Query 004202
Match_columns 768
No_of_seqs 476 out of 3774
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 19:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 1E-88 2.3E-93 730.2 39.9 423 337-764 4-427 (428)
2 KOG0458 Elongation factor 1 al 100.0 9.1E-82 2E-86 696.2 39.9 428 335-764 172-602 (603)
3 PLN00043 elongation factor 1-a 100.0 8.1E-79 1.8E-83 686.7 47.4 424 337-765 4-431 (447)
4 PTZ00141 elongation factor 1- 100.0 1.5E-77 3.3E-82 676.7 48.4 425 337-766 4-432 (446)
5 PRK12317 elongation factor 1-a 100.0 7.3E-75 1.6E-79 653.8 47.3 419 337-767 3-424 (425)
6 TIGR00483 EF-1_alpha translati 100.0 3.1E-74 6.8E-79 648.8 48.7 421 337-766 4-425 (426)
7 KOG0459 Polypeptide release fa 100.0 3E-73 6.5E-78 602.6 30.2 424 336-765 75-501 (501)
8 PRK05124 cysN sulfate adenylyl 100.0 2E-69 4.4E-74 614.9 45.6 410 337-764 24-438 (474)
9 COG2895 CysN GTPases - Sulfate 100.0 5.6E-70 1.2E-74 570.9 35.3 410 337-764 3-416 (431)
10 TIGR02034 CysN sulfate adenyly 100.0 3.1E-69 6.8E-74 603.9 43.4 401 341-760 1-406 (406)
11 PRK05506 bifunctional sulfate 100.0 6.8E-66 1.5E-70 606.6 45.8 409 338-765 22-435 (632)
12 PLN03126 Elongation factor Tu; 100.0 9.2E-63 2E-67 558.6 42.7 390 336-765 77-478 (478)
13 PRK12735 elongation factor Tu; 100.0 3.3E-62 7.1E-67 545.8 42.9 380 335-765 7-396 (396)
14 CHL00071 tufA elongation facto 100.0 3.7E-62 8E-67 547.5 42.8 390 336-765 8-409 (409)
15 PRK00049 elongation factor Tu; 100.0 1E-61 2.2E-66 541.6 44.1 379 336-765 8-396 (396)
16 PRK12736 elongation factor Tu; 100.0 1.5E-61 3.3E-66 540.2 43.0 377 336-765 8-394 (394)
17 TIGR00485 EF-Tu translation el 100.0 4.7E-61 1E-65 536.4 42.3 376 336-764 8-393 (394)
18 PLN03127 Elongation factor Tu; 100.0 1.3E-59 2.8E-64 530.3 42.7 375 336-764 57-446 (447)
19 COG0050 TufB GTPases - transla 100.0 7.9E-56 1.7E-60 454.0 32.2 377 336-765 8-394 (394)
20 KOG0460 Mitochondrial translat 100.0 2.1E-56 4.5E-61 465.6 25.4 379 337-765 51-438 (449)
21 PTZ00327 eukaryotic translatio 100.0 5.1E-53 1.1E-57 476.2 38.0 343 338-762 32-451 (460)
22 COG5258 GTPBP1 GTPase [General 100.0 2.2E-53 4.8E-58 448.4 23.8 460 231-764 12-527 (527)
23 PRK10512 selenocysteinyl-tRNA- 100.0 1.2E-50 2.5E-55 472.7 39.3 338 341-766 1-343 (614)
24 PRK04000 translation initiatio 100.0 1.6E-49 3.6E-54 445.1 38.2 340 338-760 7-410 (411)
25 TIGR03680 eif2g_arch translati 100.0 2.2E-49 4.7E-54 444.0 38.1 340 338-760 2-405 (406)
26 TIGR00475 selB selenocysteine- 100.0 2.3E-47 5.1E-52 443.6 39.1 336 341-763 1-338 (581)
27 KOG0463 GTP-binding protein GP 100.0 2.3E-49 5E-54 415.7 18.8 376 325-766 117-549 (641)
28 KOG1143 Predicted translation 100.0 1.3E-48 2.8E-53 410.1 22.4 467 231-768 58-587 (591)
29 COG3276 SelB Selenocysteine-sp 100.0 7.4E-46 1.6E-50 401.9 29.1 296 342-697 2-300 (447)
30 COG5257 GCD11 Translation init 100.0 7.2E-39 1.6E-43 332.9 30.7 341 338-762 8-413 (415)
31 KOG0052 Translation elongation 100.0 1.7E-39 3.8E-44 348.7 11.5 369 337-767 4-375 (391)
32 TIGR01394 TypA_BipA GTP-bindin 100.0 8.5E-36 1.8E-40 346.6 28.4 277 341-655 2-290 (594)
33 KOG0461 Selenocysteine-specifi 100.0 9.2E-35 2E-39 303.6 21.8 347 339-739 6-381 (522)
34 cd01883 EF1_alpha Eukaryotic e 100.0 2.7E-34 5.9E-39 296.4 22.3 216 342-561 1-218 (219)
35 PRK10218 GTP-binding protein; 100.0 2.6E-33 5.6E-38 325.6 29.4 278 339-654 4-293 (607)
36 TIGR01393 lepA GTP-binding pro 100.0 3.9E-33 8.6E-38 325.0 28.0 266 340-655 3-279 (595)
37 PRK05433 GTP-binding protein L 100.0 3.4E-33 7.4E-38 325.8 27.2 267 339-655 6-283 (600)
38 cd04166 CysN_ATPS CysN_ATPS su 100.0 4.3E-33 9.3E-38 285.2 22.0 207 342-561 1-207 (208)
39 COG1217 TypA Predicted membran 100.0 4.9E-32 1.1E-36 292.9 28.1 280 338-655 3-294 (603)
40 KOG0462 Elongation factor-type 100.0 5.8E-33 1.3E-37 305.4 20.9 265 339-653 59-332 (650)
41 COG0481 LepA Membrane GTPase L 100.0 2.9E-32 6.3E-37 295.6 22.0 267 338-654 7-284 (603)
42 cd01884 EF_Tu EF-Tu subfamily. 100.0 4.8E-31 1.1E-35 267.7 20.4 192 340-561 2-194 (195)
43 PRK05306 infB translation init 100.0 1.8E-29 3.8E-34 299.6 28.1 248 336-651 286-542 (787)
44 TIGR00487 IF-2 translation ini 100.0 2.5E-29 5.5E-34 291.9 28.7 247 336-650 83-339 (587)
45 PRK07560 elongation factor EF- 100.0 7.1E-29 1.5E-33 296.8 24.8 286 339-653 19-375 (731)
46 PRK00007 elongation factor G; 100.0 8.3E-28 1.8E-32 286.1 26.5 281 339-653 9-394 (693)
47 PRK12739 elongation factor G; 100.0 1.2E-27 2.6E-32 284.8 25.9 270 339-653 7-391 (691)
48 CHL00189 infB translation init 100.0 1.7E-27 3.7E-32 280.4 25.7 247 337-650 241-499 (742)
49 PF00009 GTP_EFTU: Elongation 100.0 5E-28 1.1E-32 243.5 17.2 181 338-558 1-185 (188)
50 TIGR00484 EF-G translation elo 100.0 4.2E-27 9E-32 280.3 26.2 281 339-653 9-392 (689)
51 PRK00741 prfC peptide chain re 100.0 9.7E-27 2.1E-31 267.8 27.3 277 339-653 9-380 (526)
52 KOG1145 Mitochondrial translat 100.0 3.2E-27 6.9E-32 260.0 20.6 240 334-634 147-392 (683)
53 PRK04004 translation initiatio 100.0 1.2E-26 2.5E-31 270.2 26.2 245 338-638 4-316 (586)
54 COG0480 FusA Translation elong 100.0 2.9E-27 6.3E-32 276.8 21.2 271 338-653 8-392 (697)
55 TIGR00503 prfC peptide chain r 99.9 1.6E-26 3.5E-31 266.0 26.3 275 338-653 9-381 (527)
56 TIGR00491 aIF-2 translation in 99.9 3.3E-26 7.1E-31 265.6 26.0 253 339-649 3-323 (590)
57 KOG0466 Translation initiation 99.9 1.8E-27 3.8E-32 245.9 12.3 344 339-762 37-458 (466)
58 COG0532 InfB Translation initi 99.9 3.5E-26 7.5E-31 254.8 23.0 233 338-634 3-246 (509)
59 PRK13351 elongation factor G; 99.9 4.9E-26 1.1E-30 271.4 24.5 270 339-653 7-390 (687)
60 PRK12740 elongation factor G; 99.9 5.3E-26 1.1E-30 270.5 23.7 263 346-653 1-373 (668)
61 TIGR00490 aEF-2 translation el 99.9 2.2E-26 4.7E-31 274.9 20.2 286 339-653 18-374 (720)
62 PLN00116 translation elongatio 99.9 1.5E-24 3.2E-29 262.7 23.6 288 339-653 18-471 (843)
63 COG4108 PrfC Peptide chain rel 99.9 9.3E-25 2E-29 235.9 16.0 275 340-652 12-381 (528)
64 PTZ00416 elongation factor 2; 99.9 6.9E-24 1.5E-28 256.6 23.1 149 339-511 18-184 (836)
65 KOG0465 Mitochondrial elongati 99.9 1.3E-24 2.7E-29 242.0 11.5 271 339-652 38-420 (721)
66 cd01885 EF2 EF2 (for archaea a 99.9 2.8E-23 6.1E-28 214.8 16.1 190 341-561 1-222 (222)
67 cd01888 eIF2_gamma eIF2-gamma 99.9 9.1E-23 2E-27 208.1 16.9 168 341-562 1-202 (203)
68 PRK14845 translation initiatio 99.9 3.8E-22 8.2E-27 241.7 24.3 223 400-649 490-780 (1049)
69 cd04165 GTPBP1_like GTPBP1-lik 99.9 7.7E-23 1.7E-27 212.1 15.7 177 342-561 1-224 (224)
70 cd01889 SelB_euk SelB subfamil 99.9 7.2E-22 1.6E-26 199.2 17.7 171 341-561 1-188 (192)
71 cd01891 TypA_BipA TypA (tyrosi 99.9 2.4E-21 5.1E-26 195.7 18.3 185 340-557 2-189 (194)
72 cd04171 SelB SelB subfamily. 99.9 5.7E-21 1.2E-25 185.1 18.5 154 342-535 2-156 (164)
73 cd01886 EF-G Elongation factor 99.9 3.3E-21 7.2E-26 205.1 15.2 165 342-535 1-166 (270)
74 cd01890 LepA LepA subfamily. 99.9 1.3E-20 2.8E-25 186.4 17.0 162 341-535 1-167 (179)
75 cd03704 eRF3c_III This family 99.8 6.3E-21 1.4E-25 175.6 12.6 106 658-763 2-108 (108)
76 cd04167 Snu114p Snu114p subfam 99.8 2.3E-20 5E-25 191.7 17.8 170 342-533 2-191 (213)
77 KOG0469 Elongation factor 2 [T 99.8 4.1E-21 8.9E-26 209.0 12.8 303 339-667 18-488 (842)
78 cd04168 TetM_like Tet(M)-like 99.8 2.5E-20 5.4E-25 194.9 17.1 130 342-493 1-130 (237)
79 cd04093 HBS1_C HBS1_C: this fa 99.8 3.3E-20 7.3E-25 170.3 14.3 106 658-763 2-107 (107)
80 cd00881 GTP_translation_factor 99.8 1.2E-19 2.7E-24 179.8 17.6 168 342-535 1-177 (189)
81 cd03705 EF1_alpha_III Domain I 99.8 1.2E-19 2.6E-24 165.8 11.8 102 659-760 3-104 (104)
82 PF02421 FeoB_N: Ferrous iron 99.8 2.9E-19 6.3E-24 174.6 12.6 143 341-535 1-151 (156)
83 cd04169 RF3 RF3 subfamily. Pe 99.8 1.1E-18 2.5E-23 185.5 17.7 149 341-510 3-151 (267)
84 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.4E-18 3.1E-23 169.4 16.8 151 341-535 1-156 (168)
85 KOG1144 Translation initiation 99.8 6.4E-19 1.4E-23 199.1 14.5 240 335-634 470-794 (1064)
86 COG1159 Era GTPase [General fu 99.8 1.1E-18 2.4E-23 183.3 15.2 180 338-579 4-198 (298)
87 COG1160 Predicted GTPases [Gen 99.8 1.1E-18 2.3E-23 192.4 15.6 155 338-535 176-341 (444)
88 KOG0467 Translation elongation 99.8 1.4E-17 3.1E-22 189.7 21.1 171 339-533 8-205 (887)
89 KOG0464 Elongation factor G [T 99.8 4E-19 8.7E-24 189.9 7.0 133 339-493 36-168 (753)
90 PF03143 GTP_EFTU_D3: Elongati 99.8 5.4E-18 1.2E-22 153.8 13.0 99 655-764 1-99 (99)
91 cd04160 Arfrp1 Arfrp1 subfamil 99.7 8.8E-18 1.9E-22 164.1 12.7 159 342-535 1-159 (167)
92 COG1160 Predicted GTPases [Gen 99.7 1.5E-17 3.3E-22 183.4 15.5 151 341-558 4-163 (444)
93 cd01895 EngA2 EngA2 subfamily. 99.7 3.8E-17 8.3E-22 158.8 16.2 153 340-535 2-165 (174)
94 TIGR03594 GTPase_EngA ribosome 99.7 2.3E-17 4.9E-22 186.6 16.3 153 339-535 171-334 (429)
95 cd04095 CysN_NoDQ_III TCysN_No 99.7 1.4E-17 3E-22 152.1 11.8 100 658-760 2-103 (103)
96 TIGR00436 era GTP-binding prot 99.7 3.9E-17 8.4E-22 174.0 16.7 145 342-535 2-154 (270)
97 PRK00093 GTP-binding protein D 99.7 4.2E-17 9.1E-22 184.9 17.8 152 339-535 172-334 (435)
98 cd04170 EF-G_bact Elongation f 99.7 4.9E-17 1.1E-21 173.0 15.8 144 342-510 1-144 (268)
99 cd01513 Translation_factor_III 99.7 7.6E-17 1.6E-21 146.3 12.4 101 658-760 2-102 (102)
100 PRK15494 era GTPase Era; Provi 99.7 1.5E-16 3.2E-21 174.9 16.1 148 339-535 51-206 (339)
101 TIGR03598 GTPase_YsxC ribosome 99.7 3.3E-16 7.2E-21 156.2 17.2 150 338-533 16-178 (179)
102 KOG0468 U5 snRNP-specific prot 99.7 2.1E-15 4.6E-20 169.4 25.2 151 338-511 126-289 (971)
103 cd03693 EF1_alpha_II EF1_alpha 99.7 8.2E-17 1.8E-21 143.8 10.2 88 566-654 2-90 (91)
104 cd01894 EngA1 EngA1 subfamily. 99.7 2.1E-16 4.5E-21 151.7 13.7 140 344-535 1-148 (157)
105 cd04154 Arl2 Arl2 subfamily. 99.7 1.8E-16 4E-21 156.6 13.4 154 338-535 12-165 (173)
106 PRK03003 GTP-binding protein D 99.7 4.6E-16 9.9E-21 178.4 16.4 152 339-535 210-372 (472)
107 cd01864 Rab19 Rab19 subfamily. 99.7 8.4E-16 1.8E-20 150.3 16.0 152 340-535 3-156 (165)
108 PRK00089 era GTPase Era; Revie 99.7 7.3E-16 1.6E-20 165.8 16.8 150 339-535 4-161 (292)
109 cd01898 Obg Obg subfamily. Th 99.7 7.2E-16 1.6E-20 150.8 14.5 147 342-535 2-161 (170)
110 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.4E-15 3.1E-20 147.6 15.2 151 340-535 2-154 (164)
111 cd04149 Arf6 Arf6 subfamily. 99.7 1E-15 2.2E-20 151.3 14.2 153 339-535 8-160 (168)
112 cd04157 Arl6 Arl6 subfamily. 99.7 1.2E-15 2.6E-20 147.8 14.4 152 342-535 1-154 (162)
113 cd01879 FeoB Ferrous iron tran 99.7 6.7E-16 1.5E-20 148.8 12.3 139 345-535 1-147 (158)
114 TIGR03594 GTPase_EngA ribosome 99.7 8.7E-16 1.9E-20 173.8 15.2 142 342-535 1-150 (429)
115 cd01897 NOG NOG1 is a nucleola 99.7 2.1E-15 4.6E-20 147.3 15.8 147 341-535 1-158 (168)
116 COG2262 HflX GTPases [General 99.7 1.6E-16 3.5E-21 172.9 8.4 182 299-535 154-346 (411)
117 TIGR00231 small_GTP small GTP- 99.7 1.1E-15 2.4E-20 144.7 13.2 150 341-535 2-154 (161)
118 cd04151 Arl1 Arl1 subfamily. 99.6 1.1E-15 2.5E-20 148.5 12.9 146 342-535 1-150 (158)
119 cd04164 trmE TrmE (MnmE, ThdF, 99.6 2E-15 4.3E-20 144.7 14.3 137 341-535 2-147 (157)
120 cd01861 Rab6 Rab6 subfamily. 99.6 5E-15 1.1E-19 143.6 16.8 146 342-535 2-152 (161)
121 cd04150 Arf1_5_like Arf1-Arf5- 99.6 2.4E-15 5.2E-20 147.2 14.4 147 341-535 1-151 (159)
122 cd04119 RJL RJL (RabJ-Like) su 99.6 3.9E-15 8.5E-20 144.5 15.5 151 341-535 1-157 (168)
123 cd01862 Rab7 Rab7 subfamily. 99.6 3.6E-15 7.8E-20 146.0 15.2 152 341-535 1-157 (172)
124 cd04138 H_N_K_Ras_like H-Ras/N 99.6 3.4E-15 7.3E-20 144.1 14.8 149 341-535 2-152 (162)
125 PRK03003 GTP-binding protein D 99.6 2.1E-15 4.6E-20 172.9 15.4 144 340-535 38-189 (472)
126 cd04124 RabL2 RabL2 subfamily. 99.6 8.3E-15 1.8E-19 143.3 17.5 144 341-535 1-148 (161)
127 cd03698 eRF3_II_like eRF3_II_l 99.6 7.4E-16 1.6E-20 135.3 9.0 83 568-651 1-83 (83)
128 cd04106 Rab23_lke Rab23-like s 99.6 7.4E-15 1.6E-19 142.5 16.8 149 341-535 1-153 (162)
129 TIGR03156 GTP_HflX GTP-binding 99.6 4.5E-16 9.8E-21 171.7 9.4 143 339-535 188-342 (351)
130 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 3.1E-15 6.6E-20 148.5 14.2 149 340-535 15-166 (174)
131 smart00175 RAB Rab subfamily o 99.6 9.6E-15 2.1E-19 141.6 17.2 147 341-535 1-152 (164)
132 cd04163 Era Era subfamily. Er 99.6 1E-14 2.3E-19 140.1 16.9 150 339-535 2-159 (168)
133 COG0486 ThdF Predicted GTPase 99.6 2E-15 4.4E-20 167.1 13.3 144 338-535 215-366 (454)
134 PRK09518 bifunctional cytidyla 99.6 3.2E-15 7E-20 179.2 16.3 151 340-535 450-611 (712)
135 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 3.6E-15 7.8E-20 151.5 14.2 152 341-535 1-158 (201)
136 PRK04213 GTP-binding protein; 99.6 5.4E-15 1.2E-19 149.7 15.4 153 339-535 8-182 (201)
137 smart00173 RAS Ras subfamily o 99.6 4.5E-15 9.8E-20 144.5 14.1 150 341-535 1-152 (164)
138 cd04113 Rab4 Rab4 subfamily. 99.6 7.4E-15 1.6E-19 142.7 15.3 147 341-535 1-152 (161)
139 cd00878 Arf_Arl Arf (ADP-ribos 99.6 3.2E-15 6.8E-20 144.8 12.6 150 342-535 1-150 (158)
140 PRK00093 GTP-binding protein D 99.6 3.7E-15 8.1E-20 169.1 15.2 143 341-535 2-152 (435)
141 cd01860 Rab5_related Rab5-rela 99.6 9.4E-15 2E-19 141.9 15.9 149 341-535 2-153 (163)
142 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 1.3E-14 2.7E-19 142.0 16.9 148 340-535 2-154 (166)
143 cd04127 Rab27A Rab27a subfamil 99.6 7E-15 1.5E-19 145.7 15.2 148 340-535 4-167 (180)
144 cd00154 Rab Rab family. Rab G 99.6 1.6E-14 3.5E-19 137.7 17.1 147 341-535 1-152 (159)
145 cd04175 Rap1 Rap1 subgroup. T 99.6 5.2E-15 1.1E-19 144.4 13.9 150 341-535 2-153 (164)
146 cd04136 Rap_like Rap-like subf 99.6 5E-15 1.1E-19 143.6 13.7 150 341-535 2-153 (163)
147 PLN00223 ADP-ribosylation fact 99.6 6E-15 1.3E-19 147.9 14.3 149 339-535 16-168 (181)
148 PRK09554 feoB ferrous iron tra 99.6 5.5E-15 1.2E-19 177.2 16.3 145 339-535 2-158 (772)
149 cd01867 Rab8_Rab10_Rab13_like 99.6 1.5E-14 3.3E-19 142.0 16.6 148 340-535 3-155 (167)
150 smart00177 ARF ARF-like small 99.6 8.1E-15 1.8E-19 145.8 14.8 149 339-535 12-164 (175)
151 TIGR02729 Obg_CgtA Obg family 99.6 5.2E-15 1.1E-19 161.9 14.5 155 339-535 156-319 (329)
152 cd04158 ARD1 ARD1 subfamily. 99.6 4.8E-15 1E-19 146.2 13.0 147 342-535 1-151 (169)
153 PRK00454 engB GTP-binding prot 99.6 1.6E-14 3.5E-19 145.1 16.8 149 339-535 23-184 (196)
154 cd01868 Rab11_like Rab11-like. 99.6 2E-14 4.3E-19 140.3 16.9 147 341-535 4-155 (165)
155 cd00879 Sar1 Sar1 subfamily. 99.6 5.7E-15 1.2E-19 147.9 13.3 153 339-535 18-181 (190)
156 cd01865 Rab3 Rab3 subfamily. 99.6 2.4E-14 5.1E-19 140.4 17.4 147 341-535 2-153 (165)
157 cd04089 eRF3_II eRF3_II: domai 99.6 2E-15 4.3E-20 132.3 8.7 82 568-651 1-82 (82)
158 cd04156 ARLTS1 ARLTS1 subfamil 99.6 7.3E-15 1.6E-19 142.4 13.6 151 342-535 1-152 (160)
159 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 9.1E-15 2E-19 144.8 14.4 149 342-535 2-155 (170)
160 PRK12299 obgE GTPase CgtA; Rev 99.6 8.5E-15 1.8E-19 160.5 15.3 153 339-535 157-318 (335)
161 cd01866 Rab2 Rab2 subfamily. 99.6 2.4E-14 5.2E-19 140.8 17.1 150 340-535 4-156 (168)
162 cd04159 Arl10_like Arl10-like 99.6 9.2E-15 2E-19 139.7 13.7 146 343-535 2-151 (159)
163 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 7.4E-15 1.6E-19 147.1 13.5 156 340-535 3-160 (183)
164 cd03694 GTPBP_II Domain II of 99.6 2.6E-15 5.6E-20 133.1 9.0 82 569-651 1-87 (87)
165 cd01863 Rab18 Rab18 subfamily. 99.6 1E-14 2.2E-19 141.6 14.0 148 341-535 1-152 (161)
166 TIGR02528 EutP ethanolamine ut 99.6 5.4E-15 1.2E-19 141.0 11.7 130 342-535 2-135 (142)
167 cd04116 Rab9 Rab9 subfamily. 99.6 9.3E-15 2E-19 143.4 13.7 153 339-535 4-161 (170)
168 cd04120 Rab12 Rab12 subfamily. 99.6 1.5E-14 3.3E-19 147.8 15.8 151 341-535 1-153 (202)
169 cd04155 Arl3 Arl3 subfamily. 99.6 9.9E-15 2.2E-19 143.5 13.9 153 339-535 13-165 (173)
170 PRK09518 bifunctional cytidyla 99.6 1.5E-14 3.2E-19 173.6 17.9 146 338-535 273-426 (712)
171 smart00178 SAR Sar1p-like memb 99.6 9.5E-15 2.1E-19 146.6 13.4 153 339-535 16-175 (184)
172 cd04122 Rab14 Rab14 subfamily. 99.6 2.2E-14 4.8E-19 140.5 15.7 147 341-535 3-154 (166)
173 cd04114 Rab30 Rab30 subfamily. 99.6 2.7E-14 5.8E-19 139.7 16.1 152 339-535 6-159 (169)
174 cd04142 RRP22 RRP22 subfamily. 99.6 8.4E-15 1.8E-19 149.2 12.9 152 341-535 1-164 (198)
175 PRK15467 ethanolamine utilizat 99.6 6.1E-15 1.3E-19 144.7 11.3 131 342-535 3-137 (158)
176 cd04109 Rab28 Rab28 subfamily. 99.6 2.2E-14 4.8E-19 147.5 16.0 148 341-535 1-156 (215)
177 cd01893 Miro1 Miro1 subfamily. 99.6 1.3E-14 2.8E-19 142.5 13.6 152 341-535 1-154 (166)
178 PRK11058 GTPase HflX; Provisio 99.6 1.4E-15 3E-20 171.6 7.2 147 340-535 197-352 (426)
179 PRK05291 trmE tRNA modificatio 99.6 9.4E-15 2E-19 166.4 14.0 139 339-535 214-360 (449)
180 cd03697 EFTU_II EFTU_II: Elong 99.6 5.3E-15 1.1E-19 131.1 9.2 84 569-653 1-87 (87)
181 PRK12298 obgE GTPase CgtA; Rev 99.6 1.4E-14 2.9E-19 161.9 14.7 152 340-535 159-323 (390)
182 PRK12296 obgE GTPase CgtA; Rev 99.6 1.9E-14 4.1E-19 163.9 16.1 155 339-535 158-330 (500)
183 cd01878 HflX HflX subfamily. 99.6 2.5E-14 5.3E-19 145.4 15.2 145 338-535 39-195 (204)
184 cd04115 Rab33B_Rab33A Rab33B/R 99.6 2.8E-14 6.1E-19 140.6 15.1 148 340-535 2-159 (170)
185 PTZ00369 Ras-like protein; Pro 99.6 1.4E-14 3E-19 145.8 13.1 154 339-535 4-157 (189)
186 cd04112 Rab26 Rab26 subfamily. 99.6 4.1E-14 8.8E-19 142.6 16.4 148 341-535 1-153 (191)
187 cd04139 RalA_RalB RalA/RalB su 99.6 2.6E-14 5.6E-19 138.4 14.4 150 341-535 1-152 (164)
188 PTZ00133 ADP-ribosylation fact 99.6 2.4E-14 5.3E-19 143.5 14.6 150 339-535 16-168 (182)
189 cd04147 Ras_dva Ras-dva subfam 99.6 1.7E-14 3.6E-19 146.4 13.5 151 342-535 1-153 (198)
190 cd04140 ARHI_like ARHI subfami 99.6 4.6E-14 1E-18 138.3 15.8 148 341-535 2-155 (165)
191 COG0218 Predicted GTPase [Gene 99.6 5.3E-14 1.2E-18 141.0 16.2 151 339-535 23-187 (200)
192 cd04118 Rab24 Rab24 subfamily. 99.6 4.8E-14 1E-18 141.8 16.0 152 341-535 1-156 (193)
193 PLN03118 Rab family protein; P 99.6 4E-14 8.8E-19 145.0 15.7 152 339-535 13-167 (211)
194 cd04110 Rab35 Rab35 subfamily. 99.6 7.4E-14 1.6E-18 141.8 17.5 148 340-535 6-157 (199)
195 cd04176 Rap2 Rap2 subgroup. T 99.6 2.4E-14 5.3E-19 139.4 13.3 150 341-535 2-153 (163)
196 cd04121 Rab40 Rab40 subfamily. 99.6 7.5E-14 1.6E-18 141.3 16.4 151 339-535 5-157 (189)
197 KOG0092 GTPase Rab5/YPT51 and 99.6 2.1E-14 4.5E-19 141.8 11.7 151 338-535 3-157 (200)
198 cd04177 RSR1 RSR1 subgroup. R 99.6 5.2E-14 1.1E-18 138.3 14.5 151 341-535 2-154 (168)
199 cd04123 Rab21 Rab21 subfamily. 99.6 6E-14 1.3E-18 135.3 14.4 147 341-535 1-152 (162)
200 cd04144 Ras2 Ras2 subfamily. 99.5 4.2E-14 9.1E-19 142.4 13.6 148 342-535 1-153 (190)
201 PRK12297 obgE GTPase CgtA; Rev 99.5 4E-14 8.7E-19 159.2 14.8 147 340-535 158-317 (424)
202 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 6E-14 1.3E-18 139.2 14.4 151 340-535 2-154 (172)
203 cd04135 Tc10 TC10 subfamily. 99.5 4.5E-14 9.8E-19 138.9 13.4 153 341-535 1-164 (174)
204 cd00157 Rho Rho (Ras homology) 99.5 6.8E-14 1.5E-18 136.8 14.4 151 341-535 1-163 (171)
205 cd04132 Rho4_like Rho4-like su 99.5 7.8E-14 1.7E-18 139.3 15.0 152 341-535 1-157 (187)
206 cd04161 Arl2l1_Arl13_like Arl2 99.5 3.2E-14 7E-19 140.3 12.0 147 342-535 1-159 (167)
207 cd04101 RabL4 RabL4 (Rab-like4 99.5 1.4E-13 3.1E-18 133.9 16.4 149 341-535 1-154 (164)
208 cd03696 selB_II selB_II: this 99.5 2E-14 4.3E-19 126.2 8.9 82 569-651 1-83 (83)
209 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 3.2E-14 6.9E-19 140.0 11.4 145 343-535 2-156 (164)
210 cd04111 Rab39 Rab39 subfamily. 99.5 8.3E-14 1.8E-18 143.1 14.8 152 340-535 2-156 (211)
211 cd00877 Ran Ran (Ras-related n 99.5 7.4E-14 1.6E-18 137.6 13.8 145 341-535 1-149 (166)
212 cd04143 Rhes_like Rhes_like su 99.5 1.2E-13 2.6E-18 145.5 16.1 151 341-535 1-161 (247)
213 PLN03110 Rab GTPase; Provision 99.5 2.4E-13 5.2E-18 140.2 17.9 149 339-535 11-164 (216)
214 PF10662 PduV-EutP: Ethanolami 99.5 4E-14 8.7E-19 135.9 11.2 131 341-535 2-136 (143)
215 cd04126 Rab20 Rab20 subfamily. 99.5 5.4E-14 1.2E-18 145.6 13.1 156 341-535 1-180 (220)
216 cd00876 Ras Ras family. The R 99.5 6.1E-14 1.3E-18 135.0 12.5 145 342-535 1-151 (160)
217 cd01881 Obg_like The Obg-like 99.5 6.7E-14 1.4E-18 137.3 12.9 146 345-535 1-167 (176)
218 cd04137 RheB Rheb (Ras Homolog 99.5 8.5E-14 1.8E-18 138.1 13.7 150 341-535 2-153 (180)
219 cd01874 Cdc42 Cdc42 subfamily. 99.5 9.7E-14 2.1E-18 138.2 14.0 151 341-535 2-165 (175)
220 cd01892 Miro2 Miro2 subfamily. 99.5 9E-14 1.9E-18 137.5 13.7 152 338-535 2-156 (169)
221 cd04128 Spg1 Spg1p. Spg1p (se 99.5 3E-13 6.5E-18 135.8 17.4 150 341-535 1-156 (182)
222 cd01875 RhoG RhoG subfamily. 99.5 1.6E-13 3.4E-18 138.7 15.3 156 339-535 2-167 (191)
223 cd00880 Era_like Era (E. coli 99.5 1.1E-13 2.4E-18 131.1 13.4 146 345-535 1-154 (163)
224 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.4E-13 3.1E-18 156.2 15.8 142 338-535 201-350 (442)
225 COG0370 FeoB Fe2+ transport sy 99.5 1.3E-13 2.9E-18 158.5 15.2 144 340-535 3-154 (653)
226 cd04117 Rab15 Rab15 subfamily. 99.5 2.6E-13 5.5E-18 132.9 15.1 150 341-535 1-152 (161)
227 PLN03071 GTP-binding nuclear p 99.5 2.4E-13 5.1E-18 140.6 15.3 150 338-535 11-162 (219)
228 cd03695 CysN_NodQ_II CysN_NodQ 99.5 6.8E-14 1.5E-18 122.4 9.5 80 569-651 1-81 (81)
229 cd01876 YihA_EngB The YihA (En 99.5 3.9E-13 8.4E-18 129.7 15.7 147 343-535 2-161 (170)
230 KOG1423 Ras-like GTPase ERA [C 99.5 2.1E-13 4.5E-18 142.9 14.2 120 335-493 67-199 (379)
231 cd01871 Rac1_like Rac1-like su 99.5 1.6E-13 3.5E-18 136.5 12.6 151 341-535 2-165 (174)
232 PLN03108 Rab family protein; P 99.5 5.3E-13 1.2E-17 136.9 16.8 148 340-535 6-158 (210)
233 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.1E-12 2.4E-17 136.3 19.3 167 337-561 36-202 (225)
234 COG2229 Predicted GTPase [Gene 99.5 4.2E-13 9.2E-18 132.0 14.9 159 337-535 7-168 (187)
235 cd04125 RabA_like RabA-like su 99.5 4.6E-13 1E-17 134.3 15.6 147 341-535 1-152 (188)
236 cd04146 RERG_RasL11_like RERG/ 99.5 1.6E-13 3.4E-18 134.2 11.5 149 342-535 1-154 (165)
237 PF00025 Arf: ADP-ribosylation 99.5 9.6E-14 2.1E-18 138.5 10.1 151 338-535 12-166 (175)
238 smart00174 RHO Rho (Ras homolo 99.5 6E-13 1.3E-17 131.0 15.4 149 343-535 1-162 (174)
239 cd04130 Wrch_1 Wrch-1 subfamil 99.5 4.7E-13 1E-17 132.3 13.9 152 341-535 1-164 (173)
240 cd04134 Rho3 Rho3 subfamily. 99.5 3.8E-13 8.2E-18 135.5 13.1 153 341-535 1-164 (189)
241 cd04133 Rop_like Rop subfamily 99.5 2.4E-13 5.2E-18 136.0 11.5 153 341-535 2-163 (176)
242 cd01870 RhoA_like RhoA-like su 99.5 4E-13 8.7E-18 132.3 12.7 152 341-535 2-165 (175)
243 TIGR00437 feoB ferrous iron tr 99.5 4E-13 8.7E-18 157.6 14.8 137 347-535 1-145 (591)
244 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 7.7E-13 1.7E-17 133.0 14.3 157 339-535 4-170 (182)
245 cd04148 RGK RGK subfamily. Th 99.4 7.6E-13 1.7E-17 137.0 13.4 148 341-535 1-153 (221)
246 KOG0084 GTPase Rab1/YPT1, smal 99.4 9.5E-13 2.1E-17 130.6 13.3 152 339-535 8-162 (205)
247 cd01896 DRG The developmentall 99.4 1.5E-12 3.3E-17 136.0 15.6 82 342-454 2-90 (233)
248 cd04131 Rnd Rnd subfamily. Th 99.4 7.7E-13 1.7E-17 132.4 12.8 152 341-535 2-166 (178)
249 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 1.3E-12 2.9E-17 129.1 13.9 151 338-535 20-175 (221)
250 cd03708 GTPBP_III Domain III o 99.4 8.2E-13 1.8E-17 116.7 11.2 85 658-763 2-87 (87)
251 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 1.3E-12 2.9E-17 136.3 14.2 155 339-535 12-178 (232)
252 cd00882 Ras_like_GTPase Ras-li 99.4 1.4E-12 3E-17 121.6 12.5 142 345-535 1-150 (157)
253 KOG1489 Predicted GTP-binding 99.4 6.4E-13 1.4E-17 140.1 11.0 155 339-535 195-357 (366)
254 PF01926 MMR_HSR1: 50S ribosom 99.4 1.3E-12 2.8E-17 121.0 11.8 107 342-488 1-116 (116)
255 cd03706 mtEFTU_III Domain III 99.4 2.2E-12 4.8E-17 115.6 12.3 86 659-763 3-93 (93)
256 PRK09866 hypothetical protein; 99.4 1.5E-12 3.2E-17 149.3 13.4 108 417-535 229-343 (741)
257 KOG0078 GTP-binding protein SE 99.4 2.5E-12 5.3E-17 129.3 13.0 152 339-535 11-164 (207)
258 KOG0394 Ras-related GTPase [Ge 99.4 1.1E-12 2.3E-17 128.6 10.0 157 338-535 7-168 (210)
259 smart00176 RAN Ran (Ras-relate 99.4 2.6E-12 5.7E-17 131.2 13.3 142 346-535 1-144 (200)
260 KOG1191 Mitochondrial GTPase [ 99.4 9.5E-13 2.1E-17 145.6 9.8 154 338-535 266-440 (531)
261 cd04103 Centaurin_gamma Centau 99.4 2.6E-12 5.7E-17 126.0 11.9 147 341-535 1-149 (158)
262 PF00071 Ras: Ras family; Int 99.4 8.8E-12 1.9E-16 121.0 14.8 149 342-535 1-151 (162)
263 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 8E-12 1.7E-16 129.7 15.1 151 341-535 2-166 (222)
264 cd03707 EFTU_III Domain III of 99.4 5.9E-12 1.3E-16 112.1 11.4 83 659-760 3-90 (90)
265 cd04105 SR_beta Signal recogni 99.4 1E-11 2.2E-16 127.1 14.7 114 341-493 1-123 (203)
266 KOG0098 GTPase Rab2, small G p 99.3 4.2E-12 9.1E-17 124.7 10.8 148 340-535 6-158 (216)
267 COG1084 Predicted GTPase [Gene 99.3 1E-11 2.2E-16 132.2 14.2 154 336-535 164-326 (346)
268 cd04129 Rho2 Rho2 subfamily. 99.3 6.5E-12 1.4E-16 126.2 11.1 151 341-535 2-163 (187)
269 cd04104 p47_IIGP_like p47 (47- 99.3 1.9E-11 4.2E-16 124.3 13.9 151 340-533 1-172 (197)
270 KOG0073 GTP-binding ADP-ribosy 99.3 1.4E-11 3E-16 118.8 11.7 148 339-535 15-168 (185)
271 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 1.6E-11 3.5E-16 124.5 12.8 136 341-514 1-153 (196)
272 cd01873 RhoBTB RhoBTB subfamil 99.3 1.5E-11 3.3E-16 125.1 11.7 106 416-535 64-186 (195)
273 KOG0080 GTPase Rab18, small G 99.3 1.3E-11 2.8E-16 118.3 10.1 154 338-535 9-164 (209)
274 PTZ00132 GTP-binding nuclear p 99.3 5.2E-11 1.1E-15 122.3 14.7 148 338-535 7-158 (215)
275 cd04102 RabL3 RabL3 (Rab-like3 99.3 6.8E-11 1.5E-15 121.0 15.4 155 341-535 1-180 (202)
276 COG0536 Obg Predicted GTPase [ 99.3 2.8E-11 6.1E-16 129.3 11.7 155 341-535 160-323 (369)
277 KOG0095 GTPase Rab30, small G 99.2 4.3E-11 9.3E-16 113.3 9.8 149 340-535 7-159 (213)
278 KOG0087 GTPase Rab11/YPT3, sma 99.2 2.2E-11 4.7E-16 122.2 8.1 145 339-535 13-166 (222)
279 PLN00023 GTP-binding protein; 99.2 1.7E-10 3.6E-15 124.9 14.2 146 336-516 17-190 (334)
280 cd01850 CDC_Septin CDC/Septin. 99.2 4.8E-10 1E-14 120.2 17.0 143 340-514 4-176 (276)
281 KOG0410 Predicted GTP binding 99.2 4.6E-11 1E-15 126.3 8.5 141 338-535 176-331 (410)
282 COG1163 DRG Predicted GTPase [ 99.2 1.2E-10 2.6E-15 123.7 11.3 86 339-455 62-154 (365)
283 KOG0086 GTPase Rab4, small G p 99.1 1.9E-10 4.1E-15 109.4 10.3 149 340-535 9-161 (214)
284 PF08477 Miro: Miro-like prote 99.1 7.7E-11 1.7E-15 108.8 7.6 114 342-490 1-119 (119)
285 COG1100 GTPase SAR1 and relate 99.1 5.7E-10 1.2E-14 114.2 14.1 155 340-535 5-175 (219)
286 COG5192 BMS1 GTP-binding prote 99.1 1.6E-09 3.6E-14 120.5 17.9 247 330-636 59-321 (1077)
287 COG3596 Predicted GTPase [Gene 99.1 4E-10 8.7E-15 117.7 11.8 154 337-535 36-212 (296)
288 KOG0075 GTP-binding ADP-ribosy 99.1 2.3E-10 5E-15 108.4 8.9 153 340-535 20-172 (186)
289 KOG0070 GTP-binding ADP-ribosy 99.1 1.2E-10 2.5E-15 115.1 7.1 150 338-535 15-168 (181)
290 KOG1532 GTPase XAB1, interacts 99.1 5.7E-11 1.2E-15 123.1 4.7 193 338-535 17-254 (366)
291 KOG0076 GTP-binding ADP-ribosy 99.1 2.8E-10 6.1E-15 110.9 9.1 162 338-535 15-177 (197)
292 cd04094 selB_III This family r 99.1 1E-09 2.2E-14 99.3 11.8 94 646-760 1-97 (97)
293 KOG0079 GTP-binding protein H- 99.1 3.2E-10 7E-15 107.5 8.4 149 341-535 9-159 (198)
294 cd01899 Ygr210 Ygr210 subfamil 99.1 2E-09 4.4E-14 117.4 15.4 36 418-453 69-111 (318)
295 PF09439 SRPRB: Signal recogni 99.1 4.9E-10 1.1E-14 112.3 9.5 112 341-493 4-126 (181)
296 KOG0093 GTPase Rab3, small G p 99.1 4.1E-10 8.8E-15 106.7 8.0 152 341-535 22-173 (193)
297 PRK09435 membrane ATPase/prote 99.0 9E-10 2E-14 120.4 10.1 103 415-535 146-250 (332)
298 cd01853 Toc34_like Toc34-like 99.0 8.4E-09 1.8E-13 108.9 17.1 121 336-493 27-163 (249)
299 PTZ00099 rab6; Provisional 99.0 3.5E-09 7.6E-14 106.0 11.7 118 402-535 11-132 (176)
300 cd03692 mtIF2_IVc mtIF2_IVc: t 99.0 2.8E-09 6.1E-14 93.9 9.5 76 571-649 3-82 (84)
301 PRK13768 GTPase; Provisional 99.0 4.8E-09 1E-13 111.1 12.2 105 417-535 96-237 (253)
302 KOG0091 GTPase Rab39, small G 98.9 1.4E-09 3.1E-14 104.8 7.2 150 340-535 8-163 (213)
303 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 1.4E-08 3E-13 106.0 14.3 152 342-529 1-161 (232)
304 COG0541 Ffh Signal recognition 98.9 7.2E-10 1.6E-14 122.3 5.0 183 290-492 48-252 (451)
305 PF03029 ATP_bind_1: Conserved 98.9 4.6E-09 9.9E-14 110.3 10.7 110 419-535 92-227 (238)
306 PRK09602 translation-associate 98.9 1E-08 2.2E-13 115.1 13.5 81 341-452 2-113 (396)
307 COG4917 EutP Ethanolamine util 98.9 3.2E-09 6.9E-14 98.5 7.2 131 341-535 2-136 (148)
308 TIGR00073 hypB hydrogenase acc 98.9 9.6E-09 2.1E-13 105.3 11.3 96 417-535 102-197 (207)
309 KOG0395 Ras-related GTPase [Ge 98.9 8.8E-09 1.9E-13 105.0 10.9 151 339-535 2-155 (196)
310 PF05049 IIGP: Interferon-indu 98.9 4.7E-09 1E-13 115.9 9.6 149 339-532 34-203 (376)
311 KOG0088 GTPase Rab21, small G 98.9 5.4E-09 1.2E-13 100.2 8.4 153 339-535 12-165 (218)
312 KOG0097 GTPase Rab14, small G 98.9 2.7E-08 5.7E-13 93.7 12.6 145 340-535 11-163 (215)
313 TIGR00991 3a0901s02IAP34 GTP-b 98.9 2.5E-08 5.4E-13 107.6 13.9 123 334-493 32-167 (313)
314 KOG0090 Signal recognition par 98.8 1.1E-08 2.5E-13 103.0 9.7 114 341-494 39-160 (238)
315 PTZ00258 GTP-binding protein; 98.8 3.6E-08 7.8E-13 109.9 13.7 83 339-452 20-126 (390)
316 KOG0071 GTP-binding ADP-ribosy 98.8 2.7E-08 5.9E-13 93.9 10.3 148 340-535 17-168 (180)
317 KOG0074 GTP-binding ADP-ribosy 98.8 2.4E-08 5.2E-13 94.3 9.1 154 338-535 15-169 (185)
318 PF04548 AIG1: AIG1 family; I 98.8 9.3E-08 2E-12 98.6 13.6 134 341-514 1-154 (212)
319 cd03688 eIF2_gamma_II eIF2_gam 98.7 3.4E-08 7.3E-13 90.4 8.6 87 565-652 2-112 (113)
320 PF00350 Dynamin_N: Dynamin fa 98.7 3.4E-08 7.3E-13 96.9 9.4 66 416-489 99-168 (168)
321 TIGR00750 lao LAO/AO transport 98.7 1.4E-07 3.1E-12 102.4 14.8 101 415-535 124-228 (300)
322 TIGR00101 ureG urease accessor 98.7 3.1E-08 6.7E-13 101.3 8.9 94 417-535 91-186 (199)
323 KOG0081 GTPase Rab27, small G 98.7 7.2E-09 1.6E-13 99.4 3.1 102 418-535 67-171 (219)
324 smart00053 DYNc Dynamin, GTPas 98.7 2.6E-07 5.7E-12 97.0 14.7 71 416-495 123-208 (240)
325 cd01342 Translation_Factor_II_ 98.7 1.2E-07 2.6E-12 80.4 9.1 79 569-650 1-82 (83)
326 KOG0083 GTPase Rab26/Rab37, sm 98.6 1.1E-08 2.5E-13 95.4 2.2 108 414-535 43-150 (192)
327 KOG0077 Vesicle coat complex C 98.6 2E-07 4.4E-12 90.6 10.3 115 339-495 19-137 (193)
328 TIGR02836 spore_IV_A stage IV 98.6 5E-07 1.1E-11 100.0 14.7 135 339-491 16-192 (492)
329 KOG2486 Predicted GTPase [Gene 98.6 2.6E-07 5.7E-12 96.7 9.9 157 338-536 134-307 (320)
330 PF03144 GTP_EFTU_D2: Elongati 98.5 1.6E-07 3.5E-12 80.2 6.4 68 582-650 1-74 (74)
331 PF03308 ArgK: ArgK protein; 98.5 5.2E-07 1.1E-11 94.6 11.4 171 339-535 28-220 (266)
332 PRK10463 hydrogenase nickel in 98.5 2.6E-07 5.6E-12 99.1 9.2 97 416-535 183-279 (290)
333 PRK09601 GTP-binding protein Y 98.5 2.8E-07 6E-12 101.9 8.5 82 341-453 3-108 (364)
334 cd01900 YchF YchF subfamily. 98.5 2.1E-07 4.5E-12 99.6 7.3 80 343-453 1-104 (274)
335 KOG0072 GTP-binding ADP-ribosy 98.5 1.4E-07 3E-12 89.6 4.8 151 339-535 17-169 (182)
336 COG1703 ArgK Putative periplas 98.5 1.5E-06 3.2E-11 92.3 12.8 177 338-535 49-244 (323)
337 KOG0780 Signal recognition par 98.5 7.9E-08 1.7E-12 104.2 3.3 186 287-492 46-253 (483)
338 TIGR00993 3a0901s04IAP86 chlor 98.4 2.7E-06 5.8E-11 99.0 15.1 118 339-493 117-250 (763)
339 COG0378 HypB Ni2+-binding GTPa 98.4 9.8E-07 2.1E-11 88.6 10.0 94 418-535 97-191 (202)
340 KOG3886 GTP-binding protein [S 98.4 5.8E-07 1.3E-11 91.7 8.3 150 341-529 5-163 (295)
341 PRK14974 cell division protein 98.4 3.2E-06 6.9E-11 93.0 14.5 164 339-535 139-320 (336)
342 KOG4252 GTP-binding protein [S 98.4 8.3E-08 1.8E-12 93.9 1.8 151 339-535 19-171 (246)
343 KOG1490 GTP-binding protein CR 98.4 4.7E-07 1E-11 101.0 7.7 160 337-537 165-333 (620)
344 PF00448 SRP54: SRP54-type pro 98.4 2.6E-07 5.7E-12 94.2 4.8 135 341-493 2-154 (196)
345 KOG0448 Mitofusin 1 GTPase, in 98.4 1.8E-06 3.9E-11 99.6 11.6 100 419-528 207-309 (749)
346 PF00735 Septin: Septin; Inte 98.4 5.6E-06 1.2E-10 89.2 14.8 143 340-515 4-176 (281)
347 TIGR00064 ftsY signal recognit 98.4 6.3E-06 1.4E-10 88.4 15.0 67 416-493 153-231 (272)
348 PRK10416 signal recognition pa 98.4 1.2E-06 2.7E-11 95.7 9.3 94 416-535 195-300 (318)
349 TIGR01425 SRP54_euk signal rec 98.3 1.6E-06 3.4E-11 97.9 10.0 64 416-492 181-252 (429)
350 PF14578 GTP_EFTU_D4: Elongati 98.3 2.5E-06 5.5E-11 74.2 8.3 76 567-649 3-79 (81)
351 KOG0393 Ras-related small GTPa 98.3 1.8E-06 3.9E-11 87.5 7.0 154 339-535 3-169 (198)
352 KOG1707 Predicted Ras related/ 98.2 3.5E-06 7.6E-11 95.9 8.4 152 336-535 5-165 (625)
353 cd03690 Tet_II Tet_II: This su 98.1 1.2E-05 2.5E-10 71.1 8.8 79 566-650 1-84 (85)
354 cd01858 NGP_1 NGP-1. Autoanti 98.1 4.3E-06 9.2E-11 81.8 6.5 56 340-428 102-157 (157)
355 cd04092 mtEFG2_II_like mtEFG2_ 98.1 1.2E-05 2.5E-10 70.6 8.4 76 571-651 3-83 (83)
356 PRK00771 signal recognition pa 98.1 3.2E-06 6.9E-11 96.0 5.4 134 338-492 93-245 (437)
357 cd04088 EFG_mtEFG_II EFG_mtEFG 98.1 1.7E-05 3.7E-10 69.4 8.6 75 571-650 3-82 (83)
358 cd04178 Nucleostemin_like Nucl 98.1 6.2E-06 1.3E-10 82.5 6.5 57 339-428 116-172 (172)
359 KOG3883 Ras family small GTPas 98.0 5.4E-05 1.2E-09 72.9 11.8 148 339-535 8-165 (198)
360 cd03699 lepA_II lepA_II: This 98.0 3.1E-05 6.6E-10 68.5 9.3 81 569-651 1-86 (86)
361 TIGR00959 ffh signal recogniti 98.0 4.6E-06 9.9E-11 94.6 4.8 135 339-492 98-252 (428)
362 cd04091 mtEFG1_II_like mtEFG1_ 98.0 3.1E-05 6.8E-10 67.6 9.0 72 573-650 5-80 (81)
363 cd01859 MJ1464 MJ1464. This f 98.0 2E-05 4.3E-10 76.8 8.7 78 438-535 9-86 (156)
364 cd03691 BipA_TypA_II BipA_TypA 98.0 3.1E-05 6.8E-10 68.2 8.9 77 569-650 1-85 (86)
365 KOG1547 Septin CDC10 and relat 98.0 0.00011 2.3E-09 75.9 13.8 142 340-515 46-218 (336)
366 cd01858 NGP_1 NGP-1. Autoanti 98.0 1.5E-05 3.2E-10 78.0 7.5 82 435-535 2-85 (157)
367 PRK10867 signal recognition pa 98.0 5.2E-06 1.1E-10 94.2 4.6 135 339-492 99-253 (433)
368 cd03689 RF3_II RF3_II: this su 98.0 3.4E-05 7.4E-10 68.2 8.5 74 573-651 3-84 (85)
369 PRK11889 flhF flagellar biosyn 97.9 5.4E-05 1.2E-09 84.3 11.1 66 417-493 320-391 (436)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 4.1E-05 8.9E-10 73.6 9.0 80 433-532 3-84 (141)
371 KOG1486 GTP-binding protein DR 97.9 2.1E-05 4.6E-10 81.3 7.2 85 339-454 61-152 (364)
372 COG5019 CDC3 Septin family pro 97.9 0.00019 4.2E-09 78.4 14.6 144 339-515 22-196 (373)
373 PF00641 zf-RanBP: Zn-finger i 97.9 4.7E-06 1E-10 59.0 1.2 29 48-76 2-30 (30)
374 cd03115 SRP The signal recogni 97.8 0.00017 3.7E-09 71.5 12.3 67 416-493 81-153 (173)
375 cd01849 YlqF_related_GTPase Yl 97.8 2.5E-05 5.4E-10 76.3 5.9 57 339-428 99-155 (155)
376 PRK14722 flhF flagellar biosyn 97.8 0.00011 2.4E-09 81.9 11.5 24 340-363 137-160 (374)
377 KOG3905 Dynein light intermedi 97.8 0.00015 3.2E-09 77.7 11.5 54 476-535 220-280 (473)
378 cd01851 GBP Guanylate-binding 97.8 0.00026 5.6E-09 73.8 13.3 88 338-453 5-103 (224)
379 KOG1954 Endocytosis/signaling 97.8 0.00013 2.9E-09 79.2 10.8 171 339-534 57-263 (532)
380 PRK12724 flagellar biosynthesi 97.8 0.00013 2.9E-09 82.1 11.3 129 340-493 223-373 (432)
381 COG1161 Predicted GTPases [Gen 97.8 2.8E-05 6.1E-10 85.3 5.9 57 338-427 130-186 (322)
382 KOG1673 Ras GTPases [General f 97.8 0.00011 2.4E-09 71.0 9.0 153 338-535 18-176 (205)
383 KOG0096 GTPase Ran/TC4/GSP1 (n 97.8 8.7E-05 1.9E-09 74.0 8.4 148 338-535 8-159 (216)
384 cd01856 YlqF YlqF. Proteins o 97.8 5.1E-05 1.1E-09 75.4 6.9 89 425-535 2-91 (171)
385 cd01855 YqeH YqeH. YqeH is an 97.8 3.7E-05 8E-10 77.5 5.9 63 341-428 128-190 (190)
386 cd01855 YqeH YqeH. YqeH is an 97.8 8.2E-05 1.8E-09 75.0 8.3 91 431-535 24-115 (190)
387 COG0012 Predicted GTPase, prob 97.7 6.4E-05 1.4E-09 82.5 7.5 83 340-453 2-109 (372)
388 PRK12288 GTPase RsgA; Reviewed 97.7 3.9E-05 8.5E-10 85.0 5.8 64 342-431 207-270 (347)
389 PF03193 DUF258: Protein of un 97.7 2.2E-05 4.8E-10 77.5 3.5 23 341-363 36-58 (161)
390 PRK09563 rbgA GTPase YlqF; Rev 97.7 6.3E-05 1.4E-09 81.3 7.2 57 339-428 120-176 (287)
391 cd01849 YlqF_related_GTPase Yl 97.7 0.00011 2.5E-09 71.7 8.3 74 443-535 1-75 (155)
392 COG0552 FtsY Signal recognitio 97.7 0.00031 6.6E-09 76.3 12.2 131 338-492 137-297 (340)
393 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 4.4E-05 9.5E-10 73.4 5.2 21 342-362 85-105 (141)
394 PRK12726 flagellar biosynthesi 97.7 0.00017 3.7E-09 80.1 10.2 133 339-493 205-356 (407)
395 PRK14721 flhF flagellar biosyn 97.7 0.00022 4.8E-09 80.7 11.3 131 339-493 190-340 (420)
396 COG1419 FlhF Flagellar GTP-bin 97.7 0.00025 5.4E-09 79.0 11.3 123 340-493 203-352 (407)
397 KOG1487 GTP-binding protein DR 97.7 8.1E-05 1.8E-09 77.5 7.0 85 340-455 59-150 (358)
398 TIGR03596 GTPase_YlqF ribosome 97.7 8.9E-05 1.9E-09 79.7 7.5 88 426-535 5-93 (276)
399 PRK12289 GTPase RsgA; Reviewed 97.7 0.00014 3E-09 80.8 9.1 79 439-535 87-165 (352)
400 TIGR03596 GTPase_YlqF ribosome 97.7 6.6E-05 1.4E-09 80.6 6.4 57 339-428 117-173 (276)
401 cd03112 CobW_like The function 97.6 0.00012 2.6E-09 72.1 7.4 22 342-363 2-23 (158)
402 TIGR00092 GTP-binding protein 97.6 0.0001 2.2E-09 81.9 7.4 82 341-453 3-109 (368)
403 PRK12723 flagellar biosynthesi 97.6 0.00029 6.4E-09 79.1 11.2 67 416-493 253-326 (388)
404 TIGR00157 ribosome small subun 97.6 6.7E-05 1.4E-09 79.3 5.7 63 341-430 121-183 (245)
405 cd01856 YlqF YlqF. Proteins o 97.6 0.00011 2.3E-09 73.1 6.7 57 339-428 114-170 (171)
406 TIGR00157 ribosome small subun 97.6 0.00015 3.2E-09 76.7 7.2 82 437-535 32-113 (245)
407 PF05783 DLIC: Dynein light in 97.6 0.001 2.2E-08 76.6 14.4 53 477-535 195-254 (472)
408 KOG4423 GTP-binding protein-li 97.5 4E-06 8.7E-11 83.0 -4.5 152 341-536 26-185 (229)
409 PRK12289 GTPase RsgA; Reviewed 97.5 9E-05 1.9E-09 82.3 5.3 64 342-431 174-237 (352)
410 COG1162 Predicted GTPases [Gen 97.5 9.7E-05 2.1E-09 79.4 5.3 65 341-431 165-229 (301)
411 PRK00098 GTPase RsgA; Reviewed 97.5 0.00027 5.8E-09 76.9 8.8 80 439-535 78-157 (298)
412 cd03114 ArgK-like The function 97.5 7.5E-05 1.6E-09 72.8 3.8 35 416-453 90-124 (148)
413 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.00027 5.8E-09 76.4 8.1 89 425-535 7-96 (287)
414 PRK06731 flhF flagellar biosyn 97.5 0.00064 1.4E-08 72.8 10.7 66 417-493 154-225 (270)
415 smart00547 ZnF_RBZ Zinc finger 97.5 4.2E-05 9.2E-10 52.2 1.1 25 49-73 1-25 (26)
416 KOG2655 Septin family protein 97.5 0.0012 2.6E-08 72.8 12.6 143 340-515 21-192 (366)
417 KOG1491 Predicted GTP-binding 97.4 0.00033 7.1E-09 75.7 7.6 84 339-453 19-126 (391)
418 KOG0447 Dynamin-like GTP bindi 97.4 0.0013 2.8E-08 74.5 12.1 145 338-493 306-493 (980)
419 PRK05703 flhF flagellar biosyn 97.4 0.0012 2.5E-08 75.4 12.0 67 416-493 298-371 (424)
420 PF02492 cobW: CobW/HypB/UreG, 97.4 0.00011 2.5E-09 73.6 3.3 82 417-509 84-170 (178)
421 PRK14723 flhF flagellar biosyn 97.4 0.00096 2.1E-08 80.3 11.5 130 340-493 185-337 (767)
422 cd03110 Fer4_NifH_child This p 97.4 0.001 2.3E-08 66.2 10.1 66 416-492 91-156 (179)
423 PRK13796 GTPase YqeH; Provisio 97.4 0.00022 4.8E-09 79.7 5.8 61 341-429 161-221 (365)
424 PRK06995 flhF flagellar biosyn 97.4 0.0013 2.8E-08 75.8 11.9 130 340-493 256-405 (484)
425 COG3640 CooC CO dehydrogenase 97.4 0.00066 1.4E-08 70.3 8.6 66 416-492 132-198 (255)
426 PRK12727 flagellar biosynthesi 97.3 0.00087 1.9E-08 77.4 10.3 24 340-363 350-373 (559)
427 TIGR03597 GTPase_YqeH ribosome 97.3 0.00058 1.2E-08 76.3 8.7 94 428-535 50-143 (360)
428 TIGR03597 GTPase_YqeH ribosome 97.3 0.00032 7E-09 78.3 6.3 116 341-493 155-280 (360)
429 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00033 7.2E-09 75.8 5.8 65 341-431 162-226 (287)
430 TIGR00487 IF-2 translation ini 97.2 0.0024 5.2E-08 75.6 12.8 178 420-650 389-575 (587)
431 COG0523 Putative GTPases (G3E 97.2 0.0017 3.7E-08 71.3 10.6 92 417-527 84-184 (323)
432 cd01859 MJ1464 MJ1464. This f 97.2 0.00051 1.1E-08 66.9 5.9 23 340-362 101-123 (156)
433 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.0011 2.3E-08 71.8 8.9 79 439-535 76-154 (287)
434 cd03700 eEF2_snRNP_like_II EF2 97.2 0.0011 2.3E-08 59.6 7.4 74 571-649 3-91 (93)
435 KOG2485 Conserved ATP/GTP bind 97.2 0.00063 1.4E-08 73.0 6.0 64 339-427 142-205 (335)
436 cd04090 eEF2_II_snRNP Loc2 eEF 97.1 0.0021 4.5E-08 57.8 8.4 67 571-639 3-83 (94)
437 KOG2743 Cobalamin synthesis pr 97.1 0.0035 7.6E-08 66.9 11.3 87 416-509 144-239 (391)
438 PRK12288 GTPase RsgA; Reviewed 97.1 0.0019 4.2E-08 71.7 9.5 81 439-535 118-198 (347)
439 PRK05306 infB translation init 97.1 0.006 1.3E-07 74.3 14.2 178 420-650 591-777 (787)
440 CHL00189 infB translation init 97.1 0.0063 1.4E-07 73.6 14.1 178 420-650 546-731 (742)
441 PRK11537 putative GTP-binding 97.1 0.0047 1E-07 67.8 12.0 25 339-363 3-27 (318)
442 PRK01889 GTPase RsgA; Reviewed 97.0 0.0019 4.1E-08 72.0 8.8 78 439-535 110-187 (356)
443 PRK00098 GTPase RsgA; Reviewed 97.0 0.00086 1.9E-08 72.9 5.6 23 341-363 165-187 (298)
444 TIGR02475 CobW cobalamin biosy 97.0 0.0059 1.3E-07 67.8 11.9 24 340-363 4-27 (341)
445 PRK13796 GTPase YqeH; Provisio 97.0 0.0027 5.9E-08 71.0 9.4 90 432-535 59-149 (365)
446 cd02036 MinD Bacterial cell di 97.0 0.0071 1.5E-07 59.6 11.3 64 419-492 64-127 (179)
447 KOG1424 Predicted GTP-binding 96.9 0.00067 1.4E-08 76.8 4.1 57 339-428 313-369 (562)
448 PF00503 G-alpha: G-protein al 96.7 0.0068 1.5E-07 68.3 9.9 89 402-493 219-317 (389)
449 COG1162 Predicted GTPases [Gen 96.7 0.0061 1.3E-07 65.8 8.8 81 439-535 77-157 (301)
450 cd03111 CpaE_like This protein 96.7 0.014 2.9E-07 53.6 10.0 60 419-488 44-106 (106)
451 KOG1534 Putative transcription 96.6 0.0032 6.9E-08 64.2 5.9 72 418-493 98-178 (273)
452 KOG1533 Predicted GTPase [Gene 96.6 0.013 2.8E-07 60.8 10.1 76 417-493 96-177 (290)
453 KOG3887 Predicted small GTPase 96.6 0.003 6.6E-08 65.4 5.3 152 341-529 28-187 (347)
454 KOG0082 G-protein alpha subuni 96.5 0.032 7E-07 61.7 13.0 89 401-493 178-276 (354)
455 cd02038 FleN-like FleN is a me 96.5 0.033 7.2E-07 53.5 11.4 65 418-492 45-110 (139)
456 COG0532 InfB Translation initi 96.4 0.051 1.1E-06 62.5 14.5 178 420-650 310-496 (509)
457 KOG2484 GTPase [General functi 96.3 0.0027 5.8E-08 70.1 3.4 60 336-428 248-307 (435)
458 PRK08099 bifunctional DNA-bind 96.3 0.018 3.9E-07 65.3 9.8 29 339-367 218-246 (399)
459 PF09173 eIF2_C: Initiation fa 96.3 0.045 9.7E-07 48.7 10.1 60 673-760 25-88 (88)
460 KOG0781 Signal recognition par 96.2 0.019 4.1E-07 64.8 9.2 145 336-493 374-544 (587)
461 cd00066 G-alpha G protein alph 96.2 0.017 3.6E-07 63.5 8.7 86 404-493 147-242 (317)
462 KOG4181 Uncharacterized conser 96.2 0.051 1.1E-06 59.2 11.8 25 339-363 187-211 (491)
463 PF09547 Spore_IV_A: Stage IV 96.1 0.13 2.8E-06 57.9 15.3 25 340-364 17-41 (492)
464 cd01983 Fer4_NifH The Fer4_Nif 96.1 0.056 1.2E-06 46.9 9.9 69 343-454 2-71 (99)
465 TIGR03348 VI_IcmF type VI secr 96.0 0.02 4.2E-07 73.4 9.3 20 341-360 112-131 (1169)
466 smart00275 G_alpha G protein a 96.0 0.028 6E-07 62.5 9.4 90 403-493 169-265 (342)
467 smart00010 small_GTPase Small 95.9 0.011 2.5E-07 54.1 5.0 21 341-361 1-21 (124)
468 cd02042 ParA ParA and ParB of 95.8 0.056 1.2E-06 48.7 8.8 35 418-454 40-74 (104)
469 COG1341 Predicted GTPase or GT 95.6 0.018 3.9E-07 64.2 5.9 28 338-365 71-98 (398)
470 PRK13695 putative NTPase; Prov 95.5 0.049 1.1E-06 54.1 8.1 22 342-363 2-23 (174)
471 KOG2423 Nucleolar GTPase [Gene 95.4 0.012 2.5E-07 65.0 3.6 27 337-363 304-330 (572)
472 cd04178 Nucleostemin_like Nucl 95.4 0.028 6E-07 56.3 6.0 42 443-493 1-44 (172)
473 cd03702 IF2_mtIF2_II This fami 95.3 0.077 1.7E-06 48.0 7.7 60 572-634 4-65 (95)
474 PRK01889 GTPase RsgA; Reviewed 95.2 0.018 4E-07 64.2 4.5 23 341-363 196-218 (356)
475 KOG1707 Predicted Ras related/ 95.1 0.12 2.5E-06 60.0 10.3 148 334-529 419-568 (625)
476 TIGR00491 aIF-2 translation in 95.0 0.061 1.3E-06 63.9 8.2 75 575-651 473-549 (590)
477 PRK10751 molybdopterin-guanine 95.0 0.073 1.6E-06 53.5 7.4 24 339-362 5-28 (173)
478 KOG3859 Septins (P-loop GTPase 94.8 0.09 1.9E-06 55.8 7.7 24 339-362 41-64 (406)
479 KOG4477 RING1 interactor RYBP 94.5 0.021 4.6E-07 56.4 2.0 29 47-75 21-49 (228)
480 cd03701 IF2_IF5B_II IF2_IF5B_I 94.3 0.2 4.3E-06 45.3 7.8 59 573-634 5-65 (95)
481 KOG2484 GTPase [General functi 94.3 0.15 3.3E-06 56.7 8.3 79 423-514 127-206 (435)
482 PF13207 AAA_17: AAA domain; P 94.2 0.047 1E-06 50.4 3.8 24 342-365 1-24 (121)
483 PF06858 NOG1: Nucleolar GTP-b 94.1 0.18 4E-06 41.3 6.4 51 435-490 6-58 (58)
484 COG3523 IcmF Type VI protein s 93.9 0.1 2.3E-06 65.7 7.0 19 342-360 127-145 (1188)
485 cd03703 aeIF5B_II aeIF5B_II: T 93.2 0.54 1.2E-05 43.7 8.8 74 573-649 5-92 (110)
486 COG1618 Predicted nucleotide k 93.2 0.49 1.1E-05 46.9 8.8 24 339-362 4-27 (179)
487 PRK04004 translation initiatio 93.1 0.22 4.7E-06 59.4 7.6 74 575-650 475-550 (586)
488 PF03205 MobB: Molybdopterin g 92.9 0.1 2.2E-06 50.5 3.7 22 341-362 1-22 (140)
489 PF13555 AAA_29: P-loop contai 92.8 0.11 2.3E-06 43.4 3.1 22 342-363 25-46 (62)
490 COG0563 Adk Adenylate kinase a 92.8 0.099 2.2E-06 52.7 3.6 25 342-366 2-26 (178)
491 PF13671 AAA_33: AAA domain; P 92.7 0.11 2.3E-06 49.3 3.6 23 343-365 2-24 (143)
492 PRK14845 translation initiatio 92.7 0.23 5E-06 62.4 7.3 75 575-651 931-1007(1049)
493 PRK08233 hypothetical protein; 92.6 0.12 2.5E-06 51.2 3.9 26 340-365 3-28 (182)
494 PF00437 T2SE: Type II/IV secr 92.6 0.2 4.4E-06 53.3 5.9 23 340-362 127-149 (270)
495 PHA00729 NTP-binding motif con 92.5 0.15 3.2E-06 53.4 4.5 24 340-363 17-40 (226)
496 PRK08118 topology modulation p 92.5 0.11 2.4E-06 51.7 3.5 25 341-365 2-26 (167)
497 PRK07261 topology modulation p 92.5 0.11 2.4E-06 51.8 3.5 22 342-363 2-23 (171)
498 cd01120 RecA-like_NTPases RecA 92.5 0.49 1.1E-05 45.0 8.0 21 343-363 2-22 (165)
499 TIGR00235 udk uridine kinase. 92.5 0.13 2.8E-06 52.7 4.0 28 338-365 4-31 (207)
500 PRK14530 adenylate kinase; Pro 92.2 0.14 3E-06 52.8 3.8 27 340-366 3-29 (215)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-88 Score=730.17 Aligned_cols=423 Identities=43% Similarity=0.745 Sum_probs=412.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.+++++++++||+|||||||+++|++++|.++.+.+++++++|+..|+++|.|+|+||+.++||+||+|+++++..|+++
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
.+.++|+|+|||++|+++|+.++.+||++||||||+.+.||+||. .++||+||+.+++.+|+.++||++||||+++|++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~-~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFG-VGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccc-cCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 999999999999999999999999999999999999999999995 6899999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeEeE
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDV 576 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~dv 576 (768)
++|++++.++..+++.+||.+.+++|||+||+.|+|+.+.. ..++||+|++||++|+.+.+|.+..++|||+||+++
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s---~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v 239 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS---ENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDV 239 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC---cCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeE
Confidence 99999999999999999999889999999999999998865 469999999999999999999999999999999999
Q ss_pred EeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCCCC
Q 004202 577 LKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 655 (768)
Q Consensus 577 ~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~p 655 (768)
|.+. .|+| ..|||++|.|++||+|.++|.+...+|++|++++++.+.|.|||+|++.|+|+...+|++|+|++++++|
T Consensus 240 ~~i~~~gtv-~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~ 318 (428)
T COG5256 240 YSISGIGTV-PVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNP 318 (428)
T ss_pred EEecCCceE-EEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCCC
Confidence 9987 9999 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEee
Q 004202 656 VAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVE 735 (768)
Q Consensus 656 ~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e 735 (768)
+..+..|.|++.+|.|+.+|.+||.++||+|+..++|+|.+|..++|+.||+..+++|.+++.|+.+.|++++.+|+|++
T Consensus 319 ~t~s~~f~a~i~vl~~p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~~~e 398 (428)
T COG5256 319 PTVSPEFTAQIIVLWHPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLCLE 398 (428)
T ss_pred cccccceEEEEEEEecCccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCceEee
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcceEEEEeCCcEEEEEEEEeec
Q 004202 736 EFSNCRALGRAFLRSSGRTIAVGIVTRII 764 (768)
Q Consensus 736 ~~~~~~~lGRfILR~~g~TvgvG~V~~v~ 764 (768)
.+++++.||||+||+.|+|||+|+|..+.
T Consensus 399 ~~~~~~~Lgrfalrd~g~tIA~G~v~~v~ 427 (428)
T COG5256 399 KVSEIPQLGRFALRDMGQTIAAGKVLEVK 427 (428)
T ss_pred ecccCCccceEEEEeCCCeEEeEEEEecc
Confidence 99999999999999999999999999875
No 2
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-82 Score=696.21 Aligned_cols=428 Identities=49% Similarity=0.818 Sum_probs=415.7
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 004202 335 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 414 (768)
Q Consensus 335 ~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~ 414 (768)
...+.+++++++||+|||||||+|+|++.++.|.++.|+++++++...|+++|.|+|++|+..+||+||+|++++...|+
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
++.+.++|+|+|||.+|+++|+.++.+||++||||||+.+.||+||+ +.+||+||+.+++.||+.++||+|||||+++|
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd-~~gQtrEha~llr~Lgi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFD-PGGQTREHALLLRSLGISQLIVAINKMDLVSW 330 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccC-CCCchHHHHHHHHHcCcceEEEEeecccccCc
Confidence 99999999999999999999999999999999999999999999999 78999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhHHH-hhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeee
Q 004202 495 SKDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPI 573 (768)
Q Consensus 495 s~e~~~~i~~el~~~l-k~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I 573 (768)
+++||++|+..+..+| +.+||...++.|||+|+++|+|+....+.+.+..||+|++||+.|+.+..|.+..++||+|.|
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltI 410 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTI 410 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEh
Confidence 9999999999999999 889999999999999999999999988888899999999999999999988888999999999
Q ss_pred EeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccc-c
Q 004202 574 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC-H 651 (768)
Q Consensus 574 ~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~-~ 651 (768)
.++++.+ .| +.++|+|++|.|++||+|+++|+...++|++|.+++.++.+|.|||.|.+.|.++++..++.|+|++ .
T Consensus 411 sdi~~~~~~~-~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~~ 489 (603)
T KOG0458|consen 411 SDIYPLPSSG-VSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADSG 489 (603)
T ss_pred hheeecCCCe-eEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeeecC
Confidence 9999999 77 4589999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCCCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCce
Q 004202 652 PDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEP 731 (768)
Q Consensus 652 ~~~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~p 731 (768)
++.|++.+..|.+++.||+...||..|.++.+|+|+..++|++.++...+++.||+..++.|++|..|+.|.++++...|
T Consensus 490 ~~~~i~~~~~f~~~~~~f~~~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele~~~p 569 (603)
T KOG0458|consen 490 PQFPISKTTRFVARITTFDINLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVELETERP 569 (603)
T ss_pred CCccccceeEEEEEEEEeeccccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeeccccCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccCCcceEEEEeCCcEEEEEEEEeec
Q 004202 732 VCVEEFSNCRALGRAFLRSSGRTIAVGIVTRII 764 (768)
Q Consensus 732 I~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~ 764 (768)
||++.|.+++++|||+||..|+|||+|+|++|.
