~~~ 362 (769)
.....+.+...++.+|++|+.++. ..-+|.+||+.+. ..++|+|.++.-.
T Consensus 553 tvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~r 613 (723)
T KOG2437|consen 553 TVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKICR 613 (723)
T ss_pred ceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhcc
Confidence 111224456678899999987765 4568999999764 5678999877554
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.57 E-value=6.9e-14 Score=144.52 Aligned_cols=241 Identities=19% Similarity=0.319 Sum_probs=173.6
Q ss_pred cccceeecCCCCCC-CccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCC
Q 004198 15 TLETYWDTDEDAPG-PRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA 93 (769)
Q Consensus 15 ~~~~~w~~~~~~P~-~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~ 93 (769)
-....|+..+..|. +|.+..++++ +++||+|||....... ...+.+|+|+||+.+++|+++.+.
T Consensus 67 ~~~k~W~~~a~FpG~~rnqa~~a~~------~~kLyvFgG~Gk~~~~---------~~~~~nd~Y~y~p~~nsW~kl~t~ 131 (381)
T COG3055 67 KPGKGWTKIADFPGGARNQAVAAVI------GGKLYVFGGYGKSVSS---------SPQVFNDAYRYDPSTNSWHKLDTR 131 (381)
T ss_pred cCCCCceEcccCCCcccccchheee------CCeEEEeeccccCCCC---------CceEeeeeEEecCCCChhheeccc
Confidence 33467999999995 6999999999 9999999998765541 123789999999999999999876
Q ss_pred CCCCcccccceEEEECC-EEEEECccCCC---------------------------------CCCcCcEEEEEccCCcce
Q 004198 94 GEPPSPRAAHAAAAVGT-MVVFQGGIGPA---------------------------------GHSTDDLYVLDLTNDKFK 139 (769)
Q Consensus 94 g~~P~~R~~hs~~~~~~-~Iyv~GG~~~~---------------------------------~~~~~dl~~~d~~t~~~~ 139 (769)
.|....+++++..++ +||++||.+.. -....+++.|++.+ ++
T Consensus 132 --sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~--n~ 207 (381)
T COG3055 132 --SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPST--NQ 207 (381)
T ss_pred --cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccccccc--ch
Confidence 466688899999987 99999997421 01236789999999 77
Q ss_pred EEEeeecCCC-CCCccccEEEEECCcEEEEEecCCC-CCccCceeEEeCCCCCceEEEcCCCCCCCC---cccccEEEEe
Q 004198 140 WHRVVVQGQG-PGPRYGHVMDLVSQRYLVSVSGNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPS---ARMYATASAR 214 (769)
Q Consensus 140 W~~~~~~g~~-p~~R~~hs~~~~~~~~l~v~GG~~~-~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~---~r~~hsa~~~ 214 (769)
|..+ |.. -.+++|.+. +.+++.+.++-|.-. .-....++.++...+..+|.++.....+.. .....+....
T Consensus 208 W~~~---G~~pf~~~aGsa~-~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~ 283 (381)
T COG3055 208 WRNL---GENPFYGNAGSAV-VIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGK 283 (381)
T ss_pred hhhc---CcCcccCccCcce-eecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccce
Confidence 9988 644 456677444 666556666666533 334567788888777779999966522111 1111222234
Q ss_pred cCCEEEEEcccCCC------------------CCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEec
Q 004198 215 SDGMFLLCGGRDAS------------------GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGG 276 (769)
Q Consensus 215 ~~g~l~v~GG~~~~------------------~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG 276 (769)
.++.+++.||.+-. ..+.+++|.|+. + .|..+ +..|.++..-.++..++.||++||
T Consensus 284 s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~---g--~Wk~~-GeLp~~l~YG~s~~~nn~vl~IGG 357 (381)
T COG3055 284 SNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN---G--SWKIV-GELPQGLAYGVSLSYNNKVLLIGG 357 (381)
T ss_pred eCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC---C--ceeee-cccCCCccceEEEecCCcEEEEcc
Confidence 67788888886432 134678899983 3 55555 455778888888889999999999
Q ss_pred ccCCCCcc
Q 004198 277 ALRGGRAI 284 (769)
Q Consensus 277 ~~~~~~~~ 284 (769)
.+.++...
T Consensus 358 E~~~Gka~ 365 (381)
T COG3055 358 ETSGGKAT 365 (381)
T ss_pred ccCCCeee
Confidence 98877643
No 61
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.47 E-value=3.3e-14 Score=151.04 Aligned_cols=205 Identities=20% Similarity=0.336 Sum_probs=155.5
Q ss_pred ceEEEeeecC-------CCCCCccccEEEEEC-CcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCccccc
Q 004198 138 FKWHRVVVQG-------QGPGPRYGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYA 209 (769)
Q Consensus 138 ~~W~~~~~~g-------~~p~~R~~hs~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~h 209 (769)
.+|.+++... ..|..|.||.|+... ...+|++||++|.+.+.|.|.|+...+ .|+.+...+..|..|.+|
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN--QWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc--eeEEeecCCCCCcchhhh
Confidence 5798887543 579999999997653 349999999999999999999999988 999999888899999999
Q ss_pred EEEEe-cCCEEEEEcccCCCC-----CcccceEEEecCCCCceEEEeCC-----CCCCCcccceEEEEeCCE--EEEEec
Q 004198 210 TASAR-SDGMFLLCGGRDASG-----APLADAYGLLMHRNGQWEWTLAP-----GVAPSPRYQHAAVFVGAR--LHVTGG 276 (769)
Q Consensus 210 sa~~~-~~g~l~v~GG~~~~~-----~~l~d~~~ld~~~~~~W~W~~~~-----~~~P~~R~~hs~~~~~~~--i~V~GG 276 (769)
-++.. ...++|+.|-+-... ....|+|.||..++ .|.... ..-|..-+.|.+++.+.+ +|||||
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~---~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN---TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc---eeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 99964 345899999764332 23689999999977 666554 123678899999999776 999999
Q ss_pred ccCCCCcccCCCcEEEEECCCCcEEeccCCccCCCCCCCCCCCCCccCcccccceEEEEeC--CEEEEEcCcCCCccccc
Q 004198 277 ALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIG--VRIYIYGGLKGDILLDD 354 (769)
Q Consensus 277 ~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~--~~iyv~GG~~~~~~~~D 354 (769)
+.-... ......+++||+....|..+........+ ... --..|.+|++-... .++|+|||....+.++=
T Consensus 394 r~~~~~-e~~f~GLYaf~~~~~~w~~l~e~~~~~~~---vvE-----~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L 464 (723)
T KOG2437|consen 394 RILTCN-EPQFSGLYAFNCQCQTWKLLREDSCNAGP---VVE-----DIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNL 464 (723)
T ss_pred eeccCC-CccccceEEEecCCccHHHHHHHHhhcCc---chh-----HHHHHHHHHHHhcCCCCeEEeccCcccceEEee
Confidence 864432 12357899999999999987654321110 011 12378889887774 58999999887655543
Q ss_pred eE
Q 004198 355 FL 356 (769)
Q Consensus 355 ~~ 356 (769)
+.
T Consensus 465 ~f 466 (723)
T KOG2437|consen 465 FF 466 (723)
T ss_pred hh
Confidence 33
No 62
>PF13964 Kelch_6: Kelch motif
Probab=98.83 E-value=8.3e-09 Score=79.17 Aligned_cols=50 Identities=38% Similarity=0.778 Sum_probs=43.5
Q ss_pred CccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCccc
Q 004198 29 PRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPR 100 (769)
Q Consensus 29 ~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R 100 (769)
||.+|+++++ +++||||||...... .++++++||+.+++|++++++ |.||
T Consensus 1 pR~~~s~v~~------~~~iyv~GG~~~~~~-------------~~~~v~~yd~~t~~W~~~~~m---p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV------GGKIYVFGGYDNSGK-------------YSNDVERYDPETNTWEQLPPM---PTPR 50 (50)
T ss_pred CCccCEEEEE------CCEEEEECCCCCCCC-------------ccccEEEEcCCCCcEEECCCC---CCCC
Confidence 7999999999 999999999987522 689999999999999999865 6666
No 63
>PF13964 Kelch_6: Kelch motif
Probab=98.79 E-value=1.2e-08 Score=78.19 Aligned_cols=50 Identities=30% Similarity=0.548 Sum_probs=45.4
Q ss_pred ccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCc
Q 004198 99 PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (769)
Q Consensus 99 ~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R 153 (769)
||.+|++++++++|||+||.......++++++||+.+ .+|+++ +++|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~---~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPET--NTWEQL---PPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCC--CcEEEC---CCCCCCC
Confidence 6999999999999999999876577899999999999 779999 5899887
No 64
>PLN02772 guanylate kinase
Probab=98.77 E-value=3.6e-08 Score=106.68 Aligned_cols=88 Identities=17% Similarity=0.340 Sum_probs=76.4
Q ss_pred CCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccccceE
Q 004198 26 APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAA 105 (769)
Q Consensus 26 ~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~ 105 (769)
.+.|+..|+++.+ ++++|||||...... .++.+|+||..+++|...+..|.+|.||-+|++
T Consensus 21 ~~~~~~~~tav~i------gdk~yv~GG~~d~~~-------------~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa 81 (398)
T PLN02772 21 GVKPKNRETSVTI------GDKTYVIGGNHEGNT-------------LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSA 81 (398)
T ss_pred cCCCCCcceeEEE------CCEEEEEcccCCCcc-------------ccceEEEEECCCCcEecccccCCCCCCCCcceE
Confidence 3569999999999 999999999776321 478999999999999999999999999999999
Q ss_pred EEEC-CEEEEECccCCCCCCcCcEEEEEccC
Q 004198 106 AAVG-TMVVFQGGIGPAGHSTDDLYVLDLTN 135 (769)
Q Consensus 106 ~~~~-~~Iyv~GG~~~~~~~~~dl~~~d~~t 135 (769)
+.++ ++|+|+++.++. .+++|.+...|
T Consensus 82 ~v~~~~rilv~~~~~~~---~~~~w~l~~~t 109 (398)
T PLN02772 82 VVLNKDRILVIKKGSAP---DDSIWFLEVDT 109 (398)
T ss_pred EEECCceEEEEeCCCCC---ccceEEEEcCC
Confidence 9996 599999876544 38899999887
No 65
>PLN02772 guanylate kinase
Probab=98.76 E-value=3.7e-08 Score=106.56 Aligned_cols=89 Identities=17% Similarity=0.340 Sum_probs=78.8
Q ss_pred CcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCC
Q 004198 97 PSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR 176 (769)
Q Consensus 97 P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~ 176 (769)
+.|+..|+++.+++++||+||.+..+...+++|+||..+ ++|....+.|..|.+|.||+++++++.+|+|+++....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t--~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKIT--NNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCC--CcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC-
Confidence 468999999999999999999877666789999999999 88999999999999999999999988899998875554
Q ss_pred ccCceeEEeCCCC
Q 004198 177 VLSDAWALDTAQK 189 (769)
Q Consensus 177 ~~~dv~~~d~~~~ 189 (769)
-.++|.+.+.+.
T Consensus 99 -~~~~w~l~~~t~ 110 (398)
T PLN02772 99 -DDSIWFLEVDTP 110 (398)
T ss_pred -ccceEEEEcCCH
Confidence 378999988774
No 66
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.73 E-value=2.4e-08 Score=76.27 Aligned_cols=49 Identities=41% Similarity=0.783 Sum_probs=41.1
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccccceEEEE
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV 108 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~ 108 (769)
+++||||||....... ..+++|+||+.+++|+++ ++.|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~------------~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGT------------RLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCC------------EecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 5799999999852221 689999999999999988 557999999999874
No 67
>PRK09453 phosphodiesterase; Provisional
Probab=98.70 E-value=5.8e-08 Score=96.36 Aligned_cols=67 Identities=19% Similarity=0.330 Sum_probs=52.4
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCC--------hHHHHHHHHHhhhcCCCceEEecC
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH--------SLETITLLLALKIEYPENVHLIRG 653 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~--------s~e~l~ll~~lk~~~p~~v~llrG 653 (769)
++.|++|+||++.++.++++.+.....+ .++++||++|+|++ +.+++.+|..+ ...+++++|
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~~~~d------~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~G 71 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQSGAD------WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRG 71 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhcCCC------EEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEcc
Confidence 4889999999999999998877433333 78999999999873 46677766554 247999999
Q ss_pred Ccchh
Q 004198 654 NHEAA 658 (769)
Q Consensus 654 NHE~~ 658 (769)
|||..
T Consensus 72 NhD~~ 76 (182)
T PRK09453 72 NCDSE 76 (182)
T ss_pred CCcch
Confidence 99974
No 68
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.65 E-value=6.1e-08 Score=73.98 Aligned_cols=48 Identities=33% Similarity=0.719 Sum_probs=42.6
Q ss_pred CCEEEEECccC-CCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEE
Q 004198 109 GTMVVFQGGIG-PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 161 (769)
Q Consensus 109 ~~~Iyv~GG~~-~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~ 161 (769)
+++||||||.+ .....++|+|+||+.+ .+|+++ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~--~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDT--NTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCC--CEEEEC---CCCCCCccceEEEEC
Confidence 57899999987 5677899999999999 789999 789999999999764
No 69
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.58 E-value=1.2e-07 Score=91.44 Aligned_cols=77 Identities=29% Similarity=0.361 Sum_probs=55.6
Q ss_pred CEEEEccCCCCHHHH---HHHH-HHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHH--HHhhhcCCCceEEecCCc
Q 004198 582 PVKVFGDLHGQFGDL---MRLF-DEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLL--LALKIEYPENVHLIRGNH 655 (769)
Q Consensus 582 ~i~viGDiHG~~~~l---~~~l-~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll--~~lk~~~p~~v~llrGNH 655 (769)
+|.++||+|+..... .+.+ +.......+ -+|++||++|++..+.+..... ...+...+..+++++|||
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPD------FIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTS------EEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCC------EEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 389999999999987 3333 322222222 6888999999999988877665 555556678999999999
Q ss_pred chhhhhhcc
Q 004198 656 EAADINALF 664 (769)
Q Consensus 656 E~~~~~~~~ 664 (769)
|........
T Consensus 76 D~~~~~~~~ 84 (200)
T PF00149_consen 76 DYYSGNSFY 84 (200)
T ss_dssp SSHHHHHHH
T ss_pred ccceecccc
Confidence 998765443
No 70
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.56 E-value=1.6e-07 Score=71.60 Aligned_cols=48 Identities=33% Similarity=0.743 Sum_probs=39.9
Q ss_pred CccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCC
Q 004198 29 PRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA 93 (769)
Q Consensus 29 ~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~ 93 (769)
||.+|+++++ +++||+|||....... ...+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~------~~kiyv~GG~~~~~~~-----------~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVL------DGKIYVFGGYGTDNGG-----------SSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEE------CCEEEEECCcccCCCC-----------cccceeEEEECCCCEEeecCCC
Confidence 7999999999 9999999999222211 2689999999999999998865
No 71
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.55 E-value=3e-07 Score=88.68 Aligned_cols=86 Identities=27% Similarity=0.373 Sum_probs=63.2
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (769)
+|.+++|+||+...+.++++.+.. .+ .++++||++++++... ++ ....+++++||||....
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d------~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~~~- 61 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VD------LIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGEVD- 61 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CC------EEEECCccccccccch--------hh--cCCcEEEEeCCCCCcCC-
Confidence 378999999999999999998754 22 7899999999998765 11 22469999999997432
Q ss_pred hccCCHHHHHHHhCCCCchhhhHHHhHhhccccceEEEe---ceEEEEcCCCCCCC
Q 004198 662 ALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIGRSI 714 (769)
Q Consensus 662 ~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i~---~~i~~vHgGi~~~~ 714 (769)
+..+|....++ .+++++||...+..
T Consensus 62 ----------------------------~~~~p~~~~~~~~g~~i~v~Hg~~~~~~ 89 (155)
T cd00841 62 ----------------------------FPILPEEAVLEIGGKRIFLTHGHLYGVK 89 (155)
T ss_pred ----------------------------cccCCceEEEEECCEEEEEECCcccccc
Confidence 23455444432 37999999875543
No 72
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.54 E-value=1.1e-05 Score=81.79 Aligned_cols=183 Identities=14% Similarity=0.229 Sum_probs=109.6
Q ss_pred EEEEECccCCCCCCcCcEEEEEccCCc-c-----eEEEeeecCCCCCCccccEEEEE---CCcEEEEEecCCCC------
Q 004198 111 MVVFQGGIGPAGHSTDDLYVLDLTNDK-F-----KWHRVVVQGQGPGPRYGHVMDLV---SQRYLVSVSGNDGK------ 175 (769)
Q Consensus 111 ~Iyv~GG~~~~~~~~~dl~~~d~~t~~-~-----~W~~~~~~g~~p~~R~~hs~~~~---~~~~l~v~GG~~~~------ 175 (769)
..+|.||..++...++.+|++...+.. + ...+-...|+.|.+||||++.++ ++...++|||+...
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 667789999999999999999887643 2 23333446999999999999877 34478899997421
Q ss_pred --------CccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCC-CcccceEEEecCCCC--
Q 004198 176 --------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG-APLADAYGLLMHRNG-- 244 (769)
Q Consensus 176 --------~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~-~~l~d~~~ld~~~~~-- 244 (769)
.....|+.+|++-+ ..+. ...++.--.-.+|.+.+ .+..+|+.||..-.. .....++++.++--.
T Consensus 120 TenWNsVvDC~P~VfLiDleFG--C~ta-h~lpEl~dG~SFHvsla-r~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGS 195 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFG--CCTA-HTLPELQDGQSFHVSLA-RNDCVYILGGHSLESDSRPPRLYRLKVDLLLGS 195 (337)
T ss_pred hhhcceeccCCCeEEEEecccc--cccc-ccchhhcCCeEEEEEEe-cCceEEEEccEEccCCCCCCcEEEEEEeecCCC
Confidence 13445777888765 3322 22333334556677776 466999999985443 345667777654210
Q ss_pred -ceEEEeCCCCCCCcccceEEEEe----CCEEEEEecccCCCCcccC-------CCcEEEEECCCCcEEe
Q 004198 245 -QWEWTLAPGVAPSPRYQHAAVFV----GARLHVTGGALRGGRAIEG-------EAAVAVLDTAAGVWLD 302 (769)
Q Consensus 245 -~W~W~~~~~~~P~~R~~hs~~~~----~~~i~V~GG~~~~~~~~~~-------~~~v~~yd~~t~~W~~ 302 (769)
.-+.+.+ +. ....+.+++ .+..+|+||+......... .+.+.+--.++-+|+.
T Consensus 196 P~vsC~vl----~~-glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~Wt~ 260 (337)
T PF03089_consen 196 PAVSCTVL----QG-GLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPEWTG 260 (337)
T ss_pred ceeEEEEC----CC-CceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCCCCC
Confidence 0011111 11 122233332 4678899998654422222 3334444455666653
No 73
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.54 E-value=1.8e-07 Score=71.33 Aligned_cols=48 Identities=29% Similarity=0.477 Sum_probs=39.8
Q ss_pred cccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCC
Q 004198 258 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (769)
Q Consensus 258 ~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 306 (769)
+|++|++++++++|||+||+. ........+++++||+++++|+.++.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~-~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYG-TDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcc-cCCCCcccceeEEEECCCCEEeecCCC
Confidence 689999999999999999991 111233478999999999999998876
No 74
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.45 E-value=2e-07 Score=71.15 Aligned_cols=47 Identities=30% Similarity=0.678 Sum_probs=30.9
Q ss_pred ccccceEEEEC-CEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCC
Q 004198 99 PRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP 150 (769)
Q Consensus 99 ~R~~hs~~~~~-~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p 150 (769)
||++|+++.++ +.||||||.+..+..++|+|+||+.+ .+|+++ +++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~--~~W~~~---~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIET--NTWTRL---PSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTT--TEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCC--CEEEEC---CCCC
Confidence 69999999995 89999999987777899999999999 789999 4555
No 75
>PF13854 Kelch_5: Kelch motif
Probab=98.41 E-value=4.7e-07 Score=66.57 Aligned_cols=40 Identities=43% Similarity=0.696 Sum_probs=36.3
Q ss_pred CCcccccceEEEECCEEEEECccC-CCCCCcCcEEEEEccC
Q 004198 96 PPSPRAAHAAAAVGTMVVFQGGIG-PAGHSTDDLYVLDLTN 135 (769)
Q Consensus 96 ~P~~R~~hs~~~~~~~Iyv~GG~~-~~~~~~~dl~~~d~~t 135 (769)
+|.+|++|+++.++++|||+||.. .....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 478999999999999999999987 4777899999999976
No 76
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.40 E-value=8.3e-07 Score=90.56 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=72.0
Q ss_pred CEEEEccCCCCHHHHH-HHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhh
Q 004198 582 PVKVFGDLHGQFGDLM-RLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~-~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (769)
.|.++|||||++.... +.++..+ + + .+|++||+++. +++++..|..+ +..+++++||||....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~~--p-D------~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLLQ--P-D------LVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYD 65 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhccC--C-C------EEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCccccc
Confidence 3899999999987642 3444332 2 2 68999999864 56777776654 2468999999997553
Q ss_pred hhc---cCCH------------------------------------------HHHHHHhCCCCchhhhHHHhHhhccccc
Q 004198 661 NAL---FGFR------------------------------------------LECIERMGENDGIWAWTRFNQLFNCLPL 695 (769)
Q Consensus 661 ~~~---~g~~------------------------------------------~e~~~~~~~~~~~~~~~~~~~~f~~lP~ 695 (769)
... +... .++...|+ ....++.+..+++.++.
T Consensus 66 ~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fg---i~s~~eA~~~ive~~~~ 142 (238)
T cd07397 66 ATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYG---VISLEESAQRIIAAAKK 142 (238)
T ss_pred ccccchHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhC---CCCHHHHHHHHHHHhhh
Confidence 210 0001 14444454 22344566677777764
Q ss_pred eEEEeceEEEEcCCCCCC
Q 004198 696 AALIEKKIICMHGGIGRS 713 (769)
Q Consensus 696 ~~~i~~~i~~vHgGi~~~ 713 (769)
+...+..||+.|+++...
T Consensus 143 ~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 143 APPDLPLILLAHNGPSGL 160 (238)
T ss_pred cCCCCCeEEEeCcCCcCC
Confidence 444445799999999654
No 77
>PF13854 Kelch_5: Kelch motif
Probab=98.38 E-value=5.4e-07 Score=66.25 Aligned_cols=39 Identities=31% Similarity=0.611 Sum_probs=35.3
Q ss_pred cccccceEEEEeCCEEEEEcCcCC--CccccceEEecCCCC
Q 004198 325 LMRRCRHASASIGVRIYIYGGLKG--DILLDDFLVAENSPF 363 (769)
Q Consensus 325 ~~~R~~hs~~~~~~~iyv~GG~~~--~~~~~D~~~ld~~~~ 363 (769)
|.+|.+|++++++++||||||..+ ...++|+|+||+.++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 569999999999999999999994 688999999998763
No 78
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.38 E-value=4e-07 Score=68.73 Aligned_cols=44 Identities=30% Similarity=0.527 Sum_probs=40.2
Q ss_pred ccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEee
Q 004198 99 PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVV 144 (769)
Q Consensus 99 ~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~ 144 (769)
||+.|++++++++||++||.......++++++||+.+ .+|++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPET--NTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTT--TEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCC--CEEEEcC
Confidence 6999999999999999999987788899999999999 7799995
No 79
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.37 E-value=3.6e-07 Score=69.72 Aligned_cols=46 Identities=30% Similarity=0.647 Sum_probs=30.6
Q ss_pred CccccEEEEECCcEEEEEecCCCC-CccCceeEEeCCCCCceEEEcCCC
Q 004198 152 PRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWALDTAQKPYVWQRLNPE 199 (769)
Q Consensus 152 ~R~~hs~~~~~~~~l~v~GG~~~~-~~~~dv~~~d~~~~~~~W~~v~~~ 199 (769)
||++|+++.+.++.+|||||.+.. ..++|+|+||++++ +|+++.++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECCCC
Confidence 699999999976799999999876 69999999999999 99999543
No 80
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.37 E-value=1.5e-06 Score=84.21 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=46.3
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCC-CCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcch
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~-~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
.+.|++|+||++.++..+++..... ..+ .++++||++ +.+++.++..+. ..++.++||||.
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~ 63 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVD------LVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDG 63 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCC------EEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCc
Confidence 3889999999998777666655433 222 688899999 467777776543 359999999997
No 81
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.37 E-value=5.7e-07 Score=67.86 Aligned_cols=46 Identities=33% Similarity=0.522 Sum_probs=39.8
Q ss_pred cccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCC
Q 004198 258 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (769)
Q Consensus 258 ~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 306 (769)
||.+|++++++++|||+||..... ...+++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN---QPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS---SBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccC---ceeeeEEEEeCCCCEEEEcCCC
Confidence 689999999999999999988722 2478899999999999998876
No 82
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.25 E-value=3.2e-06 Score=81.18 Aligned_cols=60 Identities=30% Similarity=0.495 Sum_probs=44.1
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~ 659 (769)
+|.++||+|++...+.++++.+. ..+ .++++||++|+ .+++.++..+ .+++++||||...
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~--~~d------~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYIN--EPD------FVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHT--TES------EEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTH
T ss_pred EEEEEeCCCCChhHHHHHHHHhc--CCC------EEEECCCchhH----HHHHHHHhcC------CEEEEeCCccccc
Confidence 38899999999999999999982 122 67889999993 7777777655 6999999999654
No 83
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.12 E-value=6.7e-06 Score=83.78 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=55.3
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
.|.+++||||++..|.++++.......+ .+|++||++++|+..-++..++..+... +..+++++||||..
T Consensus 6 kIl~iSDiHgn~~~le~l~~~~~~~~~D------~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~ 75 (224)
T cd07388 6 YVLATSNPKGDLEALEKLVGLAPETGAD------AIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP 75 (224)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhhcCCC------EEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence 4899999999999999999876432223 6889999999998777777777666432 34799999999975
No 84
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.08 E-value=0.00013 Score=74.92 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=100.0
Q ss_pred EEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCC--CCceEEEcCCCCCCCCc
Q 004198 128 LYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQ--KPYVWQRLNPEGDRPSA 205 (769)
Q Consensus 128 l~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~--~~~~W~~v~~~~~~P~~ 205 (769)
-..||+.+ ++++.+.+ +.--+..+.++..++.+++.||.... ...+-.|++.. ..-.|...... +-.+
T Consensus 48 s~~yD~~t--n~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~--m~~~ 117 (243)
T PF07250_consen 48 SVEYDPNT--NTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPND--MQSG 117 (243)
T ss_pred EEEEecCC--CcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECccc--ccCC
Confidence 45789988 66888743 33333334445667789999998552 24566677654 11168776542 4678
Q ss_pred ccccEEEEecCCEEEEEcccCCCCCcccceEEEecC---CCCceEEEeCC---CCCCCcccceEEEEeCCEEEEEecccC
Q 004198 206 RMYATASARSDGMFLLCGGRDASGAPLADAYGLLMH---RNGQWEWTLAP---GVAPSPRYQHAAVFVGARLHVTGGALR 279 (769)
Q Consensus 206 r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~---~~~~W~W~~~~---~~~P~~R~~hs~~~~~~~i~V~GG~~~ 279 (769)
|.|.++....||.++|+||.... .+.|... ....+.|.... ...+..-|-+....-+++||+++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-- 189 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-- 189 (243)
T ss_pred CccccceECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--
Confidence 99999999999999999998732 2233222 11222332221 1224455666777779999999873
Q ss_pred CCCcccCCCcEEEEECCCCcE-EeccCCcc
Q 004198 280 GGRAIEGEAAVAVLDTAAGVW-LDRNGLVT 308 (769)
Q Consensus 280 ~~~~~~~~~~v~~yd~~t~~W-~~~~~~~~ 308 (769)
.-.+||..++++ +.++.++.
T Consensus 190 ---------~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 190 ---------GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred ---------CcEEEeCCCCeEEeeCCCCCC
Confidence 357899999977 77777765
No 85
>smart00612 Kelch Kelch domain.
Probab=98.00 E-value=7.9e-06 Score=61.18 Aligned_cols=47 Identities=32% Similarity=0.613 Sum_probs=38.7
Q ss_pred EEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccccceEEEECC
Q 004198 47 RLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGT 110 (769)
Q Consensus 47 ~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~ 110 (769)
+||++||..... .++++++||+.+++|+.++++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~--------------~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ--------------RLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc--------------eeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 489999986421 578999999999999988754 78999999988764
No 86
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=97.95 E-value=1.5e-05 Score=74.96 Aligned_cols=60 Identities=23% Similarity=0.396 Sum_probs=39.5
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChH--HHHHHHHHhhhcCCCceEEecCCcchh
Q 004198 583 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL--ETITLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 583 i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~--e~l~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
|.+++|+||++. .+ .....+ -++++||+++++...- +.+.++..++ .| .++++.||||..
T Consensus 2 i~~isD~H~~~~----~~---~~~~~D------~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~ 63 (135)
T cd07379 2 FVCISDTHSRHR----TI---SIPDGD------VLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLT 63 (135)
T ss_pred EEEEeCCCCCCC----cC---cCCCCC------EEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCc
Confidence 789999999987 11 112222 5788999999986432 3445554442 22 367899999953
No 87
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=97.90 E-value=3.9e-05 Score=70.38 Aligned_cols=67 Identities=28% Similarity=0.384 Sum_probs=48.1
Q ss_pred EEEccCCCCHHHHHHHH--HHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcc
Q 004198 584 KVFGDLHGQFGDLMRLF--DEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 656 (769)
Q Consensus 584 ~viGDiHG~~~~l~~~l--~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE 656 (769)
+++||+|+......... ........+ .+|++||+++.+....+........+......++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~------~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPD------FVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCC------EEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce
Confidence 47899999998887764 222111112 68889999999988777665533334455678999999999
No 88
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=97.86 E-value=6.4e-05 Score=74.21 Aligned_cols=57 Identities=28% Similarity=0.468 Sum_probs=41.2
Q ss_pred EEEEccCC-CCHH-----HHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcc
Q 004198 583 VKVFGDLH-GQFG-----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 656 (769)
Q Consensus 583 i~viGDiH-G~~~-----~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE 656 (769)
|.||+|+| |.-. .+.++++. ...+ .++++||+++ .+++.+|..++ ..++.++||||
T Consensus 2 i~viSDtHl~~~~~~~~~~~~~~~~~---~~~d------~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D 63 (178)
T cd07394 2 VLVIGDLHIPHRASDLPAKFKKLLVP---GKIQ------HVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFD 63 (178)
T ss_pred EEEEEecCCCCCchhhHHHHHHHhcc---CCCC------EEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCC
Confidence 78999999 6543 35555544 1122 6888999987 77888776653 26999999999
Q ss_pred h
Q 004198 657 A 657 (769)
Q Consensus 657 ~ 657 (769)
.
T Consensus 64 ~ 64 (178)
T cd07394 64 E 64 (178)
T ss_pred c
Confidence 6
No 89
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.83 E-value=0.0012 Score=67.87 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=98.9
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccC--CcceEEEeeecCCCCC
Q 004198 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTN--DKFKWHRVVVQGQGPG 151 (769)
Q Consensus 74 ~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t--~~~~W~~~~~~g~~p~ 151 (769)
...-..||+.+++++.+...-+. -.++|+.. -++.+++.||...+ .+.+-.|++.+ ....|.+.. ..+..
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~--FCSgg~~L-~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~--~~m~~ 116 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDT--FCSGGAFL-PDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP--NDMQS 116 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCC--cccCcCCC-CCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc--ccccC
Confidence 34456699999999988754211 23333322 35688899997542 34566777653 224588875 35899
Q ss_pred CccccEEEEECCcEEEEEecCCCCCccCceeEEeCC---CCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCC
Q 004198 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTA---QKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS 228 (769)
Q Consensus 152 ~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~---~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~ 228 (769)
+|...++..+.++.++|+||.... ..+.+... ...+.|..+......-..-.|..+.+..+|+||+++..
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--- 189 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--- 189 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCC----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---
Confidence 999999999999999999998732 12222221 12234433332211122334556667789999999864
Q ss_pred CCcccceEEEecCCCCceEE-EeCCCCCCCcc
Q 004198 229 GAPLADAYGLLMHRNGQWEW-TLAPGVAPSPR 259 (769)
Q Consensus 229 ~~~l~d~~~ld~~~~~~W~W-~~~~~~~P~~R 259 (769)
+...||...+ ++ ...+..+-.+|
T Consensus 190 -----~s~i~d~~~n---~v~~~lP~lPg~~R 213 (243)
T PF07250_consen 190 -----GSIIYDYKTN---TVVRTLPDLPGGPR 213 (243)
T ss_pred -----CcEEEeCCCC---eEEeeCCCCCCCce
Confidence 3445666655 44 44554443344
No 90
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.80 E-value=0.0096 Score=60.95 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=102.1
Q ss_pred CCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCc--------EEEecCCCCCC
Q 004198 26 APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRK--------WTRIRPAGEPP 97 (769)
Q Consensus 26 ~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~--------W~~l~~~g~~P 97 (769)
+|+.|+-..+.............++-||.+.... .++.+|++.+.+.. .+.-.-.|+.|
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE-------------lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP 85 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE-------------LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVP 85 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc-------------cccceEEEEeecCCCCceeEEEEecceecCCCC
Confidence 5777766555553333333345566688887664 67889998877543 22334568999
Q ss_pred cccccceEEEEC----CEEEEECccC--CCCC-----------CcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEE
Q 004198 98 SPRAAHAAAAVG----TMVVFQGGIG--PAGH-----------STDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDL 160 (769)
Q Consensus 98 ~~R~~hs~~~~~----~~Iyv~GG~~--~~~~-----------~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~ 160 (769)
.+|++|++-++- ..+++|||.+ +.+. ..-.+|.+|++-. ...... -..+.-.-.-|.+..
T Consensus 86 ~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFG--C~tah~-lpEl~dG~SFHvsla 162 (337)
T PF03089_consen 86 EARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFG--CCTAHT-LPELQDGQSFHVSLA 162 (337)
T ss_pred cccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccc--cccccc-chhhcCCeEEEEEEe
Confidence 999999998872 3899999975 2221 2245777787752 222221 023444445555534
Q ss_pred ECCcEEEEEecCCCC--CccCceeEEeCCC--CCceEEEcCCCCCCCCcccccEEEE--ecCCEEEEEcccCCCC
Q 004198 161 VSQRYLVSVSGNDGK--RVLSDAWALDTAQ--KPYVWQRLNPEGDRPSARMYATASA--RSDGMFLLCGGRDASG 229 (769)
Q Consensus 161 ~~~~~l~v~GG~~~~--~~~~dv~~~d~~~--~~~~W~~v~~~~~~P~~r~~hsa~~--~~~g~l~v~GG~~~~~ 229 (769)
.+..+|++||..-. ..-..++++.++- .. -+-..... +......+|.+ .....++|.||+..+.
T Consensus 163 -r~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGS-P~vsC~vl---~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 163 -RNDCVYILGGHSLESDSRPPRLYRLKVDLLLGS-PAVSCTVL---QGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred -cCceEEEEccEEccCCCCCCcEEEEEEeecCCC-ceeEEEEC---CCCceEeeeeEeecCCCceEEEecccccc
Confidence 44499999997432 2334555544321 10 01111111 11222233332 2345788899996654
No 91
>smart00612 Kelch Kelch domain.
Probab=97.78 E-value=4.2e-05 Score=57.16 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=38.6
Q ss_pred EEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEe
Q 004198 165 YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASAR 214 (769)
Q Consensus 165 ~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~ 214 (769)
+||++||.+....++++++||+.++ +|+.++++ |.+|..|++++.
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~---~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETN--KWTPLPSM---PTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCC--eEccCCCC---CCccccceEEEe
Confidence 3899999887778899999999999 99998865 788988887754
No 92
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.74 E-value=5.3e-05 Score=75.15 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=44.8
Q ss_pred EEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCCh-HHHHHHHHHhhhcCCCceEEecCCcchhhh
Q 004198 583 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-LETITLLLALKIEYPENVHLIRGNHEAADI 660 (769)
Q Consensus 583 i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s-~e~l~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (769)
|.++|||||++..+.+ ........+ -+|+.||++++|... .+.+..|.. .+..++++.||||....
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D------~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~~ 67 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEAD------AVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPEI 67 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCC------EEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHHH
Confidence 5789999999998876 222211112 688899999998763 333333333 24569999999997644
No 93
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.53 E-value=0.073 Score=59.51 Aligned_cols=229 Identities=18% Similarity=0.218 Sum_probs=128.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCc--EEEecCCCCCC-----cccccceEEEECCEEEEECc
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRK--WTRIRPAGEPP-----SPRAAHAAAAVGTMVVFQGG 117 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~--W~~l~~~g~~P-----~~R~~hs~~~~~~~Iyv~GG 117 (769)
++++|+.+. .+.+++||..+++ |+.-....... .++...+.+..++.||+.+.
T Consensus 69 ~~~vy~~~~--------------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~ 128 (394)
T PRK11138 69 YNKVYAADR--------------------AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE 128 (394)
T ss_pred CCEEEEECC--------------------CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC
Confidence 789998654 2468999998765 98543220000 11233345666889988543
Q ss_pred cCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcC
Q 004198 118 IGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLN 197 (769)
Q Consensus 118 ~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~ 197 (769)
...+++||..+.+..|+.-.. + .. .+..++.+..+|+..+ ...++.||.++....|+.-.
T Consensus 129 -------~g~l~ald~~tG~~~W~~~~~-~----~~--~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 129 -------KGQVYALNAEDGEVAWQTKVA-G----EA--LSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred -------CCEEEEEECCCCCCcccccCC-C----ce--ecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecC
Confidence 235999999998888976521 1 11 1222333446666432 23599999999988898854
Q ss_pred CCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCC-------cccceEEEEeCCE
Q 004198 198 PEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPS-------PRYQHAAVFVGAR 270 (769)
Q Consensus 198 ~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~-------~R~~hs~~~~~~~ 270 (769)
.... ...+.. +..++.++.+|+..+. ..++.++.. +++-.|......+.. .....+-++.++.
T Consensus 189 ~~~~-~~~~~~-~sP~v~~~~v~~~~~~-------g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 189 DVPS-LTLRGE-SAPATAFGGAIVGGDN-------GRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred CCCc-ccccCC-CCCEEECCEEEEEcCC-------CEEEEEEcc-CChhhheeccccCCCccchhcccccCCCcEEECCE
Confidence 3210 011111 1222345666664321 346677765 444455433221111 0112344566888
Q ss_pred EEEEecccCCCCcccCCCcEEEEECCCCc--EEeccCCccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcCC
Q 004198 271 LHVTGGALRGGRAIEGEAAVAVLDTAAGV--WLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG 348 (769)
Q Consensus 271 i~V~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~~ 348 (769)
+|+.+. ...++++|+.+++ |+.-.. . . ...+..+++||+....
T Consensus 259 vy~~~~----------~g~l~ald~~tG~~~W~~~~~--~------------------~---~~~~~~~~~vy~~~~~-- 303 (394)
T PRK11138 259 VYALAY----------NGNLVALDLRSGQIVWKREYG--S------------------V---NDFAVDGGRIYLVDQN-- 303 (394)
T ss_pred EEEEEc----------CCeEEEEECCCCCEEEeecCC--C------------------c---cCcEEECCEEEEEcCC--
Confidence 888653 2358999998864 875211 1 1 1245678899987532
Q ss_pred CccccceEEecCCC
Q 004198 349 DILLDDFLVAENSP 362 (769)
Q Consensus 349 ~~~~~D~~~ld~~~ 362 (769)
..++.+|..+
T Consensus 304 ----g~l~ald~~t 313 (394)
T PRK11138 304 ----DRVYALDTRG 313 (394)
T ss_pred ----CeEEEEECCC
Confidence 3467777654
No 94
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.47 E-value=9.7e-05 Score=72.00 Aligned_cols=67 Identities=27% Similarity=0.231 Sum_probs=44.7
Q ss_pred EEEEccCCCCHHHHHHHHHH-hCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchh
Q 004198 583 VKVFGDLHGQFGDLMRLFDE-YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 583 i~viGDiHG~~~~l~~~l~~-~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
+.+++|||+....+...+.. ......+ -++++||+++++.....+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d------~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDAD------ILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCC------EEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 46899999998777655421 1111111 5788999999987665544 2222 23346799999999985
No 95
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.44 E-value=0.00031 Score=74.31 Aligned_cols=69 Identities=19% Similarity=0.062 Sum_probs=48.7
Q ss_pred CEEEEccCCCC----HHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCC--CChHHHHHHHHHhhhcCCCceEEecCCc
Q 004198 582 PVKVFGDLHGQ----FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG--QHSLETITLLLALKIEYPENVHLIRGNH 655 (769)
Q Consensus 582 ~i~viGDiHG~----~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG--~~s~e~l~ll~~lk~~~p~~v~llrGNH 655 (769)
.|.+++|||.. ...+.++++.......+ -++++||++|++ ....++..+|..|+... .++.+.|||
T Consensus 51 rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pD------lVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNH 122 (271)
T PRK11340 51 KILFLADLHYSRFVPLSLISDAIALGIEQKPD------LILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNH 122 (271)
T ss_pred EEEEEcccCCCCcCCHHHHHHHHHHHHhcCCC------EEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCC
Confidence 48999999976 45567777665432222 678899999953 33345667777776544 499999999
Q ss_pred chh
Q 004198 656 EAA 658 (769)
Q Consensus 656 E~~ 658 (769)
|..
