Query 004199
Match_columns 769
No_of_seqs 191 out of 762
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 17:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nut_A Protein transport prote 100.0 6E-162 2E-166 1431.4 74.2 742 1-769 5-766 (769)
2 1m2o_A SEC23, protein transpor 100.0 8E-162 3E-166 1432.0 71.3 744 2-769 1-765 (768)
3 3eh1_A Protein transport prote 100.0 3E-133 1E-137 1177.7 66.4 665 6-769 36-751 (751)
4 3efo_B SEC24 related gene fami 100.0 3E-133 9E-138 1183.4 58.8 672 7-768 44-766 (770)
5 3eh2_A Protein transport prote 100.0 4E-132 1E-136 1172.7 59.8 671 7-768 40-762 (766)
6 1m2v_B SEC24, protein transpor 100.0 1E-128 4E-133 1154.4 59.0 672 6-769 175-926 (926)
7 1pcx_A Protein transport prote 100.0 2E-128 7E-133 1148.6 61.5 672 6-769 59-810 (810)
8 2yrc_A Protein transport prote 99.6 2.9E-17 9.9E-22 127.4 2.0 52 54-105 5-58 (59)
9 4fx5_A VON willebrand factor t 99.2 8E-08 2.7E-12 107.7 36.6 276 128-514 76-361 (464)
10 3ibs_A Conserved hypothetical 98.6 2.7E-06 9.3E-11 85.2 19.8 157 128-383 10-197 (218)
11 4b4t_W RPN10, 26S proteasome r 98.3 7.9E-06 2.7E-10 84.0 13.9 147 131-376 5-163 (268)
12 1ijb_A VON willebrand factor; 98.2 8.2E-05 2.8E-09 73.6 18.6 163 128-386 12-183 (202)
13 1q0p_A Complement factor B; VO 98.2 5.4E-05 1.8E-09 75.8 17.3 172 128-385 14-206 (223)
14 2b2x_A Integrin alpha-1; compu 98.1 6.8E-05 2.3E-09 75.4 17.3 161 128-386 21-199 (223)
15 1v7p_C Integrin alpha-2; snake 98.1 7.2E-05 2.5E-09 73.8 16.9 162 128-386 5-183 (200)
16 1atz_A VON willebrand factor; 98.1 0.00021 7.3E-09 69.6 18.9 158 128-386 4-172 (189)
17 1shu_X Anthrax toxin receptor 98.0 0.00024 8.2E-09 68.5 17.9 157 128-385 5-168 (182)
18 1pt6_A Integrin alpha-1; cell 98.0 0.0001 3.6E-09 73.4 15.6 162 128-386 6-184 (213)
19 2x31_A Magnesium-chelatase 60 98.0 1E-06 3.4E-11 86.4 0.1 110 128-306 4-118 (189)
20 1n3y_A Integrin alpha-X; alpha 98.0 7E-05 2.4E-09 73.5 13.5 163 128-386 8-181 (198)
21 1mf7_A Integrin alpha M; cell 97.9 6.2E-05 2.1E-09 73.8 12.2 163 128-386 4-177 (194)
22 2x5n_A SPRPN10, 26S proteasome 97.9 0.00021 7.1E-09 70.2 15.6 154 131-384 4-173 (192)
23 1rrk_A Complement factor B; BB 97.9 0.00012 4.1E-09 82.8 15.8 186 130-397 2-202 (497)
24 2odp_A Complement C2; C3/C5 co 97.9 0.00012 4E-09 83.3 15.0 177 128-397 8-210 (509)
25 4hqf_A Thrombospondin-related 97.8 0.00036 1.2E-08 72.7 16.1 165 128-386 20-197 (281)
26 1mjn_A Integrin alpha-L; rossm 97.8 0.00029 1E-08 68.1 14.0 154 129-386 2-167 (179)
27 1kcq_A Gelsolin, brevin, ADF, 97.7 0.00016 5.4E-09 63.5 9.2 87 629-732 2-91 (104)
28 4hqo_A Sporozoite surface prot 97.7 0.00055 1.9E-08 70.8 15.0 164 128-385 17-193 (266)
29 3n2n_F Anthrax toxin receptor 97.7 0.0014 4.6E-08 63.3 16.7 157 128-383 6-168 (185)
30 3zqk_A VON willebrand factor; 97.5 0.0025 8.6E-08 62.6 16.3 49 128-176 20-73 (199)
31 3hrz_D Complement factor B; se 97.5 0.00021 7.2E-09 85.1 10.0 177 129-385 243-434 (741)
32 2xgg_A Microneme protein 2; A/ 97.4 0.0035 1.2E-07 60.3 15.1 143 128-367 16-168 (178)
33 1svq_A Severin; actin-binding; 97.2 0.00039 1.3E-08 62.0 6.2 85 628-728 11-99 (114)
34 3k6s_A Integrin alpha-X; cell 96.9 0.0017 5.7E-08 80.1 9.7 163 128-386 129-302 (1095)
35 1jey_B KU80; double-strand DNA 96.9 0.0058 2E-07 70.1 13.4 145 130-358 8-168 (565)
36 3t3p_B Integrin beta-3; integr 96.3 0.37 1.3E-05 52.9 21.7 209 128-381 110-333 (472)
37 1j72_A Macrophage capping prot 96.0 0.01 3.6E-07 63.6 7.4 79 628-722 246-335 (347)
38 2fh1_A Gelsolin; calcium, cont 96.0 0.0074 2.5E-07 64.7 6.2 47 628-674 227-278 (344)
39 3fg7_A Villin-1; actin binding 95.9 0.0097 3.3E-07 64.8 7.0 47 628-674 281-331 (398)
40 3fcs_B Integrin beta-3; beta p 95.8 0.45 1.5E-05 55.3 20.5 246 128-424 110-370 (690)
41 1j72_A Macrophage capping prot 95.2 0.047 1.6E-06 58.5 9.1 87 629-732 135-224 (347)
42 3v4v_B Integrin beta-7; cell a 95.2 2.3 7.8E-05 47.0 22.4 282 128-472 131-427 (503)
43 3fg6_A Adseverin, scinderin; C 95.2 0.012 4E-07 63.6 4.4 47 628-674 268-319 (371)
44 1jey_A KU70; double-strand DNA 94.7 0.72 2.4E-05 53.1 17.8 68 268-360 140-208 (609)
45 2ww8_A RRGA, cell WALL surface 94.5 0.14 4.8E-06 61.4 11.5 153 128-305 223-394 (893)
46 1d0n_A Horse plasma gelsolin; 94.5 0.041 1.4E-06 64.9 6.7 49 626-674 610-663 (729)
47 3vi3_B Integrin beta-1; beta p 94.4 4.8 0.00016 43.9 22.2 201 128-376 121-334 (454)
48 1d0n_A Horse plasma gelsolin; 93.6 0.13 4.5E-06 60.6 8.7 88 628-732 132-222 (729)
49 3rag_A Uncharacterized protein 92.1 0.13 4.4E-06 51.5 4.9 46 128-173 133-182 (242)
50 2fh1_A Gelsolin; calcium, cont 92.0 0.19 6.5E-06 53.6 6.5 78 629-728 124-205 (344)
51 3fg6_A Adseverin, scinderin; C 91.5 0.33 1.1E-05 52.3 7.7 46 629-674 165-215 (371)
52 3k6s_B Integrin beta-2; cell r 90.0 1 3.6E-05 52.2 10.5 209 128-382 103-324 (687)
53 2iue_A Pactolus I-domain; memb 89.4 9.2 0.00032 37.4 15.3 46 128-173 2-51 (212)
54 1yvr_A RO autoantigen, 60-kDa 89.3 0.69 2.4E-05 52.4 8.2 32 268-304 444-475 (538)
55 2j9u_B VPS36, vacuolar protein 86.8 0.24 8.3E-06 39.4 1.6 20 78-97 15-34 (76)
56 3fg7_A Villin-1; actin binding 83.7 0.22 7.4E-06 54.2 0.0 46 629-674 178-227 (398)
57 1gh9_A 8.3 kDa protein (gene M 74.0 0.96 3.3E-05 36.0 1.0 31 56-92 2-32 (71)
58 2gmg_A Hypothetical protein PF 71.2 1.1 3.8E-05 38.3 0.8 35 57-96 66-100 (105)
59 2a20_A Regulating synaptic mem 68.7 1.1 3.7E-05 33.8 0.1 29 57-89 32-60 (62)
60 1pft_A TFIIB, PFTFIIBN; N-term 65.2 7.7 0.00026 28.3 4.3 29 58-89 5-33 (50)
61 3rag_A Uncharacterized protein 64.5 21 0.00073 35.4 8.6 44 340-383 29-76 (242)
62 1vq8_Z 50S ribosomal protein L 62.8 4 0.00014 33.5 2.5 30 58-91 27-56 (83)
63 2nvo_A RO sixty-related protei 61.0 13 0.00043 41.9 7.1 32 268-304 440-471 (535)
64 4gat_A Nitrogen regulatory pro 56.7 4.5 0.00016 31.6 1.7 33 56-89 7-39 (66)
65 6rxn_A Rubredoxin; electron tr 49.3 3 0.0001 30.1 -0.4 31 59-89 5-39 (46)
66 1s24_A Rubredoxin 2; electron 46.1 3.5 0.00012 34.1 -0.5 33 57-89 34-77 (87)
67 2vut_I AREA, nitrogen regulato 45.2 5.4 0.00018 28.3 0.4 31 58-89 1-31 (43)
68 1yuz_A Nigerythrin; rubrythrin 44.8 6 0.00021 38.4 0.8 25 58-89 171-195 (202)
69 1yk4_A Rubredoxin, RD; electro 41.0 4.8 0.00016 29.9 -0.4 10 79-88 34-43 (52)
70 2apo_B Ribosome biogenesis pro 40.6 17 0.00059 27.7 2.6 35 56-100 4-40 (60)
71 3j21_g 50S ribosomal protein L 37.7 10 0.00034 28.0 0.9 29 57-93 13-41 (51)
72 2hgo_A CASSIICOLIN; toxin, dis 37.4 14 0.00047 22.4 1.2 26 60-86 2-27 (27)
73 1x0t_A Ribonuclease P protein 37.2 12 0.00041 33.0 1.5 35 59-93 66-107 (120)
74 2csz_A Synaptotagmin-like prot 36.7 12 0.00039 30.1 1.1 31 59-89 43-73 (76)
75 4rxn_A Rubredoxin; electron tr 36.6 6.6 0.00023 29.4 -0.2 11 79-89 35-45 (54)
76 1e8j_A Rubredoxin; iron-sulfur 35.8 6.7 0.00023 29.1 -0.3 10 80-89 3-12 (52)
77 3j20_Y 30S ribosomal protein S 35.1 18 0.00063 26.5 1.9 26 58-89 19-46 (50)
78 1dx8_A Rubredoxin; electron tr 34.5 7.7 0.00026 30.7 -0.2 31 59-89 8-49 (70)
79 1gnf_A Transcription factor GA 33.8 6.4 0.00022 28.4 -0.7 31 58-89 4-34 (46)
80 2v3b_B Rubredoxin 2, rubredoxi 33.7 7.2 0.00025 29.3 -0.5 9 80-88 36-44 (55)
81 2kn9_A Rubredoxin; metalloprot 32.5 7.2 0.00025 31.8 -0.7 10 79-88 59-68 (81)
82 1w7p_D VPS36P, YLR417W; ESCRT- 31.0 10 0.00035 42.5 0.0 20 78-97 115-134 (566)
83 2lk0_A RNA-binding protein 5; 28.3 16 0.00054 24.0 0.6 14 79-92 4-17 (32)
84 2kdx_A HYPA, hydrogenase/ureas 27.3 19 0.00065 31.5 1.1 28 58-91 73-101 (119)
85 2k3r_A Ribonuclease P protein 25.8 20 0.00068 31.7 0.9 35 59-93 61-102 (123)
86 1dl6_A Transcription factor II 25.7 41 0.0014 25.4 2.5 29 58-89 11-39 (58)
87 4hc9_A Trans-acting T-cell-spe 24.9 17 0.00057 31.8 0.2 31 58-89 5-35 (115)
88 2dj7_A Actin-binding LIM prote 24.2 79 0.0027 25.1 4.2 38 52-89 9-51 (80)
89 2c6a_A Ubiquitin-protein ligas 23.8 34 0.0012 24.5 1.6 19 79-97 12-30 (46)
90 2zet_C Melanophilin; complex, 22.8 16 0.00055 33.7 -0.3 31 60-90 87-118 (153)
91 1nj3_A NPL4; NZF domain, rubre 22.6 28 0.00096 22.5 0.9 17 78-94 4-20 (31)
92 2k1p_A Zinc finger RAN-binding 22.2 23 0.00077 23.5 0.4 14 79-92 5-18 (33)
93 2cr8_A MDM4 protein; ZF-ranbp 22.1 36 0.0012 24.8 1.4 20 78-97 9-28 (53)
94 2avu_E Flagellar transcription 21.8 16 0.00055 34.8 -0.5 28 57-87 133-161 (192)
95 1zso_A Hypothetical protein; s 21.7 24 0.00081 32.9 0.6 35 58-92 37-82 (164)
96 1zbd_B Rabphilin-3A; G protein 21.5 32 0.0011 30.9 1.4 33 59-91 73-109 (134)
97 2akl_A PHNA-like protein PA012 21.3 43 0.0015 29.6 2.1 29 57-90 26-54 (138)
98 3gj5_B Nuclear pore complex pr 20.8 29 0.00098 23.3 0.7 19 78-96 5-23 (34)
99 2js4_A UPF0434 protein BB2007; 20.6 86 0.0029 24.6 3.5 32 57-92 7-38 (70)
100 3u50_C Telomerase-associated p 20.5 46 0.0016 31.2 2.3 26 59-89 43-68 (172)
101 1wii_A Hypothetical UPF0222 pr 20.3 22 0.00076 29.2 0.1 15 79-93 22-36 (85)
102 2jny_A Uncharacterized BCR; st 20.1 91 0.0031 24.3 3.6 32 57-92 9-40 (67)
No 1
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=5.8e-162 Score=1431.37 Aligned_cols=742 Identities=49% Similarity=0.899 Sum_probs=673.1
Q ss_pred CCCccc----ccCCCeeeecCCCCCCCHHHhhcCCCceeEEEccCCCCCCCCCCCCCCCCCCccCCC--CCceecCccEE
Q 004199 1 MTEFMD----LEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIV 74 (769)
Q Consensus 1 ~~~~~~----~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~~p~rC~~--C~aylNp~~~~ 74 (769)
||||.+ ||+++|||+|||+||.+++++++++|||||+|+||++.+ ++|+++++|+||++ |+|||||||+|
T Consensus 5 ~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~~~pvRC~~~~CrayiNPf~~~ 80 (769)
T 2nut_A 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQYEPVLCSRTTCRAVLNPLCQV 80 (769)
T ss_dssp --CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS----CCCCBCSCCCBCSSTTCCCBCCTTSEE
T ss_pred ccchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCC----CCCcCCCCCCcCCCCCCCeEECCceEE
Confidence 788764 799999999999999999999999999999999999764 68999999999999 99999999999
Q ss_pred EcCCceEEecCCCCCCCCCcCCCCCCCCCCCccccCCCccEEEecCCCCCCCCCCcEEEEEEEcCcchhHHHHHHHHHHH
Q 004199 75 DFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQ 154 (769)
Q Consensus 75 ~~~~~~w~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~~~~~~~~p~~vFvID~s~~~~~l~~~~~~l~~ 154 (769)
+.+|++|+||||++.|++|++|.++++.++||||.|+++||||++|++.| .||+|+||||+|.+++++++++++|++
T Consensus 81 ~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~p---~pp~~vFvIDvS~~a~~l~~l~~si~~ 157 (769)
T 2nut_A 81 DYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQ---MPLIFLYVVDTCMEDEDLQALKESMQM 157 (769)
T ss_dssp ETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSCC---CCCEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred eCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCCC---CCCEEEEEEECCccHHHHHHHHHHHHH
Confidence 99999999999999999999998888889999997779999999998777 899999999999999999999999999
Q ss_pred hcccCCCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHHHHHhhcccC---C-----CCCCCccccCcCC
Q 004199 155 AIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIK---K-----PKPSTGVIAGVRD 226 (769)
Q Consensus 155 ~l~~lp~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~---~-----~~~~~~~~~~~~~ 226 (769)
+|+.||++++|||||||++||||+++ .+ .+++++||+|+++|+.+++++++++++. . +++
T Consensus 158 ~L~~Lp~~~~VGlITf~~~v~~y~l~-~~-~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~---------- 225 (769)
T 2nut_A 158 SLSLLPPTALVGLITFGRMVQVHELG-CE-GISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQ---------- 225 (769)
T ss_dssp HHTTSCTTCEEEEEEESSEEEEEESS-CC-SSCEEEEEETTSCCCSHHHHHHHC--------------------------
T ss_pred HHHhCCCCceEEEEEeCCEEEEEeCC-CC-CCccceeecCCccccHHHHHHHhCCCCccccccccccccc----------
Confidence 99999999999999999999999999 66 6889999999999999999998876430 0 111
Q ss_pred CCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCc
Q 004199 227 GLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPA 306 (769)
Q Consensus 227 ~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggrI~~F~sg~pt~GpG 306 (769)
+ +.|+++||+|++||++.|.++|++|+++.|++++++++.||+|+||++|..+|++++++.||||++|++|+||.|||
T Consensus 226 -f-~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG 303 (769)
T 2nut_A 226 -Q-PPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPG 303 (769)
T ss_dssp -----CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSS
T ss_pred -C-CCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCC
Confidence 0 14568999999999999999999999998999999999999999999999999987788999999999999999999
Q ss_pred ccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhhhhhhhhccCceEEEeCCCCc
Q 004199 307 AIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGH 386 (769)
Q Consensus 307 ~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~m~~l~~~TGG~v~~~~~f~~ 386 (769)
+|+.++.++++|+|+|++|+++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.
T Consensus 304 ~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~ 383 (769)
T 2nut_A 304 MVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNT 383 (769)
T ss_dssp CCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSS
T ss_pred CCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCch
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHh-hcCccCccceeeeEEEEEecCCceEEeEEcCCcccCCCCCCccccccccCCCCceeEecCCCCceEEE
Q 004199 387 AVFKDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCL 465 (769)
Q Consensus 387 ~~~~~~l~~~~-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~~~~~~l~~~~~~~s~~~ 465 (769)
++|+++|+|.| ++.++++.+||+|+||||||+|++|++++||++++++|++++||+++|+++++.|+++++++++||+|
T Consensus 384 ~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v 463 (769)
T 2nut_A 384 SLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAI 463 (769)
T ss_dssp HHHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEE
T ss_pred hhHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEE
Confidence 99999999999 55555567999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcccccCCCCeEEEEEEEEeEecCCcEEEEEEecccccccCCCCH---HHHHhccCHHHHHHHHHHHHHHH
Q 004199 466 VFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSV---QDLIAGFDQEAAAVVMARLVSFK 542 (769)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~~t~~~~~~---~~i~~~~D~ea~~~llar~a~~~ 542 (769)
+|++++.... ++ ..+..+|||+|++||+.+|+|||||||+++|++++ . .++++++|+||++++|||+|+.+
T Consensus 464 ~f~~~~~~~~--~l-~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~---~~~~~~v~~~~Dqea~~~llar~a~~~ 537 (769)
T 2nut_A 464 YFEVVNQHNA--PI-PQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADA---QTQIQNIAASFDQEAAAILMARLAIYR 537 (769)
T ss_dssp EEEEC-------------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCG---GGHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred EEEecCcccc--cc-CCCCeEEEEEEEEEECCCCCEEEEEEeecccccCC---cccHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999997421 11 24578999999999999999999999999999984 4 59999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHhcccccCCCCccccCccccchHHHHHHHhcccCcCCCCCChHHHHHHHHHHccCChh
Q 004199 543 MEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVT 622 (769)
Q Consensus 543 ~~~~~~~d~~~~l~~~l~~~~~~~~~y~~~~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~~~~~ 622 (769)
+.+++..|+|+||+++|+++|++|+.|||+++++|+||++||+||+|||+|+||++|++++++||||+|+++.++++++.
T Consensus 538 ~~~~~~~d~~~~ld~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~ 617 (769)
T 2nut_A 538 AETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLT 617 (769)
T ss_dssp HTTC---CHHHHHHHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccceeEeecCCCCCccccccccccccCeEEEEeCCcEEEEEECCCchHHHHccCCCCchhHHHHHhhhCcHHHHH
Q 004199 623 NSVVMIQPSLISYSFHSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAG 702 (769)
Q Consensus 623 ~~~~~i~P~L~~~~~~~~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 702 (769)
+++.||||+||++|.++.|++++||+++|.+|||||||+|++|+||+|+++++|++++|+++|+|++++++|++|+++|+
T Consensus 618 ~~~~~iyP~L~~~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~a~ 697 (769)
T 2nut_A 618 QSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQ 697 (769)
T ss_dssp HHHHHHSCEEEEECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCEEEeccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEcCCCChHHHHHhhhCCCCcCCCCCCCC--CCceeecCCchHHHHHHHHHHHhhC
Q 004199 703 VIMKERFPVPRLVICDQHGSQARFLLAKLNPSATYNSDAQIP--GGDIIFTDDVSFEVFLDHLQRLAVQ 769 (769)
Q Consensus 703 ~l~~~R~~~p~~~~~~~g~s~~r~l~s~L~p~~~~~~~~~~~--~~~~~~tdd~S~~~f~~~l~~~~~~ 769 (769)
+++++|+|+|++++|+||+||+|||++||||+++|++.+|++ ++++++|||+||++||+||+|+||+
T Consensus 698 ~i~~~R~p~Pr~i~~~~g~sqaRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~~~~v~ 766 (769)
T 2nut_A 698 EILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVS 766 (769)
T ss_dssp HHHHHSSSCCEEEEEETTCSTTHHHHHHCC----------------------CCSHHHHHHHHHHHHSS
T ss_pred HHHhcCCCCCeEEEEcCCCcHHHHHHHhcCCcccccCCCcCCCcCCccccccccCHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999997644432 3789999999999999999999996
No 2
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=8e-162 Score=1431.95 Aligned_cols=744 Identities=44% Similarity=0.800 Sum_probs=684.6
Q ss_pred CCcccccCCCeeeecCCCCCCCHHHhhcCCCceeEEEccCCCCCCCCCCCCCCCCCCccCCC--CCceecCccEEEcCCc
Q 004199 2 TEFMDLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRT--CRSILNPFSIVDFAAK 79 (769)
Q Consensus 2 ~~~~~~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~~p~rC~~--C~aylNp~~~~~~~~~ 79 (769)
|||+++|+++|||+|||+||.|++++++++|||||+|+||++.+ ++|+++++|+||++ |+|||||||+|+.+|+
T Consensus 1 ~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~ 76 (768)
T 1m2o_A 1 MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYD----ELNVAPYNPVVCSGPHCKSILNPYCVIDPRNS 76 (768)
T ss_dssp -CHHHHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCT----TCCEECSCCCBCCSTTTCCBCCTTSCEETTTT
T ss_pred CCcccccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCC----CCCcCCCCCCccCCCCCCeEECCceEEeCCCC
Confidence 89999999999999999999999999999999999999999754 68999999999999 9999999999999999
Q ss_pred eEEecCCCCCCCCCcCCCCCCCCCCCccccCCCccEEEecCCCCCCCCCCcEEEEEEEcCcchhHHHHHHHHHHHhcccC
Q 004199 80 IWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLL 159 (769)
Q Consensus 80 ~w~C~~C~~~N~~p~~y~~~~~~~~~pEL~~~~~tvey~~~~~~~~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l 159 (769)
+|+||||++.|++|++|.++++.++||||. ++||||++|+++| .||+|+||||+|.+++++++++++|+++|+.|
T Consensus 77 ~W~C~~C~~~N~~P~~y~~~~~~~~~pEL~--~~tvEy~~p~~~~---~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~L 151 (768)
T 1m2o_A 77 SWSCPICNSRNHLPPQYTNLSQENMPLELQ--STTIEYITNKPVT---VPPIFFFVVDLTSETENLDSLKESIITSLSLL 151 (768)
T ss_dssp EECCTTTCCCCBCCGGGCC---CCCCGGGT--CSEEEEECSCCCC---SCCEEEEEEECCSCHHHHHHHHHHHHHHHHTS
T ss_pred EEEcccCCCCCCCChHHccCCcccCChhhc--cCCEEEECCCCCC---CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998888889999996 9999999999888 89999999999999999999999999999999
Q ss_pred CCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHHHHHh-hcccC----C-----CCCCCccccCcCCCCC
Q 004199 160 PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQL-NFFIK----K-----PKPSTGVIAGVRDGLS 229 (769)
Q Consensus 160 p~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~-~~~~~----~-----~~~~~~~~~~~~~~~~ 229 (769)
|++++|||||||+.||||+++ .+ .+++++||+|+++|+.+++++++ ++++. . ++++ . ..