T Consensus 570 I~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 570 ICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred hhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 999999999999999999999999999999985
No 3
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=8.1e-79 Score=686.72 Aligned_cols=424 Identities=36% Similarity=0.665 Sum_probs=403.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.+++++|+++||+|+|||||+++|++.++.+....++++++.+...++++|.|+|++|..++|+++|+|+++++..|+++
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 45789999999999999999999999999999999999998998899999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc--cc
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QY 494 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv--~~ 494 (768)
++.++|+|||||++|+++|+.++..+|++||||||..|.||+++.. .+||++|+.++..+|+|++|||+||||+. +|
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~-~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK-DGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCC-CchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 9999999999999999999999999999999999999999988874 57999999999999999899999999987 57
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeE
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~ 574 (768)
++++|+++.+++..+++..||...+++|||+||++|+|+.+... .++||+|++|+++|+.+++|.+..+.||||+|+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~---~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERST---NLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccccccc---CCcccchHHHHHHHhhcCCCccccCCCcEEEEE
Confidence 78999999999999999999987779999999999999987543 389999999999999998888888999999999
Q ss_pred eEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccC-
Q 004202 575 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP- 652 (768)
Q Consensus 575 dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~- 652 (768)
++|+++ .|+| ++|+|++|.|++||+|.++|++..++|++|++++.+++.|.|||+|+|.|++++..++++|+||+++
T Consensus 240 ~v~~~~g~G~v-v~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~ 318 (447)
T PLN00043 240 DVYKIGGIGTV-PVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSK 318 (447)
T ss_pred EEEEeCCcEEE-EEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCC
Confidence 999998 8988 8999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceE
Q 004202 653 DFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPV 732 (768)
Q Consensus 653 ~~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI 732 (768)
+.|+..++.|+|+|+||+++.+|..||++++|+|+.+++|+|.+|.+++|.+||+..+++|++|++|+.|.|+|++.+|+
T Consensus 319 ~~p~~~~~~F~A~i~~l~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~pi 398 (447)
T PLN00043 319 DDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPM 398 (447)
T ss_pred CCCCccccEEEEEEEEECCCCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCcE
Confidence 56777899999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred EeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004202 733 CVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 733 ~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
|+++|++++.||||+||++|.|||+|+|+++..
T Consensus 399 ~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~ 431 (447)
T PLN00043 399 VVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEK 431 (447)
T ss_pred EEEecccCCCCceEEEEECCCeEEEEEEEEEec
Confidence 999999999999999999999999999999875
No 4
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1.5e-77 Score=676.70 Aligned_cols=425 Identities=39% Similarity=0.710 Sum_probs=403.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.+++++|+++||+|+|||||+++|++.++.+....++++++.+...|+++++|+|++|..++|+++|+|++++...|+++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc--cccc
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD--AVQY 494 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD--lv~~ 494 (768)
++.++|||||||.+|+.+|+.++..+|++||||||..|+||.+|+. .+||++|+.++..+|+|++|||+|||| +++|
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~-~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISK-DGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCC-CccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 9999999999999999999999999999999999999999999874 579999999999999999999999999 6678
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeE
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~ 574 (768)
++++|+++.+++..+|+.+++...+++|||+||++|+|+.+... .++||+|++|+++|+.+++|.+..++||||+|+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~---~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSD---NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQ 239 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCC---CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEE
Confidence 89999999999999999999977779999999999999986442 489999999999999988888888899999999
Q ss_pred eEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCC
Q 004202 575 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 575 dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~ 653 (768)
++|+++ .|+| ++|+|.+|.|++||+|.++|.+..++|++|++++.+++.|.|||+|+|.|++++..++++|+||++++
T Consensus 240 ~v~~v~g~Gtv-v~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 240 DVYKIGGIGTV-PVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred EEEecCCceEE-EEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCC
Confidence 999999 8998 89999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred -CCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceE
Q 004202 654 -FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPV 732 (768)
Q Consensus 654 -~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI 732 (768)
.|+..+++|+|+|.||+++.||++||++++|+|+.+++|+|..|.+.+|.+||+..+++|++|++|+.+.|+|+|++||
T Consensus 319 ~~p~~~~~~f~a~i~~l~~~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi 398 (446)
T PTZ00141 319 NDPAKECADFTAQVIVLNHPGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPM 398 (446)
T ss_pred CCCCccceEEEEEEEEECCCCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCce
Confidence 5666789999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred EeecccccCCcceEEEEeCCcEEEEEEEEeeccc
Q 004202 733 CVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIED 766 (768)
Q Consensus 733 ~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~~ 766 (768)
|+++|++++.+|||+||+.|+|+|+|+|+.|...
T Consensus 399 ~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~ 432 (446)
T PTZ00141 399 CVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKK 432 (446)
T ss_pred EEeecccCCCCccEEEEECCCEEEEEEEEEEecC
Confidence 9999999999999999999999999999998743
No 5
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=7.3e-75 Score=653.85 Aligned_cols=419 Identities=40% Similarity=0.716 Sum_probs=396.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
++++++|+++||+|||||||+++|++..+.++...++++++++...|+.++.|+|++|..++|+++|+|++.....|+++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCC--CccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV--GSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~--g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
++.++|||||||++|.++++.++..+|++|||||+++ + ...|+++|+.++..++++++|||+||||++++
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~--------~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGG--------VMPQTREHVFLARTLGINQLIVAINKMDAVNY 154 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCC--------CCcchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 9999999999999999999999999999999999987 4 35789999999999998779999999999987
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeE
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~ 574 (768)
+.++++.+.+++..+++.+++....++++|+||++|+|+.++.. .++||+|++|+++|+.++++.+..++||+|+|+
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~---~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~ 231 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE---NMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQ 231 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc---CCCcccHHHHHHHHhcCCCCccccCCCcEEEEE
Confidence 77788889999999999888876668899999999999988653 489999999999999998888888899999999
Q ss_pred eEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCC
Q 004202 575 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 575 dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~ 653 (768)
++|.++ .|+| ++|+|++|+|++||+|+++|.+..++|++|++++.+++.|.|||+|+|.|++++..++++|+||++++
T Consensus 232 ~~~~~~g~G~v-v~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 232 DVYSISGVGTV-PVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred EEEeeCCCeEE-EEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 999999 9998 89999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEE
Q 004202 654 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVC 733 (768)
Q Consensus 654 ~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~ 733 (768)
.++..++.|+|++.||+++.+|++||++++|+|+.+++|+|.+|.+.+|.+|++..+++|++|++|+.|.|+|+|.+|+|
T Consensus 311 ~~~~~~~~f~a~v~~l~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~ 390 (425)
T PRK12317 311 NPPTVAEEFTAQIVVLQHPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLV 390 (425)
T ss_pred CCCCcccEEEEEEEEECCCCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeE
Confidence 88888999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred eecccccCCcceEEEEeCCcEEEEEEEEeecccC
Q 004202 734 VEEFSNCRALGRAFLRSSGRTIAVGIVTRIIEDQ 767 (768)
Q Consensus 734 ~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~~~ 767 (768)
+++|++++++|||+||++|+|+|+|+|+++.+.+
T Consensus 391 ~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~~ 424 (425)
T PRK12317 391 IEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPAK 424 (425)
T ss_pred EEeCCcCCCCccEEEEECCCeEEEEEEEEeccCC
Confidence 9999999999999999999999999999998754
No 6
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=3.1e-74 Score=648.84 Aligned_cols=421 Identities=38% Similarity=0.693 Sum_probs=397.3
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
+++.++|+++||+|||||||+++|++..+.++...+.++++++...|+++|.|+|++|..++|+++|+|++.+...|.++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
+..++|||||||++|.++++.++..+|++|||||++.+.|+ ...|+.+|+.++..++++++|||+||+|++++++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-----VQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-----cCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 99999999999999999999999999999999999998543 2468999999998899888999999999998778
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeEeE
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDV 576 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~dv 576 (768)
++++.+.+++..+++..++....++++|+||++|+|+.+... .++||+|++|+++|+.++++.+..+.||+|+|+++
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~---~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v 235 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE---NTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDV 235 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc---CCccccchHHHHHHhcCCCCCCccCCCcEEEEEEE
Confidence 889999999999999998876678999999999999987654 37999999999999999888887889999999999
Q ss_pred EeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCCCC
Q 004202 577 LKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 655 (768)
Q Consensus 577 ~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~p 655 (768)
|.++ .|+| ++|+|.+|.|++||+|+++|.+..++|++|++++.+++.|.|||+|+|+|++++..++++|+||++++.+
T Consensus 236 ~~~~g~G~v-v~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~ 314 (426)
T TIGR00483 236 YSITGVGTV-PVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNP 314 (426)
T ss_pred EecCCCeEE-EEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCC
Confidence 9999 9998 8999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEee
Q 004202 656 VAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVE 735 (768)
Q Consensus 656 ~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e 735 (768)
+..++.|+|++.||+++.||..||+++||+|+.+++|+|.+|...+|++|++..+++|++|++|+.|.|+|+|.+|+|++
T Consensus 315 ~~~~~~f~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e 394 (426)
T TIGR00483 315 PKVAKEFTAQIVVLQHPGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIE 394 (426)
T ss_pred CceeeEEEEEEEEECCCCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEe
Confidence 88899999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred cccccCCcceEEEEeCCcEEEEEEEEeeccc
Q 004202 736 EFSNCRALGRAFLRSSGRTIAVGIVTRIIED 766 (768)
Q Consensus 736 ~~~~~~~lGRfILR~~g~TvgvG~V~~v~~~ 766 (768)
+|++++.+|||+||+.|+|||+|+|+.+..+
T Consensus 395 ~~~~~~~~grf~lr~~g~tv~~G~v~~~~~~ 425 (426)
T TIGR00483 395 AVKEIPPLGRFAIRDMGQTVAAGMIIDVDPT 425 (426)
T ss_pred ecccCCCCccEEEEECCCEEEEEEEEEeeec
Confidence 9999999999999999999999999998754
No 7
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-73 Score=602.63 Aligned_cols=424 Identities=38% Similarity=0.694 Sum_probs=408.0
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
.++.+++++++||+++||||+-+.|++..+.++.+.++++++++++.++.+|+++|.||...+||+.|.|+.++..+|++
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc--ccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD--AVQ 493 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD--lv~ 493 (768)
..++++|+|+|||..|+++|+.++.+||+++||+.|..|.||.+|+. .+||+||..+++.+|+.++||++|||| .++
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFer-GgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhccccc-ccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 99999999999999999999999999999999999999999999997 689999999999999999999999999 568
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCC-CCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceee
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMP 572 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~-~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~ 572 (768)
|+.+||++++..+..+|+.+||... .+.|+|+|+++|.++.+..+ ..++||.|+++|..|+.++...|..++|+++|
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~--s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~p 311 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD--SVCPWYKGPIFLEYLDELPHLERILNGPIRCP 311 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc--ccCCcccCCccceehhccCcccccCCCCEEee
Confidence 9999999999999999999998753 47899999999999988654 57999999999999999998899999999999
Q ss_pred eEeEEeeCCCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccC
Q 004202 573 ICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 652 (768)
Q Consensus 573 I~dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~ 652 (768)
|.+-|+. .|+| +.|+|++|.|++|+.++++|.+..+.|.+|......++.+.||++|.|.|+||+.++|..|.|||++
T Consensus 312 I~~Kykd-mGTv-v~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~ 389 (501)
T KOG0459|consen 312 VANKYKD-MGTV-VGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSP 389 (501)
T ss_pred hhhhccc-cceE-EEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecC
Confidence 9999987 6999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceE
Q 004202 653 DFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPV 732 (768)
Q Consensus 653 ~~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI 732 (768)
++|....+.|.|+|.+|+|..-|.+||.+++|+|+.-..|.| +++..+|.+||+..|+.|+|++.|+.+.++|+...||
T Consensus 390 ~n~~~s~~~F~aqi~IlE~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~i 468 (501)
T KOG0459|consen 390 NNPCKSGRTFDAQIVILEHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPI 468 (501)
T ss_pred CCccccccEEEEEEEEEecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecCCcE
Confidence 999999999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred EeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004202 733 CVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 733 ~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
|++.|.++|++|||.||++|+|||+|+|+++.+
T Consensus 469 Cle~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 469 CLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred ehhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 999999999999999999999999999999864
No 8
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=2e-69 Score=614.85 Aligned_cols=410 Identities=30% Similarity=0.484 Sum_probs=377.0
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCC--CccchhhccccchhhhccCeEEEEEEEEEe
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFD 414 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk--~s~~~a~~~d~~~~Ere~GiTid~~~~~~~ 414 (768)
.+..++|+++||+|||||||+++|++..+.+..+.+.++++++...|+ ++|.|+|++|..++|+++|+|++.++..|.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 356799999999999999999999999999999999999999999997 489999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
+++++++|||||||++|..+|..++..+|++||||||..|. ..|+++|+.++..++++++|||+||||++++
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~--------~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV--------LDQTRRHSFIATLLGIKHLVVAVNKMDLVDY 175 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--------cccchHHHHHHHHhCCCceEEEEEeeccccc
Confidence 99999999999999999999999999999999999999884 5799999999999999888999999999988
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeE
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~ 574 (768)
++++++++++++..+++.+++. ...++||+||++|+|+.+... .++||+|++|+++|+.++++.+..+.||||+|+
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~---~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~ 251 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSE---SMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQ 251 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccc---cccccchhhHHHHHhhcCCCCCCCCCCceeeEE
Confidence 7888999999999888877742 357899999999999987543 479999999999999998887778899999999
Q ss_pred eEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCC
Q 004202 575 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 575 dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~ 653 (768)
++++.. .... +.|+|.+|.|++||+|+++|.+..++|++|++++.+++.|.|||+|+|+|++ ..++++|+|||+++
T Consensus 252 ~v~~~~~~~~g-~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~~ 328 (474)
T PRK05124 252 YVNRPNLDFRG-YAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAAD 328 (474)
T ss_pred EEEecCCcccc-eEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECCC
Confidence 998764 1122 5799999999999999999999999999999999999999999999999985 46799999999998
Q ss_pred CCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEE
Q 004202 654 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVC 733 (768)
Q Consensus 654 ~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~ 733 (768)
.++..++.|+|++.||+ +.||++|++++||+|+.+++|+|..|.+++|.+||+. .+|.+|++|+.|.|+|++++|+|
T Consensus 329 ~~~~~~~~f~a~i~~l~-~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~--~~~~~l~~g~~a~v~l~~~~pv~ 405 (474)
T PRK05124 329 EALQAVQHASADVVWMA-EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQ--REAENLPLNGIGLVELTFDEPLV 405 (474)
T ss_pred CCCccceEEEEEEEEeC-CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcc--cCccccCCCCEEEEEEEECCeec
Confidence 88788999999999997 6899999999999999999999999999999999984 46889999999999999999999
Q ss_pred eecccccCCcceEEE--EeCCcEEEEEEEEeec
Q 004202 734 VEEFSNCRALGRAFL--RSSGRTIAVGIVTRII 764 (768)
Q Consensus 734 ~e~~~~~~~lGRfIL--R~~g~TvgvG~V~~v~ 764 (768)
+++|+++++||||+| |+.++|||+|+|+++.
T Consensus 406 ~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 406 LDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred cccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 999999999999999 5689999999999865
No 9
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-70 Score=570.90 Aligned_cols=410 Identities=30% Similarity=0.519 Sum_probs=379.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCC--CccchhhccccchhhhccCeEEEEEEEEEe
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFD 414 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk--~s~~~a~~~d~~~~Ere~GiTid~~~~~~~ 414 (768)
.+..++++.||++|.|||||+++|+++...+-++++..+++.++..|. +.+.|++++|.++.||+.|||||+++++|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 346799999999999999999999999999999999999999875543 568999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
++++.|+|.|||||++|.++|..|++-||++|++|||..|+ ..||++|..++..||+++++|++|||||++|
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--------l~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy 154 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--------LEQTRRHSFIASLLGIRHVVVAVNKMDLVDY 154 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--------HHHhHHHHHHHHHhCCcEEEEEEeeeccccc
Confidence 99999999999999999999999999999999999999985 5799999999999999999999999999999
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeE
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~ 574 (768)
++++|++|+.++..+.+++++.. +.+||+||+.|+|+..++ ..|+||+|++||+.|+.+........+||||||+
T Consensus 155 ~e~~F~~I~~dy~~fa~~L~~~~--~~~IPiSAl~GDNV~~~s---~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ 229 (431)
T COG2895 155 SEEVFEAIVADYLAFAAQLGLKD--VRFIPISALLGDNVVSKS---ENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQ 229 (431)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCc--ceEEechhccCCcccccc---cCCCcccCccHHHHHhhccccccccccceeeceE
Confidence 99999999999999999999864 589999999999998754 3599999999999999988877777889999999
Q ss_pred eEEeeCCCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCCC
Q 004202 575 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 654 (768)
Q Consensus 575 dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~ 654 (768)
.|.+.......+.|+|.+|++++||+|.++|+|+..+|+.|..+...++.|.||+.|+|.|.. .-++.||++|++.+.
T Consensus 230 ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~d--eidisRGd~i~~~~~ 307 (431)
T COG2895 230 YVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLAD--EIDISRGDLIVAADA 307 (431)
T ss_pred EecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEcc--eeecccCcEEEccCC
Confidence 999877222226799999999999999999999999999999999999999999999999873 345889999999999
Q ss_pred CcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEe
Q 004202 655 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCV 734 (768)
Q Consensus 655 p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~ 734 (768)
++.++..|.|.++|+. ..||.+|..|.+.+++.++.|+|..|.+.+|.+|.+.. .+..|..|+.+.|++.+++|+++
T Consensus 308 ~~~~~~~f~A~vvWm~-~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~--~a~~l~lN~Ig~v~i~~~~pi~f 384 (431)
T COG2895 308 PPAVADAFDADVVWMD-EEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQE--GAESLPLNEIGRVRISFDKPIAF 384 (431)
T ss_pred CcchhhhcceeEEEec-CCCCCCCceEEEEecceEEEEEeeeeEEEEeccccccc--cccccCCCcceEEEEecCCceee
Confidence 9999999999999997 68999999999999999999999999999999998754 77899999999999999999999
Q ss_pred ecccccCCcceEEEEe--CCcEEEEEEEEeec
Q 004202 735 EEFSNCRALGRAFLRS--SGRTIAVGIVTRII 764 (768)
Q Consensus 735 e~~~~~~~lGRfILR~--~g~TvgvG~V~~v~ 764 (768)
++|.+++++|.|||.| .+.|+|+|+|.+-+
T Consensus 385 d~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l 416 (431)
T COG2895 385 DAYAENRATGSFILIDRLTNGTVGAGMILASL 416 (431)
T ss_pred cccccCcccccEEEEEcCCCCceeceeeechh
Confidence 9999999999999955 68899999998654
No 10
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=3.1e-69 Score=603.93 Aligned_cols=401 Identities=31% Similarity=0.527 Sum_probs=371.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCC--ccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKG--SFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~--s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
++|+++||+|||||||+++|++..+.+..+.+.++++++...|+. +|.|+|++|..++|+++|+|++.+...|.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999999999999999999999999999874 799999999999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
+++|||||||++|.++|+.++..+|++||||||..|. +.|+++|+.++..++++++|||+||||++++++++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~--------~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 152 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV--------LEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEV 152 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCC--------ccccHHHHHHHHHcCCCcEEEEEEecccccchHHH
Confidence 9999999999999999999999999999999999884 57999999999999998899999999999887888
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeEeEEe
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLK 578 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~dv~~ 578 (768)
++++++++..+++.+++. .++++|+||++|+|+.+... .++||+|++|+++|+.++++.+..+.||||+|+++++
T Consensus 153 ~~~i~~~~~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~---~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~ 227 (406)
T TIGR02034 153 FENIKKDYLAFAEQLGFR--DVTFIPLSALKGDNVVSRSE---SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNR 227 (406)
T ss_pred HHHHHHHHHHHHHHcCCC--CccEEEeecccCCCCccccc---CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEee
Confidence 899999999998888874 57899999999999987543 4899999999999999988877788999999999997
Q ss_pred eC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCCCCcc
Q 004202 579 SQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVA 657 (768)
Q Consensus 579 ~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~p~~ 657 (768)
.. .+.- ++|+|++|+|++||+|.++|.+..++|++|++++.+++.|.|||+|+|+|++ ..++++|+||++++.++.
T Consensus 228 ~~~~~~g-~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~ 304 (406)
T TIGR02034 228 PNLDFRG-YAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPE 304 (406)
T ss_pred cCCCcEE-EEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCC
Confidence 65 2333 6899999999999999999999999999999999999999999999999985 467999999999988888
Q ss_pred eeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecc
Q 004202 658 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEF 737 (768)
Q Consensus 658 ~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~ 737 (768)
.++.|+|++.|+++ .+|++|++++||+|+.+++|+|..|...+|.+||+. .+|++|++|+.|.|+|++++|+|+++|
T Consensus 305 ~~~~f~a~i~~l~~-~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~--~~~~~l~~~~~~~v~l~~~~p~~~~~~ 381 (406)
T TIGR02034 305 VADQFAATLVWMAE-EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEK--GAAKSLELNEIGRVNLSLDEPIAFDPY 381 (406)
T ss_pred cceEEEEEEEEeCh-hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcc--cCCcccCCCCEEEEEEEECCeeccCcc
Confidence 89999999999985 799999999999999999999999999999999984 467999999999999999999999999
Q ss_pred cccCCcceEEE--EeCCcEEEEEEE
Q 004202 738 SNCRALGRAFL--RSSGRTIAVGIV 760 (768)
Q Consensus 738 ~~~~~lGRfIL--R~~g~TvgvG~V 760 (768)
+++++||||+| |++|+|||+|+|
T Consensus 382 ~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 382 AENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred cCCCcceeEEEEECCCCCeEEEEeC
Confidence 99999999999 678999999986
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=6.8e-66 Score=606.59 Aligned_cols=409 Identities=28% Similarity=0.478 Sum_probs=376.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCC--CccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk--~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
+..++|+|+||+|||||||+|+|++..+.++.+.+.++++.+...|. ++|.|+|.+|..++|+++|+|++.+...|++
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 45689999999999999999999999999999999999999999997 8999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
++.+++|+|||||++|.++|+.++..+|++||||||..|. ..|+++|+.++..++++++|||+||||+++++
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~--------~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV--------LTQTRRHSFIASLLGIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc--------cccCHHHHHHHHHhCCCeEEEEEEecccccch
Confidence 9999999999999999999999999999999999999874 57999999999999988899999999999877
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeEe
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICD 575 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~d 575 (768)
+++++++..++..+++.+++. .++++|+||++|.|+.+... .++||.|++|+++|+.++++.+..++||||+|++
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~---~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~ 248 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLH--DVTFIPISALKGDNVVTRSA---RMPWYEGPSLLEHLETVEIASDRNLKDFRFPVQY 248 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCC--CccEEEEecccCCCcccccc---CCCcccHhHHHHHHhcCCCCCCcCCCCceeeEEE
Confidence 888999999999999888883 56889999999999987543 3799999999999999987777788999999999
Q ss_pred EEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCCC
Q 004202 576 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDF 654 (768)
Q Consensus 576 v~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~ 654 (768)
+++.. .+.- +.|+|++|+|++||+|.++|.+..++|++|++++.+++.|.|||+|+|+|++ ..++++|+|||+++.
T Consensus 249 v~~~~~~~~g-~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~ 325 (632)
T PRK05506 249 VNRPNLDFRG-FAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADN 325 (632)
T ss_pred EEecCCCceE-EEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCC
Confidence 98864 2222 6899999999999999999999999999999999999999999999999985 457999999999988
Q ss_pred CcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEe
Q 004202 655 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCV 734 (768)
Q Consensus 655 p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~ 734 (768)
++++++.|+|++.||++ .++.+|+++++|+|+.+++|+|..|...+|.+|++. ++|++|++|+.+.|+|++++|+|+
T Consensus 326 ~~~~~~~f~a~i~~l~~-~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g~~~~v~l~~~~pi~~ 402 (632)
T PRK05506 326 RPEVADQFDATVVWMAE-EPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELNEIGRCNLSTDAPIAF 402 (632)
T ss_pred CCcceeEEEEEEEEecc-cccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCCCEEEEEEEECCEEee
Confidence 88889999999999985 478899999999999999999999999999999873 689999999999999999999999
Q ss_pred ecccccCCcceEEEEe--CCcEEEEEEEEeecc
Q 004202 735 EEFSNCRALGRAFLRS--SGRTIAVGIVTRIIE 765 (768)
Q Consensus 735 e~~~~~~~lGRfILR~--~g~TvgvG~V~~v~~ 765 (768)
+.|+++++||||+||+ .|+|||+|+|+...+
T Consensus 403 e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~ 435 (632)
T PRK05506 403 DPYARNRTTGSFILIDRLTNATVGAGMIDFALR 435 (632)
T ss_pred eeccccccCceEEEEeccCCceEEEEEECcccc
Confidence 9999999999999954 899999999987653
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=9.2e-63 Score=558.64 Aligned_cols=390 Identities=30% Similarity=0.456 Sum_probs=343.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..+++++|+++||+|+|||||+++|++..+.+.....++ ...+|...+|+++|+|++.+...|++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 456789999999999999999999998877665433221 12578999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
++..++|||||||++|+++|+.++..+|++||||||..|. .+|+++|+.++..+|+|++||++||||+++ .
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~--------~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~-~ 212 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP--------MPQTKEHILLAKQVGVPNMVVFLNKQDQVD-D 212 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCeEEEEEecccccC-H
Confidence 9999999999999999999999999999999999999884 689999999999999998899999999986 3
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCC--CcccccccC-Ccchhhhhhcc-CCCCCCCCCCcee
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD--DGRLLSWYK-GPCLLDAIDSL-RPPPREFSKPLLM 571 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~--~~~~~~wy~-G~~LLe~L~~l-~~~~~~~~~plr~ 571 (768)
++.++.+.+++..+|+.++|....++++|+||++|.|+..... .....+||+ +++|+++|+++ +.|.+..+.||+|
T Consensus 213 ~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~ 292 (478)
T PLN03126 213 EELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLL 292 (478)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceee
Confidence 5668888889999999999977789999999999988742110 011248998 47899999775 4466777899999
Q ss_pred eeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCC--eeeEEEeeeecccccceeccCCceEEEecccccccccCCcc
Q 004202 572 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 648 (768)
Q Consensus 572 ~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~V 648 (768)
+|+++|+++ +|+| ++|+|++|.|++||+|.++|.+ ..++|++|++++.+++.|.|||+|+|+|++++..++++|+|
T Consensus 293 ~I~~vf~v~g~GtV-v~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~V 371 (478)
T PLN03126 293 AVEDVFSITGRGTV-ATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMV 371 (478)
T ss_pred EEEEEEEeCCceEE-EEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccE
Confidence 999999999 9998 8999999999999999999986 47899999999999999999999999999999999999999
Q ss_pred cccCCCCcceeeEEEEEEEeeCCC-----CCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEE
Q 004202 649 LCHPDFPVAIATHLELKVLVLDFA-----PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 723 (768)
Q Consensus 649 L~~~~~p~~~~~~F~a~i~vl~~~-----~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~ 723 (768)
|++++. ++.++.|+|++.||+++ .||..||++.+|+|+.+++|+|..|....| ++|++|++|+.+.
T Consensus 372 L~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~~l~~gd~a~ 442 (478)
T PLN03126 372 LAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESKMVMPGDRVK 442 (478)
T ss_pred EecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCccEeCCCCEEE
Confidence 999875 44579999999999975 699999999999999999999999965433 3478999999999
Q ss_pred EEEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004202 724 VEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 724 v~l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
|+|+|.+|+|+++ ++||+||+.|+|+|+|+|+++++
T Consensus 443 v~l~~~~Pi~~~~------~~RfilR~~~~Tva~G~V~~v~~ 478 (478)
T PLN03126 443 MVVELIVPVACEQ------GMRFAIREGGKTVGAGVIQSIIE 478 (478)
T ss_pred EEEEECCeEEEcc------CCEEEEecCCceEEEEEEEEecC
Confidence 9999999999986 57999999999999999999863
No 13
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.3e-62 Score=545.84 Aligned_cols=380 Identities=32% Similarity=0.469 Sum_probs=335.7
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 004202 335 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 414 (768)
Q Consensus 335 ~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~ 414 (768)
+..+++++|+++||+|||||||+++|++.. ...|++.+...+.+|..++|+++|+|++.+...+.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~ 71 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE 71 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhh---------------hhcCCcccchhhhccCChhHHhcCceEEEeeeEEc
Confidence 345678999999999999999999999632 12345555444679999999999999999999998
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
+++.+++|+|||||++|+++++.++..+|++||||||..|. ..|+++|+.++..+++|.+|||+||||+++
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~--------~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~- 142 (396)
T PRK12735 72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP--------MPQTREHILLARQVGVPYIVVFLNKCDMVD- 142 (396)
T ss_pred CCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC--------chhHHHHHHHHHHcCCCeEEEEEEecCCcc-
Confidence 88999999999999999999999999999999999999873 579999999999999997667899999985
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCC-cchhhhhhc-cCCCCCCCCCCceee
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMP 572 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G-~~LLe~L~~-l~~~~~~~~~plr~~ 572 (768)
.++.++.+..++..+++.+++...+++++|+||++|.|... .++||.+ ++|+++|+. +++|.+..++||+|+
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~------~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDD------DEEWEAKILELMDAVDSYIPEPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCC------CCcccccHHHHHHHHHhcCCCCCccCCCCeEEE
Confidence 35667778889999999988865568999999999999632 3789975 899999976 455667778999999
Q ss_pred eEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccC--CeeeEEEeeeecccccceeccCCceEEEecccccccccCCccc
Q 004202 573 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 649 (768)
Q Consensus 573 I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL 649 (768)
|+++|+++ .|+| ++|+|++|+|++||+|+++|. +..++|++|++++++++.|.|||+|+|+|++++..++++|+||
T Consensus 217 I~~~f~v~g~Gtv-v~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl 295 (396)
T PRK12735 217 IEDVFSISGRGTV-VTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVL 295 (396)
T ss_pred EEEEEecCCceEE-EEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEE
Confidence 99999999 9998 899999999999999999997 4689999999999999999999999999999999999999999
Q ss_pred ccCCCCcceeeEEEEEEEeeCC-----CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEE
Q 004202 650 CHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 724 (768)
Q Consensus 650 ~~~~~p~~~~~~F~a~i~vl~~-----~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v 724 (768)
|+++. +..++.|+|++.+|++ +++|..||++++|+|+.+++|+|.. .++|++|++|+.+.|
T Consensus 296 ~~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v 361 (396)
T PRK12735 296 AKPGS-IKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIEL-------------PEGVEMVMPGDNVKM 361 (396)
T ss_pred EcCCC-CCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEc-------------cCCCceeCCCCEEEE
Confidence 99874 4557999999999997 5799999999999999999999841 124678999999999
Q ss_pred EEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004202 725 EVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 725 ~l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
+|+|++|+|++++ |||+||+.|+|+|+|+|+++++
T Consensus 362 ~l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~~ 396 (396)
T PRK12735 362 TVELIAPIAMEEG------LRFAIREGGRTVGAGVVAKIIE 396 (396)
T ss_pred EEEECceEEEeEC------CEEEEEcCCcEEEEEEEEEecC
Confidence 9999999999985 6999999999999999999863
No 14
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=3.7e-62 Score=547.54 Aligned_cols=390 Identities=29% Similarity=0.470 Sum_probs=342.5
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..+++++|+++||+|||||||+++|++..+.+..... +.++ .+|..++|+++|+|++.....|.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~--------------~~~~-~~d~~~~e~~rg~T~~~~~~~~~~ 72 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA--------------KKYD-EIDSAPEEKARGITINTAHVEYET 72 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc--------------cccc-cccCChhhhcCCEeEEccEEEEcc
Confidence 3567899999999999999999999987776543321 1122 578999999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
++.+++|+|||||.+|++++++++..+|++|+||||..|. ..|+++|+.++..+++|++|||+||||++++
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~--------~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~- 143 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP--------MPQTKEHILLAKQVGVPNIVVFLNKEDQVDD- 143 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCEEEEEEEccCCCCH-
Confidence 9999999999999999999999999999999999999874 5799999999999999988899999999863
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCC--cccccccCC-cchhhhhhcc-CCCCCCCCCCcee
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD--GRLLSWYKG-PCLLDAIDSL-RPPPREFSKPLLM 571 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~--~~~~~wy~G-~~LLe~L~~l-~~~~~~~~~plr~ 571 (768)
.+.++.+.+++..+|+.+++....++++|+||++|+|+...... ....+||++ ++|+++|..+ ++|.++.+.||+|
T Consensus 144 ~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~ 223 (409)
T CHL00071 144 EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLM 223 (409)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEE
Confidence 45678888999999999998766789999999999998653321 112589985 8999999764 5566777899999
Q ss_pred eeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccC--CeeeEEEeeeecccccceeccCCceEEEecccccccccCCcc
Q 004202 572 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 648 (768)
Q Consensus 572 ~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~V 648 (768)
+|+++|.++ .|+| ++|+|.+|+|++||+|.+.|. +..++|++|++++.+++.|.|||+|+|+|++++..++++|+|
T Consensus 224 ~I~~v~~~~g~G~V-v~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~v 302 (409)
T CHL00071 224 AIEDVFSITGRGTV-ATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMV 302 (409)
T ss_pred EEEEEEEeCCCeEE-EEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEE
Confidence 999999999 9998 899999999999999998874 567999999999999999999999999999999899999999
Q ss_pred cccCCCCcceeeEEEEEEEeeCC-----CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEE
Q 004202 649 LCHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAI 723 (768)
Q Consensus 649 L~~~~~p~~~~~~F~a~i~vl~~-----~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~ 723 (768)
|++++. +..++.|+|++.+|++ ++||.+||++++|+|+.+++|+|..|... + .++|++|++|+.+.
T Consensus 303 l~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~----~~~~~~l~~g~~a~ 373 (409)
T CHL00071 303 LAKPGT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----D----GSKTEMVMPGDRIK 373 (409)
T ss_pred EecCCC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----C----CCCCcEecCCCEEE
Confidence 999875 4568999999999997 67999999999999999999999988642 1 24688999999999
Q ss_pred EEEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004202 724 VEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 724 v~l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
|+|+|.+|+|++++ |||+||+.|+|+|+|+|+++++
T Consensus 374 v~l~~~~pi~~e~~------~rfilR~~~~tig~G~V~~~~~ 409 (409)
T CHL00071 374 MTVELIYPIAIEKG------MRFAIREGGRTVGAGVVSKILK 409 (409)
T ss_pred EEEEECCeEEEeeC------CEEEEecCCeEEEEEEEEEecC
Confidence 99999999999985 6999999999999999999863
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1e-61 Score=541.64 Aligned_cols=379 Identities=32% Similarity=0.477 Sum_probs=333.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..+++++|+++||+|||||||+++|++.. ...|.+.....+.+|..++|+++|+|++.+...+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~ 72 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET 72 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhh---------------hhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC
Confidence 34678999999999999999999999632 112222222223789999999999999999999988
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
++.+++|+|||||.+|+.++..++..+|++++||||..|. ..|+++|+.++..+++|.+||++||||+++ .
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~--------~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~-~ 143 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP--------MPQTREHILLARQVGVPYIVVFLNKCDMVD-D 143 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC--------chHHHHHHHHHHHcCCCEEEEEEeecCCcc-h
Confidence 8999999999999999999999999999999999999873 579999999999999996667999999986 3
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCC-cchhhhhhc-cCCCCCCCCCCceeee
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMPI 573 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G-~~LLe~L~~-l~~~~~~~~~plr~~I 573 (768)
++.++.+..++..+++.+++...+++++|+||++|.+.. ..++||+| ++|+++|++ ++.|.+..++||+|+|
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~------~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I 217 (396)
T PRK00049 144 EELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGD------DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPI 217 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCC------CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEE
Confidence 566777888999999999987667899999999997731 24799986 799999987 5567777889999999
Q ss_pred EeEEeeC-CCcEEEEEEEecCcccCCCEEEEccC--CeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccc
Q 004202 574 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 574 ~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
+++|+++ .|+| ++|+|.+|+|++||+|.++|. +..++|++|++++.++++|.|||+|+|+|++++..++++|+|||
T Consensus 218 ~~~f~v~g~G~V-v~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~ 296 (396)
T PRK00049 218 EDVFSISGRGTV-VTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLA 296 (396)
T ss_pred EEEEeeCCceEE-EEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEe
Confidence 9999999 9998 899999999999999999987 67899999999999999999999999999999989999999999
Q ss_pred cCCCCcceeeEEEEEEEeeCC-----CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEE
Q 004202 651 HPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVE 725 (768)
Q Consensus 651 ~~~~p~~~~~~F~a~i~vl~~-----~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~ 725 (768)
+++. ++.++.|+|++.+|++ +++|+.||++++|+|+.+++|+|. + .++|++|++|+.+.|+
T Consensus 297 ~~~~-~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l------------~~~~~~l~~g~~a~v~ 362 (396)
T PRK00049 297 KPGS-ITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-L------------PEGVEMVMPGDNVEMT 362 (396)
T ss_pred cCCC-CCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-e------------cCCCcccCCCCEEEEE
Confidence 9874 4457999999999997 689999999999999999999982 2 1357899999999999
Q ss_pred EEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004202 726 VALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 726 l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
|+|.+|+|++++ |||+||+.|+|+|+|+|+++++
T Consensus 363 i~~~~p~~~e~~------~RfilR~~g~t~~~G~V~~v~~ 396 (396)
T PRK00049 363 VELIAPIAMEEG------LRFAIREGGRTVGAGVVTKIIE 396 (396)
T ss_pred EEECceEEEeeC------CEEEEecCCcEEEEEEEEEecC
Confidence 999999999985 6999999999999999999873
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.5e-61 Score=540.15 Aligned_cols=377 Identities=30% Similarity=0.468 Sum_probs=332.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..+++++|+++||+|||||||+++|++.. ...|++.+...+.+|..++|+++|+|++.+...|.+
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~ 72 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVL---------------AERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET 72 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhh---------------hhhccccccchhhhcCCHHHHhcCccEEEEeeEecC
Confidence 35678999999999999999999999421 123555554445799999999999999999999988
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
++++++|||||||++|+.+++.++..+|++|||||+..|. ..|+++|+.++..+|+|++|||+||||+++ +
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~--------~~~t~~~~~~~~~~g~~~~IvviNK~D~~~-~ 143 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP--------MPQTREHILLARQVGVPYLVVFLNKVDLVD-D 143 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC--------chhHHHHHHHHHHcCCCEEEEEEEecCCcc-h
Confidence 8999999999999999999999999999999999999873 679999999999999998889999999985 2
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCC-cchhhhhhc-cCCCCCCCCCCceeee
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMPI 573 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G-~~LLe~L~~-l~~~~~~~~~plr~~I 573 (768)
++.++.+.+++..+++..++....++++|+||++|.+. ..+||.+ .+|+++|.. ++.+.+..++||+|+|
T Consensus 144 ~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~--------~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I 215 (394)
T PRK12736 144 EELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEG--------DPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPV 215 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccC--------CCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEE
Confidence 45677788899999999998766789999999999542 1479975 789999965 5667777789999999
Q ss_pred EeEEeeC-CCcEEEEEEEecCcccCCCEEEEccC--CeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccc
Q 004202 574 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 574 ~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
+++|.++ .|+| ++|+|++|+|++||+|+++|. +..++|++|++++.+++.|.|||+|+|+|++++..++++|+|||
T Consensus 216 ~~~~~~~g~G~V-v~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~ 294 (394)
T PRK12736 216 EDVFTITGRGTV-VTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLA 294 (394)
T ss_pred EEEEecCCcEEE-EEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEe
Confidence 9999999 9998 899999999999999999998 66899999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeEEEEEEEeeCC-----CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEE
Q 004202 651 HPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVE 725 (768)
Q Consensus 651 ~~~~p~~~~~~F~a~i~vl~~-----~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~ 725 (768)
+++.+ .+++.|+|++.+|++ +++|..||++++|+|+.+++|+|.. .++|++|++|+.+.|+
T Consensus 295 ~~~~~-~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 360 (394)
T PRK12736 295 KPGSI-KPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL-------------PEGTEMVMPGDNVTIT 360 (394)
T ss_pred cCCCC-CcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe-------------cCCcceeCCCCEEEEE
Confidence 98754 457899999999987 4899999999999999999999842 1246789999999999
Q ss_pred EEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004202 726 VALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 726 l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
|+|.+|+|++++ +||+||+.|+|+|+|+|+++++
T Consensus 361 l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~~ 394 (394)
T PRK12736 361 VELIHPIAMEQG------LKFAIREGGRTVGAGTVTEILD 394 (394)
T ss_pred EEECceEEEeeC------CEEEEecCCcEEEEEEEEEeeC
Confidence 999999999985 5999999999999999999863
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=4.7e-61 Score=536.45 Aligned_cols=376 Identities=31% Similarity=0.476 Sum_probs=332.2
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..+++++|+++||+|||||||+++|++.. ...|++.+...+.+|..++|+++|+|++.+...+..
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~---------------~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~ 72 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVL---------------AKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhH---------------HHhhcccccccccccCCHHHHhcCcceeeEEEEEcC
Confidence 34678999999999999999999998531 124555555557899999999999999999999988
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
++++++|||||||++|+.+++.++..+|++||||||..|. ..|+++|+.++..+++|++|||+||||++++
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~--------~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~- 143 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGP--------MPQTREHILLARQVGVPYIVVFLNKCDMVDD- 143 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCEEEEEEEecccCCH-
Confidence 8999999999999999999999999999999999999873 5799999999999999977789999999863
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCC-cchhhhhhcc-CCCCCCCCCCceeee
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDSL-RPPPREFSKPLLMPI 573 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G-~~LLe~L~~l-~~~~~~~~~plr~~I 573 (768)
++.++.+.+++..+++..++...+++++++||++|.+. ..+||.+ ++|+++|+.+ +.|.++.++||+|+|
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g--------~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V 215 (394)
T TIGR00485 144 EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEG--------DAEWEAKILELMDAVDEYIPTPERETDKPFLMPI 215 (394)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCccEEECcccccccc--------CCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEE
Confidence 45667778899999999888766689999999999643 1479975 8899999775 456677789999999
Q ss_pred EeEEeeC-CCcEEEEEEEecCcccCCCEEEEccC--CeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccc
Q 004202 574 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 574 ~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
+++|+++ .|+| ++|+|.+|.|++||+|.++|. +..++|++|++++.+++.|.|||+|+|+|++++..++++|+||+
T Consensus 216 ~~vf~~~g~G~V-v~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 216 EDVFSITGRGTV-VTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred EEEEeeCCceEE-EEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEe
Confidence 9999999 9998 899999999999999999985 57899999999999999999999999999999888999999999
Q ss_pred cCCCCcceeeEEEEEEEeeCC-----CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEE
Q 004202 651 HPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVE 725 (768)
Q Consensus 651 ~~~~p~~~~~~F~a~i~vl~~-----~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~ 725 (768)
+++. +..++.|+|++.||++ ++||..|+++.+|+|+.+++|+|..+ ++|++|++|+.+.|+
T Consensus 295 ~~~~-~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~~-------------~~~~~l~~g~~a~v~ 360 (394)
T TIGR00485 295 KPGS-IKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLP-------------EGVEMVMPGDNVKMT 360 (394)
T ss_pred cCCC-CCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEec-------------CCcceeCCCCEEEEE
Confidence 9865 4457999999999987 47999999999999999999999622 246889999999999
Q ss_pred EEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeec
Q 004202 726 VALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRII 764 (768)
Q Consensus 726 l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~ 764 (768)
|+|++|+|++++ +||+||+.|+|+|+|+|++++
T Consensus 361 ~~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T TIGR00485 361 VELISPIALEQG------MRFAIREGGRTVGAGVVSKII 393 (394)
T ss_pred EEECceEEEeEC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999984 699999999999999999986
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.3e-59 Score=530.33 Aligned_cols=375 Identities=31% Similarity=0.485 Sum_probs=326.0
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhh-ccccchhhhccCeEEEEEEEEEe
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAW-ALDESAEERERGITMTVAVAYFD 414 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~-~~d~~~~Ere~GiTid~~~~~~~ 414 (768)
..+++++|+++||+|||||||+++|++.. ...|+.. ..+| .+|..++|+++|+|++.+...|+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~-~~~~~~~D~~~~E~~rGiTi~~~~~~~~ 120 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAK-AVAFDEIDKAPEEKARGITIATAHVEYE 120 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhccc-ceeeccccCChhHhhcCceeeeeEEEEc
Confidence 45678999999999999999999997421 1123321 2222 58999999999999999999999
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
+++++++|+|||||.+|+.+|+.++..+|++||||||..|. ++|+++|+.++..+++|++|||+||||++++
T Consensus 121 ~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~--------~~qt~e~l~~~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 121 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP--------MPQTKEHILLARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred CCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCC--------chhHHHHHHHHHHcCCCeEEEEEEeeccCCH
Confidence 99999999999999999999999999999999999999874 5799999999999999977899999999863
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeeccc---CCCcccCCCCcccccccCCcchhhhhhcc-CCCCCCCCCCce
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE---NQNLVTAPDDGRLLSWYKGPCLLDAIDSL-RPPPREFSKPLL 570 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~t---G~gI~e~~~~~~~~~wy~G~~LLe~L~~l-~~~~~~~~~plr 570 (768)
++.++.+..++..+++.+++....++++|+||++ |.|+. ..|..+++|+++|+.+ +.|.+..++||+
T Consensus 193 -~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~--------~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr 263 (447)
T PLN03127 193 -EELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDE--------IGKNAILKLMDAVDEYIPEPVRVLDKPFL 263 (447)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcc--------cccchHHHHHHHHHHhCCCCCcccccceE
Confidence 4566777778888888888876678999998874 44431 2456677899999764 567777789999
Q ss_pred eeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccC----CeeeEEEeeeecccccceeccCCceEEEecccccccccC
Q 004202 571 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS----GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMS 645 (768)
Q Consensus 571 ~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~----~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~r 645 (768)
|+|+++|+++ .|+| ++|+|++|.|++||+|.++|. +..++|++|++++.+++.|.|||+|+|+|++++..++++
T Consensus 264 ~~I~~vf~v~g~GtV-vtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~r 342 (447)
T PLN03127 264 MPIEDVFSIQGRGTV-ATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQR 342 (447)
T ss_pred eeEEEEEEcCCceEE-EEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCC
Confidence 9999999999 9998 899999999999999999975 458999999999999999999999999999999999999
Q ss_pred CcccccCCCCcceeeEEEEEEEeeCC-----CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCC
Q 004202 646 GGVLCHPDFPVAIATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQ 720 (768)
Q Consensus 646 G~VL~~~~~p~~~~~~F~a~i~vl~~-----~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd 720 (768)
|+||++++. +..++.|+|++.+|++ ++||..||++++|+|+.+++|+|.. .++|++|++|+
T Consensus 343 G~Vl~~~~~-~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~-------------~~~~~~l~~gd 408 (447)
T PLN03127 343 GQVICKPGS-IKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVEL-------------PEGVKMVMPGD 408 (447)
T ss_pred ccEEecCCC-CceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEe-------------ccCccccCCCC
Confidence 999999854 5678999999999997 3799999999999999999999942 13468999999
Q ss_pred eEEEEEEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeec
Q 004202 721 SAIVEVALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRII 764 (768)
Q Consensus 721 ~a~v~l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~ 764 (768)
.+.|+|+|.+|+|++++ |||+||+.|+|+|+|+|++|+
T Consensus 409 ~a~v~l~~~~p~~le~g------~RfilR~~g~Tvg~G~V~~v~ 446 (447)
T PLN03127 409 NVTAVFELISPVPLEPG------QRFALREGGRTVGAGVVSKVL 446 (447)
T ss_pred EEEEEEEECceEEEeeC------CEEEEEeCCcEEEEEEEEEec
Confidence 99999999999999874 699999999999999999986
No 19
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-56 Score=454.03 Aligned_cols=377 Identities=33% Similarity=0.520 Sum_probs=327.1
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..+++.||+.|||+|+|||||..+|+..+.. ..+....+|. ..|..++|+++||||+.++..+++
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~--------------~~~~~~~~y~-~id~aPeEk~rGITIntahveyet 72 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAK--------------KGGAEAKAYD-QIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHh--------------hccccccchh-hhccCchHhhcCceeccceeEEec
Confidence 4568899999999999999999999854221 1111122222 247789999999999999999999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
.++.+..+|+|||.+|+++|+.++.++|++||||.|.+| .++||+||+.++++.|+|.++|++||+|+++ +
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dG--------pmPqTrEHiLlarqvGvp~ivvflnK~Dmvd-d 143 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYIVVFLNKVDMVD-D 143 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCC--------CCCcchhhhhhhhhcCCcEEEEEEecccccC-c
Confidence 999999999999999999999999999999999999998 5899999999999999999999999999997 5
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCC-cchhhhhhc-cCCCCCCCCCCceeee
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS-LRPPPREFSKPLLMPI 573 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G-~~LLe~L~~-l~~~~~~~~~plr~~I 573 (768)
++.++.+..+++.+|..++|.....|++--||+..-.-. .+|... ..|++++++ ++.|.++.++||+|||
T Consensus 144 ~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~--------~~~~~~i~eLm~avd~yip~Per~~dkPflmpv 215 (394)
T COG0050 144 EELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGD--------AKWEAKIEELMDAVDSYIPTPERDIDKPFLMPV 215 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCC--------cchHHHHHHHHHHHHhcCCCCCCcccccccccc
Confidence 889999999999999999999888999988887543211 234432 458999954 6888899999999999
Q ss_pred EeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCC--eeeEEEeeeecccccceeccCCceEEEecccccccccCCcccc
Q 004202 574 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG--EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 574 ~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~--~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
.++|++. .|+| ++|||++|+|++|+.+.+.-.. ++.+|.+|+++++..+++.||++|++.|.|+...++.||+||+
T Consensus 216 EdvfsIsgrgtv-vtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLa 294 (394)
T COG0050 216 EDVFSISGRGTV-VTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLA 294 (394)
T ss_pred eeeEEEcCceeE-EEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEee
Confidence 9999999 9999 8999999999999999986544 4678999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeEEEEEEEeeC-----CCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEE
Q 004202 651 HPDFPVAIATHLELKVLVLD-----FAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVE 725 (768)
Q Consensus 651 ~~~~p~~~~~~F~a~i~vl~-----~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~ 725 (768)
.|+. +.+..+|+|++++|. ..+|...||++.||+.+..++..+. + ......+.+|+.+.+.
T Consensus 295 kpgs-i~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~-l------------~eg~emvmpgdnv~~~ 360 (394)
T COG0050 295 KPGS-IKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAIT-L------------PEGVEMVMPGDNVKMV 360 (394)
T ss_pred cCCc-ccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEe-c------------cCCcceecCCCceEEE
Confidence 9886 555789999999996 3589999999999999998888553 2 1123679999999999
Q ss_pred EEeCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004202 726 VALQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 726 l~l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
++|..||.+++.. ||.+|..|||+|.|+|++|.+
T Consensus 361 veLi~pia~e~G~------rFaIreGgrtvgaGvV~~i~~ 394 (394)
T COG0050 361 VELIHPIAMEEGL------RFAIREGGRTVGAGVVTKIIE 394 (394)
T ss_pred EEEeeeeecCCCC------EEEEEeCCeeeeeeEEeeecC
Confidence 9999999999976 999999999999999999863
No 20
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-56 Score=465.62 Aligned_cols=379 Identities=33% Similarity=0.485 Sum_probs=328.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.+++.||+.+||+|+|||||..+++.-+.. ..+.....|. ..|..++|+.|||||+.++..+++.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~--------------~g~A~~~kyd-eID~APEEkaRGITIn~aHveYeTa 115 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAE--------------KGGAKFKKYD-EIDKAPEEKARGITINAAHVEYETA 115 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHh--------------ccccccccHh-hhhcChhhhhccceEeeeeeeeecc
Confidence 467899999999999999999999843221 1111122222 3588899999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
.+++--+|+|||.+|+++|+.|+++.|.+||||.|++| .++||+||+.++++.|+++++|.+||.|+++ ++
T Consensus 116 ~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG--------~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~-d~ 186 (449)
T KOG0460|consen 116 KRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDG--------PMPQTREHLLLARQVGVKHIVVFINKVDLVD-DP 186 (449)
T ss_pred ccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCC--------CCcchHHHHHHHHHcCCceEEEEEecccccC-CH
Confidence 99999999999999999999999999999999999998 5899999999999999999999999999996 47
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhc-cCCCCCCCCCCceeeeEe
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPREFSKPLLMPICD 575 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~-l~~~~~~~~~plr~~I~d 575 (768)
+.++-+.-+++++|..+||+..++|+|.-||+.---=.++. .. .. .-..||+++++ +|.|.|+.++||.|||.+
T Consensus 187 e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~pe-ig-~~---aI~kLldavDsyip~P~R~~~~pFl~pie~ 261 (449)
T KOG0460|consen 187 EMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPE-IG-LE---AIEKLLDAVDSYIPTPERDLDKPFLLPIED 261 (449)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCcc-cc-HH---HHHHHHHHHhccCCCcccccCCCceeehhh
Confidence 88899999999999999999999999998877432111100 00 00 00238999976 889999999999999999
Q ss_pred EEeeC-CCcEEEEEEEecCcccCCCEEEEccCCe--eeEEEeeeecccccceeccCCceEEEecccccccccCCcccccC
Q 004202 576 VLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE--VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 652 (768)
Q Consensus 576 v~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~--~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~ 652 (768)
+|.++ +|+| ++|+|++|+|++|+++.|...++ ..+|..|+++++.+++|.|||++++.|.|+.+++++|||||+.|
T Consensus 262 vfsI~GRGTV-vtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~p 340 (449)
T KOG0460|consen 262 VFSIPGRGTV-VTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKP 340 (449)
T ss_pred eeeecCCceE-EEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecC
Confidence 99999 9999 89999999999999999987654 78899999999999999999999999999999999999999999
Q ss_pred CCCcceeeEEEEEEEeeC-----CCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEE
Q 004202 653 DFPVAIATHLELKVLVLD-----FAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVA 727 (768)
Q Consensus 653 ~~p~~~~~~F~a~i~vl~-----~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~ 727 (768)
+. ..+..+|+|++++|. ..+|+..+|++.+|+.++.++++|.-+.. ...+.||+.+.+++.
T Consensus 341 Gs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~~-------------~~mvMPGe~~~~~~~ 406 (449)
T KOG0460|consen 341 GS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPPE-------------KEMVMPGENVKVEVT 406 (449)
T ss_pred Cc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccCh-------------HhcccCCCCeEEEEE
Confidence 87 677899999999996 45899999999999999999999963311 257999999999999
Q ss_pred eCceEEeecccccCCcceEEEEeCCcEEEEEEEEeecc
Q 004202 728 LQEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIE 765 (768)
Q Consensus 728 l~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~ 765 (768)
|.+|+++++.. ||.||+.|+|||.|+|+.+++
T Consensus 407 Li~pm~le~Gq------rFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 407 LIRPMPLEKGQ------RFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred EecccccCCCc------eeeEccCCeeeeeeeEeeeee
Confidence 99999999865 999999999999999999875
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=5.1e-53 Score=476.19 Aligned_cols=343 Identities=24% Similarity=0.343 Sum_probs=295.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-- 415 (768)
.+.++|+++||+|||||||+++|++. .++++++|.++|+|+++++..+..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~----------------------------~~~r~~~E~~rGiTi~lGfa~~~~~~ 83 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGV----------------------------KTVRFKREKVRNITIKLGYANAKIYK 83 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCC----------------------------CcccchhhHHhCCchhcccccccccc
Confidence 46799999999999999999999931 356788999999999999886521
Q ss_pred -------------C------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccch
Q 004202 416 -------------K------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAK 464 (768)
Q Consensus 416 -------------~------------------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~ 464 (768)
. .+.++|+|||||++|+++|+.++..+|++||||||..+. .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~-------~~ 156 (460)
T PTZ00327 84 CPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC-------PQ 156 (460)
T ss_pred CcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-------cc
Confidence 1 247999999999999999999999999999999999752 25
Q ss_pred hhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCccccc
Q 004202 465 GLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLS 544 (768)
Q Consensus 465 ~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~ 544 (768)
+||++|+.++..++++++|||+||||+++ .++++++.+++..+++.... ...++||+||++|+|+..
T Consensus 157 ~qT~ehl~i~~~lgi~~iIVvlNKiDlv~--~~~~~~~~~ei~~~l~~~~~--~~~~iipVSA~~G~nI~~--------- 223 (460)
T PTZ00327 157 PQTSEHLAAVEIMKLKHIIILQNKIDLVK--EAQAQDQYEEIRNFVKGTIA--DNAPIIPISAQLKYNIDV--------- 223 (460)
T ss_pred hhhHHHHHHHHHcCCCcEEEEEecccccC--HHHHHHHHHHHHHHHHhhcc--CCCeEEEeeCCCCCCHHH---------
Confidence 79999999999999998999999999985 45566667777777765432 457899999999999954
Q ss_pred ccCCcchhhhhh-ccCCCCCCCCCCceeeeEeEEeeC---------CCcEEEEEEEecCcccCCCEEEEccCC-------
Q 004202 545 WYKGPCLLDAID-SLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSG------- 607 (768)
Q Consensus 545 wy~G~~LLe~L~-~l~~~~~~~~~plr~~I~dv~~~~---------~G~V~v~G~V~sG~L~~Gd~v~i~P~~------- 607 (768)
|+++|. .++++.++.+.||+|+|+++|.+. .|+| ++|+|.+|+|++||+|.++|.+
T Consensus 224 ------Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtV-v~G~v~~G~l~~Gd~v~i~P~~~~~~~~g 296 (460)
T PTZ00327 224 ------VLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGV-AGGSILQGVLKVGDEIEIRPGIISKDSGG 296 (460)
T ss_pred ------HHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEE-EEEEEeeceEecCCEEEEccCcccccccC
Confidence 999997 677777778899999999999764 4888 8999999999999999999975
Q ss_pred ------eeeEEEeeeecccccceeccCCceEEEec---ccccccccCCcccccCCCCcceeeEEEEEEEeeCCC------
Q 004202 608 ------EVGTVHSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDFA------ 672 (768)
Q Consensus 608 ------~~~~VksI~~~~~~v~~A~aGd~V~l~L~---gi~~~~i~rG~VL~~~~~p~~~~~~F~a~i~vl~~~------ 672 (768)
..++|++||+++.++++|.|||+|+|+|+ +++..++.||+||++++.+++.++.|+|++.||.+.
T Consensus 297 ~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~ 376 (460)
T PTZ00327 297 EFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQ 376 (460)
T ss_pred ccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEeccccccccc
Confidence 35799999999999999999999999998 788889999999999988777788999999999762
Q ss_pred --------CCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcc
Q 004202 673 --------PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALG 744 (768)
Q Consensus 673 --------~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~~~~~~lG 744 (768)
.||+.|++++||+|+.+++|+|..|.. +. .++|+|.+|+|+...+
T Consensus 377 ~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~~--------------------~~-~~~l~l~~P~~~~~gd------ 429 (460)
T PTZ00327 377 DGKKATKVAKLKKGESLMINIGSTTTGGRVVGIKD--------------------DG-IAKLELTTPVCTSVGE------ 429 (460)
T ss_pred ccccccCCcccCCCCEEEEEecccEEEEEEEEeCC--------------------Ce-EEEEEECccEeccCCC------
Confidence 799999999999999999999987621 00 6778899999999876
Q ss_pred eEEEEeC----CcEEEEEEEEe
Q 004202 745 RAFLRSS----GRTIAVGIVTR 762 (768)
Q Consensus 745 RfILR~~----g~TvgvG~V~~ 762 (768)
||+||+. .+|+|+|.|..
T Consensus 430 r~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 430 KIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred EEEEEeccCCCcEEEEEEEEcC
Confidence 9999853 48999999874
No 22
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=2.2e-53 Score=448.38 Aligned_cols=460 Identities=25% Similarity=0.363 Sum_probs=368.1
Q ss_pred hccccccccccccc--cccCCccccccccccCccC-CCCCCCCCcccCCCCCCcCCCCCCccccchhhhccccccccccC
Q 004202 231 DERNSLKNEVRASS--RISDSSSVVMAKDRLGTID-EGNCSNHGTVDDSISSSVDGTESSSHTGNLTSNMKNMSSTAKSG 307 (768)
Q Consensus 231 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 307 (768)
+|-.|+|++...+. -..++...+..++|.+... .|+.-+-..|++ +++-..-.+.++.++++-|..-.+..
T Consensus 12 geg~nVEfK~~ls~~hl~~~R~~~La~Qmk~Rl~~GdGeA~YviGVsd------~Ge~~Gl~~~~l~esievL~~la~ev 85 (527)
T COG5258 12 GEGENVEFKLTLSPIHLKEDRLDRLAGQMKYRLEEGDGEAVYVIGVSD------DGEPLGLSDEKLVESIEVLRELAREV 85 (527)
T ss_pred CCCcceeeeeecCccccChhHHHHHHHHHHHHHHcCCceEEEEEEecC------CCcccCCCHHHHHHHHHHHHHHHHHh
Confidence 45558999998887 5677778888888876443 445555556665 44444555666888888886666553
Q ss_pred CCCCccccccccccccCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCcc
Q 004202 308 NSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSF 387 (768)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~ 387 (768)
......++.+...-.|-.+.. .++..+....++.|+++||+|||||||++.|+ ++..+ +|+|-
T Consensus 86 gA~i~~v~~~eg~~g~Vaev~-vrr~~~~~~~hv~Vg~aGhVdhGKSTlvG~Lv--tG~~D-------------DG~G~- 148 (527)
T COG5258 86 GASIYIVRVHEGTDGYVAEVL-VRRKTEEAPEHVLVGVAGHVDHGKSTLVGVLV--TGRLD-------------DGDGA- 148 (527)
T ss_pred CCEEEEEEEEeccCcEEEEEE-EEecccCCCceEEEEEeccccCCcceEEEEEE--ecCCC-------------CCCcc-
Confidence 322233333222222222222 23445556788999999999999999999998 23322 23332
Q ss_pred chhhccccchhhhccCeEEEEEEEEEeeC-----------------------CeEEEEEeCCCccchHHHHHHhcc--cC
Q 004202 388 AYAWALDESAEERERGITMTVAVAYFDSK-----------------------NYHVVVLDSPGHKDFVPNMISGAT--QS 442 (768)
Q Consensus 388 ~~a~~~d~~~~Ere~GiTid~~~~~~~~~-----------------------~~~i~lIDTPGh~~f~~~~i~g~~--~a 442 (768)
...++|.+++|-++|.|.+++++.+.++ ++.+.|+||.||+.|+.++++|+- ..
T Consensus 149 -tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~ 227 (527)
T COG5258 149 -TRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKV 227 (527)
T ss_pred -hhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhcccc
Confidence 3456788999999999999888766432 245889999999999999999985 49
Q ss_pred CEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCC------
Q 004202 443 DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK------ 516 (768)
Q Consensus 443 D~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~------ 516 (768)
|+.+|||.|++| ++.+|+||+.++.++++| +|||+||+|+++ .++++.+.+++..+|+..+--
T Consensus 228 dYglLvVaAddG--------~~~~tkEHLgi~~a~~lP-viVvvTK~D~~~--ddr~~~v~~ei~~~Lk~v~Rip~~vk~ 296 (527)
T COG5258 228 DYGLLVVAADDG--------VTKMTKEHLGIALAMELP-VIVVVTKIDMVP--DDRFQGVVEEISALLKRVGRIPLIVKD 296 (527)
T ss_pred ceEEEEEEccCC--------cchhhhHhhhhhhhhcCC-EEEEEEecccCc--HHHHHHHHHHHHHHHHHhcccceeeec
Confidence 999999999998 477999999999999999 899999999986 789999999999998764321
Q ss_pred --------------CCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCC-CCCCCceeeeEeEEeeC
Q 004202 517 --------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR-EFSKPLLMPICDVLKSQ 580 (768)
Q Consensus 517 --------------~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~-~~~~plr~~I~dv~~~~ 580 (768)
..-+|+|.+|+.+|+|++ ||+.+ ..+|...+ ....||+|.|+++|.+.
T Consensus 297 ~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld----------------lL~e~f~~Lp~rr~~~d~g~flmYId~iYsVt 360 (527)
T COG5258 297 TDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD----------------LLDEFFLLLPKRRRWDDEGPFLMYIDKIYSVT 360 (527)
T ss_pred cchhHHhhhhhhcCCceEEEEEEecccCccHH----------------HHHHHHHhCCcccccCCCCCeEEEEEeeEEEe
Confidence 113688999999999984 45444 55554433 45689999999999999
Q ss_pred -CCcEEEEEEEecCcccCCCEEEEccCC----eeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCCCC
Q 004202 581 -HGQVSACGKLEAGALRSGLKVLVLPSG----EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFP 655 (768)
Q Consensus 581 -~G~V~v~G~V~sG~L~~Gd~v~i~P~~----~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~p 655 (768)
+|+| +.|.|.+|.|+.||+|+++|.. ..++||||++|+..+++|.||.+++++|+|+..+.+++||||+.+ .+
T Consensus 361 GVGtV-vsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~ 438 (527)
T COG5258 361 GVGTV-VSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG-AD 438 (527)
T ss_pred eeEEE-EeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC-CC
Confidence 9999 8999999999999999999975 479999999999999999999999999999999999999999987 67
Q ss_pred cceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeC-ceEEe
Q 004202 656 VAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQ-EPVCV 734 (768)
Q Consensus 656 ~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~-~pI~~ 734 (768)
|.+.+.|+|++++|.||+.|+.||.+++|.-++++++++.+| | ..+|++||...++++|. +|-.+
T Consensus 439 pkaVref~AeV~vl~HPT~I~aGye~v~H~etI~e~~~f~~i----d----------~~~L~~GD~g~vr~~fkyrP~~v 504 (527)
T COG5258 439 PKAVREFDAEVLVLRHPTTIRAGYEPVFHYETIREAVYFEEI----D----------KGFLMPGDRGVVRMRFKYRPHHV 504 (527)
T ss_pred chhhheecceEEEEeCCcEEecCceeeeEeeEeeheeEEEEc----c----------cccccCCCcceEEEEEEeCchhh
Confidence 888999999999999999999999999999999999999877 3 15899999999999985 99998
Q ss_pred ecccccCCcceEEEEeCCcEEEEEEEEeec
Q 004202 735 EEFSNCRALGRAFLRSSGRTIAVGIVTRII 764 (768)
Q Consensus 735 e~~~~~~~lGRfILR~~g~TvgvG~V~~v~ 764 (768)
++.. +||+| +|++.|+|.|+++.
T Consensus 505 ~eGQ------~fvFR-eGrskgvG~v~~~~ 527 (527)
T COG5258 505 EEGQ------KFVFR-EGRSKGVGRVIRVD 527 (527)
T ss_pred ccCc------EEEEe-cCCCccceEEeccC
Confidence 8843 67776 99999999999863
No 23
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1.2e-50 Score=472.69 Aligned_cols=338 Identities=24% Similarity=0.368 Sum_probs=297.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-CCeE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYH 419 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-~~~~ 419 (768)
+.|+++||+|+|||||+++|++. .+|...+|+++|+|++.++..+.. ++..
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~----------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~ 52 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGV----------------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRV 52 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC----------------------------CCccchhcccCCceEEeeeEEEecCCCcE
Confidence 36899999999999999999831 246778899999999999988866 4678
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhH
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 499 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~ 499 (768)
+.|||||||++|+++|+.++..+|++|||||+++|. ++|+++|+.++..++++++|||+||+|+++ ++++
T Consensus 53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~--------~~qT~ehl~il~~lgi~~iIVVlNKiDlv~--~~~~ 122 (614)
T PRK10512 53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGV--------MAQTREHLAILQLTGNPMLTVALTKADRVD--EARI 122 (614)
T ss_pred EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCeEEEEEECCccCC--HHHH
Confidence 999999999999999999999999999999999884 689999999999999998889999999985 5778
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeEeEEee
Q 004202 500 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLKS 579 (768)
Q Consensus 500 ~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~dv~~~ 579 (768)
+.+.+++..+++..++. ..++||+||++|+|+.+ |+++|..++.+.+..+.||+|+|+++|.+
T Consensus 123 ~~v~~ei~~~l~~~~~~--~~~ii~VSA~tG~gI~~---------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~v 185 (614)
T PRK10512 123 AEVRRQVKAVLREYGFA--EAKLFVTAATEGRGIDA---------------LREHLLQLPEREHAAQHRFRLAIDRAFTV 185 (614)
T ss_pred HHHHHHHHHHHHhcCCC--CCcEEEEeCCCCCCCHH---------------HHHHHHHhhccccCcCCCceEEEEEEecc
Confidence 88888999888877764 46799999999999965 89999887777666789999999999999
Q ss_pred C-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecc-cccccccCCcccccCCCCcc
Q 004202 580 Q-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQG-IDVSRVMSGGVLCHPDFPVA 657 (768)
Q Consensus 580 ~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~g-i~~~~i~rG~VL~~~~~p~~ 657 (768)
+ .|+| |+|+|.+|+|++||+|.+.|.+..++|++||+++.+++.|.|||+|+|+|+| ++..++++||||++++. +.
T Consensus 186 ~G~GtV-vtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~-~~ 263 (614)
T PRK10512 186 KGAGLV-VTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAP-PE 263 (614)
T ss_pred CCCeEE-EEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCC-Cc
Confidence 8 9999 8999999999999999999999999999999999999999999999999997 89999999999998753 34
Q ss_pred eeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecc
Q 004202 658 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEF 737 (768)
Q Consensus 658 ~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~ 737 (768)
.+..+ +.++....||..|+++.||+|+.++.|+|..| +.+.++|.|++|+++...
T Consensus 264 ~~~~~---~~~l~~~~~l~~~~~~~~~~gt~~~~~~i~~l----------------------~~~~~~l~l~~p~~~~~g 318 (614)
T PRK10512 264 PFTRV---IVELQTHTPLTQWQPLHIHHAASHVTGRVSLL----------------------EDNLAELVLDTPLWLADN 318 (614)
T ss_pred cceeE---EEEEcCCccCCCCCEEEEEEcccEEEEEEEEc----------------------CCeEEEEEECCcccccCC
Confidence 44444 34455568999999999999999999999755 136799999999999876
Q ss_pred cccCCcceEEEEe--CCcEEEEEEEEeeccc
Q 004202 738 SNCRALGRAFLRS--SGRTIAVGIVTRIIED 766 (768)
Q Consensus 738 ~~~~~lGRfILR~--~g~TvgvG~V~~v~~~ 766 (768)
+ |||||+ ..+|+|+|+|+...+.
T Consensus 319 d------r~ilr~~s~~~tigGg~Vld~~~~ 343 (614)
T PRK10512 319 D------RLVLRDISARNTLAGARVVMLNPP 343 (614)
T ss_pred C------EEEEEeCCCCEEEEEEEEcccCCc
Confidence 5 999998 5589999999987654
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=1.6e-49 Score=445.14 Aligned_cols=340 Identities=29% Similarity=0.446 Sum_probs=287.0
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
++.++|+++||+|+|||||+++|++ ..+|...+|+++|+|++.++..+.+.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~----------------------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~ 58 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTG----------------------------VWTDRHSEELKRGITIRLGYADATIRK 58 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhC----------------------------eecccCHhHHhcCcEEEeccccccccc
Confidence 4679999999999999999999962 13678889999999999886543321
Q ss_pred -------------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH
Q 004202 417 -------------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 471 (768)
Q Consensus 417 -------------------------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l 471 (768)
.+.++|||||||++|..+++.++..+|++|+|||++++. ...++.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~-------~~~~t~~~l 131 (411)
T PRK04000 59 CPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC-------PQPQTKEHL 131 (411)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------CChhHHHHH
Confidence 268999999999999999999999999999999999863 136889999
Q ss_pred HHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcch
Q 004202 472 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCL 551 (768)
Q Consensus 472 ~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~L 551 (768)
.++..+++++++||+||+|+++. +......+++..+++... ...++++++||++|+|+.+ |
T Consensus 132 ~~l~~~~i~~iiVVlNK~Dl~~~--~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gI~~---------------L 192 (411)
T PRK04000 132 MALDIIGIKNIVIVQNKIDLVSK--ERALENYEQIKEFVKGTV--AENAPIIPVSALHKVNIDA---------------L 192 (411)
T ss_pred HHHHHcCCCcEEEEEEeeccccc--hhHHHHHHHHHHHhcccc--CCCCeEEEEECCCCcCHHH---------------H
Confidence 99989998778999999999863 333333445555554321 1347899999999999965 8
Q ss_pred hhhhhc-cCCCCCCCCCCceeeeEeEEeeC-C--------CcEEEEEEEecCcccCCCEEEEccCCe------------e
Q 004202 552 LDAIDS-LRPPPREFSKPLLMPICDVLKSQ-H--------GQVSACGKLEAGALRSGLKVLVLPSGE------------V 609 (768)
Q Consensus 552 Le~L~~-l~~~~~~~~~plr~~I~dv~~~~-~--------G~V~v~G~V~sG~L~~Gd~v~i~P~~~------------~ 609 (768)
++.|.. ++.+.+..++|++|+|+++|.++ . |+| ++|+|.+|.|++||+|.++|.+. .
T Consensus 193 ~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~V-v~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~ 271 (411)
T PRK04000 193 IEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGV-IGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPIT 271 (411)
T ss_pred HHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceE-EEEEEEeCEEecCCEEEEcCCcceecccccccccce
Confidence 888865 56666777899999999999765 3 457 89999999999999999999863 5
Q ss_pred eEEEeeeecccccceeccCCceEEEec---ccccccccCCcccccCCCCcceeeEEEEEEEeeCC---------CCCccC
Q 004202 610 GTVHSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDF---------APPILI 677 (768)
Q Consensus 610 ~~VksI~~~~~~v~~A~aGd~V~l~L~---gi~~~~i~rG~VL~~~~~p~~~~~~F~a~i~vl~~---------~~pI~~ 677 (768)
++|++|++++.++++|.|||+|+|+|+ +++..++++|+||++++.+++.++.|+|++.||.+ +++|.+
T Consensus 272 ~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~ 351 (411)
T PRK04000 272 TKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKT 351 (411)
T ss_pred EEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCC
Confidence 799999999999999999999999996 67888899999999998888888999999999987 689999
Q ss_pred CCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcceEEE--EeCC--c
Q 004202 678 GSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALGRAFL--RSSG--R 753 (768)
Q Consensus 678 G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~~~~~~lGRfIL--R~~g--~ 753 (768)
|+++.+|+|+.+++|+|..|. ++ .++|+|++|+|+.+.+ ||+| |.+| |
T Consensus 352 g~~~~l~~~t~~~~~~i~~i~--------------------~~--~~~~~l~~p~~~~~g~------r~~~~~~~~~~~~ 403 (411)
T PRK04000 352 GEPLMLNVGTATTVGVVTSAR--------------------KD--EAEVKLKRPVCAEEGD------RVAISRRVGGRWR 403 (411)
T ss_pred CCEEEEEEeccEEEEEEEEcC--------------------Cc--EEEEEECCcEecCCCC------EEEEEEecCCcEE
Confidence 999999999999999998762 11 5778899999999876 9999 6677 8
Q ss_pred EEEEEEE
Q 004202 754 TIAVGIV 760 (768)
Q Consensus 754 TvgvG~V 760 (768)
++|+|.|
T Consensus 404 ~~~~~~~ 410 (411)
T PRK04000 404 LIGYGII 410 (411)
T ss_pred EEEEEEe
Confidence 9999987
No 25
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=2.2e-49 Score=444.04 Aligned_cols=340 Identities=30% Similarity=0.463 Sum_probs=285.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-- 415 (768)
++.++|+++||+|||||||+++|++. .+|.+.+|+++|+|+++++..+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~----------------------------~~d~~~~e~~rg~Ti~~~~~~~~~~~ 53 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV----------------------------WTDTHSEELKRGISIRLGYADAEIYK 53 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe----------------------------ecccCHhHHHcCceeEeccccccccc
Confidence 46789999999999999999999731 257788999999999988765431
Q ss_pred ------------------------CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH
Q 004202 416 ------------------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 471 (768)
Q Consensus 416 ------------------------~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l 471 (768)
.+..++|||||||++|.++|+.++..+|++||||||+++. ...|+++|+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l 126 (406)
T TIGR03680 54 CPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHL 126 (406)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHH
Confidence 1468999999999999999999999999999999999873 146999999
Q ss_pred HHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcch
Q 004202 472 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCL 551 (768)
Q Consensus 472 ~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~L 551 (768)
.++..++++++|||+||+|+++ .+...+..+++..+++... ...++++|+||++|+|+.+ |
T Consensus 127 ~~l~~~gi~~iIVvvNK~Dl~~--~~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gi~~---------------L 187 (406)
T TIGR03680 127 MALEIIGIKNIVIVQNKIDLVS--KEKALENYEEIKEFVKGTV--AENAPIIPVSALHNANIDA---------------L 187 (406)
T ss_pred HHHHHcCCCeEEEEEEccccCC--HHHHHHHHHHHHhhhhhcc--cCCCeEEEEECCCCCChHH---------------H
Confidence 9999999988999999999986 2333333445555554432 1357899999999999965 8
Q ss_pred hhhhhc-cCCCCCCCCCCceeeeEeEEeeC-C--------CcEEEEEEEecCcccCCCEEEEccCCe------------e
Q 004202 552 LDAIDS-LRPPPREFSKPLLMPICDVLKSQ-H--------GQVSACGKLEAGALRSGLKVLVLPSGE------------V 609 (768)
Q Consensus 552 Le~L~~-l~~~~~~~~~plr~~I~dv~~~~-~--------G~V~v~G~V~sG~L~~Gd~v~i~P~~~------------~ 609 (768)
+++|.. ++.+.++.+.|++|+|+++|.+. . |+| ++|+|.+|+|++||+|.++|++. .