T Consensus 123 D~~ 125 (271)
T PRK11340 123 DRP 125 (271)
T ss_pred Ccc
Confidence 974
No 96
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.36 E-value=0.08 Score=59.23 Aligned_cols=217 Identities=16% Similarity=0.184 Sum_probs=120.0
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCC
Q 004198 75 NSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (769)
Q Consensus 75 ~dv~~yD~~~~~--W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~ 152 (769)
+.++++|..+++ |+.-... . ...+-+..++.||+..+ ...++.||..+.+..|..-.. .+....
T Consensus 130 g~l~ald~~tG~~~W~~~~~~----~--~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~-~~~~~~ 195 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVAG----E--ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLD-VPSLTL 195 (394)
T ss_pred CEEEEEECCCCCCcccccCCC----c--eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCC-CCcccc
Confidence 579999998875 9854321 1 11223445778887543 235999999998888987531 111111
Q ss_pred ccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCC--CCCCCccc--ccEEEEecCCEEEEEcccCCC
Q 004198 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE--GDRPSARM--YATASARSDGMFLLCGGRDAS 228 (769)
Q Consensus 153 R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~--~~~P~~r~--~hsa~~~~~g~l~v~GG~~~~ 228 (769)
+...+-++..+ .+|+..+ + ..++.+|.++....|+.-... +.....|. ..+..+..++.+|+.+. +
T Consensus 196 ~~~~sP~v~~~-~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~-- 265 (394)
T PRK11138 196 RGESAPATAFG-GAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N-- 265 (394)
T ss_pred cCCCCCEEECC-EEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C--
Confidence 11122223333 5555332 2 358889998887789753211 00000011 11222345778887542 1
Q ss_pred CCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCC--cEEeccCC
Q 004198 229 GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLDRNGL 306 (769)
Q Consensus 229 ~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~--~W~~~~~~ 306 (769)
..++.+|.. +++-.|....+.. ...++.++.+|+... ...++++|++++ .|+.-...
T Consensus 266 ----g~l~ald~~-tG~~~W~~~~~~~------~~~~~~~~~vy~~~~----------~g~l~ald~~tG~~~W~~~~~~ 324 (394)
T PRK11138 266 ----GNLVALDLR-SGQIVWKREYGSV------NDFAVDGGRIYLVDQ----------NDRVYALDTRGGVELWSQSDLL 324 (394)
T ss_pred ----CeEEEEECC-CCCEEEeecCCCc------cCcEEECCEEEEEcC----------CCeEEEEECCCCcEEEcccccC
Confidence 357888876 3454565543221 134567899998753 245999999876 48642211
Q ss_pred ccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcCCCccccceEEecCCC
Q 004198 307 VTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSP 362 (769)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~~~~~~~D~~~ld~~~ 362 (769)
.+...+.++.+++||+... ++ .++.+|..+
T Consensus 325 --------------------~~~~~sp~v~~g~l~v~~~-~G-----~l~~ld~~t 354 (394)
T PRK11138 325 --------------------HRLLTAPVLYNGYLVVGDS-EG-----YLHWINRED 354 (394)
T ss_pred --------------------CCcccCCEEECCEEEEEeC-CC-----EEEEEECCC
Confidence 2333445567888887432 32 355666554
No 97
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.31 E-value=0.00039 Score=71.10 Aligned_cols=70 Identities=29% Similarity=0.289 Sum_probs=49.1
Q ss_pred CEEEEccCCCCHH----HHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChH-HHHHHHHHhhhcCCCceEEecCCcc
Q 004198 582 PVKVFGDLHGQFG----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-ETITLLLALKIEYPENVHLIRGNHE 656 (769)
Q Consensus 582 ~i~viGDiHG~~~----~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~-e~l~ll~~lk~~~p~~v~llrGNHE 656 (769)
.+.+++|+|.... .+.++++.+.....+ -+++.||++|.+.... ++..++..++ .+..++++.||||
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d------~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD 74 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINALKPD------LVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHD 74 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhccCCC------EEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCcc
Confidence 4889999998743 566666665432222 6788999999987764 5555555543 3356999999999
Q ss_pred hhh
Q 004198 657 AAD 659 (769)
Q Consensus 657 ~~~ 659 (769)
...
T Consensus 75 ~~~ 77 (223)
T cd07385 75 YYS 77 (223)
T ss_pred ccc
Confidence 743
No 98
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.22 E-value=0.00077 Score=62.80 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=39.9
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcch
Q 004198 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 584 ~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
.|++|.||..+.+.++.... ...+ .++++||+. .+++..+..++ ...++.++||||.
T Consensus 1 ~viSDtH~~~~~~~~~~~~~--~~~d------~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D~ 57 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL--EGVD------LILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHDV 57 (129)
T ss_pred CeeccccCccccchHHHhhC--CCCC------EEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCcc
Confidence 38999999988777766652 2222 789999983 34556665542 2358999999994
No 99
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.22 E-value=0.068 Score=54.91 Aligned_cols=203 Identities=8% Similarity=0.042 Sum_probs=105.4
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccc-eEEEEC----C-EEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCC
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAH-AAAAVG----T-MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ 148 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~h-s~~~~~----~-~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~ 148 (769)
..++++||.|++|..|+....++.....+ .....+ . +|+.+...... .....+.+|++.+ .+|..+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~--~~Wr~~~~--~ 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGS--NSWRTIEC--S 88 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCC--CCcccccc--C
Confidence 36889999999999997531110001111 111122 2 55555442111 1345789999999 57999852 1
Q ss_pred CCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEE-cCCCCCCCCccc---ccEEEEecCCEEEEEcc
Q 004198 149 GPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQR-LNPEGDRPSARM---YATASARSDGMFLLCGG 224 (769)
Q Consensus 149 ~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~-v~~~~~~P~~r~---~hsa~~~~~g~l~v~GG 224 (769)
.+........+.+++ .+|-+...........+..||+.+. +|.. ++. |..+. .+...+..+|+|.+...
T Consensus 89 ~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~IvsFDl~~E--~f~~~i~~----P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 89 PPHHPLKSRGVCING-VLYYLAYTLKTNPDYFIVSFDVSSE--RFKEFIPL----PCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred CCCccccCCeEEECC-EEEEEEEECCCCCcEEEEEEEcccc--eEeeeeec----CccccccccceEEEEECCEEEEEEe
Confidence 222111222445555 5555553322111126888999999 7884 432 22211 12334445688877665
Q ss_pred cCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccc----eEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCC
Q 004198 225 RDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQ----HAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG 298 (769)
Q Consensus 225 ~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~----hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~ 298 (769)
.... ..-++|.++......|+....-..++.++.. ...+..+++|++.... .. ..-+.+||+.++
T Consensus 162 ~~~~--~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~------~~~~~~y~~~~~ 230 (230)
T TIGR01640 162 KKDT--NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN------PFYIFYYNVGEN 230 (230)
T ss_pred cCCC--CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC------ceEEEEEeccCC
Confidence 3221 1268999875544455532221222222222 2233447888877652 10 113889998764
No 100
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.22 E-value=0.0012 Score=64.49 Aligned_cols=40 Identities=35% Similarity=0.525 Sum_probs=29.9
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhh
Q 004198 616 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (769)
.++++||+++++..... +.++.++ +..+++++||||....
T Consensus 45 ~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 45 TVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred EEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 78999999999986644 4444443 3469999999997543
No 101
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.22 E-value=0.00053 Score=71.25 Aligned_cols=69 Identities=22% Similarity=0.291 Sum_probs=45.8
Q ss_pred CEEEEccCCCCH------HHHHHHHHHhCCCCCCCCCcceeEEEeccccCC--C-----CChHHHHHHHHHhhhcCCCce
Q 004198 582 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDR--G-----QHSLETITLLLALKIEYPENV 648 (769)
Q Consensus 582 ~i~viGDiHG~~------~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDr--G-----~~s~e~l~ll~~lk~~~p~~v 648 (769)
++++++|+|... ..+.++++.....+ + .++++||++|. | +...+++.+|..|+.. +-.+
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~-d------~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v 73 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEARQA-D------ALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPC 73 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhhccC-C------EEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeE
Confidence 488999999542 23455554322111 1 68889999985 2 3346777777777633 3479
Q ss_pred EEecCCcchh
Q 004198 649 HLIRGNHEAA 658 (769)
Q Consensus 649 ~llrGNHE~~ 658 (769)
++++||||..
T Consensus 74 ~~v~GNHD~~ 83 (241)
T PRK05340 74 YFMHGNRDFL 83 (241)
T ss_pred EEEeCCCchh
Confidence 9999999964
No 102
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.10 E-value=0.29 Score=50.00 Aligned_cols=216 Identities=19% Similarity=0.283 Sum_probs=121.2
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCcccccce--EEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCC
Q 004198 75 NSVHLYDVLTRK--WTRIRPAGEPPSPRAAHA--AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP 150 (769)
Q Consensus 75 ~dv~~yD~~~~~--W~~l~~~g~~P~~R~~hs--~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p 150 (769)
+.+.++|+.+++ |+.-. + .+..+.. .+..++.+|+..+ ...++++|..+.+..|+.-. +
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~---~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~-----~ 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--G---PGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL-----P 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--S---SSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC-----S
T ss_pred CEEEEEECCCCCEEEEEEC--C---CCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec-----c
Confidence 468899998875 88632 1 1122222 3346889998742 36699999999878898773 2
Q ss_pred CCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEE-EcCCCCCCCCcccccEEEEecCCEEEEEcccCCCC
Q 004198 151 GPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQ-RLNPEGDRPSARMYATASARSDGMFLLCGGRDASG 229 (769)
Q Consensus 151 ~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~-~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~ 229 (769)
.+-... ....+ +.+|+..+. +.++++|..+....|+ ...... +............++.+|+...
T Consensus 66 ~~~~~~-~~~~~-~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----- 130 (238)
T PF13360_consen 66 GPISGA-PVVDG-GRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSP--PAGVRSSSSPAVDGDRLYVGTS----- 130 (238)
T ss_dssp SCGGSG-EEEET-TEEEEEETT------SEEEEEETTTSCEEEEEEE-SSC--TCSTB--SEEEEETTEEEEEET-----
T ss_pred ccccce-eeecc-cccccccce------eeeEecccCCcceeeeecccccc--ccccccccCceEecCEEEEEec-----
Confidence 221222 33444 477766521 2799999999988999 454321 1222222223334666666543
Q ss_pred CcccceEEEecCCCCceEEEeCCCCCCCc-------ccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCc--E
Q 004198 230 APLADAYGLLMHRNGQWEWTLAPGVAPSP-------RYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--W 300 (769)
Q Consensus 230 ~~l~d~~~ld~~~~~~W~W~~~~~~~P~~-------R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~--W 300 (769)
-..++.+|.. +|+-.|......++.. ......++.++.+|+..+.. .+..+|.++++ |
T Consensus 131 --~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----------~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 131 --SGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG----------RVVAVDLATGEKLW 197 (238)
T ss_dssp --CSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS----------SEEEEETTTTEEEE
T ss_pred --cCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC----------eEEEEECCCCCEEE
Confidence 3567888876 3444555543332211 11234444467888876521 25666999987 8
Q ss_pred EeccCCccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcCCCccccceEEecCCCC
Q 004198 301 LDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPF 363 (769)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~~~~~~~D~~~ld~~~~ 363 (769)
+.. .. -........++.||+.. .+ ..++.+|.++-
T Consensus 198 ~~~--~~--------------------~~~~~~~~~~~~l~~~~-~~-----~~l~~~d~~tG 232 (238)
T PF13360_consen 198 SKP--IS--------------------GIYSLPSVDGGTLYVTS-SD-----GRLYALDLKTG 232 (238)
T ss_dssp EEC--SS---------------------ECECEECCCTEEEEEE-TT-----TEEEEEETTTT
T ss_pred Eec--CC--------------------CccCCceeeCCEEEEEe-CC-----CEEEEEECCCC
Confidence 443 21 11122445567777776 32 44667776653
No 103
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.08 E-value=0.0011 Score=68.68 Aligned_cols=68 Identities=25% Similarity=0.190 Sum_probs=46.0
Q ss_pred CEEEEccCCCCH------HHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCc
Q 004198 582 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (769)
Q Consensus 582 ~i~viGDiHG~~------~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNH 655 (769)
.|.+++|+|..+ ..|.++++.+.....+ -+|+.||++++.+.+.+.+..+..+ .+..++++.|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d------~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKID------HLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCC------EEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 378999999653 2245566655322222 5888999999876666666555543 345799999999
Q ss_pred chh
Q 004198 656 EAA 658 (769)
Q Consensus 656 E~~ 658 (769)
|..
T Consensus 72 D~~ 74 (239)
T TIGR03729 72 DML 74 (239)
T ss_pred CCC
Confidence 964
No 104
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=96.97 E-value=0.0025 Score=60.33 Aligned_cols=41 Identities=32% Similarity=0.409 Sum_probs=28.0
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHhhhcCCCceEEecCCcch
Q 004198 616 DYLFLGDYVDRGQHS--LETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s--~e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
-++++||+++.|... .+...++..++... ..+++++||||.
T Consensus 38 ~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD~ 80 (144)
T cd07400 38 LVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHDV 80 (144)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCeE
Confidence 688899999988742 22334444443221 379999999997
No 105
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=96.97 E-value=0.11 Score=53.35 Aligned_cols=187 Identities=10% Similarity=0.137 Sum_probs=101.0
Q ss_pred CCcccccceeecCCCCCCCcc--ccEEEEecccC-CCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcE
Q 004198 11 PSYRTLETYWDTDEDAPGPRC--GHTLTAVAATK-TTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKW 87 (769)
Q Consensus 11 ~~y~~~~~~w~~~~~~P~~R~--ght~~~v~~~~-~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W 87 (769)
-.+||.|++|..++..+.++. +.....++-.. ...=|++-+....... ....+.+|+..++.|
T Consensus 17 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~--------------~~~~~~Vys~~~~~W 82 (230)
T TIGR01640 17 VVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR--------------NQSEHQVYTLGSNSW 82 (230)
T ss_pred EEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC--------------CCccEEEEEeCCCCc
Confidence 357899999999976554321 11011221111 1122555554321110 235789999999999
Q ss_pred EEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEE-eeecCCCCCCcc----ccEEEEEC
Q 004198 88 TRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHR-VVVQGQGPGPRY----GHVMDLVS 162 (769)
Q Consensus 88 ~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~-~~~~g~~p~~R~----~hs~~~~~ 162 (769)
+.+... ++........+.+++.+|-+...... .....+..||+.+ .+|.. ++ +|..+. ...++.++
T Consensus 83 r~~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~--E~f~~~i~----~P~~~~~~~~~~~L~~~~ 153 (230)
T TIGR01640 83 RTIECS--PPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSS--ERFKEFIP----LPCGNSDSVDYLSLINYK 153 (230)
T ss_pred cccccC--CCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEccc--ceEeeeee----cCccccccccceEEEEEC
Confidence 998742 22211222367788888887753221 1112699999999 56884 53 333322 33555666
Q ss_pred CcEEEEEecCCCCCccCceeEEe-CCCCCceEEEcCCCCCCCCccc---ccEEEEecCCEEEEEcc
Q 004198 163 QRYLVSVSGNDGKRVLSDAWALD-TAQKPYVWQRLNPEGDRPSARM---YATASARSDGMFLLCGG 224 (769)
Q Consensus 163 ~~~l~v~GG~~~~~~~~dv~~~d-~~~~~~~W~~v~~~~~~P~~r~---~hsa~~~~~g~l~v~GG 224 (769)
+ .|.++...... ..-++|+++ .... +|++.-.....+.++. ........+|.+++...
T Consensus 154 G-~L~~v~~~~~~-~~~~IWvl~d~~~~--~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 154 G-KLAVLKQKKDT-NNFDLWVLNDAGKQ--EWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred C-EEEEEEecCCC-CcEEEEEECCCCCC--ceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 4 66665543321 125789886 4344 6988654432122222 12334556777777654
No 106
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.91 E-value=0.61 Score=47.59 Aligned_cols=184 Identities=20% Similarity=0.234 Sum_probs=105.1
Q ss_pred CCcEEEEECCCCc--EEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEE-eeecCCCC
Q 004198 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHR-VVVQGQGP 150 (769)
Q Consensus 74 ~~dv~~yD~~~~~--W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~-~~~~g~~p 150 (769)
.+.++++|..+++ |+.-... +.....+..++.||+..+. +.++++|..+.+..|+. ... .+..
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~------~~~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~-~~~~ 110 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPG------PISGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTS-SPPA 110 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSS------CGGSGEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-S-SCTC
T ss_pred CCEEEEEECCCCCEEEEeeccc------cccceeeecccccccccce-------eeeEecccCCcceeeeecccc-cccc
Confidence 3689999998875 8765421 1222246778888887632 26999999998889994 432 1111
Q ss_pred CCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCc--cc--ccEEEEecCCEEEEEcccC
Q 004198 151 GPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA--RM--YATASARSDGMFLLCGGRD 226 (769)
Q Consensus 151 ~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~--r~--~hsa~~~~~g~l~v~GG~~ 226 (769)
..+...+..+. ++.+|+... ...++++|++++...|+.-...+..... .. ..+..+..++.+|++.+..
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 111 GVRSSSSPAVD-GDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp STB--SEEEEE-TTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred ccccccCceEe-cCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 12233344334 446666543 3568999999887789886533110000 00 1123344567888876532
Q ss_pred CCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCc--EE
Q 004198 227 ASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--WL 301 (769)
Q Consensus 227 ~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~--W~ 301 (769)
.+..+|..+. .-.|...... ........++.+|+.. . ...++++|.++++ |+
T Consensus 184 -------~~~~~d~~tg-~~~w~~~~~~-----~~~~~~~~~~~l~~~~-~---------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 184 -------RVVAVDLATG-EKLWSKPISG-----IYSLPSVDGGTLYVTS-S---------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -------SEEEEETTTT-EEEEEECSS------ECECEECCCTEEEEEE-T---------TTEEEEEETTTTEEEEE
T ss_pred -------eEEEEECCCC-CEEEEecCCC-----ccCCceeeCCEEEEEe-C---------CCEEEEEECCCCCEEeE
Confidence 2566766544 4346333111 1122344577777775 2 2459999999874 64
No 107
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.85 E-value=0.0029 Score=66.81 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=46.4
Q ss_pred CEEEEccCC-CC------------HHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCC-hHHHHHHHHHhhhcCCCc
Q 004198 582 PVKVFGDLH-GQ------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-SLETITLLLALKIEYPEN 647 (769)
Q Consensus 582 ~i~viGDiH-G~------------~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~-s~e~l~ll~~lk~~~p~~ 647 (769)
.+.+++|+| +. ...|.++++.+.....+ -+|++||+++.|.. +.+-+..++++-...+-.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d------~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLD------FVVQLGDIIDGDNARAEEALDAVLAILDRLKGP 75 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCC------EEEECCCeecCCCchHHHHHHHHHHHHHhcCCC
Confidence 378999999 22 35566677766432222 57889999998873 333343333333233357
Q ss_pred eEEecCCcchhh
Q 004198 648 VHLIRGNHEAAD 659 (769)
Q Consensus 648 v~llrGNHE~~~ 659 (769)
++++.||||...
T Consensus 76 ~~~v~GNHD~~~ 87 (267)
T cd07396 76 VHHVLGNHDLYN 87 (267)
T ss_pred EEEecCcccccc
Confidence 999999999754
No 108
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.83 E-value=0.55 Score=52.05 Aligned_cols=180 Identities=21% Similarity=0.183 Sum_probs=96.9
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecC--CCC
Q 004198 75 NSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG--QGP 150 (769)
Q Consensus 75 ~dv~~yD~~~~~--W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g--~~p 150 (769)
+.++++|+.+++ |+.-... .....+...+.+..++.+|+ |.. ...++.+|+.+.+..|+.-.... ...
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~~~~v~~-~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~ 226 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVT-PALTLRGSASPVIADGGVLV-GFA------GGKLVALDLQTGQPLWEQRVALPKGRTE 226 (377)
T ss_pred CeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEECCEEEE-ECC------CCEEEEEEccCCCEeeeeccccCCCCCc
Confidence 468999998764 8754322 11111233344556666654 322 12589999998777887542100 000
Q ss_pred CCc---cccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCC
Q 004198 151 GPR---YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA 227 (769)
Q Consensus 151 ~~R---~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~ 227 (769)
..| ...+. .+.++.+|+.+. + ..+++||.++....|..-... ....+..++.+|+...
T Consensus 227 ~~~~~~~~~~p-~~~~~~vy~~~~-~-----g~l~a~d~~tG~~~W~~~~~~---------~~~p~~~~~~vyv~~~--- 287 (377)
T TIGR03300 227 LERLVDVDGDP-VVDGGQVYAVSY-Q-----GRVAALDLRSGRVLWKRDASS---------YQGPAVDDNRLYVTDA--- 287 (377)
T ss_pred hhhhhccCCcc-EEECCEEEEEEc-C-----CEEEEEECCCCcEEEeeccCC---------ccCceEeCCEEEEECC---
Confidence 001 11122 233446766442 2 359999999887789764211 1222345778887642
Q ss_pred CCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCc
Q 004198 228 SGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (769)
Q Consensus 228 ~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~ 299 (769)
-..++.+|.. ++.-.|..... ..+...+.++.++.+|+... ...++++|..+++
T Consensus 288 ----~G~l~~~d~~-tG~~~W~~~~~---~~~~~ssp~i~g~~l~~~~~----------~G~l~~~d~~tG~ 341 (377)
T TIGR03300 288 ----DGVVVALDRR-SGSELWKNDEL---KYRQLTAPAVVGGYLVVGDF----------EGYLHWLSREDGS 341 (377)
T ss_pred ----CCeEEEEECC-CCcEEEccccc---cCCccccCEEECCEEEEEeC----------CCEEEEEECCCCC
Confidence 2457788875 33445544210 11223344556787776421 2358899987764
No 109
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.79 E-value=0.45 Score=52.71 Aligned_cols=183 Identities=17% Similarity=0.194 Sum_probs=100.6
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCC
Q 004198 75 NSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (769)
Q Consensus 75 ~dv~~yD~~~~~--W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~ 152 (769)
+.++++|..+++ |+.-... . ...+.+..++.+|+..+ ...++++|..+.+..|+.-.. ++....
T Consensus 115 g~l~ald~~tG~~~W~~~~~~-----~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~-~~~~~~ 180 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLSS-----E-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRV-TPALTL 180 (377)
T ss_pred CEEEEEECCCCcEeeeeccCc-----e-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccC-CCceee
Confidence 579999998765 8754321 1 12233445778887543 234999999987778976531 111111
Q ss_pred ccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCC--CCCCccc--ccEEEEecCCEEEEEcccCCC
Q 004198 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEG--DRPSARM--YATASARSDGMFLLCGGRDAS 228 (769)
Q Consensus 153 R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~--~~P~~r~--~hsa~~~~~g~l~v~GG~~~~ 228 (769)
+...+.++.++ .+ ++|..+ ..++.+|+++....|+.-.... .....+. ..+...+.++.+|+.+.
T Consensus 181 ~~~~sp~~~~~-~v-~~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~---- 249 (377)
T TIGR03300 181 RGSASPVIADG-GV-LVGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY---- 249 (377)
T ss_pred cCCCCCEEECC-EE-EEECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc----
Confidence 22223334443 44 444432 2588999988877897532210 0000111 11122335777777542
Q ss_pred CCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCC--cEEe
Q 004198 229 GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLD 302 (769)
Q Consensus 229 ~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~--~W~~ 302 (769)
-..++.++.. ++.-.|...... ..+.++.++++|+... ...++++|..++ .|+.
T Consensus 250 ---~g~l~a~d~~-tG~~~W~~~~~~------~~~p~~~~~~vyv~~~----------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 250 ---QGRVAALDLR-SGRVLWKRDASS------YQGPAVDDNRLYVTDA----------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ---CCEEEEEECC-CCcEEEeeccCC------ccCceEeCCEEEEECC----------CCeEEEEECCCCcEEEcc
Confidence 1357888875 444456543211 1234456888888642 245899998776 4765
No 110
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=96.77 E-value=0.0023 Score=66.02 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=42.9
Q ss_pred EEEEccCCCCH------HHHHHHHHHhCCCCCCCCCcceeEEEeccccCC--C---CC--hHHHHHHHHHhhhcCCCceE
Q 004198 583 VKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDR--G---QH--SLETITLLLALKIEYPENVH 649 (769)
Q Consensus 583 i~viGDiHG~~------~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDr--G---~~--s~e~l~ll~~lk~~~p~~v~ 649 (769)
+++++|+|... ..+.+.+......+ + .++++||++|. | +. ..+++.+|..|+.. +..++
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~-d------~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~ 72 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEARKA-D------ALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCY 72 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhccC-C------EEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEE
Confidence 36899999542 23444444432111 2 68889999995 2 11 23556666666533 35799
Q ss_pred EecCCcchh
Q 004198 650 LIRGNHEAA 658 (769)
Q Consensus 650 llrGNHE~~ 658 (769)
++.||||..
T Consensus 73 ~v~GNHD~~ 81 (231)
T TIGR01854 73 FMHGNRDFL 81 (231)
T ss_pred EEcCCCchh
Confidence 999999974
No 111
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.75 E-value=0.0054 Score=70.52 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=60.7
Q ss_pred CCEEEEccCC-CCH----HHHHHHHHHhC-CCCCCC--CCcceeEEEeccccCC-CCCh---------------HHHHHH
Q 004198 581 APVKVFGDLH-GQF----GDLMRLFDEYG-FPSTAG--DITYIDYLFLGDYVDR-GQHS---------------LETITL 636 (769)
Q Consensus 581 ~~i~viGDiH-G~~----~~l~~~l~~~~-~~~~~~--~~~~~~~vfLGD~vDr-G~~s---------------~e~l~l 636 (769)
..+.+++|+| |.. ..+.++++.+. ..+.+. ......+|++||++|. |.++ .++..+
T Consensus 244 ~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~ 323 (504)
T PRK04036 244 VYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEY 323 (504)
T ss_pred cEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHH
Confidence 4589999999 652 22444444432 211100 0001168889999994 3221 134455
Q ss_pred HHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhhccccceEEEe-ceEEEEcCCC
Q 004198 637 LLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGI 710 (769)
Q Consensus 637 l~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i~-~~i~~vHgGi 710 (769)
|..+.. .-.|++++||||............+++..+-.. .-..++.. |....++ .+++++||-.
T Consensus 324 L~~L~~--~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~-------~~v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 324 LKQIPE--DIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPE-------HNVTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHhhhc--CCeEEEecCCCcchhhccCCCCccHHHHHhcCc-------CCeEEecC-CeEEEECCEEEEEECCCC
Confidence 555532 246999999999754332221112222221110 01223333 5444444 4789999875
No 112
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.72 E-value=0.0033 Score=65.83 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=43.6
Q ss_pred EEEEccCCCCHHHHHHHHHHhC---CCCCCCCCcceeEEEeccccCCCC-ChHHHHH------HHHHh------hhcCCC
Q 004198 583 VKVFGDLHGQFGDLMRLFDEYG---FPSTAGDITYIDYLFLGDYVDRGQ-HSLETIT------LLLAL------KIEYPE 646 (769)
Q Consensus 583 i~viGDiHG~~~~l~~~l~~~~---~~~~~~~~~~~~~vfLGD~vDrG~-~s~e~l~------ll~~l------k~~~p~ 646 (769)
|+|+||+||++..+.+.++... ..+.+ -+|++||+-..+. ..++.+. -+..+ ..+.|-
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D------~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~ 74 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVD------LLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPI 74 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCc------EEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCe
Confidence 6899999999988876544432 12222 5788999975443 3333331 11111 223566
Q ss_pred ceEEecCCcchh
Q 004198 647 NVHLIRGNHEAA 658 (769)
Q Consensus 647 ~v~llrGNHE~~ 658 (769)
-+++|-||||..
T Consensus 75 ~t~fi~GNHE~~ 86 (262)
T cd00844 75 LTIFIGGNHEAS 86 (262)
T ss_pred eEEEECCCCCCH
Confidence 689999999964
No 113
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=96.65 E-value=0.01 Score=60.48 Aligned_cols=68 Identities=24% Similarity=0.234 Sum_probs=38.9
Q ss_pred EEEEccCCCCH----HHHHH----HHHHhCCCCCCCCCcceeEEEeccccCCCCChHH---HHHHHHHhhhcCCCceEEe
Q 004198 583 VKVFGDLHGQF----GDLMR----LFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLE---TITLLLALKIEYPENVHLI 651 (769)
Q Consensus 583 i~viGDiHG~~----~~l~~----~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e---~l~ll~~lk~~~p~~v~ll 651 (769)
++++||+|-.. ..+.+ +.+.......+ -+|++||++|.+....+ ...++..|+ +.+-.++++
T Consensus 3 ~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d------~iv~~GDl~~~~~~~~~~~~~~~~~~~l~-~~~~p~~~~ 75 (214)
T cd07399 3 LAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIA------FVLHLGDIVDDGDNDAEWEAADKAFARLD-KAGIPYSVL 75 (214)
T ss_pred EEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCC------EEEECCCccCCCCCHHHHHHHHHHHHHHH-HcCCcEEEE
Confidence 78999999532 22222 33332211111 57889999999984332 222333332 123458899
Q ss_pred cCCcch
Q 004198 652 RGNHEA 657 (769)
Q Consensus 652 rGNHE~ 657 (769)
+||||.
T Consensus 76 ~GNHD~ 81 (214)
T cd07399 76 AGNHDL 81 (214)
T ss_pred CCCCcc
Confidence 999993
No 114
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.52 E-value=1.8 Score=49.88 Aligned_cols=203 Identities=17% Similarity=0.202 Sum_probs=102.5
Q ss_pred CCcEEEEECCCCc--EEEecCCCCCCcccc--------------cceEEEE---CCEEEEECccCC-----------CCC
Q 004198 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRA--------------AHAAAAV---GTMVVFQGGIGP-----------AGH 123 (769)
Q Consensus 74 ~~dv~~yD~~~~~--W~~l~~~g~~P~~R~--------------~hs~~~~---~~~Iyv~GG~~~-----------~~~ 123 (769)
...+++||..+++ |+.-.....+-..+. -++..++ ++.||+..|-+. ...
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 5689999999875 875432111101110 0112233 467777654320 123
Q ss_pred CcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEE-----ECCc--EEEEEecCCCCCccCceeEEeCCCCCceEEEc
Q 004198 124 STDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDL-----VSQR--YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 196 (769)
Q Consensus 124 ~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~-----~~~~--~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v 196 (769)
..+.++.+|..+.+..|+.-......-.-+......+ +.+. .+++.|..+ ..++.+|.++....|+.-
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~-----G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN-----GFFYVLDRTTGKLISARP 328 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC-----ceEEEEECCCCcEeeEeE
Confidence 3467999999998889986421111000011111111 1121 244455433 349999999998889864
Q ss_pred CCCCCCCCcccccEEEEecCCEEEEEcccCC-----------CCCcccceEEEecCCCCceEEEeCCCCCC------Ccc
Q 004198 197 NPEGDRPSARMYATASARSDGMFLLCGGRDA-----------SGAPLADAYGLLMHRNGQWEWTLAPGVAP------SPR 259 (769)
Q Consensus 197 ~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~-----------~~~~l~d~~~ld~~~~~~W~W~~~~~~~P------~~R 259 (769)
.... ... ...+.+|+...... .......++.+|.. +++-.|....+... .+.
T Consensus 329 ~~~~---------~~~-~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~-tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 329 EVEQ---------PMA-YDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK-TGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred eecc---------ccc-cCCceEEEccccccccCcccccCCCCCCCceEEEEEeCC-CCcEeeEeeCCccccccccCCcc
Confidence 3210 001 11255665321110 01123457788875 45666766543110 122
Q ss_pred cceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCc--EEe
Q 004198 260 YQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--WLD 302 (769)
Q Consensus 260 ~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~--W~~ 302 (769)
.....++.++.+|+- .. ...+++||.++++ |+.
T Consensus 398 ~~~~~~~~g~~v~~g-~~---------dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 398 WGGSLATAGNLVFAG-AA---------DGYFRAFDATTGKELWKF 432 (488)
T ss_pred cCcceEecCCeEEEE-CC---------CCeEEEEECCCCceeeEE
Confidence 334455556655553 32 2348999998874 774
No 115
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.47 E-value=0.0083 Score=62.05 Aligned_cols=69 Identities=26% Similarity=0.305 Sum_probs=43.3
Q ss_pred CEEEEccCCCC------------HHHHHHHHHHhCCC--CCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCc
Q 004198 582 PVKVFGDLHGQ------------FGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPEN 647 (769)
Q Consensus 582 ~i~viGDiHG~------------~~~l~~~l~~~~~~--~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~ 647 (769)
.+.+++|||=. ...|.++++.+... ..+ -+|++||+++.|.. +....+.++..+.+-.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d------~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPD------LVLVTGDLTDDGSP--ESYERLRELLAALPIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCC------EEEECccCCCCCCH--HHHHHHHHHHhhcCCC
Confidence 37899999944 34566777765432 222 58889999998753 2222222222222457
Q ss_pred eEEecCCcchh
Q 004198 648 VHLIRGNHEAA 658 (769)
Q Consensus 648 v~llrGNHE~~ 658 (769)
++.++||||..
T Consensus 73 ~~~v~GNHD~~ 83 (240)
T cd07402 73 VYLLPGNHDDR 83 (240)
T ss_pred EEEeCCCCCCH
Confidence 89999999974
No 116
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.45 E-value=0.0058 Score=66.84 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=44.0
Q ss_pred CEEEEccCC-C-----------CHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCC-CChHHHHHHHHH----hhhcC
Q 004198 582 PVKVFGDLH-G-----------QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLA----LKIEY 644 (769)
Q Consensus 582 ~i~viGDiH-G-----------~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG-~~s~e~l~ll~~----lk~~~ 644 (769)
+++.++|+| | +...|.++++.+.-...+ -+|+.||++|+. +.+.+++.++.. +....
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD------~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~ 75 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGIT------TWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEA 75 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCC------EEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 478899999 4 223444555444322222 688899999975 445555444432 11123
Q ss_pred CCceEEecCCcchhh
Q 004198 645 PENVHLIRGNHEAAD 659 (769)
Q Consensus 645 p~~v~llrGNHE~~~ 659 (769)
+-.+++|.||||...
T Consensus 76 gi~v~~I~GNHD~~~ 90 (340)
T PHA02546 76 GITLHVLVGNHDMYY 90 (340)
T ss_pred CCeEEEEccCCCccc
Confidence 457999999999743
No 117
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=96.44 E-value=0.0094 Score=58.18 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=41.9
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
.|.|++|.|+...+..+..+.......+ -+|.+||++..... ..+.. ....+++.++||.|..
T Consensus 3 ~ilviSDtH~~~~~~~~~~~~~~~~~~d------~vih~GD~~~~~~~-----~~l~~---~~~~~i~~V~GN~D~~ 65 (172)
T COG0622 3 KILVISDTHGPLRAIEKALKIFNLEKVD------AVIHAGDSTSPFTL-----DALEG---GLAAKLIAVRGNCDGE 65 (172)
T ss_pred EEEEEeccCCChhhhhHHHHHhhhcCCC------EEEECCCcCCccch-----HHhhc---ccccceEEEEccCCCc
Confidence 4889999999997555555554433333 67779999975432 11111 0236899999999974
No 118
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.33 E-value=0.0016 Score=71.36 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=99.4
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecC----CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCC
Q 004198 553 FLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ 628 (769)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~e~~~l~~~~----~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~ 628 (769)
.|...++..+++.+.+++..+|+...+.+ -.+.++|.||++.|+.++++.- |... .-|++=|++++++.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~-----K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYI-----KAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhh-----heeeeccHHHHhHH
Confidence 46778888999999999999998877643 4789999999999999988764 2221 15999999999999
Q ss_pred ChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCC
Q 004198 629 HSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGEN 677 (769)
Q Consensus 629 ~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~ 677 (769)
..++.+..|...+...|+...+.|++||+..+-..++|..+....++..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~ 135 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDK 135 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCC
Confidence 9999999999999999999999999999988888888877666666443
No 119
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.32 E-value=0.0082 Score=62.79 Aligned_cols=71 Identities=23% Similarity=0.228 Sum_probs=45.0
Q ss_pred CEEEEccCCC-C-----------HHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHH----HHHHHhhhcCC
Q 004198 582 PVKVFGDLHG-Q-----------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI----TLLLALKIEYP 645 (769)
Q Consensus 582 ~i~viGDiHG-~-----------~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l----~ll~~lk~~~p 645 (769)
.++.++|+|- . ...|.++++.+.....+ -+|+.||++|+...+.+.. .+|..|+...|
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D------~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~ 75 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQID------ALLVAGDVFDTANPPAEAQELFNAFFRNLSDANP 75 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 3788999993 2 23444555444222222 5888999999886555443 34445544333
Q ss_pred CceEEecCCcchh
Q 004198 646 ENVHLIRGNHEAA 658 (769)
Q Consensus 646 ~~v~llrGNHE~~ 658 (769)
-.++++.||||..
T Consensus 76 i~v~~i~GNHD~~ 88 (253)
T TIGR00619 76 IPIVVISGNHDSA 88 (253)
T ss_pred ceEEEEccCCCCh
Confidence 5799999999975
No 120
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.27 E-value=0.012 Score=60.19 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=27.2
Q ss_pred eEEEeccccCCCCCh---HHHHHHHHHhhhcCCCceEEecCCcchhh
Q 004198 616 DYLFLGDYVDRGQHS---LETITLLLALKIEYPENVHLIRGNHEAAD 659 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s---~e~l~ll~~lk~~~p~~v~llrGNHE~~~ 659 (769)
.+|++||+.+..... .++..++..+. ..+++++||||...
T Consensus 61 ~vIi~GDl~h~~~~~~~~~~~~~~l~~~~----~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 61 ALIINGDLKHEFKKGLEWRFIREFIEVTF----RDLILIRGNHDALI 103 (225)
T ss_pred EEEEcCccccccCChHHHHHHHHHHHhcC----CcEEEECCCCCCcc
Confidence 799999999755442 23333443332 48999999999743
No 121
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.21 E-value=0.0093 Score=60.75 Aligned_cols=74 Identities=22% Similarity=0.204 Sum_probs=45.4
Q ss_pred CEEEEccCC-CCH--------------HHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcC--
Q 004198 582 PVKVFGDLH-GQF--------------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEY-- 644 (769)
Q Consensus 582 ~i~viGDiH-G~~--------------~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~-- 644 (769)
.|+.++|+| |.. ..|.++++.+.....+ .+|+.||++|....+.+.+..+...-.+.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVD------FVLIAGDLFDSNNPSPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCC------EEEECCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 378899999 321 2345555554332222 58889999998765554443332222121
Q ss_pred -CCceEEecCCcchhhhh
Q 004198 645 -PENVHLIRGNHEAADIN 661 (769)
Q Consensus 645 -p~~v~llrGNHE~~~~~ 661 (769)
.-.++++.||||.....
T Consensus 75 ~~~~v~~~~GNHD~~~~~ 92 (223)
T cd00840 75 AGIPVFIIAGNHDSPSRL 92 (223)
T ss_pred CCCCEEEecCCCCCcccc
Confidence 35799999999976643
No 122
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.20 E-value=0.016 Score=60.32 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=38.9
Q ss_pred EEEccCC--CCH---HHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCC-----C-------h----HHHHHHHHHhhh
Q 004198 584 KVFGDLH--GQF---GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ-----H-------S----LETITLLLALKI 642 (769)
Q Consensus 584 ~viGDiH--G~~---~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~-----~-------s----~e~l~ll~~lk~ 642 (769)
++++|+| +.. ..+..+++.+.-.... ......+|++||++|+.. . . .++..+|..|..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~-~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 80 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDS-ASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPS 80 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCccc-ccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhccc
Confidence 6899999 432 2223444433211110 000116888999999731 0 1 123334444432
Q ss_pred cCCCceEEecCCcchhh
Q 004198 643 EYPENVHLIRGNHEAAD 659 (769)
Q Consensus 643 ~~p~~v~llrGNHE~~~ 659 (769)
.-.|+++.||||...