T Consensus 152 p~~~~VGlITf~~~V~~y~l~-~~-~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f------~---p~ 220 (768)
T 1m2o_A 152 PPNALIGLITYGNVVQLHDLS-SE-TIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMN------K---VT 220 (768)
T ss_dssp CTTCEEEEEEESSEEEECCCS-SS-SSEEEEEEETTSCCCHHHHHHHHHSCCCC------------------------CC
T ss_pred CCCCEEEEEEECCEEEEEECC-CC-CCcceeeecCCccccHHHHHHHHhhccccccCCcccccccccc------c---cc
Confidence 999999999999999999999 66 58999999999999999999998 76541 0 1110 0 00
Q ss_pred ccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCcccc
Q 004199 230 SDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAIV 309 (769)
Q Consensus 230 ~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggrI~~F~sg~pt~GpG~l~ 309 (769)
+.|.++||+|++||++.|.++|++|++++|++++++++.||+|+||++|..+|++++++.||||++|++|+||.|||+|+
T Consensus 221 ~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~ 300 (768)
T 1m2o_A 221 PFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIV 300 (768)
T ss_dssp SSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCS
T ss_pred cCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccc
Confidence 12348999999999999999999999999999999999999999999999999987788999999999999999999999
Q ss_pred cCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhhhhhhhhccCceEEEeCCCCchhh
Q 004199 310 SKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHAVF 389 (769)
Q Consensus 310 ~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~m~~l~~~TGG~v~~~~~f~~~~~ 389 (769)
.++.++++|+|+|++|+++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|
T Consensus 301 ~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~ 380 (768)
T 1m2o_A 301 NSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIF 380 (768)
T ss_dssp CSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHH
T ss_pred ccccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-hcCccCccceeeeEEEEEecCCceEEeEEcCCcccCC-CCCCccccccccCCCCceeEecCCCCceEEEEE
Q 004199 390 KDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEK-KGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVF 467 (769)
Q Consensus 390 ~~~l~~~~-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~-~~~~vsd~~~g~~~~~~~~l~~~~~~~s~~~~~ 467 (769)
+++++|.| ++..+++++||+|+||||||+|++|++++||+++.++ |++++||+++|+++++.|+++++++++|++|+|
T Consensus 381 ~~~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f 460 (768)
T 1m2o_A 381 KQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFF 460 (768)
T ss_dssp HHHHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEE
T ss_pred HHHHHHHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEE
Confidence 99999999 5665567899999999999999999999999999877 889999999999999999999999999999999
Q ss_pred EEecCCCCcc-----cccC--CCCeEEEEEEEEeEecCCcEEEEEEecccccccCCCCHHHHHhccCHHHHHHHHHHHHH
Q 004199 468 EIVKKEIPDA-----TLQS--TNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVS 540 (769)
Q Consensus 468 ~~~~~~~~~~-----~~~~--~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~~t~~~~~~~~i~~~~D~ea~~~llar~a~ 540 (769)
++++...... ++ . ....+|||+|++||+.+|+|||||||+++|++++ ++.++++++|+||++++|||+|+
T Consensus 461 ~~~~~~~~~~~~~~~~l-~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~--~~~~v~~~~Dqea~~~llar~av 537 (768)
T 1m2o_A 461 EIANTAANSNPMMSAPG-SADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPF--GTPAIAASFDQEAAAVLMARIAV 537 (768)
T ss_dssp EECCC------------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECT--TCHHHHHTBCHHHHHHHHHHHHH
T ss_pred Eeccccccccccccccc-cccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccCc--cHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999763100 00 1 3578999999999999999999999999999962 37899999999999999999999
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHHHhcccccCCCCccccCccccchHHHHHHHhcccCcCCCCCChHHHHHHHHHHccCC
Q 004199 541 FKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPSSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNREN 620 (769)
Q Consensus 541 ~~~~~~~~~d~~~~l~~~l~~~~~~~~~y~~~~~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~~~ 620 (769)
.++.+++..|+|+||+++|+++|++|+.|||+++++|+||++||+||+|||+|+||++|++++++||||+|+++.+++++
T Consensus 538 ~~~~~~~~~d~r~~l~~~li~l~~~~~~Yrk~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~ 617 (768)
T 1m2o_A 538 HKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTRED 617 (768)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHSBCCTTCGGGCBCCTTTTHHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTSC
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhcccccCCCCCChhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccceeEeecCCCCCccccccccccccCeEEEEeCCcEEEEEECCCchHHHHccCCCCchhHHHHHhhhCcHHH
Q 004199 621 VTNSVVMIQPSLISYSFHSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDD 700 (769)
Q Consensus 621 ~~~~~~~i~P~L~~~~~~~~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (769)
+.+++.||||+||++|.++.|++++||+++|.+|||||||+|++|+||+|+++++|++++||++|+|++++++|++|+.+
T Consensus 618 ~~~~l~~iyP~L~~~~~~~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~ll~~p~~~ 697 (768)
T 1m2o_A 618 TTNSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLE 697 (768)
T ss_dssp HHHHHHHHSCEEEEECSSSCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCeEEEecCCCCCcceeCcHHHcCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhhHHHHhhhhHHH
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCCChHHHHHhhhCCCCcCCCCCCCCCCceeecCCchHHHHHHHHHHHhhC
Q 004199 701 AGVIMKERFPVPRLVICDQHGSQARFLLAKLNPSATYNSDAQIPGGDIIFTDDVSFEVFLDHLQRLAVQ 769 (769)
Q Consensus 701 ~~~l~~~R~~~p~~~~~~~g~s~~r~l~s~L~p~~~~~~~~~~~~~~~~~tdd~S~~~f~~~l~~~~~~ 769 (769)
|++|+++|+|+|++++|+||++|+|||++||||+++|++.++ ++++.++|||+||++||+||||+||+
T Consensus 698 a~~i~~~R~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~~~-~~~~~i~tdd~S~~~f~~~L~k~~v~ 765 (768)
T 1m2o_A 698 AAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMAR-GGSTIVLTDDVSLQNFMTHLQQVAVS 765 (768)
T ss_dssp HHHHHHTCSSCCEEEEEETTCGGGHHHHTTSBCC------------CCCCCCSCCHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCCceEEEECCCCcHHHHHHHHcCCCcccccccc-CCccccccCCcCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999876433 35678999999999999999999986
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=3.4e-133 Score=1177.69 Aligned_cols=665 Identities=20% Similarity=0.326 Sum_probs=588.4
Q ss_pred cccCCCeeeecCCCCCCCHHHhhcCCCceeEEEccCCCCCCCCCCCCCCCC-CCccCCCCCceecCccEEEcCCceEEec
Q 004199 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPY-APLRCRTCRSILNPFSIVDFAAKIWICP 84 (769)
Q Consensus 6 ~~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~-~p~rC~~C~aylNp~~~~~~~~~~w~C~ 84 (769)
-|++|+|||+|||+||.|++++++++||||++|+||++.. ++|++++ +|+||++|+|||||||+|. ++++|+||
T Consensus 36 ~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~~~~p~RC~rCrayiNPf~~f~-~~~~w~Cn 110 (751)
T 3eh1_A 36 LNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVITSNTIVRCRSCRTYINPFVSFI-DQRRWKCN 110 (751)
T ss_dssp HSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEECCSCCCBCTTTCCBCCTTCEES-SSSEEECT
T ss_pred cCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccCCCCCCcccCccCEeCCceEEe-cCCEEEcc
Confidence 4999999999999999999999999999999999999865 6898876 5899999999999999995 47999999
Q ss_pred CCCCCCCCCcCCC--CC----CCCCCCccccCCCccEEEecCC----CCCCCCCCcEEEEEEEcCcchhH---HHHHHHH
Q 004199 85 FCFQRNHFPPHYA--SI----TDDNLPAELFPQYTTIEYEPPG----PGEKSSVPPVFMFVVDTCIIEEE---MSFLKSA 151 (769)
Q Consensus 85 ~C~~~N~~p~~y~--~~----~~~~~~pEL~~~~~tvey~~~~----~~~~~~~~p~~vFvID~s~~~~~---l~~~~~~ 151 (769)
||+..|++|++|. ++ .+.++||||. ++||||++|+ ++| .||+|+||||+|.++++ +++++++
T Consensus 111 ~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL~--~~tvEy~~p~~y~~r~p---~pp~yvFvIDvs~~a~~~g~l~~~~~s 185 (751)
T 3eh1_A 111 LCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQ--NSTVEFIASSDYMLRPP---QPAVYLFVLDVSHNAVEAGYLTILCQS 185 (751)
T ss_dssp TTCCEEECCGGGC---------CGGGSHHHH--CSEEEEEECGGGCSSSC---CCCEEEEEEECSHHHHHHTHHHHHHHH
T ss_pred cccCCCCCCHHHhcccccccccCcccCchhc--cceEEEEcChhhhcCCC---CCcEEEEEEEccHhhhhhhHHHHHHHH
Confidence 9999999999983 23 2346899997 9999999996 456 89999999999999888 8999999
Q ss_pred HHHhcccCCCCc--eEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHHHHHhhcccCCCCCCCccccCcCCCCC
Q 004199 152 LSQAIDLLPDNS--LVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLS 229 (769)
Q Consensus 152 l~~~l~~lp~~~--~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (769)
|+++|+.||+++ +|||||||++||||+++ .+++.++|+|+ .|++|++
T Consensus 186 l~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~-~~~~~~qmlvv--------~dl~d~f---------------------- 234 (751)
T 3eh1_A 186 LLENLDKLPGDSRTRIGFMTFDSTIHFYNLQ-EGLSQPQMLIV--------SDIDDVF---------------------- 234 (751)
T ss_dssp HHHHTTTSSCCTTCEEEEEEESSSEEEEECC-TTCSSCEEEEE--------SCTTCTT----------------------
T ss_pred HHHHHHhcCCCcCcEEEEEEeCCEEEEEECC-CCcccceeecc--------ccccccC----------------------
Confidence 999999999875 99999999999999999 76678899887 3454443
Q ss_pred cccc-ccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCccc
Q 004199 230 SDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAAI 308 (769)
Q Consensus 230 ~~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggrI~~F~sg~pt~GpG~l 308 (769)
.|+ ++||+|++||++.|+++|++|+. ++++++++.||+|+||++|..+|+ ..||||++|++|+||.|||+|
T Consensus 235 -~P~~~~~lv~l~e~~~~i~~lL~~Lp~---~~~~~~~~~~~~G~AL~aA~~ll~----~~GGrI~~F~sg~pt~GpG~l 306 (751)
T 3eh1_A 235 -LPTPDSLLVNLYESKELIKDLLNALPN---MFTNTRETHSALGPALQAAFKLMS----PTGGRVSVFQTQLPSLGAGLL 306 (751)
T ss_dssp -SCCGGGTSEETTTTHHHHHHHHHHGGG---TSTTCSCCCCCHHHHHHHHHHHHT----TTCEEEEEEECSCCCSSTTCC
T ss_pred -CCChhhhcccHHHHHHHHHHHHHhhhH---hhcCCCCCccchHHHHHHHHHHhh----cCCCEEEEEecCCCCCCCCcc
Confidence 343 78999999999999999999976 688899999999999999999998 589999999999999999999
Q ss_pred ccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhhhhhhhhccCceEEEeCCCCch-
Q 004199 309 VSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHA- 387 (769)
Q Consensus 309 ~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~m~~l~~~TGG~v~~~~~f~~~- 387 (769)
+.++.++ .|+|. |+ +++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+
T Consensus 307 ~~r~~~~-~~~~~---ke-~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~ 381 (751)
T 3eh1_A 307 QSREDPN-QRSST---KV-VQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTH 381 (751)
T ss_dssp CCCCCSC-GGGGS---SS-CTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTT
T ss_pred ccccccc-cCCCc---hh-hhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCccccc
Confidence 9987554 46653 33 689999999999999999999999999999999999999999999999999999999863
Q ss_pred ------hhHHHHHHHhhcCccCccceeeeEEEEEecCCceEEeEEcCCcccCCCCCCccccccccCCCCceeEecCCCCc
Q 004199 388 ------VFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKAT 461 (769)
Q Consensus 388 ------~~~~~l~~~~~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~~~~~~l~~~~~~~ 461 (769)
+|.++|+|.|.+ ++||+|+||||||+|++|++++||++. ++++.|+++++++|+
T Consensus 382 ~~~~~~~f~~dl~r~l~~-----~~gf~a~mrVR~S~glkv~~~~G~~~~---------------~~t~~~~l~~i~~d~ 441 (751)
T 3eh1_A 382 NPSQAEKLQKDLKRYLTR-----KIGFEAVMRIRCTKGLSMHTFHGNFFV---------------RSTDLLSLANINPDA 441 (751)
T ss_dssp BHHHHHHHHHHHHHHHHS-----CCEEEEEEEEEECTTEEEEEEESSSEE---------------CSSSEEEEEEECTTC
T ss_pred chhHHHHHHHHHHHHHhh-----hhccceEEEEEecCCeEEEEeeCCeEe---------------CCCCceEeccCCCCC
Confidence 688888888843 479999999999999999999999985 468899999999999
Q ss_pred eEEEEEEEecCCCCcccccCCCCeEEEEEEEEeEecCCcEEEEEEecccccccCCCCHHHHHhccCHHHHHHHHHHHHHH
Q 004199 462 SLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSF 541 (769)
Q Consensus 462 s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~~t~~~~~~~~i~~~~D~ea~~~llar~a~~ 541 (769)
+++|+|++++++. ....+|||+|++||+.+|+|||||||++++++++ +.++|+++|+||++++|||+|++
T Consensus 442 s~~v~~~~~~~l~-------~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~---~~~v~~~~DqeA~~~llar~av~ 511 (751)
T 3eh1_A 442 GFAVQLSIEESLT-------DTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSS---LADVYAGVDVQAAICLLANMAVD 511 (751)
T ss_dssp CEEEEEEESSCCC-------SCSEEEEEEEEEEECTTSCEEEEEEEEEEEEECS---HHHHHHTBCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCC-------CCCceEEEEEEeeecCCCCEEEEEEEecccccCC---HHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999873 3578999999999999999999999999999984 89999999999999999999999
Q ss_pred HhhcCCchhHHHHHHHHHHHHHHHhcccccCC-CCccccCccccchHHHHHHHhcccCcC-CCCCChHHHHHHHHHHccC
Q 004199 542 KMEIEAEFDPIRWLDKALIHMCSRFGDYQKDS-PSSFSLSPRFSIFPQFMFHLRRSQFVQ-VFNNSPDETAYFRMILNRE 619 (769)
Q Consensus 542 ~~~~~~~~d~~~~l~~~l~~~~~~~~~y~~~~-~~~l~lp~~l~~lP~~~~~L~ks~~l~-~~~~s~Der~~~~~~l~~~ 619 (769)
++.+++..|+|+||++++++++++|+.|.++. +++|+||++||+||+||++|+||.+|+ +++++||||+|+++.++++
T Consensus 512 ~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~~~~~l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~ 591 (751)
T 3eh1_A 512 RSVSSSLSDARDALVNAVVDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQ 591 (751)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHTTCC-----CCEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHS
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCcHHHHHHHHHHHHHHccHhhcCCCCCChhHHHHHHHHHhCC
Confidence 99999999999999999999999888887754 358999999999999999999999999 4799999999999999999
Q ss_pred ChhhhhhhccceeEeecC---------CC----CCccccccccccccCeEEEEeCCcEEEEEECCCch-HHHHccCCCCc
Q 004199 620 NVTNSVVMIQPSLISYSF---------HS----GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIA-QWRKAGYHNQP 685 (769)
Q Consensus 620 ~~~~~~~~i~P~L~~~~~---------~~----~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~-~~~~~~~~~~~ 685 (769)
++.+++.||||+||++|. ++ .|..++||+++|.+|||||||+|++++||+|++++ +|+.+.|+. +
T Consensus 592 ~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv-~ 670 (751)
T 3eh1_A 592 PLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGY-T 670 (751)
T ss_dssp CHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCC-S
T ss_pred CHHHHHhhccceEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCC-C
Confidence 999999999999999984 22 34556779999999999999999999999999999 588888774 3
Q ss_pred hhHHHHH-----------hhhCcHHHHHHHHhcCCCCcEEEEEcCCCChHHHHHhhhCCCCcCCCCCCCCCCceeecCCc
Q 004199 686 EHQAFAQ-----------LLQAPHDDAGVIMKERFPVPRLVICDQHGSQARFLLAKLNPSATYNSDAQIPGGDIIFTDDV 754 (769)
Q Consensus 686 ~~~~~~~-----------~l~~~~~~~~~l~~~R~~~p~~~~~~~g~s~~r~l~s~L~p~~~~~~~~~~~~~~~~~tdd~ 754 (769)
.+..+.. +=+..++.++.++++|..+|+++++++|++.+..|.+.|+||++. +.+
T Consensus 671 ~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l~vvr~~~~~~~~f~~~LvED~~~--------------~~~ 736 (751)
T 3eh1_A 671 NFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTE--------------AAF 736 (751)
T ss_dssp SGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEEEEEESSSSSHHHHHTTCTTSCBT--------------TBC
T ss_pred chhhcCcccccCCCCCCHHHHHHHHHHHHHHhcCCCcceEEEEeCCCchHHHHHHhCcccCCC--------------CCC
Confidence 3322210 001123566788888988999999999999999999999999853 138
Q ss_pred hHHHHHHHHHHHhhC
Q 004199 755 SFEVFLDHLQRLAVQ 769 (769)
Q Consensus 755 S~~~f~~~l~~~~~~ 769 (769)
||.+|++||||.|.+
T Consensus 737 SY~~fL~~~h~~i~~ 751 (751)
T 3eh1_A 737 SYYEFLLHVQQQICK 751 (751)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998854
No 4
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=2.6e-133 Score=1183.37 Aligned_cols=672 Identities=19% Similarity=0.289 Sum_probs=592.4
Q ss_pred ccCCCeeeecCCCCCCCHHHhhcCCCceeEEEccCCCCCCCCCCCCCCC---CCCccCCCCCceecCccEEEcCCceEEe
Q 004199 7 LEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILP---YAPLRCRTCRSILNPFSIVDFAAKIWIC 83 (769)
Q Consensus 7 ~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~---~~p~rC~~C~aylNp~~~~~~~~~~w~C 83 (769)
|++|+|||+|||+||.|+++++++++|||++|+||++..++|.++|+++ ++|+||++|||||||||+|+++|++|+|
T Consensus 44 n~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~C 123 (770)
T 3efo_B 44 NASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQC 123 (770)
T ss_dssp SCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEEC
T ss_pred CCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEEe
Confidence 9999999999999999999999999999999999999887777788874 5899999999999999999999999999
Q ss_pred cCCCCCCCCCcCC-CCCCCC------CCCccccCCCccEEEecCC------CCCCCCCCcEEEEEEEcCcchhH---HHH
Q 004199 84 PFCFQRNHFPPHY-ASITDD------NLPAELFPQYTTIEYEPPG------PGEKSSVPPVFMFVVDTCIIEEE---MSF 147 (769)
Q Consensus 84 ~~C~~~N~~p~~y-~~~~~~------~~~pEL~~~~~tvey~~~~------~~~~~~~~p~~vFvID~s~~~~~---l~~ 147 (769)
|||+..|++|++| ++++.. ++||||. ++||||++|. ++| .||+|+||||+|.++++ +++
T Consensus 124 n~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~--~~tvEf~ap~eY~~~~~~p---~pp~y~FvIDvs~~av~sg~l~~ 198 (770)
T 3efo_B 124 GFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELS--LGSYEYVATLDYCRKSKPP---NPPAFIFMIDVSYSNIKNGLVKL 198 (770)
T ss_dssp TTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHH--CSEEEEECCGGGSGGGSCC---CCCEEEEEEECSHHHHHTTHHHH
T ss_pred ccccccCCCchHhhccccccccccccccCcccc--cCceeeecCHHHhccCCCC---CCcEEEEEEEcchhhccchHHHH
Confidence 9999999999999 565533 4799998 9999999984 456 89999999999999874 999
Q ss_pred HHHHHHHhcccCCCC-------ceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHHHHHhhcccCCCCCCCcc
Q 004199 148 LKSALSQAIDLLPDN-------SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGV 220 (769)
Q Consensus 148 ~~~~l~~~l~~lp~~-------~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (769)
++++|+++|+.||++ ++|||||||++||||+++ ..++.++++|++ |++|++
T Consensus 199 ~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~-~~~~q~q~~vv~--------d~~d~f------------- 256 (770)
T 3efo_B 199 ICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVK-SNLAQPQMMVVT--------DVGEVF------------- 256 (770)
T ss_dssp HHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECC-TTCSSCEEEEEC--------CTTSCC-------------
T ss_pred HHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCC-CcccCceEEEec--------cccccc-------------
Confidence 999999999999975 899999999999999998 666789999873 444433
Q ss_pred ccCcCCCCCcccc-ccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecC
Q 004199 221 IAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGG 299 (769)
Q Consensus 221 ~~~~~~~~~~~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggrI~~F~sg 299 (769)
.|+ ++||+|++||++.|.++|++|++. ++..+.+.+|+|+||++|..+++. .+.||||++|++|
T Consensus 257 ----------~P~~~~~Lv~l~e~~~~i~~lL~~L~~~---~~~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~~F~s~ 321 (770)
T 3efo_B 257 ----------VPLLDGFLVNYQESQSVIHNLLDQIPDM---FADSNENETVFAPVIQAGMEALKA--ADCPGKLFIFHSS 321 (770)
T ss_dssp ----------CCCSSSSSBCTTTTHHHHHHHHHHHHHH---HHTCCCCCCCCHHHHHHHHHHHHH--HTCCEEEEEEECS
T ss_pred ----------CCCccceeeeHHHHHHHHHHHHHhhHhh---ccCCCCCcchHHHHHHHHHHHhcc--CCCCcEEEEEecC
Confidence 454 899999999999999999999873 445556788999999999999984 2589999999999
Q ss_pred CCC-CCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhhhhhhhhccCceE
Q 004199 300 PST-EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLV 378 (769)
Q Consensus 300 ~pt-~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~m~~l~~~TGG~v 378 (769)
+|+ .|||+|+.++.++.+|++ |+ .++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+
T Consensus 322 lP~t~GpG~l~~r~~~~~~~t~----ke-~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 396 (770)
T 3efo_B 322 LPTAEAPGKLKNRDDKKLVNTD----KE-KILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTL 396 (770)
T ss_dssp CCCSSSTTCCCCCCCCCCSSCS----CG-GGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred CCCcCCCccccccccccccCCc----ch-hhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceE
Confidence 555 999999999998888763 44 479999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCchhhHHHHHHHh-hcCccCccceeeeEEEEEecCCceEEeEEcCCcccCCCCCCccccccccCCCCceeEecC
Q 004199 379 VLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGL 457 (769)
Q Consensus 379 ~~~~~f~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~~~~~~l~~~ 457 (769)
++|++|+.+.+.+.|.+.| +.. .+.+||+|+||||||+|++|++++||++. ++++.|+++++
T Consensus 397 ~~y~~F~~~~~~~~f~~dl~~~l--~~~~gf~a~mrVR~S~gl~v~~~~G~~~~---------------~~t~~~~l~~~ 459 (770)
T 3efo_B 397 YKYNNFQMHLDRQQFLNDLRNDI--EKKIGFDAIMRVRTSTGFRATDFFGGILM---------------NNTTDVEMAAI 459 (770)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHH--HSCEEEEEEEEEEECTTEEEEEEESSCBC---------------SSSSCEEEEEE
T ss_pred EEecCCcchhHHHHHHHHHHHhh--hhceeeeEEEEEEecCCeEEEEeECCeeC---------------CCCCceEeccc
Confidence 9999999887777777666 332 24689999999999999999999999873 46889999999
Q ss_pred CCCceEEEEEEEecCCCCcccccCCCCeEEEEEEEEeEecCCcEEEEEEecccccccCCCCHHHHHhccCHHHHHHHHHH
Q 004199 458 DKATSLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMAR 537 (769)
Q Consensus 458 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~~t~~~~~~~~i~~~~D~ea~~~llar 537 (769)
+++++++|+|++++++. ....+|||+|++||+.+|+|||||||++++++++ +.++|+++|+||++++|+|
T Consensus 460 ~~d~s~~v~f~~~~~l~-------~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~---~~~v~~~~Dqea~~~llar 529 (770)
T 3efo_B 460 DCDKAVTVEFKHDDKLS-------EDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQ---LADLYKSCETDALINFFAK 529 (770)
T ss_dssp ESSCCEEEEEEESSCCB-------TTTBEEEEEEEEEECTTCCEEEEEEEEEEEEESC---HHHHHHTBCHHHHHHHHHH
T ss_pred CcCceEEEEEEecCCCC-------CCCcEEEEEEEEEEcCCCCEEEEEEEechhhccc---HHHHHHhcCHHHHHHHHHH
Confidence 99999999999999874 3568999999999999999999999999999984 9999999999999999999
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHHHhcccccCC-----CCccccCccccchHHHHHHHhcccCcCC-CCCChHHHHH
Q 004199 538 LVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDS-----PSSFSLSPRFSIFPQFMFHLRRSQFVQV-FNNSPDETAY 611 (769)
Q Consensus 538 ~a~~~~~~~~~~d~~~~l~~~l~~~~~~~~~y~~~~-----~~~l~lp~~l~~lP~~~~~L~ks~~l~~-~~~s~Der~~ 611 (769)
+|+.++.+++..++|+.|.+.++++ |+.|||++ +++|+||++||+||+|||+|+||++|+. ++++||||+|
T Consensus 530 ~av~~~~~~~l~~~r~~L~~~~~~~---l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~ 606 (770)
T 3efo_B 530 SAFKAVLHQPLKVIREILVNQTAHM---LACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERAY 606 (770)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHH---HHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSCSSSSCHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHH---HHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhhcCCCCCCccHHHH
Confidence 9999999988777777666665554 88999875 3569999999999999999999999996 8999999999
Q ss_pred HHHHHccCChhhhhhhccceeEeecC-----CCCCccccccccccccCeEEEEeCCcEEEEEECCCchHHHHccCCCCch
Q 004199 612 FRMILNRENVTNSVVMIQPSLISYSF-----HSGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPE 686 (769)
Q Consensus 612 ~~~~l~~~~~~~~~~~i~P~L~~~~~-----~~~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~~~~~~~~~~~~~ 686 (769)
++++++++++.+++.||||+||++|. +..|++++||.++|.+|||||||+|++++||+|+++++|+.+.+++.++
T Consensus 607 ~~~~l~~~~~~~~l~~iyP~L~~~h~l~~~~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~~ 686 (770)
T 3efo_B 607 QRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPS 686 (770)
T ss_dssp HHHHHHHCCHHHHHHHHSCEEEECTTCCSSSCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSSS
T ss_pred HHHHHHCCCHHHHHHhhccceEEEeccccccccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCCCc
Confidence 99999999999999999999999984 2468999999999999999999999999999999999987766666766
Q ss_pred hHHHHH-hhhC----------cHHHHHHHHhcCCCCcEEEEEcCCCChHHHHHhhhCCCCcCCCCCCCCCCceeecCCch
Q 004199 687 HQAFAQ-LLQA----------PHDDAGVIMKERFPVPRLVICDQHGSQARFLLAKLNPSATYNSDAQIPGGDIIFTDDVS 755 (769)
Q Consensus 687 ~~~~~~-~l~~----------~~~~~~~l~~~R~~~p~~~~~~~g~s~~r~l~s~L~p~~~~~~~~~~~~~~~~~tdd~S 755 (769)
++.+.. ..++ .++.++.++++|..++++++++||++.+.+|.+.|+||++. .+..|
T Consensus 687 ~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~~~-------------~~~~S 753 (770)
T 3efo_B 687 FAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGL-------------YGGSS 753 (770)
T ss_dssp GGGCCTTCCSCCCCCSSHHHHHHHHHHHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSCC----------------CCC
T ss_pred hhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCccEEEEeCCCChHHHHHHhCcccCCC-------------CCCCC
Confidence 654421 1111 23567888889989999999999998888999999999851 11389
Q ss_pred HHHHHHHHHHHhh
Q 004199 756 FEVFLDHLQRLAV 768 (769)
Q Consensus 756 ~~~f~~~l~~~~~ 768 (769)
|.+|++||||.|.
T Consensus 754 Y~dfL~~lh~~i~ 766 (770)
T 3efo_B 754 YVDFLCCVHKEIC 766 (770)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 5
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=3.8e-132 Score=1172.74 Aligned_cols=671 Identities=20% Similarity=0.308 Sum_probs=589.2
Q ss_pred ccCCCeeeecCCCCCCCHHHhhcCCCceeEEEccCCCCCCCCCCCCCCC---CCCccCCCCCceecCccEEEcCCceEEe
Q 004199 7 LEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILP---YAPLRCRTCRSILNPFSIVDFAAKIWIC 83 (769)
Q Consensus 7 ~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~---~~p~rC~~C~aylNp~~~~~~~~~~w~C 83 (769)
|++|+|||+|||+||.|+++++++++||||+|+||++..++|.++|+++ ++|+||++|||||||||+|+++|++|+|
T Consensus 40 n~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~C 119 (766)
T 3eh2_A 40 NASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQC 119 (766)
T ss_dssp SCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEEC
T ss_pred CCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEEe
Confidence 9999999999999999999999999999999999999887777788875 5899999999999999999999999999
Q ss_pred cCCCCCCCCCcCC-CCCC------CCCCCccccCCCccEEEecCC------CCCCCCCCcEEEEEEEcCcchhH---HHH
Q 004199 84 PFCFQRNHFPPHY-ASIT------DDNLPAELFPQYTTIEYEPPG------PGEKSSVPPVFMFVVDTCIIEEE---MSF 147 (769)
Q Consensus 84 ~~C~~~N~~p~~y-~~~~------~~~~~pEL~~~~~tvey~~~~------~~~~~~~~p~~vFvID~s~~~~~---l~~ 147 (769)
|||+..|++|++| ++++ +.++||||. .++|||.+|. ++| .||+|+||||+|.++++ +++
T Consensus 120 n~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~--~~~vef~a~~eY~~~~~~p---~pp~y~FvIDvs~~av~sg~l~~ 194 (766)
T 3eh2_A 120 CFCSCINDVPPQYFQHLDHTGKRVDAYDRPELS--LGSYEFLATVDYCKNNKFP---SPPAFIFMIDVSYNAIRTGLVRL 194 (766)
T ss_dssp TTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHH--CSEEEEECCGGGSGGGSCC---CCCEEEEEEECSHHHHHTTHHHH
T ss_pred ccccccCCCCHHHhccccccccccccccCcccc--cCceeeecCHhhccCCCCC---CCCEEEEEEECchhhccchHHHH
Confidence 9999999999999 4443 236899998 9999999885 356 89999999999999874 999
Q ss_pred HHHHHHHhcccCCCC-------ceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHHHHHhhcccCCCCCCCcc
Q 004199 148 LKSALSQAIDLLPDN-------SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGV 220 (769)
Q Consensus 148 ~~~~l~~~l~~lp~~-------~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (769)
++++|+++|+.||++ ++|||||||++||||+++ .++++|+|+|+ .|++|+|
T Consensus 195 ~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~-~~~~~~q~~vv--------~dl~d~f------------- 252 (766)
T 3eh2_A 195 LCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVK-SSLAQPQMMVV--------SDVADMF------------- 252 (766)
T ss_dssp HHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECC-TTCSSCEEEEE--------CCTTTCC-------------
T ss_pred HHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECC-CCCCCceEEEe--------cChhhhc-------------
Confidence 999999999999975 899999999999999999 66678999997 3555544
Q ss_pred ccCcCCCCCcccc-ccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecC
Q 004199 221 IAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGG 299 (769)
Q Consensus 221 ~~~~~~~~~~~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggrI~~F~sg 299 (769)
.|+ ++||+|++||++.|.++|++|++ ++.+...+.+|+|+||.+|..+++. .+.||||++|++|
T Consensus 253 ----------~P~~~~~lv~l~e~~~~i~~lL~~L~~---~~~~~~~~~t~~g~al~aa~~~l~~--~~~GGkI~~F~s~ 317 (766)
T 3eh2_A 253 ----------VPLLDGFLVNVNESRAVITSLLDQIPE---MFADTRETETVFVPVIQAGMEALKA--AECAGKLFLFHTS 317 (766)
T ss_dssp ----------CCCCTTSSBCTTTTHHHHHHHHHHHHH---HHTTCCCCCCCSHHHHHHHHHHHHH--TTCCEEEEEEECS
T ss_pred ----------cccccceeEeHHHHHHHHHHHHHhhhh---hccCCCCCcchHHHHHHHHHHHhcc--CCCCcEEEEEecC
Confidence 454 89999999999999999999998 3555566788999999999999984 3689999999999
Q ss_pred CCC-CCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhhhhhhhhccCceE
Q 004199 300 PST-EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLV 378 (769)
Q Consensus 300 ~pt-~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~m~~l~~~TGG~v 378 (769)
+|+ .|||+|+.++.++.+|++ |++ ++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+
T Consensus 318 lP~t~GpG~l~~r~~~~~~~sd----ke~-~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 392 (766)
T 3eh2_A 318 LPIAEAPGKLKNRDDRKLINTD----KEK-TLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSV 392 (766)
T ss_dssp CCCSSSTTCCCCCCCGGGTTST----TGG-GGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred CCCcCCCcccccccccccCCCc----chh-hhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceE
Confidence 655 899999999988888753 443 79999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCchhhHHHHHHHh-hcCccCccceeeeEEEEEecCCceEEeEEcCCcccCCCCCCccccccccCCCCceeEecC
Q 004199 379 VLSDSFGHAVFKDSVRRVF-HSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGL 457 (769)
Q Consensus 379 ~~~~~f~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~~~~~~l~~~ 457 (769)
++|++|+.+.+.+.|.+.| +.. .+++||+|+||||||+|++|++++||++. ++++.|+++++
T Consensus 393 ~~y~~F~~~~d~~~f~~dl~~~l--~~~~gf~a~mrVR~S~glkv~~~~G~~~~---------------~~t~~~~l~~i 455 (766)
T 3eh2_A 393 YKYASFQVENDQERFLSDLRRDV--QKVVGFDAVMRVRTSTGIRAVDFFGAFYM---------------SNTTDVELAGL 455 (766)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHH--HSCEEEEEEEEEEECTTEEEEEEEESCBC---------------SSSSCEEEEEE
T ss_pred EEeCCCcchhHHHHHHHHHHHHh--hhcceeeEEEEEEecCCeEEEEeECCeec---------------CCCCceeeccC
Confidence 9999999887666655555 222 24589999999999999999999999874 46889999999
Q ss_pred CCCceEEEEEEEecCCCCcccccCCCCeEEEEEEEEeEecCCcEEEEEEecccccccCCCCHHHHHhccCHHHHHHHHHH
Q 004199 458 DKATSLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMAR 537 (769)
Q Consensus 458 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~~t~~~~~~~~i~~~~D~ea~~~llar 537 (769)
++|+||+|+|++++++. ....+|||+|++||+.+|+|||||||++++++++ +.++|+++|+||++++|||
T Consensus 456 ~~d~s~~v~f~~~~~l~-------~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~---~~~v~~~~Dqea~~~llar 525 (766)
T 3eh2_A 456 DGDKTVTVEFKHDDRLN-------EESGALLQCALLYTSCAGQRRLRIHNLALNCCTQ---LADLYRNCETDTLINYMAK 525 (766)
T ss_dssp ETTCCEEEEEEESSCCC-------TTTCEEEEEEEEEECTTSCEEEEEEEEEEEEESS---HHHHHHTBCHHHHHHHHHH
T ss_pred CCCceEEEEEEecCCCC-------CCCcEEEEEEEEeEcCCCCEEEEEEEEeeEecCC---HHHHHHhcCHHHHHHHHHH
Confidence 99999999999999874 3678999999999999999999999999999984 9999999999999999999
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHHHhcccccCC-----CCccccCccccchHHHHHHHhcccCcCC-CCCChHHHHH
Q 004199 538 LVSFKMEIEAEFDPIRWLDKALIHMCSRFGDYQKDS-----PSSFSLSPRFSIFPQFMFHLRRSQFVQV-FNNSPDETAY 611 (769)
Q Consensus 538 ~a~~~~~~~~~~d~~~~l~~~l~~~~~~~~~y~~~~-----~~~l~lp~~l~~lP~~~~~L~ks~~l~~-~~~s~Der~~ 611 (769)
+|+.++.+++..++|++|.++++++ |+.|||++ +++|+||++||+||+|||+|+||++|+. ++++||||+|
T Consensus 526 ~av~~~~~~~~~~~R~~l~~~~~~~---l~~Yrk~~~~~~s~~ql~lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~ 602 (766)
T 3eh2_A 526 FAYRGVLNSPVKAVRDTLITQCAQI---LACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAY 602 (766)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHH---HHHHHHHC------CCCCCCGGGTTHHHHHHHHHTSTTTSCCTTCCHHHHHH
T ss_pred HHHHHhhhCCHHHHHHHHHHHHHHH---HHHHHhhccCCCCccceecCHHHHHHHHHHHHHHccHhhcCCCCCCccHHHH
Confidence 9999999999888998888877766 88888874 3569999999999999999999999996 7999999999
Q ss_pred HHHHHccCChhhhhhhccceeEeecC---C--CCCccccccccccccCeEEEEeCCcEEEEEECCCchHH-HHccCCCCc
Q 004199 612 FRMILNRENVTNSVVMIQPSLISYSF---H--SGPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQW-RKAGYHNQP 685 (769)
Q Consensus 612 ~~~~l~~~~~~~~~~~i~P~L~~~~~---~--~~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~~~-~~~~~~~~~ 685 (769)
++++++++++.+++.||||+||++|. + ..|++++||.++|.+|||||||+|++++||+|+++++| +.+.|+ .+
T Consensus 603 ~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFg-v~ 681 (766)
T 3eh2_A 603 VRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFS-VS 681 (766)
T ss_dssp HHHHHHHCCHHHHHHHHSCEEEECSSCCCSCC--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHS-CS
T ss_pred HHHHHHCCCHHHHHHHHhheEEEeecCCcccccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHHHHcC-CC
Confidence 99999999999999999999999984 3 36899999999999999999999999999999999965 555555 44
Q ss_pred hhHHHHH-h-----h-----hCcHHHHHHHHhcCCCCcEEEEEcCCCChHHHHHhhhCCCCcCCCCCCCCCCceeecCCc
Q 004199 686 EHQAFAQ-L-----L-----QAPHDDAGVIMKERFPVPRLVICDQHGSQARFLLAKLNPSATYNSDAQIPGGDIIFTDDV 754 (769)
Q Consensus 686 ~~~~~~~-~-----l-----~~~~~~~~~l~~~R~~~p~~~~~~~g~s~~r~l~s~L~p~~~~~~~~~~~~~~~~~tdd~ 754 (769)
++..+.. . + +..++.++.+++.|..++++++++||++.+.+|.+.|+||++.. + .+
T Consensus 682 ~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~~~~~f~~~LvED~~~~------~-------~~ 748 (766)
T 3eh2_A 682 SFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLS------G-------GA 748 (766)
T ss_dssp SGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSSTHHHHHTTCTTSCCTT------T-------CC
T ss_pred chhhcCcccccCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHHHhCcccCCCC------C-------CC
Confidence 3332211 0 0 11235677888899889999999999888889999999998531 1 38
Q ss_pred hHHHHHHHHHHHhh
Q 004199 755 SFEVFLDHLQRLAV 768 (769)
Q Consensus 755 S~~~f~~~l~~~~~ 768 (769)
||.+|++||||.|.