T Consensus 188 ~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~V-v~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~ 266 (406)
T TIGR03680 188 LEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGV-IGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIY 266 (406)
T ss_pred HHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeE-EEEEEEeCEEeCCCEEEEccCccccccccccccccc
Confidence 999876 57666777899999999999765 3 557 89999999999999999999852 4
Q ss_pred eEEEeeeecccccceeccCCceEEEec---ccccccccCCcccccCCCCcceeeEEEEEEEeeCC---------CCCccC
Q 004202 610 GTVHSIERDSQSCSVARAGDNIAVSLQ---GIDVSRVMSGGVLCHPDFPVAIATHLELKVLVLDF---------APPILI 677 (768)
Q Consensus 610 ~~VksI~~~~~~v~~A~aGd~V~l~L~---gi~~~~i~rG~VL~~~~~p~~~~~~F~a~i~vl~~---------~~pI~~ 677 (768)
++|++|++++.++++|.|||+|+|+|+ +++..++++|+||++++.+++.++.|+|++.||.+ +.||+.
T Consensus 267 ~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~ 346 (406)
T TIGR03680 267 TEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKT 346 (406)
T ss_pred eEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCC
Confidence 799999999999999999999999985 68888999999999998877788999999999975 489999
Q ss_pred CCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcceEEE--EeCC--c
Q 004202 678 GSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALGRAFL--RSSG--R 753 (768)
Q Consensus 678 G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~~~~~~lGRfIL--R~~g--~ 753 (768)
|+++.+|+|+.+++|+|..+.. ..++++|.+|+|+.+.+ ||+| |.++ +
T Consensus 347 g~~~~l~~gt~~~~~~v~~~~~----------------------~~~~l~l~~p~~~~~g~------r~~~~~~~~~~~~ 398 (406)
T TIGR03680 347 GEVLMLNVGTATTVGVVTSARK----------------------DEIEVKLKRPVCAEEGD------RVAISRRVGGRWR 398 (406)
T ss_pred CCEEEEEEccceEEEEEEEcCC----------------------cEEEEEECCcEEcCCCC------EEEEEEecCCceE
Confidence 9999999999999999986621 13778899999999876 9999 3444 7
Q ss_pred EEEEEEE
Q 004202 754 TIAVGIV 760 (768)
Q Consensus 754 TvgvG~V 760 (768)
++|.|.|
T Consensus 399 ~~g~g~~ 405 (406)
T TIGR03680 399 LIGYGII 405 (406)
T ss_pred EEEEEEe
Confidence 9999987
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=2.3e-47 Score=443.62 Aligned_cols=336 Identities=28% Similarity=0.415 Sum_probs=283.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++||+|||||||+++|++. .++...+|+++|+|++.++..+.+++..+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~----------------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI----------------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc----------------------------cCcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 47999999999999999999831 13556778899999999999999988999
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHH
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 500 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~ 500 (768)
.|||||||++|.++|+.++.++|++|+|||+++|. ++|+.+|+.++..+++|++|||+||||+++ .++++
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~--------~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~--~~~~~ 122 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGV--------MTQTGEHLAVLDLLGIPHTIVVITKADRVN--EEEIK 122 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCeEEEEEECCCCCC--HHHHH
Confidence 99999999999999999999999999999999873 579999999999999998999999999985 56677
Q ss_pred HHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeEeEEeeC
Q 004202 501 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPICDVLKSQ 580 (768)
Q Consensus 501 ~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~dv~~~~ 580 (768)
.+.+++..+++..++. ..+++||+||++|+|+.+... .|.+.+..+... ..+.||+|+|+++|.++
T Consensus 123 ~~~~ei~~~l~~~~~~-~~~~ii~vSA~tG~GI~eL~~-----------~L~~l~~~~~~~--~~~~p~r~~Id~~f~v~ 188 (581)
T TIGR00475 123 RTEMFMKQILNSYIFL-KNAKIFKTSAKTGQGIGELKK-----------ELKNLLESLDIK--RIQKPLRMAIDRAFKVK 188 (581)
T ss_pred HHHHHHHHHHHHhCCC-CCCcEEEEeCCCCCCchhHHH-----------HHHHHHHhCCCc--CcCCCcEEEEEEEEecC
Confidence 7788888888877764 257899999999999976221 122223333322 25789999999999999
Q ss_pred -CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCCCCccee
Q 004202 581 -HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVAIA 659 (768)
Q Consensus 581 -~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~p~~~~ 659 (768)
.|+| |+|+|.+|+|++||+|.++|.+..++|++||.++++++.|.|||+|+|+|+|++..+|++|.+++.+..+.
T Consensus 189 G~GtV-v~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~~--- 264 (581)
T TIGR00475 189 GAGTV-VTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDPK--- 264 (581)
T ss_pred CcEEE-EEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCCC---
Confidence 9999 89999999999999999999999999999999999999999999999999999999999998887764332
Q ss_pred eEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecccc
Q 004202 660 THLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSN 739 (768)
Q Consensus 660 ~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~~~ 739 (768)
..+.+.+.. ..+|..|+++.+|+|+.++.|+|..+ |. ..+++.|.+|+++...+
T Consensus 265 ~~~~~~~~~---~~~l~~~~~~~~~~gt~~~~~~i~~l----~~------------------~~~~l~l~~P~~~~~gd- 318 (581)
T TIGR00475 265 LRVVVKFIA---EVPLLELQPYHIAHGMSVTTGKISLL----DK------------------GIALLTLDAPLILAKGD- 318 (581)
T ss_pred ceEEEEEEc---CCccCCCCeEEEEEeceEEEEEEEEc----cC------------------cEEEEEECCceecCCCC-
Confidence 122333222 36899999999999999999998754 21 16788899999998876
Q ss_pred cCCcceEEEEeC-CcEEEEEEEEee
Q 004202 740 CRALGRAFLRSS-GRTIAVGIVTRI 763 (768)
Q Consensus 740 ~~~lGRfILR~~-g~TvgvG~V~~v 763 (768)
|||||++ .+|+|+|.|+..
T Consensus 319 -----~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 319 -----KLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred -----EEEEEeCCCEEEeeeEEecC
Confidence 9999984 489999999876
No 27
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=2.3e-49 Score=415.67 Aligned_cols=376 Identities=27% Similarity=0.383 Sum_probs=311.0
Q ss_pred cccccCC-CCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccC
Q 004202 325 PEKWMLP-DKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG 403 (768)
Q Consensus 325 ~e~~~~~-~~~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~G 403 (768)
-+.|+.. .......-..+|+++|.+|+|||||++.|++. .+ .+|+|..+-. +.++++|.+.|
T Consensus 117 ~~~~liRk~~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHg--eL-------------DnGRG~ARqk--LFRHKHEiESG 179 (641)
T KOG0463|consen 117 TEVWLIRKPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHG--EL-------------DNGRGAARQK--LFRHKHEIESG 179 (641)
T ss_pred eeEEEEeCCCCCccceeEEEEEEecccCCcceeEeeeeec--cc-------------ccCccHHHHH--HhhhhhhcccC
Confidence 3455443 33344556789999999999999999999963 11 2344444333 34567777777
Q ss_pred eEEEEEEEE--Eee-----------------------CCeEEEEEeCCCccchHHHHHHhccc--CCEEEEEEecCCCcc
Q 004202 404 ITMTVAVAY--FDS-----------------------KNYHVVVLDSPGHKDFVPNMISGATQ--SDAAILVIDASVGSF 456 (768)
Q Consensus 404 iTid~~~~~--~~~-----------------------~~~~i~lIDTPGh~~f~~~~i~g~~~--aD~aILVVDA~~g~~ 456 (768)
.|..++--. |+. ....|+|||.+||++|+++++.++.+ +|+.+|+|-|+.|+
T Consensus 180 RTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI- 258 (641)
T KOG0463|consen 180 RTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI- 258 (641)
T ss_pred ccccccccceeeccccccccCCCCCCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-
Confidence 777654322 211 12468999999999999999999876 99999999999985
Q ss_pred ccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCC-------------------
Q 004202 457 EVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD------------------- 517 (768)
Q Consensus 457 e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~------------------- 517 (768)
.++|+||+.++.++.+| ++||++|+|++. .+.+++..+.+..++++.|+..
T Consensus 259 -------iGmTKEHLgLALaL~VP-VfvVVTKIDMCP--ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~ 328 (641)
T KOG0463|consen 259 -------IGMTKEHLGLALALHVP-VFVVVTKIDMCP--ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFP 328 (641)
T ss_pred -------eeccHHhhhhhhhhcCc-EEEEEEeeccCc--HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCc
Confidence 57999999999999999 899999999996 5778888888999998876541
Q ss_pred --CCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCC--CCCCCceeeeEeEEeeC-CCcEEEEEEEec
Q 004202 518 --ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPR--EFSKPLLMPICDVLKSQ-HGQVSACGKLEA 592 (768)
Q Consensus 518 --~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~--~~~~plr~~I~dv~~~~-~G~V~v~G~V~s 592 (768)
.-.|+|.+|..+|+|+. ||..+.++.++.+ ..+.|..|.|+++|.++ +|+| +.|++.+
T Consensus 329 Ser~CPIFQvSNVtG~NL~----------------LLkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTv-vSGT~L~ 391 (641)
T KOG0463|consen 329 SERVCPIFQVSNVTGTNLP----------------LLKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTV-VSGTLLS 391 (641)
T ss_pred cccccceEEeccccCCChH----------------HHHHHHhhcCcccccccCCCcceeecceEecCCcceE-eecceee
Confidence 23477888999999873 7777666655543 34679999999999999 9999 8999999
Q ss_pred CcccCCCEEEEccCC----eeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCCCCcceeeEEEEEEEe
Q 004202 593 GALRSGLKVLVLPSG----EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVAIATHLELKVLV 668 (768)
Q Consensus 593 G~L~~Gd~v~i~P~~----~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~p~~~~~~F~a~i~v 668 (768)
|+|+.+|.++++|.. .+..||||++.+-++..+++||.+.++|+.|...++++|||+++|+..|.++|.|+|+|++
T Consensus 392 GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILV 471 (641)
T KOG0463|consen 392 GTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILV 471 (641)
T ss_pred eeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEE
Confidence 999999999999975 3789999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCc-eEEeecccccCCcceEE
Q 004202 669 LDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQE-PVCVEEFSNCRALGRAF 747 (768)
Q Consensus 669 l~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~-pI~~e~~~~~~~lGRfI 747 (768)
|+||+.|.+.||.++|||+++|+|.|..+. .++|+.||.+.|+|+|.+ |.++.+. .|.+
T Consensus 472 LHHPTTIsprYQAMvHcGSiRQTAtivsM~--------------kdcLRTGDka~V~FrFIkqPEYir~g------qrlV 531 (641)
T KOG0463|consen 472 LHHPTTISPRYQAMVHCGSIRQTATIVSMG--------------KDCLRTGDKAKVQFRFIKQPEYIRPG------QRLV 531 (641)
T ss_pred EecCCccCcchhheeeeccccceeeeeecC--------------hhhhhcCCcceEEEEEecCcceecCC------ceEE
Confidence 999999999999999999999999998662 269999999999999855 5555442 3666
Q ss_pred EEeCCcEEEEEEEEeeccc
Q 004202 748 LRSSGRTIAVGIVTRIIED 766 (768)
Q Consensus 748 LR~~g~TvgvG~V~~v~~~ 766 (768)
+| +|||.|+|.|+++++.
T Consensus 532 FR-EGRTKAVGti~~~lp~ 549 (641)
T KOG0463|consen 532 FR-EGRTKAVGTISSVLPQ 549 (641)
T ss_pred ee-cccceeeeeecccccc
Confidence 66 9999999999998865
No 28
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-48 Score=410.11 Aligned_cols=467 Identities=24% Similarity=0.331 Sum_probs=366.2
Q ss_pred hccccccccccccccccCCccccccccccCccC-CCCCCCCCcccCCCCCCcCCCCCCccccchhhhccccccccccCCC
Q 004202 231 DERNSLKNEVRASSRISDSSSVVMAKDRLGTID-EGNCSNHGTVDDSISSSVDGTESSSHTGNLTSNMKNMSSTAKSGNS 309 (768)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~ 309 (768)
-|.||+||+.+..+++-.+-.|+..++||+-.+ .|+..+...|++ .+--....++++.++++.|.-.....-.
T Consensus 58 ~~lgnieyk~klvnpt~~r~~hlitqMKWRLrEG~GEAiYeIGVeD------~G~l~GL~deemnaSL~TL~~MA~~lGA 131 (591)
T KOG1143|consen 58 TELGNIEYKAKLVNPTTSRIQHLITQMKWRLREGQGEAIYEIGVED------GGILSGLTDEEMNASLRTLRTMAQALGA 131 (591)
T ss_pred cccCceeeeeeecCccHHHHHHHHHHHHhhhhcCCCcEEEEeeecc------CceeeccCHHHHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999999999554 677777778877 3333344556688888877655443111
Q ss_pred CCccc-ccccccc---ccC-cccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCC
Q 004202 310 TNVSA-RKTNSHT---QYK-PEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK 384 (768)
Q Consensus 310 ~~~~~-~~~~~~~---~~~-~e~~~~~~~~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk 384 (768)
.+.-. .+.+..- ... .|.....-...++.-.++||++|..|+|||||++.|+.. .-.+|+
T Consensus 132 s~~vLrek~v~~~~~~~R~v~EVLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQg---------------eLDnG~ 196 (591)
T KOG1143|consen 132 SMVVLREKDVTVKGSSRRTVVEVLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQG---------------ELDNGN 196 (591)
T ss_pred ceEEEEeeeeeccCCCcchhhhhhhhhCCCcccceEEEEEEecCcccCcceeeeeeecc---------------cccCCC
Confidence 10100 1111000 000 011111112234455789999999999999999999942 223455
Q ss_pred CccchhhccccchhhhccCeEEEEEEEEEee---------------------CCeEEEEEeCCCccchHHHHHHhccc--
Q 004202 385 GSFAYAWALDESAEERERGITMTVAVAYFDS---------------------KNYHVVVLDSPGHKDFVPNMISGATQ-- 441 (768)
Q Consensus 385 ~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~---------------------~~~~i~lIDTPGh~~f~~~~i~g~~~-- 441 (768)
|..+ ..+.++.+|...|.|..+....+.. ...-++|||.+||.+|.++++.++..
T Consensus 197 GrAR--ln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~ 274 (591)
T KOG1143|consen 197 GRAR--LNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYT 274 (591)
T ss_pred Ceee--eehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCC
Confidence 5443 3455778888888887765443221 23569999999999999999999986
Q ss_pred CCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCC-----
Q 004202 442 SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK----- 516 (768)
Q Consensus 442 aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~----- 516 (768)
+|+++|||.|..|+ ...|+||+.++.++++| ++|+++|||+++ ..-++.+.+++..+++..|+.
T Consensus 275 Ph~A~LvVsA~~Gi--------~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~~--~~~~~~tv~~l~nll~~~Gc~kvp~~ 343 (591)
T KOG1143|consen 275 PHFACLVVSADRGI--------TWTTREHLGLIAALNIP-FFVLVTKMDLVD--RQGLKKTVKDLSNLLAKAGCTKVPKR 343 (591)
T ss_pred CceEEEEEEcCCCC--------ccccHHHHHHHHHhCCC-eEEEEEeecccc--chhHHHHHHHHHHHHhhcCccccceE
Confidence 99999999999985 56899999999999999 899999999996 567788889999999888765
Q ss_pred ----------------CCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCC-------CCCCceeee
Q 004202 517 ----------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPRE-------FSKPLLMPI 573 (768)
Q Consensus 517 ----------------~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~-------~~~plr~~I 573 (768)
+.-+|++.+|+.+|+|+. |+..+.++.+|... ...|..|.|
T Consensus 344 Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~----------------ll~~fLn~Lsp~~~~~e~~~L~q~~~eFqv 407 (591)
T KOG1143|consen 344 VTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR----------------LLRTFLNCLSPAGTAEERIQLVQLPAEFQV 407 (591)
T ss_pred eechHHHHHHHHHhccCCceeEEEEeecCccchh----------------HHHHHHhhcCCcCChHHHHHHhcCcceeeH
Confidence 234688999999999984 55554443333221 246888999
Q ss_pred EeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCC----eeeEEEeeeecccccceeccCCceEEEecccccccccCCcc
Q 004202 574 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG----EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGV 648 (768)
Q Consensus 574 ~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~----~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~V 648 (768)
+++|+++ +|+| |.|.+.+|.++.|+.++++|.. .+++|-+|++++.++..++|||.+.|+|...|...+++|||
T Consensus 408 dEiy~Vp~VG~V-VGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMV 486 (591)
T KOG1143|consen 408 DEIYNVPHVGQV-VGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMV 486 (591)
T ss_pred hHeecCCccccc-ccceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcceE
Confidence 9999999 9999 8999999999999999999975 48999999999999999999999999999888888999999
Q ss_pred cccCCCCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEe
Q 004202 649 LCHPDFPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVAL 728 (768)
Q Consensus 649 L~~~~~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l 728 (768)
|..++..|+.+..|+|++++|.|.+.|..|+|..+|+|+++++|-|.+|.. .++|++|++|.|.|.|
T Consensus 487 l~~~~~nP~~c~~F~A~~~lLfHaT~i~~GFQ~TVhiGsvrqTAvi~~I~~-------------~d~lrtg~~AvV~f~F 553 (591)
T KOG1143|consen 487 LAEIDHNPPVCYEFTANLLLLFHATYICEGFQATVHIGSVRQTAVITHIDD-------------ADCLRTGKWAVVKFCF 553 (591)
T ss_pred EeecCCCCceEEEEeeeehhhhhhHhheecceEEEEEcceeeeeeeeeecc-------------cccccCCceEEEEEEe
Confidence 999998899999999999999999999999999999999999999998842 2689999999999996
Q ss_pred -CceEEeecccccCCcceEEEEeCCcEEEEEEEEeecccCC
Q 004202 729 -QEPVCVEEFSNCRALGRAFLRSSGRTIAVGIVTRIIEDQQ 768 (768)
Q Consensus 729 -~~pI~~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~~~~ 768 (768)
.+|.++.+ |.-||+++|.|.|+|.|++|.+-+|
T Consensus 554 ~~hPEyir~-------G~~ilfReG~tKGiG~Vt~Vfp~t~ 587 (591)
T KOG1143|consen 554 AYHPEYIRE-------GSPILFREGKTKGIGEVTKVFPCTQ 587 (591)
T ss_pred cCCchhccC-------CCeeeeecccccccceEEEEEeccc
Confidence 56766665 3455555999999999999987554
No 29
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-46 Score=401.90 Aligned_cols=296 Identities=26% Similarity=0.388 Sum_probs=266.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
.|+..||+++|||||+.+|++ ..+|..++|.++|+|+|+++.++..+++.+.
T Consensus 2 ii~t~GhidHgkT~L~~altg----------------------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTG----------------------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhhcc----------------------------cccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 589999999999999999984 2467889999999999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHH
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 501 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~ 501 (768)
|||+|||++|+++|+.++...|++|||||+++| ++.||.||+.++..+|+++.|||+||+|+++ +++.+.
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deG--------l~~qtgEhL~iLdllgi~~giivltk~D~~d--~~r~e~ 123 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEG--------LMAQTGEHLLILDLLGIKNGIIVLTKADRVD--EARIEQ 123 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC--------cchhhHHHHHHHHhcCCCceEEEEecccccc--HHHHHH
Confidence 999999999999999999999999999999998 5789999999999999999999999999996 556665
Q ss_pred HHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccC-CCCCCCCCCceeeeEeEEeeC
Q 004202 502 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR-PPPREFSKPLLMPICDVLKSQ 580 (768)
Q Consensus 502 i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~-~~~~~~~~plr~~I~dv~~~~ 580 (768)
..+++...+. + .+.++|++|+.+|+||.+ |-+.|..++ .+.++.+.||+++|+++|.++
T Consensus 124 ~i~~Il~~l~---l--~~~~i~~~s~~~g~GI~~---------------Lk~~l~~L~~~~e~d~~~~fri~IDraFtVK 183 (447)
T COG3276 124 KIKQILADLS---L--ANAKIFKTSAKTGRGIEE---------------LKNELIDLLEEIERDEQKPFRIAIDRAFTVK 183 (447)
T ss_pred HHHHHHhhcc---c--ccccccccccccCCCHHH---------------HHHHHHHhhhhhhhccCCceEEEEeeEEEec
Confidence 6555555543 4 345679999999999976 667776665 456778999999999999999
Q ss_pred -CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCCCCccee
Q 004202 581 -HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPDFPVAIA 659 (768)
Q Consensus 581 -~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~~p~~~~ 659 (768)
+|+| |+|++.+|.+++||++++.|.++.++|||||.+++++++|.||++|+++|+|++.++|.||++|++++.. +++
T Consensus 184 GvGTV-VtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~~-~v~ 261 (447)
T COG3276 184 GVGTV-VTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPL-EVT 261 (447)
T ss_pred cccEE-EEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCCC-Ccc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999998754 667
Q ss_pred eEEEEEEEeeC-CCCCccCCCeeEEEEeeeeEEEEEEEE
Q 004202 660 THLELKVLVLD-FAPPILIGSQLECHIHHAKEAARIVKI 697 (768)
Q Consensus 660 ~~F~a~i~vl~-~~~pI~~G~~~~lhig~~~~~a~I~~I 697 (768)
.+|.+.+.|.. ...++.+++.+++|+|...++|+|..+
T Consensus 262 ~~~~~~~~i~~~~~~~l~~~~~~hi~~g~~~~~~~i~~l 300 (447)
T COG3276 262 TRLIVELEIDPLFKKTLKQGQPVHIHVGLRSVTGRIVPL 300 (447)
T ss_pred eEEEEEEEeccccccccCCCceEEEEEeccccceEeeec
Confidence 88999888874 568999999999999999999999866
No 30
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-39 Score=332.88 Aligned_cols=341 Identities=28% Similarity=0.413 Sum_probs=289.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-- 415 (768)
++.+||+++||++||||||+.+|++ ..+|++.+|.+||+|+.+++.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG----------------------------vwT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG----------------------------VWTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc----------------------------eeeechhHHHhcCcEEEeccccCceEe
Confidence 4679999999999999999999994 2478999999999999988764211
Q ss_pred ------------------C------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH
Q 004202 416 ------------------K------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 471 (768)
Q Consensus 416 ------------------~------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l 471 (768)
. -+.+.|+|+|||+-++.+|++|++..|+|||||+|+++. .++||+||+
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc-------PQPQT~EHl 132 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTREHL 132 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC-------CCCchHHHH
Confidence 0 156899999999999999999999999999999999975 679999999
Q ss_pred HHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcch
Q 004202 472 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCL 551 (768)
Q Consensus 472 ~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~L 551 (768)
..+.-+|++++|||-||+|++. .++..+-.+++.+|++..-- .+.|+||+||..+.||+. |
T Consensus 133 ~AleIigik~iiIvQNKIDlV~--~E~AlE~y~qIk~FvkGt~A--e~aPIIPiSA~~~~NIDa---------------l 193 (415)
T COG5257 133 MALEIIGIKNIIIVQNKIDLVS--RERALENYEQIKEFVKGTVA--ENAPIIPISAQHKANIDA---------------L 193 (415)
T ss_pred HHHhhhccceEEEEecccceec--HHHHHHHHHHHHHHhccccc--CCCceeeehhhhccCHHH---------------H
Confidence 9999999999999999999996 67766677888888876543 467899999999999964 9
Q ss_pred hhhh-hccCCCCCCCCCCceeeeEeEEeeC---------CCcEEEEEEEecCcccCCCEEEEccCCe------------e
Q 004202 552 LDAI-DSLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE------------V 609 (768)
Q Consensus 552 Le~L-~~l~~~~~~~~~plr~~I~dv~~~~---------~G~V~v~G~V~sG~L~~Gd~v~i~P~~~------------~ 609 (768)
+++| ..++.|.++.++|.+|.|.+.|.+. .|.| +.|.+.+|.|++||+|.|.|.-. .
T Consensus 194 ~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGV-iGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~ 272 (415)
T COG5257 194 IEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGV-IGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPIT 272 (415)
T ss_pred HHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCce-ecceeeeeeEecCCeEEecCCeEeecCCceEEEEee
Confidence 9999 6689999999999999999999764 5778 89999999999999999999631 4
Q ss_pred eEEEeeeecccccceeccCCceEEEecccc----cccccCCcccccCCCCcceeeEEEEEEEeeC---------CCCCcc
Q 004202 610 GTVHSIERDSQSCSVARAGDNIAVSLQGID----VSRVMSGGVLCHPDFPVAIATHLELKVLVLD---------FAPPIL 676 (768)
Q Consensus 610 ~~VksI~~~~~~v~~A~aGd~V~l~L~gi~----~~~i~rG~VL~~~~~p~~~~~~F~a~i~vl~---------~~~pI~ 676 (768)
.+|.||+-....+++|++|-.|++.- .+| ..|...|.|+..++..|++...|+.+..+|. ...||+
T Consensus 273 T~i~Sl~ag~~~~~ea~PGGLvgvGT-~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik 351 (415)
T COG5257 273 TEIVSLQAGGEDVEEARPGGLVGVGT-KLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIK 351 (415)
T ss_pred EEEEEEEeCCeeeeeccCCceEEEec-ccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCccccccccccc
Confidence 68999999999999999999999973 333 3456678888899998999999999999886 135999
Q ss_pred CCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcceEEE-Ee---CC
Q 004202 677 IGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALGRAFL-RS---SG 752 (768)
Q Consensus 677 ~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~~~~~~lGRfIL-R~---~g 752 (768)
.|..++|.+|+...-+.|+.... ..+++.|.+|+|.+..+ |..| |+ -.
T Consensus 352 ~~E~Lml~VGtatT~GvV~~~k~----------------------d~~ev~Lk~Pvcae~g~------rvaisRri~~rW 403 (415)
T COG5257 352 TNEVLMLNVGTATTVGVVTSAKK----------------------DEIEVKLKRPVCAEIGE------RVAISRRIGNRW 403 (415)
T ss_pred CCCeEEEEeecceeEEEEEEecC----------------------ceEEEEeccceecCCCC------EEEEEeeecceE
Confidence 99999999999988888876521 25778888999999876 6665 43 24
Q ss_pred cEEEEEEEEe
Q 004202 753 RTIAVGIVTR 762 (768)
Q Consensus 753 ~TvgvG~V~~ 762 (768)
|.+|+|.|..
T Consensus 404 RLIG~G~ik~ 413 (415)
T COG5257 404 RLIGYGTIKE 413 (415)
T ss_pred EEEeEEEEec
Confidence 8999999874
No 31
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-39 Score=348.72 Aligned_cols=369 Identities=36% Similarity=0.652 Sum_probs=326.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.+.+++|.++||+++||||+.+ +.++.++.+.++++++++.+.++|+|.|+|.+|....|+++|+|++.....|.+.
T Consensus 4 ~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~ 80 (391)
T KOG0052|consen 4 EKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 80 (391)
T ss_pred cccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccce
Confidence 3467999999999999999998 6779999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc--c
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--Y 494 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~--~ 494 (768)
.+.++++|.|||.+|.++|+.+..+||.++++|.+..|.||+++.. .+|++||..++..+|+.++|+.+||||... +
T Consensus 81 k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagisk-ngqt~ehalla~tlgv~qliv~v~k~D~~~~~~ 159 (391)
T KOG0052|consen 81 KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK-NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 159 (391)
T ss_pred eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccc-cchhhhhhhhhccccceeeeEEeecccccCCCc
Confidence 9999999999999999999999999999999999999999999886 589999999999999999999999999764 5
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCCCCCceeeeE
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~~~plr~~I~ 574 (768)
+..++.++.+......+..++.+ ... ..
T Consensus 160 s~~r~~ei~k~~~~~~~~~g~n~----------------------------------~~~------------------~~ 187 (391)
T KOG0052|consen 160 SEARYEEIKKEVSSYIKKIGYNP----------------------------------AAV------------------LQ 187 (391)
T ss_pred cccchhhhheeeeeeeeccccCC----------------------------------hhh------------------hc
Confidence 56666665544444433333211 000 23
Q ss_pred eEEeeCCCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCcccccCC-
Q 004202 575 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD- 653 (768)
Q Consensus 575 dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~- 653 (768)
+++... . .| +..|.++.++.+...|.....+|++..+++.....+.+|++|++..+++...++++|+++.+..
T Consensus 188 ~~~~~~--g---~~-~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~ 261 (391)
T KOG0052|consen 188 DVYKIG--G---IG-VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKN 261 (391)
T ss_pred cceeec--c---ee-eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceeccccc
Confidence 445543 1 12 7888899999999999888889999999988888999999999999999999999999998754
Q ss_pred CCcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEE
Q 004202 654 FPVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVC 733 (768)
Q Consensus 654 ~p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~ 733 (768)
.|+..+..|++++.+|.|+..|..||-+.|-+|+.+++|++.+|..++|..+|+.+...|.++++++.+.+.+.+.+|+|
T Consensus 262 ~p~~~~~g~t~qviilnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~~ 341 (391)
T KOG0052|consen 262 DPPVEAAGFTAQVIILNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPLC 341 (391)
T ss_pred CCccccccceeeEEEecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCccc
Confidence 45556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccCCcceEEEEeCCcEEEEEEEEeecccC
Q 004202 734 VEEFSNCRALGRAFLRSSGRTIAVGIVTRIIEDQ 767 (768)
Q Consensus 734 ~e~~~~~~~lGRfILR~~g~TvgvG~V~~v~~~~ 767 (768)
++.|++++.+|||.+|+...|+|+|+|..+...+
T Consensus 342 ve~~~~~~~l~rfav~d~~~tvavgvikav~k~~ 375 (391)
T KOG0052|consen 342 VESFSDYVPLGRFAVRDMRQTVAVGVIKAVDKKD 375 (391)
T ss_pred cccccccccccchhhhhhhccccccceeeeeecc
Confidence 9999999999999999999999999999887654
No 32
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=8.5e-36 Score=346.59 Aligned_cols=277 Identities=26% Similarity=0.382 Sum_probs=230.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
.||+|+||+|||||||+++|++..+.+...... -.+++|..++|+++|+|+......+.++++.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v---------------~~~~~D~~~~ErerGiTI~~~~~~v~~~~~ki 66 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAV---------------AERVMDSNDLERERGITILAKNTAIRYNGTKI 66 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccc---------------eeecccCchHHHhCCccEEeeeEEEEECCEEE
Confidence 589999999999999999999887776543210 02589999999999999999999999999999
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHH
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 500 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~ 500 (768)
+|||||||.+|..++.+++..+|++||||||..|. +.|+++++..+...++| +|||+||||+.+ .+++
T Consensus 67 nlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~--------~~qT~~~l~~a~~~~ip-~IVviNKiD~~~---a~~~ 134 (594)
T TIGR01394 67 NIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP--------MPQTRFVLKKALELGLK-PIVVINKIDRPS---ARPD 134 (594)
T ss_pred EEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC--------cHHHHHHHHHHHHCCCC-EEEEEECCCCCC---cCHH
Confidence 99999999999999999999999999999999874 57999999999999999 789999999874 4456
Q ss_pred HHHHHHhHHHhhcCCCCC--CCcEEEeecccCCCcccCCCCcccccccCC-cchhhhh-hccCCCCCCCCCCceeeeEeE
Q 004202 501 SIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAI-DSLRPPPREFSKPLLMPICDV 576 (768)
Q Consensus 501 ~i~~el~~~lk~~g~~~~--~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G-~~LLe~L-~~l~~~~~~~~~plr~~I~dv 576 (768)
++.+++..++..++.... .++++++||++|.+...... .-.| ..|++.| ..+|.|..+.+.||+++|+++
T Consensus 135 ~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~------~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i 208 (594)
T TIGR01394 135 EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD------PSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNL 208 (594)
T ss_pred HHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcc------cccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEE
Confidence 677777777776665432 46899999999986543211 0011 2477776 567777667789999999999
Q ss_pred EeeC-CCcEEEEEEEecCcccCCCEEEEccCCe---eeEEEeeeec----ccccceeccCCceEEEecccccccccCCcc
Q 004202 577 LKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGV 648 (768)
Q Consensus 577 ~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~---~~~VksI~~~----~~~v~~A~aGd~V~l~L~gi~~~~i~rG~V 648 (768)
+..+ .|++ ++|||.+|+|++||.|++.|.+. ..+|++|+.. +.+++.|.|||+|+|+ |+ .++..|++
T Consensus 209 ~~d~~~Grv-~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl--~~i~~Gdt 283 (594)
T TIGR01394 209 DYDEYLGRI-AIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GL--EDINIGET 283 (594)
T ss_pred EeeCCCceE-EEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--CC--cccCCCCE
Confidence 9999 9998 89999999999999999999732 5789999874 6789999999999886 65 56889999
Q ss_pred cccCCCC
Q 004202 649 LCHPDFP 655 (768)
Q Consensus 649 L~~~~~p 655 (768)
||+++.+
T Consensus 284 l~~~~~~ 290 (594)
T TIGR01394 284 IADPEVP 290 (594)
T ss_pred EeCCCcc
Confidence 9987653
No 33
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-35 Score=303.61 Aligned_cols=347 Identities=25% Similarity=0.368 Sum_probs=275.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee---
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 415 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--- 415 (768)
..+||+++||+|+|||||..+|..-.. ....|.++..++||+|.|+++..+..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~S------------------------TaAFDk~pqS~eRgiTLDLGFS~~~v~~p 61 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGS------------------------TAAFDKHPQSTERGITLDLGFSTMTVLSP 61 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhcc------------------------chhhccCCcccccceeEeecceeeecccc
Confidence 358999999999999999999983211 12467888899999999999887753
Q ss_pred ------CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004202 416 ------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 416 ------~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
+..+++|+|+|||..+++..+.++...|+.|||||+..|. +.|+.|++.+...+-.+ +|||+||+
T Consensus 62 arLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~--------QtQtAEcLiig~~~c~k-lvvvinki 132 (522)
T KOG0461|consen 62 ARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK--------QTQTAECLIIGELLCKK-LVVVINKI 132 (522)
T ss_pred cccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc--------ccccchhhhhhhhhccc-eEEEEecc
Confidence 2356899999999999999999999999999999999884 68999999877766655 89999999
Q ss_pred cccccc--hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccC----CCcccCCCCcccccccCCcchhhhh-hccCCCC
Q 004202 490 DAVQYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN----QNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPP 562 (768)
Q Consensus 490 Dlv~~s--~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG----~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~ 562 (768)
|..... ...+++....++.-|+..+|. .+.|++++||+.| ++|.+ |.++| ..+-.|.
T Consensus 133 d~lpE~qr~ski~k~~kk~~KtLe~t~f~-g~~PI~~vsa~~G~~~~~~i~e---------------L~e~l~s~if~P~ 196 (522)
T KOG0461|consen 133 DVLPENQRASKIEKSAKKVRKTLESTGFD-GNSPIVEVSAADGYFKEEMIQE---------------LKEALESRIFEPK 196 (522)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhcCcC-CCCceeEEecCCCccchhHHHH---------------HHHHHHHhhcCCC
Confidence 987532 245677788888889999987 4689999999999 55543 77888 4567888
Q ss_pred CCCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccc
Q 004202 563 REFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVS 641 (768)
Q Consensus 563 ~~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~ 641 (768)
++.+.||.|.|+++|.++ .|+| ++|+|.+|.|+.|+.|.+...+..-+||+||+++.++.+|.+|+++++++...+..
T Consensus 197 Rd~~gpflm~vDHCF~IKGQGTV-~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~k 275 (522)
T KOG0461|consen 197 RDEEGPFLMAVDHCFAIKGQGTV-LTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEK 275 (522)
T ss_pred cCCCCCeEEEeeeeEEeccCceE-EeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHH
Confidence 999999999999999999 9999 89999999999999999977788889999999999999999999999999988888
Q ss_pred cccCCcccccCCCCcceeeEEEE--EEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEe--------ecccc--cCccc
Q 004202 642 RVMSGGVLCHPDFPVAIATHLEL--KVLVLDFAPPILIGSQLECHIHHAKEAARIVKITS--------LLDTK--TGKVT 709 (768)
Q Consensus 642 ~i~rG~VL~~~~~p~~~~~~F~a--~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~--------~lD~~--tg~~~ 709 (768)
.+.|| +++.|+..-+ ....-+ +..-+ ...+|..-.+.++-+|+-+++|++.-+.. .+|.+ -++ .
T Consensus 276 lleRg-i~~~pg~Lk~-~~avl~~vepI~y-fr~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E-~ 351 (522)
T KOG0461|consen 276 LLERG-ICGPPGTLKS-TKAVLATVEPIQY-FRKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGE-F 351 (522)
T ss_pred HHhcc-ccCCCcccce-eeeeeEeecchHH-HhhhhhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccc-c
Confidence 88887 4555554322 111111 11111 34677777777888899999999886641 11110 011 1
Q ss_pred ccCCcccCCCCeEEEEEEeCceEEeecccc
Q 004202 710 KKSPRCLTAKQSAIVEVALQEPVCVEEFSN 739 (768)
Q Consensus 710 k~~p~~L~~gd~a~v~l~l~~pI~~e~~~~ 739 (768)
.--|..+.+.+...+.|.|.+||..++|+.
T Consensus 352 d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s~ 381 (522)
T KOG0461|consen 352 DMLPALLAPCDVIQALFSFEKPVFLPEYSN 381 (522)
T ss_pred ccChhhcCCchheeeeeeecccccCccccc
Confidence 224667888888899999999999999863
No 34
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=2.7e-34 Score=296.40 Aligned_cols=216 Identities=55% Similarity=0.989 Sum_probs=194.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
||+++||+|||||||+++|++..+.+....+.++++.+...|+.++.|+|++|...+|+++|+|++.....|.+.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999999999999988888888888889999999999999999999999999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc--ccchhhH
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QYSKDRF 499 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv--~~s~e~~ 499 (768)
|||||||.+|...++.++..+|++|+|||+..+.++.+|.. ..|+.+++.++..++++++|||+||||+. .++++.+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEK-GGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCcccccccc-ccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 99999999999999999999999999999999766554532 46899999888888987799999999998 3556778
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCC
Q 004202 500 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 561 (768)
Q Consensus 500 ~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~ 561 (768)
+.+.+++..+++..++....++++|+||++|.|+.++. ..++||+|++|+++|+.+.++
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~---~~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKS---ENMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCC---CCCCCccCCcHHHHHhCCCCC
Confidence 88999999999988887667899999999999998755 358999999999999887654
No 35
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=325.63 Aligned_cols=278 Identities=26% Similarity=0.378 Sum_probs=227.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...||+|+||+|+|||||+++|++..+.+...... -.+++|..++|+++|+|+......+.++++
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~---------------~~~v~D~~~~E~erGiTi~~~~~~i~~~~~ 68 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAET---------------QERVMDSNDLEKERGITILAKNTAIKWNDY 68 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccccccc---------------ceeeeccccccccCceEEEEEEEEEecCCE
Confidence 35799999999999999999999877766543210 126899999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.++|||||||.+|...+..++..+|++|||||+..|. +.|++.++..+..+++| +|||+||||+.+ .+
T Consensus 69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~--------~~qt~~~l~~a~~~gip-~IVviNKiD~~~---a~ 136 (607)
T PRK10218 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGP--------MPQTRFVTKKAFAYGLK-PIVVINKVDRPG---AR 136 (607)
T ss_pred EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCc--------cHHHHHHHHHHHHcCCC-EEEEEECcCCCC---Cc
Confidence 9999999999999999999999999999999999873 57999999999999999 689999999874 45
Q ss_pred HHHHHHHHhHHHhhcCCCC--CCCcEEEeecccCCCcccCCCCcccccccCC-cchhhhh-hccCCCCCCCCCCceeeeE
Q 004202 499 FDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAI-DSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~--~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G-~~LLe~L-~~l~~~~~~~~~plr~~I~ 574 (768)
++.+.+++..++..++... ..+|++++||++|.|..+.... ..| ..|+++| +.+|+|.++.++||+++|+
T Consensus 137 ~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~------~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~ 210 (607)
T PRK10218 137 PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDM------AEDMTPLYQAIVDHVPAPDVDLDGPFQMQIS 210 (607)
T ss_pred hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCcccc------ccchHHHHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 5566777777776554432 2478999999999975442110 011 2467776 6678787777899999999
Q ss_pred eEEeeC-CCcEEEEEEEecCcccCCCEEEEccC-Ce--eeEEEeeeec----ccccceeccCCceEEEecccccccccCC
Q 004202 575 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS-GE--VGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSG 646 (768)
Q Consensus 575 dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~-~~--~~~VksI~~~----~~~v~~A~aGd~V~l~L~gi~~~~i~rG 646 (768)
+++..+ .|++ ++|||.+|+|++||.|.+.+. +. ..+|.+|... +.++++|.|||+|+++ |+ .++..|
T Consensus 211 k~~~d~~~G~i-~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~~G 285 (607)
T PRK10218 211 QLDYNSYVGVI-GIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT--GL--GELNIS 285 (607)
T ss_pred eeEecCCCcEE-EEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEE--Cc--cccccC
Confidence 999988 9998 899999999999999999886 43 5678888653 6789999999999976 54 557889
Q ss_pred cccccCCC
Q 004202 647 GVLCHPDF 654 (768)
Q Consensus 647 ~VL~~~~~ 654 (768)
|+||+++.
T Consensus 286 dTl~~~~~ 293 (607)
T PRK10218 286 DTVCDTQN 293 (607)
T ss_pred cEEecCCC
Confidence 99998664
No 36
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=3.9e-33 Score=324.98 Aligned_cols=266 Identities=29% Similarity=0.433 Sum_probs=219.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC---
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--- 416 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--- 416 (768)
..||+|+||+|||||||+++|++..+.+....+ -.+.+|..++|+++|+|+......+.+.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~ 66 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREM----------------REQVLDSMDLERERGITIKAQAVRLNYKAKD 66 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccc----------------cccccCCChHHHhcCCCeeeeEEEEEEEcCC
Confidence 579999999999999999999988777754321 1356888999999999999877766542
Q ss_pred --CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 417 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 417 --~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
.+.++|||||||.+|...+..++..+|++|||||++++. ..|+.+++..+...++| +|+|+||+|+.+.
T Consensus 67 g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~--------~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~ 137 (595)
T TIGR01393 67 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGI--------EAQTLANVYLALENDLE-IIPVINKIDLPSA 137 (595)
T ss_pred CCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCC--------CHhHHHHHHHHHHcCCC-EEEEEECcCCCcc
Confidence 378999999999999999999999999999999999874 56888888887788998 8999999999753
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCCCCCCCceeee
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPI 573 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~~~~~plr~~I 573 (768)
+ .+.+.+++...+ ++. ...++++||++|.|+.+ |++.| ..+++|..+.+.||+++|
T Consensus 138 ~---~~~~~~el~~~l---g~~--~~~vi~vSAktG~GI~~---------------Lle~I~~~lp~p~~~~~~pl~~~V 194 (595)
T TIGR01393 138 D---PERVKKEIEEVI---GLD--ASEAILASAKTGIGIEE---------------ILEAIVKRVPPPKGDPDAPLKALI 194 (595)
T ss_pred C---HHHHHHHHHHHh---CCC--cceEEEeeccCCCCHHH---------------HHHHHHHhCCCCCCCCCCCeEEEE
Confidence 2 233344444433 332 12579999999999965 88888 567777777889999999
Q ss_pred EeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecc---cccceeccCCceEEEeccc-ccccccCCcc
Q 004202 574 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDS---QSCSVARAGDNIAVSLQGI-DVSRVMSGGV 648 (768)
Q Consensus 574 ~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~---~~v~~A~aGd~V~l~L~gi-~~~~i~rG~V 648 (768)
++++..+ .|++ ++|||.+|+|++||+|+++|.+...+|++|.... .+++.|.||| |++.++|+ +..+++.||+
T Consensus 195 ~~~~~d~~~G~v-~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdt 272 (595)
T TIGR01393 195 FDSHYDNYRGVV-ALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDT 272 (595)
T ss_pred EEEEEeCCCcEE-EEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCE
Confidence 9999999 9998 8999999999999999999999889999998765 6789999999 66666776 4577999999
Q ss_pred cccCCCC
Q 004202 649 LCHPDFP 655 (768)
Q Consensus 649 L~~~~~p 655 (768)
|++.+.+
T Consensus 273 l~~~~~~ 279 (595)
T TIGR01393 273 ITHVKNP 279 (595)
T ss_pred EECCCCc
Confidence 9876543
No 37
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=3.4e-33 Score=325.77 Aligned_cols=267 Identities=28% Similarity=0.429 Sum_probs=220.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
...||+|+||+|||||||+++|++..+.+....+ -.+++|..++|+++|+|+......+.+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~----------------~~~~lD~~~~ErerGiTi~~~~v~~~~~~~ 69 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM----------------KAQVLDSMDLERERGITIKAQAVRLNYKAK 69 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc----------------ccccccCchHHhhcCCcccccEEEEEEEcc
Confidence 4579999999999999999999988887764321 1367899999999999998877666543
Q ss_pred ---CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004202 417 ---NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 417 ---~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
++.++|||||||.+|...+.+++..+|++|||||++.|+ +.|+.+++.++...++| +|+|+||+|+..
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv--------~~qt~~~~~~~~~~~lp-iIvViNKiDl~~ 140 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV--------EAQTLANVYLALENDLE-IIPVLNKIDLPA 140 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCC--------CHHHHHHHHHHHHCCCC-EEEEEECCCCCc
Confidence 678999999999999999999999999999999999874 56888898888888998 899999999875
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCCCCCCCceee
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMP 572 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~~~~~plr~~ 572 (768)
.. ++.+.+++...+ ++. ...++++||++|.|+.+ |+++| ..+++|..+.+.||++.
T Consensus 141 a~---~~~v~~ei~~~l---g~~--~~~vi~iSAktG~GI~~---------------Ll~~I~~~lp~P~~~~~~pl~~~ 197 (600)
T PRK05433 141 AD---PERVKQEIEDVI---GID--ASDAVLVSAKTGIGIEE---------------VLEAIVERIPPPKGDPDAPLKAL 197 (600)
T ss_pred cc---HHHHHHHHHHHh---CCC--cceEEEEecCCCCCHHH---------------HHHHHHHhCccccCCCCCCceEE
Confidence 32 333444444432 432 13579999999999965 88888 55777777778999999
Q ss_pred eEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec---ccccceeccCCceEEEeccc-ccccccCCc
Q 004202 573 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSGG 647 (768)
Q Consensus 573 I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-~~~~i~rG~ 647 (768)
|.+++..+ .|++ ++|||.+|+|++||+|+++|.+...+|++|... ..+++.|.||| |++.+.++ +..+++.||
T Consensus 198 Vfd~~~d~~~G~v-~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gd 275 (600)
T PRK05433 198 IFDSWYDNYRGVV-VLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGD 275 (600)
T ss_pred EEEEEecCCCceE-EEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCC
Confidence 99999998 9988 899999999999999999999998999999864 57899999999 55555666 456799999
Q ss_pred ccccCCCC
Q 004202 648 VLCHPDFP 655 (768)
Q Consensus 648 VL~~~~~p 655 (768)
+|++...+
T Consensus 276 tl~~~~~~ 283 (600)
T PRK05433 276 TITLAKNP 283 (600)
T ss_pred EEECCCCc
Confidence 99876543
No 38
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=4.3e-33 Score=285.17 Aligned_cols=207 Identities=36% Similarity=0.644 Sum_probs=186.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
||+|+||+|||||||+++|++..+.+..+.+..++..+...+++.+.+++.+|..++|+++|+|++.....+.+++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999999999999988888888888888889999999999999999999999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHH
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 501 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~ 501 (768)
|||||||.+|...++.++..+|++|+|||++.+. ..++.+++.++...+++++|+|+||+|+.++..+.++.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~--------~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~ 152 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV--------LEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc--------cHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHH
Confidence 9999999999999999999999999999999873 46788888888888887788899999998766677888
Q ss_pred HHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCC
Q 004202 502 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 561 (768)
Q Consensus 502 i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~ 561 (768)
+..++..+++.+++. ..++|++||++|.|+.+... .++||+|++||++|+.++++
T Consensus 153 i~~~~~~~~~~~~~~--~~~ii~iSA~~g~ni~~~~~---~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 153 IVADYLAFAAKLGIE--DITFIPISALDGDNVVSRSE---NMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHcCCC--CceEEEEeCCCCCCCccCCC---CCCCCCCCcHHHHHhcCCCC
Confidence 888998888888864 35789999999999987653 58999999999999998876
No 39
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-32 Score=292.94 Aligned_cols=280 Identities=26% Similarity=0.407 Sum_probs=232.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+...||||+.|+|||||||+.+|+.+.+.+..+.-- -...||....|++|||||-..-..+.+++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v---------------~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV---------------AERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccch---------------hhhhcCccchhhhcCcEEEeccceeecCC
Confidence 345799999999999999999999988887654311 12479999999999999998888889999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
.+|+|+|||||.+|--+..+.+...|.++|+|||.+| .++||+-.+..+..+|.+ .||||||+|+.+.
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG--------pMPQTrFVlkKAl~~gL~-PIVVvNKiDrp~A--- 135 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALALGLK-PIVVINKIDRPDA--- 135 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC--------CCCchhhhHHHHHHcCCC-cEEEEeCCCCCCC---
Confidence 9999999999999999999999999999999999998 589999999999999999 5899999999864
Q ss_pred hHHHHHHHHhHHHhhcCCCCC--CCcEEEeecccCCCcccCCCC-cccccccCCcchhhhh-hccCCCCCCCCCCceeee
Q 004202 498 RFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNLVTAPDD-GRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPI 573 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~--~i~~IpVSA~tG~gI~e~~~~-~~~~~wy~G~~LLe~L-~~l~~~~~~~~~plr~~I 573 (768)
+-+++..++..++-.++-... .+|++..||+.|.--.++... ..+ ..|++.| +++|.|..+.++||.|.|
T Consensus 136 rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m------~pLfe~I~~hvp~P~~~~d~PlQ~qv 209 (603)
T COG1217 136 RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDM------APLFETILDHVPAPKGDLDEPLQMQV 209 (603)
T ss_pred CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccch------hHHHHHHHHhCCCCCCCCCCCeEEEE
Confidence 445577777777777665543 368899999999754333221 111 2488887 788999888899999999
Q ss_pred EeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCC---eeeEEEeeeec----ccccceeccCCceEEEecccccccccC
Q 004202 574 CDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---EVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMS 645 (768)
Q Consensus 574 ~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~---~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gi~~~~i~r 645 (768)
...-... .|.+ ..|||.+|++++|+.|.+.-.. ...+|..+..+ +.++++|.|||+|+|+ |+ .++..
T Consensus 210 t~Ldyn~y~GrI-gigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaia--G~--~~~~i 284 (603)
T COG1217 210 TQLDYNSYVGRI-GIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA--GL--EDINI 284 (603)
T ss_pred Eeecccccccee-EEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEc--Cc--ccccc
Confidence 9887777 9998 7999999999999999887643 35677777654 5789999999999987 76 45778
Q ss_pred CcccccCCCC
Q 004202 646 GGVLCHPDFP 655 (768)
Q Consensus 646 G~VL~~~~~p 655 (768)
|++||+++.+
T Consensus 285 gdTi~d~~~~ 294 (603)
T COG1217 285 GDTICDPDNP 294 (603)
T ss_pred cccccCCCCc
Confidence 9999998764
No 40
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-33 Score=305.37 Aligned_cols=265 Identities=31% Similarity=0.395 Sum_probs=222.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
+..|++||.|+|||||||..+|+..++.++....+. .++|..+.||+||||+......+.+.+
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~----------------q~LDkl~vERERGITIkaQtasify~~~ 122 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQE----------------QVLDKLQVERERGITIKAQTASIFYKDG 122 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchh----------------hhhhhhhhhhhcCcEEEeeeeEEEEEcC
Confidence 457999999999999999999999999887654432 468999999999999988777776666
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 418 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
+.++|||||||.||-.+..+.+..+|++||||||++|+ ++||...+.++...|+. +|.|+||+|+...+
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGv--------qAQT~anf~lAfe~~L~-iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGV--------QAQTVANFYLAFEAGLA-IIPVLNKIDLPSAD 193 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCc--------hHHHHHHHHHHHHcCCe-EEEeeeccCCCCCC
Confidence 99999999999999999999999999999999999994 78999999999999998 89999999999765
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCCCCCCCceeeeE
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~~~~~plr~~I~ 574 (768)
.++ +..++..++ ++.+ -+++.+||++|.|+.+ ||++| +.+|+|....+.|||+.|.
T Consensus 194 pe~---V~~q~~~lF---~~~~--~~~i~vSAK~G~~v~~---------------lL~AII~rVPpP~~~~d~plr~Lif 250 (650)
T KOG0462|consen 194 PER---VENQLFELF---DIPP--AEVIYVSAKTGLNVEE---------------LLEAIIRRVPPPKGIRDAPLRMLIF 250 (650)
T ss_pred HHH---HHHHHHHHh---cCCc--cceEEEEeccCccHHH---------------HHHHHHhhCCCCCCCCCcchHHHhh
Confidence 554 666666665 3322 3679999999999965 89987 7899999999999999999
Q ss_pred eEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec---ccccceeccCCceEEEeccc-ccccccCCccc
Q 004202 575 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSGGVL 649 (768)
Q Consensus 575 dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-~~~~i~rG~VL 649 (768)
+.+... .|.+ +.++|..|.+++||+|....+++...|+.+... ..++....|||. +..+.++ +..+.+.|++|
T Consensus 251 ds~yD~y~G~I-~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqv-GyIi~~mr~~~ea~IGdTi 328 (650)
T KOG0462|consen 251 DSEYDEYRGVI-ALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQV-GYIICNMRNVKEAQIGDTI 328 (650)
T ss_pred hhhhhhhcceE-EEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeeccccc-ceeEeccccccccccccee
Confidence 999999 9998 899999999999999999998876666655542 456667777773 3333344 35677889999
Q ss_pred ccCC
Q 004202 650 CHPD 653 (768)
Q Consensus 650 ~~~~ 653 (768)
++..
T Consensus 329 ~~~~ 332 (650)
T KOG0462|consen 329 AHKS 332 (650)
T ss_pred eecc
Confidence 8865
No 41
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.9e-32 Score=295.55 Aligned_cols=267 Identities=27% Similarity=0.429 Sum_probs=231.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-- 415 (768)
....|..|+.|.|||||||..+|+..++.+..+.+.. -++|....||+||||+......+.+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~----------------Q~LDsMdiERERGITIKaq~v~l~Yk~ 70 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRA----------------QVLDSMDIERERGITIKAQAVRLNYKA 70 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHH----------------HhhhhhhhHhhcCceEEeeEEEEEEEe
Confidence 3567999999999999999999999999999887753 4689999999999999876665543
Q ss_pred ---CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004202 416 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 416 ---~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
+.+.++|||||||.+|..+..+.++.|.++||||||++|+ .+||.....++...+.. +|-|+||+||.
T Consensus 71 ~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGv--------eAQTlAN~YlAle~~Le-IiPViNKIDLP 141 (603)
T COG0481 71 KDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV--------EAQTLANVYLALENNLE-IIPVLNKIDLP 141 (603)
T ss_pred CCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccch--------HHHHHHHHHHHHHcCcE-EEEeeecccCC
Confidence 4488999999999999999999999999999999999995 78999999999999998 89999999999
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCCCCCCCcee
Q 004202 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPREFSKPLLM 571 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~~~~~plr~ 571 (768)
..+.++ ++.++...+ |+... ..+.+||++|.||.+ +|++| ..+|+|..+.+.|++.
T Consensus 142 ~Adper---vk~eIe~~i---Gid~~--dav~~SAKtG~gI~~---------------iLe~Iv~~iP~P~g~~~~pLkA 198 (603)
T COG0481 142 AADPER---VKQEIEDII---GIDAS--DAVLVSAKTGIGIED---------------VLEAIVEKIPPPKGDPDAPLKA 198 (603)
T ss_pred CCCHHH---HHHHHHHHh---CCCcc--hheeEecccCCCHHH---------------HHHHHHhhCCCCCCCCCCcceE
Confidence 876665 667777765 66543 448999999999976 88887 7789999999999999
Q ss_pred eeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec---ccccceeccCCceEEEeccc-ccccccCC
Q 004202 572 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRVMSG 646 (768)
Q Consensus 572 ~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-~~~~i~rG 646 (768)
.|.|.+... .|.| +..||..|+|++||+|.++..+....|..+-.+ ..+.+...||+ |+....++ +..+.+.|
T Consensus 199 LifDS~yD~Y~GVv-~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGe-VG~~~a~iK~v~d~~VG 276 (603)
T COG0481 199 LIFDSWYDNYLGVV-VLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGE-VGYIIAGIKDVRDARVG 276 (603)
T ss_pred EEEeccccccceEE-EEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCc-eeEEEEeeeecccCccc
Confidence 999999999 9988 899999999999999999999999999888775 45778899999 56655666 56788999
Q ss_pred cccccCCC
Q 004202 647 GVLCHPDF 654 (768)
Q Consensus 647 ~VL~~~~~ 654 (768)
|+|.+.++
T Consensus 277 DTiT~~~~ 284 (603)
T COG0481 277 DTITLASN 284 (603)
T ss_pred ceEeccCC
Confidence 99986443
No 42
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.97 E-value=4.8e-31 Score=267.67 Aligned_cols=192 Identities=35% Similarity=0.546 Sum_probs=165.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
+++|+++||+|+|||||+++|++... ..|+..+.-.+.+|..++|+++|+|++.+...|++++.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~ 66 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRH 66 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCeE
Confidence 58999999999999999999996421 123222111246899999999999999999999999999
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhH
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 499 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~ 499 (768)
++|+|||||.+|...+..++..+|++|+|||+..|. ..|+++++.++..+++|++|+|+||||++. ..+.+
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~--------~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~~~~ 137 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGP--------MPQTREHLLLARQVGVPYIVVFLNKADMVD-DEELL 137 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCC--------cHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-cHHHH
Confidence 999999999999999999999999999999999873 579999999999999987889999999974 45667
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccC-CcchhhhhhccCCC
Q 004202 500 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK-GPCLLDAIDSLRPP 561 (768)
Q Consensus 500 ~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~-G~~LLe~L~~l~~~ 561 (768)
+.+.+++..+|+.+++.+..++++|+||++|.|+.+ .++||+ |++|+++|+++.++
T Consensus 138 ~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~------~~~w~~~~~~l~~~l~~~~~~ 194 (195)
T cd01884 138 ELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD------PNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred HHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC------CCcchhcHhHHHHHHHhCCCC
Confidence 778899999999999987789999999999999754 379998 79999999876543
No 43
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.97 E-value=1.8e-29 Score=299.58 Aligned_cols=248 Identities=25% Similarity=0.347 Sum_probs=198.4
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
...++++|+|+||+|||||||+++|... .+ .....+|+|++.+...+.+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~--~v-----------------------------~~~e~~GIT~~iga~~v~~ 334 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKT--NV-----------------------------AAGEAGGITQHIGAYQVET 334 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhC--Cc-----------------------------cccccCceeeeccEEEEEE
Confidence 3567899999999999999999999731 11 1112378999999888999
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
+++.++|||||||.+|...+.+++..+|++|||||+++|. +.|+.+++.++...++| +|||+||||+.+++
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv--------~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~ 405 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGV--------MPQTIEAINHAKAAGVP-IIVAINKIDKPGAN 405 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCC--------CHhHHHHHHHHHhcCCc-EEEEEECccccccC
Confidence 8999999999999999999999999999999999999884 67999999999999999 89999999997654
Q ss_pred hhhHHHHHHHHhH---HHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhc---cCCCCCCCCCCc
Q 004202 496 KDRFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS---LRPPPREFSKPL 569 (768)
Q Consensus 496 ~e~~~~i~~el~~---~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~---l~~~~~~~~~pl 569 (768)
.++ +..++.. +...++ ..+++|++||++|.|+.+ |++.|.. +.....+.+.|+
T Consensus 406 ~e~---V~~eL~~~~~~~e~~g---~~vp~vpvSAktG~GI~e---------------Lle~I~~~~e~~~l~~~~~~~~ 464 (787)
T PRK05306 406 PDR---VKQELSEYGLVPEEWG---GDTIFVPVSAKTGEGIDE---------------LLEAILLQAEVLELKANPDRPA 464 (787)
T ss_pred HHH---HHHHHHHhcccHHHhC---CCceEEEEeCCCCCCchH---------------HHHhhhhhhhhhhcccCCCCCc
Confidence 333 3333322 122222 247899999999999976 5555421 122334457889
Q ss_pred eeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee-cccccceeccCCceEEEecccccccc-cCC
Q 004202 570 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-DSQSCSVARAGDNIAVSLQGIDVSRV-MSG 646 (768)
Q Consensus 570 r~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~-~~~~v~~A~aGd~V~l~L~gi~~~~i-~rG 646 (768)
+..|.+++..+ .|.+ ++|+|.+|+|++||.|+++| ...+|++|+. ++.+++.|.||+.|.|. |++ .+ ..|
T Consensus 465 ~g~V~es~~dkg~G~v-~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl~--~~p~~G 537 (787)
T PRK05306 465 RGTVIEAKLDKGRGPV-ATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GLS--GVPQAG 537 (787)
T ss_pred EEEEEEEEEcCCCeEE-EEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEEe--CCC--CCCCCC
Confidence 99999999988 9998 89999999999999999986 5789999998 47799999999999886 442 23 579
Q ss_pred ccccc
Q 004202 647 GVLCH 651 (768)
Q Consensus 647 ~VL~~ 651 (768)
|+|+.
T Consensus 538 d~l~~ 542 (787)
T PRK05306 538 DEFVV 542 (787)
T ss_pred CEEEE
Confidence 98873
No 44
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.97 E-value=2.5e-29 Score=291.94 Aligned_cols=247 Identities=26% Similarity=0.361 Sum_probs=194.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
...+.++|+++||+|+|||||+++|.+. .+ .....+|+|++.+...+.+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~--~v-----------------------------~~~e~~GIT~~ig~~~v~~ 131 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKT--KV-----------------------------AQGEAGGITQHIGAYHVEN 131 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhC--Cc-----------------------------ccccCCceeecceEEEEEE
Confidence 3456789999999999999999999842 10 1122368999998888887
Q ss_pred CCe-EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 416 KNY-HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 416 ~~~-~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
.+. .++|||||||++|...+.+++..+|++|||||+++|. ++|+.+++.++...++| +||++||+|+.+.
T Consensus 132 ~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv--------~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~ 202 (587)
T TIGR00487 132 EDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGV--------MPQTIEAISHAKAANVP-IIVAINKIDKPEA 202 (587)
T ss_pred CCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCC--------CHhHHHHHHHHHHcCCC-EEEEEECcccccC
Confidence 554 8999999999999999999999999999999999874 67999999999999999 8999999999753
Q ss_pred chhhHHHHHHHHhH---HHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhh---ccCCCCCCCCCC
Q 004202 495 SKDRFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID---SLRPPPREFSKP 568 (768)
Q Consensus 495 s~e~~~~i~~el~~---~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~---~l~~~~~~~~~p 568 (768)
+.++ +...+.. ....++ ..++++|+||++|+|+.+ |++.|. .+.......+.|
T Consensus 203 ~~e~---v~~~L~~~g~~~~~~~---~~~~~v~iSAktGeGI~e---------------Ll~~I~~~~~~~~l~~~~~~~ 261 (587)
T TIGR00487 203 NPDR---VKQELSEYGLVPEDWG---GDTIFVPVSALTGDGIDE---------------LLDMILLQSEVEELKANPNGQ 261 (587)
T ss_pred CHHH---HHHHHHHhhhhHHhcC---CCceEEEEECCCCCChHH---------------HHHhhhhhhhhccccCCCCCC
Confidence 3332 3333322 111222 236799999999999976 555552 222233345689
Q ss_pred ceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee-cccccceeccCCceEEEecccccccc-cC
Q 004202 569 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-DSQSCSVARAGDNIAVSLQGIDVSRV-MS 645 (768)
Q Consensus 569 lr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~-~~~~v~~A~aGd~V~l~L~gi~~~~i-~r 645 (768)
++++|.+++..+ .|++ ++|+|.+|+|++||.|.++|. ..+|++|+. +...++.|.||+.|.|. |++ .+ ..
T Consensus 262 ~~~~V~ev~~~~g~G~v-~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~--~~p~a 334 (587)
T TIGR00487 262 ASGVVIEAQLDKGRGPV-ATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEIL--GLS--DVPAA 334 (587)
T ss_pred ceeEEEEEEEeCCCcEE-EEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEEe--CCC--CCCCC
Confidence 999999999988 9998 899999999999999999985 578999998 67899999999999876 543 22 56
Q ss_pred Ccccc
Q 004202 646 GGVLC 650 (768)
Q Consensus 646 G~VL~ 650 (768)
|+.+.
T Consensus 335 Gd~~~ 339 (587)
T TIGR00487 335 GDEFI 339 (587)
T ss_pred CCEEE
Confidence 87775
No 45
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.96 E-value=7.1e-29 Score=296.79 Aligned_cols=286 Identities=27% Similarity=0.357 Sum_probs=216.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee---
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 415 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--- 415 (768)
...||+|+||+|||||||+++|++..+.+.... .|. ++.+|..++|++||+|++.+...+.+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 83 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AGE-----QLALDFDEEEQARGITIKAANVSMVHEYE 83 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cCc-----ceecCccHHHHHhhhhhhccceEEEEEec
Confidence 467999999999999999999999888776531 121 45789999999999999988766544
Q ss_pred -CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 416 -KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 416 -~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
.++.++|+|||||.+|...+..++..+|++|+|||+..|+ ..|++.++.++...++| .||++||||+...
T Consensus 84 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~--------~~~t~~~~~~~~~~~~~-~iv~iNK~D~~~~ 154 (731)
T PRK07560 84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGV--------MPQTETVLRQALRERVK-PVLFINKVDRLIK 154 (731)
T ss_pred CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCC--------CccHHHHHHHHHHcCCC-eEEEEECchhhcc
Confidence 5788999999999999999999999999999999999884 57999999998889998 6899999998632
Q ss_pred --------chhhHHHHHHHHhHHHhhcC---------CCCCCCcEEEeecccCCCcccCC------------------CC
Q 004202 495 --------SKDRFDSIKVQLGTFLRSCG---------FKDASLTWIPLSALENQNLVTAP------------------DD 539 (768)
Q Consensus 495 --------s~e~~~~i~~el~~~lk~~g---------~~~~~i~~IpVSA~tG~gI~e~~------------------~~ 539 (768)
..+++..+..++..++..+. +.+..-.+++.||+.+.++.... ..
T Consensus 155 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~ 234 (731)
T PRK07560 155 ELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQ 234 (731)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCH
Confidence 23445555566665554332 22222346678999888774100 00
Q ss_pred cccccccCC-cchhhhh-hccCCCCC-------------------------CCCCCceeeeEeEEeeC-CCcEEEEEEEe
Q 004202 540 GRLLSWYKG-PCLLDAI-DSLRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQVSACGKLE 591 (768)
Q Consensus 540 ~~~~~wy~G-~~LLe~L-~~l~~~~~-------------------------~~~~plr~~I~dv~~~~-~G~V~v~G~V~ 591 (768)
..+..|+-- ..||++| ..+|.|.. +.+.|+.+.|.+++..+ .|.+ ++|||.
T Consensus 235 ~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~v-a~~RV~ 313 (731)
T PRK07560 235 KELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEV-ATGRVF 313 (731)
T ss_pred HHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeE-EEEEEE
Confidence 000111100 1478877 44565531 22458889999998888 8988 899999
Q ss_pred cCcccCCCEEEEccCCeeeEEEeeeec----ccccceeccCCceEEEecccccccccCCcccccCC
Q 004202 592 AGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 592 sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~ 653 (768)
+|+|++||.|++.+.+...+|..|... ..+++.|.||++|+|. |+ .++.+|++|+.+.
T Consensus 314 sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~--gl--~~~~~GdtL~~~~ 375 (731)
T PRK07560 314 SGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVT--GL--KDARAGETVVSVE 375 (731)
T ss_pred EeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEE--cc--cccccCCEEeCCC
Confidence 999999999999998888889898764 5689999999999985 55 3567899998754
No 46
>PRK00007 elongation factor G; Reviewed
Probab=99.96 E-value=8.3e-28 Score=286.10 Aligned_cols=281 Identities=27% Similarity=0.353 Sum_probs=205.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...||+|+||+|+|||||+++|++..+.+..- |+- ..-.+.+|..++|+++|+|++.....+.+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------g~v-~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~ 75 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKI------------GEV-HDGAATMDWMEQEQERGITITSAATTCFWKDH 75 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCcccc------------ccc-cCCcccCCCCHHHHhCCCCEeccEEEEEECCe
Confidence 46799999999999999999999877765321 000 01246899999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
+++|+|||||.+|..++.+++..+|++|+||||..|. +.|+++++.++..+++| +||++||||+.+.+
T Consensus 76 ~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~--------~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~--- 143 (693)
T PRK00007 76 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGV--------EPQSETVWRQADKYKVP-RIAFVNKMDRTGAD--- 143 (693)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCc--------chhhHHHHHHHHHcCCC-EEEEEECCCCCCCC---
Confidence 9999999999999999999999999999999999884 67999999999999999 68999999998532
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCC-CcccCC----------------------------------------
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVTAP---------------------------------------- 537 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~-gI~e~~---------------------------------------- 537 (768)
+..+.+++...+... .-...+|+|+..+. |+.+..
T Consensus 144 ~~~~~~~i~~~l~~~----~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v 219 (693)
T PRK00007 144 FYRVVEQIKDRLGAN----PVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAA 219 (693)
T ss_pred HHHHHHHHHHHhCCC----eeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHH
Confidence 333444444433211 01123444444330 000000
Q ss_pred --C----------------------------CcccccccCC--------cchhhhh-hccCCCCC---------------
Q 004202 538 --D----------------------------DGRLLSWYKG--------PCLLDAI-DSLRPPPR--------------- 563 (768)
Q Consensus 538 --~----------------------------~~~~~~wy~G--------~~LLe~L-~~l~~~~~--------------- 563 (768)
. ...+.|.|-| ..||++| ..+|.|..
T Consensus 220 ~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~ 299 (693)
T PRK00007 220 AEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEE 299 (693)
T ss_pred HccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccc
Confidence 0 0001111111 2488888 44555431
Q ss_pred -----CCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec----ccccceeccCCceEE
Q 004202 564 -----EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAV 633 (768)
Q Consensus 564 -----~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l 633 (768)
+.+.|+.+.|+++...+ .|.+ +++||.+|+|+.||+|+..-.++..+|..|... ..++++|.||+++++
T Consensus 300 ~~~~~~~~~~l~a~VfK~~~d~~~G~i-a~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i 378 (693)
T PRK00007 300 VERKASDDEPFSALAFKIMTDPFVGKL-TFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAA 378 (693)
T ss_pred eeecCCCCCCeEEEEEEeeecCCCCcE-EEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEE
Confidence 12568888999998877 7987 899999999999999986555556677777653 578999999999988
Q ss_pred EecccccccccCCcccccCC
Q 004202 634 SLQGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 634 ~L~gi~~~~i~rG~VL~~~~ 653 (768)
. |++ +++.|++|+++.
T Consensus 379 ~--gl~--~~~~GdtL~~~~ 394 (693)
T PRK00007 379 V--GLK--DTTTGDTLCDEK 394 (693)
T ss_pred e--CCc--cCCcCCEeeCCC
Confidence 5 653 467899998654
No 47
>PRK12739 elongation factor G; Reviewed
Probab=99.96 E-value=1.2e-27 Score=284.83 Aligned_cols=270 Identities=26% Similarity=0.345 Sum_probs=206.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..+||+|+||+|+|||||+++|++..+.+..- .. .. .-.+.+|..++|+++|+|++.....+.++++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~--~~-------v~----~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 73 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKI--GE-------VH----DGAATMDWMEQEQERGITITSAATTCFWKGH 73 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCcccc--cc-------cc----CCccccCCChhHhhcCCCccceeEEEEECCE
Confidence 46899999999999999999999877765321 00 00 1146889999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
+++|||||||.+|..++..++..+|++|+||||..|. ..|+++++.++...++| +||++||||+...+
T Consensus 74 ~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~--------~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~--- 141 (691)
T PRK12739 74 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGV--------EPQSETVWRQADKYGVP-RIVFVNKMDRIGAD--- 141 (691)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---
Confidence 9999999999999999999999999999999999873 67999999999999999 68999999998532
Q ss_pred HHHHHHHHhHHHhhcCC---------------------------------------------------------------
Q 004202 499 FDSIKVQLGTFLRSCGF--------------------------------------------------------------- 515 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~--------------------------------------------------------------- 515 (768)
+..+.+++...+....+
T Consensus 142 ~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~d 221 (691)
T PRK12739 142 FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVD 221 (691)
T ss_pred HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcC
Confidence 33344444443321000
Q ss_pred ---------------------------CCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhh-ccCCCCC----
Q 004202 516 ---------------------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPPR---- 563 (768)
Q Consensus 516 ---------------------------~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~-~l~~~~~---- 563 (768)
...-+|++..||+++.|+. .||++|. .+|.|..
T Consensus 222 d~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~---------------~LLd~I~~~lPsP~~~~~~ 286 (691)
T PRK12739 222 EELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQ---------------PLLDAVVDYLPSPLDVPAI 286 (691)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHH---------------HHHHHHHHHCCChhhcccc
Confidence 0011233334555555543 4899884 4555421
Q ss_pred ---------------CCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee----cccccc
Q 004202 564 ---------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCS 623 (768)
Q Consensus 564 ---------------~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~ 623 (768)
+.+.|+.+.|++++..+ .|.+ +++||.+|+|+.||.|+..-.++..+|..|.. ...+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i-~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 365 (691)
T PRK12739 287 KGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRL-TFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIK 365 (691)
T ss_pred ccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeE-EEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCccccc
Confidence 23568899999999887 7988 89999999999999998766666667777654 357899
Q ss_pred eeccCCceEEEecccccccccCCcccccCC
Q 004202 624 VARAGDNIAVSLQGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 624 ~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~ 653 (768)
.|.|||+++|. |++ +++.|++|++..
T Consensus 366 ~~~aGdI~~i~--gl~--~~~~gdtl~~~~ 391 (691)
T PRK12739 366 EVYAGDIAAAV--GLK--DTTTGDTLCDEK 391 (691)
T ss_pred ccCCCCEEEEe--CCC--cccCCCEEeCCC
Confidence 99999999887 654 468899998654
No 48
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.96 E-value=1.7e-27 Score=280.37 Aligned_cols=247 Identities=27% Similarity=0.337 Sum_probs=189.8
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 415 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~- 415 (768)
..+.++|+|+||+|||||||+++|+.... .....+|+|++.+...+.+
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~-------------------------------~~~e~~GiTq~i~~~~v~~~ 289 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQI-------------------------------AQKEAGGITQKIGAYEVEFE 289 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccC-------------------------------ccccCCccccccceEEEEEE
Confidence 45778999999999999999999984211 1122367888776655544
Q ss_pred ---CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004202 416 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 416 ---~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
.+..++|||||||+.|..++.+++..+|++||||||..|. +.|+.+++..+...++| +|||+||+|+.
T Consensus 290 ~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv--------~~QT~E~I~~~k~~~iP-iIVViNKiDl~ 360 (742)
T CHL00189 290 YKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGV--------KPQTIEAINYIQAANVP-IIVAINKIDKA 360 (742)
T ss_pred ecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCC--------ChhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence 3589999999999999999999999999999999999873 57999999999999998 89999999997
Q ss_pred ccchhhHHHHHHHHhHH---HhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccC---CCCCCCC
Q 004202 493 QYSKDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLR---PPPREFS 566 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~---lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~---~~~~~~~ 566 (768)
..+ ++.+..++..+ ...++ ..++++++||++|.|+.+ |++.|..+. ......+
T Consensus 361 ~~~---~e~v~~eL~~~~ll~e~~g---~~vpvv~VSAktG~GIde---------------Lle~I~~l~e~~~lk~~~~ 419 (742)
T CHL00189 361 NAN---TERIKQQLAKYNLIPEKWG---GDTPMIPISASQGTNIDK---------------LLETILLLAEIEDLKADPT 419 (742)
T ss_pred ccC---HHHHHHHHHHhccchHhhC---CCceEEEEECCCCCCHHH---------------HHHhhhhhhhhhcccCCCC
Confidence 532 33344444322 22222 246899999999999976 666553321 2223345
Q ss_pred CCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee-cccccceeccCCceEEEeccccccccc
Q 004202 567 KPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER-DSQSCSVARAGDNIAVSLQGIDVSRVM 644 (768)
Q Consensus 567 ~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~-~~~~v~~A~aGd~V~l~L~gi~~~~i~ 644 (768)
.|+...|.++...+ .|++ ++|+|.+|+|++||.|+++| ..++|++|.. +..++..|.||+.|.|. |++ ....