T Consensus 81 --~~~v~~ipGNHD~~~ 95 (243)
T cd07386 81 --HIKIIIIPGNHDAVR 95 (243)
T ss_pred --CCeEEEeCCCCCccc
Confidence 357999999999753
No 123
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.18 E-value=0.0074 Score=58.18 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=27.6
Q ss_pred eEEEeccccCCCCCh-HH----HHHHHHHhhhcC-CCceEEecCCcchhh
Q 004198 616 DYLFLGDYVDRGQHS-LE----TITLLLALKIEY-PENVHLIRGNHEAAD 659 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s-~e----~l~ll~~lk~~~-p~~v~llrGNHE~~~ 659 (769)
.+|++||++|.+... .+ .+..+..+.... ...++++.||||...
T Consensus 41 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 41 VVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 689999999987642 12 222232222112 346999999999743
No 124
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.18 E-value=0.013 Score=62.03 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=44.3
Q ss_pred CEEEEccCC-C-----------CHHHHHHHHHHhCCC-CCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCce
Q 004198 582 PVKVFGDLH-G-----------QFGDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENV 648 (769)
Q Consensus 582 ~i~viGDiH-G-----------~~~~l~~~l~~~~~~-~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v 648 (769)
.++.|+|+| . ....|.++++.+... +.-+ -+|+.||+++.|. .+-+..+++.-.+.+..+
T Consensus 16 ~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D-----~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv 88 (275)
T PRK11148 16 RILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFD-----LIVATGDLAQDHS--SEAYQHFAEGIAPLRKPC 88 (275)
T ss_pred EEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCC-----EEEECCCCCCCCC--HHHHHHHHHHHhhcCCcE
Confidence 388999999 1 135677777765322 1111 5788999999874 233333333222345679
Q ss_pred EEecCCcchh
Q 004198 649 HLIRGNHEAA 658 (769)
Q Consensus 649 ~llrGNHE~~ 658 (769)
+++.||||..
T Consensus 89 ~~v~GNHD~~ 98 (275)
T PRK11148 89 VWLPGNHDFQ 98 (275)
T ss_pred EEeCCCCCCh
Confidence 9999999973
No 125
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=96.05 E-value=0.0032 Score=59.33 Aligned_cols=84 Identities=35% Similarity=0.590 Sum_probs=64.6
Q ss_pred hhhhccCCHHHHHHHhCCCCchhhhHH---HhHhhccccceEEEec-eEEEEcCCCCCCC-CChHHhhhccCCc--ccCC
Q 004198 659 DINALFGFRLECIERMGENDGIWAWTR---FNQLFNCLPLAALIEK-KIICMHGGIGRSI-HSVEQIEKLERPI--TMDA 731 (769)
Q Consensus 659 ~~~~~~g~~~e~~~~~~~~~~~~~~~~---~~~~f~~lP~~~~i~~-~i~~vHgGi~~~~-~~~~~i~~~~rp~--~~~~ 731 (769)
.+...+++.+++..++... ..|.+ ..++|+.||+.+++++ .++|.|+++++.+ ..+++++.+.|.. .+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~---~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 78 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEE---LEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPH 78 (155)
T ss_pred hhhhhhchhHHhhhhcCCc---eeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCC
Confidence 3455677888877777543 34655 9999999999999988 9999999999976 7888888887766 4444
Q ss_pred CccceeceeccCCCC
Q 004198 732 GSIILMDLLWFVLNI 746 (769)
Q Consensus 732 ~~~~~~dllWsdp~~ 746 (769)
.+ ...+.+|++|..
T Consensus 79 ~g-~~~~~~~~~~~~ 92 (155)
T COG0639 79 AG-HTHDLLWSDPDG 92 (155)
T ss_pred cc-ccccccCCCCCC
Confidence 44 556669998875
No 126
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.01 E-value=0.016 Score=64.80 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=29.1
Q ss_pred eEEEeccccCCCCChHHHH----HHHHHhhhcCCCceEEecCCcchh
Q 004198 616 DYLFLGDYVDRGQHSLETI----TLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s~e~l----~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
-+|+.||++|++..+.+.. .++..|+. .+-.++++.||||..
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~~~v~~I~GNHD~~ 87 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVVLAGNHDSV 87 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEcCCCCCh
Confidence 6788999999986554432 33444442 234699999999964
No 127
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=95.93 E-value=0.016 Score=56.91 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=26.9
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHhhhcCCCceEEecCCcchh
Q 004198 616 DYLFLGDYVDRGQHS--LETITLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s--~e~l~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
.+|++||++|..... .+...+-+.......-.+++++||||..
T Consensus 44 ~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 44 RLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred EEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccc
Confidence 799999999865432 2222211111223445899999999974
No 128
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.87 E-value=0.019 Score=59.26 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=25.8
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHhhhcCCCceEEecCCcch
Q 004198 616 DYLFLGDYVDRGQHS--LETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s--~e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
-+|+.||+++++... .+.+.+|.++ |..++++.||||.
T Consensus 44 ~viiaGDl~~~~~~~~~~~~l~~l~~l----~~~v~~V~GNHD~ 83 (232)
T cd07393 44 IVLIPGDISWAMKLEEAKLDLAWIDAL----PGTKVLLKGNHDY 83 (232)
T ss_pred EEEEcCCCccCCChHHHHHHHHHHHhC----CCCeEEEeCCccc
Confidence 577899999887532 2334444332 3358999999996
No 129
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=95.87 E-value=0.025 Score=56.76 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=29.3
Q ss_pred eEEEeccccCCCCC---hHHHHHHHHHhhhcCCCceEEecCCcc
Q 004198 616 DYLFLGDYVDRGQH---SLETITLLLALKIEYPENVHLIRGNHE 656 (769)
Q Consensus 616 ~~vfLGD~vDrG~~---s~e~l~ll~~lk~~~p~~v~llrGNHE 656 (769)
-+|++||+++.+.. +.+.+..++.......-.++++.||||
T Consensus 44 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 44 LVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred EEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 68899999997665 355565554443333457899999999
No 130
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.55 E-value=0.72 Score=48.80 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=70.7
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCccccc--ceEEEE-CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeec--CC
Q 004198 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAA--HAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ--GQ 148 (769)
Q Consensus 74 ~~dv~~yD~~~~~W~~l~~~g~~P~~R~~--hs~~~~-~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~--g~ 148 (769)
...+..||+.+.+|..+... ..+ .++... ++.||+.|-..-.+.....+-.||..+ .+|..+... ..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ 86 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNS 86 (281)
T ss_pred CCEEEEEECCCCEeecCCCC------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCccccc
Confidence 57899999999999976532 222 233333 568888887654443456688999999 779998642 24
Q ss_pred CCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCC
Q 004198 149 GPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNP 198 (769)
Q Consensus 149 ~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~ 198 (769)
.|.+....+....+...+++.|.... -..-+..|| .. +|+.+..
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~d--Gs--~W~~i~~ 130 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSAN--GSTFLMKYD--GS--SWSSIGS 130 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecC--CCceEEEEc--CC--ceEeccc
Confidence 56665444443335556777776521 223455564 34 7999876
No 131
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.55 E-value=4.1 Score=46.95 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=86.0
Q ss_pred CcEEEEECCCCc--EEEecCCC-CCCcc-cccceEEEEC-CEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCC
Q 004198 75 NSVHLYDVLTRK--WTRIRPAG-EPPSP-RAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQG 149 (769)
Q Consensus 75 ~dv~~yD~~~~~--W~~l~~~g-~~P~~-R~~hs~~~~~-~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~ 149 (769)
..++.+|..+++ |+.-.... ....+ -.....+..+ +.||+... ...++.+|..+.+..|+.-......
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~ 143 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQVWKFGNNDQVP 143 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeEEEEECCCCCEeeeecCCCCcC
Confidence 468999998765 98643221 00111 1112234445 78887543 2469999999988889865311000
Q ss_pred CCCccccEEEEECCcEEEEEecCCCC----CccCceeEEeCCCCCceEEEcCCCCCCCCcc---------------cccE
Q 004198 150 PGPRYGHVMDLVSQRYLVSVSGNDGK----RVLSDAWALDTAQKPYVWQRLNPEGDRPSAR---------------MYAT 210 (769)
Q Consensus 150 p~~R~~hs~~~~~~~~l~v~GG~~~~----~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r---------------~~hs 210 (769)
+......+.++.+ ..+|+ |..+.. .....+++||.++....|+.-.........+ ...+
T Consensus 144 ~~~~i~ssP~v~~-~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~ 221 (488)
T cd00216 144 PGYTMTGAPTIVK-KLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS 221 (488)
T ss_pred cceEecCCCEEEC-CEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC
Confidence 1111122333344 35554 432221 2346789999999888997644221110111 1112
Q ss_pred EEEe-cCCEEEEEcccCC-----------CCCcccceEEEecCCCCceEEEeC
Q 004198 211 ASAR-SDGMFLLCGGRDA-----------SGAPLADAYGLLMHRNGQWEWTLA 251 (769)
Q Consensus 211 a~~~-~~g~l~v~GG~~~-----------~~~~l~d~~~ld~~~~~~W~W~~~ 251 (769)
.++. .++.+|+..|... .....+.++.+|.. +++-.|...
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~-tG~~~W~~~ 273 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD-TGKVKWFYQ 273 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC-CCCEEEEee
Confidence 2222 3567777644221 11223568999986 566677654
No 132
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=0.066 Score=54.23 Aligned_cols=98 Identities=26% Similarity=0.360 Sum_probs=57.4
Q ss_pred EEccCCCC------HHHHHHHHHHhCCCCCCCCCcceeEEEeccccC--CCCC-----hHHHHHHHHHhhhcCCCceEEe
Q 004198 585 VFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVD--RGQH-----SLETITLLLALKIEYPENVHLI 651 (769)
Q Consensus 585 viGDiHG~------~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vD--rG~~-----s~e~l~ll~~lk~~~p~~v~ll 651 (769)
+|+|+|=. -+-|+++++.... ..+ .+++|||++| .|.. --+|...|..+. +...+++.+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad------~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a-~~G~~v~~i 73 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAA-QAD------ALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA-RKGTRVYYI 73 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccc-cCc------EEEEechhhhhhhcCCcccHHHHHHHHHHHHHH-hcCCeEEEe
Confidence 68899854 3445566665432 222 6888999998 4443 234445554443 346799999
Q ss_pred cCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhhccccceEEE---eceEEEEcCCC
Q 004198 652 RGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI---EKKIICMHGGI 710 (769)
Q Consensus 652 rGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i---~~~i~~vHgGi 710 (769)
.||||. .+...+ ....+ .+.-+|-..++ +.+++++||-.
T Consensus 74 ~GN~Df-ll~~~f------~~~~g-------------~~~l~~~~~~~~l~g~~~Ll~HGD~ 115 (237)
T COG2908 74 HGNHDF-LLGKRF------AQEAG-------------GMTLLPDPIVLDLYGKRILLAHGDT 115 (237)
T ss_pred cCchHH-HHHHHH------HhhcC-------------ceEEcCcceeeeecCcEEEEEeCCc
Confidence 999994 332221 11121 12334544444 47999999965
No 133
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=95.38 E-value=0.027 Score=57.23 Aligned_cols=42 Identities=31% Similarity=0.475 Sum_probs=26.4
Q ss_pred eEEEeccccCC--CC-----C-hHHHHHHHHHhhhcCCCceEEecCCcchh
Q 004198 616 DYLFLGDYVDR--GQ-----H-SLETITLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 616 ~~vfLGD~vDr--G~-----~-s~e~l~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
.+|++||++|. +. . ..+.+..++.+. .....++.+.||||..
T Consensus 33 ~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~v~GNHD~~ 82 (217)
T cd07398 33 ALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA-DRGTRVYYVPGNHDFL 82 (217)
T ss_pred EEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH-HCCCeEEEECCCchHH
Confidence 78999999983 11 1 122223333332 2346899999999974
No 134
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.38 E-value=0.042 Score=61.15 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=51.0
Q ss_pred CEEEEccCCCC------------HHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhc------
Q 004198 582 PVKVFGDLHGQ------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIE------ 643 (769)
Q Consensus 582 ~i~viGDiHG~------------~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~------ 643 (769)
.|.+++|+|-- +..|.++++.+.....+ -+|+.||+.|+..-|.+++..++.+-.+
T Consensus 5 KIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD------~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~ 78 (405)
T TIGR00583 5 RILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVD------MILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDK 78 (405)
T ss_pred EEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHhhccCC
Confidence 38899999942 45667777766433322 5788999999999898888554443322
Q ss_pred ------------------------------CCCceEEecCCcchhh
Q 004198 644 ------------------------------YPENVHLIRGNHEAAD 659 (769)
Q Consensus 644 ------------------------------~p~~v~llrGNHE~~~ 659 (769)
..-.||+|-||||...
T Consensus 79 p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 79 PCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred ccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1347999999999874
No 135
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.32 E-value=0.039 Score=57.81 Aligned_cols=70 Identities=20% Similarity=0.076 Sum_probs=39.3
Q ss_pred EEEEccCCCCHH------HH-HHHHHHhCCCCCCCCCcceeEEEeccccCCCCC--------hH---HHHHHHHHhhhcC
Q 004198 583 VKVFGDLHGQFG------DL-MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH--------SL---ETITLLLALKIEY 644 (769)
Q Consensus 583 i~viGDiHG~~~------~l-~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~--------s~---e~l~ll~~lk~~~ 644 (769)
++.++|||-... .. ..+++.+.....+ -+|++||++|+... .. +.+..+..+....
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd------~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPA------LVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVIN 75 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCC------EEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCC
Confidence 567899996322 11 2233333221112 58889999997652 11 2223333322223
Q ss_pred CCceEEecCCcchh
Q 004198 645 PENVHLIRGNHEAA 658 (769)
Q Consensus 645 p~~v~llrGNHE~~ 658 (769)
+..++.++||||..
T Consensus 76 ~~p~~~v~GNHD~~ 89 (256)
T cd07401 76 KEKWFDIRGNHDLF 89 (256)
T ss_pred cceEEEeCCCCCcC
Confidence 56799999999985
No 136
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=94.87 E-value=0.088 Score=55.90 Aligned_cols=73 Identities=26% Similarity=0.303 Sum_probs=49.6
Q ss_pred CEEEEccCCCC------HHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhh--hcCCCceEEecC
Q 004198 582 PVKVFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALK--IEYPENVHLIRG 653 (769)
Q Consensus 582 ~i~viGDiHG~------~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk--~~~p~~v~llrG 653 (769)
.+..|+|+|-- ...+.++++.+.....+ -+|+.||+.++|. .+-...+..+- ...+..+++++|
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D------~~v~tGDl~~~~~--~~~~~~~~~~l~~~~~~~~~~~vpG 73 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPD------LLVVTGDLTNDGE--PEEYRRLKELLARLELPAPVIVVPG 73 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCC------EEEEccCcCCCCC--HHHHHHHHHHHhhccCCCceEeeCC
Confidence 37889999977 34556666777644333 6889999999963 22233333332 366778999999
Q ss_pred Ccchhhhhh
Q 004198 654 NHEAADINA 662 (769)
Q Consensus 654 NHE~~~~~~ 662 (769)
|||....+.
T Consensus 74 NHD~~~~~~ 82 (301)
T COG1409 74 NHDARVVNG 82 (301)
T ss_pred CCcCCchHH
Confidence 999876554
No 137
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.75 E-value=8.7 Score=44.73 Aligned_cols=114 Identities=19% Similarity=0.180 Sum_probs=64.5
Q ss_pred CcEEEEECCCCc--EEEecCCC-C-CC---cccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecC
Q 004198 75 NSVHLYDVLTRK--WTRIRPAG-E-PP---SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG 147 (769)
Q Consensus 75 ~dv~~yD~~~~~--W~~l~~~g-~-~P---~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g 147 (769)
+.++++|..+++ |+.-.... . .+ ......+.+..+++||+... ...++++|..+.+..|+.-. .
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W~~~~--~ 149 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVVWSKKN--G 149 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEEeeccc--c
Confidence 469999998865 88543211 0 00 00112234556778887432 23599999999888898653 1
Q ss_pred CCCCC-ccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCC
Q 004198 148 QGPGP-RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNP 198 (769)
Q Consensus 148 ~~p~~-R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~ 198 (769)
..... ....+.++.++ .+|+............+..||.++....|+.-..
T Consensus 150 ~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 150 DYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred cccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 11111 11123334444 6655432222223457999999999888976543
No 138
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=94.74 E-value=0.068 Score=51.00 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=48.1
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcc
Q 004198 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 656 (769)
Q Consensus 584 ~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE 656 (769)
.|+||+||+++.+.+-++.+.- +.+.. --+|++||+..-....-+ +.-++.=+.+.|--.+++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~--k~gpF--d~~ic~Gdff~~~~~~~~-~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINK--KKGPF--DALLCVGDFFGDDEDDEE-LEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhc--ccCCe--eEEEEecCccCCccchhh-HHHHhcCCccCCCCEEEECCCCC
Confidence 4899999999999887777532 12221 157779999986555534 44444445567889999999998
No 139
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=94.74 E-value=0.094 Score=55.07 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=40.8
Q ss_pred EEEEccCCCCH----------------HHHHHHHHHhCCC-CCCCCCcceeEEEeccccCCCCChH---HHHHHHHH-hh
Q 004198 583 VKVFGDLHGQF----------------GDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSL---ETITLLLA-LK 641 (769)
Q Consensus 583 i~viGDiHG~~----------------~~l~~~l~~~~~~-~~~~~~~~~~~vfLGD~vDrG~~s~---e~l~ll~~-lk 641 (769)
+++++|+|--. ..|.++++.+... +.- .-+|++||+++.|...- +....+.. ++
T Consensus 7 f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~p-----d~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 7 FIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKP-----KFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred EEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCC-----CEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 67888888653 1345555555321 111 05778999999887531 11222222 22
Q ss_pred h-cCCCceEEecCCcchh
Q 004198 642 I-EYPENVHLIRGNHEAA 658 (769)
Q Consensus 642 ~-~~p~~v~llrGNHE~~ 658 (769)
. ..+-.++.+.||||..
T Consensus 82 ~~~~~vp~~~i~GNHD~~ 99 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVG 99 (262)
T ss_pred hccCCCcEEEeCCCCCCC
Confidence 1 1234699999999974
No 140
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=94.69 E-value=0.09 Score=52.21 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=39.4
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHH-HHHHHHHhhhcC---------------------C
Q 004198 588 DLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLE-TITLLLALKIEY---------------------P 645 (769)
Q Consensus 588 DiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e-~l~ll~~lk~~~---------------------p 645 (769)
|++|+=.=|.+.++.+-....- ..++||||++|.|.-+-+ --.....++..+ .
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~P-----d~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~ 98 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKP-----DAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGK 98 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCC-----CEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCC
Confidence 4456655666666655432211 168899999998864333 224444443332 1
Q ss_pred CceEEecCCcchh
Q 004198 646 ENVHLIRGNHEAA 658 (769)
Q Consensus 646 ~~v~llrGNHE~~ 658 (769)
-.+++|.||||--
T Consensus 99 i~~i~V~GNHDIG 111 (193)
T cd08164 99 TPLINIAGNHDVG 111 (193)
T ss_pred ceEEEECCcccCC
Confidence 4678999999973
No 141
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=94.59 E-value=0.071 Score=52.23 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=28.4
Q ss_pred eEEEeccccCCCCCh--HH---HHHHHHHhhhcC-----CCceEEecCCcchhh
Q 004198 616 DYLFLGDYVDRGQHS--LE---TITLLLALKIEY-----PENVHLIRGNHEAAD 659 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s--~e---~l~ll~~lk~~~-----p~~v~llrGNHE~~~ 659 (769)
.+||+||++|.+... .+ .+..+..+.... .-.++++.||||...
T Consensus 48 ~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 48 VVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred EEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 689999999988743 22 333333322111 356999999999853
No 142
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=94.54 E-value=0.045 Score=58.47 Aligned_cols=68 Identities=25% Similarity=0.207 Sum_probs=38.3
Q ss_pred CEEEEccCCCC----HHHHHHHHHHhCCCCCCCCCcceeEEEeccccCC-CCCh----HHHHHHHHHhhhcCCCceEEec
Q 004198 582 PVKVFGDLHGQ----FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-GQHS----LETITLLLALKIEYPENVHLIR 652 (769)
Q Consensus 582 ~i~viGDiHG~----~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDr-G~~s----~e~l~ll~~lk~~~p~~v~llr 652 (769)
.+.|+||.|.. ...+.++.+. ...+ + -+|++||+++- |..+ -+.+..+..+.... .++.++
T Consensus 6 ~f~v~gD~~~~~~~~~~~~~~l~~~-~~~~-d------~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~~~ 75 (294)
T cd00839 6 KFAVFGDMGQNTNNSTNTLDHLEKE-LGNY-D------AILHVGDLAYADGYNNGSRWDTFMRQIEPLASYV--PYMVTP 75 (294)
T ss_pred EEEEEEECCCCCCCcHHHHHHHHhc-cCCc-c------EEEEcCchhhhcCCccchhHHHHHHHHHHHHhcC--CcEEcC
Confidence 48899999952 2333333332 1111 1 47789999964 4321 22333333333333 589999
Q ss_pred CCcchhh
Q 004198 653 GNHEAAD 659 (769)
Q Consensus 653 GNHE~~~ 659 (769)
||||...
T Consensus 76 GNHD~~~ 82 (294)
T cd00839 76 GNHEADY 82 (294)
T ss_pred ccccccc
Confidence 9999754
No 143
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=94.52 E-value=0.041 Score=54.69 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=37.8
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHhhhcCC----CceEEecCCcchhhhhhccCCHHHHHHHhC
Q 004198 616 DYLFLGDYVDRGQHS--LETITLLLALKIEYP----ENVHLIRGNHEAADINALFGFRLECIERMG 675 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s--~e~l~ll~~lk~~~p----~~v~llrGNHE~~~~~~~~g~~~e~~~~~~ 675 (769)
-++||||++|.|+.+ .|.+..+..++..++ -.++.|.||||--.-.. ....+...||.
T Consensus 45 ~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~--~~~~~~v~RF~ 108 (195)
T cd08166 45 IVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEE--DPIESKIRRFE 108 (195)
T ss_pred EEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCC--CcCHHHHHHHH
Confidence 588899999999853 346676666664332 47889999999642111 11245566663
No 144
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=94.01 E-value=0.12 Score=54.93 Aligned_cols=71 Identities=24% Similarity=0.225 Sum_probs=47.1
Q ss_pred CEEEEccCCCCHHH--HHHHHHHhCCCCCCCCCcceeEEEeccccCC-C-CChHHHHHHHHHhhhcCCCceEEecCCcch
Q 004198 582 PVKVFGDLHGQFGD--LMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-G-QHSLETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 582 ~i~viGDiHG~~~~--l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDr-G-~~s~e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
+|+.++|+|-.... ..+.+........+ -+++.|||+|+ . +..-.++..|..|+. |-.+|++.||||.
T Consensus 46 ~iv~lSDlH~~~~~~~~~~~~~~i~~~~~D------livltGD~~~~~~~~~~~~~~~~L~~L~~--~~gv~av~GNHd~ 117 (284)
T COG1408 46 KIVQLSDLHSLPFREEKLALLIAIANELPD------LIVLTGDYVDGDRPPGVAALALFLAKLKA--PLGVFAVLGNHDY 117 (284)
T ss_pred EEEEeehhhhchhhHHHHHHHHHHHhcCCC------EEEEEeeeecCCCCCCHHHHHHHHHhhhc--cCCEEEEeccccc
Confidence 58999999987655 22333332222112 68889999995 4 455555666776654 4579999999987
Q ss_pred hhh
Q 004198 658 ADI 660 (769)
Q Consensus 658 ~~~ 660 (769)
..-
T Consensus 118 ~~~ 120 (284)
T COG1408 118 GVD 120 (284)
T ss_pred ccc
Confidence 543
No 145
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.97 E-value=1.4 Score=48.22 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=72.9
Q ss_pred CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcc----cceEE
Q 004198 162 SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPL----ADAYG 237 (769)
Q Consensus 162 ~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l----~d~~~ 237 (769)
.+.+|+..+.. ....+||+++. .-. ..+.++.+...-.++.+ .+.||++.........- .....
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~--av~---~~P~l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTR--AVA---TGPRLHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCC--eEe---ccCCCCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEE
Confidence 44577777543 34889999987 333 33233444554444444 55699998764332210 03333
Q ss_pred E--e-----cCCCCceEEEeCCCCCCCcccc-------eEEEEe-CCEEEE-EecccCCCCcccCCCcEEEEECCCCcEE
Q 004198 238 L--L-----MHRNGQWEWTLAPGVAPSPRYQ-------HAAVFV-GARLHV-TGGALRGGRAIEGEAAVAVLDTAAGVWL 301 (769)
Q Consensus 238 l--d-----~~~~~~W~W~~~~~~~P~~R~~-------hs~~~~-~~~i~V-~GG~~~~~~~~~~~~~v~~yd~~t~~W~ 301 (769)
+ + ......|.|..++. +|..+.. .+-+++ +.+|+| .-|.. ...+.||+++.+|+
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~~~~W~ 212 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTESHEWR 212 (342)
T ss_pred eccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcCCccee
Confidence 3 3 13467899999876 3444332 344455 777887 33311 24899999999999
Q ss_pred eccCC
Q 004198 302 DRNGL 306 (769)
Q Consensus 302 ~~~~~ 306 (769)
++..-
T Consensus 213 ~~GdW 217 (342)
T PF07893_consen 213 KHGDW 217 (342)
T ss_pred eccce
Confidence 98654
No 146
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.54 E-value=2.2 Score=46.76 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=73.9
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCC
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~ 124 (769)
+.+|+..+.. ..+.+||..+..-..++.. +.+...-.++.++++||+..........
T Consensus 76 gskIv~~d~~--------------------~~t~vyDt~t~av~~~P~l---~~pk~~pisv~VG~~LY~m~~~~~~~~~ 132 (342)
T PF07893_consen 76 GSKIVAVDQS--------------------GRTLVYDTDTRAVATGPRL---HSPKRCPISVSVGDKLYAMDRSPFPEPA 132 (342)
T ss_pred CCeEEEEcCC--------------------CCeEEEECCCCeEeccCCC---CCCCcceEEEEeCCeEEEeeccCccccc
Confidence 7788888663 2478899999988766543 3444455777789999999875322111
Q ss_pred ----cCcEEEE--E------ccCCcceEEEeeecCCCCCCccc-------cEEEEECCcEEEE-EecCCCCCccCceeEE
Q 004198 125 ----TDDLYVL--D------LTNDKFKWHRVVVQGQGPGPRYG-------HVMDLVSQRYLVS-VSGNDGKRVLSDAWAL 184 (769)
Q Consensus 125 ----~~dl~~~--d------~~t~~~~W~~~~~~g~~p~~R~~-------hs~~~~~~~~l~v-~GG~~~~~~~~dv~~~ 184 (769)
...++++ + .....|.|+.++. +|-.+.. .+.+++++..|+| .-|.. .-.+.|
T Consensus 133 ~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysf 204 (342)
T PF07893_consen 133 GRPDFPCFEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSF 204 (342)
T ss_pred cCccceeEEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEE
Confidence 0144455 3 1234589999853 3333322 2233334556666 22211 248999
Q ss_pred eCCCCCceEEEcCC
Q 004198 185 DTAQKPYVWQRLNP 198 (769)
Q Consensus 185 d~~~~~~~W~~v~~ 198 (769)
|+++. +|+++-.
T Consensus 205 Dt~~~--~W~~~Gd 216 (342)
T PF07893_consen 205 DTESH--EWRKHGD 216 (342)
T ss_pred EcCCc--ceeeccc
Confidence 99998 9999843
No 147
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=93.46 E-value=0.14 Score=53.28 Aligned_cols=65 Identities=32% Similarity=0.337 Sum_probs=41.6
Q ss_pred EEEEccCCCCH---------HHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChH-----HHHHHHHHhhhcCCCce
Q 004198 583 VKVFGDLHGQF---------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-----ETITLLLALKIEYPENV 648 (769)
Q Consensus 583 i~viGDiHG~~---------~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~-----e~l~ll~~lk~~~p~~v 648 (769)
|+.++|+||.+ ..|.++++.......+ .-+|..||+++..+.+. .++..|.++. -.
T Consensus 3 i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~-----~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g-----~d 72 (252)
T cd00845 3 ILHTNDLHGHFEPAGGVGGAARLATLIKEERAENEN-----TLLLDAGDNFDGSPPSTATKGEANIELMNALG-----YD 72 (252)
T ss_pred EEEecccccCccccCCcCCHHHHHHHHHHHHhcCCC-----eEEEeCCccCCCccchhccCCcHHHHHHHhcC-----CC
Confidence 78899999887 5566666665432111 14566999999877643 4555554442 23
Q ss_pred EEecCCcch
Q 004198 649 HLIRGNHEA 657 (769)
Q Consensus 649 ~llrGNHE~ 657 (769)
++..||||.
T Consensus 73 ~~~~GNHe~ 81 (252)
T cd00845 73 AVTIGNHEF 81 (252)
T ss_pred EEeeccccc
Confidence 345699996
No 148
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=92.97 E-value=0.4 Score=45.06 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=28.7
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhh
Q 004198 616 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~ 659 (769)
.+.+|||+.-.-..--+...++..| |+++++++||||-.-
T Consensus 48 ~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~ 87 (186)
T COG4186 48 VLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCH 87 (186)
T ss_pred eEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCc
Confidence 6788999987554444545555444 589999999999644
No 149
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=92.90 E-value=0.14 Score=51.44 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=42.5
Q ss_pred CCEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHH-------------------------H
Q 004198 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI-------------------------T 635 (769)
Q Consensus 581 ~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l-------------------------~ 635 (769)
..|..++|.||+++.|.++.+.+.-...+ -++|+||++-....+-|-. .
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D------~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPD------AVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-S------EEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCC------EEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 35899999999999999988765322222 6899999997665444433 2
Q ss_pred HHHHhhhcCCCceEEecCCcchhh
Q 004198 636 LLLALKIEYPENVHLIRGNHEAAD 659 (769)
Q Consensus 636 ll~~lk~~~p~~v~llrGNHE~~~ 659 (769)
-++..--..+--+++|+||||...
T Consensus 80 ~ff~~L~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 80 KFFRILGELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp HHHHHHHCC-SEEEEE--TTS-SH
T ss_pred HHHHHHHhcCCcEEEecCCCCchH
Confidence 333333345568999999999843
No 150
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=92.60 E-value=0.39 Score=48.31 Aligned_cols=72 Identities=22% Similarity=0.256 Sum_probs=50.3
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEecccc--CCCCChHHHHH-HHHHhhhcCCCceEEecCCcchh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYV--DRGQHSLETIT-LLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~v--DrG~~s~e~l~-ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
.+..+.|+||.+..+.++++.......+ -+++.||+. ++|+.-.-... .+..++. ....++.+.||-|..
T Consensus 5 kil~vtDlHg~~~~~~k~~~~~~~~~~D------~lviaGDlt~~~~~~~~~~~~~~~~e~l~~-~~~~v~avpGNcD~~ 77 (226)
T COG2129 5 KILAVTDLHGSEDSLKKLLNAAADIRAD------LLVIAGDLTYFHFGPKEVAEELNKLEALKE-LGIPVLAVPGNCDPP 77 (226)
T ss_pred eEEEEeccccchHHHHHHHHHHhhccCC------EEEEecceehhhcCchHHHHhhhHHHHHHh-cCCeEEEEcCCCChH
Confidence 5889999999999999998887643332 567799999 87764322221 1334432 336899999999876
Q ss_pred hh
Q 004198 659 DI 660 (769)
Q Consensus 659 ~~ 660 (769)
.+
T Consensus 78 ~v 79 (226)
T COG2129 78 EV 79 (226)
T ss_pred HH
Confidence 54
No 151
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=92.39 E-value=0.44 Score=49.92 Aligned_cols=42 Identities=26% Similarity=0.447 Sum_probs=25.3
Q ss_pred eEEEeccccCCCCChH-----HHHHHHHHhhhcCC--CceEEecCCcch
Q 004198 616 DYLFLGDYVDRGQHSL-----ETITLLLALKIEYP--ENVHLIRGNHEA 657 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s~-----e~l~ll~~lk~~~p--~~v~llrGNHE~ 657 (769)
-+||+||++|.|.... +-+..+..+-...+ ..++.|.||||.
T Consensus 48 ~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDi 96 (257)
T cd08163 48 STIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDI 96 (257)
T ss_pred EEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCccc
Confidence 5788999999997532 11222222110111 358999999996
No 152
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.87 E-value=23 Score=39.01 Aligned_cols=195 Identities=18% Similarity=0.281 Sum_probs=103.2
Q ss_pred CCcEEEEECCCCc--EEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCC
Q 004198 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (769)
Q Consensus 74 ~~dv~~yD~~~~~--W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~ 151 (769)
.+.++.+|+.+.+ |....... .....-....-+++||+....+ .+|+||..+.+..|..-... .
T Consensus 77 ~G~i~A~d~~~g~~~W~~~~~~~---~~~~~~~~~~~~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~~~---~- 142 (370)
T COG1520 77 DGNIFALNPDTGLVKWSYPLLGA---VAQLSGPILGSDGKIYVGSWDG-------KLYALDASTGTLVWSRNVGG---S- 142 (370)
T ss_pred CCcEEEEeCCCCcEEecccCcCc---ceeccCceEEeCCeEEEecccc-------eEEEEECCCCcEEEEEecCC---C-
Confidence 3479999999886 97543310 0111111222267777755432 79999998877889887532 1
Q ss_pred CccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCc
Q 004198 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (769)
Q Consensus 152 ~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~ 231 (769)
++..-.. +..+..+|+.. ..+.++++|..+....|..-...+ . ..+.. ......++.+|+...- .
T Consensus 143 ~~~~~~~-v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~-~~~~~~~~~vy~~~~~-----~ 207 (370)
T COG1520 143 PYYASPP-VVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP-L-SLSIY-GSPAIASGTVYVGSDG-----Y 207 (370)
T ss_pred eEEecCc-EEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc-c-ccccc-cCceeecceEEEecCC-----C
Confidence 3333333 44443544432 235689999998888998654432 1 12222 2222567777774321 1
Q ss_pred ccceEEEecCCCCceEEEeC----CCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCC--cEEeccC
Q 004198 232 LADAYGLLMHRNGQWEWTLA----PGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLDRNG 305 (769)
Q Consensus 232 l~d~~~ld~~~~~~W~W~~~----~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~--~W~~~~~ 305 (769)
...++.++.. ++.-.|... .+..... -...+..+.+++-||..... ....+.++|..+. .|+.-..
T Consensus 208 ~~~~~a~~~~-~G~~~w~~~~~~~~~~~~~~---~~~~~~~~~v~v~~~~~~~~----~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 208 DGILYALNAE-DGTLKWSQKVSQTIGRTAIS---TTPAVDGGPVYVDGGVYAGS----YGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cceEEEEEcc-CCcEeeeeeeecccCccccc---ccccccCceEEECCcEEEEe----cCCeEEEEEcCCCceEEEEecc
Confidence 1268888885 455566642 2211110 01223344444444421000 1234788887665 5887654
No 153
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.55 E-value=3.8 Score=43.44 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=72.1
Q ss_pred EEEECccCCCC-CCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCC-ccCceeEEeCCCC
Q 004198 112 VVFQGGIGPAG-HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWALDTAQK 189 (769)
Q Consensus 112 Iyv~GG~~~~~-~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~-~~~dv~~~d~~~~ 189 (769)
|||.|-....+ ..-..+-.||..+ .+|..+- ..-.. .-.++....+..+|+.|-..... ....+-.||.++.
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~--~qW~~~g---~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDN--SQWSSPG---NGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCC--CEeecCC---CCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 34544444333 3567788999999 7899983 33111 22344344566888877554433 4556888999999
Q ss_pred CceEEEcCCC--CCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCC
Q 004198 190 PYVWQRLNPE--GDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPG 253 (769)
Q Consensus 190 ~~~W~~v~~~--~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~ 253 (769)
+|+.+... ...|.+-..-.........+++.|.. ..+ ..-+..||-. +|..+..
T Consensus 75 --~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~dGs-----~W~~i~~ 130 (281)
T PF12768_consen 75 --TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKYDGS-----SWSSIGS 130 (281)
T ss_pred --eeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEEcCC-----ceEeccc
Confidence 99888763 24454422111111233367777765 322 2446666544 6766654
No 154
>PLN02533 probable purple acid phosphatase
Probab=89.99 E-value=0.47 Score=53.54 Aligned_cols=69 Identities=17% Similarity=0.079 Sum_probs=37.8
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCCh---HHHHHHHHHhhhcCCCceEEecCCcchh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS---LETITLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s---~e~l~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
.+.++||+|-. ......++.+.....+ -+|++||+++-+... -+...++..+.... -++.+.||||..
T Consensus 141 ~f~v~GDlG~~-~~~~~tl~~i~~~~pD------~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~--P~m~~~GNHE~~ 211 (427)
T PLN02533 141 KFAVSGDLGTS-EWTKSTLEHVSKWDYD------VFILPGDLSYANFYQPLWDTFGRLVQPLASQR--PWMVTHGNHELE 211 (427)
T ss_pred EEEEEEeCCCC-cccHHHHHHHHhcCCC------EEEEcCccccccchHHHHHHHHHHhhhHhhcC--ceEEeCcccccc
Confidence 48899999632 2222333333221111 477899999754332 11223333333233 478999999975
Q ss_pred h
Q 004198 659 D 659 (769)
Q Consensus 659 ~ 659 (769)
.
T Consensus 212 ~ 212 (427)
T PLN02533 212 K 212 (427)
T ss_pred c
Confidence 3
No 155
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=89.97 E-value=0.48 Score=50.19 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=37.4
Q ss_pred EEEEccCCCCH----------------HHHHHHHHHhCCCCCCCCCcceeEEE--eccccCCCCCh-----------HHH
Q 004198 583 VKVFGDLHGQF----------------GDLMRLFDEYGFPSTAGDITYIDYLF--LGDYVDRGQHS-----------LET 633 (769)
Q Consensus 583 i~viGDiHG~~----------------~~l~~~l~~~~~~~~~~~~~~~~~vf--LGD~vDrG~~s-----------~e~ 633 (769)
|+.++|+||.+ ..|..+++....... +.|+ .||+++..+.+ ..+
T Consensus 3 il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~-------~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~ 75 (277)
T cd07410 3 ILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENP-------NTLLIDNGDTIQGSPLADYYAKIEDGDPHPM 75 (277)
T ss_pred EEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCC-------CeEEEeCCccCCccHHHHHhhhcccCCCChH
Confidence 77889999997 334555655532211 3344 69999865522 234
Q ss_pred HHHHHHhhhcCCCceEEecCCcch
Q 004198 634 ITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 634 l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
+..|..+. --++..||||.
T Consensus 76 ~~~ln~~g-----~d~~~lGNHe~ 94 (277)
T cd07410 76 IAAMNALG-----YDAGTLGNHEF 94 (277)
T ss_pred HHHHHhcC-----CCEEeecccCc
Confidence 55555442 22555699995
No 156
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=89.56 E-value=0.37 Score=55.25 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=36.1
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhh
Q 004198 616 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (769)
++-.+||+.||||.+-.+++.|+.. .+|-+-.||||-.++-
T Consensus 187 hLHIvGDIyDRGp~pd~ImD~Lm~~-----hsvDIQWGNHDIlWMG 227 (640)
T PF06874_consen 187 HLHIVGDIYDRGPRPDKIMDRLMNY-----HSVDIQWGNHDILWMG 227 (640)
T ss_pred heeecccccCCCCChhHHHHHHhcC-----CCccccccchHHHHHH
Confidence 6788999999999999999999975 4899999999976654
No 157
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=89.32 E-value=1.5 Score=44.77 Aligned_cols=70 Identities=24% Similarity=0.336 Sum_probs=43.4
Q ss_pred cCCEEEEccCCCCHHHHH----------------HHHHHh--CCCCCCCCCcceeEEEeccccCCCCC-----hHHHHHH
Q 004198 580 RAPVKVFGDLHGQFGDLM----------------RLFDEY--GFPSTAGDITYIDYLFLGDYVDRGQH-----SLETITL 636 (769)
Q Consensus 580 ~~~i~viGDiHG~~~~l~----------------~~l~~~--~~~~~~~~~~~~~~vfLGD~vDrG~~-----s~e~l~l 636 (769)
.....|+.|+|=-|+.-+ +.+..+ .+.++ ++|++||+-.-.+. ..|+..+
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~-------~lIilGD~KH~~~~~~~~e~~~~~~f 91 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPK-------RLIILGDLKHEFGKSLRQEKEEVREF 91 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCC-------EEEEcCccccccCccccccHHHHHHH
Confidence 467999999996555443 222211 11121 79999999974332 3455555
Q ss_pred HHHhhhcCCCceEEecCCcchhh
Q 004198 637 LLALKIEYPENVHLIRGNHEAAD 659 (769)
Q Consensus 637 l~~lk~~~p~~v~llrGNHE~~~ 659 (769)
+..++.. .++++|||||...