T Consensus 749 SY~dfL~~lh~~i~ 762 (766)
T 3eh2_A 749 SYVDFLCHMHKEIR 762 (766)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999874
No 6
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=1e-128 Score=1154.45 Aligned_cols=672 Identities=17% Similarity=0.248 Sum_probs=566.5
Q ss_pred cccCCCeeeecCCCCCCCHHHhhcCCCceeEEEccCCCCCCCCCCCCCCCCC-CccCCCCCceecCccEEEcCCceEEec
Q 004199 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA-PLRCRTCRSILNPFSIVDFAAKIWICP 84 (769)
Q Consensus 6 ~~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~~-p~rC~~C~aylNp~~~~~~~~~~w~C~ 84 (769)
-||+++|||+|||+||.+++++++++|||||+|+||++..++++++|+++++ |+||++|+|||||||+|+++|++|+||
T Consensus 175 gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~g~~W~Cn 254 (926)
T 1m2v_B 175 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 254 (926)
T ss_dssp SSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 3899999999999999999999999999999999999877666688998774 999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCCC------CccccCCCccEEEecCC----CCCCCCCCcEEEEEEEcCcchhH---HHHHHHH
Q 004199 85 FCFQRNHFPPHYASITDDNL------PAELFPQYTTIEYEPPG----PGEKSSVPPVFMFVVDTCIIEEE---MSFLKSA 151 (769)
Q Consensus 85 ~C~~~N~~p~~y~~~~~~~~------~pEL~~~~~tvey~~~~----~~~~~~~~p~~vFvID~s~~~~~---l~~~~~~ 151 (769)
||++.|++|.+|. ++..+. ||||. ++||||++|+ ++| .||+|+||||+|.++++ +++++++
T Consensus 255 fC~~~N~~P~~Y~-~~~~~~~~d~~~RpEL~--~~tvEyi~p~ey~~r~p---~ppvyvFvIDvS~~av~~g~l~~l~~s 328 (926)
T 1m2v_B 255 FCRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQP---PPATYCFLIDVSQSSIKSGLLATTINT 328 (926)
T ss_dssp TTCCEEECCGGGT-TTSTTCGGGGGGSHHHH--CSEEEEECCGGGCSSCC---CCCBEEEEEECSHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCchhhc-cccccCccccccCcccc--CceEEEEcChhhccCCC---CCcEEEEEEECCHHHHhhhHHHHHHHH
Confidence 9999999999997 555554 49998 9999999996 446 89999999999999877 8899999
Q ss_pred HHHhcccCCC---CceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHHHHHhhcccCCCCCCCccccCcCCCC
Q 004199 152 LSQAIDLLPD---NSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGL 228 (769)
Q Consensus 152 l~~~l~~lp~---~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (769)
|+++|+.||+ +++|||||||+.||||+++ .+.. |+++ +.++ .+++.+++ .+++
T Consensus 329 I~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~-~~~~--------g~k~-~~~q-~qmlvvsd-l~d~------------ 384 (926)
T 1m2v_B 329 LLQNLDSIPNHDERTRISILCVDNAIHYFKIP-LDSE--------NNEE-SADQ-INMMDIAD-LEEP------------ 384 (926)
T ss_dssp HHHTTTTSCCTTSCCEECEEEESSSEEEEECC-CC------------------C-CEEEEECC-CSSC------------
T ss_pred HHHHHHhCCCCCCCcEEEEEEECCEEEEEecC-Cccc--------CCcc-cccc-hhhccccc-cccc------------
Confidence 9999999997 6999999999999999998 5422 2232 2222 22233322 1222
Q ss_pred Ccccc-ccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCcc
Q 004199 229 SSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAA 307 (769)
Q Consensus 229 ~~~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggrI~~F~sg~pt~GpG~ 307 (769)
+.|+ ++||+|++||++.|.++|++|++ ++++++++.||+|+||++|..+|+ ..||||++|++|+||.|||+
T Consensus 385 -f~P~~~~~Lv~l~e~~~~I~~lLe~L~~---~~~~~~~~~~~~G~AL~aA~~lL~----~~GGrI~~F~sg~Pt~GpG~ 456 (926)
T 1m2v_B 385 -FLPRPNSMVVSLKACRQNIETLLTKIPQ---IFQSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTLPNLGIGK 456 (926)
T ss_dssp -CCSCSSSSSEETTTTHHHHHHHHHHHHH---HTSSCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSCCCSSTTC
T ss_pred -cCCCcccccccHHHHHHHHHHHHHhhhh---hhcCCCCCCccHHHHHHHHHHHHH----hhCCEEEEEecCCCCCCCCc
Confidence 1343 89999999999999999999998 678889999999999999999999 58999999999999999999
Q ss_pred cccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhhhhhhhhccCceEEEeCCCCch
Q 004199 308 IVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHA 387 (769)
Q Consensus 308 l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~m~~l~~~TGG~v~~~~~f~~~ 387 (769)
|+.++.+ .|++++|+++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+
T Consensus 457 l~~re~~----~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~ 532 (926)
T 1m2v_B 457 LQRRNES----GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGK 532 (926)
T ss_dssp CCCCCC--------CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTT
T ss_pred ccccccc----cccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcch
Confidence 9999765 477888887669999999999999999999999999999999999999999999999999999999987
Q ss_pred hhH------HHHHHHhhcCccCccceeeeEEEEEecCCceEEeEEcCCcccCCCCCCccccccccCCCCceeEecCCCCc
Q 004199 388 VFK------DSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKAT 461 (769)
Q Consensus 388 ~~~------~~l~~~~~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~~~~~~l~~~~~~~ 461 (769)
+++ .++.+.+. +.+||+|+||||||+||+|++++||++. + +++.|+++++++++
T Consensus 533 ~~~d~~kf~~dl~~~Lt-----~~~gf~a~mrVR~S~glkv~~~~G~~~~---~------------~s~~~~l~~l~~d~ 592 (926)
T 1m2v_B 533 NPNDIVKFSTEFAKHIS-----MDFCMETVMRARGSTGLRMSRFYGHFFN---R------------SSDLCAFSTMPRDQ 592 (926)
T ss_dssp SHHHHHHHHHHHHHHHH-----SCCEEEEEEEEEECTTEEEEEEESSSBC---S------------STTEEEEEEECSSC
T ss_pred hhhHHHHHHHHHHHHhh-----hhhceeEEEEEEeCCCcEEEEeecCccc---c------------CcCceEeeccCCCC
Confidence 544 34444442 3479999999999999999999999985 1 36789999999999
Q ss_pred eEEEEEEEecCCCCcccccCCCCeEEEEEEEEeEecCCcEEEEEEecccccccCCCCHHHHHhccCHHHHHHHHHHHHHH
Q 004199 462 SLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSF 541 (769)
Q Consensus 462 s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~~t~~~~~~~~i~~~~D~ea~~~llar~a~~ 541 (769)
||+|+|++++++. ...+|||||++||+.+|+|||||||++++++++ +.++++++|+||++++|||+++.
T Consensus 593 s~av~f~~~~~l~--------~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~---l~~v~~s~Dqea~~~llar~av~ 661 (926)
T 1m2v_B 593 SYLFEVNVDESIM--------ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTES---LAEVYASADQLAIASFYNSKAVE 661 (926)
T ss_dssp CEEEEEEECSBCC--------SSEEEEEEEEEEEETTTEEEEEEEEEEEEEESC---HHHHHHTBCHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccCCC--------CCcEEEEEEEEEEcCCCCEEEEEEeecccccCC---HHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999752 468999999999999999999999999999984 99999999999999999999999
Q ss_pred HhhcCCchhHHHHHHHHHHHHHHHhcccccCCCC-------ccccCccccchHHHHHHHhcccCcCCCCCCh-HHHHHHH
Q 004199 542 KMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSPS-------SFSLSPRFSIFPQFMFHLRRSQFVQVFNNSP-DETAYFR 613 (769)
Q Consensus 542 ~~~~~~~~d~~~~l~~~l~~~~~~~~~y~~~~~~-------~l~lp~~l~~lP~~~~~L~ks~~l~~~~~s~-Der~~~~ 613 (769)
++++++..|+|+||+++|+++ ++.|||++++ +|+||++||+||+|||+|+||++|+ ++.+| |||+|++
T Consensus 662 ~~~~~~~~d~r~~L~~~li~i---l~~Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~-~~~~p~Dera~~~ 737 (926)
T 1m2v_B 662 KALNSSLDDARVLINKSVQDI---LATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASAL 737 (926)
T ss_dssp HHHHSCSHHHHHHHHHHHHHH---HHHHHHHTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHH---HHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhhC-CCCCCccHHHHHH
Confidence 999999999999999999999 6688887652 5999999999999999999999999 66666 9999999
Q ss_pred HHHccCChhhhhhhccceeEeecCC----C---------------CCccccccccccccCeEEEEeCCcEEEEEECCCch
Q 004199 614 MILNRENVTNSVVMIQPSLISYSFH----S---------------GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (769)
Q Consensus 614 ~~l~~~~~~~~~~~i~P~L~~~~~~----~---------------~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~ 674 (769)
++++++++..++.||||+||++|.. + .|++++||++.|.++|+||||+|..|++|+|.+++
T Consensus 738 ~~l~~~~~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~ 817 (926)
T 1m2v_B 738 NNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAV 817 (926)
T ss_dssp HHHHHSCHHHHHHHHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEECTTCC
T ss_pred HHHHcCCHHHHHHhccCeEEEeccCcccccccccccccccccccccCCcccCcHHHhccCCEEEEECCCEEEEEecCCCC
Confidence 9999999999999999999999862 2 27899999999999999999999999999999999
Q ss_pred -HHHHccCCCCchhHHHHH----h--h-h-----CcHHHHHHHHhcCC--CCcEEEEEcCCCC-------------hH-H
Q 004199 675 -QWRKAGYHNQPEHQAFAQ----L--L-Q-----APHDDAGVIMKERF--PVPRLVICDQHGS-------------QA-R 725 (769)
Q Consensus 675 -~~~~~~~~~~~~~~~~~~----~--l-~-----~~~~~~~~l~~~R~--~~p~~~~~~~g~s-------------~~-r 725 (769)
+|+.+.|+.+ .+..+.. + + + ..++.++++++.|. .+|+++++++++. .. -
T Consensus 818 p~ll~dlFg~~-~~~~i~~~~~~lp~l~~~~~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~ 896 (926)
T 1m2v_B 818 PALVFDVFGTQ-DIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRL 896 (926)
T ss_dssp SGGGC--------------------------CHHHHHHHHHHTTCCSSCCCCCEEEEEC------------CCHHHHHHH
T ss_pred HHHHHHHhCCC-chhhcCcccccCccCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHH
Confidence 5777777643 2222211 1 1 1 12345567777775 5788898876533 12 3
Q ss_pred HHHhhhCCCCcCCCCCCCCCCceeecCCchHHHHHHHHHHHhhC
Q 004199 726 FLLAKLNPSATYNSDAQIPGGDIIFTDDVSFEVFLDHLQRLAVQ 769 (769)
Q Consensus 726 ~l~s~L~p~~~~~~~~~~~~~~~~~tdd~S~~~f~~~l~~~~~~ 769 (769)
+|.+.|+||+.. +..||.+|++||||.|-+
T Consensus 897 ~f~~~LvED~~~--------------~~~SY~dfL~~lh~~i~~ 926 (926)
T 1m2v_B 897 WASSTLVEDKIL--------------NNESYREFLQIMKARISK 926 (926)
T ss_dssp HHHHTCTTSSCT--------------TCCCHHHHHHHHHHHHCC
T ss_pred HHHHhCeecCCC--------------CCCCHHHHHHHHHHHhhC
Confidence 677899999852 148999999999999853
No 7
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=2.1e-128 Score=1148.61 Aligned_cols=672 Identities=17% Similarity=0.243 Sum_probs=558.3
Q ss_pred cccCCCeeeecCCCCCCCHHHhhcCCCceeEEEccCCCCCCCCCCCCCCCCC-CccCCCCCceecCccEEEcCCceEEec
Q 004199 6 DLEAQDGVRMPWNVIPGTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYA-PLRCRTCRSILNPFSIVDFAAKIWICP 84 (769)
Q Consensus 6 ~~~~~~~vR~t~~~~P~t~~~~~~~~lPlg~~v~P~~~~~~~~~~vp~~~~~-p~rC~~C~aylNp~~~~~~~~~~w~C~ 84 (769)
-||+++|||+|||+||.+++++++++|||||+|+||++..++++++|+++++ |+||++|+|||||||+|+++|++|+||
T Consensus 59 ~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~~~g~~W~C~ 138 (810)
T 1pcx_A 59 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCN 138 (810)
T ss_dssp GSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEETTTTEEECT
T ss_pred CCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEcc
Confidence 4899999999999999999999999999999999999877666688988774 999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCCC------CccccCCCccEEEecCC----CCCCCCCCcEEEEEEEcCcchhH---HHHHHHH
Q 004199 85 FCFQRNHFPPHYASITDDNL------PAELFPQYTTIEYEPPG----PGEKSSVPPVFMFVVDTCIIEEE---MSFLKSA 151 (769)
Q Consensus 85 ~C~~~N~~p~~y~~~~~~~~------~pEL~~~~~tvey~~~~----~~~~~~~~p~~vFvID~s~~~~~---l~~~~~~ 151 (769)
||++.|++|.+|. ++..+. ||||. ++||||++|+ ++| .||+|+||||+|.++++ +++++++
T Consensus 139 ~C~~~N~~P~~y~-~~~~~~~~d~~~RpEL~--~~tvEy~~p~~y~~~~p---~pp~yvFvIDvs~~av~~g~l~~~~~s 212 (810)
T 1pcx_A 139 FCRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQP---PPATYCFLIDVSQSSIKSGLLATTINT 212 (810)
T ss_dssp TTCCEEECCGGGG-C-----CCCGGGSHHHH--CSEEEEECCGGGCSSCC---CCCEEEEEEECSHHHHHHTHHHHHHHH
T ss_pred CCCCcCCCchhhc-cccccCccccccCcccc--CceEEEEcCchhccCCC---CCcEEEEEEECChHHHhhhHHHHHHHH
Confidence 9999999999996 444444 49997 9999999996 346 89999999999999876 7899999
Q ss_pred HHHhcccCCC---CceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHHHHHhhcccCCCCCCCccccCcCCCC
Q 004199 152 LSQAIDLLPD---NSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGL 228 (769)
Q Consensus 152 l~~~l~~lp~---~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (769)
|+++|+.||+ +++|||||||+.||||+++ .+.. |++++ .++ .+++++++ .++|
T Consensus 213 i~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~-~~~~--------g~k~~-~~q-~~mlvv~d-l~d~------------ 268 (810)
T 1pcx_A 213 LLQNLDSIPNHDERTRISILCVDNAIHYFKIP-LDSE--------NNEES-ADQ-INMMDIAD-LEEP------------ 268 (810)
T ss_dssp HHHHTTTSCCTTSCCEEEEEEESSSEEEEECC-CGGG--------C---------CEEECCCC-TTCC------------
T ss_pred HHHHHHhCCCCCCCcEEEEEEECCEEEEEecC-cccc--------Ccccc-ccc-hhhccccc-cccc------------
Confidence 9999999997 6999999999999999998 5422 33332 122 23333333 2223
Q ss_pred Ccccc-ccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCCCcc
Q 004199 229 SSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPAA 307 (769)
Q Consensus 229 ~~~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~ggrI~~F~sg~pt~GpG~ 307 (769)
+.|+ ++||+|++||++.|.++|++|++ ++++++++.||+|+||++|..+|+ ..||||++|++|+||.|||+
T Consensus 269 -f~P~~~~~Lv~l~e~~~~i~~lL~~L~~---~~~~~~~~~~a~G~AL~~A~~lL~----~~GGrI~~F~sg~pt~GpG~ 340 (810)
T 1pcx_A 269 -FLPRPNSMVVSLKACRQNIETLLTKIPQ---IFQSNLITNFALGPALKSAYHLIG----GVGGKIIVVSGTLPNLGIGK 340 (810)
T ss_dssp ------TTTSEETTTTHHHHHHHHHHHHH---HTTTCCCCCCCHHHHHHHHHHHHT----TTCEEEEEEESSCCCSSTTC
T ss_pred -cCCCcccccccHHHHHHHHHHHHHhhhh---hccCCCCCCccHHHHHHHHHHHHH----hcCCEEEEEecCCCCCCCCc
Confidence 1343 89999999999999999999998 678889999999999999999999 58999999999999999999
Q ss_pred cccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCccChhhhhhhhhccCceEEEeCCCCch
Q 004199 308 IVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQVGVAELKVAVEKTGGLVVLSDSFGHA 387 (769)
Q Consensus 308 l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~~l~~m~~l~~~TGG~v~~~~~f~~~ 387 (769)
|+.++.+ .|++++|+++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+
T Consensus 341 l~~r~~~----~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~ 416 (810)
T 1pcx_A 341 LQRRNES----GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGK 416 (810)
T ss_dssp CCC------------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTT
T ss_pred ccccccc----cccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcch
Confidence 9999765 477899988779999999999999999999999999999999999999999999999999999999987
Q ss_pred hhH------HHHHHHhhcCccCccceeeeEEEEEecCCceEEeEEcCCcccCCCCCCccccccccCCCCceeEecCCCCc
Q 004199 388 VFK------DSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDAVVGQGNTSAWKMCGLDKAT 461 (769)
Q Consensus 388 ~~~------~~l~~~~~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~~~~~~l~~~~~~~ 461 (769)
+++ .++.+.+. +++||+|+||||||+|++|++++||++.. +++.|+++++++++
T Consensus 417 ~~~d~~~f~~dl~~~l~-----~~~gf~a~mrVR~S~gl~v~~~~G~~~~~---------------~~~~~~l~~~~~d~ 476 (810)
T 1pcx_A 417 NPNDIVKFSTEFAKHIS-----MDFCMETVMRARGSTGLRMSRFYGHFFNR---------------SSDLCAFSTMPRDQ 476 (810)
T ss_dssp SHHHHHHHHHHHHHHHH-----CCCCEEEEEEEEECTTEEEEEEESSSBCS---------------SSSEEEESSCCSSC
T ss_pred hhHHHHHHHHHHHHHhh-----hhcceeEEEEEEcCCCeEEEEeecCcccc---------------CcCceEeecCCCCC
Confidence 543 34444442 34799999999999999999999999861 36789999999999
Q ss_pred eEEEEEEEecCCCCcccccCCCCeEEEEEEEEeEecCCcEEEEEEecccccccCCCCHHHHHhccCHHHHHHHHHHHHHH
Q 004199 462 SLCLVFEIVKKEIPDATLQSTNNQFYFQFLTYYQHNCGQMRLRVTTLSRRWVAGPGSVQDLIAGFDQEAAAVVMARLVSF 541 (769)
Q Consensus 462 s~~~~~~~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~~~~t~~~~~~~~i~~~~D~ea~~~llar~a~~ 541 (769)
||+|+|++++++. ...+|||+|++||+.+|+|||||||++++++++ +.++++++|+||++++|||+|+.
T Consensus 477 s~~v~f~~~~~l~--------~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~---~~~v~~~~Dqea~~~llar~av~ 545 (810)
T 1pcx_A 477 SYLFEVNVDESIM--------ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTES---LAEVYASADQLAIASFYNSKAVE 545 (810)
T ss_dssp CEEEEEEECSCCC--------SSEEEEEEEEEEECTTSCEEEEEEEEEEEEESC---HHHHHHTBCHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccCCC--------CCcEEEEEEEEEEcCCCCEEEEEEecCccccCC---HHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999752 468999999999999999999999999999984 99999999999999999999999
Q ss_pred HhhcCCchhHHHHHHHHHHHHHHHhcccccCCC-------CccccCccccchHHHHHHHhcccCcCCCCCCh-HHHHHHH
Q 004199 542 KMEIEAEFDPIRWLDKALIHMCSRFGDYQKDSP-------SSFSLSPRFSIFPQFMFHLRRSQFVQVFNNSP-DETAYFR 613 (769)
Q Consensus 542 ~~~~~~~~d~~~~l~~~l~~~~~~~~~y~~~~~-------~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~s~-Der~~~~ 613 (769)
++++++..|+|+||+++|+++ ++.|||+++ ++|+||++||+||+|||+|+||++|+ ++.+| |||+|++
T Consensus 546 ~~~~~~~~d~r~~l~~~li~i---l~~Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~~l~-~~~~p~Der~~~~ 621 (810)
T 1pcx_A 546 KALNSSLDDARVLINKSVQDI---LATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASAL 621 (810)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH---HHHHHHHCC----CCSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHH---HHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhcC-CCCCCccHHHHHH
Confidence 999999999999999999999 668888765 26999999999999999999999999 66666 9999999
Q ss_pred HHHccCChhhhhhhccceeEeecCC----C---------------CCccccccccccccCeEEEEeCCcEEEEEECCCch
Q 004199 614 MILNRENVTNSVVMIQPSLISYSFH----S---------------GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (769)
Q Consensus 614 ~~l~~~~~~~~~~~i~P~L~~~~~~----~---------------~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~ 674 (769)
++++++++..++.||||+||++|.. + .|++++||.+.|.++|+||||+|..+++|+|.+++
T Consensus 622 ~~l~~~~~~~~~~~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~ 701 (810)
T 1pcx_A 622 NNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAV 701 (810)
T ss_dssp HHHHHSCHHHHHHHHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECSSEEEEEECTTCC
T ss_pred HHHHcCCHHHHHHhccCEEEEeccCcccccccccccccccccccccCCcccCCHHHhCcCCEEEEECCCEEEEEeCCCCC
Confidence 9999999999999999999999862 2 27899999999999999999999999999999999
Q ss_pred -HHHHccCCCCchhHHHH------------HhhhCcHHHHHHHHhcCC--CCcEEEEEcCCCC--------------hHH
Q 004199 675 -QWRKAGYHNQPEHQAFA------------QLLQAPHDDAGVIMKERF--PVPRLVICDQHGS--------------QAR 725 (769)
Q Consensus 675 -~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~l~~~R~--~~p~~~~~~~g~s--------------~~r 725 (769)
+|+.+.|+.+. +..+. .+=+..++.++++++.|. .+|++++++||+. .+-
T Consensus 702 ~~l~~~lFg~~~-~~~~~~~~~~lp~~~~~~~~~~l~~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~ 780 (810)
T 1pcx_A 702 PALVFDVFGTQD-IFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRL 780 (810)
T ss_dssp HHHHHHHHSCSC-GGGSCCEECCCCCCSSCHHHHHHHHHHHHHHCCSSCCCCCEEEEEECCCTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc-hhhcCcccccCCcCCCChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHH
Confidence 58887776432 11110 000112356678888885 5788999987643 123
Q ss_pred HHHhhhCCCCcCCCCCCCCCCceeecCCchHHHHHHHHHHHhhC
Q 004199 726 FLLAKLNPSATYNSDAQIPGGDIIFTDDVSFEVFLDHLQRLAVQ 769 (769)
Q Consensus 726 ~l~s~L~p~~~~~~~~~~~~~~~~~tdd~S~~~f~~~l~~~~~~ 769 (769)
+|.+.|+||+.. +..||.+|++||||.|-+
T Consensus 781 ~f~~~LvED~~~--------------~~~SY~~fL~~lh~~i~~ 810 (810)
T 1pcx_A 781 WASSTLVEDKIL--------------NNESYREFLQIMKARISK 810 (810)
T ss_dssp HHHTTCTTSCBT--------------TBCCHHHHHHHHHHHTCC
T ss_pred HHHHhCeecCCC--------------CCCCHHHHHHHHHHHhhC
Confidence 677899999852 148999999999998854
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.64 E-value=2.9e-17 Score=127.37 Aligned_cols=52 Identities=50% Similarity=1.128 Sum_probs=47.7
Q ss_pred CCCCCccCCC--CCceecCccEEEcCCceEEecCCCCCCCCCcCCCCCCCCCCC
Q 004199 54 LPYAPLRCRT--CRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLP 105 (769)
Q Consensus 54 ~~~~p~rC~~--C~aylNp~~~~~~~~~~w~C~~C~~~N~~p~~y~~~~~~~~~ 105 (769)
.+++|+||++ |+||||||++|+.++++|+|+||++.|++|.+|..++++|+|
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~nlP 58 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP 58 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHHSC
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCcccCC
Confidence 4678999999 999999999999999999999999999999999877776665
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.17 E-value=8e-08 Score=107.75 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=178.2
Q ss_pred CCcEEEEEEEcCcchh----HHHHHHHHHHHhcccCCCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHH
Q 004199 128 VPPVFMFVVDTCIIEE----EMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~----~l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (769)
.+.-++||||+|.++. .++.+++++...++.|+++.+||||+|++..+.+--. ..