T Consensus 420 ~~~~g~V~e~~iD~~~G~V-~~~~V~sGtLr~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV~I~--gl~-~~~~ 493 (742)
T CHL00189 420 QLAQGIILEAHLDKTKGPV-ATILVQNGTLHIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVVEIW--GLS-SVPA 493 (742)
T ss_pred CCceEEEEEEEEcCCCceE-EEEEEEcCEEecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCceEec--Ccc-cCCC
Confidence 67888888887777 8998 89999999999999999998 4689999985 47899999999999774 542 2244
Q ss_pred CCcccc
Q 004202 645 SGGVLC 650 (768)
Q Consensus 645 rG~VL~ 650 (768)
.|+.|.
T Consensus 494 ~Gd~l~ 499 (742)
T CHL00189 494 TGEHFQ 499 (742)
T ss_pred CCCEEE
Confidence 577764
No 49
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.95 E-value=5e-28 Score=243.51 Aligned_cols=181 Identities=39% Similarity=0.639 Sum_probs=155.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--e
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--S 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~--~ 415 (768)
++.++|+++||+|||||||+++|++..+.+....... .....++..++|+++|+|++.....+. .
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~-------------~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~ 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEE-------------TKNAFLDKHPEERERGITIDLSFISFEKNE 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHH-------------HHHCHHHSSHHHHHCTSSSSSEEEEEEBTE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccc-------------cccccccccchhhhcccccccccccccccc
Confidence 3568999999999999999999999887776554322 012346788999999999999999998 8
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
.++.++|+|||||.+|.+++.+++..+|++|+||||..|. ..|+.+++.++..+++| +|||+||||++
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~--------~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--- 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGI--------QPQTEEHLKILRELGIP-IIVVLNKMDLI--- 135 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBS--------THHHHHHHHHHHHTT-S-EEEEEETCTSS---
T ss_pred cccceeecccccccceeecccceecccccceeeeeccccc--------ccccccccccccccccc-eEEeeeeccch---
Confidence 9999999999999999999999999999999999999883 68999999999999999 99999999998
Q ss_pred hhhHHHHHHHHh-HHHhhcCCCC-CCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhcc
Q 004202 496 KDRFDSIKVQLG-TFLRSCGFKD-ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL 558 (768)
Q Consensus 496 ~e~~~~i~~el~-~~lk~~g~~~-~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l 558 (768)
..++.++.+++. .+++..++.. ..++++|+||++|.|+.+ |+++|...
T Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~---------------Ll~~l~~~ 185 (188)
T PF00009_consen 136 EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDE---------------LLEALVEL 185 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHH---------------HHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHH---------------HHHHHHHh
Confidence 567777778877 6667888765 468999999999999965 88888554
No 50
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.95 E-value=4.2e-27 Score=280.26 Aligned_cols=281 Identities=27% Similarity=0.363 Sum_probs=203.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...||+|+||+|+|||||+++|++..+.+..- .. .....+.+|..+.|+++|+|++.....+.++++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~--~~-----------~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~ 75 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKI--GE-----------VHDGAATMDWMEQEKERGITITSAATTVFWKGH 75 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCcccc--cc-----------ccCCccccCCCHHHHhcCCCEecceEEEEECCe
Confidence 46799999999999999999999877765321 00 012347889999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
+++|||||||.+|...+..++..+|++|+|||+..|. ..|+.+++.++...++| +|+|+||||+...+
T Consensus 76 ~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~--------~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~--- 143 (689)
T TIGR00484 76 RINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGV--------QPQSETVWRQANRYEVP-RIAFVNKMDKTGAN--- 143 (689)
T ss_pred EEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCC--------ChhHHHHHHHHHHcCCC-EEEEEECCCCCCCC---
Confidence 9999999999999999999999999999999999873 56889999999999999 68899999998633
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCC-CcccCC----------------------------------------
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVTAP---------------------------------------- 537 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~-gI~e~~---------------------------------------- 537 (768)
+..+.+++...+.... ....+|+|+..+. |+.+..
T Consensus 144 ~~~~~~~i~~~l~~~~----~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 219 (689)
T TIGR00484 144 FLRVVNQIKQRLGANA----VPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVA 219 (689)
T ss_pred HHHHHHHHHHHhCCCc----eeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 3334444444332111 1123444444332 100000
Q ss_pred ----------------C-------------CcccccccCC--------cchhhhh-hccCCCCC----------------
Q 004202 538 ----------------D-------------DGRLLSWYKG--------PCLLDAI-DSLRPPPR---------------- 563 (768)
Q Consensus 538 ----------------~-------------~~~~~~wy~G--------~~LLe~L-~~l~~~~~---------------- 563 (768)
+ ...+.|-|-| ..||++| ..+|.|..
T Consensus 220 e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 299 (689)
T TIGR00484 220 EFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIE 299 (689)
T ss_pred hcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceee
Confidence 0 0000111111 3488888 44555431
Q ss_pred ---CCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec----ccccceeccCCceEEEe
Q 004202 564 ---EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSL 635 (768)
Q Consensus 564 ---~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L 635 (768)
+.+.|+.+.|.++...+ .|.+ +++||.+|+|+.||+|+..-.+...+|..|... ..+++.|.|||+++|.
T Consensus 300 ~~~~~~~~l~a~VfK~~~d~~~G~i-~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~- 377 (689)
T TIGR00484 300 RKASDDEPFSALAFKVATDPFVGQL-TFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAI- 377 (689)
T ss_pred ecCCCCCceEEEEEEeeecCCCCeE-EEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEc-
Confidence 12567889999998888 8877 899999999999999997655555566666542 4689999999999885
Q ss_pred cccccccccCCcccccCC
Q 004202 636 QGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 636 ~gi~~~~i~rG~VL~~~~ 653 (768)
|++ +++.|++|+++.
T Consensus 378 -gl~--~~~~gdtl~~~~ 392 (689)
T TIGR00484 378 -GLK--DTTTGDTLCDPK 392 (689)
T ss_pred -CCC--CCCCCCEEeCCC
Confidence 653 467899998654
No 51
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.95 E-value=9.7e-27 Score=267.75 Aligned_cols=277 Identities=25% Similarity=0.348 Sum_probs=206.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...+|+|+||+|||||||+++|++..+.+....- ..++.. .....+|..+.|+++|+|+......+.++++
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~--------v~~~~~-~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~ 79 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGT--------VKGRKS-GRHATSDWMEMEKQRGISVTSSVMQFPYRDC 79 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccce--------eecccc-CccccCCCcHHHHhhCCceeeeeEEEEECCE
Confidence 4679999999999999999999987776643210 001100 0112367889999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch-h
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK-D 497 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~-e 497 (768)
.++|||||||.+|...+..++..+|++|+|||+..++ ..|++.++..+...++| +|+++||||+...+. +
T Consensus 80 ~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv--------~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~~ 150 (526)
T PRK00741 80 LINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV--------EPQTRKLMEVCRLRDTP-IFTFINKLDRDGREPLE 150 (526)
T ss_pred EEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCC--------CHHHHHHHHHHHhcCCC-EEEEEECCcccccCHHH
Confidence 9999999999999999999999999999999999874 56889999999999999 899999999875332 1
Q ss_pred hHHHHHHHHhHH-----------------------------------------------------Hh-------------
Q 004202 498 RFDSIKVQLGTF-----------------------------------------------------LR------------- 511 (768)
Q Consensus 498 ~~~~i~~el~~~-----------------------------------------------------lk------------- 511 (768)
.+++++..+..- +.
T Consensus 151 ~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel 230 (526)
T PRK00741 151 LLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELEL 230 (526)
T ss_pred HHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHh
Confidence 122222221100 00
Q ss_pred ----------hcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhc-cCCCCCC---------CCCCcee
Q 004202 512 ----------SCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE---------FSKPLLM 571 (768)
Q Consensus 512 ----------~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~-l~~~~~~---------~~~plr~ 571 (768)
..-.....+|++..||+++.|+.. ||++|.. +|.|... .+.+|..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~---------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~ 295 (526)
T PRK00741 231 VQGASNEFDLEAFLAGELTPVFFGSALNNFGVQE---------------FLDAFVEWAPAPQPRQTDEREVEPTEEKFSG 295 (526)
T ss_pred hhhcccchhHHHHhcCCeEEEEEeecccCcCHHH---------------HHHHHHHHCCCCCcccccceeecCCCCceEE
Confidence 000001125677788888888854 9999854 4544211 1346777
Q ss_pred eeEeEEe---eC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee----cccccceeccCCceEEEecccccccc
Q 004202 572 PICDVLK---SQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRV 643 (768)
Q Consensus 572 ~I~dv~~---~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gi~~~~i 643 (768)
.|+++.. .+ .|.+ ++.||.||+|+.|++|+....++..+|..+.. ....+++|.|||+++|. +..++
T Consensus 296 ~VFK~~~~m~~~~~grl-afvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~ 370 (526)
T PRK00741 296 FVFKIQANMDPKHRDRI-AFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTI 370 (526)
T ss_pred EEEEEEecCCCCcCceE-EEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEE----CCCCC
Confidence 7777763 33 7888 89999999999999999888888888877654 35789999999999886 34568
Q ss_pred cCCcccccCC
Q 004202 644 MSGGVLCHPD 653 (768)
Q Consensus 644 ~rG~VL~~~~ 653 (768)
+.||+|+...
T Consensus 371 ~~GDTL~~~~ 380 (526)
T PRK00741 371 QIGDTFTQGE 380 (526)
T ss_pred ccCCCccCCC
Confidence 8999998754
No 52
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.2e-27 Score=259.98 Aligned_cols=240 Identities=24% Similarity=0.274 Sum_probs=193.5
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE
Q 004202 334 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 413 (768)
Q Consensus 334 ~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~ 413 (768)
+....+++.|.|+||+|||||||+.+|....... ....|||.+++...+
T Consensus 147 ~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-------------------------------~E~GGITQhIGAF~V 195 (683)
T KOG1145|consen 147 KLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAA-------------------------------GEAGGITQHIGAFTV 195 (683)
T ss_pred hhcCCCCCeEEEeecccCChhhHHHHHhhCceeh-------------------------------hhcCCccceeceEEE
Confidence 3445688999999999999999999998432111 112689999988776
Q ss_pred ee-CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004202 414 DS-KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 414 ~~-~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
.. +|..++|+|||||..|..+..+|+..+|.++|||.|.+|+ ++||.|.+..++..++| +||++||+|..
T Consensus 196 ~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGV--------mpQT~EaIkhAk~A~Vp-iVvAinKiDkp 266 (683)
T KOG1145|consen 196 TLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGV--------MPQTLEAIKHAKSANVP-IVVAINKIDKP 266 (683)
T ss_pred ecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCc--------cHhHHHHHHHHHhcCCC-EEEEEeccCCC
Confidence 54 6789999999999999999999999999999999999984 78999999999999999 99999999998
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh---hccCCCCCCCCCCc
Q 004202 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI---DSLRPPPREFSKPL 569 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L---~~l~~~~~~~~~pl 569 (768)
+.+.++...-.....-.+..+| ..+++||+||++|+|+.. |.+++ ..+..-+.+...|+
T Consensus 267 ~a~pekv~~eL~~~gi~~E~~G---GdVQvipiSAl~g~nl~~---------------L~eaill~Ae~mdLkA~p~g~~ 328 (683)
T KOG1145|consen 267 GANPEKVKRELLSQGIVVEDLG---GDVQVIPISALTGENLDL---------------LEEAILLLAEVMDLKADPKGPA 328 (683)
T ss_pred CCCHHHHHHHHHHcCccHHHcC---CceeEEEeecccCCChHH---------------HHHHHHHHHHHhhcccCCCCCc
Confidence 7766653222222223345555 568999999999999965 55554 22233334467888
Q ss_pred eeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec-ccccceeccCCceEEE
Q 004202 570 LMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVS 634 (768)
Q Consensus 570 r~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~ 634 (768)
.-.|-+..-.+ +|.+ ++-.|..|+|++|+.++.+ ...++|+.+.-+ ..++++|.|++.|.+.
T Consensus 329 eg~VIES~vdkg~G~~-aT~iVkrGTLkKG~vlV~G--~~w~KVr~l~D~nGk~i~~A~Ps~pv~V~ 392 (683)
T KOG1145|consen 329 EGWVIESSVDKGRGPV-ATVIVKRGTLKKGSVLVAG--KSWCKVRALFDHNGKPIDEATPSQPVEVL 392 (683)
T ss_pred eEEEEEeeecCCccce-eEEEEeccccccccEEEEe--chhhhhhhhhhcCCCCccccCCCCceEee
Confidence 88888888888 9999 8999999999999999887 558899999865 7899999999999774
No 53
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.95 E-value=1.2e-26 Score=270.19 Aligned_cols=245 Identities=22% Similarity=0.310 Sum_probs=182.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
.+++.|+++||+|||||||+++|.+.... .....|+|.+.+...+...
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~-------------------------------~~~~g~itq~ig~~~~~~~~ 52 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVA-------------------------------AKEAGGITQHIGATEVPIDV 52 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc-------------------------------cCCCCceEEeeceeeccccc
Confidence 46789999999999999999999742110 0111334444433322211
Q ss_pred -----------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCC
Q 004202 417 -----------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 479 (768)
Q Consensus 417 -----------------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgi 479 (768)
-..++|||||||++|...+.+++..+|++|||||++.|. +.|+.+++.++...++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~--------~~qt~e~i~~~~~~~v 124 (586)
T PRK04004 53 IEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGF--------QPQTIEAINILKRRKT 124 (586)
T ss_pred cccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCC--------CHhHHHHHHHHHHcCC
Confidence 012799999999999999999999999999999999873 5799999999999999
Q ss_pred CeEEEEEeccccc-ccc------------------hhhHHHHHHHHhHHHhhcCCCC----------CCCcEEEeecccC
Q 004202 480 DQLIVAVNKMDAV-QYS------------------KDRFDSIKVQLGTFLRSCGFKD----------ASLTWIPLSALEN 530 (768)
Q Consensus 480 p~iIVVvNKmDlv-~~s------------------~e~~~~i~~el~~~lk~~g~~~----------~~i~~IpVSA~tG 530 (768)
| +|+|+||+|+. .|. .+.|++...++...|...|+.. ..++++|+||++|
T Consensus 125 p-iIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG 203 (586)
T PRK04004 125 P-FVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG 203 (586)
T ss_pred C-EEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC
Confidence 9 89999999985 343 2344455555666666666643 3578999999999
Q ss_pred CCcccCCCCcccccccCCcchhhhhh----c-cCC-CCCCCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEE
Q 004202 531 QNLVTAPDDGRLLSWYKGPCLLDAID----S-LRP-PPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLV 603 (768)
Q Consensus 531 ~gI~e~~~~~~~~~wy~G~~LLe~L~----~-l~~-~~~~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i 603 (768)
+|+.+ |++.+. . ++. -..+.+.|++++|.+++..+ .|++ ++|+|.+|+|++||.|.+
T Consensus 204 eGi~d---------------Ll~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v-~~~~v~~GtL~~Gd~vv~ 267 (586)
T PRK04004 204 EGIPD---------------LLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTT-IDVILYDGTLRKGDTIVV 267 (586)
T ss_pred CChHH---------------HHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceE-EEEEEEcCEEECCCEEEE
Confidence 99976 444442 1 221 23445789999999999998 9998 899999999999999999
Q ss_pred ccCCe--eeEEEeeeec------------ccccceeccCCceEEEeccc
Q 004202 604 LPSGE--VGTVHSIERD------------SQSCSVARAGDNIAVSLQGI 638 (768)
Q Consensus 604 ~P~~~--~~~VksI~~~------------~~~v~~A~aGd~V~l~L~gi 638 (768)
+|.+. .++|++|..+ ...++.|.|..-|.+...|+
T Consensus 268 ~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl 316 (586)
T PRK04004 268 GGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDL 316 (586)
T ss_pred CcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCc
Confidence 99874 5799999975 24566777777666543344
No 54
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.9e-27 Score=276.83 Aligned_cols=271 Identities=30% Similarity=0.412 Sum_probs=208.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
....||+|+||+|||||||+.+|++..|.+.... ....| +..+|..+.|++||+|+..+...+.|++
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G---------~v~~g----~~~~D~~e~EqeRGITI~saa~s~~~~~ 74 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIG---------EVHDG----AATMDWMEQEQERGITITSAATTLFWKG 74 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCc---------cccCC----CccCCCcHHHHhcCCEEeeeeeEEEEcC
Confidence 4578999999999999999999999988876411 01111 3468999999999999999999999996
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
+.|+|||||||.||..+..+.++.+|+||+||||..|+ +.||+..++++...++| .|+++||||+...+
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV--------~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~- 144 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGV--------EPQTETVWRQADKYGVP-RILFVNKMDRLGAD- 144 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCe--------eecHHHHHHHHhhcCCC-eEEEEECccccccC-
Confidence 99999999999999999999999999999999999985 78999999999999999 58899999998632
Q ss_pred hhHHHHHHHHhHHHhhc----CC----------------------C----------------------------------
Q 004202 497 DRFDSIKVQLGTFLRSC----GF----------------------K---------------------------------- 516 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~----g~----------------------~---------------------------------- 516 (768)
|..+.+++...|... .. .
T Consensus 145 --~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de 222 (697)
T COG0480 145 --FYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDE 222 (697)
T ss_pred --hhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCH
Confidence 223333333333210 00 0
Q ss_pred ---------------------------CCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCC------
Q 004202 517 ---------------------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPP------ 562 (768)
Q Consensus 517 ---------------------------~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~------ 562 (768)
...++++.-||..+.|+ ..||+++ +.+|.|.
T Consensus 223 ~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv---------------~~lLdav~~~lPsP~e~~~~~ 287 (697)
T COG0480 223 ELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGV---------------QPLLDAVVDYLPSPLDVPPIK 287 (697)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcH---------------HHHHHHHHHHCCChhhccccc
Confidence 00112222222222222 3488887 5566551
Q ss_pred --------------CCCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec----ccccc
Q 004202 563 --------------REFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCS 623 (768)
Q Consensus 563 --------------~~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~ 623 (768)
.+.+.|+.+.+.++...+ .|.+ .++||.||+|+.|+.|+....++..+|..|... ..+++
T Consensus 288 g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l-~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~ 366 (697)
T COG0480 288 GDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKL-TFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVD 366 (697)
T ss_pred ccCCccccchhcccCCCCCceEEEEEEeEecCCCCeE-EEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecc
Confidence 123689999999999988 8988 679999999999999998888777888887753 56899
Q ss_pred eeccCCceEEEecccccccccCCcccccCC
Q 004202 624 VARAGDNIAVSLQGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 624 ~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~ 653 (768)
++.||+++++. |++. ...|++||+.+
T Consensus 367 ~~~AG~I~a~~--Gl~~--~~tGdTl~~~~ 392 (697)
T COG0480 367 EVPAGDIVALV--GLKD--ATTGDTLCDEN 392 (697)
T ss_pred cccCccEEEEE--cccc--cccCCeeecCC
Confidence 99999999887 6643 47899999876
No 55
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.95 E-value=1.6e-26 Score=265.96 Aligned_cols=275 Identities=23% Similarity=0.308 Sum_probs=205.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
.+..+|+|+||+|||||||+++|++..+.+..... ..+++....+ .+|..+.|+++|+|+......+++++
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~--------v~~~g~~~~t-~~D~~~~E~~rgisi~~~~~~~~~~~ 79 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGA--------VKGRGSQRHA-KSDWMEMEKQRGISITTSVMQFPYRD 79 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccce--------eccccccccc-cCCCCHHHHhcCCcEEEEEEEEeeCC
Confidence 35689999999999999999999987776643210 1112222222 47888999999999999999999999
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
+.++|||||||.+|...+..++..+|++|+|||+..++ ..++..++.++...++| +|+++||+|+...+.+
T Consensus 80 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv--------~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~~ 150 (527)
T TIGR00503 80 CLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV--------ETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDPL 150 (527)
T ss_pred eEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHhcCCC-EEEEEECccccCCCHH
Confidence 99999999999999999999999999999999999873 46888888888888998 8999999998653322
Q ss_pred hHHHHHHHHhHHHhhcC---------------------------------------------------------------
Q 004202 498 RFDSIKVQLGTFLRSCG--------------------------------------------------------------- 514 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g--------------------------------------------------------------- 514 (768)
++.+++...+....
T Consensus 151 ---~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 227 (527)
T TIGR00503 151 ---ELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRD 227 (527)
T ss_pred ---HHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHH
Confidence 22233332221100
Q ss_pred -----------------CCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhc-cCCCCCC---------CCC
Q 004202 515 -----------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPPRE---------FSK 567 (768)
Q Consensus 515 -----------------~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~-l~~~~~~---------~~~ 567 (768)
....-+|++..||+++.|+.. ||++|.. +|.|... .+.
T Consensus 228 ~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~---------------LLd~i~~~~PsP~~~~~~~~~~~~~~~ 292 (527)
T TIGR00503 228 ELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDH---------------FLDGLLQWAPKPEARQSDTRTVEPTEE 292 (527)
T ss_pred HHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHH---------------HHHHHHHHCCCCccccCCceecCCCCC
Confidence 001123455566666666643 8998844 4544321 135
Q ss_pred CceeeeEeEEe--e-C-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee----cccccceeccCCceEEEecccc
Q 004202 568 PLLMPICDVLK--S-Q-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGID 639 (768)
Q Consensus 568 plr~~I~dv~~--~-~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gi~ 639 (768)
+|...|+++.. . + .|.+ ++.||.||+|+.|++|+....++..+|..++. ...++++|.|||++++. +
T Consensus 293 ~~~~~VFK~~~~mdp~~~gri-af~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~ 367 (527)
T TIGR00503 293 KFSGFVFKIQANMDPKHRDRV-AFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLH----N 367 (527)
T ss_pred CeeEEEEEEEeccCcccCceE-EEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEE----C
Confidence 67777888865 4 4 7988 89999999999999999888888888887764 35789999999999886 3
Q ss_pred cccccCCcccccCC
Q 004202 640 VSRVMSGGVLCHPD 653 (768)
Q Consensus 640 ~~~i~rG~VL~~~~ 653 (768)
...++.||+|+...
T Consensus 368 ~~~~~~GDtl~~~~ 381 (527)
T TIGR00503 368 HGTIQIGDTFTQGE 381 (527)
T ss_pred CCCcccCCEecCCC
Confidence 45688999998743
No 56
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.95 E-value=3.3e-26 Score=265.61 Aligned_cols=253 Identities=25% Similarity=0.375 Sum_probs=179.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
+.+.|+++||+|||||||+++|++... ......|+|.+.+...+.+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v-------------------------------~~~e~ggiTq~iG~~~v~~~~~ 51 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV-------------------------------AKREAGGITQHIGATEIPMDVI 51 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc-------------------------------ccccCCceecccCeeEeeeccc
Confidence 567899999999999999999995311 01112345655444443321
Q ss_pred ----------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC
Q 004202 417 ----------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 480 (768)
Q Consensus 417 ----------------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip 480 (768)
...++|||||||+.|...+..++..+|++|||+|+++|. +.|+.+++.++...++|
T Consensus 52 ~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~--------~~qt~e~i~~l~~~~vp 123 (590)
T TIGR00491 52 EGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGF--------KPQTQEALNILRMYKTP 123 (590)
T ss_pred cccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCC--------CHhHHHHHHHHHHcCCC
Confidence 124899999999999999999999999999999999873 57999999999999998
Q ss_pred eEEEEEecccccc-cchh------------------hHHHHHHHHhHHHhhcCCCC----------CCCcEEEeecccCC
Q 004202 481 QLIVAVNKMDAVQ-YSKD------------------RFDSIKVQLGTFLRSCGFKD----------ASLTWIPLSALENQ 531 (768)
Q Consensus 481 ~iIVVvNKmDlv~-~s~e------------------~~~~i~~el~~~lk~~g~~~----------~~i~~IpVSA~tG~ 531 (768)
+|||+||+|+.. |... .+++....+...+...|+.. ..++++|+||++|+
T Consensus 124 -iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe 202 (590)
T TIGR00491 124 -FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE 202 (590)
T ss_pred -EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC
Confidence 899999999973 3110 01111111122234444432 35799999999999
Q ss_pred CcccCCCCcccccccCCcchhhhhhc-----cC-CCCCCCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEc
Q 004202 532 NLVTAPDDGRLLSWYKGPCLLDAIDS-----LR-PPPREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVL 604 (768)
Q Consensus 532 gI~e~~~~~~~~~wy~G~~LLe~L~~-----l~-~~~~~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~ 604 (768)
|+.+ |++.|.. ++ ..+.+.+.|++++|.+++..+ .|++ ++|+|.+|+|++||.|.++
T Consensus 203 Gide---------------Ll~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v-~t~~v~~G~l~~GD~iv~~ 266 (590)
T TIGR00491 203 GIPE---------------LLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMT-IDAVIYDGILRKGDTIAMA 266 (590)
T ss_pred ChhH---------------HHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceE-EEEEEEcCEEeCCCEEEEc
Confidence 9976 4444421 11 112345789999999999998 9999 8999999999999999999
Q ss_pred cCCe--eeEEEeeeecc------------cccceeccCCceEEEecccccccccCCccc
Q 004202 605 PSGE--VGTVHSIERDS------------QSCSVARAGDNIAVSLQGIDVSRVMSGGVL 649 (768)
Q Consensus 605 P~~~--~~~VksI~~~~------------~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL 649 (768)
|.+. .++||+|.... ..+.+|.|..-+-+...|++. ...|+.+
T Consensus 267 ~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~--~~aG~~~ 323 (590)
T TIGR00491 267 GSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD--VMAGSPI 323 (590)
T ss_pred cCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC--CCCCCEE
Confidence 9874 68999998653 355666666555555445432 2345544
No 57
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.8e-27 Score=245.86 Aligned_cols=344 Identities=24% Similarity=0.347 Sum_probs=267.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee---
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 415 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--- 415 (768)
..+||+.+||+-+||||++.++.+- .+-+++.|-+|.+|+.+++..-..
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv----------------------------~TvrFK~ELERNITIKLGYANAKIYkc 88 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGV----------------------------HTVRFKNELERNITIKLGYANAKIYKC 88 (466)
T ss_pred eeeeecceeccccCcceeeeeeccc----------------------------eEEEehhhhhcceeEEeccccceEEec
Confidence 5689999999999999999999842 123456677888999887753211
Q ss_pred C----------------------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccc
Q 004202 416 K----------------------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMN 461 (768)
Q Consensus 416 ~----------------------------------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~ 461 (768)
+ -+++.|+|+|||.-++.+|+.|++..|+++|+|.+++..
T Consensus 89 ~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC------ 162 (466)
T KOG0466|consen 89 DDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC------ 162 (466)
T ss_pred CCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC------
Confidence 0 056889999999999999999999999999999999865
Q ss_pred cchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcc
Q 004202 462 TAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGR 541 (768)
Q Consensus 462 ~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~ 541 (768)
.++||.||+.....|..++++++-||+|++. ++...+-.+++..|++...- ...|++|+||--+.||+-
T Consensus 163 -PQPQTsEHLaaveiM~LkhiiilQNKiDli~--e~~A~eq~e~I~kFi~~t~a--e~aPiiPisAQlkyNId~------ 231 (466)
T KOG0466|consen 163 -PQPQTSEHLAAVEIMKLKHIIILQNKIDLIK--ESQALEQHEQIQKFIQGTVA--EGAPIIPISAQLKYNIDV------ 231 (466)
T ss_pred -CCCchhhHHHHHHHhhhceEEEEechhhhhh--HHHHHHHHHHHHHHHhcccc--CCCceeeehhhhccChHH------
Confidence 5799999999999999999999999999996 44444556677777765543 346889999999999954
Q ss_pred cccccCCcchhhhh-hccCCCCCCCCCCceeeeEeEEeeC---------CCcEEEEEEEecCcccCCCEEEEccCCe---
Q 004202 542 LLSWYKGPCLLDAI-DSLRPPPREFSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPSGE--- 608 (768)
Q Consensus 542 ~~~wy~G~~LLe~L-~~l~~~~~~~~~plr~~I~dv~~~~---------~G~V~v~G~V~sG~L~~Gd~v~i~P~~~--- 608 (768)
+.++| ..+|.|.+++..|.+|.|-+.|.+. .|.| +.|.+..|.|++||.+.+.|.-.
T Consensus 232 ---------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgv-aggsil~Gvlkvg~~IEiRPGiv~kd 301 (466)
T KOG0466|consen 232 ---------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGV-AGGSILKGVLKVGQEIEIRPGIVTKD 301 (466)
T ss_pred ---------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCcc-ccchhhhhhhhcCcEEEecCceeeec
Confidence 88888 7789999999999999998888764 4677 89999999999999999999621
Q ss_pred ---e-------eEEEeeeecccccceeccCCceEEEeccccc----ccccCCcccccCCCCcceeeEEEEEEEeeCC---
Q 004202 609 ---V-------GTVHSIERDSQSCSVARAGDNIAVSLQGIDV----SRVMSGGVLCHPDFPVAIATHLELKVLVLDF--- 671 (768)
Q Consensus 609 ---~-------~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~----~~i~rG~VL~~~~~p~~~~~~F~a~i~vl~~--- 671 (768)
. .+|.++...+.+++.|.+|-.+++.-+ +|+ .+-..|.||...+..|....+++...++|..
T Consensus 302 ~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~-~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllg 380 (466)
T KOG0466|consen 302 ENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTK-MDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLG 380 (466)
T ss_pred CCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccc-cCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhc
Confidence 1 334555556778999999999998643 333 3344677887778878877788877766641
Q ss_pred -----------CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeeccccc
Q 004202 672 -----------APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNC 740 (768)
Q Consensus 672 -----------~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~~~~ 740 (768)
...+..|.-+.+.+|+....++|..+.. ..++|.|..|+|.+-.+..
T Consensus 381 vrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~----------------------d~~k~~Lt~P~CteigEki 438 (466)
T KOG0466|consen 381 VRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKA----------------------DMAKIQLTSPVCTEIGEKI 438 (466)
T ss_pred cccccccccchhhhcccCcEEEEEecccccCceEEEEec----------------------ceeeeEecCchhcccchhh
Confidence 2346677778888888888888876632 2567788899999877632
Q ss_pred CCcceEEEEeCCcEEEEEEEEe
Q 004202 741 RALGRAFLRSSGRTIAVGIVTR 762 (768)
Q Consensus 741 ~~lGRfILR~~g~TvgvG~V~~ 762 (768)
+++|.+=+ ..|.||+|.|..
T Consensus 439 -AlSRrvek-hWRLIGwg~I~~ 458 (466)
T KOG0466|consen 439 -ALSRRVEK-HWRLIGWGQIKA 458 (466)
T ss_pred -hhhhhhhh-heEEecceeEeC
Confidence 45554433 568999999863
No 58
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.5e-26 Score=254.80 Aligned_cols=233 Identities=25% Similarity=0.354 Sum_probs=184.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
.+++.|+++||+|||||||+..|....- ...-..|+|.+++...+.++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~V-------------------------------a~~EaGGITQhIGA~~v~~~~ 51 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNV-------------------------------AAGEAGGITQHIGAYQVPLDV 51 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcc-------------------------------ccccCCceeeEeeeEEEEecc
Confidence 3578899999999999999999983211 11123689999999999884
Q ss_pred --CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 417 --NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 417 --~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
...++|+|||||+.|..+..+|+..+|.+|||||+++| +++||.|-+.+++..++| +||++||||+.+.
T Consensus 52 ~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG--------v~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~ 122 (509)
T COG0532 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG--------VMPQTIEAINHAKAAGVP-IVVAINKIDKPEA 122 (509)
T ss_pred CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC--------cchhHHHHHHHHHHCCCC-EEEEEecccCCCC
Confidence 47999999999999999999999999999999999998 489999999999999999 9999999999965
Q ss_pred chhhHHHHHHHHhHH---HhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhh---ccCCCCCCCCCC
Q 004202 495 SKDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID---SLRPPPREFSKP 568 (768)
Q Consensus 495 s~e~~~~i~~el~~~---lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~---~l~~~~~~~~~p 568 (768)
+.++ +..++.+. ...|+ ..+.|+|+||++|+|+.+ ||+.|. +...-+...+.+
T Consensus 123 np~~---v~~el~~~gl~~E~~g---g~v~~VpvSA~tg~Gi~e---------------LL~~ill~aev~elka~~~~~ 181 (509)
T COG0532 123 NPDK---VKQELQEYGLVPEEWG---GDVIFVPVSAKTGEGIDE---------------LLELILLLAEVLELKANPEGP 181 (509)
T ss_pred CHHH---HHHHHHHcCCCHhhcC---CceEEEEeeccCCCCHHH---------------HHHHHHHHHHHHhhhcCCCCc
Confidence 4444 33444332 22233 347899999999999976 777662 223334455678
Q ss_pred ceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec-ccccceeccCCceEEE
Q 004202 569 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVS 634 (768)
Q Consensus 569 lr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~ 634 (768)
.+-.|.++...+ .|.+ ++-.|..|+|++||.|.++. ...+|+.+... ..++..|.++..+.+.
T Consensus 182 a~gtviE~~~dkG~G~v-atviv~~GtL~~GD~iv~g~--~~g~I~t~v~~~~~~i~~a~ps~~v~i~ 246 (509)
T COG0532 182 ARGTVIEVKLDKGLGPV-ATVIVQDGTLKKGDIIVAGG--EYGRVRTMVDDLGKPIKEAGPSKPVEIL 246 (509)
T ss_pred ceEEEEEEEeccCCCce-EEEEEecCeEecCCEEEEcc--CCCceEEeehhcCCCccccCCCCCeEEe
Confidence 888888888888 9998 89999999999999999984 46677777764 5677777777665543
No 59
>PRK13351 elongation factor G; Reviewed
Probab=99.94 E-value=4.9e-26 Score=271.42 Aligned_cols=270 Identities=29% Similarity=0.411 Sum_probs=207.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...||+|+||+|+|||||+++|++..+.+.... ....+ .+.+|..+.|+++|+|+......+.+.+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~---------~v~~~----~~~~d~~~~e~~r~~ti~~~~~~~~~~~~ 73 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMG---------EVEDG----TTVTDWMPQEQERGITIESAATSCDWDNH 73 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccc---------cccCC----cccCCCCHHHHhcCCCcccceEEEEECCE
Confidence 457999999999999999999998766654321 00111 24578888999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.++|||||||.+|...+..++..+|++|+|+|++.+. ..++.+++..+...++| +++|+||+|+...+
T Consensus 74 ~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~--------~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~--- 141 (687)
T PRK13351 74 RINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGV--------QPQTETVWRQADRYGIP-RLIFINKMDRVGAD--- 141 (687)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHhcCCC-EEEEEECCCCCCCC---
Confidence 9999999999999999999999999999999999873 46788888888889999 78999999988532
Q ss_pred HHHHHHHHhHHHhhc-----------------------------------------------------------------
Q 004202 499 FDSIKVQLGTFLRSC----------------------------------------------------------------- 513 (768)
Q Consensus 499 ~~~i~~el~~~lk~~----------------------------------------------------------------- 513 (768)
+..+.+++...+...
T Consensus 142 ~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d 221 (687)
T PRK13351 142 LFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFD 221 (687)
T ss_pred HHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 222333333222110
Q ss_pred ---------C--C--------------CCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCC----
Q 004202 514 ---------G--F--------------KDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR---- 563 (768)
Q Consensus 514 ---------g--~--------------~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~---- 563 (768)
+ + ...-+|++..||++|.|+.. ||++| ..+|.|..
T Consensus 222 ~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~---------------LLd~I~~~lPsP~~~~~~ 286 (687)
T PRK13351 222 DELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEP---------------LLDAVVDYLPSPLEVPPP 286 (687)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHH---------------HHHHHHHHCCChhhcccc
Confidence 0 0 00123455668888888854 99988 44555531
Q ss_pred --------------CCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec----ccccce
Q 004202 564 --------------EFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSV 624 (768)
Q Consensus 564 --------------~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~ 624 (768)
+.+.|+.+.|.+++..+ .|.+ +++||.+|+|+.||+|++.+.+...+|..|... ..++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i-~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 365 (687)
T PRK13351 287 RGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKL-TYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDR 365 (687)
T ss_pred cccCCCCCceeecCCCCCCeEEEEEEeeecCCCceE-EEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCc
Confidence 23568999999999888 8988 899999999999999999988776777666543 578999
Q ss_pred eccCCceEEEecccccccccCCcccccCC
Q 004202 625 ARAGDNIAVSLQGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 625 A~aGd~V~l~L~gi~~~~i~rG~VL~~~~ 653 (768)
|.|||++++. |++ ++..|++|++..
T Consensus 366 ~~aGdI~~i~--gl~--~~~~gdtl~~~~ 390 (687)
T PRK13351 366 AKAGDIVAVA--GLK--ELETGDTLHDSA 390 (687)
T ss_pred cCCCCEEEEE--Ccc--cCccCCEEeCCC
Confidence 9999998775 653 456799998654
No 60
>PRK12740 elongation factor G; Reviewed
Probab=99.94 E-value=5.3e-26 Score=270.49 Aligned_cols=263 Identities=29% Similarity=0.398 Sum_probs=203.8
Q ss_pred EeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEEEEeC
Q 004202 346 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDS 425 (768)
Q Consensus 346 vG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~lIDT 425 (768)
+||+|+|||||+++|++..+.+.... . ...+ .+.+|....|+++|+|+......+.++++.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~--~-------~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIG--E-------VEDG----TTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCc--c-------ccCC----cccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 69999999999999998887765321 0 0011 257899999999999999999999999999999999
Q ss_pred CCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHH
Q 004202 426 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQ 505 (768)
Q Consensus 426 PGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~e 505 (768)
|||.+|...+..++..+|++|+|||++.+. ..++..++..+...++| +++|+||+|+.... +..+.++
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~~--------~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~---~~~~~~~ 135 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGGV--------EPQTETVWRQAEKYGVP-RIIFVNKMDRAGAD---FFRVLAQ 135 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCCc--------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---HHHHHHH
Confidence 999999999999999999999999999873 46788888888889998 78899999987532 2223333
Q ss_pred HhHHHhhc------------------------------------------------------------------------
Q 004202 506 LGTFLRSC------------------------------------------------------------------------ 513 (768)
Q Consensus 506 l~~~lk~~------------------------------------------------------------------------ 513 (768)
+...+...
T Consensus 136 l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~ 215 (668)
T PRK12740 136 LQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEG 215 (668)
T ss_pred HHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC
Confidence 33221100
Q ss_pred -C--------------CCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhh-ccCCCC---------------
Q 004202 514 -G--------------FKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID-SLRPPP--------------- 562 (768)
Q Consensus 514 -g--------------~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~-~l~~~~--------------- 562 (768)
. ....-+|++..||++|.|+.. ||++|. .+|.|.
T Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~---------------LLd~i~~~lPsp~~~~~~~~~~~~~~~~ 280 (668)
T PRK12740 216 EELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQR---------------LLDAVVDYLPSPLEVPPVDGEDGEEGAE 280 (668)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHH---------------HHHHHHHHCCChhhcccccCCCCccccc
Confidence 0 001124567779999999854 889884 455553
Q ss_pred --CCCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee----cccccceeccCCceEEEe
Q 004202 563 --REFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSL 635 (768)
Q Consensus 563 --~~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L 635 (768)
.+.+.|+.+.|++++..+ .|.+ +++||.+|+|++||+|++.+.+...+|..|.. ...++++|.|||++++.
T Consensus 281 ~~~~~~~~l~a~v~k~~~~~~~G~i-~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~- 358 (668)
T PRK12740 281 LAPDPDGPLVALVFKTMDDPFVGKL-SLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA- 358 (668)
T ss_pred cccCCCCCeEEEEEEeeecCCCCcE-EEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe-
Confidence 133568999999999888 7988 89999999999999999998776666555543 46799999999999987
Q ss_pred cccccccccCCcccccCC
Q 004202 636 QGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 636 ~gi~~~~i~rG~VL~~~~ 653 (768)
|++ .++.|++|++..
T Consensus 359 -gl~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 359 -KLK--DAATGDTLCDKG 373 (668)
T ss_pred -ccC--ccCCCCEEeCCC
Confidence 654 588999998644
No 61
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.94 E-value=2.2e-26 Score=274.89 Aligned_cols=286 Identities=26% Similarity=0.383 Sum_probs=204.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEE----Ee
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY----FD 414 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~----~~ 414 (768)
...||+|+||+|+|||||+++|++..+.+... ..|. .+.+|..++|+++|+|+...... ++
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~----------~~~~-----~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~ 82 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE----------LAGQ-----QLYLDFDEQEQERGITINAANVSMVHEYE 82 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchh----------cCCc-----eeecCCCHHHHhhcchhhcccceeEEeec
Confidence 45899999999999999999999888776542 1111 24678889999999999876544 56
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
+.+++++|||||||.+|...+..++..+|++|+|||+..|+ ..++.+++..+...++| +|+|+||||+...
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~--------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~ 153 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGV--------MPQTETVLRQALKENVK-PVLFINKVDRLIN 153 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCC--------CccHHHHHHHHHHcCCC-EEEEEEChhcccc
Confidence 78899999999999999999999999999999999999874 56889999888888998 5799999998642
Q ss_pred --------chhhHHHHHHHHhHHHhhcC---------CCCCCCcEEEeecccCCCcccC------CC------------C
Q 004202 495 --------SKDRFDSIKVQLGTFLRSCG---------FKDASLTWIPLSALENQNLVTA------PD------------D 539 (768)
Q Consensus 495 --------s~e~~~~i~~el~~~lk~~g---------~~~~~i~~IpVSA~tG~gI~e~------~~------------~ 539 (768)
..++|..+...+...++... +..........|++.+++..-+ .+ .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 233 (720)
T TIGR00490 154 ELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQ 233 (720)
T ss_pred hhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccH
Confidence 12334444444444443210 0000111223344444222000 00 0
Q ss_pred cccccccC-Ccchhhhh-hccCCCCC-------------------------CCCCCceeeeEeEEeeC-CCcEEEEEEEe
Q 004202 540 GRLLSWYK-GPCLLDAI-DSLRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQVSACGKLE 591 (768)
Q Consensus 540 ~~~~~wy~-G~~LLe~L-~~l~~~~~-------------------------~~~~plr~~I~dv~~~~-~G~V~v~G~V~ 591 (768)
..+..|+- -..||++| ..+|.|.. +.+.|+...|.+++..+ .|.+ ++|||.
T Consensus 234 ~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~i-a~~RV~ 312 (720)
T TIGR00490 234 KELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEV-AVGRLY 312 (720)
T ss_pred HHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEE-EEEEEE
Confidence 00001211 12467777 34454421 12457888899998777 8988 899999
Q ss_pred cCcccCCCEEEEccCCeeeEEEeeeec----ccccceeccCCceEEEecccccccccCCcccccCC
Q 004202 592 AGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHPD 653 (768)
Q Consensus 592 sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~~ 653 (768)
+|+|++||.|++.+.+...+|..|... ..+++.|.||++|+|. |++ ++.+||+|++++
T Consensus 313 sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~--gl~--~~~~GdtL~~~~ 374 (720)
T TIGR00490 313 SGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVI--GLK--DAVAGETICTTV 374 (720)
T ss_pred eCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEE--Ccc--ccccCceeecCC
Confidence 999999999999999988999998764 4689999999999885 553 567899998755
No 62
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.93 E-value=1.5e-24 Score=262.75 Aligned_cols=288 Identities=23% Similarity=0.362 Sum_probs=199.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
...||+|+||+|||||||+++|++..+.+.... .| .++.+|...+|+++|+|+..+...+.+.
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 82 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRADEAERGITIKSTGISLYYEMT 82 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeeccCcHHHHHhCCceecceeEEEeecc
Confidence 567999999999999999999999888765431 11 2456899999999999999877666553
Q ss_pred --------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeE
Q 004202 417 --------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 482 (768)
Q Consensus 417 --------------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~i 482 (768)
++.++|||||||.+|..++..+++.+|++|+||||..|+ ..||+.++..+...++| +
T Consensus 83 ~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv--------~~~t~~~~~~~~~~~~p-~ 153 (843)
T PLN00116 83 DESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV--------CVQTETVLRQALGERIR-P 153 (843)
T ss_pred cccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCC--------cccHHHHHHHHHHCCCC-E
Confidence 678999999999999999999999999999999999984 67999999999999999 7
Q ss_pred EEEEeccccccc----c----hhhHHHHHHHHhHHHhhcC--------CCCCCCcEEEeecccCCCcc------------
Q 004202 483 IVAVNKMDAVQY----S----KDRFDSIKVQLGTFLRSCG--------FKDASLTWIPLSALENQNLV------------ 534 (768)
Q Consensus 483 IVVvNKmDlv~~----s----~e~~~~i~~el~~~lk~~g--------~~~~~i~~IpVSA~tG~gI~------------ 534 (768)
||++||||+... + ...++.+.++++.++..++ +.+..-.+++.|++.|..+.
T Consensus 154 i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~ 233 (843)
T PLN00116 154 VLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKF 233 (843)
T ss_pred EEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHh
Confidence 899999998721 1 1456667777763333221 10111112222332210000
Q ss_pred ------------------------------cCC---------------------------------C-------------
Q 004202 535 ------------------------------TAP---------------------------------D------------- 538 (768)
Q Consensus 535 ------------------------------e~~---------------------------------~------------- 538 (768)
... .
T Consensus 234 ~~~~~~l~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~ 313 (843)
T PLN00116 234 GVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELM 313 (843)
T ss_pred CCcHHHHHHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhh
Confidence 000 0
Q ss_pred -----CcccccccCC-cchhhhh-hccCCCCC-------------------------CCCCCceeeeEeEEeeC-CCcEE
Q 004202 539 -----DGRLLSWYKG-PCLLDAI-DSLRPPPR-------------------------EFSKPLLMPICDVLKSQ-HGQVS 585 (768)
Q Consensus 539 -----~~~~~~wy~G-~~LLe~L-~~l~~~~~-------------------------~~~~plr~~I~dv~~~~-~G~V~ 585 (768)
...+.+||-| ..||++| ..+|.|.. +.+.|+...|++++..+ .|...
T Consensus 314 ~~~l~~~~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l 393 (843)
T PLN00116 314 GKALMKRVMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFF 393 (843)
T ss_pred hHHHHHHHHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEE
Confidence 0012456655 4577877 44555420 11347888888887666 67734
Q ss_pred EEEEEecCcccCCCEEEEccCC----ee-----eEEEeeee----cccccceeccCCceEEEecccccccccCCcccccC
Q 004202 586 ACGKLEAGALRSGLKVLVLPSG----EV-----GTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLCHP 652 (768)
Q Consensus 586 v~G~V~sG~L~~Gd~v~i~P~~----~~-----~~VksI~~----~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~~~ 652 (768)
+++||.+|+|+.||.|++...+ .. .+|..|.. ...++++|.||++++|. |++. .+..|++|++.
T Consensus 394 ~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~--gl~~-~~~~gdTL~~~ 470 (843)
T PLN00116 394 AFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV--GLDQ-FITKNATLTNE 470 (843)
T ss_pred EEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE--eecc-cccCCceecCC
Confidence 8999999999999999754322 11 24444443 24689999999999886 5432 24458888765
Q ss_pred C
Q 004202 653 D 653 (768)
Q Consensus 653 ~ 653 (768)
.
T Consensus 471 ~ 471 (843)
T PLN00116 471 K 471 (843)
T ss_pred c
Confidence 4
No 63
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=9.3e-25 Score=235.88 Aligned_cols=275 Identities=26% Similarity=0.359 Sum_probs=198.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
....|||-|+|||||||...|+...+.|....-- .++++-.++ ..|....|++|||++..+...|++.++.
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~V--------k~rk~~~~a-~SDWM~iEkqRGISVtsSVMqF~Y~~~~ 82 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRKSGKHA-KSDWMEIEKQRGISVTSSVMQFDYADCL 82 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhccee--------eeccCCccc-ccHHHHHHHhcCceEEeeEEEeccCCeE
Confidence 4679999999999999999999877777544311 122222111 2466789999999999999999999999
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch-hh
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK-DR 498 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~-e~ 498 (768)
++|+|||||++|...+.+.+..+|.||.||||..|+ .+||+..+..|+..++| ||-+|||||+...++ +.
T Consensus 83 iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi--------E~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~EL 153 (528)
T COG4108 83 VNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI--------EPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLEL 153 (528)
T ss_pred EeccCCCCccccchhHHHHHHhhheeeEEEecccCc--------cHHHHHHHHHHhhcCCc-eEEEeeccccccCChHHH
Confidence 999999999999999999999999999999999984 68999999999999999 899999999876433 44
Q ss_pred HHHHHHHHhHHHhhcCCC--------------------------------------------------------------
Q 004202 499 FDSIKVQLGTFLRSCGFK-------------------------------------------------------------- 516 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~-------------------------------------------------------------- 516 (768)
++++.+.|.-....+.|.
T Consensus 154 LdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~ 233 (528)
T COG4108 154 LDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELV 233 (528)
T ss_pred HHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHH
Confidence 444444433221111000
Q ss_pred --------------CCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCCCCCC----------CCCceee
Q 004202 517 --------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPPPREF----------SKPLLMP 572 (768)
Q Consensus 517 --------------~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~~~~~----------~~plr~~ 572 (768)
....|++.-||+++-|+. .||+.|-.+.+++... +..|.-.
T Consensus 234 ~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~---------------~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGF 298 (528)
T COG4108 234 QGAGNEFDLEAFLAGELTPVFFGSALGNFGVD---------------HFLDALVDWAPSPRARQADTREVEPTEDKFSGF 298 (528)
T ss_pred HhhccccCHHHHhcCCccceEehhhhhccCHH---------------HHHHHHHhhCCCCCcccCCcCcccCCCCccceE
Confidence 011233333444444432 3788775554333211 1223222
Q ss_pred eEeE---EeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee----cccccceeccCCceEEEeccccccccc
Q 004202 573 ICDV---LKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVM 644 (768)
Q Consensus 573 I~dv---~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gi~~~~i~ 644 (768)
|+++ ...+ +.++ ++-||.||.+..|+++.....|+.+++..-+. .++.++.|+|||+|+|. +.-.++
T Consensus 299 VFKIQANMDp~HRDRI-AFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~----nhG~~~ 373 (528)
T COG4108 299 VFKIQANMDPKHRDRI-AFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLH----NHGTIQ 373 (528)
T ss_pred EEEEEcCCCcccccce-eEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEecc----CCCcee
Confidence 3222 2223 5677 89999999999999999999999888877664 46789999999999987 344578
Q ss_pred CCcccccC
Q 004202 645 SGGVLCHP 652 (768)
Q Consensus 645 rG~VL~~~ 652 (768)
.||+++..
T Consensus 374 IGDT~t~G 381 (528)
T COG4108 374 IGDTFTEG 381 (528)
T ss_pred ecceeecC
Confidence 89999864
No 64
>PTZ00416 elongation factor 2; Provisional
Probab=99.92 E-value=6.9e-24 Score=256.58 Aligned_cols=149 Identities=28% Similarity=0.401 Sum_probs=123.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
...||+|+||+|||||||+++|++..+.+.... .|+ ++.+|..++|+++|+|++.+...+.+.
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiti~~~~~~~~~~~~ 82 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKN----------AGD-----ARFTDTRADEQERGITIKSTGISLYYEHD 82 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCccccc----------CCc-----eeecccchhhHhhcceeeccceEEEeecc
Confidence 457999999999999999999999887765421 121 356899999999999999876666654
Q ss_pred --------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec
Q 004202 417 --------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 488 (768)
Q Consensus 417 --------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK 488 (768)
++.++|+|||||.+|..++..++..+|++|+||||..|+ ..|++.++..+...++| +|+++||
T Consensus 83 ~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~--------~~~t~~~~~~~~~~~~p-~iv~iNK 153 (836)
T PTZ00416 83 LEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGV--------CVQTETVLRQALQERIR-PVLFINK 153 (836)
T ss_pred cccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCc--------CccHHHHHHHHHHcCCC-EEEEEEC
Confidence 678999999999999999999999999999999999984 67999999999999998 7899999
Q ss_pred cccc----ccc----hhhHHHHHHHHhHHHh
Q 004202 489 MDAV----QYS----KDRFDSIKVQLGTFLR 511 (768)
Q Consensus 489 mDlv----~~s----~e~~~~i~~el~~~lk 511 (768)
||+. ..+ ...+..+.+++...+.
T Consensus 154 ~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 154 VDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred hhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9997 211 1446667777776665
No 65
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.3e-24 Score=242.00 Aligned_cols=271 Identities=30% Similarity=0.445 Sum_probs=210.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...+|+|+-|.+||||||..++++..+.+..-. ...++ ...||..+.||++|||+..+..++.|.++
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~--------ev~~~-----~a~md~m~~er~rgITiqSAAt~~~w~~~ 104 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIG--------EVRGG-----GATMDSMELERQRGITIQSAATYFTWRDY 104 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeecc--------ccccC-----ceeeehHHHHHhcCceeeeceeeeeeccc
Confidence 567999999999999999999998877653221 01122 34688999999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
+++|||||||.+|..+..++++..|.+|+|+||..|+ +.||....+.++..++| .|..+||||+...+..+
T Consensus 105 ~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV--------qsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~~ 175 (721)
T KOG0465|consen 105 RINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV--------ESQTETVWRQMKRYNVP-RICFINKMDRMGASPFR 175 (721)
T ss_pred eeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce--------ehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChHH
Confidence 9999999999999999999999999999999999884 78999999999999999 57899999987632211
Q ss_pred H-HHHH--------------------------------------------------------------------------
Q 004202 499 F-DSIK-------------------------------------------------------------------------- 503 (768)
Q Consensus 499 ~-~~i~-------------------------------------------------------------------------- 503 (768)
. +.+.
T Consensus 176 ~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~ 255 (721)
T KOG0465|consen 176 TLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLA 255 (721)
T ss_pred HHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 0 0000
Q ss_pred -----------HHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh-hccCCCCC--------
Q 004202 504 -----------VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI-DSLRPPPR-------- 563 (768)
Q Consensus 504 -----------~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L-~~l~~~~~-------- 563 (768)
+++...++..-+....+|++.-||+.+.|+. +||+++ +.||.|..
T Consensus 256 e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQ---------------PlLDAVvdYLPsP~Ev~n~a~~k 320 (721)
T KOG0465|consen 256 EMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQ---------------PLLDAVVDYLPSPSEVENYALNK 320 (721)
T ss_pred HHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcc---------------hHHHHHHHhCCChhhhccccccc
Confidence 1111122222233345677778999999984 488887 56665410
Q ss_pred ------------CCC-CCceeeeEeEEeeCCCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec----ccccceec
Q 004202 564 ------------EFS-KPLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVAR 626 (768)
Q Consensus 564 ------------~~~-~plr~~I~dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~ 626 (768)
..+ .||....+++.....|+. .+-||.+|+|+.||.|+-...+++++|..+-+. .++++++.
T Consensus 321 e~~~~ekv~l~~~~d~~Pfv~LAFKle~g~fGqL-TyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~ 399 (721)
T KOG0465|consen 321 ETNSKEKVTLSPSRDKDPFVALAFKLEEGRFGQL-TYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVL 399 (721)
T ss_pred CCCCccceEeccCCCCCceeeeEEEeeecCccce-EEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhh
Confidence 012 277766666666568988 789999999999999999999999888776653 47899999
Q ss_pred cCCceEEEecccccccccCCcccccC
Q 004202 627 AGDNIAVSLQGIDVSRVMSGGVLCHP 652 (768)
Q Consensus 627 aGd~V~l~L~gi~~~~i~rG~VL~~~ 652 (768)
|||++++. |+ +...||++.+.
T Consensus 400 AG~I~alf--Gi---dcasGDTftd~ 420 (721)
T KOG0465|consen 400 AGDICALF--GI---DCASGDTFTDK 420 (721)
T ss_pred ccceeeee--cc---ccccCceeccC
Confidence 99999886 87 45679999987
No 66
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.90 E-value=2.8e-23 Score=214.84 Aligned_cols=190 Identities=28% Similarity=0.370 Sum_probs=145.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC----
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 416 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~---- 416 (768)
.||+++||+++|||||+++|++..+.+.... .+. ++.+|...+|++||+|+..+...+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~------------~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL------------AGK---ARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc------------CCc---eeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 3899999999999999999998877665432 111 357899999999999998876544443
Q ss_pred ------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 417 ------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 417 ------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
++.++|||||||.+|..++..++..+|++|+|||+..|. ..|+++++..+...++| +|+|+||||
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~--------~~~t~~~l~~~~~~~~p-~ilviNKiD 136 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGV--------CVQTETVLRQALKERVK-PVLVINKID 136 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECCC
Confidence 788999999999999999999999999999999999884 57999999999888998 899999999
Q ss_pred cc--------ccchhhHHHHHHHHhHHHhhcCCC-------------CCCCcEEEeecccCCCcccCCCCcccccccCCc
Q 004202 491 AV--------QYSKDRFDSIKVQLGTFLRSCGFK-------------DASLTWIPLSALENQNLVTAPDDGRLLSWYKGP 549 (768)
Q Consensus 491 lv--------~~s~e~~~~i~~el~~~lk~~g~~-------------~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~ 549 (768)
+. .+...++.++.+++..+++...-. +..-.++..||+.|+...- . +|-.-.
T Consensus 137 ~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~-~------~f~~~~ 209 (222)
T cd01885 137 RLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTI-I------KFARIY 209 (222)
T ss_pred cchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEecc-c------cccchH
Confidence 86 133466788888888888766311 1111267789999988732 1 121223
Q ss_pred chhhhh-hccCCC
Q 004202 550 CLLDAI-DSLRPP 561 (768)
Q Consensus 550 ~LLe~L-~~l~~~ 561 (768)
+|++.+ +.+|+|
T Consensus 210 ~~~~~~~~~~~~p 222 (222)
T cd01885 210 AVLEMVVKHLPSP 222 (222)
T ss_pred HHHHHHHhhCCCC
Confidence 577776 555543
No 67
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=9.1e-23 Score=208.15 Aligned_cols=168 Identities=32% Similarity=0.416 Sum_probs=131.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC----
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 416 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~---- 416 (768)
++|+++||+|+|||||+.+|+. ..+|....|.++|+|+..++..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~----------------------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG----------------------------VWTVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC----------------------------CCCCCCCeeEEcCCceeecccccccccccC
Confidence 4899999999999999999972 12456677888888888877665543
Q ss_pred -----------------------C------eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhh
Q 004202 417 -----------------------N------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLT 467 (768)
Q Consensus 417 -----------------------~------~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt 467 (768)
+ +.++|||||||++|...++.++..+|++|+|||+..+. ...++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~-------~~~~t 125 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPC-------PQPQT 125 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCC-------CCcch
Confidence 3 78999999999999999999999999999999999742 23578
Q ss_pred HHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccC
Q 004202 468 REHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYK 547 (768)
Q Consensus 468 ~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~ 547 (768)
.+++..+...+++++|||+||+|+.+ ...+....+++..+++.... ..++++++||++|+|+.+
T Consensus 126 ~~~l~~~~~~~~~~iiivvNK~Dl~~--~~~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g~gi~~------------ 189 (203)
T cd01888 126 SEHLAALEIMGLKHIIIVQNKIDLVK--EEQALENYEQIKKFVKGTIA--ENAPIIPISAQLKYNIDV------------ 189 (203)
T ss_pred HHHHHHHHHcCCCcEEEEEEchhccC--HHHHHHHHHHHHHHHhcccc--CCCcEEEEeCCCCCCHHH------------
Confidence 88888888888877899999999975 34444455666666544322 246789999999999966
Q ss_pred Ccchhhhhhc-cCCCC
Q 004202 548 GPCLLDAIDS-LRPPP 562 (768)
Q Consensus 548 G~~LLe~L~~-l~~~~ 562 (768)
|++.|.. ++.|+
T Consensus 190 ---L~~~l~~~l~~~~ 202 (203)
T cd01888 190 ---LLEYIVKKIPTPP 202 (203)
T ss_pred ---HHHHHHHhCCCCC
Confidence 7888744 55443
No 68
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.89 E-value=3.8e-22 Score=241.72 Aligned_cols=223 Identities=22% Similarity=0.346 Sum_probs=168.7
Q ss_pred hccCeEEEEEEEEEeeCC------------------eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccc
Q 004202 400 RERGITMTVAVAYFDSKN------------------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMN 461 (768)
Q Consensus 400 re~GiTid~~~~~~~~~~------------------~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~ 461 (768)
...|||++++...+..+. ..++|||||||++|...+..++..+|++|+|||++.|.
T Consensus 490 EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi------ 563 (1049)
T PRK14845 490 EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF------ 563 (1049)
T ss_pred cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC------
Confidence 348899999988876542 12899999999999988888899999999999999873
Q ss_pred cchhhhHHHHHHHHHcCCCeEEEEEeccccc-ccch---------------hhHHHHHHHHh---HHHhhcCCCC-----
Q 004202 462 TAKGLTREHAQLIRSFGVDQLIVAVNKMDAV-QYSK---------------DRFDSIKVQLG---TFLRSCGFKD----- 517 (768)
Q Consensus 462 ~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv-~~s~---------------e~~~~i~~el~---~~lk~~g~~~----- 517 (768)
+.|+.+++.++...++| +|+|+||+|+. .|.. ..++++...+. ..|...|+..
T Consensus 564 --~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~ 640 (1049)
T PRK14845 564 --KPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDR 640 (1049)
T ss_pred --CHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhh
Confidence 67999999999999998 89999999996 4431 11222222222 2245555542
Q ss_pred -----CCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCC------CCCCCCCCceeeeEeEEeeC-CCcEE
Q 004202 518 -----ASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRP------PPREFSKPLLMPICDVLKSQ-HGQVS 585 (768)
Q Consensus 518 -----~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~------~~~~~~~plr~~I~dv~~~~-~G~V~ 585 (768)
..+++|||||++|+||.+ |+++|..+.. .....+.|+++.|.+++..+ .|+|
T Consensus 641 ~~d~~~~v~iVpVSA~tGeGId~---------------Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~v- 704 (1049)
T PRK14845 641 VQDFTRTVAIVPVSAKTGEGIPE---------------LLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTT- 704 (1049)
T ss_pred hhhcCCCceEEEEEcCCCCCHHH---------------HHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeE-
Confidence 367999999999999976 6666533321 22345789999999999999 9999
Q ss_pred EEEEEecCcccCCCEEEEccCCe--eeEEEeeeec------------ccccceeccCCceEEEecccccccccCCccc
Q 004202 586 ACGKLEAGALRSGLKVLVLPSGE--VGTVHSIERD------------SQSCSVARAGDNIAVSLQGIDVSRVMSGGVL 649 (768)
Q Consensus 586 v~G~V~sG~L~~Gd~v~i~P~~~--~~~VksI~~~------------~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL 649 (768)
++|.|.+|+|++||.|+++|.+. .++||+|... ...++.|.|+.-|.|...|++ .+..|+-+
T Consensus 705 vt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~--~~~aG~~~ 780 (1049)
T PRK14845 705 IDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLE--EVLAGSPI 780 (1049)
T ss_pred EEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcc--ccCCCCeE
Confidence 89999999999999999999765 7899999742 246778888887777644543 23456554
No 69
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.89 E-value=7.7e-23 Score=212.05 Aligned_cols=177 Identities=27% Similarity=0.392 Sum_probs=138.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE-----------
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV----------- 410 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~----------- 410 (768)
+|+++|+.++|||||+++|+.. ... .+++. ....++++.+|.++|+|+.+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~--~~~-------------~~~~~--~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~ 63 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQG--ELD-------------NGRGK--ARLNLFRHKHEVESGRTSSVSNEILGFDSDGEV 63 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--CcC-------------CCCCe--EEeehhhhhhhhhcCchhhhhhhhcccCCCCce
Confidence 5899999999999999999842 111 11111 1234667788888888875433
Q ss_pred -------------EEEeeCCeEEEEEeCCCccchHHHHHHhcc--cCCEEEEEEecCCCccccccccchhhhHHHHHHHH
Q 004202 411 -------------AYFDSKNYHVVVLDSPGHKDFVPNMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR 475 (768)
Q Consensus 411 -------------~~~~~~~~~i~lIDTPGh~~f~~~~i~g~~--~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~ 475 (768)
..++..++.++|+|||||++|.+.++.++. .+|++++|||+..+. ..++++++.++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--------~~~d~~~l~~l~ 135 (224)
T cd04165 64 VNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--------IGMTKEHLGLAL 135 (224)
T ss_pred ecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--------cHHHHHHHHHHH
Confidence 223345788999999999999999999986 799999999999873 579999999999
Q ss_pred HcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCC---------------------CCCCcEEEeecccCCCcc
Q 004202 476 SFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK---------------------DASLTWIPLSALENQNLV 534 (768)
Q Consensus 476 ~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~---------------------~~~i~~IpVSA~tG~gI~ 534 (768)
.+++| +|+|+||+|+++ ++++.....++..+++..|+. ...+|+|++||++|+|+.
T Consensus 136 ~~~ip-~ivvvNK~D~~~--~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~ 212 (224)
T cd04165 136 ALNIP-VFVVVTKIDLAP--ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLD 212 (224)
T ss_pred HcCCC-EEEEEECccccC--HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHH
Confidence 99999 899999999975 667888888888888754433 123589999999999996
Q ss_pred cCCCCcccccccCCcchhhhhhccCCC
Q 004202 535 TAPDDGRLLSWYKGPCLLDAIDSLRPP 561 (768)
Q Consensus 535 e~~~~~~~~~wy~G~~LLe~L~~l~~~ 561 (768)
+ |++.|..+|++
T Consensus 213 ~---------------L~~~L~~lp~~ 224 (224)
T cd04165 213 L---------------LHAFLNLLPLR 224 (224)
T ss_pred H---------------HHHHHHhcCCC
Confidence 6 88888887753
No 70
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=7.2e-22 Score=199.18 Aligned_cols=171 Identities=29% Similarity=0.473 Sum_probs=130.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC----
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 416 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~---- 416 (768)
+||+++|++|+|||||+++|+...+ .+.++....++++|+|++.....+.+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 4899999999999999999994210 124567778889999999887776654
Q ss_pred ----------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEE
Q 004202 417 ----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 486 (768)
Q Consensus 417 ----------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVv 486 (768)
++.++|||||||..|...+..++..+|++|+|+|+..+. ..++.+++.++...++| +++|+
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~--------~~~~~~~~~~~~~~~~~-~iiv~ 127 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGI--------QTQTAECLVIGEILCKK-LIVVL 127 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCC-EEEEE
Confidence 779999999999999999999999999999999999863 35666777777777887 89999
Q ss_pred ecccccccc--hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhc-cCCC
Q 004202 487 NKMDAVQYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPP 561 (768)
Q Consensus 487 NKmDlv~~s--~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~-l~~~ 561 (768)
||+|+.... +..++++.+.+...+...++ ..++++++||++|.|+.+ |++.|.. +++|
T Consensus 128 NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vi~iSa~~g~gi~~---------------L~~~l~~~~~~~ 188 (192)
T cd01889 128 NKIDLIPEEERERKIEKMKKKLQKTLEKTRF--KNSPIIPVSAKPGGGEAE---------------LGKDLNNLIVLP 188 (192)
T ss_pred ECcccCCHHHHHHHHHHHHHHHHHHHHhcCc--CCCCEEEEeccCCCCHHH---------------HHHHHHhccccc
Confidence 999997421 12234444444444433343 357899999999999976 8888854 4443
No 71
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.87 E-value=2.4e-21 Score=195.74 Aligned_cols=185 Identities=26% Similarity=0.325 Sum_probs=138.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
..+|+++|++|+|||||+++|++..+.+..... . -.+.++....++.+|+|+......+..++..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~--------------~-~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE--------------V-EERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc--------------c-cccccccchhHHhcccccccceeEEEECCEE
Confidence 358999999999999999999975444432210 0 0134677778888999999888888889999
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhH
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 499 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~ 499 (768)
+.||||||+.+|...+...+..+|++|+|+|++.+. ..++..++..+...++| +++|+||+|+.. .++
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~--------~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~---~~~ 134 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP--------MPQTRFVLKKALELGLK-PIVVINKIDRPD---ARP 134 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCC-EEEEEECCCCCC---CCH
Confidence 999999999999999999999999999999998763 24666666767778888 789999999974 334
Q ss_pred HHHHHHHhHHHhhcCCCC--CCCcEEEeecccCCCcccCCCCcccccccCC-cchhhhhhc
Q 004202 500 DSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTAPDDGRLLSWYKG-PCLLDAIDS 557 (768)
Q Consensus 500 ~~i~~el~~~lk~~g~~~--~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G-~~LLe~L~~ 557 (768)
..+.+++..++..++... ..++++++||++|.|+.+.. .|-.+ ..|++.|..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~------~~~~~~~~l~~~~~~ 189 (194)
T cd01891 135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLE------DPSEDLEPLFDTIIE 189 (194)
T ss_pred HHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccc------cchhhHHHHHHHHHh
Confidence 445566666665544332 24689999999999997632 23222 237777744
No 72
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=5.7e-21 Score=185.07 Aligned_cols=154 Identities=31% Similarity=0.513 Sum_probs=120.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-CeEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHV 420 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-~~~i 420 (768)
+|+++|++|+|||||+++|++.. .+....+..+++|++.....+... +..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~----------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE----------------------------TDRLPEEKKRGITIDLGFAYLDLPSGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc----------------------------cccchhhhccCceEEeeeEEEEecCCcEE
Confidence 79999999999999999998421 112234556788998888777776 7899
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHH
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 500 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~ 500 (768)
.||||||+++|...+..++..+|++|+|+|++.+. ..++.+++..+...+.+++++|+||+|+.. ...+.
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~--------~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~--~~~~~ 123 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGI--------MPQTREHLEILELLGIKRGLVVLTKADLVD--EDWLE 123 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCc--------cHhHHHHHHHHHHhCCCcEEEEEECccccC--HHHHH
Confidence 99999999999998998999999999999998753 356777777777778745999999999975 33344
Q ss_pred HHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 501 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 501 ~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+++.+.++..++ ...+++++||++|+|+.+
T Consensus 124 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 124 LVEEEIRELLAGTFL--ADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred HHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCHHH
Confidence 455666666655433 246899999999999976
No 73
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.86 E-value=3.3e-21 Score=205.14 Aligned_cols=165 Identities=29% Similarity=0.410 Sum_probs=132.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
||+++||+|+|||||+++|++..+.+.... . ...+ ++.+|..++|+++|+|++.....+.+++++++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g--~-------v~~~----~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIG--E-------VHGG----GATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccc--c-------ccCC----ccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 689999999999999999998777654311 0 0111 45789999999999999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHH
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 501 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~ 501 (768)
|||||||.+|...+..++..+|++|+||||..|. ..++.+++..+...++| +|+++||+|+.+.+ ++.
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~--------~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~---~~~ 135 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV--------EPQTETVWRQADRYNVP-RIAFVNKMDRTGAD---FFR 135 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---HHH
Confidence 9999999999999999999999999999999874 57899999999999999 68899999998533 344
Q ss_pred HHHHHhHHHhhcCCCCCCCcEEEeecccC-CCccc
Q 004202 502 IKVQLGTFLRSCGFKDASLTWIPLSALEN-QNLVT 535 (768)
Q Consensus 502 i~~el~~~lk~~g~~~~~i~~IpVSA~tG-~gI~e 535 (768)
+..++...+.... ...++|+|+..+ .|+.+
T Consensus 136 ~~~~l~~~l~~~~----~~~~~Pisa~~~f~g~vd 166 (270)
T cd01886 136 VVEQIREKLGANP----VPLQLPIGEEDDFRGVVD 166 (270)
T ss_pred HHHHHHHHhCCCc----eEEEeccccCCCceEEEE
Confidence 5666666653322 234689998755 34443
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=1.3e-20 Score=186.36 Aligned_cols=162 Identities=30% Similarity=0.461 Sum_probs=119.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE-----ee
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-----DS 415 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~-----~~ 415 (768)
.||+++|++|+|||||+++|++..+.+..... -.+.++....++.+|+|.......+ ..
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM----------------KEQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC----------------ceEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 37999999999999999999986665532211 1245667778888999987655444 33
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
.+..+.||||||+.+|...+..++..+|++|+|+|++.+. ..++.+++..+...++| +|+|+||+|+.+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~--------~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~- 134 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGV--------EAQTLANFYLALENNLE-IIPVINKIDLPSA- 134 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCc--------cHhhHHHHHHHHHcCCC-EEEEEECCCCCcC-
Confidence 5678899999999999999999999999999999998763 34556666666667888 8999999998642
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
....+.+++... +++. ...++++||++|+|+.+
T Consensus 135 --~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~g~gi~~ 167 (179)
T cd01890 135 --DPERVKQQIEDV---LGLD--PSEAILVSAKTGLGVED 167 (179)
T ss_pred --CHHHHHHHHHHH---hCCC--cccEEEeeccCCCCHHH
Confidence 222233344333 3432 23589999999999976
No 75
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.85 E-value=6.3e-21 Score=175.61 Aligned_cols=106 Identities=36% Similarity=0.610 Sum_probs=101.1
Q ss_pred eeeEEEEEEEeeCCC-CCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeec
Q 004202 658 IATHLELKVLVLDFA-PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEE 736 (768)
Q Consensus 658 ~~~~F~a~i~vl~~~-~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~ 736 (768)
+++.|+|+|.||+++ .+|.+||++.||+|+.+++|+|.+|.+.+|.++|+..+++|++|.+|+.|.|+|++.+|+|+|+
T Consensus 2 ~~~~F~A~i~vl~~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e~ 81 (108)
T cd03704 2 VVTEFEAQIAILELKRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLEK 81 (108)
T ss_pred cccEEEEEEEEEeCCCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEEE
Confidence 367899999999999 8899999999999999999999999999999999877889999999999999999999999999
Q ss_pred ccccCCcceEEEEeCCcEEEEEEEEee
Q 004202 737 FSNCRALGRAFLRSSGRTIAVGIVTRI 763 (768)
Q Consensus 737 ~~~~~~lGRfILR~~g~TvgvG~V~~v 763 (768)
|+++++||||+||++|+|+|+|+|+++
T Consensus 82 ~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 82 FEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred cccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 999999999999999999999999864
No 76
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.85 E-value=2.3e-20 Score=191.70 Aligned_cols=170 Identities=24% Similarity=0.344 Sum_probs=130.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-----C
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-----K 416 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-----~ 416 (768)
+|+++||+|+|||||+++|++..+.+... ++.....++.++...+|+++|+|+......+.+ .
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~ 69 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGK 69 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCC
Confidence 79999999999999999999876665321 333444566789999999999999877666643 3
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc---
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--- 493 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~--- 493 (768)
.+.++|||||||.+|...+..++..+|++|+|+|+..+. ..++.+++..+...++| +++|+||+|++.