T Consensus 92 ~~~~~~~---evi~i~GNHD~~i 111 (235)
T COG1407 92 LELLDER---EVIIIRGNHDNGI 111 (235)
T ss_pred HHHhccC---cEEEEeccCCCcc
Confidence 5444432 5999999999743
No 158
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=87.66 E-value=0.042 Score=58.83 Aligned_cols=103 Identities=6% Similarity=-0.158 Sum_probs=84.3
Q ss_pred ceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhhccc
Q 004198 614 YIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCL 693 (769)
Q Consensus 614 ~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~~l 693 (769)
+...|+|+++++++.+.++.+.+.+..++.+-.+.-..++||+. .++++++.+......+...+|...++.++.+
T Consensus 48 ~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~-----~~~~R~~LVlp~l~S~riyvid~~~ep~~~~ 122 (476)
T KOG0918|consen 48 YLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGD-----SSFKRRYLVLPSLNSGRIYVIDVKTEPRKPS 122 (476)
T ss_pred ceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccC-----cchhhhheeecccccCceEEEEeccCcCccc
Confidence 34789999999999999999999999999988899999999954 4556666666666666777888889999888
Q ss_pred cceEEEeceEEEEcCCCCCCCCChHHhhh
Q 004198 694 PLAALIEKKIICMHGGIGRSIHSVEQIEK 722 (769)
Q Consensus 694 P~~~~i~~~i~~vHgGi~~~~~~~~~i~~ 722 (769)
+...+.. +++|.||+..|...+...+.+
T Consensus 123 l~k~i~~-~il~~~~l~~Pht~hcla~g~ 150 (476)
T KOG0918|consen 123 LEKTIDP-DILEKTGLACPHTSHCLASGN 150 (476)
T ss_pred eeeeech-hhHhhcCCcCCcccccccCCC
Confidence 8887776 899999999998766655543
No 159
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=87.39 E-value=1.5 Score=48.92 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=32.4
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcC---CCceEEecCCcchhh
Q 004198 616 DYLFLGDYVDRGQHSLETITLLLALKIEY---PENVHLIRGNHEAAD 659 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s~e~l~ll~~lk~~~---p~~v~llrGNHE~~~ 659 (769)
-+|+-||+.|+..-|.+++.++...-.+. .-.|++|.||||...
T Consensus 43 ~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 43 FVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred EEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 47889999999988888776554333222 237999999999754
No 160
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=86.69 E-value=19 Score=39.75 Aligned_cols=225 Identities=12% Similarity=0.039 Sum_probs=104.9
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEE-CccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCC
Q 004198 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQ-GGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (769)
Q Consensus 74 ~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~-GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~ 152 (769)
...+|.+|+.+.+=++|+... .....+-..+.-++.+|++ .+ ..|+.+|+.+. +=+.+- ..|..
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~~~~~Yv~~~--------~~l~~vdL~T~--e~~~vy---~~p~~ 123 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDDRALYYVKNG--------RSLRRVDLDTL--EERVVY---EVPDD 123 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETT--------TEEEEEETTT----EEEEE---E--TT
T ss_pred CcceEEEEcccCEEEECccCC--CCCccceEEecCCCeEEEEECC--------CeEEEEECCcC--cEEEEE---ECCcc
Confidence 367999999999999998641 1222222222224566554 33 46899999883 333332 23333
Q ss_pred ccccEEEE-ECCcEEEEEecC----CC--------------CCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEE
Q 004198 153 RYGHVMDL-VSQRYLVSVSGN----DG--------------KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASA 213 (769)
Q Consensus 153 R~~hs~~~-~~~~~l~v~GG~----~~--------------~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~ 213 (769)
-.+....+ -.+...++ |=. +. ....+.+...|+.++ +.+.+-.. ..-.+|.-..
T Consensus 124 ~~g~gt~v~n~d~t~~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG--~~~~v~~~----~~wlgH~~fs 196 (386)
T PF14583_consen 124 WKGYGTWVANSDCTKLV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG--ERKVVFED----TDWLGHVQFS 196 (386)
T ss_dssp EEEEEEEEE-TTSSEEE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEE----SS-EEEEEEE
T ss_pred cccccceeeCCCccEEE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC--ceeEEEec----CccccCcccC
Confidence 33322222 22222222 211 00 123456777888887 66666433 2233466555
Q ss_pred ecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEE
Q 004198 214 RSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVL 293 (769)
Q Consensus 214 ~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~y 293 (769)
-.+..+++|+-.......-.-+|..+.+....| ++....+.-..+|---..++..+.+=+...++. .-.+..|
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~---~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~----~~~i~~~ 269 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK---KVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ----DFWIAGY 269 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---E---ESS---TTEEEEEEEE-TTSS-EEEEEEETTT------EEEEEE
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcce---eeecCCCCcccccccccCCCCEEEEEeecCCCC----ceEEEee
Confidence 566677777544333333457899997765332 233223455566666555554443323322221 2347889
Q ss_pred ECCCCcEEeccCCccCCCCCCCCCCCCCccCcccccceEEEEeCCEEEEEcCcC
Q 004198 294 DTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK 347 (769)
Q Consensus 294 d~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~~~~iyv~GG~~ 347 (769)
|+++.+=+.+..+ +++.|-....+++|+|-=|.+
T Consensus 270 d~~t~~~~~~~~~--------------------p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 270 DPDTGERRRLMEM--------------------PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -TTT--EEEEEEE---------------------SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCCCceEEEeC--------------------CceeeeEEcCCCCEEEecCCC
Confidence 9988754444333 678888888899998876654
No 161
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=84.73 E-value=52 Score=34.03 Aligned_cols=121 Identities=20% Similarity=0.299 Sum_probs=59.5
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEE-E-CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCC
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAA-V-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~-~-~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~ 152 (769)
+.+++||+.+++-...-..+. .++ +++. - +..+|+.++. .+.+++||..+ .+...... ....+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~--~~~---~l~~~~dg~~l~~~~~~------~~~v~~~d~~~--~~~~~~~~--~~~~~ 75 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQ--RPR---GITLSKDGKLLYVCASD------SDTIQVIDLAT--GEVIGTLP--SGPDP 75 (300)
T ss_pred CEEEEEECCCCceEEEEECCC--CCC---ceEECCCCCEEEEEECC------CCeEEEEECCC--CcEEEecc--CCCCc
Confidence 578889998876443322211 122 2222 2 3467776642 34589999987 33433211 11111
Q ss_pred ccccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEccc
Q 004198 153 RYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGR 225 (769)
Q Consensus 153 R~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~ 225 (769)
..++.. .++.+|+.++.+ +.+.+||+.+.. .-..+.. ....+.+....++.+++++..
T Consensus 76 ---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~-~~~~~~~------~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 76 ---ELFALHPNGKILYIANEDD-----NLVTVIDIETRK-VLAEIPV------GVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred ---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCe-EEeEeeC------CCCcceEEECCCCCEEEEEec
Confidence 223233 334566654432 358889987751 1111211 111234445567777776643
No 162
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=84.48 E-value=1.8 Score=45.24 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=38.3
Q ss_pred EEEEccCCCCH----------HHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCCh-----HHHHHHHHHhhhcCCCc
Q 004198 583 VKVFGDLHGQF----------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPEN 647 (769)
Q Consensus 583 i~viGDiHG~~----------~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s-----~e~l~ll~~lk~~~p~~ 647 (769)
|+.+.|+||++ ..+..+++.....+. .-+|..||+++..+.+ ..++..+-.+. -.
T Consensus 3 il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~------~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~d 72 (257)
T cd07408 3 ILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDN------DLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----YD 72 (257)
T ss_pred EEEeccCcccccCCCCccccHHHHHHHHHHHHhcCC------EEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----Cc
Confidence 67889999985 345566666532211 1456699999876533 23334443332 23
Q ss_pred eEEecCCcch
Q 004198 648 VHLIRGNHEA 657 (769)
Q Consensus 648 v~llrGNHE~ 657 (769)
+ +..||||.
T Consensus 73 ~-~~~GNHef 81 (257)
T cd07408 73 A-VTPGNHEF 81 (257)
T ss_pred E-Eccccccc
Confidence 4 45699995
No 163
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=83.66 E-value=1.6 Score=46.48 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=40.2
Q ss_pred EEEEccCCCCHHH--------------HHHHHHHhCCCCCCCCCcceeEEEeccccCCCCC-h-----HHHHHHHHHhhh
Q 004198 583 VKVFGDLHGQFGD--------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-S-----LETITLLLALKI 642 (769)
Q Consensus 583 i~viGDiHG~~~~--------------l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~-s-----~e~l~ll~~lk~ 642 (769)
|+.+.|+||++.. |..+++........ .-+|..||++...+. + ..++.++.++..
T Consensus 3 il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~ 77 (288)
T cd07412 3 ILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPN-----SLFVSAGDLIGASPFESALLQDEPTIEALNAMGV 77 (288)
T ss_pred EEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCC-----eEEEeCCcccccccchhhcccCCcHHHHHHhhCC
Confidence 7788999998653 55566665432111 145669999986654 2 245566655532
Q ss_pred cCCCceEEecCCcch
Q 004198 643 EYPENVHLIRGNHEA 657 (769)
Q Consensus 643 ~~p~~v~llrGNHE~ 657 (769)
. .+..||||.
T Consensus 78 ----D-a~t~GNHef 87 (288)
T cd07412 78 ----D-ASAVGNHEF 87 (288)
T ss_pred ----e-eeeeccccc
Confidence 3 455699995
No 164
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=83.64 E-value=2.2 Score=44.98 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=37.3
Q ss_pred EEEEccCCCC--H--HHHHHHHHHhCC-CCCCCCCcceeEEEecccc-CCCCCh------HHHHHHHHH-hhhcCCCceE
Q 004198 583 VKVFGDLHGQ--F--GDLMRLFDEYGF-PSTAGDITYIDYLFLGDYV-DRGQHS------LETITLLLA-LKIEYPENVH 649 (769)
Q Consensus 583 i~viGDiHG~--~--~~l~~~l~~~~~-~~~~~~~~~~~~vfLGD~v-DrG~~s------~e~l~ll~~-lk~~~p~~v~ 649 (769)
+.++||.-.. . .++.+.+..... ...+ -+|++||+| +-|... .+.+..++. +. ..-.++
T Consensus 3 f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~d------fvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~--~~~P~~ 74 (277)
T cd07378 3 FLALGDWGGGGTAGQKAVAKAMAKVAAELGPD------FILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPS--LQVPWY 74 (277)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHHHHhcCCC------EEEeCCCccccCCCCCCcchHHHHHHHHHccchh--hcCCeE
Confidence 7899997553 1 344444433221 1111 478899997 555322 122222222 21 234699
Q ss_pred EecCCcchh
Q 004198 650 LIRGNHEAA 658 (769)
Q Consensus 650 llrGNHE~~ 658 (769)
.+.||||..
T Consensus 75 ~v~GNHD~~ 83 (277)
T cd07378 75 LVLGNHDYS 83 (277)
T ss_pred EecCCcccC
Confidence 999999975
No 165
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=82.70 E-value=2.5 Score=46.69 Aligned_cols=42 Identities=33% Similarity=0.430 Sum_probs=30.7
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHhhhcCCC----ceEEecCCcch
Q 004198 616 DYLFLGDYVDRGQHS--LETITLLLALKIEYPE----NVHLIRGNHEA 657 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s--~e~l~ll~~lk~~~p~----~v~llrGNHE~ 657 (769)
-++||||++|-|... -|--.....+|..|+. .++.+.||||-
T Consensus 96 vvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 96 VVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred EEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 467799999988753 4445556666655554 78899999996
No 166
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=82.00 E-value=2.8 Score=44.02 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=20.9
Q ss_pred EEEeccccCCCCCh-----HHHHHHHHHhhhcCCCceEEecCCcch
Q 004198 617 YLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 617 ~vfLGD~vDrG~~s-----~e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
+|..||+++..+.+ ..++..+..+ + --.+. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g-~da~~-GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL----G-VDAMV-GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh----C-CeEEe-ccccc
Confidence 34589999876543 2444444443 2 23344 99995
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=81.91 E-value=43 Score=37.24 Aligned_cols=153 Identities=17% Similarity=0.197 Sum_probs=76.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCC
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~ 124 (769)
.-.+.+.+|.++ +-.+|..|-.+|. +++..--.-.|......+.-|...++++|.
T Consensus 224 ~~plllvaG~d~-----------------~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------ 278 (514)
T KOG2055|consen 224 TAPLLLVAGLDG-----------------TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------ 278 (514)
T ss_pred CCceEEEecCCC-----------------cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc------
Confidence 457888999763 2345666666655 343321000111112222223447777775
Q ss_pred cCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCC
Q 004198 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (769)
Q Consensus 125 ~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~ 204 (769)
..-+|.||+.+ .+-.++.....++ .+.-+...+.....++++-|+.+. +..+...++ .|..--.. .
T Consensus 279 rky~ysyDle~--ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G~-----I~lLhakT~--eli~s~Ki----e 344 (514)
T KOG2055|consen 279 RKYLYSYDLET--AKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNGH-----IHLLHAKTK--ELITSFKI----E 344 (514)
T ss_pred ceEEEEeeccc--cccccccCCCCcc-cchhheeEecCCCCeEEEcccCce-----EEeehhhhh--hhhheeee----c
Confidence 34589999998 5577773222222 222222222233346666666553 555666666 44221111 2
Q ss_pred cccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCC
Q 004198 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN 243 (769)
Q Consensus 205 ~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~ 243 (769)
.+...........+|+++||. ..+|.+|....
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGT-------GEVYVWNLRQN 376 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCC-------ceEEEEecCCc
Confidence 222222222334577887774 36788887655
No 168
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=81.78 E-value=29 Score=31.87 Aligned_cols=86 Identities=13% Similarity=0.166 Sum_probs=53.7
Q ss_pred EEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCC-CccCceeEE
Q 004198 106 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWAL 184 (769)
Q Consensus 106 ~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~-~~~~dv~~~ 184 (769)
+++++.+|..... .....+.+.+||+.+ .+|..+..............++.+++ +|-++.-.... ...-++|++
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~--E~f~~i~~P~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRS--EKFRFIKLPEDPYSSDCSSTLIEYKG-KLALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCC--ceEEEEEeeeeeccccCccEEEEeCC-eEEEEEecCCCCcceEEEEEe
Confidence 4577878877765 333457799999999 55877753212344556667767776 44444333322 234688998
Q ss_pred e-CCCCCceEEEcCC
Q 004198 185 D-TAQKPYVWQRLNP 198 (769)
Q Consensus 185 d-~~~~~~~W~~v~~ 198 (769)
+ .++. +|++...
T Consensus 77 eD~~k~--~Wsk~~~ 89 (129)
T PF08268_consen 77 EDYEKQ--EWSKKHI 89 (129)
T ss_pred eccccc--eEEEEEE
Confidence 4 5555 8988754
No 169
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.09 E-value=99 Score=34.61 Aligned_cols=94 Identities=12% Similarity=0.211 Sum_probs=48.0
Q ss_pred CCcEEEecCCCCCCccc--ccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEE
Q 004198 84 TRKWTRIRPAGEPPSPR--AAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 161 (769)
Q Consensus 84 ~~~W~~l~~~g~~P~~R--~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~ 161 (769)
-.+|++..........+ ...++...++..|++|-.+ .+|-......+|+++.....+|.. ++.....
T Consensus 119 G~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G---------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~ 187 (398)
T PLN00033 119 GKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPA---------ILLHTSDGGETWERIPLSPKLPGE--PVLIKAT 187 (398)
T ss_pred CCCceECccCcccccccccceeeeEEECCEEEEEcCce---------EEEEEcCCCCCceECccccCCCCC--ceEEEEE
Confidence 35788764221111112 2344555677888886431 445444444679998643233433 3334445
Q ss_pred CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEc
Q 004198 162 SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 196 (769)
Q Consensus 162 ~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v 196 (769)
.+...++.|.. ..+++-+-... .|+.+
T Consensus 188 ~~~~~~ivg~~------G~v~~S~D~G~--tW~~~ 214 (398)
T PLN00033 188 GPKSAEMVTDE------GAIYVTSNAGR--NWKAA 214 (398)
T ss_pred CCCceEEEecc------ceEEEECCCCC--CceEc
Confidence 55456666631 22444433333 79886
No 170
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.59 E-value=8 Score=36.23 Aligned_cols=104 Identities=28% Similarity=0.359 Sum_probs=70.6
Q ss_pred EEEEccCCC--CHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhh
Q 004198 583 VKVFGDLHG--QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (769)
Q Consensus 583 i~viGDiHG--~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (769)
+.++||+|= ...+|-.-|+++-.|..- ..++++|++. |.|++++|..+. ..++++||--|..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki-----~hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~-- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKI-----QHILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN-- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCce-----eEEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc--
Confidence 578999985 345565666666566442 1789999975 789999998875 6999999977652
Q ss_pred hhccCCHHHHHHHhCCCCchhhhHHHhHhhccccceEEEeceEEEEcCCCCCCCCChHHhhhccCCccc
Q 004198 661 NALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM 729 (769)
Q Consensus 661 ~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i~~~i~~vHgGi~~~~~~~~~i~~~~rp~~~ 729 (769)
.+|.+.. ...+-.-||-|+||-.--.+.+.+.+..+.|-++.
T Consensus 67 -----------~~yP~~k----------------vvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldv 108 (183)
T KOG3325|consen 67 -----------LKYPENK----------------VVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDV 108 (183)
T ss_pred -----------ccCCccc----------------eEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCC
Confidence 2343320 00111137999999876556778888888886654
No 171
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=80.22 E-value=6.4 Score=34.39 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=31.8
Q ss_pred chHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeee
Q 004198 528 QGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQL 579 (769)
Q Consensus 528 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~ 579 (769)
..+++.|++.+-+.+ .|....+..|+.++.++|+++|++++|
T Consensus 54 ~efv~~mie~FK~~K----------~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 54 LEFVKAMIEWFKNQK----------KLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp HHHHHHHHHHHHCT--------------HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred HHHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 456788888877553 477888999999999999999999985
No 172
>PRK13684 Ycf48-like protein; Provisional
Probab=79.08 E-value=1e+02 Score=33.55 Aligned_cols=174 Identities=16% Similarity=0.260 Sum_probs=80.8
Q ss_pred CcEEEecCCCCCCcccccceEEEEC-CEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECC
Q 004198 85 RKWTRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQ 163 (769)
Q Consensus 85 ~~W~~l~~~g~~P~~R~~hs~~~~~-~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~ 163 (769)
.+|+++...-. .+...+....++ +.+|+.|.. ..+++ ......+|+++.. +..-.-+.+....+
T Consensus 119 ~tW~~~~~~~~--~~~~~~~i~~~~~~~~~~~g~~-------G~i~~--S~DgG~tW~~~~~----~~~g~~~~i~~~~~ 183 (334)
T PRK13684 119 KNWTRIPLSEK--LPGSPYLITALGPGTAEMATNV-------GAIYR--TTDGGKNWEALVE----DAAGVVRNLRRSPD 183 (334)
T ss_pred CCCeEccCCcC--CCCCceEEEEECCCcceeeecc-------ceEEE--ECCCCCCceeCcC----CCcceEEEEEECCC
Confidence 47998853211 122223344444 356665542 11333 2233357998842 22223344444455
Q ss_pred cEEEEEecCCCCCccCceeEE-eCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEe-cC
Q 004198 164 RYLVSVSGNDGKRVLSDAWAL-DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLL-MH 241 (769)
Q Consensus 164 ~~l~v~GG~~~~~~~~dv~~~-d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld-~~ 241 (769)
+.++++|. .+ .++.- |-... +|+.+... ..+..+++....++.+++.|... ...+. .+
T Consensus 184 g~~v~~g~-~G-----~i~~s~~~gg~--tW~~~~~~----~~~~l~~i~~~~~g~~~~vg~~G--------~~~~~s~d 243 (334)
T PRK13684 184 GKYVAVSS-RG-----NFYSTWEPGQT--AWTPHQRN----SSRRLQSMGFQPDGNLWMLARGG--------QIRFNDPD 243 (334)
T ss_pred CeEEEEeC-Cc-----eEEEEcCCCCC--eEEEeeCC----CcccceeeeEcCCCCEEEEecCC--------EEEEccCC
Confidence 45555443 22 23322 33333 79887542 34444555556778888876431 11221 22
Q ss_pred CCCceEEEeCCCCCCCccc-ceEEEEe-CCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccC
Q 004198 242 RNGQWEWTLAPGVAPSPRY-QHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 305 (769)
Q Consensus 242 ~~~~W~W~~~~~~~P~~R~-~hs~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 305 (769)
...+|+ ..........+ -+++++. ++.+++.|.. ..++.-.-...+|+.+..
T Consensus 244 ~G~sW~--~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~----------G~v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 244 DLESWS--KPIIPEITNGYGYLDLAYRTPGEIWAGGGN----------GTLLVSKDGGKTWEKDPV 297 (334)
T ss_pred CCCccc--cccCCccccccceeeEEEcCCCCEEEEcCC----------CeEEEeCCCCCCCeECCc
Confidence 223444 33211011112 2333333 5678887752 124433344579999764
No 173
>PRK04792 tolB translocation protein TolB; Provisional
Probab=78.81 E-value=1.2e+02 Score=34.37 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=74.7
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCcc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~ 154 (769)
.++|.+|+.+++-+.+... +..-...+...-++.|++....+ ...++|++|+.+ .+..++... .. .
T Consensus 242 ~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~t--g~~~~lt~~---~~--~ 307 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGKKLALVLSKD----GQPEIYVVDIAT--KALTRITRH---RA--I 307 (448)
T ss_pred cEEEEEECCCCCeEEecCC---CCCcCCeeECCCCCEEEEEEeCC----CCeEEEEEECCC--CCeEECccC---CC--C
Confidence 4699999998887777543 11111122222345666553321 135799999988 456666321 11 1
Q ss_pred ccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCccc
Q 004198 155 GHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (769)
Q Consensus 155 ~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~ 233 (769)
....... +++.|++.....+ ..++|.+|+.++ ++..+...+. .........+|..+++.+.... ..
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g--~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~g---~~ 374 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASG--KVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTNG---KF 374 (448)
T ss_pred ccceEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEEecCCC-----CCcCeeECCCCCEEEEEEecCC---ce
Confidence 1112222 3335554433222 257999999887 7777753211 1112334567655555443321 24
Q ss_pred ceEEEecCCC
Q 004198 234 DAYGLLMHRN 243 (769)
Q Consensus 234 d~~~ld~~~~ 243 (769)
++|.++....
T Consensus 375 ~I~~~dl~~g 384 (448)
T PRK04792 375 NIARQDLETG 384 (448)
T ss_pred EEEEEECCCC
Confidence 6888887654
No 174
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=78.65 E-value=83 Score=32.22 Aligned_cols=191 Identities=12% Similarity=0.057 Sum_probs=101.3
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccccceEEEE--CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeec--CCC
Q 004198 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ--GQG 149 (769)
Q Consensus 74 ~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~--g~~ 149 (769)
.+.++++|+.+.+-..+...+ ..+++.. ++.+|+.... .+.++|+.+ .+++.+... +..
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~--g~~~~~~~~~~~~~ 83 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRLYVADSG--------GIAVVDPDT--GKVTVLADLPDGGV 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEEEEEETT--------CEEEEETTT--TEEEEEEEEETTCS
T ss_pred CCEEEEEECCCCeEEEEecCC-------CceEEEEccCCEEEEEEcC--------ceEEEecCC--CcEEEEeeccCCCc
Confidence 468999999998877655432 2444444 5788886542 257779888 567777542 111
Q ss_pred CCCccccEEEEECCcEEEEEecCCCC-Ccc--CceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCC-EEEEEccc
Q 004198 150 PGPRYGHVMDLVSQRYLVSVSGNDGK-RVL--SDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDG-MFLLCGGR 225 (769)
Q Consensus 150 p~~R~~hs~~~~~~~~l~v~GG~~~~-~~~--~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g-~l~v~GG~ 225 (769)
+..+.. -+++..++.+|+.--.... ... ..+|+++.. . +...+... . ..-...+...++ .||+.-
T Consensus 84 ~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--~~~~~~~~----~-~~pNGi~~s~dg~~lyv~d-- 152 (246)
T PF08450_consen 84 PFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G--KVTVVADG----L-GFPNGIAFSPDGKTLYVAD-- 152 (246)
T ss_dssp CTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--EEEEEEEE----E-SSEEEEEEETTSSEEEEEE--
T ss_pred ccCCCc-eEEEcCCCCEEEEecCCCccccccccceEEECCC-C--eEEEEecC----c-ccccceEECCcchheeecc--
Confidence 233333 3445555677774332221 112 569999998 4 44444322 1 111334444555 577632
Q ss_pred CCCCCcccceEEEecCCCCc-eEEEeCC-CCCCCcccceEEEEe-CCEEEEEecccCCCCcccCCCcEEEEECCCCcEEe
Q 004198 226 DASGAPLADAYGLLMHRNGQ-WEWTLAP-GVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLD 302 (769)
Q Consensus 226 ~~~~~~l~d~~~ld~~~~~~-W~W~~~~-~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~ 302 (769)
...+.+|+|+....+. +.-...- .......+--.+++- ++.|||..- . ...|++||++...-..
T Consensus 153 ----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~--~-------~~~I~~~~p~G~~~~~ 219 (246)
T PF08450_consen 153 ----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW--G-------GGRIVVFDPDGKLLRE 219 (246)
T ss_dssp ----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE--T-------TTEEEEEETTSCEEEE
T ss_pred ----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc--C-------CCEEEEECCCccEEEE
Confidence 1235588898865432 3322211 111111233455553 688998732 1 2469999999665555
Q ss_pred ccC
Q 004198 303 RNG 305 (769)
Q Consensus 303 ~~~ 305 (769)
+..
T Consensus 220 i~~ 222 (246)
T PF08450_consen 220 IEL 222 (246)
T ss_dssp EE-
T ss_pred EcC
Confidence 543
No 175
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=77.74 E-value=78 Score=31.42 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=54.6
Q ss_pred CEEEEECccCCCCCCcCcEEEEEccCCcceEE-EeeecCCCCC-CccccEEEEEC-CcEEEEEecCCCCCccCceeEEeC
Q 004198 110 TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWH-RVVVQGQGPG-PRYGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDT 186 (769)
Q Consensus 110 ~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~-~~~~~g~~p~-~R~~hs~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~ 186 (769)
+++|+|=| +..|+|+..+.....- .+..-+-++. .... ++.... ++.+|+|.| +..|+||.
T Consensus 63 ~~~yfFkg--------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg-------~~y~ry~~ 126 (194)
T cd00094 63 GKIYFFKG--------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKG-------DKYWRYDE 126 (194)
T ss_pred CEEEEECC--------CEEEEEcCcccccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeC-------CEEEEEeC
Confidence 78999876 3488888664111111 1111011111 1122 333343 568999988 56788887
Q ss_pred CCCCceEEE-----cCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCC
Q 004198 187 AQKPYVWQR-----LNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN 243 (769)
Q Consensus 187 ~~~~~~W~~-----v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~ 243 (769)
.++ +... +... -.-.+..-.++....++.+|+|-| +..|+|+..+.
T Consensus 127 ~~~--~v~~~yP~~i~~~-w~g~p~~idaa~~~~~~~~yfF~g--------~~y~~~d~~~~ 177 (194)
T cd00094 127 KTQ--KMDPGYPKLIETD-FPGVPDKVDAAFRWLDGYYYFFKG--------DQYWRFDPRSK 177 (194)
T ss_pred CCc--cccCCCCcchhhc-CCCcCCCcceeEEeCCCcEEEEEC--------CEEEEEeCccc
Confidence 654 2110 1000 001222234555556688999876 46788887643
No 176
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=77.68 E-value=8.2 Score=43.30 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=44.5
Q ss_pred CEEEEccCCC-CH----HHHHHHHHHhCCCCCCCCCcceeEEE-eccccCC-CC-----------ChHHHHHHHHHhhhc
Q 004198 582 PVKVFGDLHG-QF----GDLMRLFDEYGFPSTAGDITYIDYLF-LGDYVDR-GQ-----------HSLETITLLLALKIE 643 (769)
Q Consensus 582 ~i~viGDiHG-~~----~~l~~~l~~~~~~~~~~~~~~~~~vf-LGD~vDr-G~-----------~s~e~l~ll~~lk~~ 643 (769)
.+.+++|+|= .. ..+.++++-++-+.+ .....+|+. -||.||- |- +..|-...+..+--+
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~--~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~ 304 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGD--LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQ 304 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcc--cccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhh
Confidence 3789999996 22 334444454443321 222336666 7799993 21 223334444443333
Q ss_pred CCC--ceEEecCCcchhhhhh
Q 004198 644 YPE--NVHLIRGNHEAADINA 662 (769)
Q Consensus 644 ~p~--~v~llrGNHE~~~~~~ 662 (769)
-|. .|++.+||||..-...
T Consensus 305 vp~~I~v~i~PGnhDa~r~a~ 325 (481)
T COG1311 305 VPEHIKVFIMPGNHDAVRQAL 325 (481)
T ss_pred CCCCceEEEecCCCCcccccc
Confidence 343 6788999999865443
No 177
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=76.95 E-value=31 Score=38.30 Aligned_cols=96 Identities=13% Similarity=0.161 Sum_probs=57.9
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcc-cccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSP-RAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~-R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R 153 (769)
.-+|.||+.+.+-+++.+....+.+ -..+.+...++.|.+.| .+ .-++++...| ..|..- -.++...
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-~~------G~I~lLhakT--~eli~s---~KieG~v 347 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-NN------GHIHLLHAKT--KELITS---FKIEGVV 347 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-cC------ceEEeehhhh--hhhhhe---eeeccEE
Confidence 4689999999999999876544421 12233334455444444 31 2266666666 556432 1344444
Q ss_pred cccEEEEECCcEEEEEecCCCCCccCceeEEeCCCC
Q 004198 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (769)
Q Consensus 154 ~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 189 (769)
.+.+.. ..++.|++.||. ..||++|+.++
T Consensus 348 ~~~~fs-Sdsk~l~~~~~~------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 348 SDFTFS-SDSKELLASGGT------GEVYVWNLRQN 376 (514)
T ss_pred eeEEEe-cCCcEEEEEcCC------ceEEEEecCCc
Confidence 444443 455688888874 36999999887
No 178
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=76.35 E-value=1.2e+02 Score=32.99 Aligned_cols=238 Identities=14% Similarity=0.066 Sum_probs=108.6
Q ss_pred cEEEEECCCCcEEEecCCCCCCcccccceEEE---ECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCC-C
Q 004198 76 SVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAA---VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP-G 151 (769)
Q Consensus 76 dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~---~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p-~ 151 (769)
.++.||..+.+++.+...... ...+..+ -++.||+....+ .....+..|.+..++.+.+.+.. .+ .
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~----~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~---~~~~ 85 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEG----ENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNS---VPSG 85 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEES----SSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEE---EEES
T ss_pred EEEEEcCCCCCceEeeeecCC----CCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeee---eccC
Confidence 345556689999987643111 1122222 245888886543 12344667766654345666642 22 1
Q ss_pred Ccc-ccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEc---------CCCCCCCCcccccEEEEecCC-EEE
Q 004198 152 PRY-GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL---------NPEGDRPSARMYATASARSDG-MFL 220 (769)
Q Consensus 152 ~R~-~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v---------~~~~~~P~~r~~hsa~~~~~g-~l~ 220 (769)
+.. .|.+..-.++.+|+.-.. -..+.+|++..+. .-... .+..........|.+....++ .+|
T Consensus 86 g~~p~~i~~~~~g~~l~vany~-----~g~v~v~~l~~~g-~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYG-----GGSVSVFPLDDDG-SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTS-EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred CCCcEEEEEecCCCEEEEEEcc-----CCeEEEEEccCCc-ccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 222 232222245566664322 2346777776531 11111 011011122334777767775 455
Q ss_pred EEcccCCCCCcccceEEEecCCCC-ceEEEeCCCCCCCcccceEEEEe--CCEEEEEecccCCCCcccCCCcEEEEECC-
Q 004198 221 LCGGRDASGAPLADAYGLLMHRNG-QWEWTLAPGVAPSPRYQHAAVFV--GARLHVTGGALRGGRAIEGEAAVAVLDTA- 296 (769)
Q Consensus 221 v~GG~~~~~~~l~d~~~ld~~~~~-~W~W~~~~~~~P~~R~~hs~~~~--~~~i~V~GG~~~~~~~~~~~~~v~~yd~~- 296 (769)
+.. . -.+.++.|+..... ..+....... |..---..+++. +..+||..-. .+.|.+|+..
T Consensus 160 v~d-l-----G~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~---------s~~v~v~~~~~ 223 (345)
T PF10282_consen 160 VPD-L-----GADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNEL---------SNTVSVFDYDP 223 (345)
T ss_dssp EEE-T-----TTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETT---------TTEEEEEEEET
T ss_pred EEe-c-----CCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCC---------CCcEEEEeecc
Confidence 542 1 14567777776442 2322111111 111111223333 5688998653 2345555554
Q ss_pred -CCcEEeccCCccCCCCCCCCCCCCCccCcccccceEEEEe--CCEEEEEcCcCCCccccceEEecCC
Q 004198 297 -AGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI--GVRIYIYGGLKGDILLDDFLVAENS 361 (769)
Q Consensus 297 -t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hs~~~~--~~~iyv~GG~~~~~~~~D~~~ld~~ 361 (769)
+..|+.+......+... ......+.+++. +.+||+---. .+.+.+++++
T Consensus 224 ~~g~~~~~~~~~~~~~~~-----------~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d 275 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGF-----------TGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLD 275 (345)
T ss_dssp TTTEEEEEEEEESCETTS-----------CSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEEC
T ss_pred cCCceeEEEEeeeccccc-----------cccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEe
Confidence 77777766654422110 001133444444 3478885432 3445666653
No 179
>PRK05137 tolB translocation protein TolB; Provisional
Probab=75.67 E-value=1.5e+02 Score=33.54 Aligned_cols=194 Identities=14% Similarity=0.088 Sum_probs=88.2
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCc
Q 004198 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (769)
Q Consensus 74 ~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R 153 (769)
...+|..|.....=+.++... .+-...+...-++.|++..-.+ + ...+|++|+.+ .+...+. ..+...
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~---~~v~~p~wSpDG~~lay~s~~~-g---~~~i~~~dl~~--g~~~~l~---~~~g~~ 248 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGS---SLVLTPRFSPNRQEITYMSYAN-G---RPRVYLLDLET--GQRELVG---NFPGMT 248 (435)
T ss_pred ceEEEEECCCCCCcEEEecCC---CCeEeeEECCCCCEEEEEEecC-C---CCEEEEEECCC--CcEEEee---cCCCcc
Confidence 456777777654444444221 0111111112234554433211 1 25799999988 4455553 222221
Q ss_pred cccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCccc
Q 004198 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (769)
Q Consensus 154 ~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~ 233 (769)
...+. .-+++.|++....++ ..++|.+|+++. ....+.... . .........++..++|.... .+ ..
T Consensus 249 ~~~~~-SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~Lt~~~---~--~~~~~~~spDG~~i~f~s~~-~g--~~ 314 (435)
T PRK05137 249 FAPRF-SPDGRKVVMSLSQGG---NTDIYTMDLRSG--TTTRLTDSP---A--IDTSPSYSPDGSQIVFESDR-SG--SP 314 (435)
T ss_pred cCcEE-CCCCCEEEEEEecCC---CceEEEEECCCC--ceEEccCCC---C--ccCceeEcCCCCEEEEEECC-CC--CC
Confidence 21111 123335544433333 357999999887 555554321 1 11123334566544454321 11 24
Q ss_pred ceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEecc
Q 004198 234 DAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 304 (769)
Q Consensus 234 d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~ 304 (769)
++|.++.... ....+... ..++......-+++.+++.....+ ...++++|+.++..+.+.
T Consensus 315 ~Iy~~d~~g~---~~~~lt~~--~~~~~~~~~SpdG~~ia~~~~~~~------~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 315 QLYVMNADGS---NPRRISFG--GGRYSTPVWSPRGDLIAFTKQGGG------QFSIGVMKPDGSGERILT 374 (435)
T ss_pred eEEEEECCCC---CeEEeecC--CCcccCeEECCCCCEEEEEEcCCC------ceEEEEEECCCCceEecc
Confidence 7888886543 22222111 112222222224444444322111 246899998877666553
No 180
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=74.97 E-value=1.5e+02 Score=34.55 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=70.3
Q ss_pred eEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCC-C-C---CCccccEEEEECCcEEEEEecCCCCCcc
Q 004198 104 AAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ-G-P---GPRYGHVMDLVSQRYLVSVSGNDGKRVL 178 (769)
Q Consensus 104 s~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~-~-p---~~R~~hs~~~~~~~~l~v~GG~~~~~~~ 178 (769)
+-+++++.||+.... ..++.+|..+.+..|+.-..... . + ........++.+ .++|+. ..+
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~-~~v~v~-t~d----- 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD-GKVFFG-TLD----- 129 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC-CEEEEE-cCC-----
Confidence 345668899986542 35999999998888986531110 0 0 000111222334 366653 222
Q ss_pred CceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCC-CceEEEeCC
Q 004198 179 SDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN-GQWEWTLAP 252 (769)
Q Consensus 179 ~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~-~~W~W~~~~ 252 (769)
..++++|.++....|+.-... .......-++-++.++++|+..... .......++.||..+. ..|++...+
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~--~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGD--YKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred CEEEEEECCCCCEEeeccccc--ccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEeccCcC
Confidence 359999999998899865321 1111111122234577777643211 1112356888888643 245554443
No 181
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=73.62 E-value=7.8 Score=41.15 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=36.3
Q ss_pred EEEEccCCCCH---------------------HHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCC-----hHHHHHH
Q 004198 583 VKVFGDLHGQF---------------------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-----SLETITL 636 (769)
Q Consensus 583 i~viGDiHG~~---------------------~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~-----s~e~l~l 636 (769)
|+-+.|+||++ ..+..+++........ .-+|..||+++..+. ....+..
T Consensus 3 il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~~ 77 (281)
T cd07409 3 ILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPN-----VLFLNAGDAFQGTLWYTLYKGNADAEF 77 (281)
T ss_pred EEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCC-----EEEEeCCCCCCCcchhhhcCChHHHHH
Confidence 67789999875 3344455554322111 134448999987653 2334444
Q ss_pred HHHhhhcCCCceEEecCCcch
Q 004198 637 LLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 637 l~~lk~~~p~~v~llrGNHE~ 657 (769)
+..+. -. .+..||||.
T Consensus 78 ln~~g----~D-~~~lGNHef 93 (281)
T cd07409 78 MNLLG----YD-AMTLGNHEF 93 (281)
T ss_pred HHhcC----CC-EEEeccccc
Confidence 44432 23 444599995
No 182
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=73.25 E-value=1.5e+02 Score=32.57 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=79.5
Q ss_pred CCcEEEEECCCC--cEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeee--cCCC
Q 004198 74 TNSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVV--QGQG 149 (769)
Q Consensus 74 ~~dv~~yD~~~~--~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~--~g~~ 149 (769)
.+.++++|..+. .|+.-...+ . ..+...+.+.-++.+|+..- + - ...++.+|+.+.+..|..-.. .+..
T Consensus 162 ~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~~~~~~vy~~~~-~---~-~~~~~a~~~~~G~~~w~~~~~~~~~~~ 234 (370)
T COG1520 162 DGHLYALNADTGTLKWTYETPAP-L-SLSIYGSPAIASGTVYVGSD-G---Y-DGILYALNAEDGTLKWSQKVSQTIGRT 234 (370)
T ss_pred CCeEEEEEccCCcEEEEEecCCc-c-ccccccCceeecceEEEecC-C---C-cceEEEEEccCCcEeeeeeeecccCcc
Confidence 367999999876 488544321 1 22222222344456666432 1 1 236999999988888985321 1111
Q ss_pred CCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCC
Q 004198 150 PGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG 229 (769)
Q Consensus 150 p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~ 229 (769)
... ....+....+++-|+.-.......+.++|..+.+..|+.-... .....+..-+.....+|.+|+........