T Consensus 76 ~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~-t~-------------------- 134 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPT-GG-------------------- 134 (464)
T ss_dssp CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESS-SS--------------------
T ss_pred CCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecC-Cc--------------------
Confidence 3456999999999876 3899999999999999999999999999887654211 00
Q ss_pred HHHhhcccCCCCCCCccccCcCCCCCccccccceeec-hhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHh
Q 004199 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPA-FDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (769)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~-~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll 282 (769)
.+.+. ...+..+...|+.|.. ...+.++.||..|..++
T Consensus 135 --------------------------------~l~~~~~~~~~~l~~~I~~L~~---------~GgT~l~~aL~~A~~~l 173 (464)
T 4fx5_A 135 --------------------------------QLLRADYQSRAAAKEAVGRLHA---------NGGTAMGRWLAQAGRIF 173 (464)
T ss_dssp --------------------------------SCEECSHHHHHHHHHHHHTCCC---------CSCCCHHHHHHHHHHHH
T ss_pred --------------------------------ccccCCHHHHHHHHHHHHcCCC---------CCCCcHHHHHHHHHHHH
Confidence 00011 1124455666667654 22468999999999999
Q ss_pred hccCCCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCcc
Q 004199 283 GACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQV 362 (769)
Q Consensus 283 ~~~~~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~~ 362 (769)
.. .++....|++++.|.++.+. ...... +.++...++.|..+.++ ...
T Consensus 174 ~~-~~~~~~~IILLTDG~~~~~~----------------------------~~~l~~--~~~a~~~~i~i~tiGiG-~~~ 221 (464)
T 4fx5_A 174 DT-APSAIKHAILLTDGKDESET----------------------------PADLAR--AIQSSIGNFTADCRGIG-EDW 221 (464)
T ss_dssp TT-CTTSEEEEEEEESSCCTTSC----------------------------HHHHHH--HHHHHTTTCEEEEEEES-SSS
T ss_pred hc-CCCCCCEEEEEcCCCCCCCC----------------------------hHHHHH--HHHHhcCCCeEEEEEeC-Ccc
Confidence 84 22334678999999765421 001111 22344578888888775 456
Q ss_pred ChhhhhhhhhccCceEEEeCCCCchhhHHHHHHHhhcCccCccceeeeEEEEEecCCceEEeEEc--CCcccCCCCCCcc
Q 004199 363 GVAELKVAVEKTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINCSKDIKVQGIIG--PCASLEKKGPLCS 440 (769)
Q Consensus 363 ~l~~m~~l~~~TGG~v~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~l~vr~S~gl~v~~~~G--~~~~~~~~~~~vs 440 (769)
+-..|..++..|||..++.++.. .+.+.+.+++.... ....-++.+++++.+|+.+..+.. +.... +.
T Consensus 222 d~~~L~~IA~~tgG~~~~v~d~~--~L~~~f~~i~~~~~--s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~------l~ 291 (464)
T 4fx5_A 222 EPKELRKIADALLGTVGIIRDPA--TLAEDFREMTAKSM--GKEVADVALRLWAPKGATIRYVKQVSPNLAD------LS 291 (464)
T ss_dssp CHHHHHHHHHHTTCCEEEESSGG--GHHHHHHHHHHHHH--TCCEEEEEEEEECCTTCEEEEEEEEESBCEE------CG
T ss_pred CHHHHHHHHHhCCCEEEEcCCHH--HHHHHHHHHHHHhh--chheeeeEEEEEeCCCcEEEEEEeecccccc------cC
Confidence 78899999999999999887664 34455555552211 235789999999999998876532 11110 00
Q ss_pred ccccc--cCCCCceeEecCCCCceEEEEEEEecCCCCcccccCCCCeEE-EEEEEEeEecCCcEEEEEEeccccccc
Q 004199 441 DAVVG--QGNTSAWKMCGLDKATSLCLVFEIVKKEIPDATLQSTNNQFY-FQFLTYYQHNCGQMRLRVTTLSRRWVA 514 (769)
Q Consensus 441 d~~~g--~~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-iQ~al~Yt~~~G~rriRV~T~~~~~t~ 514 (769)
....+ .+....+.++.+ .+.+=.|.+++.-... ..+...- .+..+.|.++.|++.+.=..+...++.
T Consensus 292 ~~~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~------~~g~~~~~~~v~~~y~~~~~~~~~~~~~v~~~~~~ 361 (464)
T 4fx5_A 292 GMRVPGDNPLTGDYPTGAW-GAESREYHICVEVEPG------NIGQEKLAGRVQLVAKDAGGATLLGEGKIRAVWTE 361 (464)
T ss_dssp GGCEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCC------CTTCEEEEEEEEEEEEETTEEEEEEEEEEEEEECS
T ss_pred cccccCCCCcEEEEECCcC-CCCeEEEEEEEEcCCC------CCCceeEEEEEEEEEcCCCccccccccceEEEEEc
Confidence 00011 123556889999 8877777777775432 2244443 799999999888732222233444443
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=2.7e-06 Score=85.17 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=114.1
Q ss_pred CCcEEEEEEEcCcchh-------HHHHHHHHHHHhcccCCCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCH
Q 004199 128 VPPVFMFVVDTCIIEE-------EMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSK 200 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~-------~l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~ 200 (769)
.+.-++||||+|.+.. .++.+++.+...++.++ +.+||||+|++..++.-
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~---------------------- 66 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQL---------------------- 66 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEE----------------------
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeC----------------------
Confidence 5678999999999865 58999999999999997 67999999997654321
Q ss_pred HHHHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHH
Q 004199 201 DQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS 280 (769)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ 280 (769)
| +......+..+|+.|.... . ....+.++.||..|..
T Consensus 67 -------------------------------~-------~~~~~~~~~~~l~~l~~~~--~---~~g~T~l~~al~~a~~ 103 (218)
T 3ibs_A 67 -------------------------------P-------ITSDYISAKMFLESISPSL--I---SKQGTAIGEAINLATR 103 (218)
T ss_dssp -------------------------------E-------EESCHHHHHHHHHTCCGGG--C---CSCSCCHHHHHHHHHT
T ss_pred -------------------------------C-------CCCCHHHHHHHHHhcCccc--C---CCCCCcHHHHHHHHHH
Confidence 0 0001234455666665421 1 1235789999999999
Q ss_pred HhhccCCCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 004199 281 LLGACVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (769)
Q Consensus 281 ll~~~~~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~ 360 (769)
++... +.....|++++.|.++.| + ..+.+..+...||.|..+.++.+
T Consensus 104 ~l~~~-~~~~~~ivllTDG~~~~~-------~-------------------------~~~~~~~~~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 104 SFTPQ-EGVGRAIIVITDGENHEG-------G-------------------------AVEAAKAAAEKGIQVSVLGVGMP 150 (218)
T ss_dssp TSCSC-SSCCEEEEEEECCTTCCS-------C-------------------------HHHHHHHHHTTTEEEEEEEESCT
T ss_pred HHhhC-CCCCcEEEEEcCCCCCCC-------c-------------------------HHHHHHHHHhcCCEEEEEEecCC
Confidence 88742 234568888899876544 0 23456777888999998888763
Q ss_pred ------------------------ccChhhhhhhhhccCceEEEeCC
Q 004199 361 ------------------------QVGVAELKVAVEKTGGLVVLSDS 383 (769)
Q Consensus 361 ------------------------~~~l~~m~~l~~~TGG~v~~~~~ 383 (769)
..+-..|..+|..|||..++..+
T Consensus 151 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 151 EGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp TCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred CCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCC
Confidence 56778899999999999988875
No 11
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=7.9e-06 Score=84.03 Aligned_cols=147 Identities=18% Similarity=0.109 Sum_probs=103.8
Q ss_pred EEEEEEEcCcchh-------HHHHHHHHHHHhccc---CCCCceEEEEEECC-eEEEEEccCCCCCCCeeEEecCCccCC
Q 004199 131 VFMFVVDTCIIEE-------EMSFLKSALSQAIDL---LPDNSLVGLITFGT-LVQVHELGGFGQIIPKTYVFKGSKDVS 199 (769)
Q Consensus 131 ~~vFvID~s~~~~-------~l~~~~~~l~~~l~~---lp~~~~VglITfd~-~V~~~~l~~~~~~~~~~~v~~g~~~~~ 199 (769)
..|||||+|.++. .+++.++++...++. ..+..+||||+|.. ...+.
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl---------------------- 62 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL---------------------- 62 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec----------------------
Confidence 5699999999874 378888887777664 45677999999953 22221
Q ss_pred HHHHHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHH
Q 004199 200 KDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA 279 (769)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~ 279 (769)
.|+......+...|+.|+.. ..+.++.||..|.
T Consensus 63 --------------------------------------~plT~D~~~il~aL~~l~~~---------G~T~l~~gL~~A~ 95 (268)
T 4b4t_W 63 --------------------------------------STFTAEFGKILAGLHDTQIE---------GKLHMATALQIAQ 95 (268)
T ss_dssp --------------------------------------EEEESCHHHHHHHHTTCCCC---------SCCCHHHHHHHHH
T ss_pred --------------------------------------cCCcchHHHHHHHhhhcCcC---------CCCChHHHHHHHH
Confidence 11111234666777777652 3568999999999
Q ss_pred HHhhccCCC-CCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEec
Q 004199 280 SLLGACVPG-SGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (769)
Q Consensus 280 ~ll~~~~~~-~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~ 358 (769)
..|+..... ..-||++|++|+-+. ..+-..++++++.+++|.||++.++
T Consensus 96 ~aLk~~~~k~~~~rIIlf~ds~~~~------------------------------~~~~l~~lak~lkk~gI~v~vIgFG 145 (268)
T 4b4t_W 96 LTLKHRQNKVQHQRIVAFVCSPISD------------------------------SRDELIRLAKTLKKNNVAVDIINFG 145 (268)
T ss_dssp HHHHTCSCTTSEEEEEEEECSCCSS------------------------------CHHHHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHhcccCCCceEEEEEECCCCCC------------------------------CHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 999854332 335899999985321 1223568899999999999999999
Q ss_pred CCccChhhhhhhhhccCc
Q 004199 359 LDQVGVAELKVAVEKTGG 376 (769)
Q Consensus 359 ~~~~~l~~m~~l~~~TGG 376 (769)
.+.-+-..|..+++..+|
T Consensus 146 ~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 146 EIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp SCCSSCCHHHHHHHHHCS
T ss_pred CCccchHHHHHHHHHhcC
Confidence 876777788888877665
No 12
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.17 E-value=8.2e-05 Score=73.60 Aligned_cols=163 Identities=9% Similarity=0.066 Sum_probs=107.0
Q ss_pred CCcEEEEEEEcCcchh--HHHHHHHHHHHhcccCC---CCceEEEEEECCeEEEE-EccCCCCCCCeeEEecCCccCCHH
Q 004199 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~~-~l~~~~~~~~~~~v~~g~~~~~~~ 201 (769)
.+.-.+||||.|.+.. .++.+++.++..++.++ ++.+||+|+|++..+.. .+. .
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~-~------------------- 71 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLK-D------------------- 71 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTT-C-------------------
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecC-C-------------------
Confidence 4567999999999854 48899999999998886 56899999999876542 111 0
Q ss_pred HHHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHH-H
Q 004199 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-S 280 (769)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~-~ 280 (769)
+ . .+..+...|++|+.. ....+.+|.||..|. .
T Consensus 72 ----------------------------------~----~-~~~~~~~~i~~l~~~-------gg~~T~~~~aL~~a~~~ 105 (202)
T 1ijb_A 72 ----------------------------------R----K-RPSELRRIASQVKYA-------GSQVASTSEVLKYTLFQ 105 (202)
T ss_dssp ----------------------------------C----C-CHHHHHHHHHTCCCC-------CBSCCCHHHHHHHHHHH
T ss_pred ----------------------------------C----C-CHHHHHHHHHhCcCC-------CCCcCcHHHHHHHHHHH
Confidence 0 0 123455566666541 112478999999997 4
Q ss_pred HhhccCC-CCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecC
Q 004199 281 LLGACVP-GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (769)
Q Consensus 281 ll~~~~~-~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~ 359 (769)
++....+ +..-.|++++.|.++.|. . + -..+.+..+.+.||.|-.+..+
T Consensus 106 ~~~~~~r~~~~~~iillTDG~~~~~~-----~--------------~----------~~~~~a~~l~~~gi~i~~igvG- 155 (202)
T 1ijb_A 106 IFSKIDRPEASRIALLLMASQEPQRM-----S--------------R----------NFVRYVQGLKKKKVIVIPVGIG- 155 (202)
T ss_dssp TSSSCSCTTSEEEEEEEECCCCCGGG-----C--------------T----------THHHHHHHHHHTTEEEEEEEES-
T ss_pred HhccCCCCCCCeEEEEEccCCCCccc-----h--------------H----------HHHHHHHHHHHCCCEEEEEecC-
Confidence 4442111 223457888888764320 0 0 0224456667778766655554
Q ss_pred CccChhhhhhhhhc-cCceEEEeCCCCc
Q 004199 360 DQVGVAELKVAVEK-TGGLVVLSDSFGH 386 (769)
Q Consensus 360 ~~~~l~~m~~l~~~-TGG~v~~~~~f~~ 386 (769)
+..+..+|..++.. +||.+|..++|+.
T Consensus 156 ~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 183 (202)
T 1ijb_A 156 PHANLKQIRLIEKQAPENKAFVLSSVDE 183 (202)
T ss_dssp TTSCHHHHHHHHHHCTTCCCEEESSGGG
T ss_pred CcCCHHHHHHHhCCCCcccEEEeCCHHH
Confidence 35788899999985 6889999887764
No 13
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.16 E-value=5.4e-05 Score=75.76 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=105.7
Q ss_pred CCcEEEEEEEcCcchhH--HHHHHHHHHHhcccC---CCCceEEEEEECCeEEEEE-ccCCCCCCCeeEEecCCccCCHH
Q 004199 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKD 201 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~--l~~~~~~l~~~l~~l---p~~~~VglITfd~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~ 201 (769)
.+.-++||||+|.+... ++.+++.+...++.+ +++.+||+|+|++.++..- +.
T Consensus 14 ~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~--------------------- 72 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS--------------------- 72 (223)
T ss_dssp -CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTT---------------------
T ss_pred CceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccc---------------------
Confidence 56789999999998643 788888888776554 5578999999998775421 11
Q ss_pred HHHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHH
Q 004199 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (769)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~l 281 (769)
.| .......+...|+.|.... ......+.+|.||..|...
T Consensus 73 -----------------------------~~-------~~~~~~~~~~~i~~l~~~~----~~~~g~T~~~~aL~~a~~~ 112 (223)
T 1q0p_A 73 -----------------------------EA-------DSSNADWVTKQLNEINYED----HKLKSGTNTKKALQAVYSM 112 (223)
T ss_dssp -----------------------------SG-------GGGCHHHHHHHHHTCCTTS----CSCTTCCCHHHHHHHHHHH
T ss_pred -----------------------------cC-------CCCCHHHHHHHHHhccccc----ccCCCCccHHHHHHHHHHH
Confidence 00 0111345566777776520 0123467899999999999
Q ss_pred hhccCC-------CCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHH------HHHHHhc
Q 004199 282 LGACVP-------GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDAL------SKQLVHQ 348 (769)
Q Consensus 282 l~~~~~-------~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~l------a~~~~~~ 348 (769)
|..... +....|++++.|.++.|.-. ....+-.+++ +..+.+.
T Consensus 113 l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~ 168 (223)
T 1q0p_A 113 MSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDP------------------------ITVIDEIRDLLYIGKDRKNPRED 168 (223)
T ss_dssp HCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCT------------------------HHHHHHHHHHTTCSCBTTBCCGG
T ss_pred hhccccccccccccCCeEEEEECCCCCCCCCCh------------------------HHHHHHHHHHHhhhhhhhhcccC
Confidence 873111 12235888999988776300 0000001111 0122334
Q ss_pred CcEEEEEEecCCccChhhhhhhhhccCc--eEEEeCCCC
Q 004199 349 GHVLDLFACALDQVGVAELKVAVEKTGG--LVVLSDSFG 385 (769)
Q Consensus 349 ~isvDlf~~~~~~~~l~~m~~l~~~TGG--~v~~~~~f~ 385 (769)
+|.|..+..+ ..++..+|..++..||| .++..+++.
T Consensus 169 ~i~i~~igvG-~~~~~~~L~~iA~~~~G~~~~~~~~~~~ 206 (223)
T 1q0p_A 169 YLDVYVFGVG-PLVNQVNINALASKKDNEQHVFKVKDME 206 (223)
T ss_dssp GEEEEEEECS-SCCCHHHHHHHSCCCTTCCCEEETTC--
T ss_pred CcEEEEEEec-CcCCHHHHHHHhcCCCCCceEEEcCCHH
Confidence 5655555543 35788899999999999 787776654
No 14
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.13 E-value=6.8e-05 Score=75.38 Aligned_cols=161 Identities=11% Similarity=0.041 Sum_probs=107.1
Q ss_pred CCcEEEEEEEcCcchhHHHHHHHHHHHhcccCC---CCceEEEEEECCeEEEEE-ccCCCCCCCeeEEecCCccCCHHHH
Q 004199 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQL 203 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~~l 203 (769)
.+.-.+||||+|.+...++.+++.+...++.+. ++.+||+|+|++.++..- +. .
T Consensus 21 ~~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~-~--------------------- 78 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN-K--------------------- 78 (223)
T ss_dssp -CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTT-T---------------------
T ss_pred CcceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecC-C---------------------
Confidence 456789999999988788899999999988874 689999999998765421 11 0
Q ss_pred HHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHH-h
Q 004199 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL-L 282 (769)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~l-l 282 (769)
+ . ....+...|+.+... ....+.+|.||..|... +
T Consensus 79 --------------------------------~----~-~~~~~~~~i~~l~~~-------gG~~T~~~~aL~~a~~~l~ 114 (223)
T 2b2x_A 79 --------------------------------Y----S-STEEVLVAANKIVQR-------GGRQTMTALGIDTARKEAF 114 (223)
T ss_dssp --------------------------------C----C-SHHHHHHHHTTCCCC-------CCSSCCHHHHHHHHHHTTS
T ss_pred --------------------------------C----C-CHHHHHHHHHhhhcc-------CCCCccHHHHHHHHHHHhc
Confidence 0 0 012233344444321 11246899999999986 3
Q ss_pred hc---cCCCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecC
Q 004199 283 GA---CVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (769)
Q Consensus 283 ~~---~~~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~ 359 (769)
.. ..++....|++++.|.++.|. -..+.+..+.+.||.|..+..+.
T Consensus 115 ~~~~~~~~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~v~~igvG~ 163 (223)
T 2b2x_A 115 TEARGARRGVKKVMVIVTDGESHDNY-------------------------------RLKQVIQDCEDENIQRFSIAILG 163 (223)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCTTGG-------------------------------GHHHHHHHHHTTTEEEEEEEECG
T ss_pred CcccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecC
Confidence 31 111233458888998766441 02345667778888877776654
Q ss_pred CccC---------hhhhhhhhhc-cCceEEEeCCCCc
Q 004199 360 DQVG---------VAELKVAVEK-TGGLVVLSDSFGH 386 (769)
Q Consensus 360 ~~~~---------l~~m~~l~~~-TGG~v~~~~~f~~ 386 (769)
+ .+ ..+|..+|.. |||.++..+++..
T Consensus 164 ~-~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~ 199 (223)
T 2b2x_A 164 H-YNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 199 (223)
T ss_dssp G-GC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTG
T ss_pred c-cccccccchhHHHHHHHHhCCCchhcEEEeCCHHH
Confidence 3 22 4789999998 9999999887754
No 15
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.12 E-value=7.2e-05 Score=73.80 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=107.6
Q ss_pred CCcEEEEEEEcCcchhHHHHHHHHHHHhcccCC---CCceEEEEEECCeEEEE-EccCCCCCCCeeEEecCCccCCHHHH
Q 004199 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKDQL 203 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~~-~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (769)
.+.-.+||||+|.+...++.+++.++..++.+. ++.+||+|+|++..+.. .+. .
T Consensus 5 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~-~--------------------- 62 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLN-T--------------------- 62 (200)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTT-T---------------------
T ss_pred CcccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCC-C---------------------
Confidence 456789999999987778899999999988885 68999999999876542 111 0
Q ss_pred HHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHH-h
Q 004199 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL-L 282 (769)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~l-l 282 (769)
+ ..+..+.+.|+.++.. .+ ..+.+|.||..|... +
T Consensus 63 --------------------------------~-----~~~~~~~~~i~~l~~~-----~G--~~T~~~~al~~a~~~~~ 98 (200)
T 1v7p_C 63 --------------------------------Y-----KTKEEMIVATSQTSQY-----GG--DLTNTFGAIQYARKYAY 98 (200)
T ss_dssp --------------------------------C-----SSHHHHHHHHHHCCCC-----CC--SCCCHHHHHHHHHHHTT
T ss_pred --------------------------------c-----CCHHHHHHHHHhhhcc-----CC--CCCcHHHHHHHHHHhhc
Confidence 0 0122444556666541 11 246899999999985 4
Q ss_pred hcc--C-CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecC
Q 004199 283 GAC--V-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (769)
Q Consensus 283 ~~~--~-~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~ 359 (769)
... . ++....|++++.|.++.+. -..+.+..+.+.||.|..+..+.
T Consensus 99 ~~~~g~r~~~~~~ivllTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 99 SAASGGRRSATKVMVVVTDGESHDGS-------------------------------MLKAVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp SGGGTCCTTSEEEEEEEESSCCSCGG-------------------------------GHHHHHHHHHHTTEEEEEEEECH
T ss_pred ccccCCCCCCCeEEEEEccCCCCCcc-------------------------------cHHHHHHHHHHCCCEEEEEEecc
Confidence 321 1 1223458888998765221 02345677778888877776632
Q ss_pred ----CccC----hhhhhhhhhccCce-EEEeCCCCc
Q 004199 360 ----DQVG----VAELKVAVEKTGGL-VVLSDSFGH 386 (769)
Q Consensus 360 ----~~~~----l~~m~~l~~~TGG~-v~~~~~f~~ 386 (769)
..++ ..+|..+|..|||. ++..+++..
T Consensus 148 ~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 183 (200)
T 1v7p_C 148 YLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAA 183 (200)
T ss_dssp HHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGG
T ss_pred cccccccchhhHHHHHHHHhCCccHhcEEEcCCHHH
Confidence 2344 57899999999885 566777654
No 16
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.06 E-value=0.00021 Score=69.62 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=105.8
Q ss_pred CCcEEEEEEEcCcchh--HHHHHHHHHHHhcccCC---CCceEEEEEECCeEEEE-EccCCCCCCCeeEEecCCccCCHH
Q 004199 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~~-~l~~~~~~~~~~~v~~g~~~~~~~ 201 (769)
.+.-.+||||.|.+.. .++.+++.+...++.++ ++.+||+|+|++.++.. .+. ..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~~------------------ 64 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWN-VV------------------ 64 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT-CC------------------
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecC-CC------------------
Confidence 4667899999999864 38899999998888875 35899999999876542 111 00
Q ss_pred HHHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHH
Q 004199 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (769)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~l 281 (769)
..+..+...++.++.. ...+.+|.||..|...
T Consensus 65 ----------------------------------------~~~~~~~~~i~~l~~~--------~g~T~~~~aL~~a~~~ 96 (189)
T 1atz_A 65 ----------------------------------------PEKAHLLSLVDVMQRE--------GGPSQIGDALGFAVRY 96 (189)
T ss_dssp ----------------------------------------CCHHHHHHHHHTCCCC--------CCCCCHHHHHHHHHHH
T ss_pred ----------------------------------------CCHHHHHHHHHhCcCC--------CCcchHHHHHHHHHHH
Confidence 0123455566666531 2357899999999998
Q ss_pred hhccC---CCCCcE-EEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEe
Q 004199 282 LGACV---PGSGAR-ILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (769)
Q Consensus 282 l~~~~---~~~ggr-I~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~ 357 (769)
+.... +....+ ++++++|.++.. ..+.+..+.+.||.|..+..
T Consensus 97 l~~~~~g~r~~~~~~vivltdg~~~~~---------------------------------~~~~~~~~~~~gi~v~~igv 143 (189)
T 1atz_A 97 LTSEMHGARPGASKAVVILVTDVSVDS---------------------------------VDAAADAARSNRVTVFPIGI 143 (189)
T ss_dssp HHSCCTTCCTTSEEEEEEEECSCCSSC---------------------------------CHHHHHHHHHTTEEEEEEEE
T ss_pred HhccccCCCCCCCcEEEEEeCCCCCch---------------------------------HHHHHHHHHHCCCEEEEEEc
Confidence 86321 111235 677888743210 12456667778887777766
Q ss_pred cCCccChhhhhhhhhccCc-eEEEeCCCCc
Q 004199 358 ALDQVGVAELKVAVEKTGG-LVVLSDSFGH 386 (769)
Q Consensus 358 ~~~~~~l~~m~~l~~~TGG-~v~~~~~f~~ 386 (769)
+. ..+..+|..++..++| .++..++|..
T Consensus 144 G~-~~~~~~L~~iA~~~~~~~~~~~~~~~~ 172 (189)
T 1atz_A 144 GD-RYDAAQLRILAGPAGDSNVVKLQRIED 172 (189)
T ss_dssp SS-SSCHHHHHHHTGGGGGGGCEEESSTTH
T ss_pred CC-cCCHHHHHHHHCCCcccCEEEecChhh
Confidence 53 4678899999999875 5777776653
No 17
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.00 E-value=0.00024 Score=68.53 Aligned_cols=157 Identities=13% Similarity=0.143 Sum_probs=99.0
Q ss_pred CCcEEEEEEEcCcchhH-----HHHHHHHHHHhcccCCCCceEEEEEECCeEEEEE-ccCCCCCCCeeEEecCCccCCHH
Q 004199 128 VPPVFMFVVDTCIIEEE-----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKD 201 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~-----l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~ 201 (769)
.+.-.+||||+|.+... ++.+++.+...+ .++.+||+|+|++..+..- +.
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~---~~~~~v~lv~f~~~~~~~~~~~--------------------- 60 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFV---SPEMRLSFIVFSSQATIILPLT--------------------- 60 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCC---CTTEEEEEEEESSSEEEEEEEE---------------------
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHhc---CCCceEEEEEeCCCceEEECCC---------------------
Confidence 46778999999998654 234444444333 3689999999998665421 11
Q ss_pred HHHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHH
Q 004199 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (769)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~l 281 (769)
..+..+...|+.|... .+ ...+.++.||..|...
T Consensus 61 ----------------------------------------~~~~~~~~~l~~l~~~---~~---~g~T~~~~al~~a~~~ 94 (182)
T 1shu_X 61 ----------------------------------------GDRGKISKGLEDLKRV---SP---VGETYIHEGLKLANEQ 94 (182)
T ss_dssp ----------------------------------------CCHHHHHHHHHHHHTC---CC---CSCCCHHHHHHHHHHH
T ss_pred ----------------------------------------CCHHHHHHHHHhcccC---CC---CCCchHHHHHHHHHHH
Confidence 0122344455555431 11 2357899999999999
Q ss_pred hhccC-CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 004199 282 LGACV-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (769)
Q Consensus 282 l~~~~-~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~ 360 (769)
+.... ++....|++++.|.++.+ ......+.+..+...|+.|..+..+
T Consensus 95 l~~~~~~~~~~~iiliTDG~~~~~-----------------------------~~~~~~~~~~~~~~~~i~i~~igvg-- 143 (182)
T 1shu_X 95 IQKAGGLKTSSIIIALTDGKLDGL-----------------------------VPSYAEKEAKISRSLGASVYCVGVL-- 143 (182)
T ss_dssp HHHHTGGGSCEEEEEEECCCCCTT-----------------------------HHHHHHHHHHHHHHTTCEEEEEECS--
T ss_pred HHhccCCCCCeEEEEECCCCcCCC-----------------------------CchhHHHHHHHHHhCCCEEEEEeCC--
Confidence 97421 134567888888865421 1122345677778888877777665
Q ss_pred ccChhhhhhhhhccCceEEEeCCCC
Q 004199 361 QVGVAELKVAVEKTGGLVVLSDSFG 385 (769)
Q Consensus 361 ~~~l~~m~~l~~~TGG~v~~~~~f~ 385 (769)
..+-.+|..++..|||..+.-++|.
T Consensus 144 ~~~~~~L~~ia~~~~~~~~~~~~~~ 168 (182)
T 1shu_X 144 DFEQAQLERIADSKEQVFPVKGGFQ 168 (182)
T ss_dssp SCCHHHHHHHSSSGGGEEESSSTTH
T ss_pred cCCHHHHHHHhCCCCceEEccCCHH
Confidence 5678899999999987544332443
No 18
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.00 E-value=0.0001 Score=73.39 Aligned_cols=162 Identities=11% Similarity=0.036 Sum_probs=107.0
Q ss_pred CCcEEEEEEEcCcchhHHHHHHHHHHHhcccCC---CCceEEEEEECCeEEEEE-ccCCCCCCCeeEEecCCccCCHHHH
Q 004199 128 VPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQL 203 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~~l 203 (769)
.+.-.+||||.|.+...++.+++.++..++.+. ++.+||+|+|++.++..- +. .