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~--------~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~ 140 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGV--------TSNTERLIRHAILEGLP-IVLVINKIDRLILEL 140 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECcccCcccc
Confidence 478999999999999999999999999999999998763 34666777777777877 899999999862
Q ss_pred -----cchhhHHHHHHHHhHHHhhcCCCCCCCcEEE-------eecccCCCc
Q 004202 494 -----YSKDRFDSIKVQLGTFLRSCGFKDASLTWIP-------LSALENQNL 533 (768)
Q Consensus 494 -----~s~e~~~~i~~el~~~lk~~g~~~~~i~~Ip-------VSA~tG~gI 533 (768)
...+++.++.+++..+++..++.+ .+.|+| .|++.|+++
T Consensus 141 ~l~~~~~~~~l~~~i~~~n~~~~~~~~~~-~~~~~p~~~nv~~~s~~~~w~~ 191 (213)
T cd04167 141 KLPPNDAYFKLRHIIDEVNNIIASFSTTL-SFLFSPENGNVCFASSKFGFCF 191 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCC-ceEeccCCCeEEEEecCCCeEE
Confidence 223567788888888888887643 233444 455555544
No 77
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.1e-21 Score=208.95 Aligned_cols=303 Identities=24% Similarity=0.347 Sum_probs=210.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE-----
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF----- 413 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~----- 413 (768)
...|+.++.|+|+|||||...|....+.|.... .|. +.++|..+.|++||+||......+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~ak----------aGe-----~Rf~DtRkDEQeR~iTIKStAISl~~e~~ 82 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAK----------AGE-----TRFTDTRKDEQERGITIKSTAISLFFEMS 82 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecc----------cCC-----ccccccccchhhcceEeeeeeeeehhhhh
Confidence 467899999999999999999998877775332 222 346899999999999998765543
Q ss_pred -----------eeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeE
Q 004202 414 -----------DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 482 (768)
Q Consensus 414 -----------~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~i 482 (768)
+.+++.|+|||.|||.+|..+.-.+++..|.+++|||+-.|+ .-||+..+..+....|++
T Consensus 83 ~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~Gv--------CVQTETVLrQA~~ERIkP- 153 (842)
T KOG0469|consen 83 DDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV--------CVQTETVLRQAIAERIKP- 153 (842)
T ss_pred HhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCce--------EechHHHHHHHHHhhccc-
Confidence 124678999999999999999999999999999999999986 469999999998888884
Q ss_pred EEEEeccccc----ccchhh----HHHHHHHHhHHHhhcCCCC--------CCCcEEEeecccCCCcccCC---------
Q 004202 483 IVAVNKMDAV----QYSKDR----FDSIKVQLGTFLRSCGFKD--------ASLTWIPLSALENQNLVTAP--------- 537 (768)
Q Consensus 483 IVVvNKmDlv----~~s~e~----~~~i~~el~~~lk~~g~~~--------~~i~~IpVSA~tG~gI~e~~--------- 537 (768)
++++||||+. ..++|. |+.+.+.+...+..++..+ ..-.+-+.|++.|++..-+.
T Consensus 154 vlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF 233 (842)
T KOG0469|consen 154 VLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKF 233 (842)
T ss_pred eEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHh
Confidence 7899999964 222222 2223333333333333211 11122335666666542210
Q ss_pred ----------------CCcccccc--------------------------------------------------------
Q 004202 538 ----------------DDGRLLSW-------------------------------------------------------- 545 (768)
Q Consensus 538 ----------------~~~~~~~w-------------------------------------------------------- 545 (768)
.+.+..+|
T Consensus 234 ~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd 313 (842)
T KOG0469|consen 234 GIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKD 313 (842)
T ss_pred CCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceecccccc
Confidence 00001112
Q ss_pred --------------c-CCcchhhhh-hccCCC-------------------------CCCCCCCceeeeEeEEeeC-CCc
Q 004202 546 --------------Y-KGPCLLDAI-DSLRPP-------------------------PREFSKPLLMPICDVLKSQ-HGQ 583 (768)
Q Consensus 546 --------------y-~G~~LLe~L-~~l~~~-------------------------~~~~~~plr~~I~dv~~~~-~G~ 583 (768)
. .+.+||+.| .++|.| .++.+.|+.|.|....... .|.
T Consensus 314 ~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgR 393 (842)
T KOG0469|consen 314 LEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGR 393 (842)
T ss_pred ccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCce
Confidence 1 134567766 455554 2356789999999998877 999
Q ss_pred EEEEEEEecCcccCCCEEEEccCC------eeeEEEeeee-------cccccceeccCCceEEEecccccccccCCcccc
Q 004202 584 VSACGKLEAGALRSGLKVLVLPSG------EVGTVHSIER-------DSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 584 V~v~G~V~sG~L~~Gd~v~i~P~~------~~~~VksI~~-------~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
..++|||.+|.+..|++++|...+ ...-+|+||+ .-++++-..||.+++|. |+|..-++.|.+-.
T Consensus 394 FyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlv--GvDqfLvKtGTiTt 471 (842)
T KOG0469|consen 394 FYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLV--GVDQFLVKTGTITT 471 (842)
T ss_pred EEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEe--ehhHhhhccCceee
Confidence 989999999999999999997433 1344666664 45789999999999987 88877666666555
Q ss_pred cCCCCcceeeEEEEEEE
Q 004202 651 HPDFPVAIATHLELKVL 667 (768)
Q Consensus 651 ~~~~p~~~~~~F~a~i~ 667 (768)
.....-.-.-.|.+..+
T Consensus 472 ~e~AHNmrvMKFSVSPV 488 (842)
T KOG0469|consen 472 SEAAHNMRVMKFSVSPV 488 (842)
T ss_pred hhhhccceEEEeeccce
Confidence 44333333445555433
No 78
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.84 E-value=2.5e-20 Score=194.92 Aligned_cols=130 Identities=37% Similarity=0.517 Sum_probs=112.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
||+++||+|+|||||+++|++..+.+.... +-. .-.+.+|...+|+++|+|+......+.+++.+++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g------------~v~-~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLG------------SVD-KGTTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccc------------ccc-CCcccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 589999999999999999998877664321 000 0124578889999999999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
|||||||.+|...+..+++.+|++|+|||+..+. ..++.+++.++...++| +++++||+|+..
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~--------~~~~~~~~~~~~~~~~P-~iivvNK~D~~~ 130 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEGV--------QAQTRILWRLLRKLNIP-TIIFVNKIDRAG 130 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECccccC
Confidence 9999999999999999999999999999999873 46888999999999999 789999999875
No 79
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.84 E-value=3.3e-20 Score=170.32 Aligned_cols=106 Identities=46% Similarity=0.749 Sum_probs=101.5
Q ss_pred eeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecc
Q 004202 658 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEF 737 (768)
Q Consensus 658 ~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~ 737 (768)
.+..|+|+++||.++.||.+|+++.+|+|+..++|+|.+|.+.+|.+|++..+++|++|++|+.|.|+|.+++|+|+++|
T Consensus 2 ~~~~f~A~v~~l~~~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 81 (107)
T cd04093 2 SSTRFEARILTFNVDKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLELF 81 (107)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEEEc
Confidence 46789999999998999999999999999999999999999999999998877889999999999999999999999999
Q ss_pred cccCCcceEEEEeCCcEEEEEEEEee
Q 004202 738 SNCRALGRAFLRSSGRTIAVGIVTRI 763 (768)
Q Consensus 738 ~~~~~lGRfILR~~g~TvgvG~V~~v 763 (768)
.+++.+|||+||++|+|+|+|+|++|
T Consensus 82 ~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 82 KDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred ccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 99999999999999999999999875
No 80
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.83 E-value=1.2e-19 Score=179.83 Aligned_cols=168 Identities=39% Similarity=0.602 Sum_probs=131.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|.+|+|||||+++|++......... ....+.++....+..+|+|++.....+...+..++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDG---------------TVEETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCC---------------ceecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 589999999999999999997644332211 01113455666778889999988888888899999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHH
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 501 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~ 501 (768)
||||||+.+|...+...+..+|++++|+|+..+. ..+..+.+..+...+.| +++|+||+|+.. ++.+..
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~--~~~~~~ 134 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGV--------QPQTREHLRIAREGGLP-IIVAINKIDRVG--EEDLEE 134 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCC--------cHHHHHHHHHHHHCCCC-eEEEEECCCCcc--hhcHHH
Confidence 9999999999999999999999999999998763 34666777777777777 899999999985 445556
Q ss_pred HHHHHhHHHhhcCC---------CCCCCcEEEeecccCCCccc
Q 004202 502 IKVQLGTFLRSCGF---------KDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 502 i~~el~~~lk~~g~---------~~~~i~~IpVSA~tG~gI~e 535 (768)
..+++...++..+. .....+++++||++|.|+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~ 177 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEE 177 (189)
T ss_pred HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHH
Confidence 66777777766553 23467899999999999976
No 81
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.81 E-value=1.2e-19 Score=165.81 Aligned_cols=102 Identities=37% Similarity=0.540 Sum_probs=98.4
Q ss_pred eeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeeccc
Q 004202 659 ATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFS 738 (768)
Q Consensus 659 ~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~~ 738 (768)
++.|+|+++||+++.||.+|+++.+|+|+.+++|+|.+|.+.+|.++++..+++|++|++|+.+.|+|.+++|+|+++|.
T Consensus 3 ~~~f~A~v~~l~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~e~~~ 82 (104)
T cd03705 3 AESFTAQVIVLNHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVVETFS 82 (104)
T ss_pred ccEEEEEEEEECCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEEEEcc
Confidence 57899999999998999999999999999999999999999999999988778899999999999999999999999999
Q ss_pred ccCCcceEEEEeCCcEEEEEEE
Q 004202 739 NCRALGRAFLRSSGRTIAVGIV 760 (768)
Q Consensus 739 ~~~~lGRfILR~~g~TvgvG~V 760 (768)
+++.+|||+||++|+|+|+|+|
T Consensus 83 ~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 83 EYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred cCCCccCEEEEeCCCEEEEEEC
Confidence 9999999999999999999986
No 82
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=2.9e-19 Score=174.56 Aligned_cols=143 Identities=24% Similarity=0.293 Sum_probs=100.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|.+|+|||||+|+|++....+ ..-+|+|++.....+...+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v-------------------------------~n~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV-------------------------------GNWPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE-------------------------------EESTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee-------------------------------cCCCCCCeeeeeEEEEecCceE
Confidence 479999999999999999999643222 1128999999999999999999
Q ss_pred EEEeCCCccch----HHHH--HHh--cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004202 421 VVLDSPGHKDF----VPNM--ISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 421 ~lIDTPGh~~f----~~~~--i~g--~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
.|+|+||.-.+ ..+. ... ...+|++|+|+||++- ......+..+..+|+| +|+|+||||+.
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l----------~r~l~l~~ql~e~g~P-~vvvlN~~D~a 118 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL----------ERNLYLTLQLLELGIP-VVVVLNKMDEA 118 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH----------HHHHHHHHHHHHTTSS-EEEEEETHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH----------HHHHHHHHHHHHcCCC-EEEEEeCHHHH
Confidence 99999993221 1111 222 3579999999999862 3445566777789999 89999999988
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ..+..-.+.+.+.+ | +|++|+||++|+|+.+
T Consensus 119 ~~--~g~~id~~~Ls~~L---g-----~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 119 ER--KGIEIDAEKLSERL---G-----VPVIPVSARTGEGIDE 151 (156)
T ss_dssp HH--TTEEE-HHHHHHHH---T-----S-EEEEBTTTTBTHHH
T ss_pred HH--cCCEECHHHHHHHh---C-----CCEEEEEeCCCcCHHH
Confidence 52 22111133444443 3 5899999999999976
No 83
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.80 E-value=1.1e-18 Score=185.48 Aligned_cols=149 Identities=30% Similarity=0.424 Sum_probs=119.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
.||+|+||+|+|||||+++|++..+.+...... .+++.... ..+|...+|+++|+|+......++++++.+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v--------~~~~~~~~-t~~D~~~~e~~rg~si~~~~~~~~~~~~~i 73 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAV--------KARKSRKH-ATSDWMEIEKQRGISVTSSVMQFEYRDCVI 73 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCcee--------cccccCCC-ccCCCcHHHHhCCCCeEEEEEEEeeCCEEE
Confidence 689999999999999999999887776543110 01111111 246888999999999999999999999999
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHH
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 500 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~ 500 (768)
+|||||||.+|...+..++..+|++|+|+|+..+. ..++..++.++...++| +++++||+|+... .+.
T Consensus 74 ~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~--------~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a---~~~ 141 (267)
T cd04169 74 NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGV--------EPQTRKLFEVCRLRGIP-IITFINKLDREGR---DPL 141 (267)
T ss_pred EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCc--------cHHHHHHHHHHHhcCCC-EEEEEECCccCCC---CHH
Confidence 99999999999999999999999999999999873 45778888888888999 8899999998753 233
Q ss_pred HHHHHHhHHH
Q 004202 501 SIKVQLGTFL 510 (768)
Q Consensus 501 ~i~~el~~~l 510 (768)
.+.++++..+
T Consensus 142 ~~~~~l~~~l 151 (267)
T cd04169 142 ELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 84
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=1.4e-18 Score=169.37 Aligned_cols=151 Identities=28% Similarity=0.367 Sum_probs=110.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC---C
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---N 417 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~---~ 417 (768)
+.|+++|++|+|||||+++|+.... .....+++|.+.....+... +
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV-------------------------------AAGEAGGITQHIGAFEVPAEVLKI 49 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc-------------------------------ccccCCCeEEeeccEEEecccCCc
Confidence 3699999999999999999984210 11123567777666666654 7
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
..+.||||||+..|...+..++..+|++++|+|++.+. ..++.+.+..+...++| +++|+||+|+.....+
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~ 120 (168)
T cd01887 50 PGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV--------MPQTIEAIKLAKAANVP-FIVALNKIDKPNANPE 120 (168)
T ss_pred ceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCC-EEEEEEceecccccHH
Confidence 88999999999999888888889999999999998763 35777788888888998 8999999999753333
Q ss_pred hHHHHHHHHhHHHhhc--CCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSIKVQLGTFLRSC--GFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~--g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+ ...+..+.... .+ ...++++++||++|+|+.+
T Consensus 121 ~~---~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 121 RV---KNELSELGLQGEDEW-GGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred HH---HHHHHHhhccccccc-cCcCcEEEeecccCCCHHH
Confidence 32 23332222110 11 1346899999999999966
No 85
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=6.4e-19 Score=199.10 Aligned_cols=240 Identities=26% Similarity=0.378 Sum_probs=172.0
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 004202 335 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 414 (768)
Q Consensus 335 ~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~ 414 (768)
....+.+.++|+||+|.|||-|+..|.+. +..+....|+|..++..+|.
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~t-------------------------------NVqegeaggitqqIgAt~fp 518 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGT-------------------------------NVQEGEAGGITQQIGATYFP 518 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhcc-------------------------------ccccccccceeeeccccccc
Confidence 34567889999999999999999999842 11223336788888877774
Q ss_pred eC------------------CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH
Q 004202 415 SK------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS 476 (768)
Q Consensus 415 ~~------------------~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~ 476 (768)
.. --.+.+||||||+.|.....+|...||++|||||..+| +.+||.|.+.+++.
T Consensus 519 ~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG--------lepqtiESi~lLR~ 590 (1064)
T KOG1144|consen 519 AENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG--------LEPQTIESINLLRM 590 (1064)
T ss_pred hHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhcc--------CCcchhHHHHHHHh
Confidence 32 13588999999999999999999999999999999998 47899999999999
Q ss_pred cCCCeEEEEEeccccc-ccc----------------------hhhHHHHHHHHhHHHhhcCCC------C----CCCcEE
Q 004202 477 FGVDQLIVAVNKMDAV-QYS----------------------KDRFDSIKVQLGTFLRSCGFK------D----ASLTWI 523 (768)
Q Consensus 477 lgip~iIVVvNKmDlv-~~s----------------------~e~~~~i~~el~~~lk~~g~~------~----~~i~~I 523 (768)
...| +||++||+|++ +|- .+|+..|..++ ..-|++ + .-+.++
T Consensus 591 rktp-FivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~ef----aEQgLN~~LyykNk~~~~~vsiV 665 (1064)
T KOG1144|consen 591 RKTP-FIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEF----AEQGLNAELYYKNKEMGETVSIV 665 (1064)
T ss_pred cCCC-eEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHcccchhheeecccccceEEee
Confidence 9999 99999999976 342 11122222222 122222 1 236789
Q ss_pred EeecccCCCcccCCCCcccccccCCcchhhhhhccCCC----CCCCCCCceeeeEeEEeeC-CCcEEEEEEEecCcccCC
Q 004202 524 PLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP----PREFSKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSG 598 (768)
Q Consensus 524 pVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~----~~~~~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~G 598 (768)
|+||.+|+||.+ ||-.|-++... .-.....+...|.+|-.+. .|+. +-..+..|.|+.|
T Consensus 666 PTSA~sGeGipd---------------Ll~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtT-IDViLvNG~L~eG 729 (1064)
T KOG1144|consen 666 PTSAISGEGIPD---------------LLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTT-IDVILVNGELHEG 729 (1064)
T ss_pred ecccccCCCcHH---------------HHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCce-EEEEEEcceeccC
Confidence 999999999955 55554333211 1112345666777777777 8987 7889999999999
Q ss_pred CEEEEccCC----------------eeeEEEeeeeccc-------------ccceeccCCceEEE
Q 004202 599 LKVLVLPSG----------------EVGTVHSIERDSQ-------------SCSVARAGDNIAVS 634 (768)
Q Consensus 599 d~v~i~P~~----------------~~~~VksI~~~~~-------------~v~~A~aGd~V~l~ 634 (768)
|.|.+...+ +..+|++-+.|+. .++.|.||-++-+.
T Consensus 730 D~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~Vv 794 (1064)
T KOG1144|consen 730 DQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVV 794 (1064)
T ss_pred CEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEEe
Confidence 999886543 2467777666654 44556677665554
No 86
>COG1159 Era GTPase [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=183.25 Aligned_cols=180 Identities=23% Similarity=0.288 Sum_probs=127.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
++.--|+|+|.+|+|||||+|+|++...+|.++. +.+|.......+..+.
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k------------------------------~QTTR~~I~GI~t~~~ 53 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPK------------------------------PQTTRNRIRGIVTTDN 53 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCC------------------------------cchhhhheeEEEEcCC
Confidence 3456799999999999999999998877776654 5667777777777889
Q ss_pred eEEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004202 418 YHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 418 ~~i~lIDTPGh~~--------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
.+++|+||||... +.+....++..+|+++||||+.++. ....+..+..++....| +|+++||+
T Consensus 54 ~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~--------~~~d~~il~~lk~~~~p-vil~iNKI 124 (298)
T COG1159 54 AQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGW--------GPGDEFILEQLKKTKTP-VILVVNKI 124 (298)
T ss_pred ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccC--------CccHHHHHHHHhhcCCC-eEEEEEcc
Confidence 9999999999322 3455577788899999999999863 44566667777776677 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhc-cCCCC------
Q 004202 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDS-LRPPP------ 562 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~-l~~~~------ 562 (768)
|++.. +..+..+.+.+... ..| ..++|+||++|.|+.. |++.|.. ++..+
T Consensus 125 D~~~~-~~~l~~~~~~~~~~---~~f----~~ivpiSA~~g~n~~~---------------L~~~i~~~Lpeg~~~yp~d 181 (298)
T COG1159 125 DKVKP-KTVLLKLIAFLKKL---LPF----KEIVPISALKGDNVDT---------------LLEIIKEYLPEGPWYYPED 181 (298)
T ss_pred ccCCc-HHHHHHHHHHHHhh---CCc----ceEEEeeccccCCHHH---------------HHHHHHHhCCCCCCcCChh
Confidence 99863 22122233333222 233 3789999999999965 7777744 33221
Q ss_pred CCCCCCceeeeEeEEee
Q 004202 563 REFSKPLLMPICDVLKS 579 (768)
Q Consensus 563 ~~~~~plr~~I~dv~~~ 579 (768)
.-.+.|.+|.+.++.+-
T Consensus 182 ~itD~~~rf~~aEiiRE 198 (298)
T COG1159 182 QITDRPERFLAAEIIRE 198 (298)
T ss_pred hccCChHHHHHHHHHHH
Confidence 11245556555555443
No 87
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=192.41 Aligned_cols=155 Identities=26% Similarity=0.351 Sum_probs=132.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|||+|.||+|||||+|+|+++.-.|... .+|+|+|.....+++++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~------------------------------~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSD------------------------------IAGTTRDSIDIEFERDG 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecC------------------------------CCCccccceeeeEEECC
Confidence 357999999999999999999999765555433 48999999999999999
Q ss_pred eEEEEEeCCCccc----------h-HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEE
Q 004202 418 YHVVVLDSPGHKD----------F-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 486 (768)
Q Consensus 418 ~~i~lIDTPGh~~----------f-~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVv 486 (768)
+.+.||||+|.++ | +..++..+..+|+++||+||++|. ..|....+.++...|.+ +|||+
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~--------~~qD~~ia~~i~~~g~~-~vIvv 296 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGI--------SEQDLRIAGLIEEAGRG-IVIVV 296 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCc--------hHHHHHHHHHHHHcCCC-eEEEE
Confidence 9999999999443 2 344567788899999999999984 57999999999999999 89999
Q ss_pred ecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 487 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
||+|+++.+...+++.+.++...+..++|. +++++||++|.|+.+
T Consensus 297 NKWDl~~~~~~~~~~~k~~i~~~l~~l~~a----~i~~iSA~~~~~i~~ 341 (444)
T COG1160 297 NKWDLVEEDEATMEEFKKKLRRKLPFLDFA----PIVFISALTGQGLDK 341 (444)
T ss_pred EccccCCchhhHHHHHHHHHHHHhccccCC----eEEEEEecCCCChHH
Confidence 999999765677888889999888777764 789999999999965
No 88
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.4e-17 Score=189.71 Aligned_cols=171 Identities=27% Similarity=0.390 Sum_probs=137.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...||+++.|+|||||||...|+...|.|.++...++ .++|..++|..||||+..+......+++
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagki---------------rfld~redeq~rgitmkss~is~~~~~~ 72 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKI---------------RFLDTREDEQTRGITMKSSAISLLHKDY 72 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccce---------------eeccccchhhhhceeeeccccccccCce
Confidence 5679999999999999999999988888876653332 3689999999999999988888777999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc-----
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ----- 493 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~----- 493 (768)
.++|||+|||.||-.+..++.+.+|.++++||+.+|+ ..||...++.+-.-|.+ .|+|+||||++-
T Consensus 73 ~~nlidspghvdf~sevssas~l~d~alvlvdvvegv--------~~qt~~vlrq~~~~~~~-~~lvinkidrl~~el~l 143 (887)
T KOG0467|consen 73 LINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGV--------CSQTYAVLRQAWIEGLK-PILVINKIDRLITELKL 143 (887)
T ss_pred EEEEecCCCccchhhhhhhhhhhcCCcEEEEeecccc--------chhHHHHHHHHHHccCc-eEEEEehhhhHHHHHhc
Confidence 9999999999999999999999999999999999995 67999999988888988 799999999432
Q ss_pred cchhhHHHH---HHHHhHHHh-------------------hcCCCCCCCcEEEeecccCCCc
Q 004202 494 YSKDRFDSI---KVQLGTFLR-------------------SCGFKDASLTWIPLSALENQNL 533 (768)
Q Consensus 494 ~s~e~~~~i---~~el~~~lk-------------------~~g~~~~~i~~IpVSA~tG~gI 533 (768)
...|.+..+ .+++...+. ..-|.+..-.++..||..|.++
T Consensus 144 sp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f 205 (887)
T KOG0467|consen 144 SPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGF 205 (887)
T ss_pred ChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccc
Confidence 123444433 333333332 2224445556799999999886
No 89
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4e-19 Score=189.91 Aligned_cols=133 Identities=34% Similarity=0.455 Sum_probs=115.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+..||+|+.|+|+||||...+|++..|.+.... ...+|. .++|-...||+||+|+..+...|+|+++
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g---------~vddgd----tvtdfla~erergitiqsaav~fdwkg~ 102 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG---------DVDDGD----TVTDFLAIERERGITIQSAAVNFDWKGH 102 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhccc---------ccCCCc----hHHHHHHHHHhcCceeeeeeeecccccc
Confidence 346899999999999999999999887764331 122222 3567778999999999999999999999
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
++++||||||.+|.-+..+.++..|.++.|+|++.|+ .+||...++.+..+.+| -++.+||||...
T Consensus 103 rinlidtpghvdf~leverclrvldgavav~dasagv--------e~qtltvwrqadk~~ip-~~~finkmdk~~ 168 (753)
T KOG0464|consen 103 RINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGV--------EAQTLTVWRQADKFKIP-AHCFINKMDKLA 168 (753)
T ss_pred eEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCc--------ccceeeeehhccccCCc-hhhhhhhhhhhh
Confidence 9999999999999999999999999999999999984 68999999999999999 578999999875
No 90
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.76 E-value=5.4e-18 Score=153.84 Aligned_cols=99 Identities=48% Similarity=0.772 Sum_probs=89.3
Q ss_pred CcceeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEe
Q 004202 655 PVAIATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCV 734 (768)
Q Consensus 655 p~~~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~ 734 (768)
|+..++.|+|++++|++++||..||++.+|+++.+++|+|.+|.+.+| +|+.. |++|++||.|.|+|++++|+|+
T Consensus 1 ~~k~~~~f~A~v~vl~~~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi~v 75 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDHPKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPICV 75 (99)
T ss_dssp SSEEEEEEEEEEEESSGSS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEEEcCCccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccceee
Confidence 467889999999999999999999999999999999999999999998 55543 8999999999999999999999
Q ss_pred ecccccCCcceEEEEeCCcEEEEEEEEeec
Q 004202 735 EEFSNCRALGRAFLRSSGRTIAVGIVTRII 764 (768)
Q Consensus 735 e~~~~~~~lGRfILR~~g~TvgvG~V~~v~ 764 (768)
++|+ ||+||++|+|+|+|+|++|+
T Consensus 76 e~~~------Rf~lR~~~~Tia~G~V~~vi 99 (99)
T PF03143_consen 76 EPFS------RFILRDGGKTIAVGVVTKVI 99 (99)
T ss_dssp TTTT------EEEEEETTEEEEEEEEEEE-
T ss_pred ecCc------eEEEccCCeEEEEEEEEEeC
Confidence 9987 99999999999999999974
No 91
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.75 E-value=8.8e-18 Score=164.06 Aligned_cols=159 Identities=20% Similarity=0.209 Sum_probs=102.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|+.|+|||||+++|++..... .+ . .......|+......+..++..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~--------------~~-----------~--~~~~~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY--------------KG-----------L--PPSKITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc--------------cC-----------C--cccccCCccccceEEEEECCEEEE
Confidence 58999999999999999998532110 00 0 001123344444455666789999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHH
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 501 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~ 501 (768)
||||||+.+|...+...+..+|++|+|+|+.... .+........+.+......++| +++|+||+|+.. ....++
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~--~~~~~~ 127 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRE---RFEESKSALEKVLRNEALEGVP-LLILANKQDLPD--ALSVEE 127 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHH---HHHHHHHHHHHHHhChhhcCCC-EEEEEEcccccc--CCCHHH
Confidence 9999999999888888899999999999998641 1111111111122211224677 899999999865 222333
Q ss_pred HHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 502 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 502 i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+...+.......+. ..++++++||++|+|+.+
T Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 128 IKEVFQDKAEEIGR--RDCLVLPVSALEGTGVRE 159 (167)
T ss_pred HHHHhccccccccC--CceEEEEeeCCCCcCHHH
Confidence 43333333322232 346899999999999976
No 92
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.74 E-value=1.5e-17 Score=183.36 Aligned_cols=151 Identities=27% Similarity=0.322 Sum_probs=121.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
+.|||+|.+|+|||||+|+|++...+|.++. +|+|.|..+...++.++.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~------------------------------pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT------------------------------PGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC------------------------------CCCccCCccceeEEcCceE
Confidence 6899999999999999999998766665443 9999999999999999999
Q ss_pred EEEeCCCccc-----hHHH----HHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004202 421 VVLDSPGHKD-----FVPN----MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 421 ~lIDTPGh~~-----f~~~----~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
.+|||+|... +... +..++..||++|||||+..|+ +++..+...+++..+.| +|+|+||+|-
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Gi--------t~~D~~ia~~Lr~~~kp-viLvvNK~D~ 124 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGI--------TPADEEIAKILRRSKKP-VILVVNKIDN 124 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHhcCCC-EEEEEEcccC
Confidence 9999999653 3333 356677899999999999984 67888899999977788 9999999997
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhcc
Q 004202 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSL 558 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l 558 (768)
... +.....+.++|+. .++||||..|.|+.+ |++++...
T Consensus 125 ~~~---------e~~~~efyslG~g----~~~~ISA~Hg~Gi~d---------------Lld~v~~~ 163 (444)
T COG1160 125 LKA---------EELAYEFYSLGFG----EPVPISAEHGRGIGD---------------LLDAVLEL 163 (444)
T ss_pred chh---------hhhHHHHHhcCCC----CceEeehhhccCHHH---------------HHHHHHhh
Confidence 631 1122223456764 459999999999966 88887544
No 93
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=3.8e-17 Score=158.83 Aligned_cols=153 Identities=25% Similarity=0.270 Sum_probs=107.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
+++|+++|++|+|||||+++|++....+ ....+++|.......+..++..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI------------------------------VSDIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee------------------------------ccCCCCCccCceeeEEEECCee
Confidence 5789999999999999999998432111 1112556666655666677888
Q ss_pred EEEEeCCCccch----------H-HHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec
Q 004202 420 VVVLDSPGHKDF----------V-PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 488 (768)
Q Consensus 420 i~lIDTPGh~~f----------~-~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK 488 (768)
+.+|||||+.+. . ..+...+..+|++|+|+|+..+. ..+....+..+...+.| +++++||
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~--------~~~~~~~~~~~~~~~~~-~iiv~nK 122 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGI--------TEQDLRIAGLILEEGKA-LVIVVNK 122 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCc--------chhHHHHHHHHHhcCCC-EEEEEec
Confidence 999999996443 1 23345667899999999998763 22344455555666777 8999999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+.+......+.+.+.+...+... ...+++++||++|.|+.+
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 123 WDLVEKDSKTMKEFKKEIRRKLPFL----DYAPIVFISALTGQGVDK 165 (174)
T ss_pred cccCCccHHHHHHHHHHHHhhcccc----cCCceEEEeccCCCCHHH
Confidence 9998643345555556665554322 235789999999999966
No 94
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=2.3e-17 Score=186.63 Aligned_cols=153 Identities=25% Similarity=0.276 Sum_probs=118.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++....+ ....+|+|.+.....+..++.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~~ 220 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVI------------------------------VSDIAGTTRDSIDIPFERNGK 220 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeee------------------------------cCCCCCceECcEeEEEEECCc
Confidence 45899999999999999999999532111 123478888887777878888
Q ss_pred EEEEEeCCCccchH-----------HHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEe
Q 004202 419 HVVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 487 (768)
Q Consensus 419 ~i~lIDTPGh~~f~-----------~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvN 487 (768)
.+.||||||+.++. ..++..+..+|++|+|+|+..+. ..+..+.+..+...+.| +|||+|
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~--------~~~~~~~~~~~~~~~~~-iiiv~N 291 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGI--------TEQDLRIAGLILEAGKA-LVIVVN 291 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999975432 22355778899999999999874 45777777777778888 899999
Q ss_pred cccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 488 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 488 KmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+|++. +.+.++.+..++...+...+ ..+++++||++|.|+.+
T Consensus 292 K~Dl~~-~~~~~~~~~~~~~~~~~~~~----~~~vi~~SA~~g~~v~~ 334 (429)
T TIGR03594 292 KWDLVK-DEKTREEFKKELRRKLPFLD----FAPIVFISALTGQGVDK 334 (429)
T ss_pred CcccCC-CHHHHHHHHHHHHHhcccCC----CCceEEEeCCCCCCHHH
Confidence 999983 35566667777766654433 36889999999999976
No 95
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.74 E-value=1.4e-17 Score=152.10 Aligned_cols=100 Identities=19% Similarity=0.344 Sum_probs=93.1
Q ss_pred eeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecc
Q 004202 658 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEF 737 (768)
Q Consensus 658 ~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~ 737 (768)
++..|+|+++|++ +.||.+|+++.+|+|+.+++|+|.+|.+++|.+|++. .+|++|..|+.|.|+|++++|+|+++|
T Consensus 2 ~~~~f~a~i~~l~-~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~--~~~~~l~~n~~a~v~i~~~~pi~~d~~ 78 (103)
T cd04095 2 VSDQFAATLVWMD-EEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEH--EAADTLELNDIGRVELSLSKPLAFDPY 78 (103)
T ss_pred ccceeeEEEEEec-CcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCc--cCCCEECCCCeEEEEEEeCCccEecch
Confidence 3578999999998 5699999999999999999999999999999999873 488999999999999999999999999
Q ss_pred cccCCcceEEE--EeCCcEEEEEEE
Q 004202 738 SNCRALGRAFL--RSSGRTIAVGIV 760 (768)
Q Consensus 738 ~~~~~lGRfIL--R~~g~TvgvG~V 760 (768)
.+++++|||+| |++|+|+|+|+|
T Consensus 79 ~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 79 RENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred hhCCCcceEEEEECCCCcEEEEEeC
Confidence 99999999999 556999999986
No 96
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.74 E-value=3.9e-17 Score=174.01 Aligned_cols=145 Identities=21% Similarity=0.244 Sum_probs=99.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|++|+|||||+|+|++....+. ...+++|.+........++.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~v------------------------------s~~~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISIT------------------------------SPKAQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeec------------------------------CCCCCcccCcEEEEEEcCCcEEE
Confidence 689999999999999999996432221 12255666544444445677899
Q ss_pred EEeCCCccc--------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004202 422 VLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 422 lIDTPGh~~--------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
|+||||+.+ +.+.+...+..+|++++|+|++.+. . .....+..+...+.| +++|+||+|++.
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~--------~-~~~~i~~~l~~~~~p-~ilV~NK~Dl~~ 121 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWN--------G-DGEFVLTKLQNLKRP-VVLTRNKLDNKF 121 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC--------c-hHHHHHHHHHhcCCC-EEEEEECeeCCC
Confidence 999999643 2333456778999999999998752 1 114455566667888 899999999974
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+.. ...+..+....++ .+++++||++|.|+.+
T Consensus 122 --~~~~---~~~~~~~~~~~~~----~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 122 --KDKL---LPLIDKYAILEDF----KDIVPISALTGDNTSF 154 (270)
T ss_pred --HHHH---HHHHHHHHhhcCC----CceEEEecCCCCCHHH
Confidence 2222 2233333332232 2689999999999976
No 97
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=4.2e-17 Score=184.93 Aligned_cols=152 Identities=26% Similarity=0.309 Sum_probs=118.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++....+ ....+|+|.+.....+..++.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~~~ 221 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVI------------------------------VSDIAGTTRDSIDTPFERDGQ 221 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceEEEEEEEEEECCe
Confidence 46899999999999999999999532211 123478899888778888899
Q ss_pred EEEEEeCCCccc----------h-HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEe
Q 004202 419 HVVVLDSPGHKD----------F-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 487 (768)
Q Consensus 419 ~i~lIDTPGh~~----------f-~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvN 487 (768)
.+.||||||+.+ | ...++..+..+|++|+|+|+..+. ..|..+.+.++...+.| +|||+|
T Consensus 222 ~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~--------~~~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 222 KYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGI--------TEQDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCc-EEEEEE
Confidence 999999999643 1 133456788999999999999873 45777788888888888 899999
Q ss_pred cccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 488 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 488 KmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+|+.+ .+..+++.+++...+.... .++++++||++|.|+.+
T Consensus 293 K~Dl~~--~~~~~~~~~~~~~~l~~~~----~~~i~~~SA~~~~gv~~ 334 (435)
T PRK00093 293 KWDLVD--EKTMEEFKKELRRRLPFLD----YAPIVFISALTGQGVDK 334 (435)
T ss_pred CccCCC--HHHHHHHHHHHHHhccccc----CCCEEEEeCCCCCCHHH
Confidence 999984 4455666667766654332 36899999999999976
No 98
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.73 E-value=4.9e-17 Score=172.95 Aligned_cols=144 Identities=30% Similarity=0.410 Sum_probs=116.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
||+++||+|+|||||+++|++..+.+.... .-. .-.+.+|...+++++++|+......+.++++.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g------------~v~-~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLG------------SVE-DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCC------------eec-CCcccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 589999999999999999997666543211 000 1124577888999999999999999999999999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHH
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 501 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~ 501 (768)
||||||+.+|...+...+..+|++|+|+|++.+. ..++..++..+...++| +++++||+|+... .++.
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~--------~~~~~~~~~~~~~~~~p-~iivvNK~D~~~~---~~~~ 135 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSGV--------EVGTEKLWEFADEAGIP-RIIFINKMDRERA---DFDK 135 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECCccCCC---CHHH
Confidence 9999999999999999999999999999999874 45778888888889999 7889999998853 3445
Q ss_pred HHHHHhHHH
Q 004202 502 IKVQLGTFL 510 (768)
Q Consensus 502 i~~el~~~l 510 (768)
+.++++..+
T Consensus 136 ~~~~l~~~~ 144 (268)
T cd04170 136 TLAALQEAF 144 (268)
T ss_pred HHHHHHHHh
Confidence 556665554
No 99
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.71 E-value=7.6e-17 Score=146.26 Aligned_cols=101 Identities=36% Similarity=0.526 Sum_probs=94.3
Q ss_pred eeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecc
Q 004202 658 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEF 737 (768)
Q Consensus 658 ~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~ 737 (768)
.++.|+|++.++.++.||..|+++.+|+|+.+++|+|..|.+.+|.++ ..++++++|++|+.+.|+|+|++|+|+++|
T Consensus 2 ~~~~f~a~i~~l~~~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~--~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~ 79 (102)
T cd01513 2 AVDKFVAEIYVLDHPEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERGIVEVELQKPVALETF 79 (102)
T ss_pred cccEEEEEEEEECCCcccCCCCcEEEEeecCEEeEEEEeeeeecccCc--ccccCchhhcCCCEEEEEEEECCceEEEEh
Confidence 357899999999989999999999999999999999999999999874 345678999999999999999999999999
Q ss_pred cccCCcceEEEEeCCcEEEEEEE
Q 004202 738 SNCRALGRAFLRSSGRTIAVGIV 760 (768)
Q Consensus 738 ~~~~~lGRfILR~~g~TvgvG~V 760 (768)
.+++.+|||+||+.|+|+|+|+|
T Consensus 80 ~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 80 SENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred hhCCCcccEEEEeCCCEEEEEEC
Confidence 99999999999999999999986
No 100
>PRK15494 era GTPase Era; Provisional
Probab=99.70 E-value=1.5e-16 Score=174.95 Aligned_cols=148 Identities=25% Similarity=0.350 Sum_probs=102.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+..+|+++|++|+|||||+++|++....+. ....++|.+.....+..++.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~iv------------------------------s~k~~tTr~~~~~~~~~~~~ 100 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIV------------------------------TPKVQTTRSIITGIITLKDT 100 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeec------------------------------cCCCCCccCcEEEEEEeCCe
Confidence 457999999999999999999995322111 12355666665566677888
Q ss_pred EEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 419 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 ~i~lIDTPGh~~--------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
++.||||||..+ +.+.....+..+|++|+|||+..+. .......+..+...+.| .|+|+||+|
T Consensus 101 qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~--------~~~~~~il~~l~~~~~p-~IlViNKiD 171 (339)
T PRK15494 101 QVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSF--------DDITHNILDKLRSLNIV-PIFLLNKID 171 (339)
T ss_pred EEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCC--------CHHHHHHHHHHHhcCCC-EEEEEEhhc
Confidence 999999999743 2233344577899999999987642 22334556666677777 578999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.+ . .... +.+.+.... ....++|+||++|.|+.+
T Consensus 172 l~~--~-~~~~----~~~~l~~~~---~~~~i~~iSAktg~gv~e 206 (339)
T PRK15494 172 IES--K-YLND----IKAFLTENH---PDSLLFPISALSGKNIDG 206 (339)
T ss_pred Ccc--c-cHHH----HHHHHHhcC---CCcEEEEEeccCccCHHH
Confidence 864 2 2222 333332222 224789999999999976
No 101
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.70 E-value=3.3e-16 Score=156.18 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=104.2
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+|+|++|+|||||+++|++.... .......|.|.+...... +
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~--~- 63 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKL-----------------------------ARTSKTPGRTQLINFFEV--N- 63 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCc-----------------------------ccccCCCCcceEEEEEEe--C-
Confidence 35689999999999999999999843100 000112456666554333 2
Q ss_pred eEEEEEeCCCcc----------chHHH---HHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEE
Q 004202 418 YHVVVLDSPGHK----------DFVPN---MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 484 (768)
Q Consensus 418 ~~i~lIDTPGh~----------~f~~~---~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV 484 (768)
..+.||||||+. +|... .+.....+|++|+|+|++.+. ..+..+.+.++...++| +++
T Consensus 64 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~--------~~~~~~~~~~~~~~~~p-vii 134 (179)
T TIGR03598 64 DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPL--------KELDLEMLEWLRERGIP-VLI 134 (179)
T ss_pred CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCC--------CHHHHHHHHHHHHcCCC-EEE
Confidence 379999999952 23222 233334578999999998763 34566667777778888 899
Q ss_pred EEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCc
Q 004202 485 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 533 (768)
Q Consensus 485 VvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI 533 (768)
|+||+|+.. .+.++...+++...++..+ ...++|++||++|+|+
T Consensus 135 v~nK~D~~~--~~~~~~~~~~i~~~l~~~~---~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 135 VLTKADKLK--KSELNKQLKKIKKALKKDA---DDPSVQLFSSLKKTGI 178 (179)
T ss_pred EEECcccCC--HHHHHHHHHHHHHHHhhcc---CCCceEEEECCCCCCC
Confidence 999999975 3445556677777776543 2357899999999997
No 102
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.1e-15 Score=169.36 Aligned_cols=151 Identities=23% Similarity=0.306 Sum_probs=113.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE----
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF---- 413 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~---- 413 (768)
....+|+++||-.||||+|+..|......-.... .+ +-..++|.+..|++||.+|...-..+
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~-----------~e---~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D 191 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKN-----------TE---ADLRYTDTLFYEQERGCSIKSTPVTLVLSD 191 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceecccccccc-----------cc---ccccccccchhhHhcCceEeecceEEEEec
Confidence 3568999999999999999999986543110000 00 11245788999999999997554333
Q ss_pred -eeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004202 414 -DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 414 -~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
..+.+-++|+|||||.+|..++...++.+|+++||||+.+|+ +-++.+.+..+-+...+ ++||+||+|++
T Consensus 192 ~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGV--------mlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 192 SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGV--------MLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCc--------eeeHHHHHHHHHhccCc-EEEEEehhHHH
Confidence 235578999999999999999999999999999999999985 56889998888888888 89999999976
Q ss_pred cc-----ch---hhHHHHHHHHhHHHh
Q 004202 493 QY-----SK---DRFDSIKVQLGTFLR 511 (768)
Q Consensus 493 ~~-----s~---e~~~~i~~el~~~lk 511 (768)
-- .. -++..+..++..++.
T Consensus 263 ilELkLPP~DAY~KLrHii~~iN~~is 289 (971)
T KOG0468|consen 263 ILELKLPPMDAYYKLRHIIDEINNLIS 289 (971)
T ss_pred HHHhcCChHHHHHHHHHHHHHhcchhh
Confidence 31 11 224455566664443
No 103
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.69 E-value=8.2e-17 Score=143.83 Aligned_cols=88 Identities=32% Similarity=0.538 Sum_probs=84.0
Q ss_pred CCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEeccccccccc
Q 004202 566 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVM 644 (768)
Q Consensus 566 ~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~ 644 (768)
++||||+|+++|+++ .|++ ++|+|++|.|++||+|+++|.+..++|++|++++.+++.|.|||+|+|.|++++..+++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~v-v~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~ 80 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTV-PVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIK 80 (91)
T ss_pred CCCeEEEEEEEEEeCCceEE-EEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcC
Confidence 579999999999988 8988 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCC
Q 004202 645 SGGVLCHPDF 654 (768)
Q Consensus 645 rG~VL~~~~~ 654 (768)
+|+|||+++.
T Consensus 81 ~G~vl~~~~~ 90 (91)
T cd03693 81 RGDVAGDSKN 90 (91)
T ss_pred CcCEEccCCC
Confidence 9999999764
No 104
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.69 E-value=2.1e-16 Score=151.72 Aligned_cols=140 Identities=25% Similarity=0.271 Sum_probs=100.8
Q ss_pred EEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEEEE
Q 004202 344 AIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVL 423 (768)
Q Consensus 344 aIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~lI 423 (768)
+++|++|+|||||+++|++.... ..+..+++|.+.....+...+..+.||
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA------------------------------IVEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE------------------------------eecCCCCceeCceeEEEEECCeEEEEE
Confidence 57999999999999999942110 112235677777777777788999999
Q ss_pred eCCCccchHH--------HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 424 DSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 424 DTPGh~~f~~--------~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
||||+.++.. .....+..+|++++|+|+..+. .....+++.++...+.| +++|+||+|+.+..
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--------~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~ 121 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGL--------TPADEEIAKYLRKSKKP-VILVVNKVDNIKEE 121 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccC--------CccHHHHHHHHHhcCCC-EEEEEECcccCChH
Confidence 9999888543 4456678899999999998753 23445566777777887 89999999997632
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ...+...++ .+++++|+++|.|+.+
T Consensus 122 ~~---------~~~~~~~~~----~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 122 DE---------AAEFYSLGF----GEPIPISAEHGRGIGD 148 (157)
T ss_pred HH---------HHHHHhcCC----CCeEEEecccCCCHHH
Confidence 11 112223333 2579999999999976
No 105
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.69 E-value=1.8e-16 Score=156.65 Aligned_cols=154 Identities=22% Similarity=0.241 Sum_probs=98.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|++|+|||||+++|++.. +. ... .|+......+..++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~--~~----------------------------~~~----~t~g~~~~~~~~~~ 57 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGED--ID----------------------------TIS----PTLGFQIKTLEYEG 57 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCC--CC----------------------------CcC----CccccceEEEEECC
Confidence 345899999999999999999998420 00 000 11111222334467
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
..+.||||||++.|...+...+..+|++|+|+|++... .|.....+..+.+......++| ++||+||+|+... .
T Consensus 58 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~--~ 131 (173)
T cd04154 58 YKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRL---RLDDCKRELKELLQEERLAGAT-LLILANKQDLPGA--L 131 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHhChhhcCCC-EEEEEECcccccC--C
Confidence 88999999999988777777888999999999998751 1111111111111111224566 8999999999752 1
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .+++..+++...+....++++++||++|+|+.+
T Consensus 132 ~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 132 S----EEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred C----HHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 1 123333333222333457899999999999976
No 106
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=4.6e-16 Score=178.39 Aligned_cols=152 Identities=19% Similarity=0.230 Sum_probs=109.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++.... .....+|+|.+.....+..++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~------------------------------~~s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS------------------------------VVDDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc------------------------------cccCCCCccCCcceEEEEECCE
Confidence 3589999999999999999999953111 1122478888877777777888
Q ss_pred EEEEEeCCCcc---------chHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEe
Q 004202 419 HVVVLDSPGHK---------DFVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 487 (768)
Q Consensus 419 ~i~lIDTPGh~---------~f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvN 487 (768)
.+.||||||.. ++...+ ...+..+|++|+|+|++.+. ..+....+..+...++| +|||+|
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~--------s~~~~~~~~~~~~~~~p-iIiV~N 330 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPI--------SEQDQRVLSMVIEAGRA-LVLAFN 330 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEE
Confidence 99999999953 333332 34567899999999999874 33555566666667888 899999
Q ss_pred cccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 488 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 488 KmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+|+.+ .+....+..++...+.... ..+++++||++|.|+.+
T Consensus 331 K~Dl~~--~~~~~~~~~~i~~~l~~~~----~~~~~~~SAk~g~gv~~ 372 (472)
T PRK03003 331 KWDLVD--EDRRYYLEREIDRELAQVP----WAPRVNISAKTGRAVDK 372 (472)
T ss_pred CcccCC--hhHHHHHHHHHHHhcccCC----CCCEEEEECCCCCCHHH
Confidence 999975 2223334444444433222 25789999999999976
No 107
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=8.4e-16 Score=150.31 Aligned_cols=152 Identities=19% Similarity=0.223 Sum_probs=97.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.++|+++|+.|+|||||+++|++. .. ..+..+.++.+.....+..++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~--~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG--TF-----------------------------SERQGNTIGVDFTMKTLEIEGKR 51 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC--CC-----------------------------cccCCCccceEEEEEEEEECCEE
Confidence 479999999999999999999842 10 111112223344444455454
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
..+.||||||+++|...+...+..+|++|+|+|++... .|..+ ....+.+......++| +|+|+||+|+....+.
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~---s~~~~-~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~ 126 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRS---SFESV-PHWIEEVEKYGASNVV-LLLIGNKCDLEEQREV 126 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHH---HHHhH-HHHHHHHHHhCCCCCc-EEEEEECccccccccc
Confidence 57899999999999888888888999999999998752 12211 1111122111223566 8999999999753221
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ++...+.+..+ ...++++||++|.|+.+
T Consensus 127 ~~----~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 127 LF----EEACTLAEKNG----MLAVLETSAKESQNVEE 156 (165)
T ss_pred CH----HHHHHHHHHcC----CcEEEEEECCCCCCHHH
Confidence 11 22223333333 24679999999999976
No 108
>PRK00089 era GTPase Era; Reviewed
Probab=99.68 E-value=7.3e-16 Score=165.80 Aligned_cols=150 Identities=21% Similarity=0.232 Sum_probs=101.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+...|+++|++|||||||+|+|++....+.. ..+++|.+.....+..++.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs------------------------------~~~~tt~~~i~~i~~~~~~ 53 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVS------------------------------PKPQTTRHRIRGIVTEDDA 53 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecC------------------------------CCCCcccccEEEEEEcCCc
Confidence 4567999999999999999999964322211 1233444443333444668
Q ss_pred EEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 419 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 ~i~lIDTPGh~~--------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
+++|+||||+.+ +.......+..+|++++|+|++.+. .....+++..+...+.| +++|+||+|
T Consensus 54 qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~--------~~~~~~i~~~l~~~~~p-vilVlNKiD 124 (292)
T PRK00089 54 QIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKI--------GPGDEFILEKLKKVKTP-VILVLNKID 124 (292)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCC--------ChhHHHHHHHHhhcCCC-EEEEEECCc
Confidence 999999999644 2344456778899999999998742 23455566666666777 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+... .+......+.+.. ..+ ..+++++||++|.|+.+
T Consensus 125 l~~~-~~~l~~~~~~l~~---~~~----~~~i~~iSA~~~~gv~~ 161 (292)
T PRK00089 125 LVKD-KEELLPLLEELSE---LMD----FAEIVPISALKGDNVDE 161 (292)
T ss_pred CCCC-HHHHHHHHHHHHh---hCC----CCeEEEecCCCCCCHHH
Confidence 9831 2333333333332 222 34689999999999966
No 109
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.67 E-value=7.2e-16 Score=150.82 Aligned_cols=147 Identities=20% Similarity=0.196 Sum_probs=93.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe-EE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY-HV 420 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~-~i 420 (768)
+|+++|++|+|||||+++|++....+ ...++.|++.....+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI-------------------------------ADYPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc-------------------------------cCCCccccCCcceEEEcCCCCeE
Confidence 69999999999999999998421110 01134455544445555665 89
Q ss_pred EEEeCCCcc-------chHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-----cCCCeEEEEEec
Q 004202 421 VVLDSPGHK-------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNK 488 (768)
Q Consensus 421 ~lIDTPGh~-------~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVVvNK 488 (768)
.||||||+. .+...+++.+..+|++|+|+|++.+. ..+ .+....+..+.. .+.| +++|+||
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~--~~~----~~~~~~~~~l~~~~~~~~~~p-~ivv~NK 123 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD--DPV----EDYKTIRNELELYNPELLEKP-RIVVLNK 123 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC--CHH----HHHHHHHHHHHHhCccccccc-cEEEEEc
Confidence 999999964 23455566677899999999998751 011 112222222222 2456 7899999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+.+. .... ..+..++... ...+++++||++|.|+.+
T Consensus 124 ~Dl~~~--~~~~---~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~ 161 (170)
T cd01898 124 IDLLDE--EELF---ELLKELLKEL----WGKPVFPISALTGEGLDE 161 (170)
T ss_pred hhcCCc--hhhH---HHHHHHHhhC----CCCCEEEEecCCCCCHHH
Confidence 998752 2222 2222233221 135789999999999976
No 110
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.66 E-value=1.4e-15 Score=147.63 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=94.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.++|+++|.+|+|||||++++++... .. +. ..++.+.....+..++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~-----------------------------~~-~~t~~~~~~~~~~~~~~~ 49 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VT-----------------------------DY-DPTIEDSYTKQCEIDGQW 49 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--Cc-----------------------------cc-CCCccceEEEEEEECCEE
Confidence 47999999999999999999985311 00 00 0111111111222333
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
..+.||||||+++|...+...+..+|++|+|+|+++.. .|..+.....+........++| ++||+||+|+......
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~~ 125 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRG---SFEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRKV 125 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhCCCCCC-EEEEeeCcccccccee
Confidence 56889999999999888888889999999999998742 2222111112222222223667 8999999998642111
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .++...+++..+ ++++++||++|.|+.+
T Consensus 126 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 126 S----REEGQELARKLK-----IPYIETSAKDRLNVDK 154 (164)
T ss_pred c----HHHHHHHHHHcC-----CcEEEeeCCCCCCHHH
Confidence 1 122333443333 4789999999999976
No 111
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.66 E-value=1e-15 Score=151.33 Aligned_cols=153 Identities=18% Similarity=0.141 Sum_probs=95.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++|+.|+|||||+++|.... .. ...+.+..+. ..+.....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~--~~------------------------------~~~~t~g~~~--~~~~~~~~ 53 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQ--SV------------------------------TTIPTVGFNV--ETVTYKNV 53 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCC--Cc------------------------------cccCCcccce--EEEEECCE
Confidence 45899999999999999999997310 00 0011111111 22334678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||+.+|...+...+..+|++|+|+|++... .|.....+..+.+......++| ++||.||+|+.+. ..
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~---s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~--~~ 127 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---RIDEARQELHRIINDREMRDAL-LLVFANKQDLPDA--MK 127 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh---hHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC--CC
Confidence 8999999999999887778889999999999998741 1221111111111111123566 8999999998642 11
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+ ++...++........+.++++||++|.|+.+
T Consensus 128 ~~----~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 128 PH----EIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred HH----HHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 12 2333321111122235789999999999966
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.66 E-value=1.2e-15 Score=147.79 Aligned_cols=152 Identities=22% Similarity=0.177 Sum_probs=93.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|..|+|||||+++|+....... ......|.+ ...+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~----------------------------~~~~t~g~~----~~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ----------------------------IIVPTVGFN----VESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc----------------------------eecCccccc----eEEEEECCEEEE
Confidence 589999999999999999984210000 000111222 223445788899
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHH--HHHcCCCeEEEEEecccccccchhhH
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL--IRSFGVDQLIVAVNKMDAVQYSKDRF 499 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~l--l~~lgip~iIVVvNKmDlv~~s~e~~ 499 (768)
||||||+.+|...+...+..+|++|+|+|++... .+.....+..+.+.. +...++| +++|+||+|+.+. ...
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~--~~~ 122 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRL---RLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDA--LTA 122 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHH---HHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCC--CCH
Confidence 9999999999888888889999999999998742 111111111111111 0113577 8999999998752 111
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 500 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 500 ~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.++ ...+....+....++++++||++|.|+.+
T Consensus 123 ~~~----~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 123 VKI----TQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred HHH----HHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 222 22221111111235689999999999976
No 113
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.66 E-value=6.7e-16 Score=148.79 Aligned_cols=139 Identities=20% Similarity=0.253 Sum_probs=95.2
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEEEEe
Q 004202 345 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 424 (768)
Q Consensus 345 IvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~lID 424 (768)
++|++|+|||||+++|++... .....+|+|++.....+.+++..+.|||
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-------------------------------KVGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-------------------------------cccCCCCcccccceEEEeeCCeEEEEEE
Confidence 589999999999999984210 1112367788777777777888999999
Q ss_pred CCCccchHHH------HHHhc--ccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 425 SPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 425 TPGh~~f~~~------~i~g~--~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
|||+.+|... +...+ ..+|++|+|+|+.... +....+..+...++| +|+|+||+|+.+..
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~----------~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~- 117 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE----------RNLYLTLQLLELGLP-VVVALNMIDEAEKR- 117 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch----------hHHHHHHHHHHcCCC-EEEEEehhhhcccc-
Confidence 9998876431 22233 4899999999998631 222333445567887 89999999997531
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .....+.+.++ .+++++||++|.|+.+
T Consensus 118 -~~~---~~~~~~~~~~~-----~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 118 -GIK---IDLDKLSELLG-----VPVVPTSARKGEGIDE 147 (158)
T ss_pred -cch---hhHHHHHHhhC-----CCeEEEEccCCCCHHH
Confidence 111 11222222223 4789999999999965
No 114
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.66 E-value=8.7e-16 Score=173.76 Aligned_cols=142 Identities=25% Similarity=0.295 Sum_probs=108.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|++|+|||||+|+|++....+ .+..+|+|.+.....+.+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VSDTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce------------------------------ecCCCCcccCceEEEEEECCeEEE
Confidence 48999999999999999999532211 122378888888888888999999
Q ss_pred EEeCCCc--------cchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004202 422 VLDSPGH--------KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 422 lIDTPGh--------~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
||||||+ ..+...+..++..+|++|+|+|+..+. .....+.+.+++..+.| +|+|+||+|+..
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~--------~~~d~~i~~~l~~~~~p-iilVvNK~D~~~ 121 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGL--------TPEDEEIAKWLRKSGKP-VILVANKIDGKK 121 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHhCCC-EEEEEECccCCc
Confidence 9999996 445566677888999999999999873 45666777888888888 899999999875
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... ..+ +..+++. +++++||.+|.|+.+
T Consensus 122 ~~~~-----~~~----~~~lg~~----~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 122 EDAV-----AAE----FYSLGFG----EPIPISAEHGRGIGD 150 (429)
T ss_pred cccc-----HHH----HHhcCCC----CeEEEeCCcCCChHH
Confidence 2211 111 2234542 579999999999966
No 115
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.65 E-value=2.1e-15 Score=147.35 Aligned_cols=147 Identities=22% Similarity=0.252 Sum_probs=92.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|++|+|||||+++|++... .....++.|.......+..++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-------------------------------EVAPYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------ccCCCCCcccceeEEEEccCceEE
Confidence 4799999999999999999984211 011124556666666666677899
Q ss_pred EEEeCCCccc-------hH-HHHHHh-cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecc
Q 004202 421 VVLDSPGHKD-------FV-PNMISG-ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKM 489 (768)
Q Consensus 421 ~lIDTPGh~~-------f~-~~~i~g-~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKm 489 (768)
+||||||+.+ ++ ...+.. ...+|++|+|+|++... ++. . ....+.+..+... ++| +|+|+||+
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~---~~~-~-~~~~~~~~~l~~~~~~~p-vilv~NK~ 123 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETC---GYS-L-EEQLSLFEEIKPLFKNKP-VIVVLNKI 123 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCccc---ccc-h-HHHHHHHHHHHhhcCcCC-eEEEEEcc
Confidence 9999999742 11 111222 23479999999998642 110 0 1112233333333 566 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+... ....+ ...+.+. ...+++++||++|.|+.+
T Consensus 124 Dl~~~--~~~~~----~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 124 DLLTF--EDLSE----IEEEEEL-----EGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCch--hhHHH----HHHhhhh-----ccCceEEEEecccCCHHH
Confidence 99752 22222 2222211 235789999999999976
No 116
>COG2262 HflX GTPases [General function prediction only]
Probab=99.65 E-value=1.6e-16 Score=172.92 Aligned_cols=182 Identities=18% Similarity=0.161 Sum_probs=129.2
Q ss_pred ccccccccCCCCCccccccccccccCcccccCCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHH
Q 004202 299 NMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKE 378 (768)
Q Consensus 299 ~l~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~ 378 (768)
+++.+++..+.++..++++++.+...++.. ++.+.....+.|+++|++|||||||+|+|++. .....++
T Consensus 154 ~lE~drR~ir~rI~~i~~eLe~v~~~R~~~---R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~-~~~~~d~------- 222 (411)
T COG2262 154 QLETDRRRIRRRIAKLKRELENVEKAREPR---RKKRSRSGIPLVALVGYTNAGKSTLFNALTGA-DVYVADQ------- 222 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhcccCCCeEEEEeeccccHHHHHHHHhcc-Ceecccc-------
Confidence 345556666667777778887777777644 33344457789999999999999999999942 2222222
Q ss_pred HhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-CeEEEEEeCCCccc--------hHHHHHHhcccCCEEEEEE
Q 004202 379 AKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVLDSPGHKD--------FVPNMISGATQSDAAILVI 449 (768)
Q Consensus 379 a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-~~~i~lIDTPGh~~--------f~~~~i~g~~~aD~aILVV 449 (768)
--.|.+...+.+.+. ++.+.|.||.|+.+ .++.++..+..||++|+||
T Consensus 223 -----------------------LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVV 279 (411)
T COG2262 223 -----------------------LFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVV 279 (411)
T ss_pred -----------------------ccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEe
Confidence 224888888888876 68999999999554 5677888899999999999
Q ss_pred ecCCCccccccccchhhhHHHHHHHHHcCC--CeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeec
Q 004202 450 DASVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA 527 (768)
Q Consensus 450 DA~~g~~e~~~~~~~~qt~e~l~ll~~lgi--p~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA 527 (768)
||+++.. ..+......++..+|+ +++|+|+||+|++.. .+. ...+... .. ..|++||
T Consensus 280 DaSdp~~-------~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~-~~~----~~~~~~~--------~~-~~v~iSA 338 (411)
T COG2262 280 DASDPEI-------LEKLEAVEDVLAEIGADEIPIILVLNKIDLLED-EEI----LAELERG--------SP-NPVFISA 338 (411)
T ss_pred ecCChhH-------HHHHHHHHHHHHHcCCCCCCEEEEEecccccCc-hhh----hhhhhhc--------CC-CeEEEEe
Confidence 9998742 3555666666666543 238999999998863 211 1111111 11 4699999
Q ss_pred ccCCCccc
Q 004202 528 LENQNLVT 535 (768)
Q Consensus 528 ~tG~gI~e 535 (768)
++|.|+..
T Consensus 339 ~~~~gl~~ 346 (411)
T COG2262 339 KTGEGLDL 346 (411)
T ss_pred ccCcCHHH
Confidence 99999965
No 117
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.65 E-value=1.1e-15 Score=144.74 Aligned_cols=150 Identities=24% Similarity=0.289 Sum_probs=96.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
+||+++|++|+|||||+++|+... ...+..+++|.+.....+..++ .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-------------------------------FITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-------------------------------CcCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999998421 1223345677777666566666 7
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCcccccccc-chhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT-AKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~-~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
.+.+|||||+.++..........++.++.++|....+. .+.. ...+.......+.. ++| ++||+||+|+....
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~--~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-- 124 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVL--DVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-- 124 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeeh--hhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch--
Confidence 89999999999985554444445555555555443210 0110 11233333333332 677 89999999997532
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+..++...+...+. .+++++||.+|.|+.+
T Consensus 125 ----~~~~~~~~~~~~~~----~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 125 ----LKTHVAFLFAKLNG----EPIIPLSAETGKNIDS 154 (161)
T ss_pred ----hhHHHHHHHhhccC----CceEEeecCCCCCHHH
Confidence 23344444444432 4689999999999965
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.65 E-value=1.1e-15 Score=148.46 Aligned_cols=146 Identities=25% Similarity=0.288 Sum_probs=93.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|+.++|||||+++|.... .. .. .+ |+......+...+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~~-------------------------~~-----~~--t~~~~~~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--VV-------------------------TT-----IP--TIGFNVETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--Cc-------------------------Cc-----CC--ccCcCeEEEEECCEEEE
Confidence 58999999999999999997321 00 00 01 11111223445678899
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH-HHHHH---cCCCeEEEEEecccccccchh
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRS---FGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l-~ll~~---lgip~iIVVvNKmDlv~~s~e 497 (768)
||||||+.+|...+...+..+|++|+|+|++... .+ ....+.+ .++.. .++| +++|+||+|+.+..
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~----~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~-- 116 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD---RL----GTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL-- 116 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH---HH----HHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC--
Confidence 9999999999887888889999999999998641 11 1112222 22221 3566 89999999987421
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...++...+. ...+.....+++++||++|.|+.+
T Consensus 117 ~~~~i~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 117 SEAEISEKLG----LSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred CHHHHHHHhC----ccccCCCcEEEEEeeccCCCCHHH
Confidence 1222222221 111122235799999999999976
No 119
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.65 E-value=2e-15 Score=144.74 Aligned_cols=137 Identities=25% Similarity=0.269 Sum_probs=96.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|++|+|||||+++|++..... ....+++|.+.....+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI------------------------------VSDIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe------------------------------ccCCCCCccceEEEEEEeCCEEE
Confidence 479999999999999999998431110 01125677777666777788899
Q ss_pred EEEeCCCccchHH--------HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-HcCCCeEEEEEecccc
Q 004202 421 VVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDA 491 (768)
Q Consensus 421 ~lIDTPGh~~f~~--------~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~-~lgip~iIVVvNKmDl 491 (768)
++|||||+.++.. .+...+..+|++++|+|++... +...+..+. ..+.| +++|+||+|+
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~-----------~~~~~~~~~~~~~~~-vi~v~nK~D~ 119 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGL-----------DEEDLEILELPADKP-IIVVLNKSDL 119 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCC-----------CHHHHHHHHhhcCCC-EEEEEEchhc
Confidence 9999999876532 2445677899999999999642 222233333 34566 8999999999
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+. ... . ......+++++||+++.|+.+
T Consensus 120 ~~~--~~~---------~-----~~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 120 LPD--SEL---------L-----SLLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred CCc--ccc---------c-----cccCCCceEEEECCCCCCHHH
Confidence 852 111 1 111245789999999999965
No 120
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.64 E-value=5e-15 Score=143.56 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=99.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--eE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--YH 419 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~~ 419 (768)
+|+++|++++|||||+++|++.. ...+..++++.+.....+..++ ..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-------------------------------FDNQYQATIGIDFLSKTMYLEDKTVR 50 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-------------------------------CCccCCCceeeeEEEEEEEECCEEEE
Confidence 79999999999999999998421 1112335566666665555554 46
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHH-HHHcC--CCeEEEEEecccccccch
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IRSFG--VDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~l-l~~lg--ip~iIVVvNKmDlv~~s~ 496 (768)
+.||||||+.+|.......+..+|++|+|+|++.+. +|. .....+.. ....+ +| +++|+||+|+.....
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~ 122 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQ---SFD----NTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQ 122 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhCCCCCE-EEEEEEChhccccCc
Confidence 899999999999888888889999999999998742 121 12222222 22333 66 999999999964211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... ++...+.+.. .++++++||++|.|+.+
T Consensus 123 ~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 123 VST----EEGEKKAKEL-----NAMFIETSAKAGHNVKE 152 (161)
T ss_pred cCH----HHHHHHHHHh-----CCEEEEEeCCCCCCHHH
Confidence 111 2222222222 25789999999999976
No 121
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.64 E-value=2.4e-15 Score=147.16 Aligned_cols=147 Identities=19% Similarity=0.209 Sum_probs=93.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|..++|||||+++|... ... . ..+.+..+ ...+......+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~--~~~-------------------------~-----~~pt~g~~--~~~~~~~~~~~ 46 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLG--EIV-------------------------T-----TIPTIGFN--VETVEYKNISF 46 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCc-------------------------c-----cCCCCCcc--eEEEEECCEEE
Confidence 37999999999999999999721 100 0 00111111 12334467889
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH-HHHHH---cCCCeEEEEEecccccccch
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRS---FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l-~ll~~---lgip~iIVVvNKmDlv~~s~ 496 (768)
.||||||+.+|...+...+..+|++|+|+|++... .|+ +..+.+ .++.. ...| ++||.||+|+.+...
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~~----~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~ 118 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE---RIG----EAREELQRMLNEDELRDAV-LLVFANKQDLPNAMS 118 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HHH----HHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCC
Confidence 99999999999888888889999999999998631 122 222222 22221 2355 899999999864211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+++...+ ....+....+.++++||++|+|+.+
T Consensus 119 --~~~i~~~~----~~~~~~~~~~~~~~~Sak~g~gv~~ 151 (159)
T cd04150 119 --AAEVTDKL----GLHSLRNRNWYIQATCATSGDGLYE 151 (159)
T ss_pred --HHHHHHHh----CccccCCCCEEEEEeeCCCCCCHHH
Confidence 12222222 1111222345678999999999976
No 122
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.64 E-value=3.9e-15 Score=144.50 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=95.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--eCCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~--~~~~ 418 (768)
++|+++|++++|||||+++|++.. ...+..+.++.+.....+. ....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~~ 49 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGR-------------------------------FVSKYLPTIGIDYGVKKVSVRNKEV 49 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-------------------------------CCCCCCCccceeEEEEEEEECCeEE
Confidence 489999999999999999998421 0111123333333333333 3346
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEeccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv~~ 494 (768)
.+.||||||+.+|...+...+..+|++|+|+|+++.. .++.+..+..+....... .+.| +++|+||+|+.+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 125 (168)
T cd04119 50 RVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQ---SFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKH 125 (168)
T ss_pred EEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHH---HHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhcccc
Confidence 7889999999998887777888999999999998742 222221222222222211 2344 8999999998731
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... ..+...+....+ ++++++||++|.|+.+
T Consensus 126 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 126 RAVS----EDEGRLWAESKG-----FKYFETSACTGEGVNE 157 (168)
T ss_pred cccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 1111 112222333322 4689999999999976
No 123
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.64 E-value=3.6e-15 Score=145.96 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=94.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
++|+++|++|+|||||+++|++..- .....+.++.+.....+...+ .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVTVDDKLV 49 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CcCcCCccceEEEEEEEEECCEEE
Confidence 4899999999999999999984210 000111122222223333443 4
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH---HcCCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVVvNKmDlv~~s 495 (768)
.+.|||+||+..|.......++.+|++|+|+|++.+. .++.......+.+..+. ..++| +++|+||+|+....
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 125 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPK---SFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKR 125 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCccCCCCce-EEEEEECccccccc
Confidence 5679999999999888888899999999999998752 11111111111111111 11566 89999999997421
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... +++..+++..+ .++++++||++|.|+.+
T Consensus 126 ~~~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~ 157 (172)
T cd01862 126 QVST----KKAQQWCQSNG----NIPYFETSAKEAINVEQ 157 (172)
T ss_pred ccCH----HHHHHHHHHcC----CceEEEEECCCCCCHHH
Confidence 1111 22333443333 35789999999999965
No 124
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.64 E-value=3.4e-15 Score=144.09 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=93.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--Ce
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~ 418 (768)
++|+++|.+|+|||||+++|++.. ... +. ..++.+.....+..+ ..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~--~~~-----------------------------~~-~~t~~~~~~~~~~~~~~~~ 49 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH--FVD-----------------------------EY-DPTIEDSYRKQVVIDGETC 49 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CcC-----------------------------Cc-CCcchheEEEEEEECCEEE
Confidence 589999999999999999999421 000 00 001111111122223 34
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||+++|...+...+..+|++++|+|.+... .|..+..+..+........++| ++||.||+|+... ...
T Consensus 50 ~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~-~~~ 124 (162)
T cd04138 50 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK---SFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAAR-TVS 124 (162)
T ss_pred EEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc-eec
Confidence 5778999999999888888889999999999998632 2222111222222222223566 8999999998752 111
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..++..+.+..+ ++++++||++|.|+.+
T Consensus 125 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 125 ----SRQGQDLAKSYG-----IPYIETSAKTRQGVEE 152 (162)
T ss_pred ----HHHHHHHHHHhC-----CeEEEecCCCCCCHHH
Confidence 122333333333 4789999999999976
No 125
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=2.1e-15 Score=172.93 Aligned_cols=144 Identities=27% Similarity=0.318 Sum_probs=104.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
.++|+|+|.+|+|||||+++|++.... .....+|+|.+.....+.+.+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~------------------------------~v~~~~gvT~d~~~~~~~~~~~~ 87 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREA------------------------------VVEDVPGVTRDRVSYDAEWNGRR 87 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcc------------------------------cccCCCCCCEeeEEEEEEECCcE
Confidence 378999999999999999999953211 11234788988888888888999
Q ss_pred EEEEeCCCccc--------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004202 420 VVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 420 i~lIDTPGh~~--------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
+.||||||+.. +...+..++..||++|+|+|++.+. .....+.+.++...++| +|+|+||+|+
T Consensus 88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~--------s~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGA--------TATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 99999999763 3344556778899999999999863 22345556666777888 8999999998
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.....+ ... +...++. ..+++||++|.|+.+
T Consensus 159 ~~~~~~--------~~~-~~~~g~~----~~~~iSA~~g~gi~e 189 (472)
T PRK03003 159 ERGEAD--------AAA-LWSLGLG----EPHPVSALHGRGVGD 189 (472)
T ss_pred Cccchh--------hHH-HHhcCCC----CeEEEEcCCCCCcHH
Confidence 642111 111 1123443 237999999999976
No 126
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.63 E-value=8.3e-15 Score=143.27 Aligned_cols=144 Identities=23% Similarity=0.256 Sum_probs=93.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhcc--CeEEEEEEEEEeeCCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER--GITMTVAVAYFDSKNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~--GiTid~~~~~~~~~~~ 418 (768)
++|+++|..|+|||||+++|+... ......+ +.++......+.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG-------------------------------YEPQQLSTYALTLYKHNAKFEGKTI 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-------------------------------CCCCcCCceeeEEEEEEEEECCEEE
Confidence 489999999999999999998421 0111111 2222222222333446
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecccccccch
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~~s~ 496 (768)
.+.||||||+++|...+...+..+|++|+|+|++.+. .++ ...+.+..+... ++| ++||+||+|+...
T Consensus 50 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~-- 119 (161)
T cd04124 50 LVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKI---TYK----NLSKWYEELREYRPEIP-CIVVANKIDLDPS-- 119 (161)
T ss_pred EEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhCCCCc-EEEEEECccCchh--
Confidence 7889999999999888888899999999999998752 111 122333333333 566 8999999998531
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ..+...+.+.. .++++++||++|.|+.+
T Consensus 120 -~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 120 -V----TQKKFNFAEKH-----NLPLYYVSAADGTNVVK 148 (161)
T ss_pred -H----HHHHHHHHHHc-----CCeEEEEeCCCCCCHHH
Confidence 1 11122222222 25789999999999976
No 127
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.63 E-value=7.4e-16 Score=135.27 Aligned_cols=83 Identities=41% Similarity=0.682 Sum_probs=79.2
Q ss_pred CceeeeEeEEeeCCCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCc
Q 004202 568 PLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 647 (768)
Q Consensus 568 plr~~I~dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~ 647 (768)
||+|+|+++|+++.|++ ++|+|++|+|++||+|.++|++..++|++|++++.++++|.|||+|+|+|++++..++++|+
T Consensus 1 p~r~~V~~v~~~~~g~v-v~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~ 79 (83)
T cd03698 1 PFRLPISDKYKDQGGTV-VSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGD 79 (83)
T ss_pred CeEEEEEeEEEcCCCcE-EEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCC
Confidence 79999999998777887 89999999999999999999999999999999999999999999999999999989999999
Q ss_pred cccc
Q 004202 648 VLCH 651 (768)
Q Consensus 648 VL~~ 651 (768)
+|++
T Consensus 80 vl~~ 83 (83)
T cd03698 80 VLCS 83 (83)
T ss_pred EEeC
Confidence 9974
No 128
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.63 E-value=7.4e-15 Score=142.51 Aligned_cols=149 Identities=13% Similarity=0.198 Sum_probs=95.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee----C
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS----K 416 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~----~ 416 (768)
++|+++|..++|||||+++|++..- ..+..+.++.+.....+.. .
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF-------------------------------TKDYKKTIGVDFLEKQIFLRQSDE 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCcEEEEEEEEEEEEcCCCC
Confidence 4799999999999999999984210 0111133333333233332 3
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
...+.||||||+++|...+...++.+|++++|+|++... .++.+..+. +.+. ....++| +|+|+||+|+.....