T Consensus 235 ~~~----~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~-~~~~~~~~~~~~~~~dG~v~~~~~~~~~~ 309 (370)
T COG1520 235 AIS----TTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGG-SVQGSGLYTTPVAGADGKVYIGFTDNDGR 309 (370)
T ss_pred ccc----ccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEeccc-EeccCCeeEEeecCCCccEEEEEeccccc
Confidence 110 1122333344444332111123348999999888899887641 11122333333333588888764332211
Q ss_pred CcccceEEEec
Q 004198 230 APLADAYGLLM 240 (769)
Q Consensus 230 ~~l~d~~~ld~ 240 (769)
....++.++.
T Consensus 310 -~~~~~~~~~~ 319 (370)
T COG1520 310 -GSGSLYALAD 319 (370)
T ss_pred -cccceEEEec
Confidence 3456677776
No 183
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=72.46 E-value=5.5 Score=51.09 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=39.2
Q ss_pred EEEEccCCCCH---HHHHHHHHHhCCCCCCCCCcceeEEE-eccccCCCCCh-----HHHHHHHHHhhhcCCCceEEecC
Q 004198 583 VKVFGDLHGQF---GDLMRLFDEYGFPSTAGDITYIDYLF-LGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRG 653 (769)
Q Consensus 583 i~viGDiHG~~---~~l~~~l~~~~~~~~~~~~~~~~~vf-LGD~vDrG~~s-----~e~l~ll~~lk~~~p~~v~llrG 653 (769)
|+.+.|+||.+ ..+..+++.......+ .+++ .||+++..+.+ ..++.+|..+. --++..|
T Consensus 663 Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~------~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-----~d~~~~G 731 (1163)
T PRK09419 663 ILHTNDFHGHLDGAAKRVTKIKEVKEENPN------TILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-----YDASTFG 731 (1163)
T ss_pred EEEEeecccCCCCHHHHHHHHHHHHhhCCC------eEEEecCCCCCCcchhhhcCChHHHHHHhCcC-----CCEEEec
Confidence 78889999985 4444455544321111 2333 79999977644 34555555542 3366899
Q ss_pred Ccch
Q 004198 654 NHEA 657 (769)
Q Consensus 654 NHE~ 657 (769)
|||.
T Consensus 732 NHEf 735 (1163)
T PRK09419 732 NHEF 735 (1163)
T ss_pred cccc
Confidence 9995
No 184
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=72.17 E-value=2.4e+02 Score=34.49 Aligned_cols=70 Identities=24% Similarity=0.223 Sum_probs=37.8
Q ss_pred CcEEEEEccCCcceEEE-----eeec---CCCCCCccc-cEEEEECCcEEEEEecC--CCC---CccCceeEEeCCCCCc
Q 004198 126 DDLYVLDLTNDKFKWHR-----VVVQ---GQGPGPRYG-HVMDLVSQRYLVSVSGN--DGK---RVLSDAWALDTAQKPY 191 (769)
Q Consensus 126 ~dl~~~d~~t~~~~W~~-----~~~~---g~~p~~R~~-hs~~~~~~~~l~v~GG~--~~~---~~~~dv~~~d~~~~~~ 191 (769)
..++.+|..|.+..|.- +... +..+..-+. .+.-++.++.+|+ |+. +.. .....+..||.++...
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCCcEEEEEECCCCcE
Confidence 34889999887777752 1110 122222221 2222333335555 543 211 2346688899999988
Q ss_pred eEEEc
Q 004198 192 VWQRL 196 (769)
Q Consensus 192 ~W~~v 196 (769)
.|.--
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 88754
No 185
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=72.14 E-value=4.2 Score=44.80 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=33.7
Q ss_pred eEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhh
Q 004198 616 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (769)
.+-.+||+-||||++-.+++-|..+ ..+-+-.||||-.++
T Consensus 193 hLHiVGDIyDRGP~pd~Imd~L~~y-----hsvDiQWGNHDilWm 232 (648)
T COG3855 193 HLHIVGDIYDRGPYPDKIMDTLINY-----HSVDIQWGNHDILWM 232 (648)
T ss_pred heeeecccccCCCCchHHHHHHhhc-----ccccccccCcceEEe
Confidence 5677999999999999999988775 378888999996554
No 186
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=72.08 E-value=75 Score=29.10 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=46.8
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEE-ccCCcceEEEeee
Q 004198 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLD-LTNDKFKWHRVVV 145 (769)
Q Consensus 74 ~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d-~~t~~~~W~~~~~ 145 (769)
...+.+||+.+.+|+.+...............+.++++|-++.-........=++|+++ ..+ .+|.+...
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k--~~Wsk~~~ 89 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK--QEWSKKHI 89 (129)
T ss_pred CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc--ceEEEEEE
Confidence 46899999999999988753122344566777778887777654322222346799995 434 67987743
No 187
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=72.03 E-value=1.7e+02 Score=32.54 Aligned_cols=148 Identities=18% Similarity=0.140 Sum_probs=72.6
Q ss_pred CcEEEEEccCCcceEEEeeecCCCCCCccccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCC
Q 004198 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (769)
Q Consensus 126 ~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~ 204 (769)
..++++|+.+. +...+. ..+..... .... +++.+++....++ ..++|.+|+.+. ....+......
T Consensus 214 ~~i~v~d~~~g--~~~~~~---~~~~~~~~--~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~--~~~~l~~~~~~-- 279 (417)
T TIGR02800 214 PEIYVQDLATG--QREKVA---SFPGMNGA--PAFSPDGSKLAVSLSKDG---NPDIYVMDLDGK--QLTRLTNGPGI-- 279 (417)
T ss_pred cEEEEEECCCC--CEEEee---cCCCCccc--eEECCCCCEEEEEECCCC---CccEEEEECCCC--CEEECCCCCCC--
Confidence 57999999884 344442 12222222 2222 3335555433322 257999999887 55666433111
Q ss_pred cccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEE-eCCEEEEEecccCCCCc
Q 004198 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF-VGARLHVTGGALRGGRA 283 (769)
Q Consensus 205 ~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~-~~~~i~V~GG~~~~~~~ 283 (769)
........++..+++...... ..++|.++.... .+ ..+.. ...+....+. -+++.+++.....+
T Consensus 280 ---~~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~-~~--~~l~~---~~~~~~~~~~spdg~~i~~~~~~~~--- 344 (417)
T TIGR02800 280 ---DTEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGG-EV--RRLTF---RGGYNASPSWSPDGDLIAFVHREGG--- 344 (417)
T ss_pred ---CCCEEECCCCCEEEEEECCCC---CceEEEEECCCC-CE--EEeec---CCCCccCeEECCCCCEEEEEEccCC---
Confidence 111122346544444322111 247888887644 22 22221 1112222222 25555665543221
Q ss_pred ccCCCcEEEEECCCCcEEeccC
Q 004198 284 IEGEAAVAVLDTAAGVWLDRNG 305 (769)
Q Consensus 284 ~~~~~~v~~yd~~t~~W~~~~~ 305 (769)
...++++|+.++.++.+..
T Consensus 345 ---~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 345 ---GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred ---ceEEEEEeCCCCCeEEccC
Confidence 2469999999877766643
No 188
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=71.78 E-value=7.4 Score=41.52 Aligned_cols=45 Identities=29% Similarity=0.356 Sum_probs=28.2
Q ss_pred eEEEeccccCCCCChH--H------HHHHHHHhhhcCC-CceEEecCCcchhhh
Q 004198 616 DYLFLGDYVDRGQHSL--E------TITLLLALKIEYP-ENVHLIRGNHEAADI 660 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s~--e------~l~ll~~lk~~~p-~~v~llrGNHE~~~~ 660 (769)
-+|+.||+++.+.... + .-.+...++..+| -.|+.+.||||..-.
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~ 124 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPV 124 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcc
Confidence 5788999998775421 1 1223333443333 379999999998643
No 189
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=71.60 E-value=1.5e+02 Score=31.84 Aligned_cols=179 Identities=16% Similarity=0.224 Sum_probs=76.5
Q ss_pred CCCcEEEecCCCCCCcccccceEEEE-CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEE
Q 004198 83 LTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 161 (769)
Q Consensus 83 ~~~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~ 161 (769)
.-.+|++++... +.|-..+.+..+ ++.++++|.. . -+|-......+|+.+.... . -.-..+...
T Consensus 89 gG~tW~~v~l~~--~lpgs~~~i~~l~~~~~~l~~~~-------G--~iy~T~DgG~tW~~~~~~~--~--gs~~~~~r~ 153 (302)
T PF14870_consen 89 GGKTWERVPLSS--KLPGSPFGITALGDGSAELAGDR-------G--AIYRTTDGGKTWQAVVSET--S--GSINDITRS 153 (302)
T ss_dssp TTSS-EE----T--T-SS-EEEEEEEETTEEEEEETT-----------EEEESSTTSSEEEEE-S--------EEEEEE-
T ss_pred CCCCcEEeecCC--CCCCCeeEEEEcCCCcEEEEcCC-------C--cEEEeCCCCCCeeEcccCC--c--ceeEeEEEC
Confidence 456799986432 233444555554 4577777643 1 2333344446799885311 1 111223344
Q ss_pred CCcEEEEEecCCCCCccCcee-EEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEec
Q 004198 162 SQRYLVSVSGNDGKRVLSDAW-ALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLM 240 (769)
Q Consensus 162 ~~~~l~v~GG~~~~~~~~dv~-~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~ 240 (769)
.++.+++++.. ..++ ..|+... .|+..... ..|+-.++....++.+++.. +.+ .++.-+
T Consensus 154 ~dG~~vavs~~------G~~~~s~~~G~~--~w~~~~r~----~~~riq~~gf~~~~~lw~~~-~Gg------~~~~s~- 213 (302)
T PF14870_consen 154 SDGRYVAVSSR------GNFYSSWDPGQT--TWQPHNRN----SSRRIQSMGFSPDGNLWMLA-RGG------QIQFSD- 213 (302)
T ss_dssp TTS-EEEEETT------SSEEEEE-TT-S--S-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT------EEEEEE-
T ss_pred CCCcEEEEECc------ccEEEEecCCCc--cceEEccC----ccceehhceecCCCCEEEEe-CCc------EEEEcc-
Confidence 56576666642 2233 3566555 68887653 56777788777888888764 211 122222
Q ss_pred CCCCceEEEeCCCCCCCcccceE-EEEe-CCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCC
Q 004198 241 HRNGQWEWTLAPGVAPSPRYQHA-AVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (769)
Q Consensus 241 ~~~~~W~W~~~~~~~P~~R~~hs-~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 306 (769)
..+..-+|.+.....+...++.- ++.. ++.+++.||. ..+++=.=..++|++....
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~----------G~l~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS----------GTLLVSTDGGKTWQKDRVG 271 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST----------T-EEEESSTTSS-EE-GGG
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC----------ccEEEeCCCCccceECccc
Confidence 11112256654322223444433 3333 6889999983 2244433445789998764
No 190
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=71.53 E-value=1.1e+02 Score=30.30 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=75.2
Q ss_pred eEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeec-CCCCCCccccEEEEECC-cEEEEEecCCCCCccCce
Q 004198 104 AAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ-GQGPGPRYGHVMDLVSQ-RYLVSVSGNDGKRVLSDA 181 (769)
Q Consensus 104 s~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~-g~~p~~R~~hs~~~~~~-~~l~v~GG~~~~~~~~dv 181 (769)
+++...+.+|+|-| +.+|+++.......-..+... ...|.. . -++..... +.+|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~~-I-DAa~~~~~~~~~yfFkg-------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPSP-V-DAAFERPDTGKIYFFKG-------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCCC-c-cEEEEECCCCEEEEECC-------CEE
Confidence 34445588999966 237888764211111112110 112221 2 23333333 68888876 368
Q ss_pred eEEeCCCCCceE---EEcCCCCCCCCcccccEEEEec-CCEEEEEcccCCCCCcccceEEEecCCCC---------ceEE
Q 004198 182 WALDTAQKPYVW---QRLNPEGDRPSARMYATASARS-DGMFLLCGGRDASGAPLADAYGLLMHRNG---------QWEW 248 (769)
Q Consensus 182 ~~~d~~~~~~~W---~~v~~~~~~P~~r~~hsa~~~~-~g~l~v~GG~~~~~~~l~d~~~ld~~~~~---------~W~W 248 (769)
|+|+..+. .+ ..+...+-++.+..-.++.... ++.+|+|.| +..|+|+..... .-.|
T Consensus 74 w~~~~~~~--~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i~~~w 143 (194)
T cd00094 74 WVYTGKNL--EPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLIETDF 143 (194)
T ss_pred EEEcCccc--ccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcchhhcC
Confidence 88876532 22 1121112112112234444444 789999987 346677654220 0012
Q ss_pred EeCCCCCCCcccceEEEEe-CCEEEEEecccCCCCcccCCCcEEEEECCCCc
Q 004198 249 TLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (769)
Q Consensus 249 ~~~~~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~ 299 (769)
. +. |. .. .++... ++++|+|-| +.+|.||..+++
T Consensus 144 ~---g~-p~-~i-daa~~~~~~~~yfF~g-----------~~y~~~d~~~~~ 178 (194)
T cd00094 144 P---GV-PD-KV-DAAFRWLDGYYYFFKG-----------DQYWRFDPRSKE 178 (194)
T ss_pred C---Cc-CC-Cc-ceeEEeCCCcEEEEEC-----------CEEEEEeCccce
Confidence 1 11 21 12 233223 488999977 358999998776
No 191
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=71.15 E-value=1.7e+02 Score=32.38 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=73.5
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCcc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~ 154 (769)
..++++|+.+++...+.... ......+...-++.|++..... ...++|++|+.+ ....++... +....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~---~~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~--~~~~~l~~~---~~~~~ 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP---GMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDG--KQLTRLTNG---PGIDT 281 (417)
T ss_pred cEEEEEECCCCCEEEeecCC---CCccceEECCCCCEEEEEECCC----CCccEEEEECCC--CCEEECCCC---CCCCC
Confidence 47999999988777665431 1112222222234566543321 135799999988 345555321 11111
Q ss_pred ccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCccc
Q 004198 155 GHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (769)
Q Consensus 155 ~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~ 233 (769)
..... +++.|++.....+ ...+|.+|..+. ++..+...+ ..........++..+++..... ...
T Consensus 282 --~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~--~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~---~~~ 346 (417)
T TIGR02800 282 --EPSWSPDGKSIAFTSDRGG---SPQIYMMDADGG--EVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG---GGF 346 (417)
T ss_pred --CEEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEeecCC-----CCccCeEECCCCCEEEEEEccC---Cce
Confidence 11122 3334544433222 247999999877 666665331 1222334456776666665433 134
Q ss_pred ceEEEecCC
Q 004198 234 DAYGLLMHR 242 (769)
Q Consensus 234 d~~~ld~~~ 242 (769)
.++.++...
T Consensus 347 ~i~~~d~~~ 355 (417)
T TIGR02800 347 NIAVMDLDG 355 (417)
T ss_pred EEEEEeCCC
Confidence 678888765
No 192
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=69.05 E-value=1.4e+02 Score=30.63 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=46.8
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEE--ECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCC
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAA--VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~--~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~ 152 (769)
+.++.||..+.+....-..+ +.+ ..++. -++.+|+.++. ...+++||+.+.. ....+. ..
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~-~~~~~~------~~ 114 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANED------DNLVTVIDIETRK-VLAEIP------VG 114 (300)
T ss_pred CeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCe-EEeEee------CC
Confidence 56889999988765432221 111 12222 23467776542 2359999998732 122221 11
Q ss_pred ccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCC
Q 004198 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (769)
Q Consensus 153 R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 189 (769)
..-+.+....++.+++++..++ +.+..||..+.
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~ 147 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTY 147 (300)
T ss_pred CCcceEEECCCCCEEEEEecCC----CeEEEEeCCCC
Confidence 1123344444445566554332 23556787665
No 193
>PRK05137 tolB translocation protein TolB; Provisional
Probab=68.99 E-value=2e+02 Score=32.35 Aligned_cols=194 Identities=14% Similarity=0.095 Sum_probs=93.0
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCcc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~ 154 (769)
..+|.+|+.+++.+.+... +..-...+...-+++|++....+ ...++|++|+.+ ....++. ..+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~---~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~--~~~~~Lt---~~~~~-- 291 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF---PGMTFAPRFSPDGRKVVMSLSQG----GNTDIYTMDLRS--GTTTRLT---DSPAI-- 291 (435)
T ss_pred CEEEEEECCCCcEEEeecC---CCcccCcEECCCCCEEEEEEecC----CCceEEEEECCC--CceEEcc---CCCCc--
Confidence 5799999999988887643 11111222222244555543321 136799999988 3455552 11111
Q ss_pred ccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCccc
Q 004198 155 GHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (769)
Q Consensus 155 ~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~ 233 (769)
....... +++.|+......+ ..++|++|..+. ..+.+... ... ........+|..+++...... ..
T Consensus 292 ~~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~--~~~~lt~~----~~~-~~~~~~SpdG~~ia~~~~~~~---~~ 358 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRSG---SPQLYVMNADGS--NPRRISFG----GGR-YSTPVWSPRGDLIAFTKQGGG---QF 358 (435)
T ss_pred cCceeEcCCCCEEEEEECCCC---CCeEEEEECCCC--CeEEeecC----CCc-ccCeEECCCCCEEEEEEcCCC---ce
Confidence 1112222 3334443322222 247899998776 55555432 111 122333456655555433221 24
Q ss_pred ceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEecc
Q 004198 234 DAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 304 (769)
Q Consensus 234 d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~ 304 (769)
.++.++.... . ....... .........-+++.+++-....+.. ....++++|..+..-+.+.
T Consensus 359 ~i~~~d~~~~-~--~~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~---~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 359 SIGVMKPDGS-G--ERILTSG---FLVEGPTWAPNGRVIMFFRQTPGSG---GAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEEEECCCC-c--eEeccCC---CCCCCCeECCCCCEEEEEEccCCCC---CcceEEEEECCCCceEEcc
Confidence 6777776433 1 1222111 1122222222555555543322111 0246899999887766655
No 194
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.96 E-value=2e+02 Score=32.34 Aligned_cols=107 Identities=18% Similarity=0.250 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCc-EEEecCCCCCCcccccceEEEECCEEEEECccCCCCC
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRK-WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGH 123 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~-W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~ 123 (769)
+++|+..|+. ++.+-+||..++. -..+... ..|.-+. -.+..++.+++.|+-+
T Consensus 79 DG~LlaaGD~-------------------sG~V~vfD~k~r~iLR~~~ah-~apv~~~--~f~~~d~t~l~s~sDd---- 132 (487)
T KOG0310|consen 79 DGRLLAAGDE-------------------SGHVKVFDMKSRVILRQLYAH-QAPVHVT--KFSPQDNTMLVSGSDD---- 132 (487)
T ss_pred CCeEEEccCC-------------------cCcEEEeccccHHHHHHHhhc-cCceeEE--EecccCCeEEEecCCC----
Confidence 7788888884 4578888965521 1111111 1121111 1223478899988732
Q ss_pred CcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCC
Q 004198 124 STDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (769)
Q Consensus 124 ~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 189 (769)
.-+-.+|+.+.. ..+...|..-.-|++.. .-.+..|++-||+++. +-.||+.+.
T Consensus 133 --~v~k~~d~s~a~---v~~~l~~htDYVR~g~~--~~~~~hivvtGsYDg~-----vrl~DtR~~ 186 (487)
T KOG0310|consen 133 --KVVKYWDLSTAY---VQAELSGHTDYVRCGDI--SPANDHIVVTGSYDGK-----VRLWDTRSL 186 (487)
T ss_pred --ceEEEEEcCCcE---EEEEecCCcceeEeecc--ccCCCeEEEecCCCce-----EEEEEeccC
Confidence 113444555522 23333344444444432 2234589999999885 455666554
No 195
>PRK04792 tolB translocation protein TolB; Provisional
Probab=68.90 E-value=2.1e+02 Score=32.49 Aligned_cols=148 Identities=17% Similarity=0.208 Sum_probs=73.4
Q ss_pred CcEEEEEccCCcceEEEeeecCCCCCCccccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCC
Q 004198 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (769)
Q Consensus 126 ~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~ 204 (769)
..+|++|+.+. +-..+. ..+.... ..... +++.|++....++ ..++|.+|++++ +.+.+.....
T Consensus 242 ~~L~~~dl~tg--~~~~lt---~~~g~~~--~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg--~~~~lt~~~~--- 306 (448)
T PRK04792 242 AEIFVQDIYTQ--VREKVT---SFPGING--APRFSPDGKKLALVLSKDG---QPEIYVVDIATK--ALTRITRHRA--- 306 (448)
T ss_pred cEEEEEECCCC--CeEEec---CCCCCcC--CeeECCCCCEEEEEEeCCC---CeEEEEEECCCC--CeEECccCCC---
Confidence 57999999873 344442 2222111 22222 3445555443333 257999999887 6666654311
Q ss_pred cccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEE-eCCEEEEEecccCCCCc
Q 004198 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF-VGARLHVTGGALRGGRA 283 (769)
Q Consensus 205 ~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~-~~~~i~V~GG~~~~~~~ 283 (769)
.........++..+++..... + ..++|.++.... .++.....+. +..+.+. -+++.+++.+...+
T Consensus 307 --~~~~p~wSpDG~~I~f~s~~~-g--~~~Iy~~dl~~g-~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~g--- 372 (448)
T PRK04792 307 --IDTEPSWHPDGKSLIFTSERG-G--KPQIYRVNLASG-KVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTNG--- 372 (448)
T ss_pred --CccceEECCCCCEEEEEECCC-C--CceEEEEECCCC-CEEEEecCCC-----CCcCeeECCCCCEEEEEEecCC---
Confidence 111223345665444432211 1 257888887644 3332221111 1111222 24444444333221
Q ss_pred ccCCCcEEEEECCCCcEEeccC
Q 004198 284 IEGEAAVAVLDTAAGVWLDRNG 305 (769)
Q Consensus 284 ~~~~~~v~~yd~~t~~W~~~~~ 305 (769)
...++++|+.+++.+.+..
T Consensus 373 ---~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 ---KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred ---ceEEEEEECCCCCeEEccC
Confidence 2468999999988876643
No 196
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=68.84 E-value=9.5 Score=37.02 Aligned_cols=70 Identities=24% Similarity=0.375 Sum_probs=44.6
Q ss_pred ecCCEEEEccCC-CCHHHHHHHHHHhCCCCCCCCCcceeEEEecccc--CCCCChHHHHHHHHHhhhcCCCceEEecCCc
Q 004198 579 LRAPVKVFGDLH-GQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYV--DRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (769)
Q Consensus 579 ~~~~i~viGDiH-G~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~v--DrG~~s~e~l~ll~~lk~~~p~~v~llrGNH 655 (769)
+..|.-|+|+=- |.-+...+-.... ..+++ .++.-||+- -|=++..+-+.+|-+| |..-+++||||
T Consensus 15 ~pKpM~vFGe~W~gh~ekI~k~W~~~-v~~eD------iVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNH 83 (230)
T COG1768 15 VPKPMEVFGEPWSGHHEKIKKHWRSK-VSPED------IVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNH 83 (230)
T ss_pred CCCceeecCCcccCchHHHHHHHHhc-CChhh------EEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCC
Confidence 346677777743 3334443333322 12222 456689985 3667778888888776 78899999999
Q ss_pred chhh
Q 004198 656 EAAD 659 (769)
Q Consensus 656 E~~~ 659 (769)
|.+.
T Consensus 84 DYWw 87 (230)
T COG1768 84 DYWW 87 (230)
T ss_pred cccc
Confidence 9764
No 197
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=67.18 E-value=99 Score=34.32 Aligned_cols=193 Identities=18% Similarity=0.193 Sum_probs=99.0
Q ss_pred cCCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCC
Q 004198 73 VTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (769)
Q Consensus 73 ~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~ 152 (769)
+++++|++|-.-+---+++-.+ |-.|. +++-..++..|++-=. .++-+++.|+++.. =-++ .|.+..|
T Consensus 404 ~~N~vYilDe~lnvvGkltGl~--~gERI-YAvRf~gdv~yiVTfr-----qtDPlfviDlsNPe--nPkv--lGeLKIP 471 (603)
T COG4880 404 PVNAVYILDENLNVVGKLTGLA--PGERI-YAVRFVGDVLYIVTFR-----QTDPLFVIDLSNPE--NPKV--LGELKIP 471 (603)
T ss_pred ccceeEEEcCCCcEEEEEeccC--CCceE-EEEEEeCceEEEEEEe-----ccCceEEEEcCCCC--CCce--eEEEecC
Confidence 6899999999988877776543 44554 4455567877776533 35669999998732 2222 2455555
Q ss_pred ccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCC--CceEEEcCCC-CCCCCcccccEEEEecCCEEEEEcccCCCC
Q 004198 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK--PYVWQRLNPE-GDRPSARMYATASARSDGMFLLCGGRDASG 229 (769)
Q Consensus 153 R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~~~W~~v~~~-~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~ 229 (769)
-+..=+.-++++.++=+|-..+.- .+-.||...- |-+-.+..-. --.|.-+.+|+...-..-.++..--
T Consensus 472 GfS~YLHpigen~~lGvG~~~g~v---KiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPa----- 543 (603)
T COG4880 472 GFSEYLHPIGENRLLGVGAYQGGV---KISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPA----- 543 (603)
T ss_pred CchhhccccCCCcEEEeecccCCc---eEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecc-----
Confidence 555445455665665555554432 2334444321 0000000000 0114445555554333333433321
Q ss_pred CcccceEEEecCCCCceEEEeC-CCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCC
Q 004198 230 APLADAYGLLMHRNGQWEWTLA-PGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (769)
Q Consensus 230 ~~l~d~~~ld~~~~~~W~W~~~-~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 306 (769)
.+.-+.|...... +-++- ....+. -.+.++++.+|++|| +.+|+||- +.|+.+...
T Consensus 544 --y~~gyif~iedg~--kl~k~~e~k~na----~RA~fi~dylY~vg~-----------~ev~~lde--nswe~Vge~ 600 (603)
T COG4880 544 --YLGGYIFFIEDGS--KLRKRAERKLNA----DRAFFIKDYLYLVGG-----------NEVWKLDE--NSWEVVGEA 600 (603)
T ss_pred --cCccEEEEEecCc--eeeehhhhcccc----eeeEEecceEEEecc-----------ceeEEecc--chHhhhhhe
Confidence 1112223322110 11111 111111 245677999999998 45888876 678776543
No 198
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=66.88 E-value=1.5e+02 Score=30.17 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=73.8
Q ss_pred EEEEECCCCcEEEecCC--CCCCcccccceEEEECCEEEEECccCCCCCCc--CcEEEEEccCCcceEEEeeecCCCCCC
Q 004198 77 VHLYDVLTRKWTRIRPA--GEPPSPRAAHAAAAVGTMVVFQGGIGPAGHST--DDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (769)
Q Consensus 77 v~~yD~~~~~W~~l~~~--g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~--~dl~~~d~~t~~~~W~~~~~~g~~p~~ 152 (769)
+..+|+.+++++.+... +..+..+..-.++.-++.+|+.--........ ..+|+++... + ...+.. .+
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~--~~~~~~--~~--- 133 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-K--VTVVAD--GL--- 133 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-E--EEEEEE--EE---
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-e--EEEEec--Cc---
Confidence 46669999999988654 22234444445554566777754321111112 5699999882 2 333321 11
Q ss_pred ccccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCc-ccccEEEEecCCEEEEEcccCCCCC
Q 004198 153 RYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA-RMYATASARSDGMFLLCGGRDASGA 230 (769)
Q Consensus 153 R~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~-r~~hsa~~~~~g~l~v~GG~~~~~~ 230 (769)
..-..+++. +++.||+.-. ..+.+|+|++......+.........+.. ..-..+++-.+|.||+..-
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~------ 202 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW------ 202 (246)
T ss_dssp SSEEEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE------
T ss_pred ccccceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc------
Confidence 112244444 3446776322 23559999986443233322111111111 1234455557889998632
Q ss_pred cccceEEEecC
Q 004198 231 PLADAYGLLMH 241 (769)
Q Consensus 231 ~l~d~~~ld~~ 241 (769)
..+.+++|+..
T Consensus 203 ~~~~I~~~~p~ 213 (246)
T PF08450_consen 203 GGGRIVVFDPD 213 (246)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEECCC
Confidence 12568888887
No 199
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=65.42 E-value=13 Score=38.83 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCC-----hHHHHHHHHHhhhcCCCceEEecCCcch
Q 004198 591 GQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-----SLETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 591 G~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~-----s~e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
|-+..+..+++.......+ .-+|..||+++..+. ...++..|..+. --+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~~-----~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENPN-----TLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCCC-----EEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 3466677777765432111 145569999987653 245556665553 23567899996
No 200
>PRK13684 Ycf48-like protein; Provisional
Probab=64.22 E-value=2.2e+02 Score=30.97 Aligned_cols=168 Identities=13% Similarity=0.150 Sum_probs=78.3
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEECC-EEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGT-MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~-~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R 153 (769)
..+++-+-.-.+|+++... ..-.-+.+....+ .++++|..+ .++.- ......+|+.+. .+..+
T Consensus 152 G~i~~S~DgG~tW~~~~~~----~~g~~~~i~~~~~g~~v~~g~~G-------~i~~s-~~~gg~tW~~~~----~~~~~ 215 (334)
T PRK13684 152 GAIYRTTDGGKNWEALVED----AAGVVRNLRRSPDGKYVAVSSRG-------NFYST-WEPGQTAWTPHQ----RNSSR 215 (334)
T ss_pred ceEEEECCCCCCceeCcCC----CcceEEEEEECCCCeEEEEeCCc-------eEEEE-cCCCCCeEEEee----CCCcc
Confidence 3566544455689988642 2223344444444 444444321 13332 112224699884 34455
Q ss_pred cccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCccc
Q 004198 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (769)
Q Consensus 154 ~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~ 233 (769)
.-+++....++.++++|.. + ..++......-.|+.+.... .......++.....++.+++.|...
T Consensus 216 ~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G~sW~~~~~~~-~~~~~~l~~v~~~~~~~~~~~G~~G------- 280 (334)
T PRK13684 216 RLQSMGFQPDGNLWMLARG-G------QIRFNDPDDLESWSKPIIPE-ITNGYGYLDLAYRTPGEIWAGGGNG------- 280 (334)
T ss_pred cceeeeEcCCCCEEEEecC-C------EEEEccCCCCCccccccCCc-cccccceeeEEEcCCCCEEEEcCCC-------
Confidence 5556656566677777642 2 22332122223798764310 0011112333344577888887531
Q ss_pred ceEEEecCCCCceEEEeCCCCCCCcccceEEEEe-CCEEEEEec
Q 004198 234 DAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGG 276 (769)
Q Consensus 234 d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~-~~~i~V~GG 276 (769)
-++. ..+... +|.........+.....+++. +++.|+.|.
T Consensus 281 ~v~~-S~d~G~--tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 281 TLLV-SKDGGK--TWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred eEEE-eCCCCC--CCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 1222 222223 444443211122233444544 777888775
No 201
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.01 E-value=2.5e+02 Score=31.50 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=47.7
Q ss_pred eEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCce---EEEeCCCCCCCcccc-eEEEEe
Q 004198 192 VWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQW---EWTLAPGVAPSPRYQ-HAAVFV 267 (769)
Q Consensus 192 ~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W---~W~~~~~~~P~~R~~-hs~~~~ 267 (769)
.|+.+... ..+...++....++.+++.|.. ..++..+.. ...| +|.+..-. ..++. .++++.
T Consensus 271 ~W~~~~~~----~~~~l~~v~~~~dg~l~l~g~~-------G~l~~S~d~-G~~~~~~~f~~~~~~--~~~~~l~~v~~~ 336 (398)
T PLN00033 271 YWQPHNRA----SARRIQNMGWRADGGLWLLTRG-------GGLYVSKGT-GLTEEDFDFEEADIK--SRGFGILDVGYR 336 (398)
T ss_pred ceEEecCC----CccceeeeeEcCCCCEEEEeCC-------ceEEEecCC-CCcccccceeecccC--CCCcceEEEEEc
Confidence 38887653 3344344444577888887643 122222222 2234 45554322 22222 233333
Q ss_pred -CCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCC
Q 004198 268 -GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (769)
Q Consensus 268 -~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 306 (769)
++.+++.|.. .-++.-....+.|+.....
T Consensus 337 ~d~~~~a~G~~----------G~v~~s~D~G~tW~~~~~~ 366 (398)
T PLN00033 337 SKKEAWAAGGS----------GILLRSTDGGKSWKRDKGA 366 (398)
T ss_pred CCCcEEEEECC----------CcEEEeCCCCcceeEcccc
Confidence 6788888862 2255555667899997643
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=63.44 E-value=1.9e+02 Score=29.89 Aligned_cols=158 Identities=20% Similarity=0.257 Sum_probs=78.0
Q ss_pred CcEEEecCCC--CCCccccc-ceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEE
Q 004198 85 RKWTRIRPAG--EPPSPRAA-HAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 161 (769)
Q Consensus 85 ~~W~~l~~~g--~~P~~R~~-hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~ 161 (769)
.-|+...++. ..+.|-.. .....-+|.|+..||- ..+|+.|+++ .+.++.- .-..-|-|+.+.-
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~--G~i~r~~----rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLED--GRIQREY----RGHTDYVHSVVGR 165 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecC--CEEEEEE----cCCcceeeeeeec
Confidence 3477766553 23333322 2222246788888873 3489999999 4566653 1223455666443
Q ss_pred CCcEEEEEecCCCCCccCceeEEeCCCCCceEEE-cCCCCCCCCcc--ccc-EEEEecCCEEEEEcccCCCCCcccceEE
Q 004198 162 SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQR-LNPEGDRPSAR--MYA-TASARSDGMFLLCGGRDASGAPLADAYG 237 (769)
Q Consensus 162 ~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~-v~~~~~~P~~r--~~h-sa~~~~~g~l~v~GG~~~~~~~l~d~~~ 237 (769)
...-=++-|+.++. +-++|+++. +-.+ +.+-...-.-| ... -++...+.-.+++||-- --.+|-
T Consensus 166 ~~~~qilsG~EDGt-----vRvWd~kt~--k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-----~lslwh 233 (325)
T KOG0649|consen 166 NANGQILSGAEDGT-----VRVWDTKTQ--KHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-----KLSLWH 233 (325)
T ss_pred ccCcceeecCCCcc-----EEEEecccc--ceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-----ceeEEe
Confidence 32234555666653 556677665 3222 22211111112 111 12223455566676632 234565
Q ss_pred EecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEe
Q 004198 238 LLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTG 275 (769)
Q Consensus 238 ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~G 275 (769)
+..... +. ..|.|-..|-+.++++.+++.|
T Consensus 234 Lrsse~-----t~---vfpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 234 LRSSES-----TC---VFPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred ccCCCc-----eE---EEecccceeEeeeecceEEEec
Confidence 544321 11 1244444556667777766665
No 203
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=63.16 E-value=55 Score=34.25 Aligned_cols=159 Identities=15% Similarity=0.116 Sum_probs=87.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCC
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~ 124 (769)
++.||.--|..+ .+.+.+||+.+++-.+.... |..-.+=+++.++++||..--.
T Consensus 55 ~g~LyESTG~yG-----------------~S~l~~~d~~tg~~~~~~~l---~~~~FgEGit~~~d~l~qLTWk------ 108 (264)
T PF05096_consen 55 DGTLYESTGLYG-----------------QSSLRKVDLETGKVLQSVPL---PPRYFGEGITILGDKLYQLTWK------ 108 (264)
T ss_dssp TTEEEEEECSTT-----------------EEEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEESS------
T ss_pred CCEEEEeCCCCC-----------------cEEEEEEECCCCcEEEEEEC---CccccceeEEEECCEEEEEEec------
Confidence 678888777653 36799999999986654433 4445666889999999999875
Q ss_pred cCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCC-CCCC
Q 004198 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE-GDRP 203 (769)
Q Consensus 125 ~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~-~~~P 203 (769)
....++||..+ .+.+ +..+.+..|-.++..+ ..+++--| .+.++.+|+++-. .=..+... ...|
T Consensus 109 ~~~~f~yd~~t----l~~~---~~~~y~~EGWGLt~dg-~~Li~SDG------S~~L~~~dP~~f~-~~~~i~V~~~g~p 173 (264)
T PF05096_consen 109 EGTGFVYDPNT----LKKI---GTFPYPGEGWGLTSDG-KRLIMSDG------SSRLYFLDPETFK-EVRTIQVTDNGRP 173 (264)
T ss_dssp SSEEEEEETTT----TEEE---EEEE-SSS--EEEECS-SCEEEE-S------SSEEEEE-TTT-S-EEEEEE-EETTEE
T ss_pred CCeEEEEcccc----ceEE---EEEecCCcceEEEcCC-CEEEEECC------ccceEEECCcccc-eEEEEEEEECCEE
Confidence 34589999987 2333 2233345777776444 47777655 3568889987531 11122111 1112
Q ss_pred CcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCC
Q 004198 204 SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP 252 (769)
Q Consensus 204 ~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~ 252 (769)
..+..- .-+.+|.+|. +-. ..+.+.+.|+.+...-.|..+.
T Consensus 174 v~~LNE--LE~i~G~IyA-----NVW-~td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 174 VSNLNE--LEYINGKIYA-----NVW-QTDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp ---EEE--EEEETTEEEE-----EET-TSSEEEEEETTT-BEEEEEE-H
T ss_pred CCCcEe--EEEEcCEEEE-----EeC-CCCeEEEEeCCCCeEEEEEEhh
Confidence 221111 1123555554 111 2466778888776555666654
No 204
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=62.03 E-value=12 Score=37.67 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=36.6
Q ss_pred EEEEccCCCC-----HHHHHHHHHHhC-CCCCCCCCcceeEEEeccccCCCCChH-------------HHHHHHHHhhhc
Q 004198 583 VKVFGDLHGQ-----FGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRGQHSL-------------ETITLLLALKIE 643 (769)
Q Consensus 583 i~viGDiHG~-----~~~l~~~l~~~~-~~~~~~~~~~~~~vfLGD~vDrG~~s~-------------e~l~ll~~lk~~ 643 (769)
|++++|+|=. ++.|.++|..+. ...-. .+|++|+++|.-.... +.+..+..+...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~------~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPD------VLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES 74 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTEC------EEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCc------EEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh
Confidence 5677777755 556666676654 22112 7899999999632111 111122221111
Q ss_pred --CCCceEEecCCcchhhh
Q 004198 644 --YPENVHLIRGNHEAADI 660 (769)
Q Consensus 644 --~p~~v~llrGNHE~~~~ 660 (769)
.--+|+++.|+||....
T Consensus 75 i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 75 ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHCCSEEEEE--TTCTT-S
T ss_pred cccccEEEEeCCCcccccc
Confidence 12589999999997655
No 205
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.53 E-value=20 Score=39.92 Aligned_cols=71 Identities=18% Similarity=0.344 Sum_probs=52.1
Q ss_pred cCCEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCc
Q 004198 580 RAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (769)
Q Consensus 580 ~~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNH 655 (769)
.+.|.||||.-|.+..|.+-.+...-. .|. +.-++++|++.+--..+.|++.+....+ +.|-.++++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk--~Gp--Fd~liCvGnfF~~~~~~~e~~~ykng~~-~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKK--SGP--FDLLICVGNFFGHDTQNAEVEKYKNGTK-KVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhc--CCC--ceEEEEecccCCCccchhHHHHHhcCCc-cCceeEEEecCCC
Confidence 367999999999999998777665321 221 1157779999998777888888776643 6777788887765
No 206
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=60.98 E-value=1.8e+02 Score=28.87 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=42.5
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEEC-CEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~-~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R 153 (769)
+.+++||..+.+....-.. ....-.++.... +.+++.|+. ...+.+||+.+.. ....+. ....