T Consensus 6 ~~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~-~--------------------- 63 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN-K--------------------- 63 (213)
T ss_dssp -CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTT-T---------------------
T ss_pred CCccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEecc-c---------------------
Confidence 467889999999988778889999998888774 789999999998765421 11 0
Q ss_pred HHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHh-
Q 004199 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL- 282 (769)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll- 282 (769)
+ . ....+...|+.+... . ...+.+|.||..|...+
T Consensus 64 --------------------------------~----~-~~~~~~~~i~~l~~~-----~--G~~T~~~~aL~~a~~~l~ 99 (213)
T 1pt6_A 64 --------------------------------Y----S-STEEVLVAAKKIVQR-----G--GRQTMTALGTDTARKEAF 99 (213)
T ss_dssp --------------------------------C----S-SHHHHHHHHHTCCCC-----C--CSSCCHHHHHHHHHHTTT
T ss_pred --------------------------------c----C-CHHHHHHHHHhccCC-----C--CCcccHHHHHHHHHHHhc
Confidence 0 0 122334445555431 1 12367999999999864
Q ss_pred hc---cCCCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecC
Q 004199 283 GA---CVPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACAL 359 (769)
Q Consensus 283 ~~---~~~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~ 359 (769)
.. ..++....|++++.|.++.|. -+.+.+..+.+.||.|..+..+.
T Consensus 100 ~~~~~~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~~~~~gi~i~~igig~ 148 (213)
T 1pt6_A 100 TEARGARRGVKKVMVIVTDGESHDNH-------------------------------RLKKVIQDCEDENIQRFSIAILG 148 (213)
T ss_dssp SGGGTCCTTCEEEEEEEESSCCSCSH-------------------------------HHHHHHHHHHHTTEEEEEEEECH
T ss_pred CcccCCCCCCCeEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEecc
Confidence 31 111234458888998665431 12356677778888777776643
Q ss_pred Cc----cC----hhhhhhhhhc-cCceEEEeCCCCc
Q 004199 360 DQ----VG----VAELKVAVEK-TGGLVVLSDSFGH 386 (769)
Q Consensus 360 ~~----~~----l~~m~~l~~~-TGG~v~~~~~f~~ 386 (769)
+. .+ ..+|..+|.. |||.+|..+++..
T Consensus 149 ~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~ 184 (213)
T 1pt6_A 149 SYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 184 (213)
T ss_dssp HHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred ccccccccchhhHHHHHHHhCCCchhcEEEeCCHHH
Confidence 21 11 3689999998 8899999887764
No 19
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.97 E-value=1e-06 Score=86.38 Aligned_cols=110 Identities=19% Similarity=0.150 Sum_probs=76.3
Q ss_pred CCcEEEEEEEcCcch--hHHHHHHHHHHHhcccC-CCCceEEEEEECC-eEEEEEccCCCCCCCeeEEecCCccCCHHHH
Q 004199 128 VPPVFMFVVDTCIIE--EEMSFLKSALSQAIDLL-PDNSLVGLITFGT-LVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (769)
Q Consensus 128 ~~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l-p~~~~VglITfd~-~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (769)
.|..++||||+|.+. ..++.+++++...++.+ +++.+||+|+|++ ..++
T Consensus 4 ~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~--------------------------- 56 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQV--------------------------- 56 (189)
T ss_dssp SCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCB---------------------------
T ss_pred CCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceE---------------------------
Confidence 567789999999987 34888899998888776 8889999999985 2210
Q ss_pred HHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHhh
Q 004199 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLG 283 (769)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll~ 283 (769)
+ .|+. .....+...|+.+... ..+.++.||..|..++.
T Consensus 57 ---~-----------------------~~~~-------~~~~~~~~~i~~l~~~---------g~T~~~~al~~a~~~l~ 94 (189)
T 2x31_A 57 ---L-----------------------LQPS-------RSLTQTKRQLQGLPGG---------GGTPLASGMEMAMVTAK 94 (189)
T ss_dssp ---C-----------------------TTTC-------SCHHHHHHHHHHCCCC---------BCCCCHHHHHHHHHHHH
T ss_pred ---e-----------------------cCCC-------CCHHHHHHHHhcCCCC---------CCCCHHHHHHHHHHHHH
Confidence 0 1110 0133455666776541 24678999999999998
Q ss_pred ccC-CCCCcEEEEEecCCCCCCCc
Q 004199 284 ACV-PGSGARILAFVGGPSTEGPA 306 (769)
Q Consensus 284 ~~~-~~~ggrI~~F~sg~pt~GpG 306 (769)
... ++....|++++.|.++.|+.
T Consensus 95 ~~~~~~~~~~ivliTDG~~~~~~~ 118 (189)
T 2x31_A 95 QARSRGMTPTIALLTDGRGNIALD 118 (189)
T ss_dssp TCTTTCSSEEEEECCBSCCSSCCT
T ss_pred hccCCCCceEEEEECCCCCCCCCC
Confidence 421 12356889999999998753
No 20
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.97 E-value=7e-05 Score=73.53 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=106.8
Q ss_pred CCcEEEEEEEcCcchhH--HHHHHHHHHHhcccC-CCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHHH
Q 004199 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~--l~~~~~~l~~~l~~l-p~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~ 204 (769)
.+.-.+||||+|.+... ++..++.++..++.+ +++.+||+|+|++.++..- . ..+..
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~-~-------------------~~~~~ 67 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHF-T-------------------FEEFR 67 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEE-C-------------------HHHHH
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEE-e-------------------cCccC
Confidence 45778999999998643 778889999999888 7899999999998765421 0 01111
Q ss_pred HHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHH-HHhh
Q 004199 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-SLLG 283 (769)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~-~ll~ 283 (769)
.. . .+...|+.+.. ....+.+|.||..|. .++.
T Consensus 68 ~~---------------------------~-----------~~~~~i~~l~~--------~~g~T~~~~al~~a~~~l~~ 101 (198)
T 1n3y_A 68 RS---------------------------S-----------NPLSLLASVHQ--------LQGFTYTATAIQNVVHRLFH 101 (198)
T ss_dssp HC---------------------------S-----------SGGGGGTTCCC--------CCSCBCHHHHHHHHHTTTTS
T ss_pred CH---------------------------H-----------HHHHHHhcCcC--------CCCCchHHHHHHHHHHHHhC
Confidence 00 0 00111222221 123678999999999 5544
Q ss_pred cc---CCCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 004199 284 AC---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (769)
Q Consensus 284 ~~---~~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~ 360 (769)
.. .++....|++++.|.++.++- . +.+.+..+.+.||.|..+..+.+
T Consensus 102 ~~~~~r~~~~~~iillTDG~~~~~~~----------------------~--------~~~~~~~~~~~gi~i~~igvG~~ 151 (198)
T 1n3y_A 102 ASYGARRDAAKILIVITDGKKEGDSL----------------------D--------YKDVIPMADAAGIIRYAIGVGLA 151 (198)
T ss_dssp GGGTCCTTSEEEEEEEESSCCBSCSS----------------------C--------HHHHHHHHHHTTCEEEEEEESGG
T ss_pred cccCCCCCCceEEEEECCCCCCCCcc----------------------c--------HHHHHHHHHHCCCEEEEEEcccc
Confidence 21 123345788999997763320 0 23456777888998888877654
Q ss_pred c---cChhhhhhhhhccCceE-EEeCCCCc
Q 004199 361 Q---VGVAELKVAVEKTGGLV-VLSDSFGH 386 (769)
Q Consensus 361 ~---~~l~~m~~l~~~TGG~v-~~~~~f~~ 386 (769)
. .+..+|..++..|||.. +..+++..
T Consensus 152 ~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 181 (198)
T 1n3y_A 152 FQNRNSWKELNDIASKPSQEHIFKVEDFDA 181 (198)
T ss_dssp GGSSTTHHHHHHHSCSSSGGGEEEESSGGG
T ss_pred ccccccHHHHHHHHcCCCcccEEEeCCHHH
Confidence 3 36789999999999974 66666543
No 21
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.93 E-value=6.2e-05 Score=73.79 Aligned_cols=163 Identities=13% Similarity=0.161 Sum_probs=103.3
Q ss_pred CCcEEEEEEEcCcchh--HHHHHHHHHHHhcccC-CCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHHH
Q 004199 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l-p~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~ 204 (769)
.+.-.+||||.|.+.. .++.+++.++..++.+ +++.+||+|+|++.++..- . ..+..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~-~-------------------l~~~~ 63 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHF-T-------------------FKEFQ 63 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEE-C-------------------HHHHH
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEE-e-------------------cCCcC
Confidence 4677899999999864 3788888888888877 4678999999998765421 1 01110
Q ss_pred HHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHH-Hhh
Q 004199 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-LLG 283 (769)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~-ll~ 283 (769)
+ +..+...|+.|+. . ...+.+|.||..|.. ++.
T Consensus 64 ~--------------------------------------~~~~~~~i~~l~~-----~---~g~T~~~~aL~~a~~~l~~ 97 (194)
T 1mf7_A 64 N--------------------------------------NPNPRSLVKPITQ-----L---LGRTHTATGIRKVVRELFN 97 (194)
T ss_dssp H--------------------------------------SCCHHHHHTTCCC-----C---CSCBCHHHHHHHHHHTTTS
T ss_pred C--------------------------------------HHHHHHHHHhCcC-----C---CCCchHHHHHHHHHHHhcC
Confidence 0 0112334445442 1 235789999999996 443
Q ss_pred cc---CCCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 004199 284 AC---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (769)
Q Consensus 284 ~~---~~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~ 360 (769)
.. .++....|++++.|.++..+- . +.+.+..+.+.||.|..+..+.+
T Consensus 98 ~~~~~r~~~~~~iillTDG~~~~d~~----------------------~--------~~~~~~~~~~~gi~v~~igvG~~ 147 (194)
T 1mf7_A 98 ITNGARKNAFKILVVITDGEKFGDPL----------------------G--------YEDVIPEADREGVIRYVIGVGDA 147 (194)
T ss_dssp GGGTCCTTSEEEEEEEESSCCBSCSS----------------------C--------GGGTHHHHHHTTEEEEEEEESGG
T ss_pred cccCCCCCCCeEEEEEcCCCCCCCch----------------------h--------hHHHHHHHHHCCCEEEEEEeccc
Confidence 20 111234588899998771110 0 01234556778887777766543
Q ss_pred c---cChhhhhhhhhcc-CceEEEeCCCCc
Q 004199 361 Q---VGVAELKVAVEKT-GGLVVLSDSFGH 386 (769)
Q Consensus 361 ~---~~l~~m~~l~~~T-GG~v~~~~~f~~ 386 (769)
. .+..+|..++..+ ||.++..+++..
T Consensus 148 ~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 177 (194)
T 1mf7_A 148 FRSEKSRQELNTIASKPPRDHVFQVNNFEA 177 (194)
T ss_dssp GCSHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred ccccccHHHHHHHhCCCCcccEEEeCCHHH
Confidence 2 1378899999986 588888887754
No 22
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.92 E-value=0.00021 Score=70.16 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=97.4
Q ss_pred EEEEEEEcCcchh-------HHHHHHHHHHHhccc---CCCCceEEEEEECCe-EEEEEccCCCCCCCeeEEecCCccCC
Q 004199 131 VFMFVVDTCIIEE-------EMSFLKSALSQAIDL---LPDNSLVGLITFGTL-VQVHELGGFGQIIPKTYVFKGSKDVS 199 (769)
Q Consensus 131 ~~vFvID~s~~~~-------~l~~~~~~l~~~l~~---lp~~~~VglITfd~~-V~~~~l~~~~~~~~~~~v~~g~~~~~ 199 (769)
..+|+||+|.++. .++..++.+...+.. ..+..+||||+|.+. -++-
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~---------------------- 61 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVL---------------------- 61 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEE----------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEe----------------------
Confidence 5799999999864 277777776654432 234579999999742 2110
Q ss_pred HHHHHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHH
Q 004199 200 KDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA 279 (769)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~ 279 (769)
.|+......+...|+++.. ...+++|.||..|.
T Consensus 62 --------------------------------------~plT~d~~~i~~~L~~l~~---------~g~t~l~~aL~~A~ 94 (192)
T 2x5n_A 62 --------------------------------------STLTRDYGKFLSAMHDLPV---------RGNAKFGDGIQIAQ 94 (192)
T ss_dssp --------------------------------------EEEESCHHHHHHHHTTCCC---------CSCCCHHHHHHHHH
T ss_pred --------------------------------------cCCCCCHHHHHHHHHcCCC---------CCCchHHHHHHHHH
Confidence 1112224456666666544 12578999999999
Q ss_pred HHhhccC-CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEec
Q 004199 280 SLLGACV-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (769)
Q Consensus 280 ~ll~~~~-~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~ 358 (769)
.+|+... +....||++|+++.-+.. ..-..++++.+.+.||.|+++.++
T Consensus 95 ~~l~~~~~~~~~~riiil~~~~~~~~------------------------------~~~~~~~a~~lk~~gi~v~~Ig~G 144 (192)
T 2x5n_A 95 LALKHRENKIQRQRIVAFVGSPIVED------------------------------EKNLIRLAKRMKKNNVAIDIIHIG 144 (192)
T ss_dssp HHHHTCSCTTSEEEEEEEECSCCSSC------------------------------HHHHHHHHHHHHHTTEEEEEEEES
T ss_pred HHHHhccccCCCceEEEEEECCCCCC------------------------------chhHHHHHHHHHHCCCEEEEEEeC
Confidence 9998521 123568888887622100 111457899999999999999998
Q ss_pred CCccChhhhhhhhhccC----ceEEEeCCC
Q 004199 359 LDQVGVAELKVAVEKTG----GLVVLSDSF 384 (769)
Q Consensus 359 ~~~~~l~~m~~l~~~TG----G~v~~~~~f 384 (769)
.+.-+-. |..+++.++ +.++..+..
T Consensus 145 ~~~~~~~-l~~la~~~n~~~~s~~~~~~~~ 173 (192)
T 2x5n_A 145 ELQNESA-LQHFIDAANSSDSCHLVSIPPS 173 (192)
T ss_dssp CC---CH-HHHHHHHHCSTTCCEEEEECCC
T ss_pred CCCccHH-HHHHHHhccCCCceEEEEecCc
Confidence 7665556 888888842 344444444
No 23
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.91 E-value=0.00012 Score=82.85 Aligned_cols=186 Identities=15% Similarity=0.124 Sum_probs=110.4
Q ss_pred cEEEEEEEcCcchh--HHHHHHHHHHHhcccC---CCCceEEEEEECCeEEEEE-ccCCCCCCCeeEEecCCccCCHHHH
Q 004199 130 PVFMFVVDTCIIEE--EMSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQL 203 (769)
Q Consensus 130 p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l---p~~~~VglITfd~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~~l 203 (769)
.-.+||||.|.+.. .++.+++.++..++.+ +++.+||||+|++..++.- +.
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~----------------------- 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS----------------------- 58 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT-----------------------
T ss_pred eeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccc-----------------------
Confidence 45799999999864 4888888888888764 5579999999998765421 11
Q ss_pred HHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHhh
Q 004199 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLG 283 (769)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll~ 283 (769)
.| ....+..+...|++|..... .....+.+|.||..|..++.
T Consensus 59 ---------------------------~~-------~~~~~~~~~~~l~~l~~~~~----~~~g~T~~~~al~~a~~~l~ 100 (497)
T 1rrk_A 59 ---------------------------EA-------DSSNADWVTKQLNEINYEDH----KLKSGTNTKKALQAVYSMMS 100 (497)
T ss_dssp ---------------------------SG-------GGGCHHHHHHHHHHCCGGGS----CCTTCCCHHHHHHHHHHHHC
T ss_pred ---------------------------cc-------cccCHHHHHHHHHhCcCccc----cccCccCHHHHHHHHHHHhh
Confidence 00 01123466677777765210 01346789999999999994
Q ss_pred ccC-------CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEE
Q 004199 284 ACV-------PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFA 356 (769)
Q Consensus 284 ~~~-------~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~ 356 (769)
... +.....|+++++|.++.|....... +.++...++. ..+..+.+.+|.|..+.
T Consensus 101 ~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~---~~~~~~~~~~---------------~~~~~~~~~~i~v~~ig 162 (497)
T 1rrk_A 101 WPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVI---DEIRDLLYIG---------------KDRKNPREDYLDVYVFG 162 (497)
T ss_dssp CC------CGGGCEEEEEEEECSCCCSSSCTHHHH---HHHHHHTTCS---------------SCC-CCCGGGEEEEEEE
T ss_pred hhhccccccccccceEEEEEeCCCcccCCChhHHH---HHHHHHhhhh---------------cccccchhcCeeEEEec
Confidence 210 1233578889999888764110000 0000000000 00011122366655554
Q ss_pred ecCCccChhhhhhhhhccCc--eEEEeCCCCchhhHHHHHHHh
Q 004199 357 CALDQVGVAELKVAVEKTGG--LVVLSDSFGHAVFKDSVRRVF 397 (769)
Q Consensus 357 ~~~~~~~l~~m~~l~~~TGG--~v~~~~~f~~~~~~~~l~~~~ 397 (769)
.+ +.++..+|..+|..+|| .++..++++ .+.+-+.+.+
T Consensus 163 vG-~~~~~~~L~~iA~~~~g~~~~~~~~~~~--~l~~~~~~~i 202 (497)
T 1rrk_A 163 VG-PLVNQVNINALASKKDNEQHVCKVKDME--CLEDVFYQMI 202 (497)
T ss_dssp CS-SSCCHHHHHHHSCCCTTCCCEEETTCHH--HHHHHHHHHS
T ss_pred CC-CccCHHHHHHHhcCCCCcceEEEeCCHH--HHhhhhhhcc
Confidence 43 44788999999999999 888776543 3444444444
No 24
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.87 E-value=0.00012 Score=83.28 Aligned_cols=177 Identities=15% Similarity=0.090 Sum_probs=112.9
Q ss_pred CCcEEEEEEEcCcchhH--HHHHHHHHHHhcccC---CCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHH
Q 004199 128 VPPVFMFVVDTCIIEEE--MSFLKSALSQAIDLL---PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQ 202 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~--l~~~~~~l~~~l~~l---p~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~ 202 (769)
.+.-.+||||.|.+... ++.++++++..++.| +++.+||||+|++..++.- . ..
T Consensus 8 ~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~-~-l~------------------- 66 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLM-S-VL------------------- 66 (509)
T ss_dssp SEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEE-C-TT-------------------
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeE-e-cc-------------------
Confidence 46778999999998643 888999999988877 7889999999998776521 1 00
Q ss_pred HHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHh
Q 004199 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (769)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll 282 (769)
. + .......+...|++|+.... .....+.++.||..|..++
T Consensus 67 --~--------------------------~-------~~~~~~~~~~~l~~l~~~~~----~~~ggT~~~~aL~~a~~~l 107 (509)
T 2odp_A 67 --N--------------------------D-------NSRDMTEVISSLENANYKDH----ENGTGTNTYAALNSVYLMM 107 (509)
T ss_dssp --S--------------------------G-------GGGCHHHHHHHHHTCCGGGG----TTCCSCCHHHHHHHHHHHH
T ss_pred --C--------------------------C-------CCCCHHHHHHHHHhcccccC----CCCCCccHHHHHHHHHHHH
Confidence 0 0 00113455666677655210 0124678999999999998
Q ss_pred hccCC----------CCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHH------
Q 004199 283 GACVP----------GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLV------ 346 (769)
Q Consensus 283 ~~~~~----------~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~------ 346 (769)
..... .....|++++.|.++.|. .. .+.+..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-~~------------------------------~~~~~~~~~~~~~~ 156 (509)
T 2odp_A 108 NNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG-SP------------------------------KTAVDHIREILNIN 156 (509)
T ss_dssp HHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-CT------------------------------HHHHHHHHHHTTCC
T ss_pred hhcccccccccccccccceEEEEECCCCccCCC-Ch------------------------------hHHHHHHHHHhhcc
Confidence 52100 122457999999877652 00 01111111
Q ss_pred ---hcCcEEEEEEecCCccChhhhhhhhhccCce--EEEeCCCCchhhHHHHHHHh
Q 004199 347 ---HQGHVLDLFACALDQVGVAELKVAVEKTGGL--VVLSDSFGHAVFKDSVRRVF 397 (769)
Q Consensus 347 ---~~~isvDlf~~~~~~~~l~~m~~l~~~TGG~--v~~~~~f~~~~~~~~l~~~~ 397 (769)
+.++.|..+..+.+..+..+|..+|..+||. ++..++++ .+.+-+.+++
T Consensus 157 ~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~--~l~~~~~~i~ 210 (509)
T 2odp_A 157 QKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTK--ALHQVFEHML 210 (509)
T ss_dssp STTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHH--HHHHHHHHHE
T ss_pred ccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHH--HHHHHHHhhh
Confidence 4566666666654448999999999999998 66666553 3344444444
No 25
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=97.80 E-value=0.00036 Score=72.71 Aligned_cols=165 Identities=12% Similarity=0.047 Sum_probs=107.8
Q ss_pred CCcEEEEEEEcCcchh--HH-HHHHHHHHHhcccCCC---CceEEEEEECCeEEE-EEccCCCCCCCeeEEecCCccCCH
Q 004199 128 VPPVFMFVVDTCIIEE--EM-SFLKSALSQAIDLLPD---NSLVGLITFGTLVQV-HELGGFGQIIPKTYVFKGSKDVSK 200 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l-~~~~~~l~~~l~~lp~---~~~VglITfd~~V~~-~~l~~~~~~~~~~~v~~g~~~~~~ 200 (769)
.+.-++||||.|.+.. .+ +.++++++..++.++. +.+||||+|++.++. +.+. .. .
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~-~~------------~---- 82 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLH-SD------------A---- 82 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEEC-SS------------C----
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEcc-cc------------C----
Confidence 4667999999999865 35 8899999999998875 789999999987643 2333 11 0
Q ss_pred HHHHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHH
Q 004199 201 DQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS 280 (769)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ 280 (769)
...+..+...|+.|.... .. ...+.+|.||..|..
T Consensus 83 ----------------------------------------~~~~~~l~~~i~~l~~~~--~~---~G~T~~~~aL~~a~~ 117 (281)
T 4hqf_A 83 ----------------------------------------SKNKEKALIIIKSLLSTN--LP---YGKTSLTDALLQVRK 117 (281)
T ss_dssp ----------------------------------------SSCHHHHHHHHHHHHHTT--GG---GCSCCHHHHHHHHHH
T ss_pred ----------------------------------------ccCHHHHHHHHHHHhhcc--CC---CCCccHHHHHHHHHH
Confidence 001223444555554210 11 235789999999988
Q ss_pred HhhccC--CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEec
Q 004199 281 LLGACV--PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (769)
Q Consensus 281 ll~~~~--~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~ 358 (769)
.+.... ++....|++++.|.++.+ .-..+.+..+...||.|-.+..+
T Consensus 118 ~l~~~~~r~~~~~~iillTDG~~~d~-------------------------------~~~~~~~~~l~~~gv~i~~igiG 166 (281)
T 4hqf_A 118 HLNDRINRENANQLVVILTDGIPDSI-------------------------------QDSLKESRKLSDRGVKIAVFGIG 166 (281)
T ss_dssp HHHTSCCCTTCEEEEEEEESSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEEES
T ss_pred HHHhccCCCCCCEEEEEEecCCCCCc-------------------------------HHHHHHHHHHHHCCCEEEEEeCC
Confidence 776311 112345888888865411 01234566777888777666654
Q ss_pred CCccChhhhhhhhhc--cCc--eEEEeCCCCc
Q 004199 359 LDQVGVAELKVAVEK--TGG--LVVLSDSFGH 386 (769)
Q Consensus 359 ~~~~~l~~m~~l~~~--TGG--~v~~~~~f~~ 386 (769)
. ..+-..|..++.. +|| .++...+|+.
T Consensus 167 ~-~~~~~~L~~iA~~~~~~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 167 Q-GINVAFNRFLVGCHPSDGKCNLYADSAWEN 197 (281)
T ss_dssp S-SCCHHHHHHHTTSCSSSSCCTTEEEECGGG
T ss_pred C-ccCHHHHHhhhCCCCCCCCCceEEecchhh
Confidence 3 4677888999877 566 7888888865
No 26
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.78 E-value=0.00029 Score=68.13 Aligned_cols=154 Identities=11% Similarity=0.163 Sum_probs=97.2
Q ss_pred CcEEEEEEEcCcchh--HHHHHHHHHHHhcccC-CCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHHHH
Q 004199 129 PPVFMFVVDTCIIEE--EMSFLKSALSQAIDLL-PDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLE 205 (769)
Q Consensus 129 ~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l-p~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~~ 205 (769)
|.-.+||||.|.+.. .++.+++.++..++.+ |++.+||+|+|++.++.. .. ..+...
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~-~~-------------------l~~~~~ 61 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTE-FD-------------------FSDYVK 61 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEE-EC-------------------HHHHHH
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEE-Ec-------------------CcccCC
Confidence 456899999999754 3888899999888888 456899999999877542 11 011100
Q ss_pred HhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHH-Hhhc
Q 004199 206 QLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-LLGA 284 (769)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~-ll~~ 284 (769)
+..+..+++.|+.. ...+.+|.||..|.. ++..
T Consensus 62 --------------------------------------~~~~~~~~~~i~~~--------~g~T~~~~aL~~a~~~~~~~ 95 (179)
T 1mjn_A 62 --------------------------------------RKDPDALLKHVKHM--------LLLTNTFGAINYVATEVFRE 95 (179)
T ss_dssp --------------------------------------HCCHHHHHTTCCCC--------CBCCCHHHHHHHHHHHTSSG
T ss_pred --------------------------------------HHHHHHHHHhcccC--------CCCChHHHHHHHHHHHhccc
Confidence 11234455555441 135789999999985 5542
Q ss_pred c--C-CCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCc
Q 004199 285 C--V-PGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQ 361 (769)
Q Consensus 285 ~--~-~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~ 361 (769)
. . ++..-.|++++.|.++.|.- . + ...|+.|-.+..+. .
T Consensus 96 ~~g~r~~~~~~iillTDG~~~~~~~----------------~---------~------------~~~~i~i~~igvG~-~ 137 (179)
T 1mjn_A 96 ELGARPDATKVLIIITDGEATDSGN----------------I---------D------------AAKDIIRYIIGIGK-H 137 (179)
T ss_dssp GGTCCTTSEEEEEEEESSCCSSCSC----------------C---------G------------GGTTSEEEEEEESG-G
T ss_pred ccCCCCCCCeEEEEEcCCCCCCCcc----------------h---------H------------HHCCCEEEEEEccc-c
Confidence 1 0 11223588889998765420 0 0 12466555554443 2
Q ss_pred cC----hhhhhhhhhccCc-eEEEeCCCCc
Q 004199 362 VG----VAELKVAVEKTGG-LVVLSDSFGH 386 (769)
Q Consensus 362 ~~----l~~m~~l~~~TGG-~v~~~~~f~~ 386 (769)
.+ ..+|..++..+|| .+|..++|..
T Consensus 138 ~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 167 (179)
T 1mjn_A 138 FQTKESQETLHKFASKPASEFVKILDTFEK 167 (179)
T ss_dssp GCSHHHHHTTGGGSCSCHHHHEEEESSGGG
T ss_pred ccccccHHHHHHHhCCccHhcEEEeCCHHH
Confidence 33 4789999999987 5788787754
No 27
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=97.67 E-value=0.00016 Score=63.50 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=64.7
Q ss_pred cceeEeecCCC--CCccccccccccccCeEEEEeCCcEEEEEECCCchHHHHccCCCCchhHHHHHhhhCcHHHHHHHH-
Q 004199 629 QPSLISYSFHS--GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIM- 705 (769)
Q Consensus 629 ~P~L~~~~~~~--~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~- 705 (769)
.|+||.+...+ ....|+++.++|.++.+||||+|..||+|+|+.++. .+. ......|+.+.
T Consensus 2 ~~rL~~v~g~~~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~-----------~Ek-----~~A~~~a~~i~~ 65 (104)
T 1kcq_A 2 VQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNR-----------YER-----LKATQVSKGIRD 65 (104)
T ss_dssp CCEEEEEEESSSEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCH-----------HHH-----HHHHHHHHHHHH
T ss_pred CcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCH-----------HHH-----HHHHHHHHHHHh
Confidence 48899987643 246788999999999999999999999999998752 111 11234556665
Q ss_pred hcCCCCcEEEEEcCCCChHHHHHhhhC
Q 004199 706 KERFPVPRLVICDQHGSQARFLLAKLN 732 (769)
Q Consensus 706 ~~R~~~p~~~~~~~g~s~~r~l~s~L~ 732 (769)
.+|.....+.++++|...+.||. -|.
T Consensus 66 ~er~~~~~i~~v~eG~E~~~Fw~-~LG 91 (104)
T 1kcq_A 66 NERSGRARVHVSEEGTEPEAMLQ-VLG 91 (104)
T ss_dssp HTSTTCSEEEEEETTCCCHHHHH-HHC
T ss_pred hccCCCCcEEEEeCCCCCHHHHH-HcC
Confidence 36777788999999988888864 354
No 28
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=97.67 E-value=0.00055 Score=70.77 Aligned_cols=164 Identities=13% Similarity=0.019 Sum_probs=106.1
Q ss_pred CCcEEEEEEEcCcchhH--H-HHHHHHHHHhcccCC---CCceEEEEEECCeEEEEE-ccCCCCCCCeeEEecCCccCCH
Q 004199 128 VPPVFMFVVDTCIIEEE--M-SFLKSALSQAIDLLP---DNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSK 200 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~--l-~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~ 200 (769)
.+.-++||||.|.+... + +.+++.++..++.+. ++.+||||+|++.++..- +. .
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~-~------------------ 77 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLG-S------------------ 77 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTT-S------------------
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecC-C------------------
Confidence 45678999999998653 6 578899998888886 679999999998765421 11 0
Q ss_pred HHHHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHH
Q 004199 201 DQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS 280 (769)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ 280 (769)
.. +..+..+...|++|+... .+ ...+.+|.||..|..