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~---s~~~l~~~~-~~~~-~~~~~~p-~iiv~nK~Dl~~~~~ 123 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRE---SFEAIESWK-EKVE-AECGDIP-MVLVQTKIDLLDQAV 123 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHH---HHHHHHHHH-HHHH-HhCCCCC-EEEEEEChhcccccC
Confidence 467999999999999888888899999999999998742 222211111 1111 1123677 899999999975211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
-.. ++...+.+.++ ++++++||++|.|+.+
T Consensus 124 v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 124 ITN----EEAEALAKRLQ-----LPLFRTSVKDDFNVTE 153 (162)
T ss_pred CCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 111 22333343444 4789999999999966
No 129
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.63 E-value=4.5e-16 Score=171.69 Aligned_cols=143 Identities=20% Similarity=0.221 Sum_probs=97.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-CC
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KN 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-~~ 417 (768)
..++|+++|++|+|||||+|+|++.. .+ .....+.|++.....+.. ++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~------------------------------v~~~~~tT~d~~~~~i~~~~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VY------------------------------AADQLFATLDPTTRRLDLPDG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-ee------------------------------eccCCccccCCEEEEEEeCCC
Confidence 44899999999999999999999531 11 112256677777777776 56
Q ss_pred eEEEEEeCCCc-cc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEE
Q 004202 418 YHVVVLDSPGH-KD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAV 486 (768)
Q Consensus 418 ~~i~lIDTPGh-~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVv 486 (768)
..+.||||||. .+ -+..++..+..||++|+|+|++++... .+......++..+ +.| +|+|+
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~-------~~~~~~~~~L~~l~~~~~p-iIlV~ 308 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE-------EQIEAVEKVLEELGAEDIP-QLLVY 308 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH-------HHHHHHHHHHHHhccCCCC-EEEEE
Confidence 89999999997 21 234456678899999999999876321 1222223344444 456 89999
Q ss_pred ecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 487 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
||+|+.+ .+... .... . ..+++++||++|.|+.+
T Consensus 309 NK~Dl~~--~~~v~-------~~~~--~----~~~~i~iSAktg~GI~e 342 (351)
T TIGR03156 309 NKIDLLD--EPRIE-------RLEE--G----YPEAVFVSAKTGEGLDL 342 (351)
T ss_pred EeecCCC--hHhHH-------HHHh--C----CCCEEEEEccCCCCHHH
Confidence 9999974 22111 1111 1 13579999999999966
No 130
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.63 E-value=3.1e-15 Score=148.46 Aligned_cols=149 Identities=23% Similarity=0.227 Sum_probs=96.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
..+|+++|+.|+|||||+++|+... .. . ...|+......+..++..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~--~~------------------------------~--~~~t~~~~~~~~~~~~~~ 60 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE--VV------------------------------H--TSPTIGSNVEEIVYKNIR 60 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--CC------------------------------C--cCCccccceEEEEECCeE
Confidence 4789999999999999999998321 00 0 011222223345556789
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccch
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s~ 496 (768)
+.||||||+..|...+...+..+|++|+|+|++... .+.. ...+...++.. .++| ++|++||+|+.+.
T Consensus 61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~---~~~~---~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~-- 131 (174)
T cd04153 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE---RLPL---TKEELYKMLAHEDLRKAV-LLVLANKQDLKGA-- 131 (174)
T ss_pred EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHH---HHHH---HHHHHHHHHhchhhcCCC-EEEEEECCCCCCC--
Confidence 999999999999888888889999999999998742 1111 11122222222 2466 8999999998642
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+++.+.+. ........++++++||++|+|+.+
T Consensus 132 ~~~~~i~~~l~----~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 132 MTPAEISESLG----LTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred CCHHHHHHHhC----cccccCCceEEEecccCCCCCHHH
Confidence 11222222222 111112345789999999999976
No 131
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.63 E-value=9.6e-15 Score=141.60 Aligned_cols=147 Identities=19% Similarity=0.229 Sum_probs=96.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
+||+++|++|+|||||+++|++..- .....+.++.+.....+...+ .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 49 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-------------------------------SEQYKSTIGVDFKTKTIEVDGKRV 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCceeeEEEEEEEEECCEEE
Confidence 4899999999999999999984210 111123334444444445544 5
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.|||+||+.+|.......+..+|++|+|+|+++.. .++. ....+..+.. .++| +++|+||+|+....
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~----~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~ 121 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRE---SFEN----LKNWLKELREYADPNVV-IMLVGNKSDLEDQR 121 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHH---HHHH----HHHHHHHHHHhCCCCCe-EEEEEEchhccccc
Confidence 7889999999999888888889999999999998742 1111 1111112211 2466 89999999987521
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
....+ ....+.+..+ ++++++||.+|.|+.+
T Consensus 122 ~~~~~----~~~~~~~~~~-----~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 122 QVSRE----EAEAFAEEHG-----LPFFETSAKTNTNVEE 152 (164)
T ss_pred CCCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 11111 2222333333 4689999999999966
No 132
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.63 E-value=1e-14 Score=140.12 Aligned_cols=150 Identities=23% Similarity=0.256 Sum_probs=98.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...+|+++|.+|+|||||+++|++....+. .....++.......+...+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 51 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIV------------------------------SPKPQTTRNRIRGIYTDDDA 51 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEec------------------------------cCCCCceeceEEEEEEcCCe
Confidence 357899999999999999999985321110 01122333333333445668
Q ss_pred EEEEEeCCCccch--------HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 419 HVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 ~i~lIDTPGh~~f--------~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.+.||||||.... .......+..+|++++|+|+..+. .......+..+...+.| +++|+||+|
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~--------~~~~~~~~~~~~~~~~~-~iiv~nK~D 122 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI--------GEGDEFILELLKKSKTP-VILVLNKID 122 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc--------CchHHHHHHHHHHhCCC-EEEEEEchh
Confidence 8999999996542 233455678899999999999752 12344455556666777 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+... .+...+....+... . ...+++++|++++.|+.+
T Consensus 123 l~~~-~~~~~~~~~~~~~~---~----~~~~~~~~s~~~~~~~~~ 159 (168)
T cd04163 123 LVKD-KEDLLPLLEKLKEL---G----PFAEIFPISALKGENVDE 159 (168)
T ss_pred cccc-HHHHHHHHHHHHhc---c----CCCceEEEEeccCCChHH
Confidence 9742 33333333333322 1 135789999999999965
No 133
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2e-15 Score=167.12 Aligned_cols=144 Identities=22% Similarity=0.210 Sum_probs=108.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+|+|.||+|||||+|+|++...+|..+. +|+|.|+-...+..+|
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI------------------------------~GTTRDviee~i~i~G 264 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDI------------------------------AGTTRDVIEEDINLNG 264 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCC------------------------------CCCccceEEEEEEECC
Confidence 4578999999999999999999998766665443 8999999999999999
Q ss_pred eEEEEEeCCCccc---h-----HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004202 418 YHVVVLDSPGHKD---F-----VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 418 ~~i~lIDTPGh~~---f-----~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
..+.|+||+|.++ . +......+..||++++|+|++.+. ..+....+. +...+.| +++|+||+
T Consensus 265 ~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~--------~~~d~~~~~-~~~~~~~-~i~v~NK~ 334 (454)
T COG0486 265 IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPL--------DKEDLALIE-LLPKKKP-IIVVLNKA 334 (454)
T ss_pred EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCC--------chhhHHHHH-hcccCCC-EEEEEech
Confidence 9999999999554 2 334466678899999999999852 223333433 2334455 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+...... ..+ .. ....+++.+|+++|+|+..
T Consensus 335 DL~~~~~~------~~~-~~-------~~~~~~i~iSa~t~~Gl~~ 366 (454)
T COG0486 335 DLVSKIEL------ESE-KL-------ANGDAIISISAKTGEGLDA 366 (454)
T ss_pred hccccccc------chh-hc-------cCCCceEEEEecCccCHHH
Confidence 99863220 011 10 1234689999999999976
No 134
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.62 E-value=3.2e-15 Score=179.21 Aligned_cols=151 Identities=19% Similarity=0.189 Sum_probs=108.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
.++|+++|++|+|||||+++|++....+ ....+|+|.+.....+..++..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~------------------------------v~~~~gtT~d~~~~~~~~~~~~ 499 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAV------------------------------VNDLAGTTRDPVDEIVEIDGED 499 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccc------------------------------cCCCCCCCcCcceeEEEECCCE
Confidence 4799999999999999999999532111 1123778888777777778889
Q ss_pred EEEEeCCCcc---------chHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec
Q 004202 420 VVVLDSPGHK---------DFVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 488 (768)
Q Consensus 420 i~lIDTPGh~---------~f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK 488 (768)
+.||||||+. +|...+ ...+..+|++|+|+|++.+. ..+....+..+...++| +|||+||
T Consensus 500 ~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~--------s~~~~~i~~~~~~~~~p-iIiV~NK 570 (712)
T PRK09518 500 WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPI--------SEQDLKVMSMAVDAGRA-LVLVFNK 570 (712)
T ss_pred EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEEc
Confidence 9999999963 233332 34567899999999999874 34666666666677888 8999999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+.+ .+..+.+..++...+... ...+++++||++|.|+.+
T Consensus 571 ~DL~~--~~~~~~~~~~~~~~l~~~----~~~~ii~iSAktg~gv~~ 611 (712)
T PRK09518 571 WDLMD--EFRRQRLERLWKTEFDRV----TWARRVNLSAKTGWHTNR 611 (712)
T ss_pred hhcCC--hhHHHHHHHHHHHhccCC----CCCCEEEEECCCCCCHHH
Confidence 99975 233333444444333222 235779999999999976
No 135
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=3.6e-15 Score=151.52 Aligned_cols=152 Identities=18% Similarity=0.244 Sum_probs=97.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee---CC
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---KN 417 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~---~~ 417 (768)
++|+++|..|+|||||+++|++.. . .....+.+..+.....+.. ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~--~-----------------------------~~~~~~t~~~d~~~~~v~~~~~~~ 49 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI--F-----------------------------SQHYKATIGVDFALKVIEWDPNTV 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--C-----------------------------CCCCCCceeEEEEEEEEEECCCCE
Confidence 479999999999999999998421 0 0111133333333333333 34
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH---HcCCCeEEEEEeccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|...+...+..+|++|+|+|.+... .|+.+..+..+....+. ..++| +|||.||+|+.+.
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~---s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~ 125 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPS---TFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKR 125 (201)
T ss_pred EEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCcccc
Confidence 67889999999999888888889999999999998742 22222111111111111 13566 8999999999631
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... ..+++..+++..++ .+++++||++|.|+.+
T Consensus 126 ~~~----~~~~~~~~~~~~~~----~~~~e~Sak~~~~v~e 158 (201)
T cd04107 126 LAK----DGEQMDQFCKENGF----IGWFETSAKEGINIEE 158 (201)
T ss_pred ccc----CHHHHHHHHHHcCC----ceEEEEeCCCCCCHHH
Confidence 111 12334444444442 4789999999999976
No 136
>PRK04213 GTP-binding protein; Provisional
Probab=99.62 E-value=5.4e-15 Score=149.71 Aligned_cols=153 Identities=22% Similarity=0.249 Sum_probs=94.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++.. ......+|+|.+..... ..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-------------------------------~~~~~~~~~t~~~~~~~--~~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-------------------------------VRVGKRPGVTRKPNHYD--WG-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-------------------------------CccCCCCceeeCceEEe--ec--
Confidence 35799999999999999999998421 11123357777654332 22
Q ss_pred EEEEEeCCCc-----------cchHHHHH----HhcccCCEEEEEEecCCCcc-ccccc--cchhhhHHHHHHHHHcCCC
Q 004202 419 HVVVLDSPGH-----------KDFVPNMI----SGATQSDAAILVIDASVGSF-EVGMN--TAKGLTREHAQLIRSFGVD 480 (768)
Q Consensus 419 ~i~lIDTPGh-----------~~f~~~~i----~g~~~aD~aILVVDA~~g~~-e~~~~--~~~~qt~e~l~ll~~lgip 480 (768)
.+.||||||+ +.|...+. .++..+|++++|+|+....- ...+. +...+..+++..+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 6899999994 33433322 24456789999999864210 00000 0112345666666677888
Q ss_pred eEEEEEecccccccchhhHHHHHHHHhHHHhhcCCC----CCCCcEEEeecccCCCccc
Q 004202 481 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK----DASLTWIPLSALENQNLVT 535 (768)
Q Consensus 481 ~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~----~~~i~~IpVSA~tG~gI~e 535 (768)
++||+||+|+.+...+ ...++... +++. ....+++++||++| |+.+
T Consensus 133 -~iiv~NK~Dl~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~SA~~g-gi~~ 182 (201)
T PRK04213 133 -PIVAVNKMDKIKNRDE----VLDEIAER---LGLYPPWRQWQDIIAPISAKKG-GIEE 182 (201)
T ss_pred -eEEEEECccccCcHHH----HHHHHHHH---hcCCccccccCCcEEEEecccC-CHHH
Confidence 8999999999753211 22233222 2321 11236899999999 9976
No 137
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.62 E-value=4.5e-15 Score=144.48 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=92.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEE--EEEEeeCCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA--VAYFDSKNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~--~~~~~~~~~ 418 (768)
.+|+++|.+|+|||||+++|++..-. .. ..+. +.+.. ...+.....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~--~~-----------------------------~~~t-~~~~~~~~~~~~~~~~ 48 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV--DD-----------------------------YDPT-IEDSYRKQIEIDGEVC 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cc-----------------------------cCCc-hhhhEEEEEEECCEEE
Confidence 37999999999999999999853110 00 0000 10111 111222345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||+++|.......+..+|++|+|+|++... .|+.+..+............+| +|+|.||+|+.......
T Consensus 49 ~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~ 124 (164)
T smart00173 49 LLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQ---SFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVS 124 (164)
T ss_pred EEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEc
Confidence 7889999999999888888889999999999998742 1222111111122211223566 89999999987521111
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..+...+.+..+ ++++++||++|.|+.+
T Consensus 125 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 125 ----TEEGKELARQWG-----CPFLETSAKERVNVDE 152 (164)
T ss_pred ----HHHHHHHHHHcC-----CEEEEeecCCCCCHHH
Confidence 112223333322 5789999999999976
No 138
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.62 E-value=7.4e-15 Score=142.72 Aligned_cols=147 Identities=20% Similarity=0.234 Sum_probs=96.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--Ce
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~ 418 (768)
+||+++|+.++|||||+++|++..- ..+..+..+.+.....+..+ ..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF-------------------------------KEDSQHTIGVEFGSKIIRVGGKRV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCceeeeEEEEEEEECCEEE
Confidence 4899999999999999999984211 01111223333333333333 35
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH---HcCCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+.+|.......+..+|++|+|+|++++. .+. .....+..+. ..++| ++||.||+|+....
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~ 121 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRT---SFE----ALPTWLSDARALASPNIV-VILVGNKSDLADQR 121 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhCCCCCe-EEEEEEchhcchhc
Confidence 7889999999999888888889999999999999752 121 1122222222 23666 89999999987521
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .++...+++..+ ++++++||++|.|+.+
T Consensus 122 ~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 122 EVT----FLEASRFAQENG-----LLFLETSALTGENVEE 152 (161)
T ss_pred cCC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 111 122333333333 5789999999999976
No 139
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.62 E-value=3.2e-15 Score=144.85 Aligned_cols=150 Identities=21% Similarity=0.161 Sum_probs=96.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
||+++|+.|+|||||+++|++.... + ...|+......+......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--------------------------------~--~~~t~~~~~~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--------------------------------T--TIPTIGFNVETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--------------------------------C--CCCCcCcceEEEEECCEEEE
Confidence 5899999999999999999953200 0 01112222233445678899
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHH
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 501 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~ 501 (768)
||||||+..|.......+..+|++++|+|++.+. .+..........+......+.| +++|+||+|+... ...++
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~--~~~~~ 120 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE---RIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGA--LSVSE 120 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHhCcccCCCc-EEEEeeccCCccc--cCHHH
Confidence 9999999998777777788999999999999751 1111111111111212223566 8999999998752 22233
Q ss_pred HHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 502 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 502 i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+...+... ......++++++||++|.|+.+
T Consensus 121 ~~~~~~~~----~~~~~~~~~~~~Sa~~~~gv~~ 150 (158)
T cd00878 121 LIEKLGLE----KILGRRWHIQPCSAVTGDGLDE 150 (158)
T ss_pred HHHhhChh----hccCCcEEEEEeeCCCCCCHHH
Confidence 33333221 1222356899999999999976
No 140
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=3.7e-15 Score=169.05 Aligned_cols=143 Identities=24% Similarity=0.279 Sum_probs=104.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|++|+|||||+++|++....+ ....+|+|.+.....+.+.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~------------------------------v~~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VADTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee------------------------------eCCCCCCcccceEEEEEECCcEE
Confidence 589999999999999999998532111 11236788887777788888999
Q ss_pred EEEeCCCccc----h----HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004202 421 VVLDSPGHKD----F----VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 421 ~lIDTPGh~~----f----~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
.||||||+.+ + ......++..+|++|+|||+..+. .....+...+++..+.| +|+|+||+|+.
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~--------~~~~~~~~~~l~~~~~p-iilv~NK~D~~ 122 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGL--------TPADEEIAKILRKSNKP-VILVVNKVDGP 122 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCc-EEEEEECccCc
Confidence 9999999887 3 333455678899999999998763 23445666777778888 89999999975
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+. .+ .+.++ ..+++. .++++||++|.|+.+
T Consensus 123 ~~-~~-------~~~~~-~~lg~~----~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 123 DE-EA-------DAYEF-YSLGLG----EPYPISAEHGRGIGD 152 (435)
T ss_pred cc-hh-------hHHHH-HhcCCC----CCEEEEeeCCCCHHH
Confidence 41 11 11111 233442 368999999999966
No 141
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.62 E-value=9.4e-15 Score=141.91 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=96.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|++++|||||+++|++..-.. ......|.+.......+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~v~~~~~~~~~ 52 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-----------------------------NQESTIGAAFLTQTVNLDDTTVKF 52 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEEE
Confidence 689999999999999999999421000 011122322323333344445678
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEecccccccchh
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~~s~e 497 (768)
.||||||+++|.......+..+|++|+|+|++... .+ .+....+..+... ++| ++|++||+|+......
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~ 124 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEE---SF----EKAKSWVKELQRNASPNII-IALVGNKADLESKRQV 124 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHH---HH----HHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcC
Confidence 89999999998887777888999999999998642 11 1223333333333 355 8999999998742111
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. .++..+....+ ++++++||++|.|+.+
T Consensus 125 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 125 ST----EEAQEYADENG-----LLFFETSAKTGENVNE 153 (163)
T ss_pred CH----HHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 11 12233333333 4689999999999966
No 142
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.62 E-value=1.3e-14 Score=141.96 Aligned_cols=148 Identities=19% Similarity=0.203 Sum_probs=96.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--C
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~ 417 (768)
.++|+++|..|+|||||+++|++..- .....+.++.+.....+... .
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTY-------------------------------TESYISTIGVDFKIRTIELDGKT 50 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceeEEEEEEEECCEE
Confidence 36899999999999999999984210 01111233333333333333 3
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEeccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|.......+..+|++|+|+|+++.. .|. ...+.+..+.. -++| +++|.||+|+...
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~----~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~ 122 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFN----NVKQWLQEIDRYASENVN-KLLVGNKCDLTDK 122 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHH---HHH----hHHHHHHHHHHhCCCCCc-EEEEEEChhcccc
Confidence 57889999999999888888889999999999998742 222 22222333332 2456 8999999998642
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..-.. ++...+.+..+ ++++++||++|+|+.+
T Consensus 123 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 123 RVVDY----SEAQEFADELG-----IPFLETSAKNATNVEQ 154 (166)
T ss_pred cCCCH----HHHHHHHHHcC-----CeEEEEECCCCcCHHH
Confidence 21111 22233333333 5789999999999976
No 143
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.62 E-value=7e-15 Score=145.71 Aligned_cols=148 Identities=13% Similarity=0.149 Sum_probs=94.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe-----
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD----- 414 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~----- 414 (768)
.++|+++|..|+|||||+++|+... . ..+..+.++.+.....+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 52 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK--F-----------------------------NPKFITTVGIDFREKRVVYNSSG 52 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--C-----------------------------CccCCCccceEEEEEEEEEcCcc
Confidence 4899999999999999999998421 0 001112222222222221
Q ss_pred -------eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEE
Q 004202 415 -------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLI 483 (768)
Q Consensus 415 -------~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iI 483 (768)
.....+.||||||+++|...+...+..+|++|+|+|+++. .+|..+ ...+..+.. -+.| ++
T Consensus 53 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~----~~~~~~i~~~~~~~~~p-ii 124 (180)
T cd04127 53 PGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNE---QSFLNV----RNWMSQLQTHAYCENPD-IV 124 (180)
T ss_pred ccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCH---HHHHHH----HHHHHHHHHhcCCCCCc-EE
Confidence 1236788999999999988888889999999999999864 222221 122222222 2445 89
Q ss_pred EEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 484 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 484 VVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|.||+|+.+..... .++...+.+..+ ++++++||++|.|+.+
T Consensus 125 iv~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~ 167 (180)
T cd04127 125 LCGNKADLEDQRQVS----EEQAKALADKYG-----IPYFETSAATGTNVEK 167 (180)
T ss_pred EEEeCccchhcCccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 999999997521111 122333443333 4789999999999976
No 144
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.62 E-value=1.6e-14 Score=137.75 Aligned_cols=147 Identities=18% Similarity=0.227 Sum_probs=96.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--CCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~~~ 418 (768)
++|+++|.+++|||||+++|++.... .+..+..+.+.....+.. ...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFD-------------------------------ENYKSTIGVDFKSKTIEIDGKTV 49 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-------------------------------CccCCceeeeeEEEEEEECCEEE
Confidence 47999999999999999999842111 111122223333333333 446
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~~s 495 (768)
.+.|||+||+..|.......+..+|++|+|+|+++.. .+. .....+..+... +.| ++|++||+|+....
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~----~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 121 (159)
T cd00154 50 KLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRE---SFE----NLDKWLKELKEYAPENIP-IILVGNKIDLEDQR 121 (159)
T ss_pred EEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhCCCCCc-EEEEEEcccccccc
Confidence 7899999999999988888899999999999998731 111 222233333333 366 89999999996321
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .+++..+.... ..+++.+||++|.|+.+
T Consensus 122 ~~~----~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 122 QVS----TEEAQQFAKEN-----GLLFFETSAKTGENVEE 152 (159)
T ss_pred ccc----HHHHHHHHHHc-----CCeEEEEecCCCCCHHH
Confidence 212 23333444332 35789999999999976
No 145
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.62 E-value=5.2e-15 Score=144.37 Aligned_cols=150 Identities=18% Similarity=0.156 Sum_probs=93.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--Ce
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~ 418 (768)
.+|+++|.+|+|||||+++|+.. ..... . ..++.+.....+..+ ..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~~~-----------------------------~-~~t~~~~~~~~~~~~~~~~ 49 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFVEK-----------------------------Y-DPTIEDSYRKQVEVDGQQC 49 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCCcc-----------------------------c-CCcchheEEEEEEECCEEE
Confidence 68999999999999999999832 11000 0 011111112233333 45
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||+++|...+...+..+|++|+|+|.+... .|+.+.....+.+......++| ++||+||+|+.......
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 125 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQS---TFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVG 125 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEEc
Confidence 6779999999999988888899999999999987642 2222111122222221223567 89999999997521111
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .+...+.+.++ ++++++||++|.|+.+
T Consensus 126 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 126 K----EQGQNLARQWG-----CAFLETSAKAKINVNE 153 (164)
T ss_pred H----HHHHHHHHHhC-----CEEEEeeCCCCCCHHH
Confidence 1 11222333333 4789999999999976
No 146
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.62 E-value=5e-15 Score=143.64 Aligned_cols=150 Identities=16% Similarity=0.171 Sum_probs=91.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--Ce
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~ 418 (768)
++|+++|.+|+|||||+++|+... .... ..+ ++.+.....+..+ ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~-----------------------------~~~-t~~~~~~~~~~~~~~~~ 49 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEK-----------------------------YDP-TIEDSYRKQIEVDGQQC 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcc-----------------------------cCC-chhhhEEEEEEECCEEE
Confidence 689999999999999999998421 1000 001 0111111222223 35
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||+++|...+...+..+|++|+|+|.+... .|+.......+........++| +|+|+||+|+.+... .
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~-~ 124 (163)
T cd04136 50 MLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQS---SFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERV-V 124 (163)
T ss_pred EEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccce-e
Confidence 6789999999999887777888999999999998642 2221111111111111123566 899999999864211 1
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ..+...+.+.++ .+++++||++|.|+.+
T Consensus 125 ~---~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 125 S---REEGQALARQWG-----CPFYETSAKSKINVDE 153 (163)
T ss_pred c---HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 1 112222223322 5789999999999976
No 147
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.61 E-value=6e-15 Score=147.89 Aligned_cols=149 Identities=18% Similarity=0.189 Sum_probs=95.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|..++|||||+.+|... ... +..+.+..+ ...++..+.
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~--~~~------------------------------~~~pt~g~~--~~~~~~~~~ 61 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLG--EIV------------------------------TTIPTIGFN--VETVEYKNI 61 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCc------------------------------cccCCccee--EEEEEECCE
Confidence 4579999999999999999999731 000 001111122 223455788
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH-HHHH---HcCCCeEEEEEeccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIR---SFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l-~ll~---~lgip~iIVVvNKmDlv~~ 494 (768)
.+.||||||+.+|...+...+..+|++|+|+|+++.. .+. ...+.+ .++. ..++| ++||.||+|+.+.
T Consensus 62 ~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~---s~~----~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~ 133 (181)
T PLN00223 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD---RVV----EARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH---HHH----HHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCC
Confidence 9999999999999888888889999999999998742 111 111111 1211 12455 8999999998752
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .. +++...+.-..+....+.++++||++|+|+.+
T Consensus 134 ~--~~----~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 134 M--NA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred C--CH----HHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence 1 11 22233221111222334567899999999976
No 148
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.61 E-value=5.5e-15 Score=177.18 Aligned_cols=145 Identities=22% Similarity=0.306 Sum_probs=103.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++|++|+|||||+|+|++... .....+|+|++.....+..++.
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-------------------------------~vgn~pGvTve~k~g~~~~~~~ 50 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-------------------------------RVGNWAGVTVERKEGQFSTTDH 50 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCCceEeeEEEEEEcCce
Confidence 347899999999999999999984211 1112388999988888888999
Q ss_pred EEEEEeCCCccchHH--------HHH--Hh--cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEE
Q 004202 419 HVVVLDSPGHKDFVP--------NMI--SG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 486 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~--------~~i--~g--~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVv 486 (768)
.+.|+||||+.+|.. +.+ .. ...+|++|+|+|+++.. ........+..+++| +++|+
T Consensus 51 ~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le----------r~l~l~~ql~e~giP-vIvVl 119 (772)
T PRK09554 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE----------RNLYLTLQLLELGIP-CIVAL 119 (772)
T ss_pred EEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch----------hhHHHHHHHHHcCCC-EEEEE
Confidence 999999999877642 111 11 23699999999998742 222334456678998 89999
Q ss_pred ecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 487 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
||+|+.+. ..+. ..+..+.+.+| ++++|+||.+|+|+.+
T Consensus 120 NK~Dl~~~--~~i~---id~~~L~~~LG-----~pVvpiSA~~g~GIde 158 (772)
T PRK09554 120 NMLDIAEK--QNIR---IDIDALSARLG-----CPVIPLVSTRGRGIEA 158 (772)
T ss_pred Echhhhhc--cCcH---HHHHHHHHHhC-----CCEEEEEeecCCCHHH
Confidence 99998742 2222 22233333344 4789999999999976
No 149
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.61 E-value=1.5e-14 Score=141.97 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=95.4
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--C
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~ 417 (768)
.++|+++|.+|+|||||+++|++.. . ..+..+.++.+.....+..+ .
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~--f-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 51 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--F-----------------------------NPSFISTIGIDFKIRTIELDGKK 51 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc--C-----------------------------CcccccCccceEEEEEEEECCEE
Confidence 4799999999999999999998421 0 11111222223332333333 3
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEeccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~ 494 (768)
..+.||||||+++|.......+..+|++|+|+|++++. .|.. ..+.+..+.. .++| ++||.||+|+.+.
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~----~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~ 123 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEK---SFEN----IRNWMRNIEEHASEDVE-RMLVGNKCDMEEK 123 (167)
T ss_pred EEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHH---HHHh----HHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 57889999999998887777888999999999998742 2222 1222222222 3466 8999999999752
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..... ++...+.+..+ .+++++||++|.|+.+
T Consensus 124 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 124 RVVSK----EEGEALADEYG-----IKFLETSAKANINVEE 155 (167)
T ss_pred cCCCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 11111 22233333333 4789999999999976
No 150
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.61 E-value=8.1e-15 Score=145.77 Aligned_cols=149 Identities=21% Similarity=0.230 Sum_probs=95.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|..++|||||+.+|... . | .. ..+.+..+. ..+.....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~--~--------------------~-----~~-----~~~t~~~~~--~~~~~~~~ 57 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLG--E--------------------S-----VT-----TIPTIGFNV--ETVTYKNI 57 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--C--------------------C-----CC-----cCCccccce--EEEEECCE
Confidence 3589999999999999999999721 0 0 00 012122222 23344678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHH-H---HcCCCeEEEEEeccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-R---SFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll-~---~lgip~iIVVvNKmDlv~~ 494 (768)
.+.||||||+.+|...+...+..+|++|+|+|++... .++ ...+.+..+ . ..++| ++||.||+|+.+.
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~---s~~----~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 129 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD---RID----EAREELHRMLNEDELRDAV-ILVFANKQDLPDA 129 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHH---HHH----HHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccC
Confidence 8999999999999888888889999999999998642 111 222332222 1 12456 8999999998742
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ..+++...+. ........+.++++||++|+|+.+
T Consensus 130 ~--~~~~i~~~~~----~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 130 M--KAAEITEKLG----LHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred C--CHHHHHHHhC----ccccCCCcEEEEEeeCCCCCCHHH
Confidence 1 1122222221 111122345678999999999976
No 151
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.61 E-value=5.2e-15 Score=161.92 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=97.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
....|+|||.+|||||||+++|+.....+. ..+.+|+......+...+
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va-------------------------------~y~fTT~~p~ig~v~~~~~ 204 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------------DYPFTTLVPNLGVVRVDDG 204 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCcccc-------------------------------CCCCCccCCEEEEEEeCCc
Confidence 456799999999999999999994321111 113456665555566655
Q ss_pred eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cCCCeEEEEEecc
Q 004202 418 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKM 489 (768)
Q Consensus 418 ~~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVvNKm 489 (768)
..++|+||||+.+ +...+++.+..+|++|+|+|++.......++.+.....+....... ...| +|||+||+
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~ 283 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKI 283 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCc
Confidence 8999999999642 4455677778899999999998641111111111111111111111 2456 88999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+.+. +..+++.+++.+ ..+ .+++++||++++|+.+
T Consensus 284 DL~~~--~~~~~~~~~l~~---~~~-----~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 284 DLLDE--EELAELLKELKK---ALG-----KPVFPISALTGEGLDE 319 (329)
T ss_pred cCCCh--HHHHHHHHHHHH---HcC-----CcEEEEEccCCcCHHH
Confidence 99752 223333333322 222 4789999999999976
No 152
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.61 E-value=4.8e-15 Score=146.22 Aligned_cols=147 Identities=19% Similarity=0.162 Sum_probs=93.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|..++|||||+++|.+.. .. . ...|+......++..+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~------------------------------~--~~~T~~~~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FM------------------------------Q--PIPTIGFNVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CC------------------------------C--cCCcCceeEEEEEECCEEEE
Confidence 58999999999999999998420 00 0 11122222234555788999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccchhh
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s~e~ 498 (768)
||||||+.+|...+...+..+|++|+|+|++... .++.. ......++.. .+.| ++||.||+|+.+. ..
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~---s~~~~---~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~--~~ 117 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD---RVSEA---HSELAKLLTEKELRDAL-LLIFANKQDVAGA--LS 117 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHH---HHHHH---HHHHHHHhcChhhCCCC-EEEEEeCcCcccC--CC
Confidence 9999999998888888889999999999998641 12111 1111222221 2355 8999999998641 11
Q ss_pred HHHHHHHHhHHHhhcCC-CCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGF-KDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~-~~~~i~~IpVSA~tG~gI~e 535 (768)
.+ ++..+++...+ ....+.++++||++|.|+.+
T Consensus 118 ~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 151 (169)
T cd04158 118 VE----EMTELLSLHKLCCGRSWYIQGCDARSGMGLYE 151 (169)
T ss_pred HH----HHHHHhCCccccCCCcEEEEeCcCCCCCCHHH
Confidence 12 22222221111 11235688999999999976
No 153
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.61 E-value=1.6e-14 Score=145.08 Aligned_cols=149 Identities=18% Similarity=0.259 Sum_probs=98.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+++|++... + .......|.|..+....+ +.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~-~----------------------------~~~~~~~~~t~~~~~~~~---~~ 70 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKN-L----------------------------ARTSKTPGRTQLINFFEV---ND 70 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC-c----------------------------ccccCCCCceeEEEEEec---CC
Confidence 458899999999999999999994210 0 011122456665544332 46
Q ss_pred EEEEEeCCCcc----------chHHHH---HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEE
Q 004202 419 HVVVLDSPGHK----------DFVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 485 (768)
Q Consensus 419 ~i~lIDTPGh~----------~f~~~~---i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVV 485 (768)
.+.||||||+. ++.... +.....++++++|+|+..+. .....+.+.++...++| ++++
T Consensus 71 ~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~i~~~l~~~~~~-~iiv 141 (196)
T PRK00454 71 KLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPL--------KELDLQMIEWLKEYGIP-VLIV 141 (196)
T ss_pred eEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCC--------CHHHHHHHHHHHHcCCc-EEEE
Confidence 89999999952 232222 33344567899999988652 22334455666778888 8999
Q ss_pred EecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 486 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 486 vNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+||+|+.+ ....+.+...+...+... ..+++|+||++|.|+.+
T Consensus 142 ~nK~Dl~~--~~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi~~ 184 (196)
T PRK00454 142 LTKADKLK--KGERKKQLKKVRKALKFG-----DDEVILFSSLKKQGIDE 184 (196)
T ss_pred EECcccCC--HHHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCHHH
Confidence 99999975 333444455555555332 35789999999999966
No 154
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.61 E-value=2e-14 Score=140.29 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=95.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
++|+++|.+++|||||+++|++..- ..+..+.++.+.....+..++ .
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 52 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF-------------------------------NLDSKSTIGVEFATRSIQIDGKTI 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccceEEEEEEEEECCEEE
Confidence 6899999999999999999984210 111123334444444444444 4
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+++|.......+..+|++|+|+|+++.. .+..+ .+.+..+.. .++| ++||+||+|+....
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~----~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~ 124 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQ---TFENV----ERWLKELRDHADSNIV-IMLVGNKSDLRHLR 124 (165)
T ss_pred EEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHH---HHHHH----HHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 6889999999998887778888999999999998642 12211 112222222 2455 89999999987521
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .++...+.... .++++++||++|.|+.+
T Consensus 125 ~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 125 AVP----TEEAKAFAEKN-----GLSFIETSALDGTNVEE 155 (165)
T ss_pred cCC----HHHHHHHHHHc-----CCEEEEEECCCCCCHHH
Confidence 111 12233333322 25789999999999966
No 155
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.61 E-value=5.7e-15 Score=147.92 Aligned_cols=153 Identities=15% Similarity=0.062 Sum_probs=96.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+..+|+++|+.|+|||||+++|.+..- . . ...|+......+...+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~--~------------------------------~--~~~T~~~~~~~i~~~~~ 63 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRL--A------------------------------Q--HVPTLHPTSEELTIGNI 63 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--c------------------------------c--cCCccCcceEEEEECCE
Confidence 458899999999999999999984210 0 0 00122222234455678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.++||||+.++...+...+..+|++|+|+|+++.. .+........+.+......+.| ++|++||+|+... ..
T Consensus 64 ~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~---s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~--~~ 137 (190)
T cd00879 64 KFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE---RFQESKEELDSLLSDEELANVP-FLILGNKIDLPGA--VS 137 (190)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH---HHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC--cC
Confidence 8999999999998877777889999999999998631 1111111111222211224566 8999999998641 12
Q ss_pred HHHHHHHHhHHHhhcCC-----------CCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGF-----------KDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~-----------~~~~i~~IpVSA~tG~gI~e 535 (768)
.+.+ ..++....+ ......++++||++|+|+.+
T Consensus 138 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e 181 (190)
T cd00879 138 EEEL----RQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGE 181 (190)
T ss_pred HHHH----HHHhCcccccccccccccccCceeEEEEEeEecCCCChHH
Confidence 2223 233221110 01235689999999999976
No 156
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.61 E-value=2.4e-14 Score=140.35 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=93.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--CCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~~~ 418 (768)
++|+++|..|+|||||+++|++.. . .....+.++++.....+.. ...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 50 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS--F-----------------------------TSAFVSTVGIDFKVKTVFRNDKRV 50 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--C-----------------------------CCCCCCceeeEEEEEEEEECCEEE
Confidence 689999999999999999998421 0 0000111222222222222 336
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+++|.......+..+|++|+|+|++... .|+. ..+.+..+.. ..+| ++||+||+|+.+..
T Consensus 51 ~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---s~~~----~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~ 122 (165)
T cd01865 51 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE---SFNA----VQDWSTQIKTYSWDNAQ-VILVGNKCDMEDER 122 (165)
T ss_pred EEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHH---HHHH----HHHHHHHHHHhCCCCCC-EEEEEECcccCccc
Confidence 7899999999999888888899999999999998642 2222 2222222222 2345 89999999997531
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .++..++.+.++ ++++++||++|.|+.+
T Consensus 123 ~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 123 VVS----SERGRQLADQLG-----FEFFEASAKENINVKQ 153 (165)
T ss_pred ccC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 111 112223333333 4689999999999976
No 157
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.61 E-value=2e-15 Score=132.30 Aligned_cols=82 Identities=38% Similarity=0.634 Sum_probs=78.3
Q ss_pred CceeeeEeEEeeCCCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCc
Q 004202 568 PLLMPICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 647 (768)
Q Consensus 568 plr~~I~dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~ 647 (768)
||+|+|+++|+.. |++ ++|+|++|+|++||+|+++|++..++|++|++++.++++|.|||+|+|.|++++..++++|+
T Consensus 1 plr~~I~~v~~~~-g~v-v~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~ 78 (82)
T cd04089 1 PLRLPIIDKYKDM-GTV-VLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGF 78 (82)
T ss_pred CeEEEEEeEEEcC-CEE-EEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCC
Confidence 7999999999875 888 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 004202 648 VLCH 651 (768)
Q Consensus 648 VL~~ 651 (768)
+|++
T Consensus 79 vl~~ 82 (82)
T cd04089 79 VLCS 82 (82)
T ss_pred EEeC
Confidence 9974
No 158
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.60 E-value=7.3e-15 Score=142.43 Aligned_cols=151 Identities=18% Similarity=0.170 Sum_probs=92.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-CCeEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYHV 420 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-~~~~i 420 (768)
+|+++|.+|+|||||+++|++..-. . .....|.+. ..+.. ....+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~---------------------------~---~~~t~~~~~----~~~~~~~~~~l 46 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV---------------------------T---TIPTVGFNV----EMLQLEKHLSL 46 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc---------------------------c---ccCccCcce----EEEEeCCceEE
Confidence 4899999999999999999842100 0 000111111 11222 35689
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHH
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 500 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~ 500 (768)
.||||||+..+...+...+..+|++|+|+|++++. .+.....+..+.+......++| +++|+||+|+... ...+
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~--~~~~ 120 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA---RLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGA--LTAE 120 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH---HHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccC--cCHH
Confidence 99999999998888888889999999999998752 1111111112222111124677 8999999998642 1122
Q ss_pred HHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 501 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 501 ~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
++...+.. ..+.. ...++++++||++|+|+.+
T Consensus 121 ~i~~~~~~--~~~~~-~~~~~~~~~Sa~~~~gv~~ 152 (160)
T cd04156 121 EITRRFKL--KKYCS-DRDWYVQPCSAVTGEGLAE 152 (160)
T ss_pred HHHHHcCC--cccCC-CCcEEEEecccccCCChHH
Confidence 23222210 11111 1245789999999999976
No 159
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.60 E-value=9.1e-15 Score=144.83 Aligned_cols=149 Identities=16% Similarity=0.179 Sum_probs=94.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--CeE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NYH 419 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~~ 419 (768)
+|+++|..++|||||+++|++. . ...+..+.+..+.....+... ...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~--~-----------------------------f~~~~~~t~~~~~~~~~~~~~~~~~~ 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD--V-----------------------------FDKNYKATIGVDFEMERFEILGVPFS 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--C-----------------------------CCCCCCCceeeEEEEEEEEECCEEEE
Confidence 6999999999999999999942 1 111112333333333334333 357
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-c--CCCeEEEEEecccccccch
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F--GVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-l--gip~iIVVvNKmDlv~~s~ 496 (768)
+.||||||+++|.......++.+|++|+|+|++... .++ ...+.+..+.. . ..+++|+|.||+|+.+...
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~ 123 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVA---SLE----HTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ 123 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc
Confidence 889999999999888888899999999999998631 111 12222222222 1 1123889999999864211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
......+...+.+..+ .+++.+||++|.|+.+
T Consensus 124 --~~~~~~~~~~~~~~~~-----~~~~e~Sa~~g~~v~~ 155 (170)
T cd04108 124 --YALMEQDAIKLAAEMQ-----AEYWSVSALSGENVRE 155 (170)
T ss_pred --ccccHHHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 1111222333333333 4689999999999976
No 160
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=8.5e-15 Score=160.48 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=98.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-CC
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KN 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-~~ 417 (768)
....|+|||.+|||||||+++|+.....+. ..+++|+......+.. +.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va-------------------------------~ypfTT~~p~~G~v~~~~~ 205 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------------DYPFTTLHPNLGVVRVDDY 205 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccC-------------------------------CCCCceeCceEEEEEeCCC
Confidence 346799999999999999999995322111 1156788777777766 56
Q ss_pred eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cCCCeEEEEEecc
Q 004202 418 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKM 489 (768)
Q Consensus 418 ~~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVvNKm 489 (768)
..++|+||||..+ +...+++.+..+|++|+|||++... .++.......+....... ...| +|||+||+
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~---s~e~~~~~~~EL~~~~~~L~~kp-~IIV~NKi 281 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD---PVEDYKTIRNELEKYSPELADKP-RILVLNKI 281 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC---CHHHHHHHHHHHHHhhhhcccCC-eEEEEECc
Confidence 7899999999642 5556677888999999999998642 111111111111111111 2556 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+.+.. +... ..+..+++.. ..+++++||++++|+.+
T Consensus 282 DL~~~~-~~~~---~~~~~~~~~~-----~~~i~~iSAktg~GI~e 318 (335)
T PRK12299 282 DLLDEE-EERE---KRAALELAAL-----GGPVFLISAVTGEGLDE 318 (335)
T ss_pred ccCCch-hHHH---HHHHHHHHhc-----CCCEEEEEcCCCCCHHH
Confidence 997521 1111 1122222222 25789999999999976
No 161
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.60 E-value=2.4e-14 Score=140.85 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=95.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
.++|+++|.+|+|||||+++|+...-.. ......|.+.......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMITIDGKQIK 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 3799999999999999999998421100 00011223332222223333457
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccch
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s~ 496 (768)
+.||||||+++|.......+..+|++|+|+|++... .++ .....+..+.. -++| +|||.||+|+.....
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~ 126 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN----HLTSWLEDARQHSNSNMT-IMLIGNKCDLESRRE 126 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhCCCCCc-EEEEEECcccccccC
Confidence 899999999998888888889999999999998642 222 11222222222 2566 899999999974211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. .++...+++..+ ++++++||++|.|+.+
T Consensus 127 ~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 127 VS----YEEGEAFAKEHG-----LIFMETSAKTASNVEE 156 (168)
T ss_pred CC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 11 122333333333 4689999999999976
No 162
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.60 E-value=9.2e-15 Score=139.71 Aligned_cols=146 Identities=20% Similarity=0.191 Sum_probs=93.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEEE
Q 004202 343 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 422 (768)
Q Consensus 343 VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~l 422 (768)
|+++|+.|+|||||+++|.+..- ..+..+.+..+. ..+..++..+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~t~~~~~--~~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-------------------------------SEDTIPTVGFNM--RKVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-------------------------------CcCccCCCCcce--EEEEECCEEEEE
Confidence 79999999999999999984210 001112222222 223446678999
Q ss_pred EeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH----HcCCCeEEEEEecccccccchhh
Q 004202 423 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 423 IDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~----~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
|||||+.+|...+...+..+|++++|+|++... .+ .+..+.+..+. ..++| +++|+||+|+.+. ..
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~----~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~--~~ 118 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT---AL----EAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGA--LS 118 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH---HH----HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC--cC
Confidence 999999999888888899999999999998631 01 12222222221 24667 8999999998753 22
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+.+...+.. .......++++++|+++|.|+.+
T Consensus 119 ~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 119 VDELIEQMNL----KSITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred HHHHHHHhCc----ccccCCceEEEEEEeccCCChHH
Confidence 2222222210 01112346789999999999965
No 163
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.60 E-value=7.4e-15 Score=147.11 Aligned_cols=156 Identities=20% Similarity=0.218 Sum_probs=94.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE-eeCCe
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-DSKNY 418 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~-~~~~~ 418 (768)
.++|+++|+.|+|||||+++|++..-. .. ....|.+........ ...+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~---------------------------~~---~~t~~~~~~~~~~~~~~~~~~ 52 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV---------------------------NT---VPTKGFNTEKIKVSLGNSKGI 52 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC---------------------------Cc---CCccccceeEEEeeccCCCce
Confidence 478999999999999999999842100 00 001122221111111 22457
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||+++|...+...+..+|++|+|+|++... .+.....+..+.+......++| ++||+||+|+... ..
T Consensus 53 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~--~~ 126 (183)
T cd04152 53 TFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVE---RMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNA--LS 126 (183)
T ss_pred EEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc--CC
Confidence 8999999999998877777788999999999998742 1111111222333333345677 8999999998642 11
Q ss_pred HHHHHHHHhHHHhhcCCC-CCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFK-DASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~-~~~i~~IpVSA~tG~gI~e 535 (768)
.+ ++..++....+. ...++++++||++|+|+.+
T Consensus 127 ~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 127 VS----EVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred HH----HHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 11 122222111111 1235689999999999976
No 164
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.60 E-value=2.6e-15 Score=133.09 Aligned_cols=82 Identities=30% Similarity=0.415 Sum_probs=78.0
Q ss_pred ceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCC----eeeEEEeeeecccccceeccCCceEEEecccccccc
Q 004202 569 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG----EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRV 643 (768)
Q Consensus 569 lr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~----~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i 643 (768)
|+|+|+++|+++ .|+| ++|+|++|.+++||+++++|.+ ..++|++|++++.+++.|.|||+|+|.|++++..++
T Consensus 1 ~~~~I~~vf~v~g~GtV-v~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i 79 (87)
T cd03694 1 AEFQIDEIYSVPGVGTV-VGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLL 79 (87)
T ss_pred CEEEEEeEEEcCCcceE-EEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHc
Confidence 689999999998 9998 8999999999999999999984 689999999999999999999999999999999999
Q ss_pred cCCccccc
Q 004202 644 MSGGVLCH 651 (768)
Q Consensus 644 ~rG~VL~~ 651 (768)
++|+|||+
T Consensus 80 ~~G~vl~~ 87 (87)
T cd03694 80 RKGMVLVS 87 (87)
T ss_pred CCccEEeC
Confidence 99999985
No 165
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.60 E-value=1e-14 Score=141.57 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=94.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|.+|+|||||+++|++..... ......+.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-----------------------------DLAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-----------------------------ccCCcccceEEEEEEEECCEEEEE
Confidence 489999999999999999998421100 011222333332222233334678
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH----HcCCCeEEEEEecccccccch
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~----~lgip~iIVVvNKmDlv~~s~ 496 (768)
.||||||+..|.......+..+|++|+|+|++... .+. .....+..+. ..++| +++|+||+|+.....
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~----~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~ 123 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRD---TFT----NLETWLNELETYSTNNDIV-KMLVGNKIDKENREV 123 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHH---HHH----hHHHHHHHHHHhCCCCCCc-EEEEEECCccccccc
Confidence 99999999998877777888999999999998742 111 1111222222 23566 789999999974211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .++...+.+.. .++++++||++|.|+.+
T Consensus 124 ~-----~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 124 T-----REEGLKFARKH-----NMLFIETSAKTRDGVQQ 152 (161)
T ss_pred C-----HHHHHHHHHHc-----CCEEEEEecCCCCCHHH
Confidence 1 12223333332 35789999999999976
No 166
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.60 E-value=5.4e-15 Score=141.00 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=83.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|++|+|||||+++|++.. +. ...|+.. +... .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~----------------------~~-------------~~~t~~~-----~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE----------------------IL-------------YKKTQAV-----EYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc----------------------cc-------------cccceeE-----EEcC---e
Confidence 79999999999999999998321 00 0012211 1112 6
Q ss_pred EEeCCCc----cchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004202 422 VLDSPGH----KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 422 lIDTPGh----~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
+|||||. ..+...+...+..+|++|+|+|++.+.. .+..+. ...++.| +|+|+||+|+.+. ..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s--------~~~~~~---~~~~~~p-~ilv~NK~Dl~~~-~~ 105 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES--------RFPPGF---ASIFVKP-VIGLVTKIDLAEA-DV 105 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc--------CCChhH---HHhccCC-eEEEEEeeccCCc-cc
Confidence 8999997 3455556566889999999999987631 122222 2223445 8889999998742 11
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ++...+++..++ .+++++||++|.|+.+
T Consensus 106 ~~----~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 106 DI----ERAKELLETAGA----EPIFEISSVDEQGLEA 135 (142)
T ss_pred CH----HHHHHHHHHcCC----CcEEEEecCCCCCHHH
Confidence 11 223333433332 3689999999999965
No 167
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.60 E-value=9.3e-15 Score=143.45 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=97.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--C
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--K 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~ 416 (768)
..++|+++|.+|+|||||+++|+.. .. ..+..+.++.+.....+.. .
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTN--KF-----------------------------DTQLFHTIGVEFLNKDLEVDGH 52 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcC--CC-----------------------------CcCcCCceeeEEEEEEEEECCe
Confidence 3589999999999999999999832 00 0111122233322223333 3
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH---HcCCCeEEEEEecccccc
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~---~lgip~iIVVvNKmDlv~ 493 (768)
...+.||||||+++|...+...+..+|++|+|+|.+... +++.+..+..+.+..+. ..++| +++|.||+|+..
T Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 128 (170)
T cd04116 53 FVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQ---SFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPE 128 (170)
T ss_pred EEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHH---HHHhHHHHHHHHHHhcccccCCCCc-EEEEEECccccc
Confidence 456789999999999888888889999999999998752 22222222222222221 13466 899999999863
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ... .+++.++++..++ .+++++||++|.|+.+
T Consensus 129 ~-~~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 129 R-QVS----TEEAQAWCRENGD----YPYFETSAKDATNVAA 161 (170)
T ss_pred c-ccC----HHHHHHHHHHCCC----CeEEEEECCCCCCHHH
Confidence 1 111 2233444444432 4789999999999966
No 168
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.60 E-value=1.5e-14 Score=147.80 Aligned_cols=151 Identities=18% Similarity=0.211 Sum_probs=97.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
+.|+++|..++|||||+.++++. ....+..+.++.+.....+..++ .
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~-------------------------------~f~~~~~~Ti~~~~~~~~i~~~~~~v 49 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDD-------------------------------TFCEACKSGVGVDFKIKTVELRGKKI 49 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhC-------------------------------CCCCcCCCcceeEEEEEEEEECCEEE
Confidence 36899999999999999999832 11112223344444444455554 6
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||+|+++|...+...++.+|++|+|+|.++.. +|+.+..+ ...+.....-++| +|||.||+|+....+ .
T Consensus 50 ~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~---Sf~~l~~w-~~~i~~~~~~~~p-iilVgNK~DL~~~~~-v 123 (202)
T cd04120 50 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE---TFDDLPKW-MKMIDKYASEDAE-LLLVGNKLDCETDRE-I 123 (202)
T ss_pred EEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHH---HHHHHHHH-HHHHHHhCCCCCc-EEEEEECcccccccc-c
Confidence 7889999999999888888899999999999999742 33332111 1111111122466 899999999864211 1
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ..+...+.+.. ..+.++.+||++|.||.+
T Consensus 124 ~---~~~~~~~a~~~----~~~~~~etSAktg~gV~e 153 (202)
T cd04120 124 S---RQQGEKFAQQI----TGMRFCEASAKDNFNVDE 153 (202)
T ss_pred C---HHHHHHHHHhc----CCCEEEEecCCCCCCHHH
Confidence 1 11222222222 125789999999999977
No 169
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.60 E-value=9.9e-15 Score=143.50 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=96.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|+.|+|||||+++|.+..-. ......|.+ ...+...+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~------------------------------~~~~t~g~~----~~~i~~~~~ 58 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS------------------------------HITPTQGFN----IKTVQSDGF 58 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc------------------------------ccCCCCCcc----eEEEEECCE
Confidence 4689999999999999999999842100 000112222 223445678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.+||+||+.++...+...+..+|++++|+|+.... .+.....+....+......++| +++++||+|+... ..
T Consensus 59 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~--~~ 132 (173)
T cd04155 59 KLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKK---RLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATA--AP 132 (173)
T ss_pred EEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHH---HHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC--CC
Confidence 8999999999988877777788999999999998631 1111111111222222334677 8999999998752 22
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+.+.+.+ ....+....++++++||++|+|+.+
T Consensus 133 ~~~i~~~l----~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 133 AEEIAEAL----NLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred HHHHHHHc----CCcccCCCeEEEEEeECCCCCCHHH
Confidence 22232222 1112222334678999999999976
No 170
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.60 E-value=1.5e-14 Score=173.56 Aligned_cols=146 Identities=23% Similarity=0.302 Sum_probs=107.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+|+|++|+|||||+++|++....+ .+..+|+|.+.......+.+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i------------------------------v~~~pGvT~d~~~~~~~~~~ 322 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAV------------------------------VEDTPGVTRDRVSYDAEWAG 322 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCeeEEEEEEEEEECC
Confidence 345789999999999999999999532211 12347899988887888889
Q ss_pred eEEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004202 418 YHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 418 ~~i~lIDTPGh~~--------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
..+.||||||... +...+..++..+|++|+|+|++.+. .....+.+.+++..+.| +|+|+||+
T Consensus 323 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~--------~~~d~~i~~~Lr~~~~p-vIlV~NK~ 393 (712)
T PRK09518 323 TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGL--------TSTDERIVRMLRRAGKP-VVLAVNKI 393 (712)
T ss_pred EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHhcCCC-EEEEEECc
Confidence 9999999999653 4555667788999999999998763 33455566777778888 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+... .. ....+ ..+++. ..+++||++|.|+.+
T Consensus 394 D~~~~-~~-------~~~~~-~~lg~~----~~~~iSA~~g~GI~e 426 (712)
T PRK09518 394 DDQAS-EY-------DAAEF-WKLGLG----EPYPISAMHGRGVGD 426 (712)
T ss_pred ccccc-hh-------hHHHH-HHcCCC----CeEEEECCCCCCchH
Confidence 98642 11 11111 123442 247999999999976
No 171
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.59 E-value=9.5e-15 Score=146.56 Aligned_cols=153 Identities=17% Similarity=0.111 Sum_probs=97.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|+++|.+|+|||||+++|++..-.. ...|.......+..++.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~ 61 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ----------------------------------HQPTQHPTSEELAIGNI 61 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc----------------------------------cCCccccceEEEEECCE
Confidence 34899999999999999999998421000 00112222233445678
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHH-HH---HHcCCCeEEEEEeccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LI---RSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~-ll---~~lgip~iIVVvNKmDlv~~ 494 (768)
.+.++||||+..+...+...+..+|++|+|+|+++.. .+ ....+.+. ++ ...++| +++|+||+|+...
T Consensus 62 ~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~---~~----~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 62 KFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE---RF----AESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHH---HH----HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 9999999999998888888889999999999998641 11 12222222 22 224677 8999999998642
Q ss_pred chhhHHHHHHHHhHH--HhhcC-CCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTF--LRSCG-FKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~--lk~~g-~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+++.+.+.-. ....+ .......++++||++|.|+.+
T Consensus 134 --~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 175 (184)
T smart00178 134 --ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGE 175 (184)
T ss_pred --CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHH
Confidence 1122333333211 00000 011345789999999999976
No 172
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.59 E-value=2.2e-14 Score=140.54 Aligned_cols=147 Identities=17% Similarity=0.177 Sum_probs=94.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--CCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~~~ 418 (768)
++|+++|+.|+|||||+++|+.. .+. .+..+.+..+.....+.. ...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 51 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK--KFM-----------------------------ADCPHTIGVEFGTRIIEVNGQKI 51 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCCCcccceeEEEEEEEECCEEE
Confidence 68999999999999999999842 110 000111122222222333 345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+++|...+...+..+|++|+|+|++... +|+ ...+.+..+.. -+.| +++|.||+|+....
T Consensus 52 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~----~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~ 123 (166)
T cd04122 52 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS---TYN----HLSSWLTDARNLTNPNTV-IFLIGNKADLEAQR 123 (166)
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 7889999999999888888899999999999998742 222 12222222222 2344 89999999997532
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .++...+.+.. .++++++||++|.|+.+
T Consensus 124 ~~~----~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 124 DVT----YEEAKQFADEN-----GLLFLECSAKTGENVED 154 (166)
T ss_pred CcC----HHHHHHHHHHc-----CCEEEEEECCCCCCHHH
Confidence 111 12233333333 25789999999999976
No 173
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=2.7e-14 Score=139.71 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=97.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
...+|+++|+.|+|||||+++|+... + .....+.++.+.....+...+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~ 54 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGL--F-----------------------------PPGQGATIGVDFMIKTVEIKGE 54 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCC--C-----------------------------CCCCCCceeeEEEEEEEEECCE
Confidence 45899999999999999999998421 0 001112233344444444554
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
..+.|||+||+.+|...+...+..+|++|+|+|++.+. .+... ......+..+...++| +++|+||+|+... .
T Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~-~~~~~~l~~~~~~~~~-~i~v~NK~D~~~~-~ 128 (169)
T cd04114 55 KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEE---SFRCL-PEWLREIEQYANNKVI-TILVGNKIDLAER-R 128 (169)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHH---HHHHH-HHHHHHHHHhCCCCCe-EEEEEECcccccc-c
Confidence 45789999999999888888899999999999998642 11111 1111112222223566 7899999998742 1
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+....+...+.... ..+++++||++|.|+.+
T Consensus 129 ~i~~~~~~~~~~~~--------~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 129 EVSQQRAEEFSDAQ--------DMYYLETSAKESDNVEK 159 (169)
T ss_pred ccCHHHHHHHHHHc--------CCeEEEeeCCCCCCHHH
Confidence 21122223332221 25689999999999966
No 174
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.59 E-value=8.4e-15 Score=149.16 Aligned_cols=152 Identities=19% Similarity=0.188 Sum_probs=88.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
++|+|+|..|+|||||+++|++.. . ..+..+.++.+.....+..++ .
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~--f-----------------------------~~~~~pt~~~~~~~~~i~~~~~~~ 49 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQE--F-----------------------------PEEYIPTEHRRLYRPAVVLSGRVY 49 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC--C-----------------------------CcccCCccccccceeEEEECCEEE
Confidence 479999999999999999998421 0 111122232232222233344 5
Q ss_pred EEEEEeCCCccchH--------HHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH--HcCCCeEEEEEec
Q 004202 419 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNK 488 (768)
Q Consensus 419 ~i~lIDTPGh~~f~--------~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~--~lgip~iIVVvNK 488 (768)
.+.||||||+.+|- ......+..+|++|+|+|++.+. +|+.+.....+.+.... ..++| +|||.||
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~---S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK 125 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD---SFHYVKLLRQQILETRPAGNKEPP-IVVVGNK 125 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcccCCCCCC-EEEEEEC
Confidence 78899999976541 11334567899999999998752 22211111111111110 23566 8999999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+....... ..++..+.+.. ..++|+++||++|.|+.+
T Consensus 126 ~Dl~~~~~~~----~~~~~~~~~~~----~~~~~~e~Sak~g~~v~~ 164 (198)
T cd04142 126 RDQQRHRFAP----RHVLSVLVRKS----WKCGYLECSAKYNWHILL 164 (198)
T ss_pred cccccccccc----HHHHHHHHHHh----cCCcEEEecCCCCCCHHH
Confidence 9996421111 11222222211 136789999999999976
No 175
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.59 E-value=6.1e-15 Score=144.74 Aligned_cols=131 Identities=23% Similarity=0.255 Sum_probs=87.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|++|+|||||+++|.+... .. ..|..+ .+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--------------------------------~~---~~~~~v---~~~~~----~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--------------------------------LA---RKTQAV---EFNDK----G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--------------------------------cC---ccceEE---EECCC----C
Confidence 799999999999999999873210 00 012211 11111 2
Q ss_pred EEeCCCc----cchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004202 422 VLDSPGH----KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 422 lIDTPGh----~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
+|||||. .++...++.++..+|++|+|+|++.+.. .+....+.+ ..+.| +++++||+|+.+.+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s--------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~-- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES--------RLPAGLLDI--GVSKR-QIAVISKTDMPDAD-- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc--------ccCHHHHhc--cCCCC-eEEEEEccccCccc--
Confidence 6999995 5677788888899999999999997631 122222221 23556 89999999986422
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ..+..+++..++. .+++++||++|+|+.+
T Consensus 108 -~----~~~~~~~~~~~~~---~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 108 -V----AATRKLLLETGFE---EPIFELNSHDPQSVQQ 137 (158)
T ss_pred -H----HHHHHHHHHcCCC---CCEEEEECCCccCHHH
Confidence 2 2233444455542 5899999999999976
No 176
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.59 E-value=2.2e-14 Score=147.52 Aligned_cols=148 Identities=15% Similarity=0.122 Sum_probs=95.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC---C
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---N 417 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~---~ 417 (768)
++|+++|..|+|||||+++|++.. ...+..+.++.+.....+... .
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-------------------------------~~~~~~~T~~~d~~~~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-------------------------------FGKSYKQTIGLDFFSKRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-------------------------------CCCCCCCceeEEEEEEEEEeCCCCE
Confidence 479999999999999999998420 011122344455544444443 4
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc-----CCCeEEEEEeccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l-----gip~iIVVvNKmDlv 492 (768)
..+.||||||++.|.......+..+|++|+|+|++... .|+. ..+.+..+... ..+++|+|.||+|+.
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~---s~~~----~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQ---SFEN----LEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHH---HHHH----HHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 67899999999988877777889999999999998742 2221 22222222221 112388999999997
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..... ..++...+.+..+ ++++++||++|+|+.+
T Consensus 123 ~~~~v----~~~~~~~~~~~~~-----~~~~~iSAktg~gv~~ 156 (215)
T cd04109 123 HNRTV----KDDKHARFAQANG-----MESCLVSAKTGDRVNL 156 (215)
T ss_pred ccccc----CHHHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 42111 1122333333333 4679999999999976
No 177
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=1.3e-14 Score=142.49 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|+.|+|||||+++|++.. ... ... ......++.. .+......+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~--~~~-------------------------~~~-~~~~~~~~~~---~~~~~~~~~ 49 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEE--FPE-------------------------NVP-RVLPEITIPA---DVTPERVPT 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc--CCc-------------------------cCC-CcccceEeee---eecCCeEEE
Confidence 379999999999999999998421 100 000 0001112211 122355789
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccchhh
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.||||||+.++...+...+..+|++|||+|++.+. .++.+. ...+..+.. .++| +++|+||+|+.+....
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~~~~---~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~- 121 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPS---TLERIR---TKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQ- 121 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHH---HHHHHH---HHHHHHHHHhCCCCC-EEEEEEchhcccccch-
Confidence 99999999988877777889999999999998752 111100 111222322 3566 8999999999753211
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..+..++..+.+.+. ...+++++||++|.|+.+
T Consensus 122 -~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~ 154 (166)
T cd01893 122 -AGLEEEMLPIMNEFR---EIETCVECSAKTLINVSE 154 (166)
T ss_pred -hHHHHHHHHHHHHHh---cccEEEEeccccccCHHH
Confidence 012222322222221 112689999999999976
No 178
>PRK11058 GTPase HflX; Provisional
Probab=99.58 E-value=1.4e-15 Score=171.59 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=95.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe-
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY- 418 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~- 418 (768)
.++|+++|++|+|||||+|+|++.... .....++|++.....+.+.+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-------------------------------v~~~~~tTld~~~~~i~l~~~~ 245 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-------------------------------AADQLFATLDPTLRRIDVADVG 245 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-------------------------------eccCCCCCcCCceEEEEeCCCC
Confidence 468999999999999999999842111 112256777777666666554
Q ss_pred EEEEEeCCCccch--------HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 419 HVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 ~i~lIDTPGh~~f--------~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.+.|+||||..+. +..++..+..||++|+|+|++++.+...+ ..+.+.+..+...++| +|+|+||+|
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l----~~v~~iL~el~~~~~p-vIiV~NKiD 320 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENI----EAVNTVLEEIDAHEIP-TLLVMNKID 320 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH----HHHHHHHHHhccCCCC-EEEEEEccc
Confidence 8899999997432 33456678899999999999986321100 0112233333333566 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.+..... + ... ..++ ..++++||++|.|+.+
T Consensus 321 L~~~~~~~---~----~~~--~~~~----~~~v~ISAktG~GIde 352 (426)
T PRK11058 321 MLDDFEPR---I----DRD--EENK----PIRVWLSAQTGAGIPL 352 (426)
T ss_pred CCCchhHH---H----HHH--hcCC----CceEEEeCCCCCCHHH
Confidence 97421111 1 100 1121 1248899999999976
No 179
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.58 E-value=9.4e-15 Score=166.37 Aligned_cols=139 Identities=22% Similarity=0.187 Sum_probs=98.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|++|+|||||+|+|++....+ ....+|+|.+.....+..++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------v~~~~gtT~d~~~~~i~~~g~ 263 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI------------------------------VTDIAGTTRDVIEEHINLDGI 263 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCcccccEEEEEEECCe
Confidence 45799999999999999999999432111 122377888888888888899
Q ss_pred EEEEEeCCCccchH--------HHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 419 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 ~i~lIDTPGh~~f~--------~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.+.||||||+.++. ..+...+..+|++|+|+|++.+.. .+..+.+.. ..+.| +++|+||+|
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s--------~~~~~~l~~--~~~~p-iiiV~NK~D 332 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT--------EEDDEILEE--LKDKP-VIVVLNKAD 332 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC--------hhHHHHHHh--cCCCC-cEEEEEhhh
Confidence 99999999987642 234556788999999999987631 111222221 34566 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.... ... .. ...+++++||++|.|+.+
T Consensus 333 L~~~~--~~~----------~~-----~~~~~i~iSAktg~GI~~ 360 (449)
T PRK05291 333 LTGEI--DLE----------EE-----NGKPVIRISAKTGEGIDE 360 (449)
T ss_pred ccccc--hhh----------hc-----cCCceEEEEeeCCCCHHH
Confidence 97521 110 11 134679999999999976
No 180
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.58 E-value=5.3e-15 Score=131.07 Aligned_cols=84 Identities=36% Similarity=0.512 Sum_probs=78.8
Q ss_pred ceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccC--CeeeEEEeeeecccccceeccCCceEEEecccccccccC
Q 004202 569 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPS--GEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMS 645 (768)
Q Consensus 569 lr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~--~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~r 645 (768)
|+|+|+++|+++ .|++ ++|+|++|++++||+|+++|. +..++|++|++++.++++|.|||+|+|.|++++..++.+
T Consensus 1 ~r~~V~~v~~~~g~G~v-v~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~r 79 (87)
T cd03697 1 FLMPIEDVFSIPGRGTV-VTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVER 79 (87)
T ss_pred CEeeEEEEEeCCCcEEE-EEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCC
Confidence 689999999998 8988 899999999999999999996 568899999999999999999999999999999999999
Q ss_pred CcccccCC
Q 004202 646 GGVLCHPD 653 (768)
Q Consensus 646 G~VL~~~~ 653 (768)
|+||++++
T Consensus 80 G~vl~~~~ 87 (87)
T cd03697 80 GMVLAKPG 87 (87)
T ss_pred ccEEecCC
Confidence 99999763
No 181
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=1.4e-14 Score=161.91 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=98.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-e
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-Y 418 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-~ 418 (768)
...|+|||.+|||||||+|+|+.....+ ...+++|+......+.... .
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~v-------------------------------s~~p~TT~~p~~Giv~~~~~~ 207 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKV-------------------------------ADYPFTTLVPNLGVVRVDDER 207 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccc-------------------------------cCCCCCccCcEEEEEEeCCCc
Confidence 3469999999999999999999532211 1226778877777776664 4
Q ss_pred EEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-----cCCCeEEEEE
Q 004202 419 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAV 486 (768)
Q Consensus 419 ~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVVv 486 (768)
.++|+||||..+ +...+++.+..+|++|+|||++...-.. ...+....+..+.. .+.| +|||+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d----~~e~~~~l~~eL~~~~~~L~~kP-~IlVl 282 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSD----PVENARIIINELEKYSPKLAEKP-RWLVF 282 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccC----hHHHHHHHHHHHHhhhhhhcCCC-EEEEE
Confidence 699999999543 4456677888999999999987210000 01122222222222 2466 78999
Q ss_pred ecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 487 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
||+|+.. .+.+. +.+..+.+..++ ..+++++||+++.|+.+
T Consensus 283 NKiDl~~--~~el~---~~l~~l~~~~~~---~~~Vi~ISA~tg~GIde 323 (390)
T PRK12298 283 NKIDLLD--EEEAE---ERAKAIVEALGW---EGPVYLISAASGLGVKE 323 (390)
T ss_pred eCCccCC--hHHHH---HHHHHHHHHhCC---CCCEEEEECCCCcCHHH
Confidence 9999874 22222 222333333332 23679999999999976
No 182
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=1.9e-14 Score=163.92 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=100.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
....|+|||.+|||||||+++|+.....+ ...+++|+......+...+.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkI-------------------------------adypfTTl~P~lGvv~~~~~ 206 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKI-------------------------------ADYPFTTLVPNLGVVQAGDT 206 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccc-------------------------------cccCcccccceEEEEEECCe
Confidence 34689999999999999999999532211 11267788888888888888
Q ss_pred EEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCcc-ccccccchhhhHHHHHHH----------HHcCCC
Q 004202 419 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSF-EVGMNTAKGLTREHAQLI----------RSFGVD 480 (768)
Q Consensus 419 ~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~-e~~~~~~~~qt~e~l~ll----------~~lgip 480 (768)
.|+|+||||..+ +....++.+..+|++|+|||++...- ...+..+.....+...+. ...+.|
T Consensus 207 ~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP 286 (500)
T PRK12296 207 RFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERP 286 (500)
T ss_pred EEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCC
Confidence 999999999532 23445667788999999999974210 001111101111222222 123566
Q ss_pred eEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 481 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 481 ~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|||+||+|+.+. .+.. +.+...+...+ ++++++||++++|+.+
T Consensus 287 -~IVVlNKiDL~da-~el~----e~l~~~l~~~g-----~~Vf~ISA~tgeGLdE 330 (500)
T PRK12296 287 -RLVVLNKIDVPDA-RELA----EFVRPELEARG-----WPVFEVSAASREGLRE 330 (500)
T ss_pred -EEEEEECccchhh-HHHH----HHHHHHHHHcC-----CeEEEEECCCCCCHHH
Confidence 7999999999742 2222 22233333323 5789999999999976
No 183
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.58 E-value=2.5e-14 Score=145.37 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=92.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+|+|++|+|||||+++|++.... .....+.|++.....+...+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVY-------------------------------AEDQLFATLDPTTRRLRLPD 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhc-------------------------------cCCccceeccceeEEEEecC
Confidence 34589999999999999999999953100 00112345544444454444
Q ss_pred -eEEEEEeCCCccch--------HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEE
Q 004202 418 -YHVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVA 485 (768)
Q Consensus 418 -~~i~lIDTPGh~~f--------~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVV 485 (768)
..+.||||||+.+. +..++..+..+|++++|+|++.+.. ..+......++..+ ++| +++|
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~-------~~~~~~~~~~l~~~~~~~~~-viiV 159 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDY-------EEQIETVEKVLKELGAEDIP-MILV 159 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCCh-------hhHHHHHHHHHHHcCcCCCC-EEEE
Confidence 38999999997321 1223334668999999999987531 11222333344443 455 8999
Q ss_pred EecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 486 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 486 vNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+||+|+... .... ..+.. ...+++++||++|.|+.+
T Consensus 160 ~NK~Dl~~~--~~~~-------~~~~~-----~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 160 LNKIDLLDD--EELE-------ERLEA-----GRPDAVFISAKTGEGLDE 195 (204)
T ss_pred EEccccCCh--HHHH-------HHhhc-----CCCceEEEEcCCCCCHHH
Confidence 999999752 1111 11111 235789999999999966
No 184
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.58 E-value=2.8e-14 Score=140.63 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=91.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.++|+++|+.|+|||||+++|+... ...+..+.+..+.....+...+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR-------------------------------FPERTEATIGVDFRERTVEIDGER 50 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-------------------------------CCCccccceeEEEEEEEEEECCeE
Confidence 4799999999999999999998310 1111123333333333344444
Q ss_pred eEEEEEeCCCccchHHH-HHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEeccccc
Q 004202 418 YHVVVLDSPGHKDFVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~-~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv 492 (768)
..+.||||||+++|... ....+..+|++|+|+|++.+. .|.. ....+..+.. -.+| +|+|.||+|+.
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~----~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~ 122 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMA---SFHS----LPSWIEECEQHSLPNEVP-RILVGNKCDLR 122 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHH---HHHh----HHHHHHHHHHhcCCCCCC-EEEEEECccch
Confidence 67899999999988744 455577899999999998753 1221 1222222222 2467 89999999986
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeeccc---CCCccc
Q 004202 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE---NQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~t---G~gI~e 535 (768)
.... ...+.. ..+.+.. .++++++||++ +.|+.+
T Consensus 123 ~~~~-~~~~~~---~~~~~~~-----~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 123 EQIQ-VPTDLA---QRFADAH-----SMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred hhcC-CCHHHH---HHHHHHc-----CCcEEEEeccCCcCCCCHHH
Confidence 4211 111112 2222222 25789999999 566644
No 185
>PTZ00369 Ras-like protein; Provisional
Probab=99.58 E-value=1.4e-14 Score=145.78 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=94.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|..|+|||||++++++.. ... .. ....+.+. .....+.....
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~--~~~-------------------------~~--~~t~~~~~-~~~~~~~~~~~ 53 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNH--FID-------------------------EY--DPTIEDSY-RKQCVIDEETC 53 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC--CCc-------------------------Cc--CCchhhEE-EEEEEECCEEE
Confidence 45899999999999999999998421 000 00 00001111 11112233345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||+++|...+...+..+|++|+|+|+++.. .|+.+.....+.......-++| +|+|.||+|+.+...
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~-- 127 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS---SFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQ-- 127 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccc--
Confidence 6889999999999988888889999999999998752 2222211112222211122566 899999999864211
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ..+...+.+..+ ++++++||++|.|+.+
T Consensus 128 i~--~~~~~~~~~~~~-----~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 128 VS--TGEGQELAKSFG-----IPFLETSAKQRVNVDE 157 (189)
T ss_pred cC--HHHHHHHHHHhC-----CEEEEeeCCCCCCHHH
Confidence 11 111222222222 4789999999999976
No 186
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=4.1e-14 Score=142.64 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=93.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--CCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~~~ 418 (768)
++|+++|..|+|||||+++|+...-.. .+..+.+..+.....+.. ...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 50 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLN------------------------------GNFIATVGIDFRNKVVTVDGVKV 50 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------cCcCCcccceeEEEEEEECCEEE
Confidence 479999999999999999998421100 001122222222222222 345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+.+|.......+..+|++|+|+|++... .|+. ....+..+.. .++| ++||+||+|+....
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~---s~~~----~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~ 122 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKA---SFDN----IRAWLTEIKEYAQEDVV-IMLLGNKADMSGER 122 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHH---HHHH----HHHHHHHHHHhCCCCCc-EEEEEEcccchhcc
Confidence 7889999999998887778888999999999998742 2221 1222222332 2566 89999999986421
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... ..+...+.+..+ .+++++||++|.|+.+
T Consensus 123 ~~~----~~~~~~l~~~~~-----~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 123 VVK----REDGERLAKEYG-----VPFMETSAKTGLNVEL 153 (191)
T ss_pred ccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 111 122233333333 4789999999999976
No 187
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.58 E-value=2.6e-14 Score=138.40 Aligned_cols=150 Identities=16% Similarity=0.217 Sum_probs=94.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE--EEEeeCCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--AYFDSKNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~--~~~~~~~~ 418 (768)
.+|+++|.+|+|||||+++|++.. .... . .+++.+... ..+.....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~--~~~~-----------------------------~-~~~~~~~~~~~~~~~~~~~ 48 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE--FVED-----------------------------Y-EPTKADSYRKKVVLDGEDV 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--Cccc-----------------------------c-CCcchhhEEEEEEECCEEE
Confidence 479999999999999999999421 0000 0 011111111 12222346
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||+.+|.......+..+|.+++|+|...+. .|.....+....+......++| +++|+||+|+.+.....