T Consensus 73 ~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~~~~~-----~~~~ 136 (289)
T cd00200 73 KTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETGK-CLTTLR-----GHTD 136 (289)
T ss_pred CeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCcE-EEEEec-----cCCC
Confidence 5688888887532221111 011112222222 355655552 2458899988622 122221 1111
Q ss_pred cccEEEEECCcEEEEEecCCCCCccCceeEEeCCCC
Q 004198 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (769)
Q Consensus 154 ~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 189 (769)
.-.++....++.+++.|+.+ ..+.+||+.+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~ 167 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTG 167 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccc
Confidence 11233233333555555423 35788888654
No 207
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=60.73 E-value=2.4e+02 Score=30.28 Aligned_cols=243 Identities=15% Similarity=0.210 Sum_probs=98.8
Q ss_pred cceeecCCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECC-CCcEEEecCCCC
Q 004198 17 ETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVL-TRKWTRIRPAGE 95 (769)
Q Consensus 17 ~~~w~~~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~-~~~W~~l~~~g~ 95 (769)
...|+.+. +|....-..+.++ +.++-|++|-. +.++. -.+ -.+|+.+....+
T Consensus 5 ~~~W~~v~-l~t~~~l~dV~F~-----d~~~G~~VG~~--------------------g~il~-T~DGG~tW~~~~~~~~ 57 (302)
T PF14870_consen 5 GNSWQQVS-LPTDKPLLDVAFV-----DPNHGWAVGAY--------------------GTILK-TTDGGKTWQPVSLDLD 57 (302)
T ss_dssp S--EEEEE--S-SS-EEEEEES-----SSS-EEEEETT--------------------TEEEE-ESSTTSS-EE-----S
T ss_pred CCCcEEee-cCCCCceEEEEEe-----cCCEEEEEecC--------------------CEEEE-ECCCCccccccccCCC
Confidence 35587765 4544444445554 25678888652 23332 222 246998864322
Q ss_pred CCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCC
Q 004198 96 PPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK 175 (769)
Q Consensus 96 ~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~ 175 (769)
.+......++...++..|+.|-. + .+|-......+|++++.....|.. .+....+++...+++|..
T Consensus 58 ~~~~~~l~~I~f~~~~g~ivG~~---g------~ll~T~DgG~tW~~v~l~~~lpgs--~~~i~~l~~~~~~l~~~~--- 123 (302)
T PF14870_consen 58 NPFDYHLNSISFDGNEGWIVGEP---G------LLLHTTDGGKTWERVPLSSKLPGS--PFGITALGDGSAELAGDR--- 123 (302)
T ss_dssp -----EEEEEEEETTEEEEEEET---T------EEEEESSTTSS-EE----TT-SS---EEEEEEEETTEEEEEETT---
T ss_pred ccceeeEEEEEecCCceEEEcCC---c------eEEEecCCCCCcEEeecCCCCCCC--eeEEEEcCCCcEEEEcCC---
Confidence 11112233444567788887742 1 244444445689999643344433 344445566677776542
Q ss_pred CccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEE-ecCCCCceEEEeCCCC
Q 004198 176 RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGL-LMHRNGQWEWTLAPGV 254 (769)
Q Consensus 176 ~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~l-d~~~~~~W~W~~~~~~ 254 (769)
..+++ .....-+|+.+... .....-.+....+|.+++.+.. .+++.- +.... .|......
T Consensus 124 ---G~iy~--T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~-------G~~~~s~~~G~~---~w~~~~r~ 184 (302)
T PF14870_consen 124 ---GAIYR--TTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSR-------GNFYSSWDPGQT---TWQPHNRN 184 (302)
T ss_dssp -----EEE--ESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETT-------SSEEEEE-TT-S---S-EEEE--
T ss_pred ---CcEEE--eCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECc-------ccEEEEecCCCc---cceEEccC
Confidence 22333 33333389987653 2222233344578887777643 233322 22222 34443322
Q ss_pred CCCcccceEEEE-eCCEEEEEecccCCCCcccCCCcEEEEE--CCCCcEEeccCCccCCCCCCCCCCCCCccCcccccce
Q 004198 255 APSPRYQHAAVF-VGARLHVTGGALRGGRAIEGEAAVAVLD--TAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRH 331 (769)
Q Consensus 255 ~P~~R~~hs~~~-~~~~i~V~GG~~~~~~~~~~~~~v~~yd--~~t~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~h 331 (769)
-..|. .++.+ -++.++++. + ++ .+..-+ -...+|.+...... ...++.
T Consensus 185 -~~~ri-q~~gf~~~~~lw~~~-~--Gg-------~~~~s~~~~~~~~w~~~~~~~~-----------------~~~~~~ 235 (302)
T PF14870_consen 185 -SSRRI-QSMGFSPDGNLWMLA-R--GG-------QIQFSDDPDDGETWSEPIIPIK-----------------TNGYGI 235 (302)
T ss_dssp -SSS-E-EEEEE-TTS-EEEEE-T--TT-------EEEEEE-TTEEEEE---B-TTS-----------------S--S-E
T ss_pred -cccee-hhceecCCCCEEEEe-C--Cc-------EEEEccCCCCccccccccCCcc-----------------cCceee
Confidence 13344 44444 467777764 1 11 233333 34567877332211 133433
Q ss_pred EEEEe--CCEEEEEcCcCC
Q 004198 332 ASASI--GVRIYIYGGLKG 348 (769)
Q Consensus 332 s~~~~--~~~iyv~GG~~~ 348 (769)
--..+ .+.+++.||...
T Consensus 236 ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 236 LDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EEEEESSSS-EEEEESTT-
T ss_pred EEEEecCCCCEEEEeCCcc
Confidence 33333 368999888643
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=60.10 E-value=2.9e+02 Score=31.08 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=72.3
Q ss_pred CcEEEEEccCCcceEEEeeecCCCCCCccccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCC
Q 004198 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (769)
Q Consensus 126 ~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~ 204 (769)
..+|++|+.+. +-..+. ..+.. .. ..... +++.|++....++ ..++|.+|+++. +...+.... .
T Consensus 223 ~~i~i~dl~~G--~~~~l~---~~~~~-~~-~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg--~~~~lt~~~---~ 287 (429)
T PRK03629 223 SALVIQTLANG--AVRQVA---SFPRH-NG-APAFSPDGSKLAFALSKTG---SLNLYVMDLASG--QIRQVTDGR---S 287 (429)
T ss_pred cEEEEEECCCC--CeEEcc---CCCCC-cC-CeEECCCCCEEEEEEcCCC---CcEEEEEECCCC--CEEEccCCC---C
Confidence 56999998873 333442 12211 11 12222 3435554433222 236999999887 566654321 1
Q ss_pred cccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcc
Q 004198 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (769)
Q Consensus 205 ~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~ 284 (769)
.........+|..++|..... + ..++|.++.... . ...+... ..........-+++.+++.+...+
T Consensus 288 --~~~~~~wSPDG~~I~f~s~~~-g--~~~Iy~~d~~~g-~--~~~lt~~--~~~~~~~~~SpDG~~Ia~~~~~~g---- 353 (429)
T PRK03629 288 --NNTEPTWFPDSQNLAYTSDQA-G--RPQVYKVNINGG-A--PQRITWE--GSQNQDADVSSDGKFMVMVSSNGG---- 353 (429)
T ss_pred --CcCceEECCCCCEEEEEeCCC-C--CceEEEEECCCC-C--eEEeecC--CCCccCEEECCCCCEEEEEEccCC----
Confidence 112233346766555543221 1 247888887643 1 2222111 111111222234544444433221
Q ss_pred cCCCcEEEEECCCCcEEeccC
Q 004198 285 EGEAAVAVLDTAAGVWLDRNG 305 (769)
Q Consensus 285 ~~~~~v~~yd~~t~~W~~~~~ 305 (769)
...++++|++++.++.+..
T Consensus 354 --~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 354 --QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred --CceEEEEECCCCCeEEeCC
Confidence 2358999999999887763
No 209
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.91 E-value=2.4e+02 Score=30.04 Aligned_cols=102 Identities=21% Similarity=0.316 Sum_probs=54.9
Q ss_pred cCCcEEEEECCCCc----EEEecCCCCCCcccccceEEE-E---CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEee
Q 004198 73 VTNSVHLYDVLTRK----WTRIRPAGEPPSPRAAHAAAA-V---GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVV 144 (769)
Q Consensus 73 ~~~dv~~yD~~~~~----W~~l~~~g~~P~~R~~hs~~~-~---~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~ 144 (769)
-.+.|+.||.++++ |+.--. -+..-++=.+-. + ++.+++.=+ ++...--+|.+|.++.. =+++.
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih---~~~~WaGEVSdIlYdP~~D~LLlAR~---DGh~nLGvy~ldr~~g~--~~~L~ 147 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIH---DKTKWAGEVSDILYDPYEDRLLLARA---DGHANLGVYSLDRRTGK--AEKLS 147 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccC---CccccccchhheeeCCCcCEEEEEec---CCcceeeeEEEcccCCc--eeecc
Confidence 35679999999887 553211 111111111111 1 457777543 33344558888988844 44553
Q ss_pred ecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceE
Q 004198 145 VQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVW 193 (769)
Q Consensus 145 ~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W 193 (769)
..|... + + .+.+ ..+||-.+...-.+.+.|||+.++ +|
T Consensus 148 ---~~ps~K-G--~-~~~D--~a~F~i~~~~~g~~~i~~~Dli~~--~~ 185 (339)
T PF09910_consen 148 ---SNPSLK-G--T-LVHD--YACFGINNFHKGVSGIHCLDLISG--KW 185 (339)
T ss_pred ---CCCCcC-c--e-Eeee--eEEEeccccccCCceEEEEEccCC--eE
Confidence 222221 1 1 2222 222333444556788999999999 88
No 210
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=58.96 E-value=19 Score=37.91 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=44.5
Q ss_pred CEEEEccCCCC--HHHHHHHHHHhCCCCCCCCCcceeEEE-eccccCCC-CChHHHHHHHHHhhhcCCCceEEecCCcch
Q 004198 582 PVKVFGDLHGQ--FGDLMRLFDEYGFPSTAGDITYIDYLF-LGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 582 ~i~viGDiHG~--~~~l~~~l~~~~~~~~~~~~~~~~~vf-LGD~vDrG-~~s~e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
.|.++|||=|. ...|.+.|..+...... ++++ -||...-| --+-++...|..+- -.++.+ |||+.
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~------D~vIaNgEn~~gG~Gi~~~~~~~L~~~G----vDviT~-GNH~~ 70 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQA------DLVIANGENTTHGKGLTLKIYEFLKQSG----VNYITM-GNHTW 70 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCC------CEEEEcCcccCCCCCCCHHHHHHHHhcC----CCEEEc-cchhc
Confidence 48899999999 45666666665432222 3444 79999766 45788888887663 355555 99986
No 211
>PRK04922 tolB translocation protein TolB; Provisional
Probab=57.17 E-value=3.3e+02 Score=30.69 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=72.1
Q ss_pred cCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCC
Q 004198 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP 203 (769)
Q Consensus 125 ~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P 203 (769)
...+|++|+.+. +-..+. ..+... . +.... +++.+++....++ ..++|++|+.++ +-..+....
T Consensus 227 ~~~l~~~dl~~g--~~~~l~---~~~g~~-~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g--~~~~lt~~~--- 291 (433)
T PRK04922 227 RSAIYVQDLATG--QRELVA---SFRGIN-G-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSR--QLTRLTNHF--- 291 (433)
T ss_pred CcEEEEEECCCC--CEEEec---cCCCCc-c-CceECCCCCEEEEEEeCCC---CceEEEEECCCC--CeEECccCC---
Confidence 356999999873 344442 222211 1 11122 3435544433333 257999999887 555554321
Q ss_pred CcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEe--CCEEEEEecccCCC
Q 004198 204 SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV--GARLHVTGGALRGG 281 (769)
Q Consensus 204 ~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~--~~~i~V~GG~~~~~ 281 (769)
..........++..++|.... .+ ..++|.++.... ..+.....+ .+....+.. +..|++..+ .. +
T Consensus 292 --~~~~~~~~spDG~~l~f~sd~-~g--~~~iy~~dl~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~-~~-~ 358 (433)
T PRK04922 292 --GIDTEPTWAPDGKSIYFTSDR-GG--RPQIYRVAASGG-SAERLTFQG-----NYNARASVSPDGKKIAMVHG-SG-G 358 (433)
T ss_pred --CCccceEECCCCCEEEEEECC-CC--CceEEEEECCCC-CeEEeecCC-----CCccCEEECCCCCEEEEEEC-CC-C
Confidence 111222334566555544321 11 247888887543 233222111 222222332 445555433 11 1
Q ss_pred CcccCCCcEEEEECCCCcEEecc
Q 004198 282 RAIEGEAAVAVLDTAAGVWLDRN 304 (769)
Q Consensus 282 ~~~~~~~~v~~yd~~t~~W~~~~ 304 (769)
...++++|+.+++.+.+.
T Consensus 359 -----~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 359 -----QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred -----ceeEEEEECCCCCeEECC
Confidence 236999999998887664
No 212
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=57.03 E-value=3.1e+02 Score=30.44 Aligned_cols=202 Identities=12% Similarity=0.083 Sum_probs=99.2
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccce-EEEEC-CEEEEECccCCC-----CCCcCcEEEEEccCCcceEEEeeecC
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHA-AAAVG-TMVVFQGGIGPA-----GHSTDDLYVLDLTNDKFKWHRVVVQG 147 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs-~~~~~-~~Iyv~GG~~~~-----~~~~~dl~~~d~~t~~~~W~~~~~~g 147 (769)
..++++|+.+++...-. ..+..++ ++-.. +..+++...... ......+|+..+.+....=..+-
T Consensus 150 ~~l~v~Dl~tg~~l~d~------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf--- 220 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDG------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF--- 220 (414)
T ss_dssp EEEEEEETTTTEEEEEE------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE---
T ss_pred EEEEEEECCCCcCcCCc------ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE---
Confidence 46999999999544211 2233333 33333 344444443332 22367799999887432211221
Q ss_pred CCCCCcc-ccEEEEECCcEEEEEecCCCCCccCceeEEeCCCC---CceEEEcCCCCCCCCcccccEEEEecCCEEEEEc
Q 004198 148 QGPGPRY-GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK---PYVWQRLNPEGDRPSARMYATASARSDGMFLLCG 223 (769)
Q Consensus 148 ~~p~~R~-~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~---~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~G 223 (769)
..+.... ...+....++..+++.-..+.. .+++|.+|.... ...|..+... .... ...+...++.+|+.-
T Consensus 221 e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~~-~~~v~~~~~~~yi~T 294 (414)
T PF02897_consen 221 EEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPR----EDGV-EYYVDHHGDRLYILT 294 (414)
T ss_dssp C-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEES----SSS--EEEEEEETTEEEEEE
T ss_pred eecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCC----CCce-EEEEEccCCEEEEee
Confidence 2222222 2233233443443433333333 589999999874 3478887542 1111 223334577888865
Q ss_pred ccCCCCCcccceEEEecCCCC--ceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECC-CCcE
Q 004198 224 GRDASGAPLADAYGLLMHRNG--QWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTA-AGVW 300 (769)
Q Consensus 224 G~~~~~~~l~d~~~ld~~~~~--~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~-t~~W 300 (769)
..+ .....+...+..... .|.-..++.. ....--.+...++.|++.--.+. ...+.+|+.. +..-
T Consensus 295 n~~---a~~~~l~~~~l~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~Lvl~~~~~~-------~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 295 NDD---APNGRLVAVDLADPSPAEWWTVLIPED--EDVSLEDVSLFKDYLVLSYRENG-------SSRLRVYDLDDGKES 362 (414)
T ss_dssp -TT----TT-EEEEEETTSTSGGGEEEEEE--S--SSEEEEEEEEETTEEEEEEEETT-------EEEEEEEETT-TEEE
T ss_pred CCC---CCCcEEEEecccccccccceeEEcCCC--CceeEEEEEEECCEEEEEEEECC-------ccEEEEEECCCCcEE
Confidence 432 234567777776554 2442222211 11223344456888887753222 4568999998 4433
Q ss_pred Eec
Q 004198 301 LDR 303 (769)
Q Consensus 301 ~~~ 303 (769)
..+
T Consensus 363 ~~~ 365 (414)
T PF02897_consen 363 REI 365 (414)
T ss_dssp EEE
T ss_pred eee
Confidence 333
No 213
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=57.03 E-value=2.7e+02 Score=29.74 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=46.0
Q ss_pred CcEEEEECC-CCcEEEecCCCCCCcc-cccceEEEE-CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCC
Q 004198 75 NSVHLYDVL-TRKWTRIRPAGEPPSP-RAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (769)
Q Consensus 75 ~dv~~yD~~-~~~W~~l~~~g~~P~~-R~~hs~~~~-~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~ 151 (769)
+.+..|++. +++++.+... +.+ ...|.+..- ++.+|+..-. .+.+.+||+.++......+. ..+.
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~---~~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~---~~~~ 124 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAES---PLPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQ---IIEG 124 (330)
T ss_pred CcEEEEEECCCCceEEeeee---cCCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCcee---eccC
Confidence 456667775 4567655432 111 112222222 3467765421 35688888865321122221 1222
Q ss_pred CccccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCC
Q 004198 152 PRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQ 188 (769)
Q Consensus 152 ~R~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~ 188 (769)
...-|.+++. +++.+|+..- ..+.+++||+.+
T Consensus 125 ~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~ 157 (330)
T PRK11028 125 LEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSD 157 (330)
T ss_pred CCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECC
Confidence 2233555444 3446666442 124688888865
No 214
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=55.86 E-value=28 Score=37.45 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=28.4
Q ss_pred eEEEeccccCCC--CChHHHHHHHHHhhhcCCCceEEecCCcchh
Q 004198 616 DYLFLGDYVDRG--QHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 616 ~~vfLGD~vDrG--~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
-+||+||.|+-- .+...+|+-..+=.+.+.=-...+.||||+.
T Consensus 103 lVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDde 147 (379)
T KOG1432|consen 103 LVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDE 147 (379)
T ss_pred EEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEecccccc
Confidence 689999999862 1334444444444444545577899999974
No 215
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=55.50 E-value=16 Score=42.41 Aligned_cols=65 Identities=28% Similarity=0.379 Sum_probs=40.5
Q ss_pred CEEEEccCCCCHH------------HHHHH---HHHhCCCCCCCCCcceeEEE-eccccCCCC------ChHHHHHHHHH
Q 004198 582 PVKVFGDLHGQFG------------DLMRL---FDEYGFPSTAGDITYIDYLF-LGDYVDRGQ------HSLETITLLLA 639 (769)
Q Consensus 582 ~i~viGDiHG~~~------------~l~~~---l~~~~~~~~~~~~~~~~~vf-LGD~vDrG~------~s~e~l~ll~~ 639 (769)
.|+-..|+||.+. -+-++ +++..-.... .+++ .||+++..+ .....+.+|-.
T Consensus 28 ~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~------~llld~GD~~~G~~l~~~~~~g~~~~~~mN~ 101 (517)
T COG0737 28 TILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKN------VLLLDAGDLIQGSPLSDYLTKGEPTVDLLNA 101 (517)
T ss_pred EEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCC------eEEEeCCcccCCccccccccCCChHHHHHhh
Confidence 3788899999998 33333 3332211111 3344 999999844 34456666666
Q ss_pred hhhcCCCceEEecCCcch
Q 004198 640 LKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 640 lk~~~p~~v~llrGNHE~ 657 (769)
++ -=.+..||||.
T Consensus 102 m~-----yDa~tiGNHEF 114 (517)
T COG0737 102 LG-----YDAMTLGNHEF 114 (517)
T ss_pred cC-----CcEEeeccccc
Confidence 64 34678899996
No 216
>PRK00178 tolB translocation protein TolB; Provisional
Probab=55.41 E-value=3.4e+02 Score=30.36 Aligned_cols=186 Identities=16% Similarity=0.157 Sum_probs=90.1
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCcc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~ 154 (769)
..+|++|+.+++-+++...... -...+...-+++|++....+ + ..++|++|+.+ .+..++.. .+. .
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~---~~~~~~SpDG~~la~~~~~~--g--~~~Iy~~d~~~--~~~~~lt~---~~~--~ 288 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGL---NGAPAWSPDGSKLAFVLSKD--G--NPEIYVMDLAS--RQLSRVTN---HPA--I 288 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCC---cCCeEECCCCCEEEEEEccC--C--CceEEEEECCC--CCeEEccc---CCC--C
Confidence 4799999999988877643110 01111111234555433211 1 25799999998 44666631 111 1
Q ss_pred ccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCccc
Q 004198 155 GHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (769)
Q Consensus 155 ~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~ 233 (769)
....... +++.+++.....+ ...+|.+|+.++ +++.+...+ ..........++..+++...... ..
T Consensus 289 ~~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g--~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~---~~ 355 (430)
T PRK00178 289 DTEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGG--RAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG---NF 355 (430)
T ss_pred cCCeEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEeecCC-----CCccceEECCCCCEEEEEEccCC---ce
Confidence 1122222 3335554432222 247899999877 676664321 11222333456555444433221 23
Q ss_pred ceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCc
Q 004198 234 DAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (769)
Q Consensus 234 d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~ 299 (769)
+++.++..+. ....+... . ........-+++.+++.....+ ...+++.+...+.
T Consensus 356 ~l~~~dl~tg---~~~~lt~~-~--~~~~p~~spdg~~i~~~~~~~g------~~~l~~~~~~g~~ 409 (430)
T PRK00178 356 HVAAQDLQRG---SVRILTDT-S--LDESPSVAPNGTMLIYATRQQG------RGVLMLVSINGRV 409 (430)
T ss_pred EEEEEECCCC---CEEEccCC-C--CCCCceECCCCCEEEEEEecCC------ceEEEEEECCCCc
Confidence 5888887654 23333221 1 1111122235666666543221 2347788876543
No 217
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=55.09 E-value=2.6e+02 Score=28.90 Aligned_cols=140 Identities=12% Similarity=0.101 Sum_probs=65.7
Q ss_pred eEEEeee--cCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecC
Q 004198 139 KWHRVVV--QGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSD 216 (769)
Q Consensus 139 ~W~~~~~--~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~ 216 (769)
.|+..++ ++..+.|-.......-..+.++..||. ..+++.|++++ +.+..--. ..-+-|+.+....
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G--~i~r~~rG----HtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDG--RIQREYRG----HTDYVHSVVGRNA 167 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCC--EEEEEEcC----Ccceeeeeeeccc
Confidence 4665543 123333434333322244466666763 35788999998 54443221 3345577776433
Q ss_pred CEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcc--cce--EEEEeCCEEEEEecccCCCCcccCCCcEEE
Q 004198 217 GMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPR--YQH--AAVFVGARLHVTGGALRGGRAIEGEAAVAV 292 (769)
Q Consensus 217 g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R--~~h--s~~~~~~~i~V~GG~~~~~~~~~~~~~v~~ 292 (769)
+-=++.|+.++. ..+|...... .-+-......+...| .+- .+...+..-.|+||- ..+-.
T Consensus 168 ~~qilsG~EDGt----vRvWd~kt~k--~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG----------p~lsl 231 (325)
T KOG0649|consen 168 NGQILSGAEDGT----VRVWDTKTQK--HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG----------PKLSL 231 (325)
T ss_pred CcceeecCCCcc----EEEEeccccc--eeEEeccccChhhcCcccCceeEEEeccCceEEecCC----------CceeE
Confidence 233445665432 3445443331 111111112212223 222 444556677788872 12455
Q ss_pred EECCCCcEEeccCC
Q 004198 293 LDTAAGVWLDRNGL 306 (769)
Q Consensus 293 yd~~t~~W~~~~~~ 306 (769)
+++.+.+=+.+-++
T Consensus 232 whLrsse~t~vfpi 245 (325)
T KOG0649|consen 232 WHLRSSESTCVFPI 245 (325)
T ss_pred EeccCCCceEEEec
Confidence 55555554444333
No 218
>PRK00178 tolB translocation protein TolB; Provisional
Probab=54.73 E-value=3.5e+02 Score=30.28 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=71.3
Q ss_pred CcEEEEEccCCcceEEEeeecCCCCCCccccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCC
Q 004198 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (769)
Q Consensus 126 ~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~ 204 (769)
..+|++|+.+. +-+++. ..+. ........ +++.+++....++ ..++|++|+.+. ....+....
T Consensus 223 ~~l~~~~l~~g--~~~~l~---~~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~---- 286 (430)
T PRK00178 223 PRIFVQNLDTG--RREQIT---NFEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASR--QLSRVTNHP---- 286 (430)
T ss_pred CEEEEEECCCC--CEEEcc---CCCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCC--CeEEcccCC----
Confidence 47999999883 345552 1111 11122222 3334444332222 258999999987 666665321
Q ss_pred cccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEE-eC-CEEEEEecccCCCC
Q 004198 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF-VG-ARLHVTGGALRGGR 282 (769)
Q Consensus 205 ~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~-~~-~~i~V~GG~~~~~~ 282 (769)
..........++.-++|.... . ...++|.++.... .++..... ..+...... -+ +.|++... ..+
T Consensus 287 -~~~~~~~~spDg~~i~f~s~~-~--g~~~iy~~d~~~g-~~~~lt~~-----~~~~~~~~~Spdg~~i~~~~~-~~~-- 353 (430)
T PRK00178 287 -AIDTEPFWGKDGRTLYFTSDR-G--GKPQIYKVNVNGG-RAERVTFV-----GNYNARPRLSADGKTLVMVHR-QDG-- 353 (430)
T ss_pred -CCcCCeEECCCCCEEEEEECC-C--CCceEEEEECCCC-CEEEeecC-----CCCccceEECCCCCEEEEEEc-cCC--
Confidence 111222334565444443211 1 1247888887644 23222211 111122222 23 44444432 221
Q ss_pred cccCCCcEEEEECCCCcEEeccC
Q 004198 283 AIEGEAAVAVLDTAAGVWLDRNG 305 (769)
Q Consensus 283 ~~~~~~~v~~yd~~t~~W~~~~~ 305 (769)
...++++|+.+++++.+..
T Consensus 354 ----~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 ----NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ----ceEEEEEECCCCCEEEccC
Confidence 2359999999998877654
No 219
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=54.52 E-value=18 Score=38.45 Aligned_cols=68 Identities=22% Similarity=0.172 Sum_probs=35.0
Q ss_pred EEEEccCCCCHHH----------HHHHHHHhCCCC-CCCCCcceeEEEeccccCCCCC-----hHHHHHHHHHhhhcCCC
Q 004198 583 VKVFGDLHGQFGD----------LMRLFDEYGFPS-TAGDITYIDYLFLGDYVDRGQH-----SLETITLLLALKIEYPE 646 (769)
Q Consensus 583 i~viGDiHG~~~~----------l~~~l~~~~~~~-~~~~~~~~~~vfLGD~vDrG~~-----s~e~l~ll~~lk~~~p~ 646 (769)
|+...|+||++.. +..+++...... .++ +..-+|-.||++.-.+. ..-++.++-.+. -
T Consensus 3 Il~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~--~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g----~ 76 (285)
T cd07405 3 ILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQG--GYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVG----Y 76 (285)
T ss_pred EEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccC--CCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhC----C
Confidence 6778999998633 444554442110 000 11134449999843232 233444554443 2
Q ss_pred ceEEecCCcch
Q 004198 647 NVHLIRGNHEA 657 (769)
Q Consensus 647 ~v~llrGNHE~ 657 (769)
.+. ..||||.
T Consensus 77 Da~-~~GNHEf 86 (285)
T cd07405 77 DAM-AVGNHEF 86 (285)
T ss_pred cEE-eeccccc
Confidence 344 4499995
No 220
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=53.74 E-value=19 Score=38.20 Aligned_cols=37 Identities=24% Similarity=0.167 Sum_probs=23.1
Q ss_pred EEEeccccCCCCCh-------HHHHHHHHHhhhcCCCceEEecCCcchh
Q 004198 617 YLFLGDYVDRGQHS-------LETITLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 617 ~vfLGD~vDrG~~s-------~e~l~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
+|.-||+++.-+.+ .-.+.++-.+ .--.+..||||.-
T Consensus 54 lld~GD~~qGs~~~~~~~~~g~~~~~~mN~m-----gyDa~tlGNHEFd 97 (282)
T cd07407 54 LVDTGDLHDGNGLSDASPPPGSYSNPIFRMM-----PYDLLTIGNHELY 97 (282)
T ss_pred EEeCCCccCCeeceeeecCCChHHHHHHHhc-----CCcEEeecccccC
Confidence 45599999865432 2234444444 3457889999983
No 221
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=53.52 E-value=29 Score=36.23 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=42.1
Q ss_pred CEEEEccCCCCHH--HHHHHHHHhCCCCCCCCCcceeEEE-eccccCCC-CChHHHHHHHHHhhhcCCCceEEecCCcch
Q 004198 582 PVKVFGDLHGQFG--DLMRLFDEYGFPSTAGDITYIDYLF-LGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 582 ~i~viGDiHG~~~--~l~~~l~~~~~~~~~~~~~~~~~vf-LGD~vDrG-~~s~e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
.|.++|||=|... .+.+.|..+...... ++++ -||..--| .-+-++...|..+.. .++.+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~------D~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI------DFVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC------CEEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-ccccc
Confidence 3789999999864 345555554321111 3444 79998766 367788888877653 44444 99985
No 222
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=52.95 E-value=2.4e+02 Score=27.89 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=42.7
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEE-CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R 153 (769)
+.+..||..+.+-...... ..... ..+... ++..++.++. ...+.+||..+.. ..... . ....
T Consensus 31 g~i~i~~~~~~~~~~~~~~---~~~~i-~~~~~~~~~~~l~~~~~------~~~i~i~~~~~~~--~~~~~---~-~~~~ 94 (289)
T cd00200 31 GTIKVWDLETGELLRTLKG---HTGPV-RDVAASADGTYLASGSS------DKTIRLWDLETGE--CVRTL---T-GHTS 94 (289)
T ss_pred cEEEEEEeeCCCcEEEEec---CCcce-eEEEECCCCCEEEEEcC------CCeEEEEEcCccc--ceEEE---e-ccCC
Confidence 4677888876652211111 00011 122222 3334555553 3458899988732 11111 0 0111
Q ss_pred cccEEEEECCcEEEEEecCCCCCccCceeEEeCCCC
Q 004198 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (769)
Q Consensus 154 ~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 189 (769)
.-.++....+..+++.|+.+ ..+.+||+.+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~ 125 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRD-----KTIKVWDVETG 125 (289)
T ss_pred cEEEEEEcCCCCEEEEecCC-----CeEEEEECCCc
Confidence 12233333444566666533 35888888754
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=52.36 E-value=3.9e+02 Score=30.09 Aligned_cols=191 Identities=12% Similarity=0.086 Sum_probs=91.3
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCcc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~ 154 (769)
..+|++|+.+++-+.+... +..-.......-+++|++....++ ..++|++|+.+. +..++.. ... .
T Consensus 228 ~~l~~~dl~~g~~~~l~~~---~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g--~~~~lt~---~~~--~ 293 (433)
T PRK04922 228 SAIYVQDLATGQRELVASF---RGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSR--QLTRLTN---HFG--I 293 (433)
T ss_pred cEEEEEECCCCCEEEeccC---CCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCC--CeEECcc---CCC--C
Confidence 4699999999888777643 111111111122345655432211 257999999883 3445421 111 1
Q ss_pred ccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccc
Q 004198 155 GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLAD 234 (769)
Q Consensus 155 ~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d 234 (769)
........++..+++...... ..++|.+|..++ +++.+...+ ..........+|..+++...... ...
T Consensus 294 ~~~~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g--~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~~~---~~~ 361 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRGG--RPQIYRVAASGG--SAERLTFQG-----NYNARASVSPDGKKIAMVHGSGG---QYR 361 (433)
T ss_pred ccceEECCCCCEEEEEECCCC--CceEEEEECCCC--CeEEeecCC-----CCccCEEECCCCCEEEEEECCCC---cee
Confidence 112223333333343332211 247999998877 666665321 12223344456655444322211 136
Q ss_pred eEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEec
Q 004198 235 AYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDR 303 (769)
Q Consensus 235 ~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~ 303 (769)
++.++.... ....+... + ........-+++.+++..... + ...++.++++...=+.+
T Consensus 362 I~v~d~~~g---~~~~Lt~~-~--~~~~p~~spdG~~i~~~s~~~-g-----~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 362 IAVMDLSTG---SVRTLTPG-S--LDESPSFAPNGSMVLYATREG-G-----RGVLAAVSTDGRVRQRL 418 (433)
T ss_pred EEEEECCCC---CeEECCCC-C--CCCCceECCCCCEEEEEEecC-C-----ceEEEEEECCCCceEEc
Confidence 778887543 33333221 1 111112223566556554321 1 34588888876543333
No 224
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=52.29 E-value=2.9e+02 Score=28.77 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccC-----
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIG----- 119 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~----- 119 (769)
+++|||.---+.... +-+.+.+-+..-..|..+..... .-.+.--.+.+++.||+||...
T Consensus 200 ~g~LyLtTRgt~~~~-------------~GS~L~rs~d~G~~w~slrfp~n--vHhtnlPFakvgD~l~mFgsERA~~EW 264 (367)
T PF12217_consen 200 DGVLYLTTRGTLPTN-------------PGSSLHRSDDNGQNWSSLRFPNN--VHHTNLPFAKVGDVLYMFGSERAENEW 264 (367)
T ss_dssp TTEEEEEEEES-TTS----------------EEEEESSTTSS-EEEE-TT-----SS---EEEETTEEEEEEE-SSTT-S
T ss_pred CCEEEEEEcCcCCCC-------------CcceeeeecccCCchhhcccccc--ccccCCCceeeCCEEEEEecccccccc
Confidence 677887654332221 34678888888889998875311 1223334677899999999642
Q ss_pred CCCCC-------cCcEE--EEEccC---CcceEEEeee---cCCCCCCccccEEEEECCc-EEEEEecCC
Q 004198 120 PAGHS-------TDDLY--VLDLTN---DKFKWHRVVV---QGQGPGPRYGHVMDLVSQR-YLVSVSGND 173 (769)
Q Consensus 120 ~~~~~-------~~dl~--~~d~~t---~~~~W~~~~~---~g~~p~~R~~hs~~~~~~~-~l~v~GG~~ 173 (769)
+.+.. ....+ +.++.+ ++-+|..+.. +|.....-.|...++++++ ..|+|||.+
T Consensus 265 E~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 265 EGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp STT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred ccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 11111 11222 223332 2245777643 2444555556666666655 567789864
No 225
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=51.09 E-value=1.8e+02 Score=31.68 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=80.2
Q ss_pred ceEEEE--CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCc
Q 004198 103 HAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSD 180 (769)
Q Consensus 103 hs~~~~--~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~d 180 (769)
|.+... ++.+|+.. .-.+.+++|+......+..........+..-=.|....-+++.+|+..- ..+.
T Consensus 147 H~v~~~pdg~~v~v~d------lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e-----~s~~ 215 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPD------LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE-----LSNT 215 (345)
T ss_dssp EEEEE-TTSSEEEEEE------TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET-----TTTE
T ss_pred eeEEECCCCCEEEEEe------cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC-----CCCc
Confidence 454444 34677643 1246799999887443344422111112111223332335568999764 3455
Q ss_pred eeEEeCCCCCceEEEcCCCCCCC---Ccc-cccEEEEecCC-EEEEEcccCCCCCcccceEEEec-CCCCceEEEeCCCC
Q 004198 181 AWALDTAQKPYVWQRLNPEGDRP---SAR-MYATASARSDG-MFLLCGGRDASGAPLADAYGLLM-HRNGQWEWTLAPGV 254 (769)
Q Consensus 181 v~~~d~~~~~~~W~~v~~~~~~P---~~r-~~hsa~~~~~g-~l~v~GG~~~~~~~l~d~~~ld~-~~~~~W~W~~~~~~ 254 (769)
|..|+.......++.+......| ... ..+......++ .+|+.-. . .+.+..|+. ..++..+....-..
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-~-----~~sI~vf~~d~~~g~l~~~~~~~~ 289 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-G-----SNSISVFDLDPATGTLTLVQTVPT 289 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-T-----TTEEEEEEECTTTTTEEEEEEEEE
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-c-----CCEEEEEEEecCCCceEEEEEEeC
Confidence 66666652222555543222122 222 22333344566 5666432 1 355666766 33445544433110
Q ss_pred CCCcccceEEEE--eCCEEEEEecccCCCCcccCCCcEEEE--ECCCCcEEeccC
Q 004198 255 APSPRYQHAAVF--VGARLHVTGGALRGGRAIEGEAAVAVL--DTAAGVWLDRNG 305 (769)
Q Consensus 255 ~P~~R~~hs~~~--~~~~i~V~GG~~~~~~~~~~~~~v~~y--d~~t~~W~~~~~ 305 (769)
.+..-..+++ -+..+||.... .+.+.+| |.+++.+..+..
T Consensus 290 --~G~~Pr~~~~s~~g~~l~Va~~~---------s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 290 --GGKFPRHFAFSPDGRYLYVANQD---------SNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp --SSSSEEEEEE-TTSSEEEEEETT---------TTEEEEEEEETTTTEEEEEEE
T ss_pred --CCCCccEEEEeCCCCEEEEEecC---------CCeEEEEEEeCCCCcEEEecc
Confidence 0111123333 25556665432 2335554 678888888764
No 226
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=50.21 E-value=3.8e+02 Score=30.33 Aligned_cols=128 Identities=19% Similarity=0.260 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCC-cEEEecCCCCCCcccccceEEEE--CCEEEEECccCCC
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTR-KWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPA 121 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~-~W~~l~~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~ 121 (769)
++++++-||++ ..+-.||..+. .|..--.-|.| -. .++.+ |..|...||
T Consensus 165 ~~hivvtGsYD-------------------g~vrl~DtR~~~~~v~elnhg~p---Ve--~vl~lpsgs~iasAgG---- 216 (487)
T KOG0310|consen 165 NDHIVVTGSYD-------------------GKVRLWDTRSLTSRVVELNHGCP---VE--SVLALPSGSLIASAGG---- 216 (487)
T ss_pred CCeEEEecCCC-------------------ceEEEEEeccCCceeEEecCCCc---ee--eEEEcCCCCEEEEcCC----
Confidence 67899999976 45677888876 55533222211 00 11111 223444444
Q ss_pred CCCcCcEEEEEccCCcceEEEeeecCCCCCCcccc-----EEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEc
Q 004198 122 GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGH-----VMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 196 (769)
Q Consensus 122 ~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~h-----s~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v 196 (769)
+.+-++|+.++. .++..+..| ++.+..+..-++-||.++. |-+||+. .|+.+
T Consensus 217 ----n~vkVWDl~~G~----------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-----VKVfd~t----~~Kvv 273 (487)
T KOG0310|consen 217 ----NSVKVWDLTTGG----------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-----VKVFDTT----NYKVV 273 (487)
T ss_pred ----CeEEEEEecCCc----------eehhhhhcccceEEEEEeecCCceEeecccccc-----eEEEEcc----ceEEE
Confidence 568888887632 344445534 3333344455666776653 6778843 36665
Q ss_pred CCCCCCCCcccccEEEEecCCEEEEEcccC
Q 004198 197 NPEGDRPSARMYATASARSDGMFLLCGGRD 226 (769)
Q Consensus 197 ~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~ 226 (769)
....- |.|- -++.+..++.-.+.|..+
T Consensus 274 ~s~~~-~~pv--Lsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 274 HSWKY-PGPV--LSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred Eeeec-ccce--eeEEecCCCceEEEeccc
Confidence 54321 2221 233344556666666543
No 227
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=49.21 E-value=56 Score=34.61 Aligned_cols=76 Identities=13% Similarity=0.238 Sum_probs=48.4
Q ss_pred CCEEEEccCCCC----HHHHHHHHHHhC-CCCCCCCCcceeEEEeccccCCC----CCh----HHHHHHHHHh-hhcCC-
Q 004198 581 APVKVFGDLHGQ----FGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRG----QHS----LETITLLLAL-KIEYP- 645 (769)
Q Consensus 581 ~~i~viGDiHG~----~~~l~~~l~~~~-~~~~~~~~~~~~~vfLGD~vDrG----~~s----~e~l~ll~~l-k~~~p- 645 (769)
..++|+||+|=+ ++.|.++|..+. ..+++ -.+.-+||+|+++-+. ..+ .|-++-|..+ ..+||
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~--~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPEN--ELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCccc--CCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 458899999954 677888888873 21211 1234789999999763 222 2333344332 23444
Q ss_pred ----CceEEecCCcchh
Q 004198 646 ----ENVHLIRGNHEAA 658 (769)
Q Consensus 646 ----~~v~llrGNHE~~ 658 (769)
.++++|.|-.|-.
T Consensus 106 L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHhcCeEEEECCCCCCC
Confidence 6999999999974
No 228
>PRK04043 tolB translocation protein TolB; Provisional
Probab=49.17 E-value=4.3e+02 Score=29.73 Aligned_cols=154 Identities=10% Similarity=0.029 Sum_probs=77.5
Q ss_pred CcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCc
Q 004198 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA 205 (769)
Q Consensus 126 ~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~ 205 (769)
.++|++|+.+. +=+++. ..+. ........-+++.+++.-..++ ..++|.+|+.++ .++.+.... .