T Consensus 78 --~~------------------------------------~~~~~~~~~~i~~l~~~~--~~---~G~T~~~~AL~~a~~ 114 (266)
T 4hqo_A 78 --GQ------------------------------------SIDKRQALSKVTELRKTY--TP---YGTTSMTAALDEVQK 114 (266)
T ss_dssp --HH------------------------------------HHCHHHHHHHHHHHHHHC--CC---CSCCCHHHHHHHHHH
T ss_pred --CC------------------------------------ccCHHHHHHHHHHhhhcc--CC---CCCCCHHHHHHHHHH
Confidence 00 001234556666664100 01 235789999999999
Q ss_pred Hhhcc--CCCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEec
Q 004199 281 LLGAC--VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACA 358 (769)
Q Consensus 281 ll~~~--~~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~ 358 (769)
++... .++....|+++++|.++-+ .-..+.+..+.+.||.|-.+..+
T Consensus 115 ~l~~~~~r~~~~~~iIllTDG~~~d~-------------------------------~~~~~~a~~l~~~gi~i~~iGiG 163 (266)
T 4hqo_A 115 HLNDRVNREKAIQLVILMTDGVPNSK-------------------------------YRALEVANKLKQRNVRLAVIGIG 163 (266)
T ss_dssp HHHTTCSCTTSEEEEEEEECSCCSCH-------------------------------HHHHHHHHHHHHTTCEEEEEECS
T ss_pred HHhhccccCCCCeEEEEEccCCCCCc-------------------------------hHHHHHHHHHHHCCCEEEEEecC
Confidence 98741 0122346788888865410 11235677777888777666654
Q ss_pred CCccChhhhhhhhhcc--Cc--eEEEeCCCC
Q 004199 359 LDQVGVAELKVAVEKT--GG--LVVLSDSFG 385 (769)
Q Consensus 359 ~~~~~l~~m~~l~~~T--GG--~v~~~~~f~ 385 (769)
+..+-..|..++... || .++++.+|+
T Consensus 164 -~~~~~~~L~~iA~~~~~~g~~~~~~~~d~~ 193 (266)
T 4hqo_A 164 -QGINHQFNRLIAGCRPREPNCKFYSYADWN 193 (266)
T ss_dssp -SSCCHHHHHHHHTCCTTCSSCTTEECSCHH
T ss_pred -cccCHHHHHHhhCCCCCCCCCCeEEecCHH
Confidence 356777778889775 33 777777664
No 29
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.65 E-value=0.0014 Score=63.33 Aligned_cols=157 Identities=14% Similarity=0.074 Sum_probs=98.2
Q ss_pred CCcEEEEEEEcCcchhH-HHHHHHHHHHhccc-CCCCceEEEEEECCeEEEEE-ccCCCCCCCeeEEecCCccCCHHHHH
Q 004199 128 VPPVFMFVVDTCIIEEE-MSFLKSALSQAIDL-LPDNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQLL 204 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~-l~~~~~~l~~~l~~-lp~~~~VglITfd~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~~l~ 204 (769)
.+.-.+||||.|.+... .+.+++.++..+.. +.++.+||+|+|++.+++.- +.
T Consensus 6 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~------------------------ 61 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLT------------------------ 61 (185)
T ss_dssp SEEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE------------------------
T ss_pred CCeeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccC------------------------
Confidence 45568999999998643 44555555555443 34689999999987665421 11
Q ss_pred HHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHhhc
Q 004199 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLLGA 284 (769)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~ 284 (769)
+.+..+...|+.|+.. .+ ...+.+|.||..|...+..
T Consensus 62 -------------------------------------~~~~~~~~~i~~l~~~---~~---~g~T~~~~al~~a~~~l~~ 98 (185)
T 3n2n_F 62 -------------------------------------EDREQIRQGLEELQKV---LP---GGDTYMHEGFERASEQIYY 98 (185)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHTC---CC---CSCCCHHHHHHHHHHHHHH
T ss_pred -------------------------------------CCHHHHHHHHHHHhhh---cC---CCCccHHHHHHHHHHHHhh
Confidence 1133455566666541 11 2357899999999997731
Q ss_pred c---CCCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCCc
Q 004199 285 C---VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALDQ 361 (769)
Q Consensus 285 ~---~~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~~ 361 (769)
. .......|++++.|.++.++. .-..+.+..+.+.||.|..+..+ .
T Consensus 99 ~~~~~~~~~~~iillTDG~~~~~~~-----------------------------~~~~~~~~~~~~~gi~i~~igvg--~ 147 (185)
T 3n2n_F 99 ENRQGYRTASVIIALTDGELHEDLF-----------------------------FYSEREANRSRDLGAIVYAVGVK--D 147 (185)
T ss_dssp HHTTCBCEEEEEEEEECCCCCHHHH-----------------------------HHHHHHHHHHHHTTEEEEEEECS--S
T ss_pred ccccCCCCCcEEEEEcCCCCCCCcc-----------------------------cchHHHHHHHHHCCCEEEEEEec--c
Confidence 0 011234788888886543210 01134677777888776666554 6
Q ss_pred cChhhhhhhhhccCceEEEeCC
Q 004199 362 VGVAELKVAVEKTGGLVVLSDS 383 (769)
Q Consensus 362 ~~l~~m~~l~~~TGG~v~~~~~ 383 (769)
.+-.+|..++.. +|.+|...+
T Consensus 148 ~~~~~L~~iA~~-~~~~~~~~~ 168 (185)
T 3n2n_F 148 FNETQLARIADS-KDHVFPVND 168 (185)
T ss_dssp CCHHHHTTTSSS-GGGEEEHHH
T ss_pred CCHHHHHHHhCC-CCCeEEecc
Confidence 788899999965 577777654
No 30
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.49 E-value=0.0025 Score=62.56 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=41.4
Q ss_pred CCcEEEEEEEcCcchh--HHHHHHHHHHHhcccC---CCCceEEEEEECCeEEE
Q 004199 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLL---PDNSLVGLITFGTLVQV 176 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~l---p~~~~VglITfd~~V~~ 176 (769)
.+--.+||||.|.+.. .++.+++.++..++.+ +++.+||+|+|++.++.
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~ 73 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTV 73 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEE
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccE
Confidence 5667899999999864 3888999999999888 57899999999987754
No 31
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.49 E-value=0.00021 Score=85.06 Aligned_cols=177 Identities=16% Similarity=0.097 Sum_probs=105.3
Q ss_pred CcEEEEEEEcCcchhH--HHHHHHHHHHhcccCC---CCceEEEEEECCeEEEEE-ccCCCCCCCeeEEecCCccCCHHH
Q 004199 129 PPVFMFVVDTCIIEEE--MSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVHE-LGGFGQIIPKTYVFKGSKDVSKDQ 202 (769)
Q Consensus 129 ~p~~vFvID~s~~~~~--l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~~~-l~~~~~~~~~~~v~~g~~~~~~~~ 202 (769)
+.-++||||.|.+... ++.++++++..++.++ .+.+||||+|++.+.+.- +. .
T Consensus 243 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~-~-------------------- 301 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS-E-------------------- 301 (741)
T ss_dssp EEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT-S--------------------
T ss_pred ceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeec-c--------------------
Confidence 4569999999998643 8888998888888764 468999999998664421 11 0
Q ss_pred HHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHh
Q 004199 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL 282 (769)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll 282 (769)
. . ...++.+.+.|++|+.. . ......+.+|.||..|..+|
T Consensus 302 ----~-----------------------~---------~~~~~~~~~~i~~l~~~---~-~~~~ggT~~~~aL~~a~~~l 341 (741)
T 3hrz_D 302 ----A-----------------------D---------SSNADWVTKQLNEINYE---D-HKLKSGTNTKKALQAVYSMM 341 (741)
T ss_dssp ----G-----------------------G---------GGCHHHHHHHHTTCCGG---G-GSSSCCCCHHHHHHHHHHHH
T ss_pred ----c-----------------------C---------CcCHHHHHHHHHhcccc---c-ccCCCChHHHHHHHHHHHHH
Confidence 0 0 01133455666666521 0 00234678999999999998
Q ss_pred hccC-CCCC------cEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEE
Q 004199 283 GACV-PGSG------ARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLF 355 (769)
Q Consensus 283 ~~~~-~~~g------grI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf 355 (769)
.... ...+ -.|+++++|-++.|..-.... +.+++..++ .+.++.+.+.||.|..+
T Consensus 342 ~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~---~~i~~~~~~---------------~~~a~~~~~~gi~i~~i 403 (741)
T 3hrz_D 342 SWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVI---DEIRDLLYI---------------GKDRKNPREDYLDVYVF 403 (741)
T ss_dssp CCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHH---HHHHHHTTC---------------SSCTTCCCGGGEEEEEE
T ss_pred hhhhhccccchhccCeEEEEECCCccccCCCchHHH---HHHHHHhhc---------------ccccccccccCeeEEEE
Confidence 3100 0111 258899999988774111100 000000000 01122333456555555
Q ss_pred EecCCccChhhhhhhhhccCce--EEEeCCCC
Q 004199 356 ACALDQVGVAELKVAVEKTGGL--VVLSDSFG 385 (769)
Q Consensus 356 ~~~~~~~~l~~m~~l~~~TGG~--v~~~~~f~ 385 (769)
..+ +.++-.+|..|+..+||. ++..++++
T Consensus 404 gvG-~~~~~~~L~~ia~~~~g~~~~~~~~~~~ 434 (741)
T 3hrz_D 404 GVG-PLVNQVNINALASKKDNEQHVFKVKDME 434 (741)
T ss_dssp ECS-SSCCHHHHHHHSCCCTTCCCEECBSSHH
T ss_pred eCC-CcCCHHHHHHHhcCCCCcceEEEeCCHH
Confidence 443 348889999999999995 77776654
No 32
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.36 E-value=0.0035 Score=60.30 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=88.9
Q ss_pred CCcEEEEEEEcCcchh--HHHHHHHHHHHhcccCC---CCceEEEEEECCeEEEE-EccCCCCCCCeeEEecCCccCCHH
Q 004199 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLP---DNSLVGLITFGTLVQVH-ELGGFGQIIPKTYVFKGSKDVSKD 201 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp---~~~~VglITfd~~V~~~-~l~~~~~~~~~~~v~~g~~~~~~~ 201 (769)
.+.-++||||.|.+.. +++.+++.++..++.++ ++.+||+|+|++.++.. .+. .
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~-~------------------- 75 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQ-S------------------- 75 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT-S-------------------
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCC-C-------------------
Confidence 4678999999999864 48888999998888875 45899999999877542 111 0
Q ss_pred HHHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHH
Q 004199 202 QLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASL 281 (769)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~l 281 (769)
+- ...+..+...|++++. . ...+.+|.||..|...
T Consensus 76 ----------------------------------~~---~~~~~~~~~~i~~l~~-----~---~g~T~~~~aL~~a~~~ 110 (178)
T 2xgg_A 76 ----------------------------------PN---AVDKQLAAHAVLDMPY-----K---KGSTNTSDGLKACKQI 110 (178)
T ss_dssp ----------------------------------GG---GSCHHHHHHHHHHCCC-----C---CCCCCHHHHHHHHHHH
T ss_pred ----------------------------------CC---ccCHHHHHHHHHhCCC-----C---CCCccHHHHHHHHHHH
Confidence 00 0013355566677653 1 1256899999999997
Q ss_pred hhcc----CCCCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEe
Q 004199 282 LGAC----VPGSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFAC 357 (769)
Q Consensus 282 l~~~----~~~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~ 357 (769)
+... -++....|++++.|.++.|. -..+.+..+.+.||.|-.+..
T Consensus 111 l~~~~~g~r~~~~~~iillTDG~~~~~~-------------------------------~~~~~~~~l~~~gi~v~~igv 159 (178)
T 2xgg_A 111 LFTGSRPGREHVPKLVIGMTDGESDSDF-------------------------------RTVRAAKEIRELGGIVTVLAV 159 (178)
T ss_dssp HHHCCCTTCTTSCEEEEEEESSCCCHHH-------------------------------HHSHHHHHHHHTTCEEEEEEC
T ss_pred hcCcccCCCCCCCEEEEEEcCCCCCCCc-------------------------------cHHHHHHHHHHCCCEEEEEEc
Confidence 6321 11234578888998765431 023456677778887766655
Q ss_pred cCCccChhhh
Q 004199 358 ALDQVGVAEL 367 (769)
Q Consensus 358 ~~~~~~l~~m 367 (769)
+ +.++-..|
T Consensus 160 G-~~~~~~~l 168 (178)
T 2xgg_A 160 G-HYVAAALV 168 (178)
T ss_dssp C---------
T ss_pred C-CcCCHHHH
Confidence 4 33444443
No 33
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=97.24 E-value=0.00039 Score=61.99 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=62.4
Q ss_pred ccceeEeecCCC--CCccccccccccccCeEEEEeCCcEEEEEECCCchHHHHccCCCCchhHHHHHhhhCcHHHHHHHH
Q 004199 628 IQPSLISYSFHS--GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIM 705 (769)
Q Consensus 628 i~P~L~~~~~~~--~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 705 (769)
-.|+||.+.... ....++++.++|.++.+||||+|..||+|+|+.++. .+. ......|+.|.
T Consensus 11 ~~~rL~~v~G~~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~-----------~Ek-----~~A~~~a~~i~ 74 (114)
T 1svq_A 11 YKPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSP-----------QEK-----NKAAEVARAID 74 (114)
T ss_dssp CCEEEEEEECTTSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCH-----------HHH-----HHHHHHHHHHH
T ss_pred CCcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCH-----------HHH-----HHHHHHHHHhh
Confidence 358999998532 346789999999999999999999999999998751 111 11234555565
Q ss_pred hcCCCCcEEEEEcCCC--ChHHHHH
Q 004199 706 KERFPVPRLVICDQHG--SQARFLL 728 (769)
Q Consensus 706 ~~R~~~p~~~~~~~g~--s~~r~l~ 728 (769)
.+|.....+.++++|. ..+.||.
T Consensus 75 ~er~g~~~i~vv~eg~~~E~~~Fw~ 99 (114)
T 1svq_A 75 AERKGLPKVEVFCETDSDIPAEFWK 99 (114)
T ss_dssp HHHTTCSEEEECCCCTTCCCHHHHH
T ss_pred hccCCCccEEEEeCCCcCCcHHHHH
Confidence 5666667899999998 6667764
No 34
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=96.93 E-value=0.0017 Score=80.09 Aligned_cols=163 Identities=14% Similarity=0.164 Sum_probs=102.5
Q ss_pred CCcEEEEEEEcCcchh--HHHHHHHHHHHhcccCCCC-ceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHHH
Q 004199 128 VPPVFMFVVDTCIIEE--EMSFLKSALSQAIDLLPDN-SLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLL 204 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~--~l~~~~~~l~~~l~~lp~~-~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l~ 204 (769)
.+.-.+||||.|.+.. .++.+++.++..++.+.++ .+||||+|++.+++.- . - .+..
T Consensus 129 ~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~-~-l------------------t~~~ 188 (1095)
T 3k6s_A 129 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHF-T-F------------------EEFR 188 (1095)
T ss_dssp CCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEE-C-S------------------HHHH
T ss_pred CCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEe-c-C------------------cccC
Confidence 3456899999999754 4899999999999988754 8999999998775431 1 0 1111
Q ss_pred HHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHHHh-h
Q 004199 205 EQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAASLL-G 283 (769)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~ll-~ 283 (769)
+. . .+...++.|+.. ...+.+|.||..|...+ .
T Consensus 189 ~~---------------------------~-----------~l~~ai~~i~~~--------gG~T~~g~AL~~a~~~lf~ 222 (1095)
T 3k6s_A 189 RS---------------------------S-----------NPLSLLASVHQL--------QGFTYTATAIQNVVHRLFH 222 (1095)
T ss_dssp SC---------------------------S-----------CGGGGTTTCCCC--------CSCBCHHHHHHHHHTTTTS
T ss_pred CH---------------------------H-----------HHHHHHhhhhcc--------cCCChHHHHHHHHHHhhcc
Confidence 00 0 011122333321 23578999999997744 2
Q ss_pred cc--CC-CCCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 004199 284 AC--VP-GSGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLDLFACALD 360 (769)
Q Consensus 284 ~~--~~-~~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvDlf~~~~~ 360 (769)
.. .+ +..-.|+++|+|.++..+. -+.+.+.++.+.||.|-.+..+.+
T Consensus 223 ~~~g~R~~~~kviIllTDG~~~~d~~------------------------------~~~~~a~~~r~~GI~i~aIGVG~~ 272 (1095)
T 3k6s_A 223 ASYGARRDAAKILIVITDGKKEGDSL------------------------------DYKDVIPMADAAGIIRYAIGVGLA 272 (1095)
T ss_dssp TTTTCCSSSEEEEEEEESSCCBSCSS------------------------------CHHHHHHHHHHHCEEECCEEBSSG
T ss_pred ccccCCCCCCeEEEEEeCCCcCCCch------------------------------hHHHHHHHHHHCCCEEEEEecccc
Confidence 10 01 1112577888885531110 034556777777877555555443
Q ss_pred ---ccChhhhhhhhhccCc-eEEEeCCCCc
Q 004199 361 ---QVGVAELKVAVEKTGG-LVVLSDSFGH 386 (769)
Q Consensus 361 ---~~~l~~m~~l~~~TGG-~v~~~~~f~~ 386 (769)
.++..+|..+|..++| .++..++|..
T Consensus 273 ~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 273 FQNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp GGSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred cccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 2689999999999887 7777777754
No 35
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=96.90 E-value=0.0058 Score=70.13 Aligned_cols=145 Identities=13% Similarity=0.058 Sum_probs=86.9
Q ss_pred cEEEEEEEcCcchh--------HHHHHHHHHHHhccc---CCCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccC
Q 004199 130 PVFMFVVDTCIIEE--------EMSFLKSALSQAIDL---LPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDV 198 (769)
Q Consensus 130 p~~vFvID~s~~~~--------~l~~~~~~l~~~l~~---lp~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~ 198 (769)
-..+|+||+|.++. .|+.+++++...++. ..++-+||||+|++.-.- +.+..
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~-----~plt~------------ 70 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTD-----NPLSG------------ 70 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCB-----STTCT------------
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCC-----Ccccc------------
Confidence 46899999998753 388888898888884 566789999999864311 11000
Q ss_pred CHHHHHHHhhcccCCCCCCCccccCcCCCCCccccccceeechhcHHHHHHHHHH-cCCCCCCCCCCCCCccchhHHHHH
Q 004199 199 SKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFLVPAFDCEFTLNSVLEE-LQKDPWPVPPDQRSTRCTGTALSI 277 (769)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~e~~~~i~~ll~~-l~~~~~~~~~~~~~~~~~G~Al~~ 277 (769)
+ +-+ + .. ..+.++......+..-|+. |.. + ....++|.||.+
T Consensus 71 ---d--~~y------~---------------~i---~vl~~l~~~~~~~l~~l~~~l~~-------~-~~~t~i~~al~~ 113 (565)
T 1jey_B 71 ---G--DQY------Q---------------NI---TVHRHLMLPDFDLLEDIESKIQP-------G-SQQADFLDALIV 113 (565)
T ss_dssp ---T--TCS------T---------------TE---EEEEEEECCCHHHHHHHHTTCCC-------C-SSCCCHHHHHHH
T ss_pred ---c--cCC------C---------------ce---EEeecCCCCCHHHHHHHHhhccC-------C-CccccHHHHHHH
Confidence 0 000 0 00 1223333221122223333 422 1 135689999999
Q ss_pred HHHHhhccCC--CCC-cEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHHhcCcEEE-
Q 004199 278 AASLLGACVP--GSG-ARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLVHQGHVLD- 353 (769)
Q Consensus 278 A~~ll~~~~~--~~g-grI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~~~~isvD- 353 (769)
|..+++.... +.+ -||++||.|--+.|. + -..++|..+.+.||.|+
T Consensus 114 A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~--------------------~----------~~~~~a~~l~~~gI~i~~ 163 (565)
T 1jey_B 114 SMDVIQHETIGKKFEKRHIEIFTDLSSRFSK--------------------S----------QLDIIIHSLKKCDISLQF 163 (565)
T ss_dssp HHHHHHHHSSSSCCSEEEEEEECCCCSCCCC--------------------T----------THHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHhhcccccccEEEEEeCCCCCCCH--------------------H----------HHHHHHHHHHhcCcEEEE
Confidence 9999985321 123 479999988543321 0 13567999999999999
Q ss_pred EEEec
Q 004199 354 LFACA 358 (769)
Q Consensus 354 lf~~~ 358 (769)
++.++
T Consensus 164 vig~g 168 (565)
T 1jey_B 164 FLPFS 168 (565)
T ss_dssp EESSC
T ss_pred EeccC
Confidence 65444
No 36
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=96.30 E-value=0.37 Score=52.90 Aligned_cols=209 Identities=13% Similarity=0.140 Sum_probs=116.3
Q ss_pred CCcEEEEEEEcCcchhH----HHHHHHHHHHhcccCCCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHH-
Q 004199 128 VPPVFMFVVDTCIIEEE----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQ- 202 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~- 202 (769)
.|-=.+|++|+|.++.+ ++.+...|...|..+..+.|+||.+|-+..- .|-.... .+.
T Consensus 110 ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v----------~P~~~~~-------p~~~ 172 (472)
T 3t3p_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPV----------SPYMYIS-------PPEA 172 (472)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSS----------TTTSCCC-------SHHH
T ss_pred CCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeecccc----------CccccCC-------hhhh
Confidence 67788999999999865 5566666777777788899999999854331 0111000 022
Q ss_pred HHHHhhcccCCCCCCCccccCcCCCCCcccc-ccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHH--
Q 004199 203 LLEQLNFFIKKPKPSTGVIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA-- 279 (769)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~-- 279 (769)
+..+-.- .. ..+ ..|. -+...++.+......+.+.++.-. .+.-.|+..+.+-+++|+
T Consensus 173 l~nPc~~-----~~-----~~c-----~p~f~fr~~l~LT~d~~~F~~~V~~~~iS----Gn~D~PEgg~dAl~qaavC~ 233 (472)
T 3t3p_B 173 LENPCYD-----MK-----TTC-----LPMFGYKHVLTLTDQVTRFNEEVKKQSVS----RNRDAPEGGFDAIMQATVCD 233 (472)
T ss_dssp HHCTTTT-----TT-----SCC-----CCCCSEEEEEEEESCHHHHHHHHHHCCCC----CCSSSSBCHHHHHHHHHHCH
T ss_pred hcCCCcc-----cc-----cCC-----CCCcceeEeeccCCCHHHHHHHHhhcccc----CCCCCCchHHHHHHHHhcch
Confidence 3221100 00 001 0122 223567777667777788776542 223456666666666664
Q ss_pred HHhhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCcCCCCCCCCCCCcccchhHH----HHHHHHHHHHhcCcEEE
Q 004199 280 SLLGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK----FYDALSKQLVHQGHVLD 353 (769)
Q Consensus 280 ~ll~~~~~~~ggrI~~F~sg~pt--~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~----fY~~la~~~~~~~isvD 353 (769)
.-+. .+...-|+++|++-.+- .|-|++...-..+..+-|-+-.. . +..+.. -...|+..+.+++|.+
T Consensus 234 ~~ig--WR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~---~-Y~~s~~~DYPSv~ql~~~l~e~nI~~- 306 (472)
T 3t3p_B 234 EKIG--WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDN---H-YSASTTMDYPSLGLMTEKLSQKNINL- 306 (472)
T ss_dssp HHHT--CCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTC---B-BTTTTTSCCCCHHHHHHHHHHTTCEE-
T ss_pred hhcC--CCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECCCC---c-ccccccCCCCCHHHHHHHHHhcCccE-
Confidence 3333 24456799998866554 68888776544444445533110 1 111111 2456777777887654
Q ss_pred EEEecCCccChhhhhhhhhcc-CceEEEe
Q 004199 354 LFACALDQVGVAELKVAVEKT-GGLVVLS 381 (769)
Q Consensus 354 lf~~~~~~~~l~~m~~l~~~T-GG~v~~~ 381 (769)
||+.+.....+++ .|+..- |+.+-..
T Consensus 307 IFAVt~~~~~~Y~--~L~~~ip~s~vg~L 333 (472)
T 3t3p_B 307 IFAVTENVVNLYQ--NYSELIPGTTVGVL 333 (472)
T ss_dssp EEEECGGGHHHHH--HHHHTSTTCEEEEC
T ss_pred EEEEeccchhHHH--HHHHhCCCceeeec
Confidence 7777766655543 344333 4444443
No 37
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=95.96 E-value=0.01 Score=63.60 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=54.1
Q ss_pred ccceeEeecCC-CC--Cccc----cccccccccCeEEEEeCC--cEEEEEECCCchHHHHccCCCCchhHHHHHhhhCcH
Q 004199 628 IQPSLISYSFH-SG--PEPA----LLDVAAIAADRILLLDSY--FTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPH 698 (769)
Q Consensus 628 i~P~L~~~~~~-~~--p~~v----~Ls~~~l~~d~i~llD~g--~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~~~ 698 (769)
-.|+||.++.. |. .+.+ +++.+.|.++.+||||+| ..||||+|+.++. .+. ..+.
T Consensus 246 ~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~---------~er-------~~A~ 309 (347)
T 1j72_A 246 QAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANE---------KER-------QAAL 309 (347)
T ss_dssp CCCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCH---------HHH-------HHHH
T ss_pred cCCEEEEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCH---------HHH-------HHHH
Confidence 46999999753 32 2344 899999999999999999 9999999998752 111 1123
Q ss_pred HHHHHHH--hcCCCCcEEEEEcCCCC
Q 004199 699 DDAGVIM--KERFPVPRLVICDQHGS 722 (769)
Q Consensus 699 ~~~~~l~--~~R~~~p~~~~~~~g~s 722 (769)
..|++.+ ..|.+...+.++.+|.-
T Consensus 310 ~~A~~y~~~~~rp~~~~i~~v~eG~E 335 (347)
T 1j72_A 310 QVAEGFISRMQYAPNTQVEILPQGRE 335 (347)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEETTCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCC
Confidence 3444433 24555666777777753
No 38
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=95.95 E-value=0.0074 Score=64.67 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=38.3
Q ss_pred ccceeEeecCC-CC--Cccc--cccccccccCeEEEEeCCcEEEEEECCCch
Q 004199 628 IQPSLISYSFH-SG--PEPA--LLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (769)
Q Consensus 628 i~P~L~~~~~~-~~--p~~v--~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~ 674 (769)
..|+||.++.. |. .+.+ +++.+.|.++.+||||+|..||||+|+.++
T Consensus 227 ~~~rLf~~s~~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as 278 (344)
T 2fh1_A 227 HPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQ 278 (344)
T ss_dssp CCCEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCC
T ss_pred cCCEEEEEEcCCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 67999998753 31 2233 688888999999999999999999999875
No 39
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=95.92 E-value=0.0097 Score=64.84 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=38.1
Q ss_pred ccceeEeecCC-CC--Cccc-cccccccccCeEEEEeCCcEEEEEECCCch
Q 004199 628 IQPSLISYSFH-SG--PEPA-LLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (769)
Q Consensus 628 i~P~L~~~~~~-~~--p~~v-~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~ 674 (769)
..|+||..+.. |. .+.+ +++-+.|.++.+||||+|..||||+|+.++
T Consensus 281 ~~~rLf~~s~~~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as 331 (398)
T 3fg7_A 281 ITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHAN 331 (398)
T ss_dssp CCCEEEEEECTTSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCC
T ss_pred ccCeeEEEEcCCCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 57999998763 31 1222 588889999999999999999999999876
No 40
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=95.76 E-value=0.45 Score=55.28 Aligned_cols=246 Identities=13% Similarity=0.159 Sum_probs=125.1
Q ss_pred CCcEEEEEEEcCcchhH-H---HHHHHHHHHhcccCCCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHH
Q 004199 128 VPPVFMFVVDTCIIEEE-M---SFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~-l---~~~~~~l~~~l~~lp~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (769)
.|.=.+|++|+|.++.. + +.+...|.+.|..+.++.|+||.+|-+..-. . .....| .++
T Consensus 110 ~pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~---P-~~~~~p-------------~~~ 172 (690)
T 3fcs_B 110 YPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVS---P-YMYISP-------------PEA 172 (690)
T ss_dssp CCEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSST---T-TSCCCS-------------TTT
T ss_pred CCccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccC---C-ccccCh-------------hhh
Confidence 66788999999999865 4 4444555555666778999999999764411 1 000000 111
Q ss_pred HHHhhcccCCCCCCCccccCcCCCCCcccc-ccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHH--H
Q 004199 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--S 280 (769)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~--~ 280 (769)
...|-....+.+ ..|. -+-..++.+....+.+.+..+... .+.-.|+..+-+.+++|+ .