T Consensus 49 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~~ 124 (164)
T cd04139 49 QLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME---SFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQVS 124 (164)
T ss_pred EEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccccC
Confidence 7899999999999888888899999999999988642 2222212222222222225677 89999999997521111
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .+...+.+.++ .+++++||++|+|+.+
T Consensus 125 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 125 S----EEAANLARQWG-----VPYVETSAKTRQNVEK 152 (164)
T ss_pred H----HHHHHHHHHhC-----CeEEEeeCCCCCCHHH
Confidence 1 12222333333 4789999999999976
No 188
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.58 E-value=2.4e-14 Score=143.53 Aligned_cols=150 Identities=18% Similarity=0.207 Sum_probs=94.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|..++|||||+.+|... ... . ..+ |+......+...+.
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~--~~~-------------------------~-----~~~--T~~~~~~~~~~~~~ 61 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLG--EVV-------------------------T-----TIP--TIGFNVETVEYKNL 61 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--Ccc-------------------------c-----cCC--ccccceEEEEECCE
Confidence 3479999999999999999999621 000 0 001 11111223445778
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+++|...+...+..+|++|+|+|+++.. ++.. ...++..++.. ..+| ++||.||.|+.+..
T Consensus 62 ~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~---s~~~---~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~ 134 (182)
T PTZ00133 62 KFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE---RIGD---AREELERMLSEDELRDAV-LLVFANKQDLPNAM 134 (182)
T ss_pred EEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH---HHHH---HHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCC
Confidence 9999999999998888888899999999999998631 1221 11122222221 2355 89999999986421
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..+++...+. ...+....+.++++||++|+|+.+
T Consensus 135 --~~~~i~~~l~----~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 135 --STTEVTEKLG----LHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred --CHHHHHHHhC----CCcccCCcEEEEeeeCCCCCCHHH
Confidence 1122222221 111222335677899999999976
No 189
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.58 E-value=1.7e-14 Score=146.40 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=91.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--eE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--YH 419 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~~ 419 (768)
+|+++|+.|+|||||+++|++.. ... ....++.+.....+...+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FEP------------------------------KYRRTVEEMHRKEYEVGGVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc------------------------------cCCCchhhheeEEEEECCEEEE
Confidence 58999999999999999998421 000 001111112222333334 57
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhH
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 499 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~ 499 (768)
+.||||||+.+|.......+..+|++|+|+|++++. .++.......+.+......++| +|||+||+|+... ....
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~-~~~v 123 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPE---SFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEE-ERQV 123 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEEccccccc-cccc
Confidence 889999999998877777888999999999998742 2221111111222222224677 8999999998752 1111
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 500 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 500 ~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. . .+...... .. ...+++++||++|.|+.+
T Consensus 124 ~-~-~~~~~~~~-~~---~~~~~~~~Sa~~g~gv~~ 153 (198)
T cd04147 124 P-A-KDALSTVE-LD---WNCGFVETSAKDNENVLE 153 (198)
T ss_pred c-H-HHHHHHHH-hh---cCCcEEEecCCCCCCHHH
Confidence 1 0 11111111 11 124789999999999976
No 190
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.57 E-value=4.6e-14 Score=138.31 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=91.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
.+|+++|..|+|||||++++++.. ..... ...-+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~--f~~~~---------------------------~~t~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FRESY---------------------------IPTIEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCCc---------------------------CCcchheE-EEEEEECCEEEEE
Confidence 689999999999999999998421 10000 00000011 1111222344678
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH------cCCCeEEEEEeccccccc
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~------lgip~iIVVvNKmDlv~~ 494 (768)
.||||||+++|.......+..+|++|+|+|.+... .|+ .....+..+.. .++| +++|.||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~----~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQ---SLE----ELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHK 123 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHH---HHH----HHHHHHHHHHHHhcCCCCCCC-EEEEEECcccccc
Confidence 89999999999877777788999999999998752 111 12222222332 3466 8999999998642
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. .. ..+...+.+.. .++++++||++|+|+.+
T Consensus 124 ~~-v~---~~~~~~~~~~~-----~~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 124 RE-VS---SNEGAACATEW-----NCAFMETSAKTNHNVQE 155 (165)
T ss_pred Ce-ec---HHHHHHHHHHh-----CCcEEEeecCCCCCHHH
Confidence 11 10 11112222222 25789999999999976
No 191
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=5.3e-14 Score=141.03 Aligned_cols=151 Identities=20% Similarity=0.272 Sum_probs=106.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..+-|+++|+.|+|||||+|+|++..... .....+|.|..+.+..+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------------------------rtSktPGrTq~iNff~~~~--- 70 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLA-----------------------------RTSKTPGRTQLINFFEVDD--- 70 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCccee-----------------------------ecCCCCCccceeEEEEecC---
Confidence 45789999999999999999999643221 2234589999887665533
Q ss_pred EEEEEeCCC-------------ccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEE
Q 004202 419 HVVVLDSPG-------------HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 485 (768)
Q Consensus 419 ~i~lIDTPG-------------h~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVV 485 (768)
.+.|+|.|| ..+++...+..-....+++++||+.++. ....++.+.++...++| ++||
T Consensus 71 ~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~--------~~~D~em~~~l~~~~i~-~~vv 141 (200)
T COG0218 71 ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP--------KDLDREMIEFLLELGIP-VIVV 141 (200)
T ss_pred cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCC--------cHHHHHHHHHHHHcCCC-eEEE
Confidence 288999999 1223333344445578999999999974 45678999999999999 8999
Q ss_pred EecccccccchhhHHHHHHHHhHHHhhcCCCCC-CCcEEEeecccCCCccc
Q 004202 486 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVT 535 (768)
Q Consensus 486 vNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~-~i~~IpVSA~tG~gI~e 535 (768)
+||+|.+.. .........+...+ .+... ...++..|+.++.|+.+
T Consensus 142 ~tK~DKi~~--~~~~k~l~~v~~~l---~~~~~~~~~~~~~ss~~k~Gi~~ 187 (200)
T COG0218 142 LTKADKLKK--SERNKQLNKVAEEL---KKPPPDDQWVVLFSSLKKKGIDE 187 (200)
T ss_pred EEccccCCh--hHHHHHHHHHHHHh---cCCCCccceEEEEecccccCHHH
Confidence 999999963 33333333333322 22211 11278899999999866
No 192
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.57 E-value=4.8e-14 Score=141.76 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=92.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
+||+++|.+|+|||||+++|++..-.. .+..+.+........+..++ .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 50 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV------------------------------GPYQNTIGAAFVAKRMVVGERVV 50 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC------------------------------cCcccceeeEEEEEEEEECCEEE
Confidence 489999999999999999998421000 00011111122222334444 4
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecccccccch
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~~s~ 496 (768)
.+.||||||..+|.......+..+|++|+|+|++... .|+ .....+..+... ++| +++|+||+|+.....
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~----~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~ 122 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSS---SFE----RAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDR 122 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHH---HHH----HHHHHHHHHHhcCCCCC-EEEEEEccccccccc
Confidence 5679999999888776666778999999999998641 111 112222333332 566 899999999864221
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
........++..+....+ ++++++||++|.|+.+
T Consensus 123 ~~~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 156 (193)
T cd04118 123 SLRQVDFHDVQDFADEIK-----AQHFETSSKTGQNVDE 156 (193)
T ss_pred ccCccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 110101123333333332 4689999999999976
No 193
>PLN03118 Rab family protein; Provisional
Probab=99.57 E-value=4e-14 Score=144.99 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=94.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--C
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--K 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~ 416 (768)
..++|+|+|+.|+|||||+++|++.. + .+..+.++.+.....+.. .
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~--~------------------------------~~~~~t~~~~~~~~~~~~~~~ 60 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSS--V------------------------------EDLAPTIGVDFKIKQLTVGGK 60 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC--C------------------------------CCcCCCceeEEEEEEEEECCE
Confidence 46899999999999999999998421 0 001122222322222333 3
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-HcCCCeEEEEEecccccccc
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~-~lgip~iIVVvNKmDlv~~s 495 (768)
...+.||||||+++|.......+..+|++|||+|++... .|..+.......+.... ..+++ +|+|+||+|+....
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~---sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~ 136 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRE---TFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESER 136 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccC
Confidence 467899999999999888888889999999999998742 12111111111111111 12455 78999999987421
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .++...+.+..+ ++++++||++|.|+.+
T Consensus 137 ~i~----~~~~~~~~~~~~-----~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 137 DVS----REEGMALAKEHG-----CLFLECSAKTRENVEQ 167 (211)
T ss_pred ccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 111 112223333322 4689999999999976
No 194
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.57 E-value=7.4e-14 Score=141.84 Aligned_cols=148 Identities=20% Similarity=0.178 Sum_probs=96.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.++|+++|..|+|||||+++|++.. + ..+..+.++.+.....+...+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 54 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNT--F-----------------------------SGSYITTIGVDFKIRTVEINGER 54 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--C-----------------------------CCCcCccccceeEEEEEEECCEE
Confidence 5899999999999999999998421 0 011112233333334444443
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~~s 495 (768)
..+.||||||++.|...+...+..+|++|+|+|+++.. .|. .....+..+... .+| ++||+||+|+....
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~---s~~----~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~ 126 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SFV----NVKRWLQEIEQNCDDVC-KVLVGNKNDDPERK 126 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHH---HHH----HHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 56889999999999888888889999999999998742 222 122222222222 355 89999999987521
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .. ..+...+.+..+ ++++++||++|.|+.+
T Consensus 127 ~-~~---~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 127 V-VE---TEDAYKFAGQMG-----ISLFETSAKENINVEE 157 (199)
T ss_pred c-cC---HHHHHHHHHHcC-----CEEEEEECCCCcCHHH
Confidence 1 11 122233333333 5789999999999976
No 195
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.57 E-value=2.4e-14 Score=139.36 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=90.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--Ce
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~ 418 (768)
++|+++|.+|+|||||++++++. .... +..+ ++.+.....+..+ ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~--~~~~-----------------------------~~~~-t~~~~~~~~~~~~~~~~ 49 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSG--TFIE-----------------------------KYDP-TIEDFYRKEIEVDSSPS 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCC-chhheEEEEEEECCEEE
Confidence 68999999999999999999842 1100 0001 0001111122223 34
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||+++|...+...+..+|++|+|+|.++.. .|+.+..+..+........++| +++|.||+|+.....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~-- 123 (163)
T cd04176 50 VLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQ---TFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESERE-- 123 (163)
T ss_pred EEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCc--
Confidence 5779999999999888878889999999999998742 1221111111111111114677 899999999864211
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ..+...+.+..+ ++++++||++|.|+.+
T Consensus 124 ~~--~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 153 (163)
T cd04176 124 VS--SAEGRALAEEWG-----CPFMETSAKSKTMVNE 153 (163)
T ss_pred cC--HHHHHHHHHHhC-----CEEEEecCCCCCCHHH
Confidence 11 111222222222 4789999999999976
No 196
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.56 E-value=7.5e-14 Score=141.26 Aligned_cols=151 Identities=18% Similarity=0.201 Sum_probs=99.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+++|..++|||||+.+|... . ...+..+.++.+.....+..++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~--~-----------------------------~~~~~~~t~~~~~~~~~i~~~~~ 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDG--S-----------------------------TESPYGYNMGIDYKTTTILLDGR 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC--C-----------------------------CCCCCCCcceeEEEEEEEEECCE
Confidence 3589999999999999999999831 1 1111112233333333333333
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
..+.||||||+++|...+...+..+|++|||+|.+.. .+|+.+..+..+... ..-++| +|||.||+|+.....
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~---~Sf~~~~~w~~~i~~--~~~~~p-iilVGNK~DL~~~~~ 127 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNR---WSFDGIDRWIKEIDE--HAPGVP-KILVGNRLHLAFKRQ 127 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH---HHHHHHHHHHHHHHH--hCCCCC-EEEEEECccchhccC
Confidence 6788999999999988887888999999999999874 334433222222211 113566 899999999964211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
-. .++...+.+..+ ++++.+||++|.||.+
T Consensus 128 v~----~~~~~~~a~~~~-----~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 128 VA----TEQAQAYAERNG-----MTFFEVSPLCNFNITE 157 (189)
T ss_pred CC----HHHHHHHHHHcC-----CEEEEecCCCCCCHHH
Confidence 11 233444444433 4789999999999976
No 197
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.1e-14 Score=141.77 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=99.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-- 415 (768)
....||+++|..++|||||+-|+.. +.+.+..++.|....-...+..
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk-------------------------------~~F~e~~e~TIGaaF~tktv~~~~ 51 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVK-------------------------------DQFHENIEPTIGAAFLTKTVTVDD 51 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhh-------------------------------CccccccccccccEEEEEEEEeCC
Confidence 3568999999999999999999872 1122222222222211122222
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEE--EEEecccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI--VAVNKMDAVQ 493 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iI--VVvNKmDlv~ 493 (768)
....+.||||+|+++|-...-.++++|++||+|.|+++. .+|..+ +.-+..+....-|.++ +|.||+|+.+
T Consensus 52 ~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~---~SF~~a----K~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 52 NTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDE---ESFEKA----KNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred cEEEEEEEEcCCcccccccccceecCCcEEEEEEecccH---HHHHHH----HHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 346788999999999988888899999999999999973 344333 2222333333335444 4889999986
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..+-.+ ++...+....| ..|+.+||++|.|+.+
T Consensus 125 ~R~V~~----~ea~~yAe~~g-----ll~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 125 RREVEF----EEAQAYAESQG-----LLFFETSAKTGENVNE 157 (200)
T ss_pred cccccH----HHHHHHHHhcC-----CEEEEEecccccCHHH
Confidence 322233 33444544433 5899999999999976
No 198
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.56 E-value=5.2e-14 Score=138.35 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=94.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEE--EeeCCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY--FDSKNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~--~~~~~~ 418 (768)
++|+++|.+|+|||||+++|++..-. . . ..+ ++.+..... +.....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~-------------------------~----~~~-t~~~~~~~~~~~~~~~~ 49 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--E-------------------------S----YDP-TIEDSYRKQVEIDGRQC 49 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--c-------------------------c----cCC-cchheEEEEEEECCEEE
Confidence 58999999999999999999842110 0 0 000 011111122 222335
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.+|||||+.+|.......+..+|++|+|+|.+... .++....+..+........++| +++|.||+|+.......
T Consensus 50 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~~ 125 (168)
T cd04177 50 DLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA---SLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQVS 125 (168)
T ss_pred EEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCccC
Confidence 7889999999999888888888999999999998742 2222212222222222234677 88999999986421111
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.++...+.+.++ .++++++||++|.|+.+
T Consensus 126 ----~~~~~~~~~~~~----~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 126 ----REDGVSLSQQWG----NVPFYETSARKRTNVDE 154 (168)
T ss_pred ----HHHHHHHHHHcC----CceEEEeeCCCCCCHHH
Confidence 112223333332 25789999999999976
No 199
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.55 E-value=6e-14 Score=135.33 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=92.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--CCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~~~ 418 (768)
.||+++|..|+|||||+++|++..-. ....+.++.......+.. ...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN-------------------------------EKHESTTQASFFQKTVNIGGKRI 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCcCCccceeEEEEEEEECCEEE
Confidence 48999999999999999999942110 001112222222222332 234
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.+|||||+..|.......+..+|++|+|+|++++.. +. .....+..+.. .++| +++|+||+|+....
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~----~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~ 121 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADS---FQ----KVKKWIKELKQMRGNNIS-LVIVGNKIDLERQR 121 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 68899999999887777777788999999999987531 11 11111111221 2456 89999999987422
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+... +++..+.+..+ .+++++|+++|.|+.+
T Consensus 122 ~~~~----~~~~~~~~~~~-----~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 122 VVSK----SEAEEYAKSVG-----AKHFETSAKTGKGIEE 152 (162)
T ss_pred CCCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1111 22222333333 4679999999999976
No 200
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.55 E-value=4.2e-14 Score=142.43 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=90.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--eE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--YH 419 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~~ 419 (768)
+|+++|..|+|||||+++|+.. .+... ..+.+. +.....+...+ ..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~--~f~~~-----------------------------~~~t~~-~~~~~~~~~~~~~~~ 48 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLN--HFVET-----------------------------YDPTIE-DSYRKQVVVDGQPCM 48 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--CCCcc-----------------------------CCCchH-hhEEEEEEECCEEEE
Confidence 4899999999999999999842 11000 000000 00011122233 45
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccch
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s~ 496 (768)
+.||||||+++|.......+..+|++|+|+|.+... +|+.+. .....+..... .++| +|+|.||+|+.....
T Consensus 49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~---s~~~~~-~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~~ 123 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRS---TFERVE-RFREQIQRVKDESAADVP-IMIVGNKCDKVYERE 123 (190)
T ss_pred EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHH---HHHHHH-HHHHHHHHHhcccCCCCC-EEEEEEChhccccCc
Confidence 889999999999888888899999999999998742 222211 11111211111 2466 899999999974211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
-.. .+...+.+..+ ++++++||++|.|+.+
T Consensus 124 v~~----~~~~~~~~~~~-----~~~~e~SAk~~~~v~~ 153 (190)
T cd04144 124 VST----EEGAALARRLG-----CEFIEASAKTNVNVER 153 (190)
T ss_pred cCH----HHHHHHHHHhC-----CEEEEecCCCCCCHHH
Confidence 111 11222333333 4789999999999976
No 201
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=4e-14 Score=159.19 Aligned_cols=147 Identities=21% Similarity=0.232 Sum_probs=96.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-Ce
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NY 418 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-~~ 418 (768)
...|+|||.+|||||||+++|+.....+. ..+++|+......+... +.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa-------------------------------~ypfTTl~PnlG~v~~~~~~ 206 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIA-------------------------------NYHFTTLVPNLGVVETDDGR 206 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccc-------------------------------cCCcceeceEEEEEEEeCCc
Confidence 45799999999999999999995322211 12567777777666666 78
Q ss_pred EEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-----cCCCeEEEEE
Q 004202 419 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAV 486 (768)
Q Consensus 419 ~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-----lgip~iIVVv 486 (768)
.++|+||||..+ +....++.+..+|++|+|||++.......+ .........+.. .+.| +|||+
T Consensus 207 ~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~----e~~~~i~~EL~~y~~~L~~kP-~IVV~ 281 (424)
T PRK12297 207 SFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI----EDYEKINKELKLYNPRLLERP-QIVVA 281 (424)
T ss_pred eEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChH----HHHHHHHHHHhhhchhccCCc-EEEEE
Confidence 899999999642 345567778889999999999752100111 111222222222 3566 78999
Q ss_pred ecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 487 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
||+|+... .+.+ ..+.+.++ .+++++||++++|+.+
T Consensus 282 NK~DL~~~-~e~l-------~~l~~~l~-----~~i~~iSA~tgeGI~e 317 (424)
T PRK12297 282 NKMDLPEA-EENL-------EEFKEKLG-----PKVFPISALTGQGLDE 317 (424)
T ss_pred eCCCCcCC-HHHH-------HHHHHHhC-----CcEEEEeCCCCCCHHH
Confidence 99998431 2222 22222222 3689999999999976
No 202
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.55 E-value=6e-14 Score=139.23 Aligned_cols=151 Identities=14% Similarity=0.172 Sum_probs=92.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEE-EEEEEeeCCe
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKNY 418 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~-~~~~~~~~~~ 418 (768)
.++|+++|..|+|||||+.+++.. ... .+..+.+.... ....+.....
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~--~f~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISH--SFP-----------------------------DYHDPTIEDAYKQQARIDNEPA 50 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhC--CCC-----------------------------CCcCCcccceEEEEEEECCEEE
Confidence 368999999999999999999842 110 00001111001 0111222335
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-HcCCCeEEEEEecccccccchh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~-~lgip~iIVVvNKmDlv~~s~e 497 (768)
.+.||||||..+|...+...+..+|++|+|+|.++.. +|..+.. ....+.... ..++| +|||.||+|+.+...
T Consensus 51 ~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~---Sf~~~~~-~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~~- 124 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRH---SFQEASE-FKKLITRVRLTEDIP-LVLVGNKVDLESQRQ- 124 (172)
T ss_pred EEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchh---HHHHHHH-HHHHHHHhcCCCCCC-EEEEEEChhhhhcCc-
Confidence 6889999999999888888889999999999998752 2322111 111121111 13566 899999999864211
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. .++...+.+..+ ++++++||++|.||.+
T Consensus 125 -v~--~~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 125 -VT--TEEGRNLAREFN-----CPFFETSAALRHYIDD 154 (172)
T ss_pred -cC--HHHHHHHHHHhC-----CEEEEEecCCCCCHHH
Confidence 10 112223333333 5789999999999976
No 203
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.55 E-value=4.5e-14 Score=138.95 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=92.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--Ce
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~ 418 (768)
++|+++|++++|||||+++|++.. .. .+..+. +.+.....+..+ .+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~--~~-----------------------------~~~~~t-~~~~~~~~~~~~~~~~ 48 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA--FP-----------------------------EEYVPT-VFDHYAVSVTVGGKQY 48 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CC-----------------------------CCCCCc-eeeeeEEEEEECCEEE
Confidence 489999999999999999998421 00 000011 111111122233 35
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||+.+|.......+..+|++|+|+|..+.. .|+.+..+..+.+.. ...++| ++||+||+|+.+... .
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~---s~~~~~~~~~~~l~~-~~~~~p-iivv~nK~Dl~~~~~-~ 122 (174)
T cd04135 49 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA---SFQNVKEEWVPELKE-YAPNVP-YLLVGTQIDLRDDPK-T 122 (174)
T ss_pred EEEEEeCCCcccccccccccCCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHh-hCCCCC-EEEEeEchhhhcChh-h
Confidence 5789999999998776666778899999999998742 222111111111111 124566 899999999865321 1
Q ss_pred HHHH---------HHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+ .++...+.+..+. .+++++||++|.|+.+
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~gi~~ 164 (174)
T cd04135 123 LARLNDMKEKPVTVEQGQKLAKEIGA----HCYVECSALTQKGLKT 164 (174)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcCC----CEEEEecCCcCCCHHH
Confidence 1100 1223334444442 3689999999999976
No 204
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.55 E-value=6.8e-14 Score=136.78 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--eCCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~--~~~~ 418 (768)
++|+++|..|+|||||+++|++..-. .+. ..+..+.....+. ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-------------------------------~~~-~~~~~~~~~~~~~~~~~~~ 48 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-------------------------------TEY-VPTVFDNYSATVTVDGKQV 48 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCC-CCceeeeeEEEEEECCEEE
Confidence 58999999999999999999953110 000 0111111111222 2345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecccccccch
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~~s~ 496 (768)
.+.||||||+.+|.......+..+|++++|+|+++.. +|. ....+.+..+... ++| +++|+||+|+.....
T Consensus 49 ~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 49 NLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPS---SFE---NVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDEN 121 (171)
T ss_pred EEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchh
Confidence 7899999999988666666678899999999998731 111 1122223333222 466 899999999986321
Q ss_pred hhHH-------H-HHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFD-------S-IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~-------~-i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... . ...+...+....++ .+++++||++|.|+.+
T Consensus 122 -~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~ 163 (171)
T cd00157 122 -TLKKLEKGKEPITPEEGEKLAKEIGA----IGYMECSALTQEGVKE 163 (171)
T ss_pred -hhhhcccCCCccCHHHHHHHHHHhCC----eEEEEeecCCCCCHHH
Confidence 110 0 12233334444332 3789999999999976
No 205
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.54 E-value=7.8e-14 Score=139.34 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=92.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee---CC
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---KN 417 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~---~~ 417 (768)
++|+++|..|+|||||+++|++.. . ..+..+.+..+.. ..+.. ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~-~~i~~~~~~~ 48 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK--F-----------------------------PEEYVPTVFENYV-TNIQGPNGKI 48 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc--C-----------------------------CCCCCCeeeeeeE-EEEEecCCcE
Confidence 489999999999999999998421 0 0011111111111 11222 23
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH--HcCCCeEEEEEecccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~--~lgip~iIVVvNKmDlv~~s 495 (768)
..+.||||||+++|.......+..+|++|+|+|+++.. .|+.+. ...+.... ..++| +|+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~~~~---~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 121 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPT---SLDNVE---DKWFPEVNHFCPGTP-IMLVGLKTDLRKDK 121 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHH---HHHHHH---HHHHHHHHHhCCCCC-EEEEEeChhhhhCc
Confidence 56889999999999887777889999999999998742 222110 11111111 13566 89999999986421
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.........+..++.+..++ .+++++||++|.|+.+
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 122 NLDRKVTPAQAESVAKKQGA----FAYLECSAKTMENVEE 157 (187)
T ss_pred cccCCcCHHHHHHHHHHcCC----cEEEEccCCCCCCHHH
Confidence 10000012233334444332 2689999999999976
No 206
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.54 E-value=3.2e-14 Score=140.30 Aligned_cols=147 Identities=20% Similarity=0.222 Sum_probs=93.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|..++|||||+++|.+. .. .+ ...|+......+..++..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~-----------------------------~~--~~~t~g~~~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IP-----------------------------KK--VAPTVGFTPTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CC-----------------------------cc--ccCcccceEEEEEECCEEEE
Confidence 4899999999999999999842 00 00 01122222334556788999
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEecccccccchh
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv~~s~e 497 (768)
|+||||+.+|...+...+..+|++|+|+|++... .+. .....+..+.. .++| +++|+||+|+.+..
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~---s~~----~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-- 116 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD---RVQ----EVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-- 116 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh---HHH----HHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC--
Confidence 9999999999888888899999999999998741 111 12222222211 3566 89999999987531
Q ss_pred hHHHHHHHH--hHHHhhcCCCCCCCcEEEeecccC------CCccc
Q 004202 498 RFDSIKVQL--GTFLRSCGFKDASLTWIPLSALEN------QNLVT 535 (768)
Q Consensus 498 ~~~~i~~el--~~~lk~~g~~~~~i~~IpVSA~tG------~gI~e 535 (768)
...++.+.+ ..+.+.. ...+.++++||++| .|+.+
T Consensus 117 ~~~~i~~~~~l~~~~~~~---~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 117 LGADVIEYLSLEKLVNEN---KSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred CHHHHHHhcCcccccCCC---CceEEEEEeEceeCCCCccccCHHH
Confidence 122222222 1111111 12357899999998 67754
No 207
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.54 E-value=1.4e-13 Score=133.90 Aligned_cols=149 Identities=18% Similarity=0.176 Sum_probs=92.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEE--Ee-eCC
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY--FD-SKN 417 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~--~~-~~~ 417 (768)
++|+++|..++|||||+++|....... ..+..+.+..+..... +. ...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 51 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVF-----------------------------PKNYLMTTGCDFVVKEVPVDTDNT 51 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CccCCCceEEEEEEEEEEeCCCCE
Confidence 489999999999999999998421111 1111122222222222 22 244
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s 495 (768)
..+.||||||++.|...+...+..+|++|+|+|+++.. .+. .....+..+.. .++| +|+|+||+|+.+..
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~----~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 123 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKA---SFE----NCSRWVNKVRTASKHMP-GVLVGNKMDLADKA 123 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHH---HHH----HHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 78999999999988887778888999999999998642 111 11112222222 3566 89999999997531
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.. .... ..+.... ..+++++||++|.|+.+
T Consensus 124 ~~~-~~~~---~~~~~~~-----~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 124 EVT-DAQA---QAFAQAN-----QLKFFKTSALRGVGYEE 154 (164)
T ss_pred CCC-HHHH---HHHHHHc-----CCeEEEEeCCCCCChHH
Confidence 111 1111 1111122 24689999999999976
No 208
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.54 E-value=2e-14 Score=126.19 Aligned_cols=82 Identities=34% Similarity=0.577 Sum_probs=78.2
Q ss_pred ceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCc
Q 004202 569 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 647 (768)
Q Consensus 569 lr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~ 647 (768)
|||+|+++|+++ .|++ ++|+|++|++++|+++.++|++..++|++|+.++.++++|.|||.|+|.|++++..++.+|+
T Consensus 1 lr~~i~~~~~~~~~g~v-v~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~ 79 (83)
T cd03696 1 FRLPIDRVFTVKGQGTV-VTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGD 79 (83)
T ss_pred CEEEEEEEEEcCCcEEE-EEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCcc
Confidence 689999999988 8888 89999999999999999999999999999999999999999999999999999888999999
Q ss_pred cccc
Q 004202 648 VLCH 651 (768)
Q Consensus 648 VL~~ 651 (768)
+|+.
T Consensus 80 vl~~ 83 (83)
T cd03696 80 VLSS 83 (83)
T ss_pred EEcC
Confidence 9873
No 209
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.54 E-value=3.2e-14 Score=140.03 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=93.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEEE
Q 004202 343 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 422 (768)
Q Consensus 343 VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~l 422 (768)
|+++|..|+|||||+++|+.... .. +..+ |+......+..++..+.|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~--~~-----------------------------~~~p--t~g~~~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS--LE-----------------------------SVVP--TTGFNSVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC--cc-----------------------------cccc--cCCcceEEEeeCCeEEEE
Confidence 78999999999999999984210 00 0001 111112334557789999
Q ss_pred EeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHH-HHHH-cCCCeEEEEEecccccccchhhHH
Q 004202 423 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRS-FGVDQLIVAVNKMDAVQYSKDRFD 500 (768)
Q Consensus 423 IDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~-ll~~-lgip~iIVVvNKmDlv~~s~e~~~ 500 (768)
|||||+.+|...+...+..+|++|+|+|+++.. .+. ..++.+. ++.. -++| +++|.||+|+... ....
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~---s~~----~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~--~~~~ 118 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE---RLP----LARQELHQLLQHPPDLP-LVVLANKQDLPAA--RSVQ 118 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHH---HHH----HHHHHHHHHHhCCCCCc-EEEEEeCcCCcCC--CCHH
Confidence 999999999888888899999999999998742 111 1222222 2221 3566 8999999998652 2222
Q ss_pred HHHHHH--hHHHhhcCCCCCCCcEEEeeccc------CCCccc
Q 004202 501 SIKVQL--GTFLRSCGFKDASLTWIPLSALE------NQNLVT 535 (768)
Q Consensus 501 ~i~~el--~~~lk~~g~~~~~i~~IpVSA~t------G~gI~e 535 (768)
.+...+ ..+.+ ...+.++++||++ ++|+.+
T Consensus 119 ~i~~~~~~~~~~~-----~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 119 EIHKELELEPIAR-----GRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred HHHHHhCChhhcC-----CCceEEEEeeecCCCChhHHHHHHH
Confidence 222222 22211 2346789999998 888865
No 210
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=8.3e-14 Score=143.12 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=95.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee---C
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---K 416 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~---~ 416 (768)
.++|+++|..|+|||||+++|++..- .....+.++.+.....+.. .
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~-------------------------------~~~~~~ti~~d~~~~~i~~~~~~ 50 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRF-------------------------------AEVSDPTVGVDFFSRLIEIEPGV 50 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-------------------------------CCCCCceeceEEEEEEEEECCCC
Confidence 37899999999999999999984210 0011122333333333332 2
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
...+.||||||++.|.......+..+|++|+|+|.++.. .|+.+..+..+.........++ ++||.||+|+.+..
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~---Sf~~l~~~~~~i~~~~~~~~~~-iilvgNK~Dl~~~~- 125 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRE---SFEHVHDWLEEARSHIQPHRPV-FILVGHKCDLESQR- 125 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCe-EEEEEEcccccccc-
Confidence 357889999999999888888889999999999998742 2322211111111111111233 78899999987521
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .++...+.+.++ ++++++||++|.|+.+
T Consensus 126 ~v~---~~~~~~~~~~~~-----~~~~e~Sak~g~~v~e 156 (211)
T cd04111 126 QVT---REEAEKLAKDLG-----MKYIETSARTGDNVEE 156 (211)
T ss_pred ccC---HHHHHHHHHHhC-----CEEEEEeCCCCCCHHH
Confidence 111 122233333333 5789999999999976
No 211
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.54 E-value=7.4e-14 Score=137.60 Aligned_cols=145 Identities=19% Similarity=0.231 Sum_probs=90.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--CCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~~~ 418 (768)
.+|+++|..|+|||||+++|+.. .. .....+.+..+.....+.. ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~--~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTG--EF-----------------------------EKKYVATLGVEVHPLDFHTNRGKI 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CC-----------------------------CCCCCCceeeEEEEEEEEECCEEE
Confidence 47999999999999999999832 10 0011122222222222322 346
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-c-CCCeEEEEEecccccccch
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F-GVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-l-gip~iIVVvNKmDlv~~s~ 496 (768)
.+.+|||||+++|.......+..+|++|+|+|++.+. ++..+ ...+..+.. . ++| +|+|.||+|+.....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~----~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~~ 121 (166)
T cd00877 50 RFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRV---TYKNV----PNWHRDLVRVCGNIP-IVLCGNKVDIKDRKV 121 (166)
T ss_pred EEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHH---HHHHH----HHHHHHHHHhCCCCc-EEEEEEchhcccccC
Confidence 7889999999987765566778899999999998752 12111 111122221 2 577 899999999973211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. . +..++.+. ...+++++||++|.|+.+
T Consensus 122 -~-~----~~~~~~~~-----~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 122 -K-A----KQITFHRK-----KNLQYYEISAKSNYNFEK 149 (166)
T ss_pred -C-H----HHHHHHHH-----cCCEEEEEeCCCCCChHH
Confidence 1 1 11122221 235789999999999976
No 212
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.53 E-value=1.2e-13 Score=145.51 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=92.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--Ce
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~ 418 (768)
.+|+++|..|+|||||+++|++. ... .+..+ ++-+.....+..+ .+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~--~f~-----------------------------~~y~p-Ti~d~~~k~~~i~~~~~ 48 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGG--RFE-----------------------------EQYTP-TIEDFHRKLYSIRGEVY 48 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcC--CCC-----------------------------CCCCC-ChhHhEEEEEEECCEEE
Confidence 37999999999999999999832 100 00001 1111222223333 36
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHH--------HHcCCCeEEEEEeccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI--------RSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll--------~~lgip~iIVVvNKmD 490 (768)
.+.||||+|+++|.......+..+|++|||+|.+... .|+.+.....+.+..- ...++| +|||+||+|
T Consensus 49 ~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~---Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~D 124 (247)
T cd04143 49 QLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRE---SFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKAD 124 (247)
T ss_pred EEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECcc
Confidence 7889999999988766666678899999999998742 3332211112221110 012456 899999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+........ +++.+++... ..+.++++||++|.|+.+
T Consensus 125 l~~~~~v~~----~ei~~~~~~~----~~~~~~evSAktg~gI~e 161 (247)
T cd04143 125 RDFPREVQR----DEVEQLVGGD----ENCAYFEVSAKKNSNLDE 161 (247)
T ss_pred chhccccCH----HHHHHHHHhc----CCCEEEEEeCCCCCCHHH
Confidence 974212222 2333333211 135789999999999976
No 213
>PLN03110 Rab GTPase; Provisional
Probab=99.53 E-value=2.4e-13 Score=140.16 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=97.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+++|+.++|||||+++|++.. ...+..+.+.++.....+..++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~-------------------------------~~~~~~~t~g~~~~~~~v~~~~~ 59 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNE-------------------------------FCLESKSTIGVEFATRTLQVEGK 59 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-------------------------------CCCCCCCceeEEEEEEEEEECCE
Confidence 45799999999999999999998421 0111123334444444444443
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccc
Q 004202 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~ 493 (768)
..+.||||||+++|.......+..+|++|+|+|.+... .|+. ....+..+.. .++| +++|.||+|+..
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~----~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~ 131 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFDN----VQRWLRELRDHADSNIV-IMMAGNKSDLNH 131 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChH---HHHH----HHHHHHHHHHhCCCCCe-EEEEEEChhccc
Confidence 57889999999999888788889999999999998642 2221 1122222222 3566 899999999864
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... ...+... .+.... .++++++||++|.|+.+
T Consensus 132 ~~~-~~~~~~~---~l~~~~-----~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 132 LRS-VAEEDGQ---ALAEKE-----GLSFLETSALEATNVEK 164 (216)
T ss_pred ccC-CCHHHHH---HHHHHc-----CCEEEEEeCCCCCCHHH
Confidence 211 1111112 222222 35899999999999976
No 214
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.53 E-value=4e-14 Score=135.94 Aligned_cols=131 Identities=21% Similarity=0.269 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
.+|+++|.+++|||||+++|.+... ....|..+.+. =
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-----------------------------------~~~KTq~i~~~--------~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-----------------------------------RYKKTQAIEYY--------D 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-----------------------------------CcCccceeEec--------c
Confidence 3799999999999999999984211 11223333221 1
Q ss_pred EEEeCCC----ccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 421 VVLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 421 ~lIDTPG----h~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
.+||||| +..|...++..+..||++++|.||+.+. ...--.++..+..| +|=||||+|+.. +.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~-----------~~~pP~fa~~f~~p-vIGVITK~Dl~~-~~ 105 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR-----------SVFPPGFASMFNKP-VIGVITKIDLPS-DD 105 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC-----------ccCCchhhcccCCC-EEEEEECccCcc-ch
Confidence 3599999 6678888899999999999999999752 11111234556666 899999999983 23
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.. +...++|+..|+. .+|++|+.+|+|+.+
T Consensus 106 ~~i----~~a~~~L~~aG~~----~if~vS~~~~eGi~e 136 (143)
T PF10662_consen 106 ANI----ERAKKWLKNAGVK----EIFEVSAVTGEGIEE 136 (143)
T ss_pred hhH----HHHHHHHHHcCCC----CeEEEECCCCcCHHH
Confidence 333 3444566667875 359999999999976
No 215
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.53 E-value=5.4e-14 Score=145.63 Aligned_cols=156 Identities=18% Similarity=0.130 Sum_probs=94.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|..++|||||+++|+... | .. ...|+...+.......+.+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~----------------------f---------~~---~~~Tig~~~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERR----------------------F---------KD---TVSTVGGAFYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC----------------------C---------CC---CCCccceEEEEEEeeEEEE
Confidence 479999999999999999998421 0 00 0112222222223356789
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch----
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK---- 496 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~---- 496 (768)
.||||||++.|.......+..+|++|+|+|++... .|+.+..+..... .....++| +|||.||+|+.+...
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~---Sf~~l~~~~~~l~-~~~~~~~p-iIlVgNK~DL~~~~~~~~~ 121 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ---SLEELEDRFLGLT-DTANEDCL-FAVVGNKLDLTEEGALAGQ 121 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHH-HhcCCCCc-EEEEEECcccccccccccc
Confidence 99999999999888888889999999999998742 2222111111111 11112455 899999999975100
Q ss_pred -----------hhHHHHHHHHhHHHhhcCCC---------CCCCcEEEeecccCCCccc
Q 004202 497 -----------DRFDSIKVQLGTFLRSCGFK---------DASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 -----------e~~~~i~~el~~~lk~~g~~---------~~~i~~IpVSA~tG~gI~e 535 (768)
....-..++...+.+..+.. ...++|+++||++|.||.+
T Consensus 122 ~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~e 180 (220)
T cd04126 122 EKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDE 180 (220)
T ss_pred cccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHH
Confidence 00011122333333333200 0125789999999999977
No 216
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.53 E-value=6.1e-14 Score=135.03 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=92.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--CeE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NYH 419 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~~ 419 (768)
||+++|++|+|||||+++|+... ..... ..++.+.....+... ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEY------------------------------DPTIEDSYRKTIVVDGETYT 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCc------------------------------CCChhHeEEEEEEECCEEEE
Confidence 58999999999999999998431 10000 001111122223333 467
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-H---cCCCeEEEEEecccccccc
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-S---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~-~---lgip~iIVVvNKmDlv~~s 495 (768)
+.+||+||+.++.......+..+|++|+|+|.+.... ++ .....+..+. . .++| +++|+||+|+....
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~----~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 120 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES---FE----EIKGYREQILRVKDDEDIP-IVLVGNKCDLENER 120 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH----HHHHHHHHHHHhcCCCCCc-EEEEEECCcccccc
Confidence 8899999999988888888889999999999987421 11 1222222222 2 2466 89999999987521
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
... .+++..+++..+ .+++++|+++|.|+.+
T Consensus 121 ~~~----~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 121 QVS----KEEGKALAKEWG-----CPFIETSAKDNINIDE 151 (160)
T ss_pred eec----HHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Confidence 111 233334444433 5789999999999976
No 217
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.53 E-value=6.7e-14 Score=137.29 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=90.4
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-CeEEEEE
Q 004202 345 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 423 (768)
Q Consensus 345 IvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-~~~i~lI 423 (768)
++|++|+|||||+++|++... .....+++|++.....+..+ +..+.||
T Consensus 1 iiG~~~~GKStll~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-------------------------------KVANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-------------------------------cccCCCceeecCcceEEEcCCCCeEEEE
Confidence 589999999999999995311 01112456666655556666 8899999
Q ss_pred eCCCccc-------hHHHHHHhcccCCEEEEEEecCCCcc---ccccccchhhhHHHHHHHH----------HcCCCeEE
Q 004202 424 DSPGHKD-------FVPNMISGATQSDAAILVIDASVGSF---EVGMNTAKGLTREHAQLIR----------SFGVDQLI 483 (768)
Q Consensus 424 DTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~---e~~~~~~~~qt~e~l~ll~----------~lgip~iI 483 (768)
||||+.+ +...+...+..+|++++|+|+..... ...+ .....+...+. ..+.| ++
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p-~i 124 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPL----EDYEILNAELKLYDLETILGLLTAKP-VI 124 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHH----HHHHHHHHHHHHhhhhhHHHHHhhCC-eE
Confidence 9999733 23345667788999999999987510 0001 11111111111 13566 89
Q ss_pred EEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 484 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 484 VVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+||+|+... ....... ...... ....+++++||++|.|+.+
T Consensus 125 vv~NK~Dl~~~--~~~~~~~--~~~~~~-----~~~~~~~~~Sa~~~~gl~~ 167 (176)
T cd01881 125 YVLNKIDLDDA--EELEEEL--VRELAL-----EEGAEVVPISAKTEEGLDE 167 (176)
T ss_pred EEEEchhcCch--hHHHHHH--HHHHhc-----CCCCCEEEEehhhhcCHHH
Confidence 99999999752 2211111 111111 1235789999999999965
No 218
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.53 E-value=8.5e-14 Score=138.07 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=92.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--Ce
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~ 418 (768)
.+|+++|++|+|||||+++|+... ... ...+ ++.......+... .+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~--~~~-----------------------------~~~~-t~~~~~~~~~~~~~~~~ 49 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH--FVE-----------------------------SYYP-TIENTFSKIIRYKGQDY 49 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--Ccc-----------------------------ccCc-chhhhEEEEEEECCEEE
Confidence 589999999999999999999421 000 0001 1111111222222 35
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||+.+|.......+..+|++|+|+|++... .++.........+......++| +|+|+||+|+.......
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~ 125 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRK---SFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVS 125 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccC
Confidence 6789999999998877778888999999999998742 1211111112222211123566 89999999987421111
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .++..+.+.++ .+++++||++|.|+.+
T Consensus 126 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 153 (180)
T cd04137 126 T----EEGKELAESWG-----AAFLESSARENENVEE 153 (180)
T ss_pred H----HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 1 12223333332 4789999999999976
No 219
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.53 E-value=9.7e-14 Score=138.23 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
++|+++|..|+|||||+.+|++. .. ..+..+.+..... ..+..++ .
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~--~f-----------------------------~~~~~pt~~~~~~-~~~~~~~~~~ 49 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTN--KF-----------------------------PSEYVPTVFDNYA-VTVMIGGEPY 49 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC--CC-----------------------------CCCCCCceeeeeE-EEEEECCEEE
Confidence 68999999999999999999842 11 0111121111111 1223334 6
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccch
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~ 496 (768)
.+.||||||+++|...+...+..+|++|||+|.+... .|+.+... .+..+.. -++| +|||.||+|+.+. .
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~---s~~~~~~~---w~~~i~~~~~~~p-iilvgnK~Dl~~~-~ 121 (175)
T cd01874 50 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SFENVKEK---WVPEITHHCPKTP-FLLVGTQIDLRDD-P 121 (175)
T ss_pred EEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHH---HHHHHHHH---HHHHHHHhCCCCC-EEEEEECHhhhhC-h
Confidence 7889999999999777767788999999999998742 23221111 1122221 2566 8999999998652 1
Q ss_pred hhHHHH---------HHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+..+.+ .++...+.+..+ ...++++||++|.|+.+
T Consensus 122 ~~~~~l~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SA~tg~~v~~ 165 (175)
T cd01874 122 STIEKLAKNKQKPITPETGEKLARDLK----AVKYVECSALTQKGLKN 165 (175)
T ss_pred hhHHHhhhccCCCcCHHHHHHHHHHhC----CcEEEEecCCCCCCHHH
Confidence 111111 111222222222 35789999999999976
No 220
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=9e-14 Score=137.51 Aligned_cols=152 Identities=17% Similarity=0.099 Sum_probs=92.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
++.++|+++|..|+|||||+++|++.. +. ..+..+.+..+.....+..++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~----------------------------~~~~~~T~~~~~~~~~~~~~~ 51 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FS----------------------------LNAYSPTIKPRYAVNTVEVYG 51 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CC----------------------------cccCCCccCcceEEEEEEECC
Confidence 356899999999999999999998421 00 011112111122222233333
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cCCCeEEEEEeccccccc
Q 004202 418 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVvNKmDlv~~ 494 (768)
..+.+||++|.+.|.......+..+|++|+|+|+++.. .|+ ...+.+..+.. .++| +++|+||+|+.+.
T Consensus 52 ~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~---s~~----~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~ 123 (169)
T cd01892 52 QEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPK---SFS----YCAEVYKKYFMLGEIP-CLFVAAKADLDEQ 123 (169)
T ss_pred eEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHH---HHH----HHHHHHHHhccCCCCe-EEEEEEccccccc
Confidence 56889999999988776667778999999999998641 111 11122222211 2566 8999999998642
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. .. ..+...+.+.+++. .++++||++|.|+.+
T Consensus 124 ~~-~~---~~~~~~~~~~~~~~----~~~~~Sa~~~~~v~~ 156 (169)
T cd01892 124 QQ-RY---EVQPDEFCRKLGLP----PPLHFSSKLGDSSNE 156 (169)
T ss_pred cc-cc---ccCHHHHHHHcCCC----CCEEEEeccCccHHH
Confidence 11 10 11222333334432 348999999999976
No 221
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.53 E-value=3e-13 Score=135.81 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=95.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
++|+++|..++|||||+.+|++. . | ..+..+.+..+.....+..++ .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~--~--------------------f---------~~~~~~T~g~~~~~~~i~~~~~~~ 49 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEG--E--------------------F---------DEDYIQTLGVNFMEKTISIRGTEI 49 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--C--------------------C---------CCCCCCccceEEEEEEEEECCEEE
Confidence 47999999999999999999842 0 0 111112222333223344444 5
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~~s 495 (768)
.+.||||+|+++|...+...+..+|++|+|+|+++.. +|+.+ .+.+..+... .+| |+|.||+|+....
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~---s~~~i----~~~~~~~~~~~~~~~p--ilVgnK~Dl~~~~ 120 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKS---TLNSI----KEWYRQARGFNKTAIP--ILVGTKYDLFADL 120 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHH---HHHHH----HHHHHHHHHhCCCCCE--EEEEEchhccccc
Confidence 6889999999999887777889999999999998742 22221 1222223221 233 6789999996311
Q ss_pred -hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 -KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 -~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+..+.+.++...+.+..+ .+++++||++|.|+.+
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~-----~~~~e~SAk~g~~v~~ 156 (182)
T cd04128 121 PPEEQEEITKQARKYAKAMK-----APLIFCSTSHSINVQK 156 (182)
T ss_pred cchhhhhhHHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1111122334444444433 4789999999999976
No 222
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.52 E-value=1.6e-13 Score=138.68 Aligned_cols=156 Identities=13% Similarity=0.143 Sum_probs=94.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEE-EEEEeeCC
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSKN 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~-~~~~~~~~ 417 (768)
..++|+++|..++|||||+.+++.. .. .++..+.+..... ...+....
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~--~f-----------------------------~~~~~~t~~~~~~~~~~~~~~~ 50 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTN--AF-----------------------------PKEYIPTVFDNYSAQTAVDGRT 50 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhC--CC-----------------------------CcCCCCceEeeeEEEEEECCEE
Confidence 3589999999999999999999842 11 0111111111111 01122234
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
..+.||||||+++|.......+..+|++|+|+|.+... +|+.+.....+.+.. ..-++| +|||.||.|+.+...
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~---Sf~~~~~~w~~~i~~-~~~~~p-iilvgNK~DL~~~~~- 124 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS---SYENVRHKWHPEVCH-HCPNVP-ILLVGTKKDLRNDAD- 124 (191)
T ss_pred EEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHh-hCCCCC-EEEEEeChhhhcChh-
Confidence 66889999999999887777889999999999998742 233221111111111 113566 899999999964211
Q ss_pred hHHHH---------HHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..+.+ .++...+.+..+ .++++++||++|+|+.+
T Consensus 125 ~~~~~~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SAk~g~~v~e 167 (191)
T cd01875 125 TLKKLKEQGQAPITPQQGGALAKQIH----AVKYLECSALNQDGVKE 167 (191)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEeCCCCCCCHHH
Confidence 11111 112223333332 25789999999999976
No 223
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.52 E-value=1.1e-13 Score=131.06 Aligned_cols=146 Identities=21% Similarity=0.231 Sum_probs=94.4
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-CeEEEEE
Q 004202 345 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 423 (768)
Q Consensus 345 IvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-~~~i~lI 423 (768)
++|++|+|||||+++|++..... ....++.|.......+... ...+.||
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------------------------------VSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc------------------------------cCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 58999999999999998431110 1122445555554444443 7789999
Q ss_pred eCCCccchH-------HHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 424 DSPGHKDFV-------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 424 DTPGh~~f~-------~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
||||+.++. ..+...+..+|++++|+|+.... .......+......++| +++|+||+|++..
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~--------~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~-- 119 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRA--------DEEEEKLLELLRERGKP-VLLVLNKIDLLPE-- 119 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHhcCCe-EEEEEEccccCCh--
Confidence 999977654 34445678899999999999863 11222234455556777 8999999999863
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
......... .... .......+++++||.++.|+.+
T Consensus 120 ~~~~~~~~~-~~~~---~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 120 EEEEELLEL-RLLI---LLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred hhHHHHHHH-HHhh---cccccCCceEEEeeeccCCHHH
Confidence 222211110 0111 1112457899999999999965
No 224
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.52 E-value=1.4e-13 Score=156.18 Aligned_cols=142 Identities=25% Similarity=0.231 Sum_probs=98.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+++|++|+|||||+|+|++....+. ...+|+|.+.....+..++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv------------------------------s~~pgtTrd~~~~~i~~~g 250 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIV------------------------------SDIKGTTRDVVEGDFELNG 250 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCccc------------------------------CCCCCcEEEEEEEEEEECC
Confidence 3458999999999999999999995322111 1237889998888888899
Q ss_pred eEEEEEeCCCccchHH--------HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004202 418 YHVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~--------~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
..+.||||||+.++.. .....+..+|++|+|+|++.+.. .... .+..+...++| +|+|+||+
T Consensus 251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s--------~~~~-~l~~~~~~~~p-iIlV~NK~ 320 (442)
T TIGR00450 251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT--------KDDF-LIIDLNKSKKP-FILVLNKI 320 (442)
T ss_pred EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC--------hhHH-HHHHHhhCCCC-EEEEEECc
Confidence 9999999999865432 23456788999999999987521 1111 23333345777 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+... .. . .+.+.++ .+++++||++ .|+.+
T Consensus 321 Dl~~~---~~----~---~~~~~~~-----~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 321 DLKIN---SL----E---FFVSSKV-----LNSSNLSAKQ-LKIKA 350 (442)
T ss_pred cCCCc---ch----h---hhhhhcC-----CceEEEEEec-CCHHH
Confidence 99642 11 1 1112222 4678999998 47754
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.3e-13 Score=158.54 Aligned_cols=144 Identities=22% Similarity=0.331 Sum_probs=102.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
..+||++|++|+|||||+|+|++..-.+ |.| +|+|++-....+...++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~V-----------------gNw--------------pGvTVEkkeg~~~~~~~~ 51 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKV-----------------GNW--------------PGVTVEKKEGKLKYKGHE 51 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCcee-----------------cCC--------------CCeeEEEEEEEEEecCce
Confidence 4569999999999999999999642222 333 899999999999999999
Q ss_pred EEEEeCCCccchH----HH--HHHhc--ccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004202 420 VVVLDSPGHKDFV----PN--MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 420 i~lIDTPGh~~f~----~~--~i~g~--~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
+.|+|+||--.+. .+ ....+ ..+|++|.||||++- . .......++..+|+| +|+++|++|.
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL---------e-RnLyltlQLlE~g~p-~ilaLNm~D~ 120 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL---------E-RNLYLTLQLLELGIP-MILALNMIDE 120 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH---------H-HHHHHHHHHHHcCCC-eEEEeccHhh
Confidence 9999999933221 11 11122 358999999999862 2 223333456678999 9999999998
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. +.. +.-+..++-+.+| +|++|+||++|.|+++
T Consensus 121 A~--~~G---i~ID~~~L~~~LG-----vPVv~tvA~~g~G~~~ 154 (653)
T COG0370 121 AK--KRG---IRIDIEKLSKLLG-----VPVVPTVAKRGEGLEE 154 (653)
T ss_pred HH--hcC---CcccHHHHHHHhC-----CCEEEEEeecCCCHHH
Confidence 64 111 2222233333345 6899999999999876
No 226
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.51 E-value=2.6e-13 Score=132.87 Aligned_cols=150 Identities=18% Similarity=0.195 Sum_probs=94.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
++|+++|..++|||||+.+++.. .+ ..+..+.+..+.....+...+ .
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~--~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDN--EF-----------------------------HSSHISTIGVDFKMKTIEVDGIKV 49 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcC--CC-----------------------------CCCCCCceeeEEEEEEEEECCEEE
Confidence 37999999999999999999831 10 111123333333333444444 5
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||||..+|...+......+|++++|+|.+.. .+|+.+..+. +.+.....-++| +++|.||+|+..... .
T Consensus 50 ~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~sf~~~~~~~-~~~~~~~~~~~~-iilvgnK~Dl~~~~~-v 123 (161)
T cd04117 50 RIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSE---RSYQHIMKWV-SDVDEYAPEGVQ-KILIGNKADEEQKRQ-V 123 (161)
T ss_pred EEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCH---HHHHHHHHHH-HHHHHhCCCCCe-EEEEEECcccccccC-C
Confidence 678999999999888777888899999999999864 2233221111 111111112455 899999999864211 1
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ++...+.+.++ .+++++||++|.|+.+
T Consensus 124 ~~---~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 124 GD---EQGNKLAKEYG-----MDFFETSACTNSNIKE 152 (161)
T ss_pred CH---HHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 11 12222223333 4789999999999976
No 227
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.51 E-value=2.4e-13 Score=140.63 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=95.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-- 415 (768)
...++|+++|..|+|||||+++++... ...+..+.+..+.....+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~-------------------------------f~~~~~~tig~~~~~~~~~~~~ 59 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-------------------------------FEKKYEPTIGVEVHPLDFFTNC 59 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC-------------------------------CCCccCCccceeEEEEEEEECC
Confidence 566899999999999999999987321 01111122222222222322
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
....+.||||||+++|...+...+..+|++|+|+|.+... +|..+..+..+.... .-++| +++|.||+|+...
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~---s~~~i~~w~~~i~~~--~~~~p-iilvgNK~Dl~~~- 132 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLCRV--CENIP-IVLCGNKVDVKNR- 132 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHH---HHHHHHHHHHHHHHh--CCCCc-EEEEEEchhhhhc-
Confidence 3468899999999999877777788999999999999752 222221111111111 23566 8999999998642
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.... +++ .+.+. ..++++++||++|.|+.+
T Consensus 133 ~v~~----~~~-~~~~~-----~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 133 QVKA----KQV-TFHRK-----KNLQYYEISAKSNYNFEK 162 (219)
T ss_pred cCCH----HHH-HHHHh-----cCCEEEEcCCCCCCCHHH
Confidence 1111 112 22222 235789999999999976
No 228
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.51 E-value=6.8e-14 Score=122.35 Aligned_cols=80 Identities=29% Similarity=0.460 Sum_probs=74.4
Q ss_pred ceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccCCc
Q 004202 569 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGG 647 (768)
Q Consensus 569 lr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~ 647 (768)
|||||.++|+.. .|+. ++|+|++|.|++||+|+++|.+..++|++|++++.+++.|.|||+|+|.|++ ..++++|+
T Consensus 1 lr~~V~dv~k~~~~~~~-v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~--~~~i~~G~ 77 (81)
T cd03695 1 FRFPVQYVIRPNADFRG-YAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLED--EIDVSRGD 77 (81)
T ss_pred CEeeEEEEEeeCCCcEE-EEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEECC--ccccCCCC
Confidence 689999999987 6667 8999999999999999999999999999999999999999999999999984 67899999
Q ss_pred cccc
Q 004202 648 VLCH 651 (768)
Q Consensus 648 VL~~ 651 (768)
|||.
T Consensus 78 vl~~ 81 (81)
T cd03695 78 VIVA 81 (81)
T ss_pred EEeC
Confidence 9973
No 229
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.50 E-value=3.9e-13 Score=129.67 Aligned_cols=147 Identities=18% Similarity=0.263 Sum_probs=95.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEEE
Q 004202 343 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 422 (768)
Q Consensus 343 VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~l 422 (768)
|+++|+.|+|||||++.|++.... ...+...+.|.......+ .. .+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~--~~-~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-----------------------------ARTSKTPGKTQLINFFNV--ND-KFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-----------------------------eeecCCCCcceeEEEEEc--cC-eEEE
Confidence 899999999999999999931110 011122344554433332 22 8999
Q ss_pred EeCCCccch----------HH---HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004202 423 LDSPGHKDF----------VP---NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 423 IDTPGh~~f----------~~---~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
+||||+... .. ..+......+++++|+|+.... .....+.+.++...+.| +++|+||+
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~l~~~~~~-vi~v~nK~ 120 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP--------TEIDLEMLDWLEELGIP-FLVVLTKA 120 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC--------CHhHHHHHHHHHHcCCC-EEEEEEch
Confidence 999996432 22 2233334578899999998652 23445566777778887 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+.. .+........+...++... ...+++++||+++.|+.+
T Consensus 121 D~~~--~~~~~~~~~~~~~~l~~~~---~~~~~~~~Sa~~~~~~~~ 161 (170)
T cd01876 121 DKLK--KSELAKALKEIKKELKLFE---IDPPIILFSSLKGQGIDE 161 (170)
T ss_pred hcCC--hHHHHHHHHHHHHHHHhcc---CCCceEEEecCCCCCHHH
Confidence 9974 3334444455555554211 235789999999999866
No 230
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.50 E-value=2.1e-13 Score=142.90 Aligned_cols=120 Identities=23% Similarity=0.353 Sum_probs=87.5
Q ss_pred CCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe
Q 004202 335 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 414 (768)
Q Consensus 335 ~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~ 414 (768)
.+..+.++||++|.+|+|||||.|.|++......++ +..+|.......+.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~------------------------------K~~TTr~~ilgi~t 116 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR------------------------------KVHTTRHRILGIIT 116 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccc------------------------------cccceeeeeeEEEe
Confidence 455678999999999999999999999754444333 35578888888888
Q ss_pred eCCeEEEEEeCCC------ccc------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cCCCe
Q 004202 415 SKNYHVVVLDSPG------HKD------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQ 481 (768)
Q Consensus 415 ~~~~~i~lIDTPG------h~~------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~ 481 (768)
.+..+++|+|||| |.+ ++.+...++..||.+++|+||+..- ....-..+..+.. ..+|
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr--------~~l~p~vl~~l~~ys~ip- 187 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATR--------TPLHPRVLHMLEEYSKIP- 187 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCc--------CccChHHHHHHHHHhcCC-
Confidence 8999999999999 222 2334466778899999999998521 1122223333333 3577
Q ss_pred EEEEEecccccc
Q 004202 482 LIVAVNKMDAVQ 493 (768)
Q Consensus 482 iIVVvNKmDlv~ 493 (768)
-|+|+||+|.+.
T Consensus 188 s~lvmnkid~~k 199 (379)
T KOG1423|consen 188 SILVMNKIDKLK 199 (379)
T ss_pred ceeeccchhcch
Confidence 689999999875
No 231
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.50 E-value=1.6e-13 Score=136.52 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=92.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE--EEEeeCCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--AYFDSKNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~--~~~~~~~~ 418 (768)
++|+++|..|+|||||+.+++.. ... .+..+.+ .+.-. ..+.....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~--~f~-----------------------------~~~~~t~-~~~~~~~~~~~~~~~ 49 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTN--AFP-----------------------------GEYIPTV-FDNYSANVMVDGKPV 49 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CcCCCcc-eeeeEEEEEECCEEE
Confidence 68999999999999999999841 110 0001111 11101 11222346
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccch
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~ 496 (768)
.+.||||||+++|...+...+..+|++|+|+|.+... +|+.+. ...+..+.. -++| +|||.||+|+.+. .
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---sf~~~~---~~~~~~~~~~~~~~p-iilvgnK~Dl~~~-~ 121 (174)
T cd01871 50 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA---SFENVR---AKWYPEVRHHCPNTP-IILVGTKLDLRDD-K 121 (174)
T ss_pred EEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH---HHHHHH---HHHHHHHHHhCCCCC-EEEEeeChhhccC-h
Confidence 7889999999999877777888999999999998742 222211 112222222 2466 8999999999642 1
Q ss_pred hhHHHH---------HHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+.+ .++...+.+..+ ..+|+++||++|+|+.+
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~i~~ 165 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIG----AVKYLECSALTQKGLKT 165 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEecccccCCHHH
Confidence 111111 122223333333 24789999999999976
No 232
>PLN03108 Rab family protein; Provisional
Probab=99.50 E-value=5.3e-13 Score=136.94 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=94.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--C
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~ 417 (768)
.++|+|+|..|+|||||+++|+...- .....+.+..+.....+..+ .
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~-------------------------------~~~~~~ti~~~~~~~~i~~~~~~ 54 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRF-------------------------------QPVHDLTIGVEFGARMITIDNKP 54 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-------------------------------CCCCCCCccceEEEEEEEECCEE
Confidence 47999999999999999999984210 00011222222222223333 3
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEeccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~ 494 (768)
..+.||||||++.|...+...+..+|++|+|+|++... .|. ...+.+..+.. ..+| +++|.||+|+...
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~---s~~----~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~ 126 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN----HLASWLEDARQHANANMT-IMLIGNKCDLAHR 126 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHH---HHH----HHHHHHHHHHHhcCCCCc-EEEEEECccCccc
Confidence 46789999999999888888888999999999998642 121 11111221221 2455 8999999998642
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..-. .++..++++..+ ++++++||++|.|+.+
T Consensus 127 ~~~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 127 RAVS----TEEGEQFAKEHG-----LIFMEASAKTAQNVEE 158 (210)
T ss_pred cCCC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHH
Confidence 1111 122333444433 4789999999999976
No 233
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.50 E-value=1.1e-12 Score=136.34 Aligned_cols=167 Identities=20% Similarity=0.211 Sum_probs=113.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
..++..|+++|++|+|||||++.|+...... ......|. +. .+...
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------------------------~~~~~~g~-i~----i~~~~ 81 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------------------------NISDIKGP-IT----VVTGK 81 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------------------------cccccccc-EE----EEecC
Confidence 3456789999999999999999998531110 00011231 11 12236
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
+.+++++||||+. ..++..+..+|++++|+|+..+. ..++.+.+..+...|+|.+|+|+||+|+++. .
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~--------~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~-~ 149 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGF--------EMETFEFLNILQVHGFPRVMGVLTHLDLFKK-N 149 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCC--------CHHHHHHHHHHHHcCCCeEEEEEeccccCCc-H
Confidence 7889999999964 66677788999999999998763 4577788888888899866679999999852 4
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhhccCCC
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAIDSLRPP 561 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~~l~~~ 561 (768)
+.++.+.+++...+...-+ ...+++++||++.-.+. |-++..|+..|..+.+.
T Consensus 150 ~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~~~~~----------~~e~~~~~r~i~~~~~~ 202 (225)
T cd01882 150 KTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVHGRYP----------KTEIHNLARFISVMKFR 202 (225)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccCCCCC----------HHHHHHHHHHHHhCCCC
Confidence 4466666777664332112 23588999999885542 22234466666655443
No 234
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=4.2e-13 Score=131.98 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=114.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
.+...+|+++|..++||||++.+|......+..... ... .....+.+|+..-+..+...
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~----------~~~-----------s~k~kr~tTva~D~g~~~~~ 65 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADA----------SSV-----------SGKGKRPTTVAMDFGSIELD 65 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccc----------ccc-----------ccccccceeEeecccceEEc
Confidence 345689999999999999999999965432221100 000 00013457777777777765
Q ss_pred C-eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC-CCeEEEEEeccccccc
Q 004202 417 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQY 494 (768)
Q Consensus 417 ~-~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg-ip~iIVVvNKmDlv~~ 494 (768)
+ ..+.|+|||||++|-..+.-.+++++.+|++||++.+. ....++.+.++.... +| ++|++||.|+.+.
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~--------~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a 136 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPI--------TFHAEEIIDFLTSRNPIP-VVVAINKQDLFDA 136 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCc--------chHHHHHHHHHhhccCCC-EEEEeeccccCCC
Confidence 5 89999999999999999988899999999999999863 123356667777777 66 8999999999863
Q ss_pred -chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 -SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 -s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.+ +++++++... ..+++|+++|.++++..+
T Consensus 137 ~ppe-------~i~e~l~~~~---~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 137 LPPE-------KIREALKLEL---LSVPVIEIDATEGEGARD 168 (187)
T ss_pred CCHH-------HHHHHHHhcc---CCCceeeeecccchhHHH
Confidence 333 3333443321 357899999999999865
No 235
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.49 E-value=4.6e-13 Score=134.26 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=92.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--CCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~~~ 418 (768)
++|+++|..++|||||+++|+... | ..+..+.++.+.....+.. ...
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~----------------------~---------~~~~~~t~~~~~~~~~~~~~~~~~ 49 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDE----------------------F---------SESTKSTIGVDFKIKTVYIENKII 49 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC----------------------C---------CCCCCCceeeEEEEEEEEECCEEE
Confidence 479999999999999999998321 0 0001122222222223333 345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~s 495 (768)
.+.||||||+.+|...+...+..+|++|+|+|++... .|.. ....+..+.. ..+| +|||.||+|+.+..
T Consensus 50 ~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~~----i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~ 121 (188)
T cd04125 50 KLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQE---SFEN----LKFWINEINRYARENVI-KVIVANKSDLVNNK 121 (188)
T ss_pred EEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHH---HHHH----HHHHHHHHHHhCCCCCe-EEEEEECCCCcccc
Confidence 6789999999998888888889999999999998742 2221 1122222222 2345 89999999987421
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.-. . .....+....+ ++++++||++|.|+.+
T Consensus 122 ~v~-~---~~~~~~~~~~~-----~~~~evSa~~~~~i~~ 152 (188)
T cd04125 122 VVD-S---NIAKSFCDSLN-----IPFFETSAKQSINVEE 152 (188)
T ss_pred cCC-H---HHHHHHHHHcC-----CeEEEEeCCCCCCHHH
Confidence 111 1 11122222223 4789999999999976
No 236
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.49 E-value=1.6e-13 Score=134.25 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=86.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCe-EEEEEEEEEeeCCeEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI-TMTVAVAYFDSKNYHV 420 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~Gi-Tid~~~~~~~~~~~~i 420 (768)
+|+++|..|+|||||+.+|+... .... ..+.+ +.......+......+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~ 49 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGE-----------------------------YDPNLESLYSRQVTIDGEQVSL 49 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccc-----------------------------cCCChHHhceEEEEECCEEEEE
Confidence 58999999999999999998421 0000 00000 0111111222233468
Q ss_pred EEEeCCCccch-HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH--HcCCCeEEEEEecccccccchh
Q 004202 421 VVLDSPGHKDF-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 421 ~lIDTPGh~~f-~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~--~lgip~iIVVvNKmDlv~~s~e 497 (768)
.||||||+..+ ...+...+..+|++|+|+|++... +|+.+. .....+.... ..++| +|+|.||+|+.....
T Consensus 50 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~-~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~- 123 (165)
T cd04146 50 EILDTAGQQQADTEQLERSIRWADGFVLVYSITDRS---SFDEIS-QLKQLIREIKKRDREIP-VILVGNKADLLHYRQ- 123 (165)
T ss_pred EEEECCCCcccccchHHHHHHhCCEEEEEEECCCHH---HHHHHH-HHHHHHHHHhcCCCCCC-EEEEEECCchHHhCc-
Confidence 89999999853 445566788899999999998752 222111 1111112111 23566 899999999864211
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCC-Cccc
Q 004202 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~-gI~e 535 (768)
.. .++...+.+..+ .+++++||++|. |+.+
T Consensus 124 -v~--~~~~~~~~~~~~-----~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 124 -VS--TEEGEKLASELG-----CLFFEVSAAEDYDGVHS 154 (165)
T ss_pred -cC--HHHHHHHHHHcC-----CEEEEeCCCCCchhHHH
Confidence 10 112223333333 478999999994 8866
No 237
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.49 E-value=9.6e-14 Score=138.51 Aligned_cols=151 Identities=23% Similarity=0.255 Sum_probs=102.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
.+..+|+++|..|||||||+++|... .+. ...-|.......+...+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~--~~~--------------------------------~~~pT~g~~~~~i~~~~ 57 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNG--EIS--------------------------------ETIPTIGFNIEEIKYKG 57 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSS--SEE--------------------------------EEEEESSEEEEEEEETT
T ss_pred CcEEEEEEECCCccchHHHHHHhhhc--ccc--------------------------------ccCcccccccceeeeCc
Confidence 45689999999999999999999831 100 01124444455666789
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEecccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv~ 493 (768)
..+.|+|.+|+..+...+...+..+|++|+|||+++.. . ....++.+..+.. .++| ++|++||+|+.+
T Consensus 58 ~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~---~----l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~ 129 (175)
T PF00025_consen 58 YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPE---R----LQEAKEELKELLNDPELKDIP-ILILANKQDLPD 129 (175)
T ss_dssp EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGG---G----HHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTT
T ss_pred EEEEEEeccccccccccceeeccccceeEEEEecccce---e----ecccccchhhhcchhhcccce-EEEEeccccccC
Confidence 99999999999988888888888999999999998642 1 1233333322221 2455 899999999876
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ...+++...+. +..+. ....+.++++||.+|+|+.+
T Consensus 130 ~--~~~~~i~~~l~--l~~l~-~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 130 A--MSEEEIKEYLG--LEKLK-NKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp S--STHHHHHHHTT--GGGTT-SSSCEEEEEEBTTTTBTHHH
T ss_pred c--chhhHHHhhhh--hhhcc-cCCceEEEeeeccCCcCHHH
Confidence 3 12233333222 11121 23567889999999999976
No 238
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.48 E-value=6e-13 Score=130.96 Aligned_cols=149 Identities=14% Similarity=0.162 Sum_probs=90.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--CeEE
Q 004202 343 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NYHV 420 (768)
Q Consensus 343 VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~~i 420 (768)
|+|+|..|+|||||+++|++.. +. .+..+.+. +.-...+..+ ...+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~-----------------------------~~~~~~~~-~~~~~~~~~~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FP-----------------------------EDYVPTVF-ENYSADVEVDGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CC-----------------------------CCCCCcEE-eeeeEEEEECCEEEEE
Confidence 5899999999999999998421 10 00001111 1111122223 3468
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccchhh
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.||||||+++|.......+..+|++|+|+|++... .|+.+ ....+..+.. .++| +|+|.||+|+... ...
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~---~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~-~~~ 120 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA---SFENV---KEKWYPEVKHFCPNTP-IILVGTKLDLRED-KST 120 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHH---HHHHH---HHHHHHHHHhhCCCCC-EEEEecChhhhhC-hhh
Confidence 89999999998777777788999999999998641 22211 1111222222 2566 8999999998752 111
Q ss_pred HHHH---------HHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+.+ .++...+.+..++ .+++++||++|.|+.+
T Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 162 (174)
T smart00174 121 LRELSKQKQEPVTYEQGEALAKRIGA----VKYLECSALTQEGVRE 162 (174)
T ss_pred hhhhhcccCCCccHHHHHHHHHHcCC----cEEEEecCCCCCCHHH
Confidence 1111 1223344444442 3789999999999976
No 239
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.47 E-value=4.7e-13 Score=132.34 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=92.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--Ce
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~ 418 (768)
++|+++|..|+|||||+.++++. ... .+. ..++.+.-...+..+ ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~--~~~-----------------------------~~~-~~t~~~~~~~~~~~~~~~~ 48 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTN--GYP-----------------------------TEY-VPTAFDNFSVVVLVDGKPV 48 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CCC-----------------------------CCC-CCceeeeeeEEEEECCEEE
Confidence 47999999999999999999742 100 000 111222211222223 35
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccch
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~ 496 (768)
.+.||||||+.+|.......+..+|++|+|+|+++.. +|+. .....+..+.. .++| +++|.||+|+.....
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~---sf~~---~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 121 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPS---SFQN---ISEKWIPEIRKHNPKAP-IILVGTQADLRTDVN 121 (173)
T ss_pred EEEEEECCCChhhccccccccCCCcEEEEEEECCCHH---HHHH---HHHHHHHHHHhhCCCCC-EEEEeeChhhccChh
Confidence 7889999999998777767788999999999998742 1211 11112222222 2566 899999999864211
Q ss_pred h--------hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 D--------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e--------~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. ...-..++...+.+..+. .+++++||++|.|+.+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~ 164 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKIGA----CEYIECSALTQKNLKE 164 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHhCC----CeEEEEeCCCCCCHHH
Confidence 0 000011223333333332 3789999999999976
No 240
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.47 E-value=3.8e-13 Score=135.45 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=91.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEE-EEEEEeeCCeE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV-AVAYFDSKNYH 419 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~-~~~~~~~~~~~ 419 (768)
.+|+++|..|+|||||+++|++.. | ..+..+.+.... ....+......
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~----------------------~---------~~~~~~t~~~~~~~~i~~~~~~~~ 49 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY----------------------F---------PQVYEPTVFENYVHDIFVDGLHIE 49 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC----------------------C---------CCccCCcceeeeEEEEEECCEEEE
Confidence 379999999999999999998421 0 000011111111 11112223357
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccchh
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~e 497 (768)
+.||||||+++|.......+..+|++|+|+|.+... +|+.+. ...+..+.. .++| +|+|.||+|+......
T Consensus 50 l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~---sf~~~~---~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~ 122 (189)
T cd04134 50 LSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPD---SLENVE---SKWLGEIREHCPGVK-LVLVALKCDLREARNE 122 (189)
T ss_pred EEEEECCCChhccccccccccCCCEEEEEEECCCHH---HHHHHH---HHHHHHHHHhCCCCC-EEEEEEChhhccChhh
Confidence 899999999998766666778899999999998742 222111 111222222 2566 8999999999753211
Q ss_pred hH--HH------HHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RF--DS------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~--~~------i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.- .. ..++...+.+..+ .++++++||++|.|+.+
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~v~e 164 (189)
T cd04134 123 RDDLQRYGKHTISYEEGLAVAKRIN----ALRYLECSAKLNRGVNE 164 (189)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC----CCEEEEccCCcCCCHHH
Confidence 10 00 0112223333322 25789999999999976
No 241
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.47 E-value=2.4e-13 Score=135.99 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=94.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEE-EEEEeeCCeE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSKNYH 419 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~-~~~~~~~~~~ 419 (768)
++|+++|..++|||+|+.+++.. . | ..+..+.+..... ...+......