T Consensus 213 ~~Iyv~dl~tg--~~~~lt---~~~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g--~~~~LT~~~---~- 277 (419)
T PRK04043 213 PTLYKYNLYTG--KKEKIA---SSQG-MLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTK--TLTQITNYP---G- 277 (419)
T ss_pred CEEEEEECCCC--cEEEEe---cCCC-cEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCC--cEEEcccCC---C-
Confidence 38999999883 334442 1111 1111111224445554433332 368999999887 788876431 1
Q ss_pred ccccEEEEecCC-EEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcc
Q 004198 206 RMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (769)
Q Consensus 206 r~~hsa~~~~~g-~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~ 284 (769)
.........|| .|++..... -..++|.++.... +...+... +.+.. ...-+++.+++-.........
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g---~~~rlt~~---g~~~~-~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSG---SVEQVVFH---GKNNS-SVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred -ccCccEECCCCCEEEEEECCC----CCceEEEEECCCC---CeEeCccC---CCcCc-eECCCCCEEEEEEcCCCcccC
Confidence 22233444666 455443321 1368999988754 22223211 11222 222244433333322211101
Q ss_pred cCCCcEEEEECCCCcEEeccCC
Q 004198 285 EGEAAVAVLDTAAGVWLDRNGL 306 (769)
Q Consensus 285 ~~~~~v~~yd~~t~~W~~~~~~ 306 (769)
.....++++|++++.++.+...
T Consensus 346 ~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCcEEEEEECCCCCeEECCCC
Confidence 1135799999999999887653
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=49.06 E-value=4.3e+02 Score=29.68 Aligned_cols=147 Identities=17% Similarity=0.185 Sum_probs=69.2
Q ss_pred CcEEEEEccCCcceEEEeeecCCCCCCccccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCC
Q 004198 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (769)
Q Consensus 126 ~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~ 204 (769)
..+|++|+.+.. =.++. ..+.. ..+.... +++.+++....++ ..++|.+|..+. ....+....
T Consensus 220 ~~I~~~dl~~g~--~~~l~---~~~g~--~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~---- 283 (427)
T PRK02889 220 PVVYVHDLATGR--RRVVA---NFKGS--NSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGS--GLRRLTQSS---- 283 (427)
T ss_pred cEEEEEECCCCC--EEEee---cCCCC--ccceEECCCCCEEEEEEccCC---CceEEEEECCCC--CcEECCCCC----
Confidence 469999998743 33332 12211 1122222 3335544433333 367999998776 455554321
Q ss_pred cccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEE-eCCEEEEEecccCCCCc
Q 004198 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF-VGARLHVTGGALRGGRA 283 (769)
Q Consensus 205 ~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~-~~~~i~V~GG~~~~~~~ 283 (769)
. .........||..++|.... .+ ..++|.++.... ..+-....+ .+....++ -+++.+++.....+
T Consensus 284 ~-~~~~~~wSpDG~~l~f~s~~-~g--~~~Iy~~~~~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g--- 350 (427)
T PRK02889 284 G-IDTEPFFSPDGRSIYFTSDR-GG--APQIYRMPASGG-AAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG--- 350 (427)
T ss_pred C-CCcCeEEcCCCCEEEEEecC-CC--CcEEEEEECCCC-ceEEEecCC-----CCcCceEECCCCCEEEEEEccCC---
Confidence 1 11223344677554543221 11 246888876533 222222111 11222222 24444444332211
Q ss_pred ccCCCcEEEEECCCCcEEecc
Q 004198 284 IEGEAAVAVLDTAAGVWLDRN 304 (769)
Q Consensus 284 ~~~~~~v~~yd~~t~~W~~~~ 304 (769)
...++++|+.+++.+.+.
T Consensus 351 ---~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 351 ---AFKLYVQDLATGQVTALT 368 (427)
T ss_pred ---cEEEEEEECCCCCeEEcc
Confidence 236999999988877664
No 230
>PRK04043 tolB translocation protein TolB; Provisional
Probab=48.99 E-value=4.4e+02 Score=29.71 Aligned_cols=192 Identities=11% Similarity=0.091 Sum_probs=100.1
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEE-CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R 153 (769)
.++|.+|+.+++=+++.... .........- +.+|.+.-... ...++|++|+.+ ..++++.. .+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~----g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~--g~~~~LT~---~~~-- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ----GMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNT--KTLTQITN---YPG-- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecCC----CcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCC--CcEEEccc---CCC--
Confidence 48999999998877776431 1111111222 34555543321 136899999988 55887732 221
Q ss_pred cccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCC--
Q 004198 154 YGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGA-- 230 (769)
Q Consensus 154 ~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~-- 230 (769)
........ +++.|++.....+ ..++|.+|+.++ +.+++...+. . .. ....+|..+++-.......
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g--~~~rlt~~g~-----~-~~-~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSG--SVEQVVFHGK-----N-NS-SVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC---CceEEEEECCCC--CeEeCccCCC-----c-Cc-eECCCCCEEEEEEcCCCcccC
Confidence 11122222 3345555543322 358999999887 6666654321 1 12 3345665555544322211
Q ss_pred -cccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccC
Q 004198 231 -PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 305 (769)
Q Consensus 231 -~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 305 (769)
...+++.++.... .+..+... ....+....-+++.++|-.... + ...+++++.+.+.=..+..
T Consensus 346 ~~~~~I~v~d~~~g---~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~-~-----~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 346 KNTFNLYLISTNSD---YIRRLTAN---GVNQFPRFSSDGGSIMFIKYLG-N-----QSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCCcEEEEEECCCC---CeEECCCC---CCcCCeEECCCCCEEEEEEccC-C-----cEEEEEEecCCCeeEEeec
Confidence 2357888887655 44444432 1222222223555444433221 1 3458899887765555543
No 231
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=48.98 E-value=31 Score=37.29 Aligned_cols=69 Identities=22% Similarity=0.137 Sum_probs=38.7
Q ss_pred EEEEccCCCCHH------HHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCC-------------hHHHHHHHHHhhhc
Q 004198 583 VKVFGDLHGQFG------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-------------SLETITLLLALKIE 643 (769)
Q Consensus 583 i~viGDiHG~~~------~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~-------------s~e~l~ll~~lk~~ 643 (769)
|+-.-|+||++. .+..+++........ .....-+|.-||.+.-++. ..-++.++-++.
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~-~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g-- 79 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAA-EYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG-- 79 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhc-cCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC--
Confidence 567789999963 343444443211000 0011245569999875442 334556665553
Q ss_pred CCCceEEecCCcch
Q 004198 644 YPENVHLIRGNHEA 657 (769)
Q Consensus 644 ~p~~v~llrGNHE~ 657 (769)
-=.+..||||.
T Consensus 80 ---~Da~tlGNHEF 90 (313)
T cd08162 80 ---VQAIALGNHEF 90 (313)
T ss_pred ---CcEEecccccc
Confidence 34677999995
No 232
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=48.79 E-value=94 Score=30.34 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=59.6
Q ss_pred ccccCHHHHHHHHHHHHHHHhcCCceeeecCCEEEEccCCCCHHHHHHHHHHhCCCCC----------------------
Q 004198 551 RFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPST---------------------- 608 (769)
Q Consensus 551 ~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~viGDiHG~~~~l~~~l~~~~~~~~---------------------- 608 (769)
..++++++|.+=|.+..+.+.++-.= ...++||=++|.+--+-.+++.+.++.+
T Consensus 9 evLisee~I~~ri~ela~~I~~~y~g----~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~ 84 (178)
T COG0634 9 EVLISEEQIKARIKELAAQITEDYGG----KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKIL 84 (178)
T ss_pred eEeeCHHHHHHHHHHHHHHHHHhhCC----CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEe
Confidence 45789999998777766665544221 5688999999999877777777766533
Q ss_pred ---CCCCcceeEEEeccccCCCCChHHHHHHHHH
Q 004198 609 ---AGDITYIDYLFLGDYVDRGQHSLETITLLLA 639 (769)
Q Consensus 609 ---~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~ 639 (769)
+.++...+++++=|++|-|.-=-.+..+|..
T Consensus 85 kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~ 118 (178)
T COG0634 85 KDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKE 118 (178)
T ss_pred cccccCCCCCeEEEEecccccChhHHHHHHHHHh
Confidence 1122234789999999988766666666554
No 233
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=46.57 E-value=3.9e+02 Score=28.49 Aligned_cols=142 Identities=9% Similarity=0.005 Sum_probs=64.7
Q ss_pred CcEEEEECCC-CcEEEecCCCCCCcccccceEEE--ECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCC
Q 004198 75 NSVHLYDVLT-RKWTRIRPAGEPPSPRAAHAAAA--VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (769)
Q Consensus 75 ~dv~~yD~~~-~~W~~l~~~g~~P~~R~~hs~~~--~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~ 151 (769)
+.+..||+.+ .+++.+.... ..-..+.++. -++.+|+.+.. .+.+..|++..+ .++..+.. .+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~~------~~~i~~~~~~~~-g~l~~~~~---~~~ 78 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVD---VPGQVQPMVISPDKRHLYVGVRP------EFRVLSYRIADD-GALTFAAE---SPL 78 (330)
T ss_pred CCEEEEEECCCCceeeeeEEe---cCCCCccEEECCCCCEEEEEECC------CCcEEEEEECCC-CceEEeee---ecC
Confidence 4678888864 5777665431 1111222322 24577775431 255777877632 34554432 111
Q ss_pred CccccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCC-EEEEEcccCCCC
Q 004198 152 PRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDG-MFLLCGGRDASG 229 (769)
Q Consensus 152 ~R~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g-~l~v~GG~~~~~ 229 (769)
+..-+.++.. .++.+|+.... .+.+.+|+++++......+... +.....|.+....++ .+|+.. ..
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~---~~~~~~~~~~~~p~g~~l~v~~-~~--- 146 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYN-----ANCVSVSPLDKDGIPVAPIQII---EGLEGCHSANIDPDNRTLWVPC-LK--- 146 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcC-----CCeEEEEEECCCCCCCCceeec---cCCCcccEeEeCCCCCEEEEee-CC---
Confidence 1111223233 44466665422 2456777775432111112111 111223565556666 455533 21
Q ss_pred CcccceEEEecCCC
Q 004198 230 APLADAYGLLMHRN 243 (769)
Q Consensus 230 ~~l~d~~~ld~~~~ 243 (769)
.+-++.|+....
T Consensus 147 --~~~v~v~d~~~~ 158 (330)
T PRK11028 147 --EDRIRLFTLSDD 158 (330)
T ss_pred --CCEEEEEEECCC
Confidence 244666666543
No 234
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=42.44 E-value=40 Score=40.30 Aligned_cols=66 Identities=18% Similarity=0.076 Sum_probs=39.5
Q ss_pred CEEEEccCCCCHHH----------------HHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChH-------------H
Q 004198 582 PVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-------------E 632 (769)
Q Consensus 582 ~i~viGDiHG~~~~----------------l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~-------------e 632 (769)
.|+-..|+||++.. +..++++...... ..-+|-.||++...+.+- -
T Consensus 27 ~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p 101 (649)
T PRK09420 27 RIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAK-----NSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHP 101 (649)
T ss_pred EEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCC-----CEEEEECCCcCCCchhhhhhhhccccCCCcch
Confidence 37888999999743 3334444321111 124555999998665431 2
Q ss_pred HHHHHHHhhhcCCCceEEecCCcch
Q 004198 633 TITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 633 ~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
++..+-.|. --....||||.
T Consensus 102 ~i~amN~lg-----yDa~tlGNHEF 121 (649)
T PRK09420 102 VYKAMNTLD-----YDVGNLGNHEF 121 (649)
T ss_pred HHHHHHhcC-----CcEEeccchhh
Confidence 455555553 45778999995
No 235
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=41.10 E-value=40 Score=37.88 Aligned_cols=73 Identities=18% Similarity=0.086 Sum_probs=38.3
Q ss_pred CCEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccC--CCC--ChHHHHHHHHHhhhcCCCceEEecCCcc
Q 004198 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVD--RGQ--HSLETITLLLALKIEYPENVHLIRGNHE 656 (769)
Q Consensus 581 ~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vD--rG~--~s~e~l~ll~~lk~~~p~~v~llrGNHE 656 (769)
..+.|+||+ |+...-...+....... +.+ -+|++||+.- ..+ ..-+-..++.-+...- -.++.-||||
T Consensus 148 ~~~~i~GDl-G~~~~~~s~~~~~~~~~-k~d----~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~v--Pymv~~GNHE 219 (452)
T KOG1378|consen 148 TRAAIFGDM-GCTEPYTSTLRNQEENL-KPD----AVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYV--PYMVCSGNHE 219 (452)
T ss_pred eeEEEEccc-cccccccchHhHHhccc-CCc----EEEEecchhhcCCCCccchHHHHhhhhhhhccC--ceEEeccccc
Confidence 348999998 44433222222222111 111 5788999874 222 1233333333333233 3577899999
Q ss_pred hhhhh
Q 004198 657 AADIN 661 (769)
Q Consensus 657 ~~~~~ 661 (769)
.-..+
T Consensus 220 ~d~~~ 224 (452)
T KOG1378|consen 220 IDWPP 224 (452)
T ss_pred ccCCC
Confidence 76653
No 236
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=40.68 E-value=43 Score=39.94 Aligned_cols=65 Identities=20% Similarity=0.087 Sum_probs=37.8
Q ss_pred EEEEccCCCCHHH----------------HHHHHHHhCCCCCCCCCcceeEEEeccccCCCCCh-------------HHH
Q 004198 583 VKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------LET 633 (769)
Q Consensus 583 i~viGDiHG~~~~----------------l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s-------------~e~ 633 (769)
|+-..||||++.. +..++++...... ..-+|-.||.+..-+.+ .-+
T Consensus 5 Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~ 79 (626)
T TIGR01390 5 IVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVK-----NSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPV 79 (626)
T ss_pred EEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCC-----CeEEEECCCcCCCccchhhhhhccccCCCcChH
Confidence 6778999999743 3334444321111 11345599999855433 124
Q ss_pred HHHHHHhhhcCCCceEEecCCcch
Q 004198 634 ITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 634 l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
+.++-.|. --....||||.
T Consensus 80 ~~~mN~lg-----yDa~tlGNHEF 98 (626)
T TIGR01390 80 YKAMNLLK-----YDVGNLGNHEF 98 (626)
T ss_pred HHHHhhcC-----ccEEecccccc
Confidence 45555443 44678899994
No 237
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=40.28 E-value=31 Score=37.24 Aligned_cols=72 Identities=26% Similarity=0.451 Sum_probs=43.2
Q ss_pred CEEEEccCCCCHHHHHHHH---HHhCCCCCCCCCcceeEEEeccccC-CCCChHHHHHHH------------HHhhhcCC
Q 004198 582 PVKVFGDLHGQFGDLMRLF---DEYGFPSTAGDITYIDYLFLGDYVD-RGQHSLETITLL------------LALKIEYP 645 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l---~~~~~~~~~~~~~~~~~vfLGD~vD-rG~~s~e~l~ll------------~~lk~~~p 645 (769)
.|.|-|=-||+++.+-+-+ ++.|-.+-+ -++++||+=. |-..-+.++..- ..=.++.|
T Consensus 2 rIaVqGCcHG~Ld~iYkti~~~ek~~~tkVD------LLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~AP 75 (456)
T KOG2863|consen 2 RIAVQGCCHGELDNIYKTISLIEKRGNTKVD------LLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAP 75 (456)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCCCCcc------EEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCc
Confidence 4778899999998887544 443322333 5788999864 332222222111 11123356
Q ss_pred CceEEecCCcchhh
Q 004198 646 ENVHLIRGNHEAAD 659 (769)
Q Consensus 646 ~~v~llrGNHE~~~ 659 (769)
=--++|=||||.+.
T Consensus 76 VlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 76 VLTIFIGGNHEASN 89 (456)
T ss_pred eeEEEecCchHHHH
Confidence 66788999999875
No 238
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=39.32 E-value=40 Score=43.39 Aligned_cols=64 Identities=27% Similarity=0.273 Sum_probs=36.9
Q ss_pred EEEEccCCCCHHH----------------HHHHHHHhCCCCCCCCCcceeEEE-eccccCCCCC--------------hH
Q 004198 583 VKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLF-LGDYVDRGQH--------------SL 631 (769)
Q Consensus 583 i~viGDiHG~~~~----------------l~~~l~~~~~~~~~~~~~~~~~vf-LGD~vDrG~~--------------s~ 631 (769)
|+...|+||++.. +..+++........ .+++ -||++...+. ..
T Consensus 44 il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n------~llld~GD~~qGs~l~~~~~~~~~~~~~~~~ 117 (1163)
T PRK09419 44 ILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPN------TLLVDNGDLIQGNPLGEYAVKDNILFKNKTH 117 (1163)
T ss_pred EEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCC------eEEEeCCCccCCChhhhHHhhhccccCCCcC
Confidence 8889999998643 33344443211111 3444 8999986552 12
Q ss_pred HHHHHHHHhhhcCCCceEEecCCcch
Q 004198 632 ETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 632 e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
.++..+-.+ +--.+..||||.
T Consensus 118 ~~i~~mN~l-----gyDa~~lGNHEF 138 (1163)
T PRK09419 118 PMIKAMNAL-----GYDAGTLGNHEF 138 (1163)
T ss_pred HHHHHHhhc-----CccEEeeccccc
Confidence 344444444 344667999995
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=39.26 E-value=6e+02 Score=28.56 Aligned_cols=192 Identities=11% Similarity=0.099 Sum_probs=92.9
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCcc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~ 154 (769)
..+|.+|+.+++-+.+.... ..-.......-+.+|++..... ...++|++|+.+ .+..++.. .+. .
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~---~~~~~~~~SPDG~~La~~~~~~----g~~~I~~~d~~t--g~~~~lt~---~~~--~ 288 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP---RHNGAPAFSPDGSKLAFALSKT----GSLNLYVMDLAS--GQIRQVTD---GRS--N 288 (429)
T ss_pred cEEEEEECCCCCeEEccCCC---CCcCCeEECCCCCEEEEEEcCC----CCcEEEEEECCC--CCEEEccC---CCC--C
Confidence 47899999888877765431 1111111111234566543321 124599999988 44556531 111 1
Q ss_pred ccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccc
Q 004198 155 GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLAD 234 (769)
Q Consensus 155 ~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d 234 (769)
........++..+++...... ..++|.+|+.+. .-..+...+ . .........+|..+++.+.... ..+
T Consensus 289 ~~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g--~~~~lt~~~----~-~~~~~~~SpDG~~Ia~~~~~~g---~~~ 356 (429)
T PRK03629 289 NTEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGG--APQRITWEG----S-QNQDADVSSDGKFMVMVSSNGG---QQH 356 (429)
T ss_pred cCceEECCCCCEEEEEeCCCC--CceEEEEECCCC--CeEEeecCC----C-CccCEEECCCCCEEEEEEccCC---Cce
Confidence 112222233343444333221 247899998876 445553321 1 1122334467766555443222 246
Q ss_pred eEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEecc
Q 004198 235 AYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 304 (769)
Q Consensus 235 ~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~ 304 (769)
++.++..+. .+..+.... ........-+++.+++.+..+. ...+++.+.+...=+.+.
T Consensus 357 I~~~dl~~g---~~~~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~------~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 357 IAKQDLATG---GVQVLTDTF---LDETPSIAPNGTMVIYSSSQGM------GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred EEEEECCCC---CeEEeCCCC---CCCCceECCCCCEEEEEEcCCC------ceEEEEEECCCCCeEECc
Confidence 788887654 333333211 1111222246777777664322 134677777655444443
No 240
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=35.70 E-value=42 Score=37.28 Aligned_cols=41 Identities=10% Similarity=0.099 Sum_probs=25.5
Q ss_pred EEEeccccCCCCChH------HHHHHHHHhhh-cCCCceEEecCCcch
Q 004198 617 YLFLGDYVDRGQHSL------ETITLLLALKI-EYPENVHLIRGNHEA 657 (769)
Q Consensus 617 ~vfLGD~vDrG~~s~------e~l~ll~~lk~-~~p~~v~llrGNHE~ 657 (769)
+|-+||-++.|..++ +..+-++.-+. .-.-.++++.||||.
T Consensus 61 Vls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLGNHDy 108 (394)
T PTZ00422 61 LVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLGQADW 108 (394)
T ss_pred EEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCCcccc
Confidence 455999998887653 33444432211 011378999999996
No 241
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=34.48 E-value=1e+02 Score=32.23 Aligned_cols=87 Identities=20% Similarity=0.245 Sum_probs=59.5
Q ss_pred CcccccceeecCCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEec
Q 004198 12 SYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIR 91 (769)
Q Consensus 12 ~y~~~~~~w~~~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~ 91 (769)
.||+.+++.....++|..-+|-.++.+ +++||..-=. .+..++||..+- +++.
T Consensus 72 ~~d~~tg~~~~~~~l~~~~FgEGit~~------~d~l~qLTWk-------------------~~~~f~yd~~tl--~~~~ 124 (264)
T PF05096_consen 72 KVDLETGKVLQSVPLPPRYFGEGITIL------GDKLYQLTWK-------------------EGTGFVYDPNTL--KKIG 124 (264)
T ss_dssp EEETTTSSEEEEEE-TTT--EEEEEEE------TTEEEEEESS-------------------SSEEEEEETTTT--EEEE
T ss_pred EEECCCCcEEEEEECCccccceeEEEE------CCEEEEEEec-------------------CCeEEEEccccc--eEEE
Confidence 456777777777778888999999999 8999987432 367899999864 4333
Q ss_pred CCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccC
Q 004198 92 PAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTN 135 (769)
Q Consensus 92 ~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t 135 (769)
.. +.+.-+.++|..++.+|+--| ++.++.+|+.+
T Consensus 125 ~~---~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~ 158 (264)
T PF05096_consen 125 TF---PYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPET 158 (264)
T ss_dssp EE---E-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT
T ss_pred EE---ecCCcceEEEcCCCEEEEECC-------ccceEEECCcc
Confidence 22 344688999988889999777 36799999987
No 242
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=34.31 E-value=2.9e+02 Score=28.48 Aligned_cols=136 Identities=16% Similarity=0.221 Sum_probs=70.5
Q ss_pred cEEEEECCCC-cEEEecCCCCCCcccccceEEE-E-CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCC
Q 004198 76 SVHLYDVLTR-KWTRIRPAGEPPSPRAAHAAAA-V-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (769)
Q Consensus 76 dv~~yD~~~~-~W~~l~~~g~~P~~R~~hs~~~-~-~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~ 152 (769)
.+..|....+ +|+...... +.....+.+.+ . ++.|+++--.. ... .++..--.....+|..... ...|.+
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---~~~~~~S~D~G~TWs~~~~-~~~~~~ 207 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND---DIYISRSTDGGRTWSPPQP-TNLPNP 207 (275)
T ss_dssp EEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST---EEEEEEESSTTSS-EEEEE-EECSSC
T ss_pred eEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC---cEEEEEECCCCCcCCCcee-cccCcc
Confidence 3444555544 598776542 22233343333 3 45788776542 111 4444444444467988642 245666
Q ss_pred ccccEEEEECCcEEEEEecCCCCCccCceeE-EeCCCCCceEEEcCCCCCCC-CcccccEEEEecCCEEEE
Q 004198 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWA-LDTAQKPYVWQRLNPEGDRP-SARMYATASARSDGMFLL 221 (769)
Q Consensus 153 R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~-~d~~~~~~~W~~v~~~~~~P-~~r~~hsa~~~~~g~l~v 221 (769)
..+..++...++.++++......+ ..+.+ +... ...+|.........+ ..-.|.+++...||.|+|
T Consensus 208 ~~~~~~~~~~~g~~~~~~~~~~~r--~~l~l~~S~D-~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 208 NSSISLVRLSDGRLLLVYNNPDGR--SNLSLYVSED-GGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEECTTSEEEEEEECSSTS--EEEEEEEECT-TCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cCCceEEEcCCCCEEEEEECCCCC--CceEEEEEeC-CCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 666666666666777766632222 12222 2222 233898764432222 224566667777888886
No 243
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=33.70 E-value=5.5e+02 Score=26.42 Aligned_cols=210 Identities=16% Similarity=0.218 Sum_probs=92.6
Q ss_pred CcEEEecCCCCCC--cccccceEEEE--CCEEEEEC--ccCCCCCCcCcE-EEEEccCCcceEEEeeec--C---CCCCC
Q 004198 85 RKWTRIRPAGEPP--SPRAAHAAAAV--GTMVVFQG--GIGPAGHSTDDL-YVLDLTNDKFKWHRVVVQ--G---QGPGP 152 (769)
Q Consensus 85 ~~W~~l~~~g~~P--~~R~~hs~~~~--~~~Iyv~G--G~~~~~~~~~dl-~~~d~~t~~~~W~~~~~~--g---~~p~~ 152 (769)
.+|......-..+ ..+....+... ++.|+++- +..........+ +..... +..+|...... + ..+.+
T Consensus 30 ~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D-~G~TWs~~~~l~~~~~~~~~~~ 108 (275)
T PF13088_consen 30 KTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTD-GGKTWSEPTDLPPGWFGNFSGP 108 (275)
T ss_dssp TEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESS-TTSS-EEEEEEHHHCCCSCEEC
T ss_pred CeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECC-CCCCCCCccccccccccceecc
Confidence 5699765432223 22333333333 66777775 222221111222 233333 23568877421 1 11122
Q ss_pred ccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEE-EecCCEEEEEcccCCCCCc
Q 004198 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATAS-ARSDGMFLLCGGRDASGAP 231 (769)
Q Consensus 153 R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~-~~~~g~l~v~GG~~~~~~~ 231 (769)
-.+..+ ...++.+++..-............+..... -+|+...... +.....+.+. ...+|.++++--.. ...
T Consensus 109 ~~~~~i-~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G-~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~- 182 (275)
T PF13088_consen 109 GRGPPI-QLPDGRLIAPYYHESGGSFSAFVYYSDDGG-KTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND- 182 (275)
T ss_dssp SEEEEE-EECTTEEEEEEEEESSCEEEEEEEEESSTT-SSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST-
T ss_pred ceeeee-EecCCCEEEEEeeccccCcceEEEEeCCCC-ceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC-
Confidence 222223 444556666521111112233333444433 3798876542 1223334443 34788888876442 111
Q ss_pred ccceEEEe-cCCCCceEEEeCCCCCCCcccceEEEEe-CCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCCcc
Q 004198 232 LADAYGLL-MHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVT 308 (769)
Q Consensus 232 l~d~~~ld-~~~~~~W~W~~~~~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 308 (769)
.++... .+...+|+-...... |.+.....++.. ++.++++...... . ....+++-.-...+|.....+..
T Consensus 183 --~~~~~~S~D~G~TWs~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~-r---~~l~l~~S~D~g~tW~~~~~i~~ 254 (275)
T PF13088_consen 183 --DIYISRSTDGGRTWSPPQPTNL-PNPNSSISLVRLSDGRLLLVYNNPDG-R---SNLSLYVSEDGGKTWSRPKTIDD 254 (275)
T ss_dssp --EEEEEEESSTTSS-EEEEEEEC-SSCCEEEEEEECTTSEEEEEEECSST-S---EEEEEEEECTTCEEEEEEEEEEE
T ss_pred --cEEEEEECCCCCcCCCceeccc-CcccCCceEEEcCCCCEEEEEECCCC-C---CceEEEEEeCCCCcCCccEEEeC
Confidence 333333 333345664332222 344444444443 5688877762111 1 12234343344789998766644
No 244
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=33.24 E-value=84 Score=36.85 Aligned_cols=37 Identities=24% Similarity=0.089 Sum_probs=23.7
Q ss_pred eEEEeccccCCCCCh-----HHHHHHHHHhhhcCCCceEEecCCcch
Q 004198 616 DYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s-----~e~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
-+|.-||.+...+.+ ...+.++-++. --.+..||||.
T Consensus 52 l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~g-----~Da~~lGNHEF 93 (550)
T TIGR01530 52 LVLHAGDAIIGTLYFTLFGGRADAALMNAAG-----FDFFTLGNHEF 93 (550)
T ss_pred EEEECCCCCCCccchhhcCCHHHHHHHhccC-----CCEEEeccccc
Confidence 456699998755432 33455554543 45788999995
No 245
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=32.73 E-value=6.8e+02 Score=27.24 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=29.6
Q ss_pred EEEECccCCCC----CCcCcEEEEEccC-CcceEEEeeecCCCCCCccccEEEEE--CCcEEEEEecCCCCCccCceeEE
Q 004198 112 VVFQGGIGPAG----HSTDDLYVLDLTN-DKFKWHRVVVQGQGPGPRYGHVMDLV--SQRYLVSVSGNDGKRVLSDAWAL 184 (769)
Q Consensus 112 Iyv~GG~~~~~----~~~~dl~~~d~~t-~~~~W~~~~~~g~~p~~R~~hs~~~~--~~~~l~v~GG~~~~~~~~dv~~~ 184 (769)
+++.+|.+... .....+|++|+.+ .... .++.+..... ....-+.+-. ++..-+++.|.. ...+|++
T Consensus 163 ~i~g~Gy~~~~~~~~~~~~~lyi~d~~t~G~l~-~~i~~~~~~~-gl~~~~~~D~d~DG~~D~vYaGDl----~GnlwR~ 236 (335)
T PF05567_consen 163 VIFGSGYNSDDVDSSSGGAALYILDADTTGALI-KKIDVPGGSG-GLSSPAVVDSDGDGYVDRVYAGDL----GGNLWRF 236 (335)
T ss_dssp EEEE--BS-TT-------EEEEEEETTT---EE-EEEEE--STT--EEEEEEE-TTSSSEE-EEEEEET----TSEEEEE
T ss_pred EEEccCCCCCcccccCCCcEEEEEECCCCCceE-EEEecCCCCc-cccccEEEeccCCCeEEEEEEEcC----CCcEEEE
Confidence 44445654322 1245799999998 5433 3443322111 2211111111 111334444532 3579999
Q ss_pred eCCCC-CceEE
Q 004198 185 DTAQK-PYVWQ 194 (769)
Q Consensus 185 d~~~~-~~~W~ 194 (769)
|+... +..|.
T Consensus 237 dl~~~~~~~~~ 247 (335)
T PF05567_consen 237 DLSSANPSSWS 247 (335)
T ss_dssp E--TTSTT-GG
T ss_pred ECCCCCcccce
Confidence 99753 33453
No 246
>PRK01742 tolB translocation protein TolB; Provisional
Probab=32.22 E-value=7.6e+02 Score=27.66 Aligned_cols=141 Identities=18% Similarity=0.164 Sum_probs=66.0
Q ss_pred CcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCc-EEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCC
Q 004198 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (769)
Q Consensus 126 ~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~ 204 (769)
..+|++|+.+. +-..+. ..+.. ........++ .|++....++. .++|.+|+.++ ....+...
T Consensus 228 ~~i~i~dl~tg--~~~~l~---~~~g~--~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~--~~~~lt~~----- 290 (429)
T PRK01742 228 SQLVVHDLRSG--ARKVVA---SFRGH--NGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGG--TPSQLTSG----- 290 (429)
T ss_pred cEEEEEeCCCC--ceEEEe---cCCCc--cCceeECCCCCEEEEEEecCCc---EEEEEEECCCC--CeEeeccC-----
Confidence 46899999873 333442 12211 1122233333 44443333332 36899998776 55555432
Q ss_pred cccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcc
Q 004198 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (769)
Q Consensus 205 ~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~ 284 (769)
...........+|..++|..... + ..++|.++..... -+. ... .. + .....-+++.+++.+.
T Consensus 291 ~~~~~~~~wSpDG~~i~f~s~~~-g--~~~I~~~~~~~~~-~~~--l~~---~~-~-~~~~SpDG~~ia~~~~------- 352 (429)
T PRK01742 291 AGNNTEPSWSPDGQSILFTSDRS-G--SPQVYRMSASGGG-ASL--VGG---RG-Y-SAQISADGKTLVMING------- 352 (429)
T ss_pred CCCcCCEEECCCCCEEEEEECCC-C--CceEEEEECCCCC-eEE--ecC---CC-C-CccCCCCCCEEEEEcC-------
Confidence 11122333446775444433211 1 2467777765331 111 111 11 1 1111224444444332
Q ss_pred cCCCcEEEEECCCCcEEecc
Q 004198 285 EGEAAVAVLDTAAGVWLDRN 304 (769)
Q Consensus 285 ~~~~~v~~yd~~t~~W~~~~ 304 (769)
+.++.+|..++.++.+.
T Consensus 353 ---~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 353 ---DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred ---CCEEEEECCCCCeEEec
Confidence 24788999999887654
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=31.73 E-value=4.1e+02 Score=30.84 Aligned_cols=99 Identities=10% Similarity=0.055 Sum_probs=53.2
Q ss_pred CCcEEEEECCCCcEEEecCCCCCCcccccceEEEEC--CEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCC---
Q 004198 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVG--TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ--- 148 (769)
Q Consensus 74 ~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~--~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~--- 148 (769)
..+||+||++.+.|-.--... . ..--++.++ +.++.+||.. ..+..+|+.+.. .-..+.....
T Consensus 154 g~evYRlNLEqGrfL~P~~~~---~--~~lN~v~in~~hgLla~Gt~~------g~VEfwDpR~ks-rv~~l~~~~~v~s 221 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETD---S--GELNVVSINEEHGLLACGTED------GVVEFWDPRDKS-RVGTLDAASSVNS 221 (703)
T ss_pred CcceEEEEccccccccccccc---c--ccceeeeecCccceEEecccC------ceEEEecchhhh-hheeeecccccCC
Confidence 468999999999987321110 1 112233333 4788888852 347888887632 2233322111
Q ss_pred CCCCccc--cEEEEECC-cEEEEEecCCCCCccCceeEEeCCCC
Q 004198 149 GPGPRYG--HVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQK 189 (769)
Q Consensus 149 ~p~~R~~--hs~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~~~~ 189 (769)
.|..-.. .++..+.+ +.=+.+|-.+| .+++||+.+.
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~G-----~v~iyDLRa~ 260 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTSTG-----SVLIYDLRAS 260 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccCC-----cEEEEEcccC
Confidence 2222111 23334444 45455555444 5899999876
No 248
>PLN00181 protein SPA1-RELATED; Provisional
Probab=30.64 E-value=1.1e+03 Score=28.95 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=14.4
Q ss_pred CcEEEEEecCCCCCccCceeEEeCCCC
Q 004198 163 QRYLVSVSGNDGKRVLSDAWALDTAQK 189 (769)
Q Consensus 163 ~~~l~v~GG~~~~~~~~dv~~~d~~~~ 189 (769)
++.+++.||.++ .+.+||+.+.
T Consensus 587 ~~~~L~Sgs~Dg-----~v~iWd~~~~ 608 (793)
T PLN00181 587 DPTLLASGSDDG-----SVKLWSINQG 608 (793)
T ss_pred CCCEEEEEcCCC-----EEEEEECCCC
Confidence 446777777665 3677777654
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=30.22 E-value=4.2e+02 Score=30.75 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=37.0
Q ss_pred CCCCccccEEEEECC-cEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCC
Q 004198 149 GPGPRYGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA 227 (769)
Q Consensus 149 ~p~~R~~hs~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~ 227 (769)
+-.|++|..++...- .-||+.|. -++||+||++++ +|-..-.. -.+...+......+ -|+.+||.++
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqG--rfL~P~~~---~~~~lN~v~in~~h-gLla~Gt~~g 197 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQG--RFLNPFET---DSGELNVVSINEEH-GLLACGTEDG 197 (703)
T ss_pred eecCcCCccccccCCCccEEEeec------CcceEEEEcccc--cccccccc---ccccceeeeecCcc-ceEEecccCc
Confidence 345666666655432 24665543 368999999998 77443221 12233333333233 5778887543
No 250
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=29.41 E-value=44 Score=34.84 Aligned_cols=69 Identities=28% Similarity=0.359 Sum_probs=39.3
Q ss_pred CEEEEcc--CCCCHHHHHHHHHHhCCCCCCCCCcceeEEE-ecccc-CCCCCh---------HHHHHHHHHhhhcCCCce
Q 004198 582 PVKVFGD--LHGQFGDLMRLFDEYGFPSTAGDITYIDYLF-LGDYV-DRGQHS---------LETITLLLALKIEYPENV 648 (769)
Q Consensus 582 ~i~viGD--iHG~~~~l~~~l~~~~~~~~~~~~~~~~~vf-LGD~v-DrG~~s---------~e~l~ll~~lk~~~p~~v 648 (769)
.++|||| .+|-|..-...+.....- +.-++ ++|. +||-+ |-|..+ .|-+----.|. ...
T Consensus 45 sflvvGDwGr~g~~nqs~va~qmg~ig-e~l~i---dfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQ----kpW 116 (336)
T KOG2679|consen 45 SFLVVGDWGRRGSFNQSQVALQMGEIG-EKLDI---DFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQ----KPW 116 (336)
T ss_pred EEEEEcccccCCchhHHHHHHHHHhHH-Hhccc---eEEEecCCcccccCCCCCCChhHHhhhhhcccCcccc----cch
Confidence 4899999 688887665554432211 11112 4454 99976 456433 23222222232 367
Q ss_pred EEecCCcchh
Q 004198 649 HLIRGNHEAA 658 (769)
Q Consensus 649 ~llrGNHE~~ 658 (769)
+.|.||||.+
T Consensus 117 y~vlGNHDyr 126 (336)
T KOG2679|consen 117 YSVLGNHDYR 126 (336)
T ss_pred hhhccCcccc
Confidence 8899999964
No 251
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.40 E-value=6.5e+02 Score=26.00 Aligned_cols=175 Identities=19% Similarity=0.177 Sum_probs=94.5
Q ss_pred CcEEEEECCCCcEEEe-cCCCCCCcccccceEEEEC--CEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCC
Q 004198 75 NSVHLYDVLTRKWTRI-RPAGEPPSPRAAHAAAAVG--TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l-~~~g~~P~~R~~hs~~~~~--~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~ 151 (769)
..++.+|..+++-.+- ... -+.-.++..+ ..|++-|++ ...+-++|..+ .+.+.+. -...
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH------~aqVNtV~fNeesSVv~Sgsf------D~s~r~wDCRS--~s~ePiQ---ilde 143 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGH------LAQVNTVRFNEESSVVASGSF------DSSVRLWDCRS--RSFEPIQ---ILDE 143 (307)
T ss_pred ceEEEEEcccCeeeeecccc------cceeeEEEecCcceEEEeccc------cceeEEEEccc--CCCCccc---hhhh
Confidence 4688899998763321 110 0112233343 367777775 34588999998 5566663 4566
Q ss_pred CccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCc
Q 004198 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (769)
Q Consensus 152 ~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~ 231 (769)
.+.+-..+.+.+ ..+|.|..++. +-.||+..+ + ......+. |. -+.....++...+.|-
T Consensus 144 a~D~V~Si~v~~-heIvaGS~DGt-----vRtydiR~G--~-l~sDy~g~-pi----t~vs~s~d~nc~La~~------- 202 (307)
T KOG0316|consen 144 AKDGVSSIDVAE-HEIVAGSVDGT-----VRTYDIRKG--T-LSSDYFGH-PI----TSVSFSKDGNCSLASS------- 202 (307)
T ss_pred hcCceeEEEecc-cEEEeeccCCc-----EEEEEeecc--e-eehhhcCC-cc----eeEEecCCCCEEEEee-------
Confidence 777877767766 77777776653 677888765 1 11122221 11 1222335555555543
Q ss_pred ccceEEE-ecCCCCceEEEeCC-CCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCc
Q 004198 232 LADAYGL-LMHRNGQWEWTLAP-GVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (769)
Q Consensus 232 l~d~~~l-d~~~~~~W~W~~~~-~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~ 299 (769)
++...++ |..+. +-.+.. +- ...-|---+++....-+|++|..++ .++.||+....