T Consensus 173 ---------~~~pc~~~~~~c-----~~~f~f~~~l~lt~~~~~f~~~v~~~~is----gn~D~PE~g~dAl~qa~~c~~ 234 (690)
T 3fcs_B 173 ---------LENPCYDMKTTC-----LPMFGYKHVLTLTDQVTRFNEEVKKQSVS----RNRDAPEGGFDAIMQATVCDE 234 (690)
T ss_dssp ---------TTCTTSSSSSCC-----CCCCSEEEEEEEESCHHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHH
T ss_pred ---------ccCCCcCCCCCC-----CCCccceeecccCCCHHHHHHHhhceecc----CCCCCCchHHHHHHHHhhccc
Confidence 001100000000 0122 122456776555666666554431 123456666655556653 3
Q ss_pred HhhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCcCCCCCCCCCCCcccchhHH--H--HHHHHHHHHhcCcEEEE
Q 004199 281 LLGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK--F--YDALSKQLVHQGHVLDL 354 (769)
Q Consensus 281 ll~~~~~~~ggrI~~F~sg~pt--~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~--f--Y~~la~~~~~~~isvDl 354 (769)
-+. .+...-|+++|++-.+- .|-|++...-..+..+-|.+.. .++..+.. | -.+|+..+.+++|.+ |
T Consensus 235 ~ig--Wr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~----~~y~~s~~~DypSi~ql~~~l~~~~i~~-i 307 (690)
T 3fcs_B 235 KIG--WRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSD----NHYSASTTMDYPSLGLMTEKLSQKNINL-I 307 (690)
T ss_dssp HHT--CCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTT----CBBGGGGTSCCCCHHHHHHHHHHTTCEE-E
T ss_pred ccC--CCCCceEEEEEECCCccccCCCccccceecCCCcceeecCC----CccccccccCCCCHHHHHHHHHHcCCeE-E
Confidence 343 24456799998876655 4777766554334444443321 11222222 1 467788888888844 6
Q ss_pred EEecCCccChhhhhhhhh-ccCceEEEeCCCCchhhHHHHHHHhhcCccCccceeeeEEEEEe-cCCceEEe
Q 004199 355 FACALDQVGVAELKVAVE-KTGGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINC-SKDIKVQG 424 (769)
Q Consensus 355 f~~~~~~~~l~~m~~l~~-~TGG~v~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~l~vr~-S~gl~v~~ 424 (769)
|+......++++ .|+. .+|+.+-.... +.+...+-+...+.. .....+|+... +++++|+-
T Consensus 308 favt~~~~~~y~--~l~~~i~~s~v~~l~~-dSsni~~li~~~y~~------i~s~v~l~~~~~p~~~~v~~ 370 (690)
T 3fcs_B 308 FAVTENVVNLYQ--NYSELIPGTTVGVLSM-DSSNVLQLIVDAYGK------IRSKVELEVRDLPEELSLSF 370 (690)
T ss_dssp EEEEGGGHHHHH--HHHHHSTTCEEEEECT-TCTTHHHHHHHHHHH------HTTCEEEEEESCCTTEEEEE
T ss_pred EEEeCCchhhHH--HHHhhcCCceeeeecc-ccHHHHHHHHHHHHh------hhcceeeeccCCCCcceEEE
Confidence 666665555543 3443 34555555543 232333333333322 12344555443 55666653
No 41
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=95.21 E-value=0.047 Score=58.47 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=64.4
Q ss_pred cceeEeecCCC--CCccccccccccccCeEEEEeCCcEEEEEECCCchHHHHccCCCCchhHHHHHhhhCcHHHHHHHH-
Q 004199 629 QPSLISYSFHS--GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIM- 705 (769)
Q Consensus 629 ~P~L~~~~~~~--~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~- 705 (769)
.|+||.+.... ...+|+++..+|.++-+||||+|..||+|+|+.++. .+. ..+...|+.|.
T Consensus 135 ~~rL~~v~G~~~v~~~eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~---------~Er-------~~A~~~a~~i~~ 198 (347)
T 1j72_A 135 VQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNI---------LER-------NKARDLALAIRD 198 (347)
T ss_dssp EEEEEEEECSSSCEEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCCH---------HHH-------HHHHHHHHHHHT
T ss_pred CcEEEEEECCCceEEEEEeeeHHHcCCCceEEEecCCEEEEEECCCCCH---------HHH-------HHHHHHHHHHHh
Confidence 58899997532 245788999999999999999999999999998651 111 11234566665
Q ss_pred hcCCCCcEEEEEcCCCChHHHHHhhhC
Q 004199 706 KERFPVPRLVICDQHGSQARFLLAKLN 732 (769)
Q Consensus 706 ~~R~~~p~~~~~~~g~s~~r~l~s~L~ 732 (769)
..|...+.++++++|...+.||. -|.
T Consensus 199 ~~~~g~~~v~~v~EG~E~~~Fw~-~LG 224 (347)
T 1j72_A 199 SERQGKAQVEIVTDGEEPAEMIQ-VLG 224 (347)
T ss_dssp TSCCSSCEEEEEETTCCCHHHHH-HHC
T ss_pred hccCCCceEEEEeCCCCHHHHHH-HhC
Confidence 45667888999999988888864 453
No 42
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=95.21 E-value=2.3 Score=46.96 Aligned_cols=282 Identities=12% Similarity=0.103 Sum_probs=145.3
Q ss_pred CCcEEEEEEEcCcchhH----HHHHHHHHHHhcccCCCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHH
Q 004199 128 VPPVFMFVVDTCIIEEE----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (769)
.|-=.+|++|+|.++.+ ++.+...|...|..+..+.|+||.+|-+..- + |-.. ...+++
T Consensus 131 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v---~-------P~~~-------~~p~~l 193 (503)
T 3v4v_B 131 YPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTV---L-------PFVS-------TVPSKL 193 (503)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSS---T-------TTSC-------CCHHHH
T ss_pred CceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeeccccc---C-------Cccc-------CCHHHh
Confidence 67788999999999865 5556666777777788899999999954331 1 1000 012333
Q ss_pred HHHhhcccCCCCCCCccccCcCCCCCcccc-ccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHH--H
Q 004199 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--S 280 (769)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~--~ 280 (769)
..+-. .....+ ..|. -+-+.++.+......+.+....-. .+...|+..+.+-+++|+ .
T Consensus 194 ~~PC~----------~~~~~c-----~p~f~fr~~l~LT~d~~~F~~~V~~~~iS----GnlD~PEggfDAlmQaavC~~ 254 (503)
T 3v4v_B 194 RHPCP----------TRLERC-----QSPFSFHHVLSLTGDAQAFEREVGRQSVS----GNLDSPEGGFDAILQAALCQE 254 (503)
T ss_dssp HCCSS----------CSSSCC-----CCCCSEEEEEEEESCSHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHH
T ss_pred cCCCc----------CCCCCC-----CCCcceEEEEEecCCHHHHHHHHhhcCcc----CCCCCCchHHHHHHHHhhccc
Confidence 32110 000000 0122 122456666555666666554431 123456666666666665 3
Q ss_pred HhhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCcCCCCCCCCCCCcccchhHH----HHHHHHHHHHhcCcEEEE
Q 004199 281 LLGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVK----FYDALSKQLVHQGHVLDL 354 (769)
Q Consensus 281 ll~~~~~~~ggrI~~F~sg~pt--~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~----fY~~la~~~~~~~isvDl 354 (769)
-+. .++ ..|+++|++-.+- .|-|++...-..+..+-|-+.. ..+..+.. -...|+..+.+++|. =|
T Consensus 255 ~Ig--WR~-a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~----~~Yt~s~~~DYPSv~ql~~kL~ennI~-~I 326 (503)
T 3v4v_B 255 QIG--WRN-VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSN----GLYSRSTEFDYPSVGQVAQALSAANIQ-PI 326 (503)
T ss_dssp HHT--CCS-SEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCTT----SBBGGGGGSCCCCHHHHHHHHHHHTEE-EE
T ss_pred ccC--CCc-ceEEEEEECCCCcCcCCCccccceecCCCCCeEECCC----CccccccccCCCCHHHHHHHHHhcCCe-EE
Confidence 343 233 6799999866544 6888776654444445553321 11222221 145677778888884 37
Q ss_pred EEecCCccChhhhhhhhhcc-CceEEEeCCCCchhhHHHHHHHhhcCccCccceeeeEEEEEe-cCCceEEeEEcCCccc
Q 004199 355 FACALDQVGVAELKVAVEKT-GGLVVLSDSFGHAVFKDSVRRVFHSGDYDLGLSSNGIFEINC-SKDIKVQGIIGPCASL 432 (769)
Q Consensus 355 f~~~~~~~~l~~m~~l~~~T-GG~v~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~l~vr~-S~gl~v~~~~G~~~~~ 432 (769)
|+......++++ .|++.- |+.+-.... +.+...+-+...+.. .....+|+... +++++|+-.- .|...
T Consensus 327 FAVt~~~~~~Y~--~L~~~ip~s~vg~Ls~-dSsNiv~LI~~aY~~------i~S~V~l~~~~~p~~l~v~y~s-~C~~~ 396 (503)
T 3v4v_B 327 FAVTSAALPVYQ--ELSKLIPKSAVGELSE-DSSNVVQLIMDAYNS------LSSTVTLEHSSLPPGVHISYES-QCEGP 396 (503)
T ss_dssp EEECSSSHHHHH--HHHTTSTTCEEEECCT-TSCTHHHHHHHHHHH------HHTCEEEECCCCCTTEEEEBCE-ECSSS
T ss_pred EEEcccchhHHH--HHHHhCCCceeeEccc-cchhHHHHHHHHHHH------hheEEEEecCCCCCceEEEEEE-ecCCC
Confidence 887777666554 444443 444444332 233333322222211 12344454433 5667776432 11110
Q ss_pred CCCCCCccccccccCCCCceeEecCCCCceEEEEEEEecC
Q 004199 433 EKKGPLCSDAVVGQGNTSAWKMCGLDKATSLCLVFEIVKK 472 (769)
Q Consensus 433 ~~~~~~vsd~~~g~~~~~~~~l~~~~~~~s~~~~~~~~~~ 472 (769)
.+. .| .....-+..++....++.|..++.-.
T Consensus 397 -~~~-------~~-~~~~~~~C~~v~ig~~v~F~v~v~~~ 427 (503)
T 3v4v_B 397 -EKR-------EG-KAEDRGQCNHVRINQTVTFWVSLQAT 427 (503)
T ss_dssp -CCC-------CC-CCBSSEEECSCCTTCEEEEEEEEEEC
T ss_pred -Ccc-------Cc-ccccCCcccCcccCCEEEEEEEEEee
Confidence 000 00 00112345667777788887777654
No 43
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=95.21 E-value=0.012 Score=63.62 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=37.9
Q ss_pred ccceeEeecCC-CC--Cccc--cccccccccCeEEEEeCCcEEEEEECCCch
Q 004199 628 IQPSLISYSFH-SG--PEPA--LLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (769)
Q Consensus 628 i~P~L~~~~~~-~~--p~~v--~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~ 674 (769)
..|+||..+.. |. .+.+ +++-+.|.++.+||||+|..||||+|+.++
T Consensus 268 ~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as 319 (371)
T 3fg6_A 268 HPPRLYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDAN 319 (371)
T ss_dssp SCCEEEEEECTTSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCC
T ss_pred cCcEEEEEEcCCCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 45999988763 32 2233 588889999999999999999999999876
No 44
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=94.72 E-value=0.72 Score=53.11 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=46.8
Q ss_pred ccchhHHHHHHHHHhhccCCC-CCcEEEEEecCCCCCCCcccccCCCCCCcCCCCCCCCCCCcccchhHHHHHHHHHHHH
Q 004199 268 TRCTGTALSIAASLLGACVPG-SGARILAFVGGPSTEGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAVKFYDALSKQLV 346 (769)
Q Consensus 268 ~~~~G~Al~~A~~ll~~~~~~-~ggrI~~F~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~~ 346 (769)
..++|.||.+|..+++...++ ..=+|++||.|--+.|. + .....-....|..+.
T Consensus 140 ~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~--------------------~-----~~~~~~~~~~a~~l~ 194 (609)
T 1jey_A 140 DYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN--------------------D-----SAKASRARTKAGDLR 194 (609)
T ss_dssp CCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTT--------------------C-----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCC--------------------c-----hHHHHHHHHHHHHHH
Confidence 568999999999999853222 24588999998433221 0 111223467899999
Q ss_pred hcCcEEEEEEecCC
Q 004199 347 HQGHVLDLFACALD 360 (769)
Q Consensus 347 ~~~isvDlf~~~~~ 360 (769)
..||.|.++.++.+
T Consensus 195 ~~gI~i~~igig~~ 208 (609)
T 1jey_A 195 DTGIFLDLMHLKKP 208 (609)
T ss_dssp HHTEEEEEEEBCCT
T ss_pred hcCcEEEEEecCCC
Confidence 99999999987653
No 45
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=94.51 E-value=0.14 Score=61.36 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=81.1
Q ss_pred CCcEEEEEEEcCcchh--------HHHHHHHHHHHhcccCC--CCceEEEEEECCeEEE---EEccCCCCCCCeeEEecC
Q 004199 128 VPPVFMFVVDTCIIEE--------EMSFLKSALSQAIDLLP--DNSLVGLITFGTLVQV---HELGGFGQIIPKTYVFKG 194 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~--------~l~~~~~~l~~~l~~lp--~~~~VglITfd~~V~~---~~l~~~~~~~~~~~v~~g 194 (769)
.+--.+||||+|.++. .++.++++++..++.|. ++.+||||+|++.+.. ..+. ....-....+.+.
T Consensus 223 ~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~-~~~~~~~g~~~n~ 301 (893)
T 2ww8_A 223 VPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVE-KGVADKNGKRLND 301 (893)
T ss_dssp CCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEE-CCEECTTCCEECC
T ss_pred CCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccc-ccccccccccccc
Confidence 5677999999999863 25677888888887663 4789999999986632 1111 0000000000000
Q ss_pred CccCCHHHHHHHhhcccCCCCCCCccccCcCCCCCccccccc-eeechhcHHHHHHHHHHcCCCCCCCCC----CCCCcc
Q 004199 195 SKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARF-LVPAFDCEFTLNSVLEELQKDPWPVPP----DQRSTR 269 (769)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-l~~~~e~~~~i~~ll~~l~~~~~~~~~----~~~~~~ 269 (769)
.-.+. +. ..++ ......| ..|+......+..+...|+........ .....+
T Consensus 302 ~~~w~-------~~-----~t~~------------t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT 357 (893)
T 2ww8_A 302 SLFWN-------YD-----QTSF------------TTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGAT 357 (893)
T ss_dssp CTTSC-------TT-----CCEE------------EEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSC
T ss_pred ccccc-------cc-----cccc------------cccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCC
Confidence 00000 00 0000 0000111 345554454566555555431000000 013457
Q ss_pred chhHHHHHHHHHhhccC-CCCCcEEEEEecCCCCCCC
Q 004199 270 CTGTALSIAASLLGACV-PGSGARILAFVGGPSTEGP 305 (769)
Q Consensus 270 ~~G~Al~~A~~ll~~~~-~~~ggrI~~F~sg~pt~Gp 305 (769)
.+|.||..|..+|.... +.....|++++.|.|+.+.
T Consensus 358 ~i~~AL~~A~~lL~~~~~~~~~kvIILLTDG~pt~~~ 394 (893)
T 2ww8_A 358 FTQKALMKADEILTQQARQNSQKVIFHITDGVPTMSY 394 (893)
T ss_dssp CHHHHHHHHHHHHHHHSCSSSEEEEEEEESSCCSEEC
T ss_pred hHHHHHHHHHHHHHhhcccCCCeEEEEEcCCCCCccc
Confidence 89999999999997322 1334468888899999654
No 46
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=94.49 E-value=0.041 Score=64.89 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=39.2
Q ss_pred hhccceeEeecCC-CC--Cccc--cccccccccCeEEEEeCCcEEEEEECCCch
Q 004199 626 VMIQPSLISYSFH-SG--PEPA--LLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (769)
Q Consensus 626 ~~i~P~L~~~~~~-~~--p~~v--~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~ 674 (769)
....|+||..+.. |. .+.+ +++-+.|.++.+||||+|..||||+|+.++
T Consensus 610 ~~~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~ 663 (729)
T 1d0n_A 610 DAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQ 663 (729)
T ss_dssp HHSCCEEEEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSC
T ss_pred cccCCeEEEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 3568999999853 32 1222 577888999999999999999999999876
No 47
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=94.44 E-value=4.8 Score=43.88 Aligned_cols=201 Identities=12% Similarity=0.125 Sum_probs=114.9
Q ss_pred CCcEEEEEEEcCcchhH----HHHHHHHHHHhcccCCCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHH
Q 004199 128 VPPVFMFVVDTCIIEEE----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (769)
.|-=.+|++|+|.++.+ ++.+...|...|..+..+.|+||..|-+..- .|-.+.. .+.+
T Consensus 121 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v----------~P~~~t~-------p~~~ 183 (454)
T 3vi3_B 121 YPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTV----------MPYISTT-------PAKL 183 (454)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSS----------TTTSCCS-------TTTT
T ss_pred CceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEecccc----------CCcccCC-------hHHh
Confidence 66778999999999765 5666667777777888899999999854321 0100000 0111
Q ss_pred HHHhhcccCCCCCCCccccCcCCCCCcccc-ccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHHH--
Q 004199 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAAS-- 280 (769)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~~-- 280 (769)
. .|..... .+ ..|. -+...++.+......+.+.++.-. .+.-.|+..+-+-+++|+-
T Consensus 184 ~----------nPC~~~~-~c-----~~~f~fr~~l~LT~d~~~F~~~V~~~~is----Gn~D~PEgg~DAl~Qaavc~~ 243 (454)
T 3vi3_B 184 R----------NPCTSEQ-NC-----TTPFSYKNVLSLTNKGEVFNELVGKQRIS----GNLDSPEGGFDAIMQVAVCGS 243 (454)
T ss_dssp T----------CCSCSSS-CC-----CCCCSEEEEEEEESCHHHHHHHHTTCCCC----CCSSSSBCHHHHHHHHHHCHH
T ss_pred c----------CCCcCcc-CC-----CCCcceeeeeecCCCHHHHHHHHhhcccc----CCCcCCchhHHHHHHHhcccc
Confidence 1 1100000 00 0122 123567777666677777665431 1234566666666666653
Q ss_pred HhhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCcCCCCCCCCCCCcccchhH----HHHHHHHHHHHhcCcEEEE
Q 004199 281 LLGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAV----KFYDALSKQLVHQGHVLDL 354 (769)
Q Consensus 281 ll~~~~~~~ggrI~~F~sg~pt--~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~----~fY~~la~~~~~~~isvDl 354 (769)
-+. .++ .-|+++|++-.+- .|.|++...-..+..+-|-+ +. .| ..+. .-...|+..+.+++|-+ |
T Consensus 244 ~ig--WR~-a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~--~~--~Y-t~s~~~DYPSv~ql~~~l~e~nI~~-I 314 (454)
T 3vi3_B 244 LIG--WRN-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLE--NN--MY-TMSHYYDYPSIAHLVQKLSENNIQT-I 314 (454)
T ss_dssp HHT--CCS-SEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEE--TT--EE-CCTTTSCCCCHHHHHHHHHHTTEEE-E
T ss_pred ccC--Ccc-ceEEEEEECCCCcCcCCCccccceecCCCCccEeC--CC--cc-cccccCCCCCHHHHHHHHHhcCCcE-E
Confidence 233 345 7899999866554 68888876655555555644 11 11 1111 12567888888887765 8
Q ss_pred EEecCCccChhhhhhhhhccCc
Q 004199 355 FACALDQVGVAELKVAVEKTGG 376 (769)
Q Consensus 355 f~~~~~~~~l~~m~~l~~~TGG 376 (769)
|+.+.....+++ .|++.-+|
T Consensus 315 FAVt~~~~~~Y~--~L~~~ip~ 334 (454)
T 3vi3_B 315 FAVTEEFQPVYK--ELKNLIPK 334 (454)
T ss_dssp EEEEGGGHHHHH--HHHHHSTT
T ss_pred EEEcCccchHHH--HHHHhCCC
Confidence 887777666654 44444333
No 48
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=93.59 E-value=0.13 Score=60.56 Aligned_cols=88 Identities=10% Similarity=0.112 Sum_probs=65.4
Q ss_pred ccceeEeecCCC--CCccccccccccccCeEEEEeCCcEEEEEECCCchHHHHccCCCCchhHHHHHhhhCcHHHHHHHH
Q 004199 628 IQPSLISYSFHS--GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVIM 705 (769)
Q Consensus 628 i~P~L~~~~~~~--~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 705 (769)
-.|+||.+.... ....|+++.++|.++.+||||+|..||+|.|+.++ ..+.. .+...|+.|+
T Consensus 132 ~~~rL~~vkG~~~v~~~eV~~s~~SLns~DvFILd~g~~iy~W~G~~s~-----------~~Er~-----kA~~~a~~i~ 195 (729)
T 1d0n_A 132 VVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSN-----------RFERL-----KATQVSKGIR 195 (729)
T ss_dssp CCCEEEEEECSSSCEEEEECSSGGGCCSSSEEEEECSSEEEEEECTTCC-----------HHHHH-----HHHHHHHHHH
T ss_pred CCcEEEEEECCCcEEEEEEeccHHHcCCCCeEEEEcCCEEEEEECCCCC-----------HHHHH-----HHHHHHHHHh
Confidence 358999997532 24678999999999999999999999999999865 22111 1234566676
Q ss_pred -hcCCCCcEEEEEcCCCChHHHHHhhhC
Q 004199 706 -KERFPVPRLVICDQHGSQARFLLAKLN 732 (769)
Q Consensus 706 -~~R~~~p~~~~~~~g~s~~r~l~s~L~ 732 (769)
.+|.....++++++|...+.||. -|.
T Consensus 196 ~~er~g~~~i~~v~Eg~e~~eFw~-~LG 222 (729)
T 1d0n_A 196 DNERSGRAQVSVFEEGAEPEAMLQ-VLG 222 (729)
T ss_dssp HHSGGGCSEEEEEETTCCCHHHHH-HHC
T ss_pred hhhcCCCccEEEecCCCChHHHHH-HcC
Confidence 36767788999999987778874 343
No 49
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=92.11 E-value=0.13 Score=51.52 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=38.7
Q ss_pred CCcEEEEEEEcCcchhH-HHHHHHHHHHhcccCC---CCceEEEEEECCe
Q 004199 128 VPPVFMFVVDTCIIEEE-MSFLKSALSQAIDLLP---DNSLVGLITFGTL 173 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~-l~~~~~~l~~~l~~lp---~~~~VglITfd~~ 173 (769)
.|.-++|+||+|.+... ++.+++++...+..++ +..+||+|+|++.
T Consensus 133 ~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 133 VALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp SCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 45678999999998755 9999999999988765 4689999999854
No 50
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=92.04 E-value=0.19 Score=53.59 Aligned_cols=78 Identities=14% Similarity=0.196 Sum_probs=54.3
Q ss_pred cceeEeecCCC----CCccccccccccccCeEEEEeCCcEEEEEECCCchHHHHccCCCCchhHHHHHhhhCcHHHHHHH
Q 004199 629 QPSLISYSFHS----GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPHDDAGVI 704 (769)
Q Consensus 629 ~P~L~~~~~~~----~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 704 (769)
.|+||.+..+. ...+|+++.++|.++.+||||+|..||+|+|+.++. .+. ......|+.+
T Consensus 124 ~~rL~~v~g~~~~~~~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~---------~er-------~~A~~~a~~l 187 (344)
T 2fh1_A 124 STRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASE---------AEK-------TGAQELLRVL 187 (344)
T ss_dssp SSEEEEEEECTTCCEEEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCCH---------HHH-------HHHHHHHHHT
T ss_pred CceEEEEECCCCCceEEEEecCchhhcCCCceEEEecCCEEEEEECCCCCH---------HHH-------HHHHHHHHHh
Confidence 57999998532 135778999999999999999999999999998652 111 0112233333
Q ss_pred HhcCCCCcEEEEEcCCCChHHHHH
Q 004199 705 MKERFPVPRLVICDQHGSQARFLL 728 (769)
Q Consensus 705 ~~~R~~~p~~~~~~~g~s~~r~l~ 728 (769)
+ ..+.++++|...+.||.
T Consensus 188 ---~---~~i~~v~EG~E~~~Fw~ 205 (344)
T 2fh1_A 188 ---R---AQPVQVAEGSEPDGFWE 205 (344)
T ss_dssp ---T---CCCEEEETTCCCHHHHH
T ss_pred ---C---CCcEEEeCCCCcHHHHH
Confidence 2 34577788877777764
No 51
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=91.50 E-value=0.33 Score=52.27 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=38.9
Q ss_pred cceeEeecCCC----CCccccccccccccCeEEEEeCC-cEEEEEECCCch
Q 004199 629 QPSLISYSFHS----GPEPALLDVAAIAADRILLLDSY-FTVVIFHGATIA 674 (769)
Q Consensus 629 ~P~L~~~~~~~----~p~~v~Ls~~~l~~d~i~llD~g-~~i~i~~G~~v~ 674 (769)
.|+||.+...+ ...+|+++.++|.++.+||||+| ..||+|.|+.++
T Consensus 165 ~~rL~~vrg~~~~~vr~~EV~~~~ssLns~d~FILd~~~~~iyvW~G~~ss 215 (371)
T 3fg6_A 165 PTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGAS 215 (371)
T ss_dssp CCEEEEEECCSSSCCEEEEECSSGGGCBTTSEEEEECTTSEEEEEECTTCC
T ss_pred ccEEEEEeccCCCceEEEEecCCHHHccCCCeEEEEcCCCeEEEEECCCCC
Confidence 58999997542 13568899999999999999999 999999999864
No 52
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=90.01 E-value=1 Score=52.16 Aligned_cols=209 Identities=14% Similarity=0.140 Sum_probs=109.9
Q ss_pred CCcEEEEEEEcCcchhH----HHHHHHHHHHhcccCCCCceEEEEEECCeEEEEEccCCCCCCCeeEEecCCccCCHHHH
Q 004199 128 VPPVFMFVVDTCIIEEE----MSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQL 203 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~----l~~~~~~l~~~l~~lp~~~~VglITfd~~V~~~~l~~~~~~~~~~~v~~g~~~~~~~~l 203 (769)
.|.=.+|++|+|.++.. ++.+...|...|..+.++.|+||.+|-+..- + |-.+.. .+.+
T Consensus 103 ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~---~-------P~~~~~-------p~~~ 165 (687)
T 3k6s_B 103 YPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTV---L-------PFVNTH-------PDKL 165 (687)
T ss_dssp CCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSS---T-------TSSCCS-------STTT
T ss_pred CceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeecccc---C-------CccccC-------chhc
Confidence 67788999999999865 4455556666677788899999999965431 1 100000 0111
Q ss_pred HHHhhcccCCCCCCCccccCcCCCCCcccc-ccceeechhcHHHHHHHHHHcCCCCCCCCCCCCCccchhHHHHHHH--H
Q 004199 204 LEQLNFFIKKPKPSTGVIAGVRDGLSSDTI-ARFLVPAFDCEFTLNSVLEELQKDPWPVPPDQRSTRCTGTALSIAA--S 280 (769)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~G~Al~~A~--~ 280 (769)
. .|-....... ..|+ -+...++.+....+.+.+..+... .+.-.|+..+-+.+++|+ .
T Consensus 166 ~----------~Pc~~~~~~c-----~~~f~f~~~l~lt~~~~~F~~~v~~~~is----gn~D~PE~g~dAl~qa~vc~~ 226 (687)
T 3k6s_B 166 R----------NPCPNKEKEC-----QPPFAFRHVLKLTNNSNQFQTEVGKQLIS----GNLDAPEGGLDAMMQVAACPE 226 (687)
T ss_dssp T----------CCCCSCCCCC-----CCCCSCEEEEEEESCSHHHHHHHHTSCCC----CCSSSSCCHHHHHHHHTTCHH
T ss_pred c----------CCCCCCCCCc-----CCcccceeecccCCCHHHHHHHHhhcccc----CCCCCCchHHHHHHHHhhccc
Confidence 1 1100000000 0122 122456666555666666665431 123446655655555553 3
Q ss_pred HhhccCCCCCcEEEEEecCCCC--CCCcccccCCCCCCcCCCCCCCCCCCcccchhH-HH--HHHHHHHHHhcCcEEEEE
Q 004199 281 LLGACVPGSGARILAFVGGPST--EGPAAIVSKNLSEPIRSHKDLDKDSAPHYHKAV-KF--YDALSKQLVHQGHVLDLF 355 (769)
Q Consensus 281 ll~~~~~~~ggrI~~F~sg~pt--~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~-~f--Y~~la~~~~~~~isvDlf 355 (769)
-+. .++ .-|+++|++-.+- .|-|++...-..+..+-|.+ .. .|..... +| -.+|+.++.+++|.+ ||
T Consensus 227 ~ig--Wr~-a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~--~~--~y~~s~~~DyPS~~ql~~~l~~~~I~~-if 298 (687)
T 3k6s_B 227 EIG--WRN-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLE--DN--LYKRSNEFDYPSVGQLAHKLAENNIQP-IF 298 (687)
T ss_dssp HHC--CCS-SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCS--SS--BCSSGGGSCCCCGGGHHHHHHHTTCBC-CE
T ss_pred ccC--Ccc-ceEEEEEECCCccccCCCccccceecCCCCccccC--CC--ccccccccCCCCHHHHHHHHHHcCCeE-EE
Confidence 443 244 7899998876554 57777665543444444432 11 1111111 11 245677777888844 66
Q ss_pred EecCCccChhhhhhhhh-ccCceEEEeC
Q 004199 356 ACALDQVGVAELKVAVE-KTGGLVVLSD 382 (769)
Q Consensus 356 ~~~~~~~~l~~m~~l~~-~TGG~v~~~~ 382 (769)
+......++++ .|+. .+|+.+-...
T Consensus 299 avt~~~~~~y~--~l~~~i~~s~v~~L~ 324 (687)
T 3k6s_B 299 AVTSRMVKTYE--KLTEIIPKSAVGELS 324 (687)
T ss_dssp EECGGGHHHHH--HHHHHSSSCCEEECC
T ss_pred EEeccchhhHH--HHHhhcCCceeeeec
Confidence 65555555543 4443 3455555543
No 53
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=89.37 E-value=9.2 Score=37.36 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=32.7
Q ss_pred CCcEEEEEEEcCcchhH-HHHHHHH---HHHhcccCCCCceEEEEEECCe
Q 004199 128 VPPVFMFVVDTCIIEEE-MSFLKSA---LSQAIDLLPDNSLVGLITFGTL 173 (769)
Q Consensus 128 ~~p~~vFvID~s~~~~~-l~~~~~~---l~~~l~~lp~~~~VglITfd~~ 173 (769)
.|-=.+|++|+|.++.. ++.+++. |.+.|+.+.++.|+||.+|-+.
T Consensus 2 ~pvDl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp CCEEEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred CceEEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 34567999999999765 4444444 4455555677899999999554
No 54
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=89.25 E-value=0.69 Score=52.43 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=24.1
Q ss_pred ccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCC
Q 004199 268 TRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEG 304 (769)
Q Consensus 268 ~~~~G~Al~~A~~ll~~~~~~~ggrI~~F~sg~pt~G 304 (769)
.+.+|.||..|...- .....|+++++|..+.|
T Consensus 444 gT~i~~aL~~a~~~~-----~~~~~iIliTDg~~~~g 475 (538)
T 1yvr_A 444 STDCALPMLWAQKTN-----TAADIFIVFTDCETNVE 475 (538)
T ss_dssp CCCTTHHHHHHHHTT-----CCCSEEEEEECCCCCSS
T ss_pred CCcHHHHHHHHHhcc-----CCCCEEEEEcCCCCCCC
Confidence 467888999887752 35588999999976654
No 55
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=86.79 E-value=0.24 Score=39.41 Aligned_cols=20 Identities=25% Similarity=0.911 Sum_probs=17.9
Q ss_pred CceEEecCCCCCCCCCcCCC
Q 004199 78 AKIWICPFCFQRNHFPPHYA 97 (769)
Q Consensus 78 ~~~w~C~~C~~~N~~p~~y~ 97 (769)
.-.|+|++|...|.+|..|.
T Consensus 15 ~~tWVCpICsfsN~v~s~fd 34 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFT 34 (76)
T ss_dssp CEEEECTTTCCEEEESSCCC
T ss_pred ccceECccccccCcCccccC
Confidence 46899999999999998884
No 56
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=83.66 E-value=0.22 Score=54.16 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=0.0
Q ss_pred cceeEeecCCC----CCccccccccccccCeEEEEeCCcEEEEEECCCch
Q 004199 629 QPSLISYSFHS----GPEPALLDVAAIAADRILLLDSYFTVVIFHGATIA 674 (769)
Q Consensus 629 ~P~L~~~~~~~----~p~~v~Ls~~~l~~d~i~llD~g~~i~i~~G~~v~ 674 (769)
.|+||.+.... .-.+|+++.++|.++.+||||+|..||+|.|+.++
T Consensus 178 ~~rLf~VrG~~~~~~ra~EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss 227 (398)
T 3fg7_A 178 STRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCS 227 (398)
T ss_dssp --------------------------------------------------
T ss_pred CcEEEEEECCCCCceEEEEecCCHHHccCCceEEEEeCCeEEEEeCCCCC
Confidence 47888886432 23578899999999999999999999999999875
No 57
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=74.04 E-value=0.96 Score=36.03 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.5
Q ss_pred CCCccCCCCCceecCccEEEcCCceEEecCCCCCCCC
Q 004199 56 YAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (769)
Q Consensus 56 ~~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N~~ 92 (769)
|-++||. |+++ .-.+.+.++-.|+ ||..-.+
T Consensus 2 Y~vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 2 YIIFRCD-CGRA----LYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEEEET-TSCC----EEEETTCSEEEET-TTEEEEC
T ss_pred eEEEECC-CCCE----EEEcCCCcEEECC-CCCeeee
Confidence 4478999 9996 5566777888999 9988655
No 58
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=71.22 E-value=1.1 Score=38.31 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=26.9
Q ss_pred CCccCCCCCceecCccEEEcCCceEEecCCCCCCCCCcCC
Q 004199 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHY 96 (769)
Q Consensus 57 ~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N~~p~~y 96 (769)
.|.+|.+|+--+ .+.-++.-+|+.|+..|-.++.|
T Consensus 66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp CCCBBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCCCE
T ss_pred ECcChhhCcCee-----cccCCCCCCCcCCCCCccCCcce
Confidence 579999999764 23335668999999999877665
No 59
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=68.68 E-value=1.1 Score=33.83 Aligned_cols=29 Identities=17% Similarity=0.603 Sum_probs=21.3
Q ss_pred CCccCCCCCceecCccEEEcCCceEEecCCCCC
Q 004199 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 57 ~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 89 (769)
..--|.+|+.++.- -.+.-+|.|++|.+.
T Consensus 32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 32 QTKFCARCGGRVSL----RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp CCEECTTSEEEEES----STTCEEEEEHHHHHH
T ss_pred CCeeecccCCEeee----cCCeEEEEehhhhhc
Confidence 45668899998764 345678999999643
No 60
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=65.15 E-value=7.7 Score=28.29 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=23.5
Q ss_pred CccCCCCCceecCccEEEcCCceEEecCCCCC
Q 004199 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 58 p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 89 (769)
...|..|++ .-..+|...+.++|..||..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 467999998 23567888889999999985
No 61
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=64.54 E-value=21 Score=35.42 Aligned_cols=44 Identities=14% Similarity=0.287 Sum_probs=35.9
Q ss_pred HHHHHHHhcCcEEEEEEecC-C---ccChhhhhhhhhccCceEEEeCC
Q 004199 340 ALSKQLVHQGHVLDLFACAL-D---QVGVAELKVAVEKTGGLVVLSDS 383 (769)
Q Consensus 340 ~la~~~~~~~isvDlf~~~~-~---~~~l~~m~~l~~~TGG~v~~~~~ 383 (769)
+.|..|.+.||.|..+.+.. + .-|..+|..+|..|||.-+....
T Consensus 29 ~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 29 EAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP 76 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG
T ss_pred HHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH
Confidence 46778889999999998843 3 45678999999999999999743
No 62
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=62.81 E-value=4 Score=33.51 Aligned_cols=30 Identities=20% Similarity=0.554 Sum_probs=23.0
Q ss_pred CccCCCCCceecCccEEEcCCceEEecCCCCCCC
Q 004199 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNH 91 (769)
Q Consensus 58 p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N~ 91 (769)
.-.|..|++- ..++...+.|.|..|+....
T Consensus 27 ~y~Cp~CG~~----~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGED----RVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCE----EEEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCc----ceeccCCCeEECCCCCCEec
Confidence 4579999983 34556678999999998753
No 63
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=61.05 E-value=13 Score=41.93 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=22.1
Q ss_pred ccchhHHHHHHHHHhhccCCCCCcEEEEEecCCCCCC
Q 004199 268 TRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEG 304 (769)
Q Consensus 268 ~~~~G~Al~~A~~ll~~~~~~~ggrI~~F~sg~pt~G 304 (769)
.+.++.||..|.... .....|+++++|--+.|
T Consensus 440 gTdi~~~l~~a~~~~-----~~~~~vIliTD~~~~~g 471 (535)
T 2nvo_A 440 GTDCAQPILWAAQER-----LDVDTFVVYTDNETWAG 471 (535)
T ss_dssp CCCTTHHHHHHHHTT-----CCCSEEEEEESSCCCCC
T ss_pred CccHHHHHHHHHHhc-----CCCCEEEEEeCCCccCC
Confidence 456777887775543 35688999999866554
No 64
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=56.75 E-value=4.5 Score=31.63 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=28.7
Q ss_pred CCCccCCCCCceecCccEEEcCCceEEecCCCCC
Q 004199 56 YAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 56 ~~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 89 (769)
..+..|.+|++--.|..+-+..|. ..||-|+..
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~ 39 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 39 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHH
Confidence 357899999999999999998877 999999843
No 65
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=49.28 E-value=3 Score=30.14 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=15.7
Q ss_pred ccCCCCCceecCc----cEEEcCCceEEecCCCCC
Q 004199 59 LRCRTCRSILNPF----SIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 59 ~rC~~C~aylNp~----~~~~~~~~~w~C~~C~~~ 89 (769)
-+|..|+-+..|- ..|..--..|+|+.|+..
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 3566676544431 222222334777777753
No 66
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=46.11 E-value=3.5 Score=34.11 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=19.8
Q ss_pred CCccCCCCCceecCc-----------cEEEcCCceEEecCCCCC
Q 004199 57 APLRCRTCRSILNPF-----------SIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 57 ~p~rC~~C~aylNp~-----------~~~~~~~~~w~C~~C~~~ 89 (769)
..-+|..|+-+..|- ..|+.--..|+|+.|+..
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 356788887555542 233333456888888764
No 67
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=45.22 E-value=5.4 Score=28.34 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=25.6
Q ss_pred CccCCCCCceecCccEEEcCCceEEecCCCCC
Q 004199 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 58 p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 89 (769)
|..|.+|++--.|..+-...|. -.||.||-.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 31 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 31 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHHH
Confidence 4679999999999999887776 889999853
No 68
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=44.81 E-value=6 Score=38.42 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=18.0
Q ss_pred CccCCCCCceecCccEEEcCCceEEecCCCCC
Q 004199 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 58 p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 89 (769)
.-+|..|+-+... ..-|+||+|+..
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 4689999866443 233999999975
No 69
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=40.95 E-value=4.8 Score=29.91 Aligned_cols=10 Identities=40% Similarity=1.371 Sum_probs=5.7
Q ss_pred ceEEecCCCC
Q 004199 79 KIWICPFCFQ 88 (769)
Q Consensus 79 ~~w~C~~C~~ 88 (769)
..|+|+.|+.
T Consensus 34 ~dw~CP~Cg~ 43 (52)
T 1yk4_A 34 DDWVCPLCGA 43 (52)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCCCCCC
Confidence 4466666654
No 70
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=40.62 E-value=17 Score=27.69 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=24.4
Q ss_pred CCCccCCCCCceecCccEEEcCCceEEecCCCCCCC--CCcCCCCCC
Q 004199 56 YAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNH--FPPHYASIT 100 (769)
Q Consensus 56 ~~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N~--~p~~y~~~~ 100 (769)
..+.+|.+|+.|-= +=+|+.||.... -|..|++-+
T Consensus 4 s~mr~C~~CgvYTL----------k~~CP~CG~~T~~~hParfSp~D 40 (60)
T 2apo_B 4 MRMKKCPKCGLYTL----------KEICPKCGEKTVIPKPPKFSLED 40 (60)
T ss_dssp CCCEECTTTCCEES----------SSBCSSSCSBCBCCCCCCCCTTC
T ss_pred hhceeCCCCCCEec----------cccCcCCCCcCCCCCCCCCCCCc
Confidence 45788999998832 345999997754 466676533
No 71
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.74 E-value=10 Score=28.01 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCccCCCCCceecCccEEEcCCceEEecCCCCCCCCC
Q 004199 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFP 93 (769)
Q Consensus 57 ~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N~~p 93 (769)
..-.|.+|++- .+.+.|.|-=||+.|--|
T Consensus 13 ~k~iCpkC~a~--------~~~gaw~CrKCG~~~lr~ 41 (51)
T 3j21_g 13 KKYVCLRCGAT--------NPWGAKKCRKCGYKRLRP 41 (51)
T ss_dssp SEEECTTTCCE--------ECTTCSSCSSSSSCCCEE
T ss_pred CCccCCCCCCc--------CCCCceecCCCCCccccc
Confidence 45679999996 235789999999986433
No 72
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=37.43 E-value=14 Score=22.37 Aligned_cols=26 Identities=27% Similarity=0.686 Sum_probs=21.5
Q ss_pred cCCCCCceecCccEEEcCCceEEecCC
Q 004199 60 RCRTCRSILNPFSIVDFAAKIWICPFC 86 (769)
Q Consensus 60 rC~~C~aylNp~~~~~~~~~~w~C~~C 86 (769)
.|-.|-.+=|-||--+ -|+.|-|.=|
T Consensus 2 ~cvscv~fgngfcgdn-cgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGDN-CGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEECS-SSCEEECSCC
T ss_pred cceEeEeecCccccCC-cCCcccccCC
Confidence 4888999999998755 5889999877
No 73
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=37.19 E-value=12 Score=33.03 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=26.2
Q ss_pred ccCCCCCceecCc----cEEEcCC---ceEEecCCCCCCCCC
Q 004199 59 LRCRTCRSILNPF----SIVDFAA---KIWICPFCFQRNHFP 93 (769)
Q Consensus 59 ~rC~~C~aylNp~----~~~~~~~---~~w~C~~C~~~N~~p 93 (769)
.-|++|++++=|- +.+..++ -.++|..||+...+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 4699999998776 3344432 477899999988776
No 74
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.67 E-value=12 Score=30.11 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=21.2
Q ss_pred ccCCCCCceecCccEEEcCCceEEecCCCCC
Q 004199 59 LRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 59 ~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 89 (769)
..|..|+-=+---|.+...+..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 4466666666666666655578999999754
No 75
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=36.60 E-value=6.6 Score=29.37 Aligned_cols=11 Identities=36% Similarity=1.177 Sum_probs=6.6
Q ss_pred ceEEecCCCCC
Q 004199 79 KIWICPFCFQR 89 (769)
Q Consensus 79 ~~w~C~~C~~~ 89 (769)
..|+|+.|+..
T Consensus 35 ~dw~CP~Cg~~ 45 (54)
T 4rxn_A 35 DDWVCPLCGVG 45 (54)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCcCCCCc
Confidence 45666666653
No 76
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=35.78 E-value=6.7 Score=29.11 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=4.6
Q ss_pred eEEecCCCCC
Q 004199 80 IWICPFCFQR 89 (769)
Q Consensus 80 ~w~C~~C~~~ 89 (769)
+|+|..||..
T Consensus 3 ~y~C~~CGyv 12 (52)
T 1e8j_A 3 IYVCTVCGYE 12 (52)
T ss_dssp CEECSSSCCC
T ss_pred cEEeCCCCeE
Confidence 3445555443
No 77
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.10 E-value=18 Score=26.47 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=18.9
Q ss_pred CccCCCCCc--eecCccEEEcCCceEEecCCCCC
Q 004199 58 PLRCRTCRS--ILNPFSIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 58 p~rC~~C~a--ylNp~~~~~~~~~~w~C~~C~~~ 89 (769)
--.|.+|++ ++-+ ...+|.|+=|+..
T Consensus 19 ~k~CP~CG~~~fm~~------~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMAD------HGDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEE------CSSEEECSSSCCE
T ss_pred cccCCCCCCceEEec------CCCeEECCCCCCE
Confidence 456899998 4332 3578999999864
No 78
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=34.50 E-value=7.7 Score=30.73 Aligned_cols=31 Identities=23% Similarity=0.547 Sum_probs=16.5
Q ss_pred ccCCCCCceecCc-----------cEEEcCCceEEecCCCCC
Q 004199 59 LRCRTCRSILNPF-----------SIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 59 ~rC~~C~aylNp~-----------~~~~~~~~~w~C~~C~~~ 89 (769)
-+|..|+=+..|- ..|..--..|+|+.|+..
T Consensus 8 y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 8 YECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp EEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred EEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 4666676554432 223333345777777764
No 79
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=33.76 E-value=6.4 Score=28.39 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=26.0
Q ss_pred CccCCCCCceecCccEEEcCCceEEecCCCCC
Q 004199 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 58 p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 89 (769)
...|.+|++--.|..+-...|. ..||-|+..
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 34 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGH-YLCNACGLY 34 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCC-ccchHHHHH
Confidence 4679999999999988888776 889999854
No 80
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=33.69 E-value=7.2 Score=29.29 Aligned_cols=9 Identities=44% Similarity=1.217 Sum_probs=4.6
Q ss_pred eEEecCCCC
Q 004199 80 IWICPFCFQ 88 (769)
Q Consensus 80 ~w~C~~C~~ 88 (769)
.|+|+.|+.
T Consensus 36 dw~CP~Cga 44 (55)
T 2v3b_B 36 DWVCPDCGV 44 (55)
T ss_dssp TCCCTTTCC
T ss_pred CCcCCCCCC
Confidence 455555554
No 81
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=32.52 E-value=7.2 Score=31.75 Aligned_cols=10 Identities=40% Similarity=0.992 Sum_probs=6.0
Q ss_pred ceEEecCCCC
Q 004199 79 KIWICPFCFQ 88 (769)
Q Consensus 79 ~~w~C~~C~~ 88 (769)
..|+|+.|+.
T Consensus 59 ddW~CPvCga 68 (81)
T 2kn9_A 59 DDWSCPDCGA 68 (81)
T ss_dssp TTCCCTTTCC
T ss_pred CCCcCCCCCC
Confidence 3466666665
No 82
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=30.96 E-value=10 Score=42.53 Aligned_cols=20 Identities=25% Similarity=0.911 Sum_probs=0.0
Q ss_pred CceEEecCCCCCCCCCcCCC
Q 004199 78 AKIWICPFCFQRNHFPPHYA 97 (769)
Q Consensus 78 ~~~w~C~~C~~~N~~p~~y~ 97 (769)
...|+|++|+..|++|..|.
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~ 134 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFT 134 (566)
T ss_dssp --------------------
T ss_pred ccceeccccccCCCCCCCCC
Confidence 56899999999999998874
No 83
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=28.35 E-value=16 Score=24.03 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=11.7
Q ss_pred ceEEecCCCCCCCC
Q 004199 79 KIWICPFCFQRNHF 92 (769)
Q Consensus 79 ~~w~C~~C~~~N~~ 92 (769)
+-|.|+.|+..|.-
T Consensus 4 gDW~C~~C~~~Nfa 17 (32)
T 2lk0_A 4 EDWLCNKCCLNNFR 17 (32)
T ss_dssp SEEECTTTCCEEET
T ss_pred CCCCcCcCcCCcCh
Confidence 56999999999853
No 84
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.34 E-value=19 Score=31.54 Aligned_cols=28 Identities=29% Similarity=0.832 Sum_probs=20.3
Q ss_pred CccCCCCCceecCccEEEcCCceE-EecCCCCCCC
Q 004199 58 PLRCRTCRSILNPFSIVDFAAKIW-ICPFCFQRNH 91 (769)
Q Consensus 58 p~rC~~C~aylNp~~~~~~~~~~w-~C~~C~~~N~ 91 (769)
-.+|.+|+..... ..... .||-|+..+.
T Consensus 73 ~~~C~~CG~~~e~------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 73 ELECKDCSHVFKP------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EEECSSSSCEECS------CCSTTCCCSSSSSCCC
T ss_pred eEEcCCCCCEEeC------CCCCCCcCccccCCCc
Confidence 4789999887655 23456 7999998863
No 85
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=25.83 E-value=20 Score=31.72 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=26.1
Q ss_pred ccCCCCCceecCc----cEEEcCC---ceEEecCCCCCCCCC
Q 004199 59 LRCRTCRSILNPF----SIVDFAA---KIWICPFCFQRNHFP 93 (769)
Q Consensus 59 ~rC~~C~aylNp~----~~~~~~~---~~w~C~~C~~~N~~p 93 (769)
.-|++|++++=|- +.+..++ -.++|..||+.-.+|
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 4699999998776 4444432 467899999987776
No 86
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=25.70 E-value=41 Score=25.37 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=22.7
Q ss_pred CccCCCCCceecCccEEEcCCceEEecCCCCC
Q 004199 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 58 p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 89 (769)
..+|..|+.- + ..+|...+-++|.-||..
T Consensus 11 ~~~Cp~C~~~--~-lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 11 RVTCPNHPDA--I-LVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CCSBTTBSSS--C-CEECSSSCCEECTTTCCE
T ss_pred cccCcCCCCC--c-eeEeCCCCeEEeCCCCCE
Confidence 4589999872 2 566777888999999976
No 87
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=24.89 E-value=17 Score=31.83 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=26.4
Q ss_pred CccCCCCCceecCccEEEcCCceEEecCCCCC
Q 004199 58 PLRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 58 p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 89 (769)
+..|.+|++.--|..+-+..| .+.||-|+..
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~ 35 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG-HYLCNACGLY 35 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS-CEECHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCC-CCcCcchhhh
Confidence 467999999999999998766 6999999843
No 88
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.18 E-value=79 Score=25.12 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=25.9
Q ss_pred CCCCCCCccCCCCCceecCccEEEcCCceE-----EecCCCCC
Q 004199 52 PILPYAPLRCRTCRSILNPFSIVDFAAKIW-----ICPFCFQR 89 (769)
Q Consensus 52 p~~~~~p~rC~~C~aylNp~~~~~~~~~~w-----~C~~C~~~ 89 (769)
|.-.....+|..|+-.|-+--.+...++.| +|.-|+..
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~ 51 (80)
T 2dj7_A 9 PIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVI 51 (80)
T ss_dssp CCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCB
T ss_pred CcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCC
Confidence 433345689999999886433344556777 88888764
No 89
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=23.77 E-value=34 Score=24.47 Aligned_cols=19 Identities=26% Similarity=0.551 Sum_probs=15.2
Q ss_pred ceEEecCCCCCCCCCcCCC
Q 004199 79 KIWICPFCFQRNHFPPHYA 97 (769)
Q Consensus 79 ~~w~C~~C~~~N~~p~~y~ 97 (769)
..|+|.-|++.|.-...|+
T Consensus 12 D~WkC~~C~~~N~Pl~r~C 30 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHC 30 (46)
T ss_dssp GCEECTTTCCEECSSCSSC
T ss_pred ceEecccccccCCCccchh
Confidence 5799999999987555664
No 90
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.79 E-value=16 Score=33.67 Aligned_cols=31 Identities=16% Similarity=0.441 Sum_probs=17.6
Q ss_pred cCCCCCceecCccEE-EcCCceEEecCCCCCC
Q 004199 60 RCRTCRSILNPFSIV-DFAAKIWICPFCFQRN 90 (769)
Q Consensus 60 rC~~C~aylNp~~~~-~~~~~~w~C~~C~~~N 90 (769)
.|..|+-.+.--|.+ ......|.|.+|...-
T Consensus 87 ~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~r 118 (153)
T 2zet_C 87 QCLECSLFVCKSCSHAHPEEQGWLCDPCHLAR 118 (153)
T ss_dssp ECTTTCCEECGGGEECCSSSSSCEEHHHHHHH
T ss_pred cCCCCCchhhcccccccCCCCcEeeHHHHHHH
Confidence 344444444433332 2346789999998654
No 91
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=22.62 E-value=28 Score=22.46 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=13.5
Q ss_pred CceEEecCCCCCCCCCc
Q 004199 78 AKIWICPFCFQRNHFPP 94 (769)
Q Consensus 78 ~~~w~C~~C~~~N~~p~ 94 (769)
+..|.|+.|...|.-..
T Consensus 4 ~~~W~C~~CTf~N~~~~ 20 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPGT 20 (31)
T ss_dssp SCCEECSSSCCEECSSC
T ss_pred CccccCCcccccCCCCC
Confidence 46899999999997543
No 92
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=22.25 E-value=23 Score=23.47 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=11.7
Q ss_pred ceEEecCCCCCCCC
Q 004199 79 KIWICPFCFQRNHF 92 (769)
Q Consensus 79 ~~w~C~~C~~~N~~ 92 (769)
.-|+|+-|+..|--
T Consensus 5 gDW~C~~C~~~Nfa 18 (33)
T 2k1p_A 5 NDWQCKTCSNVNWA 18 (33)
T ss_dssp SSCBCSSSCCBCCT
T ss_pred CCcccCCCCCcccc
Confidence 45999999999954
No 93
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=22.13 E-value=36 Score=24.83 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=15.5
Q ss_pred CceEEecCCCCCCCCCcCCC
Q 004199 78 AKIWICPFCFQRNHFPPHYA 97 (769)
Q Consensus 78 ~~~w~C~~C~~~N~~p~~y~ 97 (769)
...|+|.-|++.|.-...|+
T Consensus 9 eD~WkC~~C~k~N~Pl~ryC 28 (53)
T 2cr8_A 9 EDEWQCTECKKFNSPSKRYC 28 (53)
T ss_dssp SCCEECSSSCCEECSSCCBC
T ss_pred cceeecccccccCCCccchh
Confidence 35799999999987556664
No 94
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=21.78 E-value=16 Score=34.85 Aligned_cols=28 Identities=14% Similarity=0.461 Sum_probs=19.0
Q ss_pred CCccCCCCCc-eecCccEEEcCCceEEecCCC
Q 004199 57 APLRCRTCRS-ILNPFSIVDFAAKIWICPFCF 87 (769)
Q Consensus 57 ~p~rC~~C~a-ylNp~~~~~~~~~~w~C~~C~ 87 (769)
...+|++|++ |+...- +....++|+||+
T Consensus 133 ~l~~C~~Cgg~fv~~~~---~~~~~f~Cp~C~ 161 (192)
T 2avu_E 133 QLSSCNCCGGNFITHAH---QPVGSFACSLCQ 161 (192)
T ss_dssp EEEECTTTCCEEEEESS---CCSSCCCCTTC-
T ss_pred eeCcCCCCCCCeeCccC---CCCCCCcCCCCC
Confidence 4688999987 333222 245789999999
No 95
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=21.67 E-value=24 Score=32.90 Aligned_cols=35 Identities=9% Similarity=-0.011 Sum_probs=27.4
Q ss_pred CccCCCCCc-----eecCccEEEcC------CceEEecCCCCCCCC
Q 004199 58 PLRCRTCRS-----ILNPFSIVDFA------AKIWICPFCFQRNHF 92 (769)
Q Consensus 58 p~rC~~C~a-----ylNp~~~~~~~------~~~w~C~~C~~~N~~ 92 (769)
-++|.+|+- |+|++-+.+-. +-.|+|.+|++.+.+
T Consensus 37 kvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 37 NIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp EEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred EEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 389999984 68888777632 457999999998865
No 96
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.50 E-value=32 Score=30.88 Aligned_cols=33 Identities=18% Similarity=0.685 Sum_probs=20.0
Q ss_pred ccCCCCCceecCccEEEc----CCceEEecCCCCCCC
Q 004199 59 LRCRTCRSILNPFSIVDF----AAKIWICPFCFQRNH 91 (769)
Q Consensus 59 ~rC~~C~aylNp~~~~~~----~~~~w~C~~C~~~N~ 91 (769)
..|..|+-.+-.-|.... ....|.|.+|...-.
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 445555555555444432 346899999987643
No 97
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=21.33 E-value=43 Score=29.56 Aligned_cols=29 Identities=24% Similarity=0.639 Sum_probs=21.8
Q ss_pred CCccCCCCCceecCccEEEcCCceEEecCCCCCC
Q 004199 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRN 90 (769)
Q Consensus 57 ~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N 90 (769)
..+.|.+|.+ .|.--| +..|+|+-|++.-
T Consensus 26 ~lP~CP~C~s---eytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNS---EYTYED--GALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCC---CCCEEC--SSSEEETTTTEEE
T ss_pred cCCCCCCCCC---cceEec--CCeEECCcccccc
Confidence 4578999986 454444 6789999999864
No 98
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=20.80 E-value=29 Score=23.25 Aligned_cols=19 Identities=21% Similarity=0.573 Sum_probs=14.4
Q ss_pred CceEEecCCCCCCCCCcCC
Q 004199 78 AKIWICPFCFQRNHFPPHY 96 (769)
Q Consensus 78 ~~~w~C~~C~~~N~~p~~y 96 (769)
.+.|.|..|...|..-..+
T Consensus 5 ~G~W~C~~C~v~N~~~~~k 23 (34)
T 3gj5_B 5 SGSWDCEVCLVQNKADSTK 23 (34)
T ss_dssp -CCEECTTTCCEECSSCSB
T ss_pred CCceECCeeEeECccccCE
Confidence 4689999999999764433
No 99
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.60 E-value=86 Score=24.63 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=24.1
Q ss_pred CCccCCCCCceecCccEEEcCCceEEecCCCCCCCC
Q 004199 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (769)
Q Consensus 57 ~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N~~ 92 (769)
+++.|..|++=+ .++...+.-+|..|+..-++
T Consensus 7 ~iL~CP~ck~~L----~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 7 DILVCPVCKGRL----EFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCCBCTTTCCBE----EEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcC----EEeCCCCEEEcCCCCceecC
Confidence 568999999943 34555678999999977554
No 100
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=20.50 E-value=46 Score=31.18 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=19.0
Q ss_pred ccCCCCCceecCccEEEcCCceEEecCCCCC
Q 004199 59 LRCRTCRSILNPFSIVDFAAKIWICPFCFQR 89 (769)
Q Consensus 59 ~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~ 89 (769)
+-|..|.-=+- +..++.|.|+-|+..
T Consensus 43 ~ACp~CnKKV~-----~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCTCQGKSVL-----KYHGDSFFCESCQQF 68 (172)
T ss_dssp EECTTSCCCEE-----EETTTEEEETTTTEE
T ss_pred hhchhhCCEee-----eCCCCeEECCCCCCC
Confidence 66888755221 256789999999998
No 101
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=20.34 E-value=22 Score=29.21 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=12.7
Q ss_pred ceEEecCCCCCCCCC
Q 004199 79 KIWICPFCFQRNHFP 93 (769)
Q Consensus 79 ~~w~C~~C~~~N~~p 93 (769)
..|.|+||++.+.+-
T Consensus 22 t~F~CPfCnh~~sV~ 36 (85)
T 1wii_A 22 TQFTCPFCNHEKSCD 36 (85)
T ss_dssp SCCCCTTTCCSSCEE
T ss_pred CeEcCCCCCCCCeEE
Confidence 679999999998763
No 102
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.14 E-value=91 Score=24.25 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=23.9
Q ss_pred CCccCCCCCceecCccEEEcCCceEEecCCCCCCCC
Q 004199 57 APLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHF 92 (769)
Q Consensus 57 ~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N~~ 92 (769)
++..|..|++ |. .++...+.-+|..|+..-++
T Consensus 9 eiL~CP~ck~---~L-~~~~~~g~LvC~~c~~~YPI 40 (67)
T 2jny_A 9 EVLACPKDKG---PL-RYLESEQLLVNERLNLAYRI 40 (67)
T ss_dssp CCCBCTTTCC---BC-EEETTTTEEEETTTTEEEEE
T ss_pred HHhCCCCCCC---cC-eEeCCCCEEEcCCCCccccC
Confidence 5789999999 32 34555678999999876554
Done!