T Consensus 203 l~stlrLlDk~tG---klL~sYkGh-kn~eykldc~l~qsdthV~sgSEDG--------~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 203 LDSTLRLLDKETG---KLLKSYKGH-KNMEYKLDCCLNQSDTHVFSGSEDG--------KVYFWDLVDET 260 (307)
T ss_pred ccceeeecccchh---HHHHHhccc-ccceeeeeeeecccceeEEeccCCc--------eEEEEEeccce
Confidence 3333333 33322 111111 11 1223444566667778899996543 48888886553
No 252
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=29.34 E-value=88 Score=38.39 Aligned_cols=65 Identities=22% Similarity=0.113 Sum_probs=37.9
Q ss_pred EEEEccCCCCHHH----------------HHHHHHHhCCCCCCCCCcceeEEEeccccCCCCCh--------------HH
Q 004198 583 VKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS--------------LE 632 (769)
Q Consensus 583 i~viGDiHG~~~~----------------l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s--------------~e 632 (769)
|+-..|+||++.. +..++++..-... ..-+|.-||++..-+.+ .-
T Consensus 118 IL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~-----NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P 192 (814)
T PRK11907 118 ILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENP-----NVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHP 192 (814)
T ss_pred EEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCC-----CEEEEecCCCCCCCcccchhhhccccccCcchH
Confidence 7888999999643 2233443321111 11355599999754432 12
Q ss_pred HHHHHHHhhhcCCCceEEecCCcch
Q 004198 633 TITLLLALKIEYPENVHLIRGNHEA 657 (769)
Q Consensus 633 ~l~ll~~lk~~~p~~v~llrGNHE~ 657 (769)
++.+|-.|. --.+..||||.
T Consensus 193 ~i~amN~LG-----yDA~tLGNHEF 212 (814)
T PRK11907 193 MYAALEALG-----FDAGTLGNHEF 212 (814)
T ss_pred HHHHHhccC-----CCEEEechhhc
Confidence 556665553 44778999995
No 253
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=29.22 E-value=6.7e+02 Score=26.07 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=73.6
Q ss_pred cCCcEEEEECCCCc---EEEecCCCC---CCccccc---ceEEEECCEEEEECccCCCCCCcCcEEEEEccCC--cceEE
Q 004198 73 VTNSVHLYDVLTRK---WTRIRPAGE---PPSPRAA---HAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTND--KFKWH 141 (769)
Q Consensus 73 ~~~dv~~yD~~~~~---W~~l~~~g~---~P~~R~~---hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~--~~~W~ 141 (769)
-+++|.+||+.+++ |..|+..+. .|....+ .-.++-++-|||+-...... ..=-+-++|+.+- ..+|.
T Consensus 87 ~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~-g~ivvskld~~tL~v~~tw~ 165 (250)
T PF02191_consen 87 NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN-GNIVVSKLDPETLSVEQTWN 165 (250)
T ss_pred CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC-CcEEEEeeCcccCceEEEEE
Confidence 36899999999986 445543321 1222222 23455566777776543222 1122445566541 12354
Q ss_pred EeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEe--cCCEE
Q 004198 142 RVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASAR--SDGMF 219 (769)
Q Consensus 142 ~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~--~~g~l 219 (769)
. ..+.+..+.+..+.+ .||+....+... ..-.+.||+.++ +=..+... -+.+-..++++.+ .+.+|
T Consensus 166 T-----~~~k~~~~naFmvCG--vLY~~~s~~~~~-~~I~yafDt~t~--~~~~~~i~--f~~~~~~~~~l~YNP~dk~L 233 (250)
T PF02191_consen 166 T-----SYPKRSAGNAFMVCG--VLYATDSYDTRD-TEIFYAFDTYTG--KEEDVSIP--FPNPYGNISMLSYNPRDKKL 233 (250)
T ss_pred e-----ccCchhhcceeeEee--EEEEEEECCCCC-cEEEEEEECCCC--ceeceeee--eccccCceEeeeECCCCCeE
Confidence 2 356777777665555 688877655443 344577999887 32222211 1222234455443 45688
Q ss_pred EEE
Q 004198 220 LLC 222 (769)
Q Consensus 220 ~v~ 222 (769)
|+.
T Consensus 234 Y~w 236 (250)
T PF02191_consen 234 YAW 236 (250)
T ss_pred EEE
Confidence 875
No 254
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=29.22 E-value=2.5e+02 Score=27.77 Aligned_cols=89 Identities=22% Similarity=0.252 Sum_probs=59.6
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCcchhhhhhccCCHH---HHHHHhCCC---------Cchhh
Q 004198 615 IDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRL---ECIERMGEN---------DGIWA 682 (769)
Q Consensus 615 ~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g~~~---e~~~~~~~~---------~~~~~ 682 (769)
..+|||| -|-+.-|.+.||.+|+.+|-.+.++ -|+-|.+..++...|.. +|..++.+- .-...
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 3688888 5889999999999999998766555 89999888776554431 121111110 11234
Q ss_pred hHHHhHhhccccceEEEeceEEEEcC
Q 004198 683 WTRFNQLFNCLPLAALIEKKIICMHG 708 (769)
Q Consensus 683 ~~~~~~~f~~lP~~~~i~~~i~~vHg 708 (769)
|..+..+.-++++...+.-+++.+-|
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NG 140 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNG 140 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECC
Confidence 56666777777877777656666666
No 255
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=28.87 E-value=2.8e+02 Score=27.43 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=38.1
Q ss_pred CCcEEEEECCCCcEEEecCCCC--CCcccccceEEEEC-CEEEEECccCCCCCCcCcEEEEEccCCcceEEEe
Q 004198 74 TNSVHLYDVLTRKWTRIRPAGE--PPSPRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRV 143 (769)
Q Consensus 74 ~~dv~~yD~~~~~W~~l~~~g~--~P~~R~~hs~~~~~-~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~ 143 (769)
.+++|.+|..++.|..|..... --.|+ ...-.-+ +.++++|-.-+.-.---.||+|++.++ +=+.+
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg--~~~~l 155 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTG--NLTEL 155 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCC--ceeEe
Confidence 6899999999999887743321 22344 2222223 356666632111112356999999994 34444
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=28.31 E-value=8.3e+02 Score=26.85 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred cccCCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECc---cCCCCCCcCcEEEEEccCCcceEEEeeecC
Q 004198 71 AGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGG---IGPAGHSTDDLYVLDLTNDKFKWHRVVVQG 147 (769)
Q Consensus 71 ~~~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG---~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g 147 (769)
+.+.+.++++|..+.+-...-+.|..|..+ +..-+..+|+.-. +...+...+.+.+||+.+ .+-..-...+
T Consensus 23 ~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~----~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p 96 (352)
T TIGR02658 23 FAATTQVYTIDGEAGRVLGMTDGGFLPNPV----VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELP 96 (352)
T ss_pred cccCceEEEEECCCCEEEEEEEccCCCcee----ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccC
Q ss_pred CCCC---CccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEc
Q 004198 148 QGPG---PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCG 223 (769)
Q Consensus 148 ~~p~---~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~G 223 (769)
+-|. .-+-+...+..+++.+.+.-.+.. +.|-++|++++ +.+... |.+.+.+......++.+.+++
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~---~~V~VvD~~~~----kvv~ei---~vp~~~~vy~t~e~~~~~~~~ 165 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS---PAVGVVDLEGK----AFVRMM---DVPDCYHIFPTANDTFFMHCR 165 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCC---CEEEEEECCCC----cEEEEE---eCCCCcEEEEecCCccEEEee
No 257
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=28.17 E-value=7.9e+02 Score=29.07 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcE------EEecCCCCCC-ccccc-ceEEEEC-CEEEEE
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKW------TRIRPAGEPP-SPRAA-HAAAAVG-TMVVFQ 115 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W------~~l~~~g~~P-~~R~~-hs~~~~~-~~Iyv~ 115 (769)
++-+++-||.+ ..++.+|+.+..= ..++.. +.+ .++.. ++.+.-+ +.+++-
T Consensus 129 ~~~lvaSgGLD-------------------~~IflWDin~~~~~l~~s~n~~t~~-sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 129 NNELVASGGLD-------------------RKIFLWDINTGTATLVASFNNVTVN-SLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred CceeEEecCCC-------------------ccEEEEEccCcchhhhhhccccccc-cCCCCCccceeeeecCCcceEEEe
Confidence 66788888854 4677778775522 222211 111 22222 3333333 268888
Q ss_pred CccCCCCCCcCcEEEEEccCC
Q 004198 116 GGIGPAGHSTDDLYVLDLTND 136 (769)
Q Consensus 116 GG~~~~~~~~~dl~~~d~~t~ 136 (769)
||+ .+++-.||+.+.
T Consensus 189 Ggt------ek~lr~wDprt~ 203 (735)
T KOG0308|consen 189 GGT------EKDLRLWDPRTC 203 (735)
T ss_pred cCc------ccceEEeccccc
Confidence 886 467999999985
No 258
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=28.13 E-value=5e+02 Score=27.73 Aligned_cols=121 Identities=16% Similarity=0.220 Sum_probs=64.5
Q ss_pred CcEEEEECCCC-----cEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCC
Q 004198 75 NSVHLYDVLTR-----KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQG 149 (769)
Q Consensus 75 ~dv~~yD~~~~-----~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~ 149 (769)
+.++.|+.... +++.+... ..+-.-++++.+++++++.-| +.+++|++..+. ++.+.. ..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~---~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~-~l~~~~---~~ 126 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST---EVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSK-TLLKKA---FY 126 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE---EESS-EEEEEEETTEEEEEET--------TEEEEEEEETTS-SEEEEE---EE
T ss_pred cEEEEEEEEcccccceEEEEEEEE---eecCcceEhhhhCCEEEEeec--------CEEEEEEccCcc-cchhhh---ee
Confidence 78999999985 66666432 122224677777888666555 458899988743 366663 33
Q ss_pred CCCccccEEEEECCcEEEEEecCCCCCccCcee--EEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEE
Q 004198 150 PGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAW--ALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLC 222 (769)
Q Consensus 150 p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~--~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~ 222 (769)
..+-+..++.+.++ .+++ |- ....+. .|+.+.. +-..+... +.++..-++....++..++.
T Consensus 127 ~~~~~i~sl~~~~~-~I~v-gD-----~~~sv~~~~~~~~~~--~l~~va~d---~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 127 DSPFYITSLSVFKN-YILV-GD-----AMKSVSLLRYDEENN--KLILVARD---YQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp -BSSSEEEEEEETT-EEEE-EE-----SSSSEEEEEEETTTE---EEEEEEE---SS-BEEEEEEEE-SSSEEEE
T ss_pred cceEEEEEEecccc-EEEE-EE-----cccCEEEEEEEccCC--EEEEEEec---CCCccEEEEEEecCCcEEEE
Confidence 34445666666666 5554 42 223344 4566443 34444432 23444334444424433333
No 259
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=27.15 E-value=70 Score=33.64 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=26.4
Q ss_pred eEEEeccccCCCCChHHHH-HHHHHhhhcCCCceEEecCCcchh
Q 004198 616 DYLFLGDYVDRGQHSLETI-TLLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 616 ~~vfLGD~vDrG~~s~e~l-~ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
+++|+||+|.+ -..+.| ..|-.||.+++-.+.+ .|-|..
T Consensus 2 ~ilfiGDi~G~--~Gr~~l~~~L~~lk~~~~~D~vI--aNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVYGK--AGRKIVKNNLPQLKSKYQADLVI--ANGENT 41 (266)
T ss_pred eEEEEEecCCH--HHHHHHHHHHHHHHHhCCCCEEE--EcCccc
Confidence 78999999944 444444 6678888887655444 455654
No 260
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=27.11 E-value=8.5e+02 Score=28.83 Aligned_cols=121 Identities=18% Similarity=0.311 Sum_probs=67.1
Q ss_pred CCEEEEECccCCCCCCcCcEEEEEccCCc----ceEEEeeecCCCC-CCcccc-EEEEECCcEEEEEecCCCCCccCcee
Q 004198 109 GTMVVFQGGIGPAGHSTDDLYVLDLTNDK----FKWHRVVVQGQGP-GPRYGH-VMDLVSQRYLVSVSGNDGKRVLSDAW 182 (769)
Q Consensus 109 ~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~----~~W~~~~~~g~~p-~~R~~h-s~~~~~~~~l~v~GG~~~~~~~~dv~ 182 (769)
++.+++-||.+ ..++++|+.+.. .+...+.+ ...+ +++.+- +++.-..+.+++-||. ..++.
T Consensus 129 ~~~lvaSgGLD------~~IflWDin~~~~~l~~s~n~~t~-~sl~sG~k~siYSLA~N~t~t~ivsGgt-----ek~lr 196 (735)
T KOG0308|consen 129 NNELVASGGLD------RKIFLWDINTGTATLVASFNNVTV-NSLGSGPKDSIYSLAMNQTGTIIVSGGT-----EKDLR 196 (735)
T ss_pred CceeEEecCCC------ccEEEEEccCcchhhhhhcccccc-ccCCCCCccceeeeecCCcceEEEecCc-----ccceE
Confidence 56888989963 447778777532 12223322 2222 333332 4433444468887874 45788
Q ss_pred EEeCCCCCceEEEcCCCCCCCCcccccEE-----EEecCCEEEEEcccCCCC-----CcccceEEEecCCCCceEEEeCC
Q 004198 183 ALDTAQKPYVWQRLNPEGDRPSARMYATA-----SARSDGMFLLCGGRDASG-----APLADAYGLLMHRNGQWEWTLAP 252 (769)
Q Consensus 183 ~~d~~~~~~~W~~v~~~~~~P~~r~~hsa-----~~~~~g~l~v~GG~~~~~-----~~l~d~~~ld~~~~~~W~W~~~~ 252 (769)
.||+.+. .++-.. | +|+- .+..+|.-++.++.++.- ....++..|-.++++.|.|..-+
T Consensus 197 ~wDprt~----~kimkL------r-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 197 LWDPRTC----KKIMKL------R-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred Eeccccc----cceeee------e-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 8999886 222111 1 3332 233566666666654421 11345666778888888887663
No 261
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=27.07 E-value=7.3e+02 Score=25.79 Aligned_cols=158 Identities=12% Similarity=0.065 Sum_probs=77.3
Q ss_pred CcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcce-EEEeeecCC---CCCCcccc---EEEEECCcEEEEE
Q 004198 97 PSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFK-WHRVVVQGQ---GPGPRYGH---VMDLVSQRYLVSV 169 (769)
Q Consensus 97 P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~-W~~~~~~g~---~p~~R~~h---s~~~~~~~~l~v~ 169 (769)
|.+-.+-+.++.++.+|..=. .++++.+||+.+.... |..++-.+- .|....++ -+++-+++..+|+
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 445566677778887777544 3578999999996544 555542111 12222222 3333345444454
Q ss_pred ecCCCCCccCceeEEeCCCCC--ceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcccceEEEecCCCCceE
Q 004198 170 SGNDGKRVLSDAWALDTAQKP--YVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWE 247 (769)
Q Consensus 170 GG~~~~~~~~dv~~~d~~~~~--~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l~d~~~ld~~~~~~W~ 247 (769)
.-..... .-.|-.+|+.+-. -.|..-- +.+.... +.+.-|.||+....+... ..=.+.||..+. +
T Consensus 140 at~~~~g-~ivvskld~~tL~v~~tw~T~~-----~k~~~~n--aFmvCGvLY~~~s~~~~~--~~I~yafDt~t~---~ 206 (250)
T PF02191_consen 140 ATEDNNG-NIVVSKLDPETLSVEQTWNTSY-----PKRSAGN--AFMVCGVLYATDSYDTRD--TEIFYAFDTYTG---K 206 (250)
T ss_pred ecCCCCC-cEEEEeeCcccCceEEEEEecc-----Cchhhcc--eeeEeeEEEEEEECCCCC--cEEEEEEECCCC---c
Confidence 4433221 1123334544321 1565421 2222222 223356888876654432 233467787755 2
Q ss_pred EEeCCCCCCCccc-ceEEEEe---CCEEEEE
Q 004198 248 WTLAPGVAPSPRY-QHAAVFV---GARLHVT 274 (769)
Q Consensus 248 W~~~~~~~P~~R~-~hs~~~~---~~~i~V~ 274 (769)
-..+ ..+-..++ .+++.-. +.+||+.
T Consensus 207 ~~~~-~i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 207 EEDV-SIPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred eece-eeeeccccCceEeeeECCCCCeEEEE
Confidence 2222 22222233 3344444 6788887
No 262
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=26.10 E-value=2.3e+02 Score=27.32 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=40.2
Q ss_pred EEEccCCCCHHHHHHHHH-HhCC----CCCC--CCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEE
Q 004198 584 KVFGDLHGQFGDLMRLFD-EYGF----PSTA--GDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHL 650 (769)
Q Consensus 584 ~viGDiHG~~~~l~~~l~-~~~~----~~~~--~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~l 650 (769)
+++.=.+||-..+.+.+. .++. +..+ .....-++||||=.||+|...-++..+|..|+ +.+|++
T Consensus 2 IvYsS~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~---~KkV~l 72 (160)
T PF12641_consen 2 IVYSSRTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDKDMKEFLKKLK---GKKVAL 72 (160)
T ss_pred EEEECCCChHHHHHHHHHHHCCCceeEeccccccCCCCCCEEEEEcCccCCCCCHHHHHHHHHcc---CCeEEE
Confidence 455556777666654433 2322 0000 00122389999999999999999999998876 335544
No 263
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=25.38 E-value=1e+03 Score=27.05 Aligned_cols=192 Identities=8% Similarity=0.049 Sum_probs=92.3
Q ss_pred cCCcEEEEECCCCcEEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCC
Q 004198 73 VTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (769)
Q Consensus 73 ~~~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~ 152 (769)
-+.|+|.++.+.++-++++-.|.+....+++ .-++.|+|.--.-..-..-..+|..+... .+.++++. .
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfGr~fT~VaG~---~~dg~iiV~TD~~tPF~q~~~lYkv~~dg--~~~e~Lnl------G 173 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFGRRFTRVAGW---IPDGEIIVSTDFHTPFSQWTELYKVNVDG--IKTEPLNL------G 173 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEeccccceeecc---CCCCCEEEEeccCCCcccceeeeEEccCC--ceeeeccC------C
Confidence 3689999999999999999876332222221 22455555443211111234455555544 33555531 1
Q ss_pred ccccEEEEECCcEEEEEecCCC---------CCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEc
Q 004198 153 RYGHVMDLVSQRYLVSVSGNDG---------KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCG 223 (769)
Q Consensus 153 R~~hs~~~~~~~~l~v~GG~~~---------~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~G 223 (769)
- .+..+++++.+|+ |-+.. .+.-..+|+=.-... .++++-.+ +.. -++-++..+++|...
T Consensus 174 p--athiv~~dg~ivi-gRntydLP~WK~YkGGtrGklWis~d~g~--tFeK~vdl---~~~---vS~PmIV~~RvYFls 242 (668)
T COG4946 174 P--ATHIVIKDGIIVI-GRNTYDLPHWKGYKGGTRGKLWISSDGGK--TFEKFVDL---DGN---VSSPMIVGERVYFLS 242 (668)
T ss_pred c--eeeEEEeCCEEEE-ccCcccCcccccccCCccceEEEEecCCc--ceeeeeec---CCC---cCCceEEcceEEEEe
Confidence 1 1233456654444 43321 112345555433333 44554333 111 112234566777765
Q ss_pred ccCCCCCcccceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEec
Q 004198 224 GRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDR 303 (769)
Q Consensus 224 G~~~~~~~l~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~ 303 (769)
-..+. .++|.-|..-. .-.+-.. ..-|...-+--+++-+||-- ..++|.|||++..-+++
T Consensus 243 D~eG~----GnlYSvdldGk---DlrrHTn---FtdYY~R~~nsDGkrIvFq~----------~GdIylydP~td~lekl 302 (668)
T COG4946 243 DHEGV----GNLYSVDLDGK---DLRRHTN---FTDYYPRNANSDGKRIVFQN----------AGDIYLYDPETDSLEKL 302 (668)
T ss_pred cccCc----cceEEeccCCc---hhhhcCC---chhccccccCCCCcEEEEec----------CCcEEEeCCCcCcceee
Confidence 54433 34444444322 1111110 11122222233566556521 24699999999988887
Q ss_pred cCC
Q 004198 304 NGL 306 (769)
Q Consensus 304 ~~~ 306 (769)
.--
T Consensus 303 dI~ 305 (668)
T COG4946 303 DIG 305 (668)
T ss_pred ecC
Confidence 654
No 264
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=24.86 E-value=95 Score=36.40 Aligned_cols=69 Identities=22% Similarity=0.120 Sum_probs=34.4
Q ss_pred EEEEccCCCCHHH----------HHHHHHHhCCCCCCCCCcceeEEEeccccCCCCCh-----HHHHHHHHHhhhcCCCc
Q 004198 583 VKVFGDLHGQFGD----------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPEN 647 (769)
Q Consensus 583 i~viGDiHG~~~~----------l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s-----~e~l~ll~~lk~~~p~~ 647 (769)
|+-+.|+||++.. +..+++........ ..+..-+|.-||++.--+.+ .-++.++-.+. -.
T Consensus 37 il~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~-~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g----~D 111 (551)
T PRK09558 37 ILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAA-EGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIG----YD 111 (551)
T ss_pred EEEecccCCCccccccCCccHHHHHHHHHHHHHHhhc-cCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCC----CC
Confidence 7888999998742 22334333210000 00112455589998643321 22344444442 23
Q ss_pred eEEecCCcch
Q 004198 648 VHLIRGNHEA 657 (769)
Q Consensus 648 v~llrGNHE~ 657 (769)
+. ..||||.
T Consensus 112 a~-tlGNHEF 120 (551)
T PRK09558 112 AM-AVGNHEF 120 (551)
T ss_pred EE-ccccccc
Confidence 44 4599995
No 265
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=24.66 E-value=2.1e+02 Score=29.97 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=28.2
Q ss_pred eEEEeccccCCCCC------------------hHHHHHHHHHhhhcCC--CceEEecCCcchhhhhhc
Q 004198 616 DYLFLGDYVDRGQH------------------SLETITLLLALKIEYP--ENVHLIRGNHEAADINAL 663 (769)
Q Consensus 616 ~~vfLGD~vDrG~~------------------s~e~l~ll~~lk~~~p--~~v~llrGNHE~~~~~~~ 663 (769)
++|+.||.|+.-.. ..+.+..+-.+-.+-+ -.|.++.||||......-
T Consensus 45 rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lP 112 (257)
T cd07387 45 RLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHSLP 112 (257)
T ss_pred EEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCcccccCC
Confidence 67889999995422 2233333222211111 368899999998766543
No 266
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=24.53 E-value=4.2e+02 Score=27.16 Aligned_cols=60 Identities=27% Similarity=0.341 Sum_probs=34.6
Q ss_pred CCceEEecCCcchhhhhhccCCHHHHHHHhCCCCchhhhHHHhHhhccccceEEE-eceEEEEcCCCCCC
Q 004198 645 PENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRS 713 (769)
Q Consensus 645 p~~v~llrGNHE~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~f~~lP~~~~i-~~~i~~vHgGi~~~ 713 (769)
-++|++|-||||.-. | |.+.....+..-. ....| ..++.||++-.- +.+|+..|-||-.+
T Consensus 127 nknvvvlagnhein~-n---gny~arlanhkls-~gDTY----nlIKtldVC~YD~erkvltsHHGIird 187 (318)
T PF13258_consen 127 NKNVVVLAGNHEINF-N---GNYMARLANHKLS-AGDTY----NLIKTLDVCNYDPERKVLTSHHGIIRD 187 (318)
T ss_pred ccceEEEecCceecc-C---chHHHHHhhCCCC-ccchh----hccccccccccCcchhhhhcccCceec
Confidence 369999999999732 2 3333322222211 11233 345577777544 35788889998654
No 267
>PTZ00421 coronin; Provisional
Probab=24.46 E-value=1.1e+03 Score=27.10 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=32.1
Q ss_pred EEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCC
Q 004198 111 MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (769)
Q Consensus 111 ~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 189 (769)
.+++.||. ...+.++|+.+.. .-..+. + ... .-.++....++.+++.|+.++ .+.+||+.+.
T Consensus 139 ~iLaSgs~------DgtVrIWDl~tg~-~~~~l~--~-h~~--~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg 200 (493)
T PTZ00421 139 NVLASAGA------DMVVNVWDVERGK-AVEVIK--C-HSD--QITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDG 200 (493)
T ss_pred CEEEEEeC------CCEEEEEECCCCe-EEEEEc--C-CCC--ceEEEEEECCCCEEEEecCCC-----EEEEEECCCC
Confidence 45665653 2448899988732 111221 1 111 111232333446777777654 3778898776
No 268
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=23.90 E-value=4.2e+02 Score=29.85 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=71.5
Q ss_pred cEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCccccc---EEEEecCCEEEEEcccCCCCCcc
Q 004198 156 HVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYA---TASARSDGMFLLCGGRDASGAPL 232 (769)
Q Consensus 156 hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~h---sa~~~~~g~l~v~GG~~~~~~~l 232 (769)
++++....+.+++.|+.. .++|++.+.++ . .+... .+.|. +.....|+.+++.||.++.
T Consensus 85 ~al~s~n~G~~l~ag~i~-----g~lYlWelssG--~--LL~v~-----~aHYQ~ITcL~fs~dgs~iiTgskDg~---- 146 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTIS-----GNLYLWELSSG--I--LLNVL-----SAHYQSITCLKFSDDGSHIITGSKDGA---- 146 (476)
T ss_pred eeeecCCCceEEEeeccc-----CcEEEEEeccc--c--HHHHH-----HhhccceeEEEEeCCCcEEEecCCCcc----
Confidence 445455554555544443 35777777765 1 11111 12222 2234578899999987653
Q ss_pred cceEEEecCCCCceEEEeCC-CCCCCcc---cceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCCcEEeccCCcc
Q 004198 233 ADAYGLLMHRNGQWEWTLAP-GVAPSPR---YQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVT 308 (769)
Q Consensus 233 ~d~~~ld~~~~~~W~W~~~~-~~~P~~R---~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 308 (769)
+..+.... -+... ...|.|+ ..|+..+. +.-+-+||.+..-........+-+||...+.- +.+...
T Consensus 147 --V~vW~l~~-----lv~a~~~~~~~p~~~f~~HtlsIT-Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L--Llti~f 216 (476)
T KOG0646|consen 147 --VLVWLLTD-----LVSADNDHSVKPLHIFSDHTLSIT-DLQIGSGGTNARLYTASEDRTIKLWDLSLGVL--LLTITF 216 (476)
T ss_pred --EEEEEEEe-----ecccccCCCccceeeeccCcceeE-EEEecCCCccceEEEecCCceEEEEEecccee--eEEEec
Confidence 22222210 00000 1122332 23444433 22223444322111112245577888877732 222222
Q ss_pred CCCCCCCCCCCCCccCcccccceEEEEeC-CEEEEEcCcCCCccccceE
Q 004198 309 SSRTSKGHGEHDPSLELMRRCRHASASIG-VRIYIYGGLKGDILLDDFL 356 (769)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~R~~hs~~~~~-~~iyv~GG~~~~~~~~D~~ 356 (769)
++.-+++++-. .+.+-+|+..|..+..+++
T Consensus 217 ------------------p~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 217 ------------------PSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred ------------------CCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 45555555543 4666677777765444443
No 269
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=23.46 E-value=5.8e+02 Score=27.89 Aligned_cols=54 Identities=30% Similarity=0.373 Sum_probs=31.0
Q ss_pred CCcEEEEECCCCc--EEEecCCCCCCccccc-------ceEEEECCEEEEECccCCCCCCcCcEEEEEccCC
Q 004198 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRAA-------HAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTND 136 (769)
Q Consensus 74 ~~dv~~yD~~~~~--W~~l~~~g~~P~~R~~-------hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~ 136 (769)
+.-+..||..+-+ ++..-+ +.+|.. .+...-+..+||+-=. ...++-+.|+..+
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP----~k~R~~~~~~~~~~~ls~dgk~~~V~N~T-----Pa~SVtVVDl~~~ 128 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIP----PKPRAQVVPYKNMFALSADGKFLYVQNFT-----PATSVTVVDLAAK 128 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEET----TS-B--BS--GGGEEE-TTSSEEEEEEES-----SSEEEEEEETTTT
T ss_pred eeEEEEEecCcCcccceEecC----CcchheecccccceEEccCCcEEEEEccC-----CCCeEEEEECCCC
Confidence 5568889999884 654432 233442 1222224477776543 4467889999884
No 270
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=23.24 E-value=1.1e+02 Score=32.08 Aligned_cols=63 Identities=27% Similarity=0.280 Sum_probs=38.5
Q ss_pred CEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHH---HHHHhhhcCCCceEEecCCcchh
Q 004198 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETIT---LLLALKIEYPENVHLIRGNHEAA 658 (769)
Q Consensus 582 ~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~---ll~~lk~~~p~~v~llrGNHE~~ 658 (769)
.++.|+|.|....+.. ..|+.+ -++-+||+-.-|. +-||+. .+-+|.-+ .=+.|+||||.-
T Consensus 63 r~VcisdtH~~~~~i~------~~p~gD------vlihagdfT~~g~-~~ev~~fn~~~gslph~---yKIVIaGNHELt 126 (305)
T KOG3947|consen 63 RFVCISDTHELTFDIN------DIPDGD------VLIHAGDFTNLGL-PEEVIKFNEWLGSLPHE---YKIVIAGNHELT 126 (305)
T ss_pred EEEEecCcccccCccc------cCCCCc------eEEeccCCccccC-HHHHHhhhHHhccCcce---eeEEEeecccee
Confidence 4889999998766533 233322 3466999987554 334443 33333322 447899999975
Q ss_pred hh
Q 004198 659 DI 660 (769)
Q Consensus 659 ~~ 660 (769)
.-
T Consensus 127 Fd 128 (305)
T KOG3947|consen 127 FD 128 (305)
T ss_pred ec
Confidence 43
No 271
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=22.68 E-value=2e+02 Score=24.35 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=45.5
Q ss_pred CCEEEEccCCCCHHHHHHHHHHhCCCCCCCCCcceeEEEeccccCCCCChHHHHHHHHHhhhcCCCceEEecCCc
Q 004198 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (769)
Q Consensus 581 ~~i~viGDiHG~~~~l~~~l~~~~~~~~~~~~~~~~~vfLGD~vDrG~~s~e~l~ll~~lk~~~p~~v~llrGNH 655 (769)
..+.||=|---+...+..+++.+..-...+ ..++.+|+.-|+|....+....+..+...+...+++...|+
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~----~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 82 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKG----RIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDNP 82 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTS----EEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCC----cEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 357777786667888888777663211111 16777999999888888877777666666666655555543
No 272
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=22.56 E-value=2.1e+02 Score=20.00 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=16.4
Q ss_pred ceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCC
Q 004198 261 QHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAA 297 (769)
Q Consensus 261 ~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t 297 (769)
..+.++.++.+|+.+. ...++++|+++
T Consensus 14 ~~~~~v~~g~vyv~~~----------dg~l~ald~~t 40 (40)
T PF13570_consen 14 WSSPAVAGGRVYVGTG----------DGNLYALDAAT 40 (40)
T ss_dssp -S--EECTSEEEEE-T----------TSEEEEEETT-
T ss_pred CcCCEEECCEEEEEcC----------CCEEEEEeCCC
Confidence 3455777888888765 34589999864
No 273
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.71 E-value=9.5e+02 Score=25.26 Aligned_cols=130 Identities=22% Similarity=0.319 Sum_probs=0.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCc--EEEecCCCCCCcccccceEEEECCEEEEECccCCCC
Q 004198 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAG 122 (769)
Q Consensus 45 ~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~--W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~ 122 (769)
+.+-|++=|.. ...+..-|+.+++ |+.+- ..|...++.++++.|++ |+-.++
T Consensus 21 dskT~v~igSH------------------s~~~~avd~~sG~~~We~il------g~RiE~sa~vvgdfVV~--GCy~g~ 74 (354)
T KOG4649|consen 21 DSKTLVVIGSH------------------SGIVIAVDPQSGNLIWEAIL------GVRIECSAIVVGDFVVL--GCYSGG 74 (354)
T ss_pred CCceEEEEecC------------------CceEEEecCCCCcEEeehhh------CceeeeeeEEECCEEEE--EEccCc
Q ss_pred CCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCC
Q 004198 123 HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDR 202 (769)
Q Consensus 123 ~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~ 202 (769)
+|.++.++...-|.-. ..-.-.....+....+ ++..|..++. ++.+|+.+..-.|+ .+.
T Consensus 75 -----lYfl~~~tGs~~w~f~----~~~~vk~~a~~d~~~g--lIycgshd~~-----~yalD~~~~~cVyk-----skc 133 (354)
T KOG4649|consen 75 -----LYFLCVKTGSQIWNFV----ILETVKVRAQCDFDGG--LIYCGSHDGN-----FYALDPKTYGCVYK-----SKC 133 (354)
T ss_pred -----EEEEEecchhheeeee----ehhhhccceEEcCCCc--eEEEecCCCc-----EEEecccccceEEe-----ccc
Q ss_pred CCcccccEEEEecCCEEEE
Q 004198 203 PSARMYATASARSDGMFLL 221 (769)
Q Consensus 203 P~~r~~hsa~~~~~g~l~v 221 (769)
+..-...-+....++.+|+
T Consensus 134 gG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 134 GGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred CCceeccceecCCCceEEE
No 274
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=20.71 E-value=9.2e+02 Score=28.61 Aligned_cols=138 Identities=9% Similarity=0.078 Sum_probs=0.0
Q ss_pred CcccccceeecCCCCCCCccccEEEEecccCCCCCEEEEEcCCCCCCCCCCCCCCCccccccCCcEEEEECCCCcEEEec
Q 004198 12 SYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIR 91 (769)
Q Consensus 12 ~y~~~~~~w~~~~~~P~~R~ght~~~v~~~~~~~~~lyl~GG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~~~~W~~l~ 91 (769)
.|++ ..+-..+.++|..+-..+.+..... ++++++.-- ...+++.++..+-+-+.+.
T Consensus 411 ~~~~-~vk~~~v~~~~~~~~~a~~i~ftid---~~k~~~~s~-------------------~~~~le~~el~~ps~kel~ 467 (691)
T KOG2048|consen 411 QPDP-NVKVINVDDVPLALLDASAISFTID---KNKLFLVSK-------------------NIFSLEEFELETPSFKELK 467 (691)
T ss_pred ccCc-ceeEEEeccchhhhccceeeEEEec---CceEEEEec-------------------ccceeEEEEecCcchhhhh
Q ss_pred CCCCCCcccccceEEEE--CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCccccEEEEECCcEEEEE
Q 004198 92 PAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSV 169 (769)
Q Consensus 92 ~~g~~P~~R~~hs~~~~--~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R~~hs~~~~~~~~l~v~ 169 (769)
.....+..-+=.-++.- |+.|-+.+++ ..+++|++++...+|... .++......+......+.+++
T Consensus 468 ~~~~~~~~~~I~~l~~SsdG~yiaa~~t~-------g~I~v~nl~~~~~~~l~~----rln~~vTa~~~~~~~~~~lvv- 535 (691)
T KOG2048|consen 468 SIQSQAKCPSISRLVVSSDGNYIAAISTR-------GQIFVYNLETLESHLLKV----RLNIDVTAAAFSPFVRNRLVV- 535 (691)
T ss_pred ccccccCCCcceeEEEcCCCCEEEEEecc-------ceEEEEEcccceeecchh----ccCcceeeeeccccccCcEEE-
Q ss_pred ecCCCCCccCceeEEeCCCC
Q 004198 170 SGNDGKRVLSDAWALDTAQK 189 (769)
Q Consensus 170 GG~~~~~~~~dv~~~d~~~~ 189 (769)
...-|.++.||++..
T Consensus 536 -----ats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 536 -----ATSNNQVFEFDIEAR 550 (691)
T ss_pred -----EecCCeEEEEecchh
No 275
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=20.70 E-value=1.6e+03 Score=27.53 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=22.7
Q ss_pred EECCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCC
Q 004198 160 LVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNP 198 (769)
Q Consensus 160 ~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~ 198 (769)
++++ .+|+... .+.|+.+|.++....|+.-..
T Consensus 192 vvgg-~lYv~t~------~~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 192 KVGD-TLYLCTP------HNKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred EECC-EEEEECC------CCeEEEEECCCCcEEEEEcCC
Confidence 4444 8888643 357999999988778987543
No 276
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=20.44 E-value=4.1e+02 Score=28.60 Aligned_cols=134 Identities=16% Similarity=0.246 Sum_probs=67.1
Q ss_pred CCcEEEEECCCCc-EEEecCCCCCCcccccceEEEECCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCC
Q 004198 74 TNSVHLYDVLTRK-WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (769)
Q Consensus 74 ~~dv~~yD~~~~~-W~~l~~~g~~P~~R~~hs~~~~~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~ 152 (769)
+.++++|....++ |++.....+--..-.+-..+...++|.- ++. .+.-|++....+ .+|....+ .-
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvt-cs~------drnayVw~~~~~-~~Wkptlv-----Ll 97 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVT-CSH------DRNAYVWTQPSG-GTWKPTLV-----LL 97 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeE-ccC------CCCccccccCCC-Ceecccee-----EE
Confidence 5699999999988 9988765322111111111111234433 332 233566666322 56877643 22
Q ss_pred ccccEEEEE----CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCC
Q 004198 153 RYGHVMDLV----SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS 228 (769)
Q Consensus 153 R~~hs~~~~----~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~ 228 (769)
|..-++..+ ..+++.+.+| ..+-.|++|.-+++ -|-.-... .|..-.--+..-+.|+.+...|+.+..
T Consensus 98 RiNrAAt~V~WsP~enkFAVgSg----ar~isVcy~E~ENd--WWVsKhik--kPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 98 RINRAATCVKWSPKENKFAVGSG----ARLISVCYYEQEND--WWVSKHIK--KPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred EeccceeeEeecCcCceEEeccC----ccEEEEEEEecccc--eehhhhhC--CccccceeeeeccCCcceecccccCcc
Confidence 333333222 2324444444 23556888888876 34332222 122111222333577788888876654
No 277
>PRK02889 tolB translocation protein TolB; Provisional
Probab=20.43 E-value=1.2e+03 Score=26.00 Aligned_cols=184 Identities=14% Similarity=0.126 Sum_probs=85.5
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccccceEEEE-CCEEEEECccCCCCCCcCcEEEEEccCCcceEEEeeecCCCCCCc
Q 004198 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (769)
Q Consensus 75 ~dv~~yD~~~~~W~~l~~~g~~P~~R~~hs~~~~-~~~Iyv~GG~~~~~~~~~dl~~~d~~t~~~~W~~~~~~g~~p~~R 153 (769)
..+|.+|+.+++=..+... +. ........- +++|++..... ...++|.+|..+. ...++. .... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~~---~g-~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~--~~~~lt---~~~~-~ 285 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF---KG-SNSAPAWSPDGRTLAVALSRD----GNSQIYTVNADGS--GLRRLT---QSSG-I 285 (427)
T ss_pred cEEEEEECCCCCEEEeecC---CC-CccceEECCCCCEEEEEEccC----CCceEEEEECCCC--CcEECC---CCCC-C
Confidence 4699999988876666432 11 111112222 34565543321 1367999998763 345552 1111 1
Q ss_pred cccEEEEE-CCcEEEEEecCCCCCccCceeEEeCCCCCceEEEcCCCCCCCCcccccEEEEecCCEEEEEcccCCCCCcc
Q 004198 154 YGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPL 232 (769)
Q Consensus 154 ~~hs~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~~~W~~v~~~~~~P~~r~~hsa~~~~~g~l~v~GG~~~~~~~l 232 (769)
.. ..... +++.++......+ ...+|.++..+. ..+.+...+ ..........+|..+++...... .
T Consensus 286 ~~-~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g--~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g---~ 351 (427)
T PRK02889 286 DT-EPFFSPDGRSIYFTSDRGG---APQIYRMPASGG--AAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG---A 351 (427)
T ss_pred Cc-CeEEcCCCCEEEEEecCCC---CcEEEEEECCCC--ceEEEecCC-----CCcCceEECCCCCEEEEEEccCC---c
Confidence 11 12223 3334444332222 246888888766 566654321 11222334456655555433221 1
Q ss_pred cceEEEecCCCCceEEEeCCCCCCCcccceEEEEeCCEEEEEecccCCCCcccCCCcEEEEECCCC
Q 004198 233 ADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG 298 (769)
Q Consensus 233 ~d~~~ld~~~~~~W~W~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yd~~t~ 298 (769)
..++.++.... ... .+... .........-+++.+++.....+ ...+++.+....
T Consensus 352 ~~I~v~d~~~g-~~~--~lt~~---~~~~~p~~spdg~~l~~~~~~~g------~~~l~~~~~~g~ 405 (427)
T PRK02889 352 FKLYVQDLATG-QVT--ALTDT---TRDESPSFAPNGRYILYATQQGG------RSVLAAVSSDGR 405 (427)
T ss_pred EEEEEEECCCC-CeE--EccCC---CCccCceECCCCCEEEEEEecCC------CEEEEEEECCCC
Confidence 36777877644 222 22211 01111122236666666553322 234777777543
Done!