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~--~--------------------f---------~~~~~~Ti~~~~~~~~~~~~~~v~ 50 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN--K--------------------F---------PTDYIPTVFDNFSANVSVDGNTVN 50 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcC--C--------------------C---------CCCCCCcceeeeEEEEEECCEEEE
Confidence 68999999999999999999832 1 1 1111111111111 1112223467
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccchh
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~e 497 (768)
+.||||+|+++|...+...++.+|++|||+|.++. .+|+.+. ...+..++. -++| +|||.||+|+.+....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~---~Sf~~~~---~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~ 123 (176)
T cd04133 51 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISR---ASYENVL---KKWVPELRHYAPNVP-IVLVGTKLDLRDDKQY 123 (176)
T ss_pred EEEEECCCCccccccchhhcCCCcEEEEEEEcCCH---HHHHHHH---HHHHHHHHHhCCCCC-EEEEEeChhhccChhh
Confidence 88999999999988887888999999999999874 2333221 111222222 2566 8999999999642110
Q ss_pred ------hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 ------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ------~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...-..++...+.+..+. .+++.+||++|.||.+
T Consensus 124 ~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~nV~~ 163 (176)
T cd04133 124 LADHPGASPITTAQGEELRKQIGA----AAYIECSSKTQQNVKA 163 (176)
T ss_pred hhhccCCCCCCHHHHHHHHHHcCC----CEEEECCCCcccCHHH
Confidence 000112333444444332 2589999999999976
No 242
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.47 E-value=4e-13 Score=132.31 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=90.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEE-EEEEEEeeCCeE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDSKNYH 419 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid-~~~~~~~~~~~~ 419 (768)
.+|+++|+.++|||||+.+|++..- .....+.+... .....+......
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~ 50 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-------------------------------PEVYVPTVFENYVADIEVDGKQVE 50 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCccccceEEEEEECCEEEE
Confidence 5899999999999999999984210 00000111111 111122223356
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccchh
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~e 497 (768)
+.||||||+++|.......+..+|++++|+|++... +|+.+... .+..+.. .++| +++|+||+|+.... .
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~---s~~~~~~~---~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~ 122 (175)
T cd01870 51 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLENIPEK---WTPEVKHFCPNVP-IILVGNKKDLRNDE-H 122 (175)
T ss_pred EEEEeCCCchhhhhccccccCCCCEEEEEEECCCHH---HHHHHHHH---HHHHHHhhCCCCC-EEEEeeChhcccCh-h
Confidence 889999999988776666778999999999998631 12111111 1111222 2566 89999999986421 1
Q ss_pred hHHHH---------HHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i---------~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..+.+ ..+...+.+..+ ..+++++||++|.|+.+
T Consensus 123 ~~~~i~~~~~~~v~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 165 (175)
T cd01870 123 TRRELAKMKQEPVKPEEGRDMANKIG----AFGYMECSAKTKEGVRE 165 (175)
T ss_pred hhhhhhhccCCCccHHHHHHHHHHcC----CcEEEEeccccCcCHHH
Confidence 11111 112222333332 24789999999999976
No 243
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.47 E-value=4e-13 Score=157.62 Aligned_cols=137 Identities=20% Similarity=0.218 Sum_probs=95.4
Q ss_pred eCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEEEEeCC
Q 004202 347 GHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDSP 426 (768)
Q Consensus 347 G~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~lIDTP 426 (768)
|.+|+|||||+|+|++... .....+|+|++.....+..++..+.++|||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-------------------------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-------------------------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-------------------------------eecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 8899999999999985311 111237899998888888888899999999
Q ss_pred CccchHHH-----H-HH--hcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 427 GHKDFVPN-----M-IS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 427 Gh~~f~~~-----~-i~--g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
|+.++... + .. ....+|++++|+|++.. . ...+....+...++| +++|+||+|+.+. ..
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------e-r~l~l~~ql~~~~~P-iIIVlNK~Dl~~~--~~ 116 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------E-RNLYLTLQLLELGIP-MILALNLVDEAEK--KG 116 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------h-hhHHHHHHHHhcCCC-EEEEEehhHHHHh--CC
Confidence 98876432 1 11 23469999999999863 1 222333344567888 8999999998642 11
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. .+...+.+.++ ++++++||++|+|+.+
T Consensus 117 i~---~d~~~L~~~lg-----~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 117 IR---IDEEKLEERLG-----VPVVPTSATEGRGIER 145 (591)
T ss_pred Ch---hhHHHHHHHcC-----CCEEEEECCCCCCHHH
Confidence 11 12223333333 5789999999999976
No 244
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.46 E-value=7.7e-13 Score=133.02 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=95.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEE-EEEEeeCC
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSKN 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~-~~~~~~~~ 417 (768)
..++|+++|..++|||||+.+++.. . | ..+..+.+..... ...+....
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~--~--------------------f---------~~~~~pT~~~~~~~~~~~~~~~ 52 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKD--C--------------------F---------PENYVPTVFENYTASFEIDTQR 52 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC--C--------------------C---------CCccCCceeeeeEEEEEECCEE
Confidence 4579999999999999999999842 1 0 0111111111111 11122234
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchh
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e 497 (768)
..+.||||+|.++|.......+..+|++|||+|.+.. .+|+.+.....+.+... .-.+| +|+|.||+|+.+....
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~---~Sf~~~~~~w~~~i~~~-~~~~p-iilVgNK~DL~~~~~~ 127 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP---ETLDSVLKKWKGEIQEF-CPNTK-MLLVGCKSDLRTDLTT 127 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHH-CCCCC-EEEEeEChhhhcChhh
Confidence 5788999999999988777788999999999999874 23332111111111111 12455 8999999998641100
Q ss_pred -------h-HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCC-ccc
Q 004202 498 -------R-FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 535 (768)
Q Consensus 498 -------~-~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~g-I~e 535 (768)
+ ..-..++..++.+..++ .+|+.+||++|.| |.+
T Consensus 128 ~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~n~v~~ 170 (182)
T cd04172 128 LVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRD 170 (182)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCC----CEEEECCcCCCCCCHHH
Confidence 0 00112334455555442 3789999999998 876
No 245
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.44 E-value=7.6e-13 Score=137.02 Aligned_cols=148 Identities=17% Similarity=0.122 Sum_probs=86.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|..|+|||||+++|+.. .... . ..+...+.........+......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~--~~~~------------------------~--~~~~t~~~~~~~~~i~~~~~~~~l 52 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSG--EYDD------------------------H--AYDASGDDDTYERTVSVDGEESTL 52 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC--CcCc------------------------c--CcCCCccccceEEEEEECCEEEEE
Confidence 47999999999999999999732 1000 0 000001101111112223345678
Q ss_pred EEEeCCCccchHHHHHHhcc-cCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCCeEEEEEecccccccc
Q 004202 421 VVLDSPGHKDFVPNMISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~-~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip~iIVVvNKmDlv~~s 495 (768)
.||||||++.+.... .+. .+|++|+|+|+++.. .|. ...+.+..+.. .++| +|+|.||+|+....
T Consensus 53 ~i~Dt~G~~~~~~~~--~~~~~ad~iilV~d~td~~---S~~----~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~ 122 (221)
T cd04148 53 VVIDHWEQEMWTEDS--CMQYQGDAFVVVYSVTDRS---SFE----RASELRIQLRRNRQLEDRP-IILVGNKSDLARSR 122 (221)
T ss_pred EEEeCCCcchHHHhH--HhhcCCCEEEEEEECCCHH---HHH----HHHHHHHHHHHhcCCCCCC-EEEEEEChhccccc
Confidence 999999998543332 334 899999999998742 222 12222222322 3566 89999999987521
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.-. .++...+....+ .+++++||++|.|+.+
T Consensus 123 ~v~----~~~~~~~a~~~~-----~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 123 EVS----VQEGRACAVVFD-----CKFIETSAGLQHNVDE 153 (221)
T ss_pred eec----HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Confidence 111 111122222222 4689999999999976
No 246
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=9.5e-13 Score=130.59 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=110.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+++|..|+|||.|+-|+.. +.+.+.....+.+|...+.++..+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~-------------------------------~~f~e~~~sTIGVDf~~rt~e~~gk 56 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKD-------------------------------DTFTESYISTIGVDFKIRTVELDGK 56 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhcc-------------------------------CCcchhhcceeeeEEEEEEeeecce
Confidence 458999999999999999999972 334455556667777777777655
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
..+.||||+|+++|...+.++.+.|+++|+|.|.+. +.+|+.+..+..|. ..-...+++ .++|.||+|+.+...
T Consensus 57 ~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~---~~SF~~v~~Wi~Ei-~~~~~~~v~-~lLVGNK~Dl~~~~~ 131 (205)
T KOG0084|consen 57 TIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK---QESFNNVKRWIQEI-DRYASENVP-KLLVGNKCDLTEKRV 131 (205)
T ss_pred EEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc---HHHhhhHHHHHHHh-hhhccCCCC-eEEEeeccccHhhee
Confidence 468899999999999999999999999999999997 45677654444443 222334567 689999999975211
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCc-EEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLT-WIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~-~IpVSA~tG~gI~e 535 (768)
-.. ++...+...++ ++ |+++||+.+.|+.+
T Consensus 132 v~~----~~a~~fa~~~~-----~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 132 VST----EEAQEFADELG-----IPIFLETSAKDSTNVED 162 (205)
T ss_pred cCH----HHHHHHHHhcC-----CcceeecccCCccCHHH
Confidence 111 12233433334 34 89999999999976
No 247
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.44 E-value=1.5e-12 Score=136.00 Aligned_cols=82 Identities=27% Similarity=0.321 Sum_probs=61.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|.+|+|||||+++|++....+ ...+++|.+.....+..++..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v-------------------------------~~~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV-------------------------------AAYEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc-------------------------------cCCCCccccceEEEEEECCeEEE
Confidence 68999999999999999999531110 01144566655566667889999
Q ss_pred EEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCC
Q 004202 422 VLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 454 (768)
Q Consensus 422 lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g 454 (768)
+|||||+.+ +...++..+..+|++++|+|++..
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 999999753 334567788899999999999764
No 248
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=7.7e-13 Score=132.42 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=92.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--CCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~~~ 418 (768)
.+|+++|..++|||||+.++++.. | ..+..+.+..... ..+.. ...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~----------------------f---------~~~~~~t~~~~~~-~~~~~~~~~~ 49 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC----------------------Y---------PETYVPTVFENYT-ASFEIDEQRI 49 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc----------------------C---------CCCcCCceEEEEE-EEEEECCEEE
Confidence 589999999999999999998421 0 1111111111111 12222 345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccch
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~ 496 (768)
.+.||||||+++|.......++.+|++|+|+|.+.. .+|+.+. ...+..+.. -.+| +|+|.||+|+.+...
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~---~Sf~~~~---~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~ 122 (178)
T cd04131 50 ELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRP---ETLDSVL---KKWRGEIQEFCPNTK-VLLVGCKTDLRTDLS 122 (178)
T ss_pred EEEEEECCCchhhhhcchhhcCCCCEEEEEEECCCh---hhHHHHH---HHHHHHHHHHCCCCC-EEEEEEChhhhcChh
Confidence 688999999999877777778899999999999874 2232211 111122222 2455 899999999864110
Q ss_pred h-------hH-HHHHHHHhHHHhhcCCCCCCCcEEEeecccCCC-ccc
Q 004202 497 D-------RF-DSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 535 (768)
Q Consensus 497 e-------~~-~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~g-I~e 535 (768)
. +. .-..++..++.+..++ .+++.+||++|+| |.+
T Consensus 123 ~~~~~~~~~~~~v~~~e~~~~a~~~~~----~~~~E~SA~~~~~~v~~ 166 (178)
T cd04131 123 TLMELSHQRQAPVSYEQGCAIAKQLGA----EIYLECSAFTSEKSVRD 166 (178)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCC----CEEEECccCcCCcCHHH
Confidence 0 00 0012233444444442 3689999999995 866
No 249
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.3e-12 Score=129.13 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=101.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
.+..+|+++|..++|||+|+.++.++. +...-+..|.+|.-...+...
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~-------------------------------fd~~YqATIGiDFlskt~~l~d 68 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDK-------------------------------FDNTYQATIGIDFLSKTMYLED 68 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhh-------------------------------hcccccceeeeEEEEEEEEEcC
Confidence 445899999999999999999999631 111122445555544444444
Q ss_pred -CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHH-HHHcCC--CeEEEEEeccccc
Q 004202 417 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IRSFGV--DQLIVAVNKMDAV 492 (768)
Q Consensus 417 -~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~l-l~~lgi--p~iIVVvNKmDlv 492 (768)
..++.||||+|+++|....-++++.+.++|+|.|.++- .+|. ++..-+.- .+..|- ..+++|.||.||+
T Consensus 69 ~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~---~Sfe----~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR---NSFE----NTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred cEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc---chHH----HHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 46788999999999999999999999999999998863 1222 33322222 233333 2467788999999
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+ +..+... +-....+.++ ..|+.+||+.|.||.+
T Consensus 142 d--krqvs~e--Eg~~kAkel~-----a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 142 D--KRQVSIE--EGERKAKELN-----AEFIETSAKAGENVKQ 175 (221)
T ss_pred c--hhhhhHH--HHHHHHHHhC-----cEEEEecccCCCCHHH
Confidence 6 3222211 1113333333 5789999999999965
No 250
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.44 E-value=8.2e-13 Score=116.74 Aligned_cols=85 Identities=33% Similarity=0.453 Sum_probs=76.1
Q ss_pred eeeEEEEEEEeeCCCCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEe-CceEEeec
Q 004202 658 IATHLELKVLVLDFAPPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVAL-QEPVCVEE 736 (768)
Q Consensus 658 ~~~~F~a~i~vl~~~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l-~~pI~~e~ 736 (768)
.++.|+|++.||+++.||.+||++.+|+++..++|+|.++.. ++|++|+.+.|+|+| .+|+|+++
T Consensus 2 ~~~~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~e~ 67 (87)
T cd03708 2 ACWEFEAEILVLHHPTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYLRE 67 (87)
T ss_pred ceeEEEEEEEEEcCCCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEEcc
Confidence 467999999999999999999999999999999999987743 579999999999994 89998776
Q ss_pred ccccCCcceEEEEeCCcEEEEEEEEee
Q 004202 737 FSNCRALGRAFLRSSGRTIAVGIVTRI 763 (768)
Q Consensus 737 ~~~~~~lGRfILR~~g~TvgvG~V~~v 763 (768)
+|||+|| +|+|+|+|+|+++
T Consensus 68 ------~grf~lr-~g~tva~G~I~~~ 87 (87)
T cd03708 68 ------GQRLIFR-EGRTKGVGEVTKV 87 (87)
T ss_pred ------CCeEEEE-CCCcEEEEEEEEC
Confidence 6899997 5599999999875
No 251
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.43 E-value=1.3e-12 Score=136.26 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=94.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEE-EEEEeeCC
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDSKN 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~-~~~~~~~~ 417 (768)
..++|+++|..++|||+|+.+|+.. .. ..+..+.+..+.. ...+....
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~--~F-----------------------------~~~y~pTi~~~~~~~i~~~~~~ 60 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKD--CY-----------------------------PETYVPTVFENYTAGLETEEQR 60 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcC--CC-----------------------------CCCcCCceeeeeEEEEEECCEE
Confidence 4579999999999999999999842 11 0111111111111 11122234
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s 495 (768)
..+.||||+|.++|.......+..||++|||+|.+... .|+.+ ....+..+.. -++| +|+|.||+|+....
T Consensus 61 v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~---Sf~~~---~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~ 133 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE---TVDSA---LKKWKAEIMDYCPSTR-ILLIGCKTDLRTDL 133 (232)
T ss_pred EEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChH---HHHHH---HHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 67889999999999887777889999999999998742 22211 0111112221 2555 89999999985311
Q ss_pred hh--------hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCC-Cccc
Q 004202 496 KD--------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVT 535 (768)
Q Consensus 496 ~e--------~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~-gI~e 535 (768)
.. ...-..++..++.+..++ ..|+.+||++|+ |+.+
T Consensus 134 ~~~~~l~~~~~~~Vs~~e~~~~a~~~~~----~~~~EtSAktg~~~V~e 178 (232)
T cd04174 134 STLMELSNQKQAPISYEQGCALAKQLGA----EVYLECSAFTSEKSIHS 178 (232)
T ss_pred chhhhhccccCCcCCHHHHHHHHHHcCC----CEEEEccCCcCCcCHHH
Confidence 00 000112344555555553 258999999998 7876
No 252
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.42 E-value=1.4e-12 Score=121.64 Aligned_cols=142 Identities=20% Similarity=0.152 Sum_probs=90.8
Q ss_pred EEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeE-EEEEEEEEee--CCeEEE
Q 004202 345 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT-MTVAVAYFDS--KNYHVV 421 (768)
Q Consensus 345 IvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiT-id~~~~~~~~--~~~~i~ 421 (768)
++|++|+|||||+++|++.... ..+ ...| .+.....+.. .+..+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~------------------------------~~~--~~~t~~~~~~~~~~~~~~~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV------------------------------PEE--YETTIIDFYSKTIEVDGKKVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC------------------------------Ccc--cccchhheeeEEEEECCEEEEEE
Confidence 5899999999999999953221 000 1111 2222222222 357899
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHH-----HHHHHHHcCCCeEEEEEecccccccch
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE-----HAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e-----~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
+||+||+..+...+...+..+|++|+|+|++.+.. ..... .+......++| ++||+||+|+.....
T Consensus 49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~ 119 (157)
T cd00882 49 IWDTAGQERFRSLRRLYYRGADGIILVYDVTDRES--------FENVKEWLLLILINKEGENIP-IILVGNKIDLPEERV 119 (157)
T ss_pred EEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHH--------HHHHHHHHHHHHHhhccCCCc-EEEEEeccccccccc
Confidence 99999999988888888899999999999997531 11111 22233345666 899999999976322
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..... ....... ...++++++|+.++.|+.+
T Consensus 120 ~~~~~----~~~~~~~----~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 120 VSEEE----LAEQLAK----ELGVPYFETSAKTGENVEE 150 (157)
T ss_pred hHHHH----HHHHHHh----hcCCcEEEEecCCCCChHH
Confidence 21111 0111111 1346889999999999865
No 253
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.42 E-value=6.4e-13 Score=140.08 Aligned_cols=155 Identities=17% Similarity=0.235 Sum_probs=95.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
....|++||.+|||||||+++|+.....|... .-+|+.........+++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~Y-------------------------------aFTTL~P~iG~v~yddf 243 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHY-------------------------------AFTTLRPHIGTVNYDDF 243 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCccccc-------------------------------ceeeeccccceeecccc
Confidence 45679999999999999999999765544322 12455544444444443
Q ss_pred -EEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 419 -HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 -~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
++++.|.||..+ +-...++.+..++.+++|||.+.+....-++.+.-...|.=.+-..+.-++.+||+||||
T Consensus 244 ~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD 323 (366)
T KOG1489|consen 244 SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKID 323 (366)
T ss_pred ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccC
Confidence 499999999443 344567778889999999999876211111110001111111112233344789999999
Q ss_pred ccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 491 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+.+. ++ ...+++...+ . +..+||+||++++|+.+
T Consensus 324 ~~ea-e~---~~l~~L~~~l---q----~~~V~pvsA~~~egl~~ 357 (366)
T KOG1489|consen 324 LPEA-EK---NLLSSLAKRL---Q----NPHVVPVSAKSGEGLEE 357 (366)
T ss_pred chhH-HH---HHHHHHHHHc---C----CCcEEEeeeccccchHH
Confidence 9642 11 1223333333 1 23589999999999965
No 254
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.42 E-value=1.3e-12 Score=121.02 Aligned_cols=107 Identities=25% Similarity=0.305 Sum_probs=76.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
+|+++|.+|+|||||+|+|++.... .....++.|.......+...+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA------------------------------KVSNIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS------------------------------EESSSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhccccc------------------------------cccccccceeeeeeeeeeeceeeEE
Confidence 5899999999999999999942111 1112255666665666777899999
Q ss_pred EEeCCCccc---------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec
Q 004202 422 VLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 488 (768)
Q Consensus 422 lIDTPGh~~---------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK 488 (768)
|+||||..+ ........+..+|++++|||+... ......+.+..++ .+.| +++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~--------~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNP--------ITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSH--------SHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 999999532 344566777889999999998763 1234455555564 5555 8999998
No 255
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.41 E-value=2.2e-12 Score=115.61 Aligned_cols=86 Identities=26% Similarity=0.279 Sum_probs=77.3
Q ss_pred eeEEEEEEEeeCC-----CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEE
Q 004202 659 ATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVC 733 (768)
Q Consensus 659 ~~~F~a~i~vl~~-----~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~ 733 (768)
+..|+|++.||++ +.||..||++.+|+++.++.|+|..+ | .+++|++|+.+.|+|+|.+|++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~----~---------~~~~l~~g~~~~v~i~l~~p~~ 69 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP----P---------GKEMVMPGEDTKVTLILRRPMV 69 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC----C---------CCcEeCCCCEEEEEEEECCcEE
Confidence 5789999999986 58999999999999999999999865 2 2568999999999999999999
Q ss_pred eecccccCCcceEEEEeCCcEEEEEEEEee
Q 004202 734 VEEFSNCRALGRAFLRSSGRTIAVGIVTRI 763 (768)
Q Consensus 734 ~e~~~~~~~lGRfILR~~g~TvgvG~V~~v 763 (768)
+++ +|||+||+.++|||+|+|+++
T Consensus 70 ~~~------g~rf~lR~~~~tvg~G~V~~~ 93 (93)
T cd03706 70 LEK------GQRFTLRDGNRTIGTGLVTDT 93 (93)
T ss_pred Eee------CCEEEEEECCEEEEEEEEEeC
Confidence 887 479999999999999999874
No 256
>PRK09866 hypothetical protein; Provisional
Probab=99.40 E-value=1.5e-12 Score=149.30 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=75.9
Q ss_pred CeEEEEEeCCCccc-----hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC--CCeEEEEEecc
Q 004202 417 NYHVVVLDSPGHKD-----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKM 489 (768)
Q Consensus 417 ~~~i~lIDTPGh~~-----f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg--ip~iIVVvNKm 489 (768)
..+++|+||||... +.+.|...+..+|++|+|||+..+. ....++.+..+...+ .| +|+|+||+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~--------s~~DeeIlk~Lkk~~K~~P-VILVVNKI 299 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLK--------SISDEEVREAILAVGQSVP-LYVLVNKF 299 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCC--------ChhHHHHHHHHHhcCCCCC-EEEEEEcc
Confidence 46899999999432 4556777889999999999998752 234556667777777 36 89999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|+.+...+..+.+...+...+....+ ....++||||++|.|+..
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG~nid~ 343 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCI--TPQQIFPVSSMWGYLANR 343 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCC--CCceEEEEeCCCCCCHHH
Confidence 98742222234455555444433333 234689999999999966
No 257
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=2.5e-12 Score=129.27 Aligned_cols=152 Identities=20% Similarity=0.180 Sum_probs=106.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
..++|+++|..++|||.|+-++... .|... -...+-++.....+..++
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~----------------------~f~~~---------~~sTiGIDFk~kti~l~g~ 59 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDD----------------------SFNTS---------FISTIGIDFKIKTIELDGK 59 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhc----------------------cCcCC---------ccceEEEEEEEEEEEeCCe
Confidence 4689999999999999999999832 11100 112344555555565555
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
..+.||||+|+++|...+-++++.|+.++||+|.+. +.+|+.+.. ..+.+..-..-+++ +++|-||+|+...
T Consensus 60 ~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn---e~Sfeni~~-W~~~I~e~a~~~v~-~~LvGNK~D~~~~-- 132 (207)
T KOG0078|consen 60 KIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN---EKSFENIRN-WIKNIDEHASDDVV-KILVGNKCDLEEK-- 132 (207)
T ss_pred EEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc---hHHHHHHHH-HHHHHHhhCCCCCc-EEEeecccccccc--
Confidence 456799999999999999999999999999999987 345554433 33333333334777 7899999998751
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
| .--.++-.++...+| +.|+.+||++|.||.+
T Consensus 133 -R-~V~~e~ge~lA~e~G-----~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 133 -R-QVSKERGEALAREYG-----IKFFETSAKTNFNIEE 164 (207)
T ss_pred -c-cccHHHHHHHHHHhC-----CeEEEccccCCCCHHH
Confidence 1 111233344444555 5889999999999987
No 258
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.40 E-value=1.1e-12 Score=128.63 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=107.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...++|+|+|..|+|||+|++++.+.. +. + .-...|..+.....+..++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~k-------F~---~---------------------qykaTIgadFltKev~Vd~ 55 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKK-------FS---Q---------------------QYKATIGADFLTKEVQVDD 55 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHH-------HH---H---------------------HhccccchhheeeEEEEcC
Confidence 456999999999999999999999521 00 0 0011222232333333333
Q ss_pred --eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEeccccc
Q 004202 418 --YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 --~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv 492 (768)
..+.||||+|+++|...-....++||.++||.|.+.. .+|+.+..+-.|.+..+... ..| +||+.||+|+-
T Consensus 56 ~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~---~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~~ 131 (210)
T KOG0394|consen 56 RSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP---KSFENLENWRKEFLIQASPQDPETFP-FVILGNKIDVD 131 (210)
T ss_pred eEEEEEEEecccHHHhhhcccceecCCceEEEEeecCCh---hhhccHHHHHHHHHHhcCCCCCCccc-EEEEcccccCC
Confidence 4567999999999998888889999999999999874 45666666666666655532 345 89999999986
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+- +.+. .-.......++.- .++|++.+||+.+.|+.+
T Consensus 132 ~~-~~r~-VS~~~Aq~WC~s~----gnipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 132 GG-KSRQ-VSEKKAQTWCKSK----GNIPYFETSAKEATNVDE 168 (210)
T ss_pred CC-ccce-eeHHHHHHHHHhc----CCceeEEecccccccHHH
Confidence 42 1121 1123334445443 378999999999999976
No 259
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.39 E-value=2.6e-12 Score=131.18 Aligned_cols=142 Identities=21% Similarity=0.255 Sum_probs=89.5
Q ss_pred EeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--eCCeEEEEE
Q 004202 346 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNYHVVVL 423 (768)
Q Consensus 346 vG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~--~~~~~i~lI 423 (768)
+|..++|||||+.++++. .. ..+..+.+..+.....+. .....+.||
T Consensus 1 vG~~~vGKTsLi~r~~~~--~f-----------------------------~~~~~~Tig~~~~~~~~~~~~~~~~l~iw 49 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--EF-----------------------------EKKYVATLGVEVHPLVFHTNRGPIRFNVW 49 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--CC-----------------------------CCCCCCceeEEEEEEEEEECCEEEEEEEE
Confidence 699999999999999831 11 111112222233223333 345688999
Q ss_pred eCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHH
Q 004202 424 DSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 503 (768)
Q Consensus 424 DTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~ 503 (768)
||||+++|...+...++.+|++|+|+|++... +|+.+..+..+.... .-++| +|+|.||+|+... ....+
T Consensus 50 Dt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~---S~~~i~~w~~~i~~~--~~~~p-iilvgNK~Dl~~~-~v~~~--- 119 (200)
T smart00176 50 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTARV---TYKNVPNWHRDLVRV--CENIP-IVLCGNKVDVKDR-KVKAK--- 119 (200)
T ss_pred ECCCchhhhhhhHHHhcCCCEEEEEEECCChH---HHHHHHHHHHHHHHh--CCCCC-EEEEEECcccccc-cCCHH---
Confidence 99999999888888899999999999999752 222221111111111 13567 8999999998641 11111
Q ss_pred HHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 504 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 504 ~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+ .+.+.. .+.++++||++|.||.+
T Consensus 120 -~~-~~~~~~-----~~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 120 -SI-TFHRKK-----NLQYYDISAKSNYNFEK 144 (200)
T ss_pred -HH-HHHHHc-----CCEEEEEeCCCCCCHHH
Confidence 11 222222 36789999999999976
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=9.5e-13 Score=145.65 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=105.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+..+.|+|+|.+|+|||||+|+|+.....|.+ ..+|+|.|.....|+.+|
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS------------------------------pv~GTTRDaiea~v~~~G 315 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVS------------------------------PVPGTTRDAIEAQVTVNG 315 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC------------------------------CCCCcchhhheeEeecCC
Confidence 45699999999999999999999976555543 349999999999999999
Q ss_pred eEEEEEeCCCccc---------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC-----C----
Q 004202 418 YHVVVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-----V---- 479 (768)
Q Consensus 418 ~~i~lIDTPGh~~---------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg-----i---- 479 (768)
+.+.|+||+|..+ -+......+..||++++||||....++. .......+...+ +
T Consensus 316 ~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~s--------d~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 316 VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTES--------DLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccccc--------chHHHHHHHHhccceEEEeccc
Confidence 9999999999766 1233355677899999999998765442 222333333322 1
Q ss_pred --CeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcE-EEeecccCCCccc
Q 004202 480 --DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTW-IPLSALENQNLVT 535 (768)
Q Consensus 480 --p~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~-IpVSA~tG~gI~e 535 (768)
.++|+++||.|+...-.+. ......++...+. ...++ ..+|+++++|+..
T Consensus 388 ~~~~~i~~~nk~D~~s~~~~~----~~~~~~~~~~~~~--~~~~i~~~vs~~tkeg~~~ 440 (531)
T KOG1191|consen 388 EKQRIILVANKSDLVSKIPEM----TKIPVVYPSAEGR--SVFPIVVEVSCTTKEGCER 440 (531)
T ss_pred cccceEEEechhhccCccccc----cCCceeccccccC--cccceEEEeeechhhhHHH
Confidence 4578899999987521111 1111111111111 12333 4499999999966
No 261
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.38 E-value=2.6e-12 Score=125.97 Aligned_cols=147 Identities=19% Similarity=0.133 Sum_probs=84.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
++|+++|..|+|||||+.+++.. .... +..+ +...-...+..++ .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~--~f~~-----------------------------~~~~--~~~~~~~~i~~~~~~~ 47 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTG--SYVQ-----------------------------LESP--EGGRFKKEVLVDGQSH 47 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhC--CCCC-----------------------------CCCC--CccceEEEEEECCEEE
Confidence 47999999999999999998832 1100 0000 0000011223334 5
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||+|.++. .....+|++|+|+|.++. ..|+.+..+..+........++| +++|.||+|+...++..
T Consensus 48 ~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~---~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~~~ 118 (158)
T cd04103 48 LLLIRDEGGAPDA-----QFASWVDAVIFVFSLENE---ASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNPRV 118 (158)
T ss_pred EEEEEECCCCCch-----hHHhcCCEEEEEEECCCH---HHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCCcc
Confidence 6889999999753 234679999999999874 33433211111111111112456 89999999985321111
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. .++..++.+.. ..+.|+++||++|.||.+
T Consensus 119 v~--~~~~~~~~~~~----~~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 119 ID--DARARQLCADM----KRCSYYETCATYGLNVER 149 (158)
T ss_pred cC--HHHHHHHHHHh----CCCcEEEEecCCCCCHHH
Confidence 11 11222333222 235789999999999976
No 262
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.37 E-value=8.8e-12 Score=121.04 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=95.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--CCeE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNYH 419 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~~~~ 419 (768)
||+++|..++|||||+++|.+.. . ..+..+.+..+.....+.. ....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~~ 49 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE--F-----------------------------PENYIPTIGIDSYSKEVSIDGKPVN 49 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--T-----------------------------TSSSETTSSEEEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhc--c-----------------------------ccccccccccccccccccccccccc
Confidence 69999999999999999998421 0 0011111112333333333 4456
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhH
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 499 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~ 499 (768)
+.|||++|+++|.......+..+|++|+|.|.++. .+|+.+. .....+.......+| ++||.||.|+.+..+-.
T Consensus 50 l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~---~S~~~~~-~~~~~i~~~~~~~~~-iivvg~K~D~~~~~~v~- 123 (162)
T PF00071_consen 50 LEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDE---ESFENLK-KWLEEIQKYKPEDIP-IIVVGNKSDLSDEREVS- 123 (162)
T ss_dssp EEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBH---HHHHTHH-HHHHHHHHHSTTTSE-EEEEEETTTGGGGSSSC-
T ss_pred ccccccccccccccccccccccccccccccccccc---ccccccc-ccccccccccccccc-ceeeeccccccccccch-
Confidence 88999999999987777778899999999999873 3444322 122221111111344 89999999987521111
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 500 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 500 ~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.++...+.+..+ .+++.+||+++.|+.+
T Consensus 124 ---~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 124 ---VEEAQEFAKELG-----VPYFEVSAKNGENVKE 151 (162)
T ss_dssp ---HHHHHHHHHHTT-----SEEEEEBTTTTTTHHH
T ss_pred ---hhHHHHHHHHhC-----CEEEEEECCCCCCHHH
Confidence 123344444443 5889999999999976
No 263
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.37 E-value=8e-12 Score=129.67 Aligned_cols=151 Identities=13% Similarity=0.149 Sum_probs=92.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--CCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~--~~~ 418 (768)
.+|++||..++|||+|+.+|+... . .++..+.+..+.. ..+.. ...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--f-----------------------------~~~y~pTi~~~~~-~~~~~~~~~v 49 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--Y-----------------------------PGSYVPTVFENYT-ASFEIDKRRI 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--C-----------------------------CCccCCccccceE-EEEEECCEEE
Confidence 589999999999999999998421 0 1111111111111 12222 345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccch
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~ 496 (768)
.+.||||+|++.|.......+..+|++|+|+|.+... .|+.+.... ...+.. -++| +|+|.||+|+.+. .
T Consensus 50 ~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~---Sf~~i~~~w---~~~~~~~~~~~p-iiLVgnK~DL~~~-~ 121 (222)
T cd04173 50 ELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPE---TLDSVLKKW---QGETQEFCPNAK-VVLVGCKLDMRTD-L 121 (222)
T ss_pred EEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHH---HHHHHHHHH---HHHHHhhCCCCC-EEEEEECcccccc-h
Confidence 6889999999999888878889999999999998742 222211111 111121 3566 8999999998642 1
Q ss_pred hhHHH--------H-HHHHhHHHhhcCCCCCCCcEEEeecccCCC-ccc
Q 004202 497 DRFDS--------I-KVQLGTFLRSCGFKDASLTWIPLSALENQN-LVT 535 (768)
Q Consensus 497 e~~~~--------i-~~el~~~lk~~g~~~~~i~~IpVSA~tG~g-I~e 535 (768)
..... + .++...+.+..+ .++++.+||++++| |.+
T Consensus 122 ~~~~~~~~~~~~pIs~e~g~~~ak~~~----~~~y~E~SAk~~~~~V~~ 166 (222)
T cd04173 122 ATLRELSKQRLIPVTHEQGTVLAKQVG----AVSYVECSSRSSERSVRD 166 (222)
T ss_pred hhhhhhhhccCCccCHHHHHHHHHHcC----CCEEEEcCCCcCCcCHHH
Confidence 11111 1 122333333433 24789999999985 866
No 264
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.36 E-value=5.9e-12 Score=112.08 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=75.1
Q ss_pred eeEEEEEEEeeCC-----CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEE
Q 004202 659 ATHLELKVLVLDF-----APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVC 733 (768)
Q Consensus 659 ~~~F~a~i~vl~~-----~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~ 733 (768)
+..|+|++.+|++ +.||+.||++.+|+|+..+.|+|..+. ++++|++|+.+.|+|.|++|++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~ 69 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA 69 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence 5789999999986 589999999999999999999998663 3578999999999999999999
Q ss_pred eecccccCCcceEEEEeCCcEEEEEEE
Q 004202 734 VEEFSNCRALGRAFLRSSGRTIAVGIV 760 (768)
Q Consensus 734 ~e~~~~~~~lGRfILR~~g~TvgvG~V 760 (768)
+++ +|||+||+.++|||+|+|
T Consensus 70 ~~~------~~rf~lR~~~~tig~G~V 90 (90)
T cd03707 70 LEK------GLRFAIREGGRTVGAGVI 90 (90)
T ss_pred Eec------CCEEEEecCCcEEEEEEC
Confidence 887 479999999999999986
No 265
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.36 E-value=1e-11 Score=127.08 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=74.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--eCCe
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~--~~~~ 418 (768)
++|+++|+.|+|||||+++|...... .. ...++.......+. ..+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~---------------------------~t-----~~s~~~~~~~~~~~~~~~~~ 48 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYR---------------------------ST-----VTSIEPNVATFILNSEGKGK 48 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCC---------------------------Cc-----cCcEeecceEEEeecCCCCc
Confidence 36999999999999999999842100 00 01111112222221 2467
Q ss_pred EEEEEeCCCccchHHHHHHhcccC-CEEEEEEecCCCccccccccchhhhHHHHH----HHHH--cCCCeEEEEEecccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQS-DAAILVIDASVGSFEVGMNTAKGLTREHAQ----LIRS--FGVDQLIVAVNKMDA 491 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~a-D~aILVVDA~~g~~e~~~~~~~~qt~e~l~----ll~~--lgip~iIVVvNKmDl 491 (768)
.+.|||||||.+|...+...+..+ +++|+|||+.... ..+ ..+.+.+. .... -++| ++||+||+|+
T Consensus 49 ~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~--~~~----~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl 121 (203)
T cd04105 49 KFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ--KNL----KDVAEFLYDILTDLEKVKNKIP-VLIACNKQDL 121 (203)
T ss_pred eEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch--hHH----HHHHHHHHHHHHHHhhccCCCC-EEEEecchhh
Confidence 899999999999988888888888 9999999998741 111 12222221 1111 2677 8999999998
Q ss_pred cc
Q 004202 492 VQ 493 (768)
Q Consensus 492 v~ 493 (768)
..
T Consensus 122 ~~ 123 (203)
T cd04105 122 FT 123 (203)
T ss_pred cc
Confidence 75
No 266
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.2e-12 Score=124.71 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=104.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.++++++|..++|||.|+-+++... +.......+.++.+.+.+..++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~kr-------------------------------F~~~hd~TiGvefg~r~~~id~k~ 54 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKR-------------------------------FQPVHDLTIGVEFGARMVTIDGKQ 54 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccC-------------------------------ccccccceeeeeeceeEEEEcCce
Confidence 4789999999999999999998320 0111113345566666666554
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEeccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~~ 494 (768)
.++.||||+||+.|...+.++.+.|-.+|||.|.+.. ..|+.+ ..+|.-+++. ++. ++++.||+||...
T Consensus 55 IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r---~sF~hL----~~wL~D~rq~~~~Nmv-ImLiGNKsDL~~r 126 (216)
T KOG0098|consen 55 IKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRR---ESFNHL----TSWLEDARQHSNENMV-IMLIGNKSDLEAR 126 (216)
T ss_pred EEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccch---hhHHHH----HHHHHHHHHhcCCCcE-EEEEcchhhhhcc
Confidence 4678999999999999999999999999999999874 344433 2223333333 333 6788899999742
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+ +--.++-..+.++.| +.|+.+||++++|+.+
T Consensus 127 ---R-~Vs~EEGeaFA~ehg-----LifmETSakt~~~VEE 158 (216)
T KOG0098|consen 127 ---R-EVSKEEGEAFAREHG-----LIFMETSAKTAENVEE 158 (216)
T ss_pred ---c-cccHHHHHHHHHHcC-----ceeehhhhhhhhhHHH
Confidence 1 223455666676666 4678999999999977
No 267
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1e-11 Score=132.18 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=102.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
.+...+.|+|+|++|+|||||++.|+....-+.+. +-+|-.+...+|+.
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~Y-------------------------------PFTTK~i~vGhfe~ 212 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPY-------------------------------PFTTKGIHVGHFER 212 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCC-------------------------------CccccceeEeeeec
Confidence 33456899999999999999999999654433222 44677788888998
Q ss_pred CCeEEEEEeCCCccc--------hHHHHHHhcc-cCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEE
Q 004202 416 KNYHVVVLDSPGHKD--------FVPNMISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 486 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~--------f~~~~i~g~~-~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVv 486 (768)
+..++.+|||||.-| --.+.+.+++ .++++|+++|++.. +++. +..|..-.-.+-..+..| +++|+
T Consensus 213 ~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~---cgy~-lE~Q~~L~~eIk~~f~~p-~v~V~ 287 (346)
T COG1084 213 GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET---CGYS-LEEQISLLEEIKELFKAP-IVVVI 287 (346)
T ss_pred CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc---cCCC-HHHHHHHHHHHHHhcCCC-eEEEE
Confidence 999999999999433 1222344443 48899999999863 3343 234443333333345655 99999
Q ss_pred ecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 487 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
||+|..+ .+.++++...+... |. ..+..+++..+.+++.
T Consensus 288 nK~D~~~--~e~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 288 NKIDIAD--EEKLEEIEASVLEE----GG----EEPLKISATKGCGLDK 326 (346)
T ss_pred ecccccc--hhHHHHHHHHHHhh----cc----ccccceeeeehhhHHH
Confidence 9999985 56655555443332 22 2345678888877754
No 268
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.33 E-value=6.5e-12 Score=126.17 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=88.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--Ce
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--NY 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~~ 418 (768)
.+|+++|..|+|||||+++|+.. ... .+..+.+... -...+... ..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~--~~~-----------------------------~~~~~t~~~~-~~~~~~~~~~~~ 49 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLG--EFP-----------------------------EEYHPTVFEN-YVTDCRVDGKPV 49 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCC-----------------------------cccCCcccce-EEEEEEECCEEE
Confidence 48999999999999999999831 100 0000111111 11112222 34
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccccch
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~~s~ 496 (768)
.+.+|||||+++|.......+..+|++|+|+|.+... .|+.+.. ..+..+.. -.+| +|+|.||+|+.....
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~---s~~~~~~---~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~ 122 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD---SLENVRT---KWIEEVRRYCPNVP-VILVGLKKDLRQDAV 122 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHH---HHHHHHH---HHHHHHHHhCCCCC-EEEEeeChhhhhCcc
Confidence 5789999998887654444568899999999997642 2222111 11222222 2466 899999999864211
Q ss_pred -------hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 -------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 -------e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.++.. ..+...+.+..+. .+++++||++|.|+.+
T Consensus 123 ~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 163 (187)
T cd04129 123 AKEEYRTQRFVP-IQQGKRVAKEIGA----KKYMECSALTGEGVDD 163 (187)
T ss_pred cccccccCCcCC-HHHHHHHHHHhCC----cEEEEccCCCCCCHHH
Confidence 11110 1222333344442 3689999999999976
No 269
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.32 E-value=1.9e-11 Score=124.26 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=90.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-CCe
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNY 418 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-~~~ 418 (768)
+++|+++|.+|+|||||+|+|++.... . .+.. . .. ...+|.... .+.. ...
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~-~---------------~~~~---~-~~------~~~~t~~~~--~~~~~~~~ 52 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHE-E---------------EGAA---P-TG------VVETTMKRT--PYPHPKFP 52 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCC-C---------------CCcc---c-cC------ccccccCce--eeecCCCC
Confidence 368999999999999999999952110 0 0000 0 00 001122111 1111 234
Q ss_pred EEEEEeCCCcc-------chHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004202 419 HVVVLDSPGHK-------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 419 ~i~lIDTPGh~-------~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
.+.+|||||.. +|+.. ..+..+|++|+|.+..- .......+..+...+.+ +++|+||+|+
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~--~~~~~~d~~l~v~~~~~----------~~~d~~~~~~l~~~~~~-~ilV~nK~D~ 119 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEE--MKFSEYDFFIIISSTRF----------SSNDVKLAKAIQCMGKK-FYFVRTKVDR 119 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHH--hCccCcCEEEEEeCCCC----------CHHHHHHHHHHHHhCCC-EEEEEecccc
Confidence 78999999964 33332 23567899888865431 23445566677777877 8999999998
Q ss_pred cccch-----------hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecc--cCCCc
Q 004202 492 VQYSK-----------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL--ENQNL 533 (768)
Q Consensus 492 v~~s~-----------e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~--tG~gI 533 (768)
....+ ..++++.+.+...++..+.. ..+++.+|+. .+.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~--~p~v~~vS~~~~~~~~~ 172 (197)
T cd04104 120 DLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS--EPPVFLVSNFDPSDYDF 172 (197)
T ss_pred hhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCC--CCCEEEEeCCChhhcCh
Confidence 64222 22445555666666554443 3578999998 45555
No 270
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.31 E-value=1.4e-11 Score=118.77 Aligned_cols=148 Identities=22% Similarity=0.249 Sum_probs=102.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.++|.|+|.-|||||||+.+|.+.... ... -|.-.....+..+++
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~------------------------------~i~----pt~gf~Iktl~~~~~ 60 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD------------------------------TIS----PTLGFQIKTLEYKGY 60 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc------------------------------ccC----CccceeeEEEEecce
Confidence 3689999999999999999999843210 000 122233344556899
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH----HHHHHcCCCeEEEEEeccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA----QLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l----~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
.++|||..|+..+..-+..+...+|++|+|||.++.. . +..+..++ .--+..|.+ ++|+.||.|+...
T Consensus 61 ~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~---r----~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 61 TLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRM---R----MQECKQELTELLVEERLAGAP-LLVLANKQDLPGA 132 (185)
T ss_pred EEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHH---H----HHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccc
Confidence 9999999999999999999999999999999997642 1 12222222 222345777 8999999999742
Q ss_pred chhhHHHHH--HHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIK--VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~--~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
-. .+++. -.+..++++ ..++++.+||.+|+++.+
T Consensus 133 l~--~~~i~~~~~L~~l~ks-----~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 133 LS--LEEISKALDLEELAKS-----HHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred cC--HHHHHHhhCHHHhccc-----cCceEEEEeccccccHHH
Confidence 11 12222 334444433 346889999999999865
No 271
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.31 E-value=1.6e-11 Score=124.52 Aligned_cols=136 Identities=23% Similarity=0.294 Sum_probs=89.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|.+|+|||||+|+|++...... ....++.|.......+.+.+..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~-----------------------------~~~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES-----------------------------KLSASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc-----------------------------ccCCCCcccccceeeEEECCeEE
Confidence 4799999999999999999995422110 11135677777777777789999
Q ss_pred EEEeCCCccch-------HHHHHH----hcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cC---CCeEEEE
Q 004202 421 VVLDSPGHKDF-------VPNMIS----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG---VDQLIVA 485 (768)
Q Consensus 421 ~lIDTPGh~~f-------~~~~i~----g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lg---ip~iIVV 485 (768)
+||||||..+. ...+.. ...++|++|+|+++.. . .....+.+..+.. +| .+++|||
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~--------t~~d~~~l~~l~~~fg~~~~~~~ivv 122 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-F--------TEEEEQAVETLQELFGEKVLDHTIVL 122 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-c--------CHHHHHHHHHHHHHhChHhHhcEEEE
Confidence 99999995543 222222 2356899999999976 2 2344455555444 34 2458999
Q ss_pred Eecccccccc--hhhHHHHHHHHhHHHhhcC
Q 004202 486 VNKMDAVQYS--KDRFDSIKVQLGTFLRSCG 514 (768)
Q Consensus 486 vNKmDlv~~s--~e~~~~i~~el~~~lk~~g 514 (768)
+|+.|.+... ++.+......+..+++.++
T Consensus 123 ~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 123 FTRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred EECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 9999977521 1112222356667776665
No 272
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.29 E-value=1.5e-11 Score=125.06 Aligned_cols=106 Identities=15% Similarity=0.073 Sum_probs=65.5
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH--cCCCeEEEEEecccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~--lgip~iIVVvNKmDlv~ 493 (768)
....+.||||+|+++++. ...+..+|++|||+|.++. .+|+.+... .+..+.. -++| +|+|.||+|+.+
T Consensus 64 ~~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~---~Sf~~~~~~---w~~~i~~~~~~~p-iilvgNK~DL~~ 134 (195)
T cd01873 64 VSVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASP---NSLRNVKTM---WYPEIRHFCPRVP-VILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCCh---hHHHHHHHH---HHHHHHHhCCCCC-EEEEEEchhccc
Confidence 346788999999876432 2357789999999999874 223221111 1122222 2566 899999999864
Q ss_pred cchh---------------hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKD---------------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e---------------~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+ ...-..++...+.+.++ ++|+.+||++|.|+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~~~V~e 186 (195)
T cd01873 135 ADLDEVNRARRPLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQFGVKD 186 (195)
T ss_pred cccchhhhcccccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCCCCHHH
Confidence 1100 00011233444555544 4789999999999976
No 273
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.29 E-value=1.3e-11 Score=118.34 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=100.7
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe--e
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--S 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~--~ 415 (768)
...++|.++|..|+|||+|+-+++.. ....+....|.++.....+. .
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~-------------------------------~fd~~~~~tIGvDFkvk~m~vdg 57 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSN-------------------------------TFDDLHPTTIGVDFKVKVMQVDG 57 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhc-------------------------------ccCccCCceeeeeEEEEEEEEcC
Confidence 34689999999999999999998831 11222223344454444444 4
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
+..++.||||+|+++|...+-++.++|..+|+|.|.+... .|..+..+..|.-.....-.+- .++|.||+|...
T Consensus 58 ~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rd---tf~kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes-- 131 (209)
T KOG0080|consen 58 KRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRD---TFVKLDIWLKELDLYSTNPDII-KMLVGNKIDKES-- 131 (209)
T ss_pred ceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchh---hHHhHHHHHHHHHhhcCCccHh-Hhhhcccccchh--
Confidence 5577899999999999999999999999999999998642 2322222222222222222332 367999999653
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|. --+++=..+.+... .-|+.+||++.+|+..
T Consensus 132 -~R~-V~reEG~kfAr~h~-----~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 132 -ERV-VDREEGLKFARKHR-----CLFIECSAKTRENVQC 164 (209)
T ss_pred -ccc-ccHHHHHHHHHhhC-----cEEEEcchhhhccHHH
Confidence 221 11233344444433 4689999999999965
No 274
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.28 E-value=5.2e-11 Score=122.30 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=91.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE--ee
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DS 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~--~~ 415 (768)
...++|+++|+.|+|||||+++++.. .. ..+..+.+..+.....+ ..
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~--~~-----------------------------~~~~~~t~~~~~~~~~~~~~~ 55 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTG--EF-----------------------------EKKYIPTLGVEVHPLKFYTNC 55 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhC--CC-----------------------------CCCCCCccceEEEEEEEEECC
Confidence 45689999999999999999887631 11 00111112222222222 33
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-H-cCCCeEEEEEecccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-S-FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~-~-lgip~iIVVvNKmDlv~ 493 (768)
+...+.+|||+|+.+|..........+|++|+|+|.+... .|..+ ...+..+. . -.+| ++++.||+|+.+
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~----~~~~~~i~~~~~~~~-i~lv~nK~Dl~~ 127 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRI---TYKNV----PNWHRDIVRVCENIP-IVLVGNKVDVKD 127 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHH---HHHHH----HHHHHHHHHhCCCCC-EEEEEECccCcc
Confidence 4567889999999998777777778899999999998752 12111 11111111 1 2456 788999999864
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .... +...+.+.. .+.++++||++|.|+.+
T Consensus 128 ~--~~~~----~~~~~~~~~-----~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 128 R--QVKA----RQITFHRKK-----NLQYYDISAKSNYNFEK 158 (215)
T ss_pred c--cCCH----HHHHHHHHc-----CCEEEEEeCCCCCCHHH
Confidence 2 1111 111223222 35789999999999965
No 275
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.28 E-value=6.8e-11 Score=121.05 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=94.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-----
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS----- 415 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~----- 415 (768)
++|+++|..++|||||+++|++.. | ..+..+.+..+.....+..
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~----------------------f---------~~~~~~Tig~~~~~k~~~~~~~~~ 49 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQ----------------------V---------LGRPSWTVGCSVDVKHHTYKEGTP 49 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC----------------------C---------CCCCCcceeeeEEEEEEEEcCCCC
Confidence 479999999999999999998421 0 1111122222222222322
Q ss_pred --CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH------------------
Q 004202 416 --KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR------------------ 475 (768)
Q Consensus 416 --~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~------------------ 475 (768)
....+.||||+|+++|.......+..+|++|+|+|.+... +|+.+..+..+......
T Consensus 50 ~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~---Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~ 126 (202)
T cd04102 50 EEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRK---SSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFG 126 (202)
T ss_pred CCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChH---HHHHHHHHHHHHHHhhccccccccccccccccccC
Confidence 2357889999999999887778889999999999998752 34333333333322210
Q ss_pred HcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 476 SFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 476 ~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..++| +|||.||+|+.+...-.-+.....-..+.++++. +.|.+++..+..+..
T Consensus 127 ~~~~P-iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~-----~~i~~~c~~~~~~~~ 180 (202)
T cd04102 127 GNQIP-LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNA-----EEINLNCTNGRLLAA 180 (202)
T ss_pred CCCce-EEEEEECccchhhcccchHHHhhHhhhHHHhcCC-----ceEEEecCCcccccC
Confidence 12466 8999999999752111111122222333444553 457788887776654
No 276
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.26 E-value=2.8e-11 Score=129.31 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=96.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe-eCCeE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYH 419 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~-~~~~~ 419 (768)
--|++||.+|||||||+++++.....|... +-+|+......+. .....
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadY-------------------------------pFTTL~PnLGvV~~~~~~s 208 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADY-------------------------------PFTTLVPNLGVVRVDGGES 208 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCC-------------------------------ccccccCcccEEEecCCCc
Confidence 458999999999999999999765554322 2345554444443 35667
Q ss_pred EEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cCCCeEEEEEecccc
Q 004202 420 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDA 491 (768)
Q Consensus 420 i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVvNKmDl 491 (768)
+++.|.||..+ +-...++.+..+-++++|||.+...-..-.+.......|.-.+-.. ...| .+||+||||+
T Consensus 209 fv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~-~ivv~NKiD~ 287 (369)
T COG0536 209 FVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKP-RIVVLNKIDL 287 (369)
T ss_pred EEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCc-eEEEEeccCC
Confidence 99999999544 3344566677789999999998532100011111111111122122 2444 6899999996
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+. +.+.++.+++.+.... ++ ..+++|||++++|+.+
T Consensus 288 ~~-~~e~~~~~~~~l~~~~---~~----~~~~~ISa~t~~g~~~ 323 (369)
T COG0536 288 PL-DEEELEELKKALAEAL---GW----EVFYLISALTREGLDE 323 (369)
T ss_pred Cc-CHHHHHHHHHHHHHhc---CC----CcceeeehhcccCHHH
Confidence 64 3666666666665543 21 1223499999999976
No 277
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=4.3e-11 Score=113.32 Aligned_cols=149 Identities=21% Similarity=0.257 Sum_probs=104.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE--EE--Eee
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--AY--FDS 415 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~--~~--~~~ 415 (768)
.++|+++|..|+|||.|+.+++.. ... ...|-|+-+.+ .. +..
T Consensus 7 lfkivlvgnagvgktclvrrftqg--lfp-------------------------------pgqgatigvdfmiktvev~g 53 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQG--LFP-------------------------------PGQGATIGVDFMIKTVEVNG 53 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhcc--CCC-------------------------------CCCCceeeeeEEEEEEEECC
Confidence 479999999999999999999942 111 11344544332 22 334
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
+..++.||||+|+++|..-+.++.+.|+++|||.|.+. +..|+-+-.+.+|.-..+..--++ |+|-||+|+.+.
T Consensus 54 ekiklqiwdtagqerfrsitqsyyrsahalilvydisc---qpsfdclpewlreie~yan~kvlk--ilvgnk~d~~dr- 127 (213)
T KOG0095|consen 54 EKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC---QPSFDCLPEWLREIEQYANNKVLK--ILVGNKIDLADR- 127 (213)
T ss_pred eEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc---CcchhhhHHHHHHHHHHhhcceEE--Eeeccccchhhh-
Confidence 55678899999999999999999999999999999875 456776666777766655543333 789999998752
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+.-+.+-+++... ...-|+.+||+..+|+..
T Consensus 128 revp~qigeefs~~--------qdmyfletsakea~nve~ 159 (213)
T KOG0095|consen 128 REVPQQIGEEFSEA--------QDMYFLETSAKEADNVEK 159 (213)
T ss_pred hhhhHHHHHHHHHh--------hhhhhhhhcccchhhHHH
Confidence 12223333333332 123467899999999966
No 278
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.2e-11 Score=122.17 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=100.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~- 417 (768)
-.++|+++|.+++|||-|+.+++. +....+....|.+..+...+..++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftr-------------------------------nEF~~~SksTIGvef~t~t~~vd~k 61 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTR-------------------------------NEFSLESKSTIGVEFATRTVNVDGK 61 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcc-------------------------------cccCcccccceeEEEEeeceeecCc
Confidence 357899999999999999999983 233344445555666665555555
Q ss_pred -eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH-HHHHHc------CCCeEEEEEecc
Q 004202 418 -YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSF------GVDQLIVAVNKM 489 (768)
Q Consensus 418 -~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l-~ll~~l------gip~iIVVvNKm 489 (768)
....||||+|+++|..-+..+.++|-+||||.|.+.. ++.+++ +++..| .+. +++|.||+
T Consensus 62 ~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~-----------~Tfenv~rWL~ELRdhad~niv-imLvGNK~ 129 (222)
T KOG0087|consen 62 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRR-----------QTFENVERWLKELRDHADSNIV-IMLVGNKS 129 (222)
T ss_pred EEEEeeecccchhhhccccchhhcccceeEEEEechhH-----------HHHHHHHHHHHHHHhcCCCCeE-EEEeecch
Confidence 4567999999999998889999999999999999863 333332 222222 455 78899999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
||..- ... -.++-+.+.+. ..+.|+.+||+.+.|+.+
T Consensus 130 DL~~l-raV---~te~~k~~Ae~-----~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 130 DLNHL-RAV---PTEDGKAFAEK-----EGLFFLETSALDATNVEK 166 (222)
T ss_pred hhhhc-ccc---chhhhHhHHHh-----cCceEEEecccccccHHH
Confidence 98641 111 11222222222 236789999999999976
No 279
>PLN00023 GTP-binding protein; Provisional
Probab=99.20 E-value=1.7e-10 Score=124.94 Aligned_cols=146 Identities=21% Similarity=0.185 Sum_probs=88.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhcc--CeEEEEEEEEE
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERER--GITMTVAVAYF 413 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~--GiTid~~~~~~ 413 (768)
.....+||+++|..++|||||+.+|+... | .....+ |.+.......+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~----------------------F---------~~~~~pTIG~d~~ik~I~~ 65 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGS----------------------S---------IARPPQTIGCTVGVKHITY 65 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCC----------------------c---------ccccCCceeeeEEEEEEEE
Confidence 34566899999999999999999998421 0 001112 22222222222
Q ss_pred ee-------------CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-----
Q 004202 414 DS-------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----- 475 (768)
Q Consensus 414 ~~-------------~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~----- 475 (768)
.. ....+.||||+|+++|...+-..+..+|++|+|+|.+.. ..|+.+..+..+......
T Consensus 66 ~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr---~SFenL~kWl~eI~~~~~~s~p~ 142 (334)
T PLN00023 66 GSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR---RTKTSLQKWASEVAATGTFSAPL 142 (334)
T ss_pred CCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhccccccc
Confidence 11 235688999999999988888889999999999999874 233322222222211110
Q ss_pred ------HcCCCeEEEEEecccccccchhhH--HHHHHHHhHHHhhcCCC
Q 004202 476 ------SFGVDQLIVAVNKMDAVQYSKDRF--DSIKVQLGTFLRSCGFK 516 (768)
Q Consensus 476 ------~lgip~iIVVvNKmDlv~~s~e~~--~~i~~el~~~lk~~g~~ 516 (768)
...++ +|||.||+|+......+. ....++..++.+..++-
T Consensus 143 ~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 143 GSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred ccccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCCC
Confidence 01356 899999999964211011 11345566666666654
No 280
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.19 E-value=4.8e-10 Score=120.19 Aligned_cols=143 Identities=19% Similarity=0.275 Sum_probs=88.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.++|+++|+.|+|||||+|+|++..-...... .+.......+.+++......+..++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~---------------------~~~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYP---------------------PDPAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCC---------------------CCccccccCCceEEEEEEEEEEECCEE
Confidence 47999999999999999999985321110000 0001112233344555455555555
Q ss_pred eEEEEEeCCCccchHH---------------------HHHH-----hcc--cCCEEEEEEecCCCccccccccchhhhHH
Q 004202 418 YHVVVLDSPGHKDFVP---------------------NMIS-----GAT--QSDAAILVIDASVGSFEVGMNTAKGLTRE 469 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~---------------------~~i~-----g~~--~aD~aILVVDA~~g~~e~~~~~~~~qt~e 469 (768)
..++||||||..++.. +... .+. .+|+++++++++... +.....+
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-------l~~~D~~ 135 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-------LKPLDIE 135 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-------CCHHHHH
Confidence 5699999999544321 1111 111 378999999987421 2334456
Q ss_pred HHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcC
Q 004202 470 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG 514 (768)
Q Consensus 470 ~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g 514 (768)
.+..+.. +++ +|+|+||+|++. .+.....++.+.+.++..+
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l~--~~e~~~~k~~i~~~l~~~~ 176 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTLT--PEELKEFKQRIMEDIEEHN 176 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcCC--HHHHHHHHHHHHHHHHHcC
Confidence 6666654 677 899999999975 4455667777888777665
No 281
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.18 E-value=4.6e-11 Score=126.28 Aligned_cols=141 Identities=19% Similarity=0.231 Sum_probs=100.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-C
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-K 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-~ 416 (768)
...+.|++||++|+|||||+++|+ .......+.+++ |.|+....... .
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT-~Aal~p~drLFA------------------------------TLDpT~h~a~Lps 224 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALT-KAALYPNDRLFA------------------------------TLDPTLHSAHLPS 224 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHH-hhhcCccchhhe------------------------------eccchhhhccCCC
Confidence 356889999999999999999999 444433333322 55544443333 5
Q ss_pred CeEEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC------eE
Q 004202 417 NYHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD------QL 482 (768)
Q Consensus 417 ~~~i~lIDTPGh~~--------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip------~i 482 (768)
+..+.+.||-|+.. .+..++..+..+|++|+|+|.+++.. ..|....+..++.+|++ .+
T Consensus 225 g~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~a-------e~q~e~Vl~vL~~igv~~~pkl~~m 297 (410)
T KOG0410|consen 225 GNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNA-------EEQRETVLHVLNQIGVPSEPKLQNM 297 (410)
T ss_pred CcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccH-------HHHHHHHHHHHHhcCCCcHHHHhHH
Confidence 67789999999443 45566777888999999999999863 46777888899999996 34
Q ss_pred EEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 483 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 483 IVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
|=|-||+|....-.+. .++ ..+++||++|+|+.+
T Consensus 298 ieVdnkiD~e~~~~e~------------------E~n-~~v~isaltgdgl~e 331 (410)
T KOG0410|consen 298 IEVDNKIDYEEDEVEE------------------EKN-LDVGISALTGDGLEE 331 (410)
T ss_pred HhhccccccccccCcc------------------ccC-CccccccccCccHHH
Confidence 5677888865311000 011 248999999999976
No 282
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=123.68 Aligned_cols=86 Identities=26% Similarity=0.318 Sum_probs=66.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..-.|++||.+++|||||+++|++....+. .| +-+|....-..+++++.
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva-------------------~y------------~FTTl~~VPG~l~Y~ga 110 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVA-------------------DY------------PFTTLEPVPGMLEYKGA 110 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCcccc-------------------cc------------CceecccccceEeecCc
Confidence 457899999999999999999995432221 11 23566777777888999
Q ss_pred EEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCc
Q 004202 419 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGS 455 (768)
Q Consensus 419 ~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~ 455 (768)
+|.|+|+||... --+..++.++.||++|+|+|+....
T Consensus 111 ~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 111 QIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred eEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 999999999443 1345677889999999999998653
No 283
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.9e-10 Score=109.43 Aligned_cols=149 Identities=18% Similarity=0.265 Sum_probs=98.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--C
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~ 417 (768)
.+++.++|+.|.|||.|+.+++.. ..+....+.+.++.+.+.+..+ .
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~-------------------------------kfkDdssHTiGveFgSrIinVGgK~ 57 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIEN-------------------------------KFKDDSSHTIGVEFGSRIVNVGGKT 57 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHh-------------------------------hhcccccceeeeeecceeeeecCcE
Confidence 368999999999999999999831 0111122344555555555443 4
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCe--EEEEEecccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ--LIVAVNKMDAVQYS 495 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~--iIVVvNKmDlv~~s 495 (768)
.++.||||+|+++|...+..+.++|-.++||.|++... .|+.+ -.-+.-++.+.-+. +|++-||-|+-+..
T Consensus 58 vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrd---sfnaL----tnWL~DaR~lAs~nIvviL~GnKkDL~~~R 130 (214)
T KOG0086|consen 58 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRD---SFNAL----TNWLTDARTLASPNIVVILCGNKKDLDPER 130 (214)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceEEEEeccchh---hHHHH----HHHHHHHHhhCCCcEEEEEeCChhhcChhh
Confidence 56889999999999999999999999999999998642 22221 11223344555453 45677999986522
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+-.+ .+...+.. ...+.+..+||++|+|+.+
T Consensus 131 ~Vtf----lEAs~Faq-----Enel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 131 EVTF----LEASRFAQ-----ENELMFLETSALTGENVEE 161 (214)
T ss_pred hhhH----HHHHhhhc-----ccceeeeeecccccccHHH
Confidence 2112 12222221 2346778999999999976
No 284
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.15 E-value=7.7e-11 Score=108.84 Aligned_cols=114 Identities=25% Similarity=0.288 Sum_probs=71.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
||+|+|..|+|||||+++|++.... +........+.++.............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP---------------------------DNSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc---------------------------ccccccccCCCcEEEEEEEecCCceEEE
Confidence 6999999999999999999954221 0000111123334333344444445589
Q ss_pred EEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc-----CCCeEEEEEeccc
Q 004202 422 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMD 490 (768)
Q Consensus 422 lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l-----gip~iIVVvNKmD 490 (768)
|+|++|+..+.......+..+|++|+|+|+++.. ++ .+..+.+..+..+ .+| +|||.||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~---s~----~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE---SL----EYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH---HH----HHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChH---HH----HHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 9999999887765444488899999999998742 12 1222222223222 366 899999998
No 285
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.14 E-value=5.7e-10 Score=114.19 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=96.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--C
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~ 417 (768)
..+|+++|..|+|||||+++|.+.. ...+..+.++........... .
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 53 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDE-------------------------------FPEGYPPTIGNLDPAKTIEPYRRN 53 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCc-------------------------------CcccCCCceeeeeEEEEEEeCCCE
Confidence 3899999999999999999999421 112222333333333333322 4
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc---CCCeEEEEEeccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l---gip~iIVVvNKmDlv~~ 494 (768)
..+.+|||+|+++|...+-.+...++++++|+|..... . ....+.+....+..+ .++ +|+|.||+|+...
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~---~---~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~ 126 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRE---S---SDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDE 126 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccch---h---hhHHHHHHHHHHHHhCCCCce-EEEEecccccccc
Confidence 66889999999999999999999999999999988621 1 112333333344443 366 8999999999874
Q ss_pred chhhHHHHHHHH---------hHHHhhcCCCCCCCcEEEeecc--cCCCccc
Q 004202 495 SKDRFDSIKVQL---------GTFLRSCGFKDASLTWIPLSAL--ENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el---------~~~lk~~g~~~~~i~~IpVSA~--tG~gI~e 535 (768)
.... ..+...+ ........ .....++.+|++ ++.++.+
T Consensus 127 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~v~~ 175 (219)
T COG1100 127 QSSS-EEILNQLNREVVLLVLAPKAVLPE--VANPALLETSAKSLTGPNVNE 175 (219)
T ss_pred hhHH-HHHHhhhhcCcchhhhHhHHhhhh--hcccceeEeecccCCCcCHHH
Confidence 3221 1111111 00000000 012237899999 8888865
No 286
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.6e-09 Score=120.49 Aligned_cols=247 Identities=23% Similarity=0.301 Sum_probs=153.8
Q ss_pred CCCCcCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEE
Q 004202 330 LPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA 409 (768)
Q Consensus 330 ~~~~~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~ 409 (768)
..+...+..+++.||++|++|.|||||+..|.... +...-.+...-+|+-.
T Consensus 59 vdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~----------------------------tk~ti~~i~GPiTvvs- 109 (1077)
T COG5192 59 VDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRF----------------------------TKQTIDEIRGPITVVS- 109 (1077)
T ss_pred ccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHH----------------------------HHhhhhccCCceEEee-
Confidence 33444455678889999999999999999998421 1111111122234432
Q ss_pred EEEEeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004202 410 VAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 410 ~~~~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
.+.++++|+.+| .-+..|+.-+..||++||+||++-|. ...|.|.|.++...|.|+++-|+|..
T Consensus 110 -----gK~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfGf--------EMETmEFLnil~~HGmPrvlgV~Thl 173 (1077)
T COG5192 110 -----GKTRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFGF--------EMETMEFLNILISHGMPRVLGVVTHL 173 (1077)
T ss_pred -----cceeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccCc--------eehHHHHHHHHhhcCCCceEEEEeec
Confidence 366889999999 44778999999999999999999772 34899999999999999999999999
Q ss_pred cccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhhh--ccCCCCCCCCC
Q 004202 490 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAID--SLRPPPREFSK 567 (768)
Q Consensus 490 Dlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L~--~l~~~~~~~~~ 567 (768)
|+.. ++..+..+++.|.-.+..--|. ...+|.+|...+--..++.- ..|-.+|. .+.+-......
T Consensus 174 Dlfk-~~stLr~~KKrlkhRfWtEiyq--GaKlFylsgV~nGRYpDrei----------lnLsRfisVMKfRPl~Wrn~H 240 (1077)
T COG5192 174 DLFK-NPSTLRSIKKRLKHRFWTEIYQ--GAKLFYLSGVENGRYPDREI----------LNLSRFISVMKFRPLEWRNMH 240 (1077)
T ss_pred cccc-ChHHHHHHHHHHhhhHHHHHcC--CceEEEecccccCCCCCHHH----------HHHHHHHhhhcccccccccCC
Confidence 9986 3666777777777655544443 34668888876544433110 01222221 11111111122
Q ss_pred C---------ceeeeEeEEeeC-CC-cEEEEEEEec-CcccCCCEEEEccCCeeeEEEeeeecccccc--eeccCCceEE
Q 004202 568 P---------LLMPICDVLKSQ-HG-QVSACGKLEA-GALRSGLKVLVLPSGEVGTVHSIERDSQSCS--VARAGDNIAV 633 (768)
Q Consensus 568 p---------lr~~I~dv~~~~-~G-~V~v~G~V~s-G~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~--~A~aGd~V~l 633 (768)
| +.+|++ ++..+ +| .+.++|++.. |..+...+|.|...| ...+..|+.-..||. .|.-|.+-.|
T Consensus 241 Py~laDR~~Dlt~p~~-ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvG-Df~~adve~L~DPcPp~~a~~~rrRrL 318 (1077)
T COG5192 241 PYVLADRVDDLTLPVD-IEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVG-DFRMADVEVLIDPCPPPDADHGRRRRL 318 (1077)
T ss_pred ceeehhhhccccchhh-hhhccccCceEEEEEEecCCCCCCCCceEeccCcc-ccchhhhhhcCCCCCCCcccchhhccc
Confidence 2 223331 22222 44 3558999987 777888888875444 344555555444444 2334444445
Q ss_pred Eec
Q 004202 634 SLQ 636 (768)
Q Consensus 634 ~L~ 636 (768)
.++
T Consensus 319 s~k 321 (1077)
T COG5192 319 SLK 321 (1077)
T ss_pred chh
Confidence 444
No 287
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.12 E-value=4e-10 Score=117.70 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=99.4
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEE-EEee
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA-YFDS 415 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~-~~~~ 415 (768)
.+++++|.++|.+|+|||||+|+|.+....... .-|++.+.... ....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~-------------------------------~vg~~t~~~~~~~~~~ 84 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS-------------------------------KVGVGTDITTRLRLSY 84 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee-------------------------------ecccCCCchhhHHhhc
Confidence 457799999999999999999999943221110 01222221111 1123
Q ss_pred CCeEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCC-CeEEEEEe
Q 004202 416 KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVN 487 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgi-p~iIVVvN 487 (768)
++..++||||||..+ +....+..+...|++++++++.+.. .......++-+...+. .++|++||
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dra--------L~~d~~f~~dVi~~~~~~~~i~~Vt 156 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRA--------LGTDEDFLRDVIILGLDKRVLFVVT 156 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCcc--------ccCCHHHHHHHHHhccCceeEEEEe
Confidence 567899999999665 7777888899999999999998763 2334444444444444 56999999
Q ss_pred ccccccc----c-------hhh---HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 488 KMDAVQY----S-------KDR---FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 488 KmDlv~~----s-------~e~---~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..|+... + ... .++-.+.+.+++.. -.|++.+|+..+.|+..
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~------V~pV~~~~~r~~wgl~~ 212 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE------VKPVVAVSGRLPWGLKE 212 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh------cCCeEEeccccCccHHH
Confidence 9998642 2 111 12222333333322 34778889899999865
No 288
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.11 E-value=2.3e-10 Score=108.42 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=102.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
...+.++|-.++|||||++.+.. |... +.-+-|+-...+.++.+...
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~--g~~~-------------------------------edmiptvGfnmrk~tkgnvt 66 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIAR--GQYL-------------------------------EDMIPTVGFNMRKVTKGNVT 66 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEee--ccch-------------------------------hhhcccccceeEEeccCceE
Confidence 46799999999999999998862 1111 01223444445556667788
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhH
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 499 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~ 499 (768)
+.+||.||+.+|...+.++.+..+++++||||.++. .+..........+......|+| ++|.-||.|+.++-.+
T Consensus 67 iklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~---k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL~~-- 140 (186)
T KOG0075|consen 67 IKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPD---KLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGALSK-- 140 (186)
T ss_pred EEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcc---cchhhHHHHHHHhcchhhcCCc-EEEecccccCcccccH--
Confidence 999999999999999999999999999999998752 1211111222222222335888 8999999999764221
Q ss_pred HHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 500 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 500 ~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.++-..+--..+.+..+..+.||+++..|++.
T Consensus 141 ----~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 141 ----IALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred ----HHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 11111111123344567789999999999965
No 289
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.2e-10 Score=115.06 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=107.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
+...+|+++|--+|||||++..|-. +.+. ..--|+......+.+++
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~--~E~v--------------------------------ttvPTiGfnVE~v~ykn 60 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIV--------------------------------TTVPTIGFNVETVEYKN 60 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeecc--CCcc--------------------------------cCCCccccceeEEEEcc
Confidence 3457999999999999999988862 1110 11225555666677789
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH-HHHHH--c-CCCeEEEEEecccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRS--F-GVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l-~ll~~--l-gip~iIVVvNKmDlv~ 493 (768)
..+++||..|+..+.+.+..+....+++|+|||+++.. .+ ...++.+ .++.. + ++| ++|..||.|+.+
T Consensus 61 ~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~---Ri----~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~ 132 (181)
T KOG0070|consen 61 ISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRE---RI----EEAKEELHRMLAEPELRNAP-LLVFANKQDLPG 132 (181)
T ss_pred eEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHH---HH----HHHHHHHHHHHcCcccCCce-EEEEechhhccc
Confidence 99999999999999999999999999999999998742 11 2222222 22222 2 444 899999999986
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.-. ..++.+.|....+......+-.++|.+|+|+.+
T Consensus 133 als------~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 133 ALS------AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred cCC------HHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 321 234555554455555677889999999999966
No 290
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.10 E-value=5.7e-11 Score=123.07 Aligned_cols=193 Identities=19% Similarity=0.262 Sum_probs=113.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccch--------hhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEE
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQ--------KQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA 409 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~--------~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~ 409 (768)
..++.|.++|..|+||||++.+|...+..-.. ..+..+.-.+..+-+.+..|.-.|.+.......||+..+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 45678999999999999999999876422110 0111111122223345556666676666667777765432
Q ss_pred EEE--Ee---------eCCeEEEEEeCCCccchHHHHHHh--------cccCCEEEEEEecCCCccccccccchhhhHHH
Q 004202 410 VAY--FD---------SKNYHVVVLDSPGHKDFVPNMISG--------ATQSDAAILVIDASVGSFEVGMNTAKGLTREH 470 (768)
Q Consensus 410 ~~~--~~---------~~~~~i~lIDTPGh~~f~~~~i~g--------~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~ 470 (768)
... |+ .+...+.||||||+.+.+....+| ...+-++++|||......... .+....-.
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~t---FMSNMlYA 173 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTT---FMSNMLYA 173 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchh---HHHHHHHH
Confidence 211 11 134679999999988744333222 234678899999765422211 13333444
Q ss_pred HHHHHHcCCCeEEEEEecccccccc-----hhhHHHHHHHHhH--------HHhhc-----CCCCCCCcEEEeecccCCC
Q 004202 471 AQLIRSFGVDQLIVAVNKMDAVQYS-----KDRFDSIKVQLGT--------FLRSC-----GFKDASLTWIPLSALENQN 532 (768)
Q Consensus 471 l~ll~~lgip~iIVVvNKmDlv~~s-----~e~~~~i~~el~~--------~lk~~-----g~~~~~i~~IpVSA~tG~g 532 (768)
..++....+| +|||+||+|+.+.. ...|+...+.+.. +..+. .|. .++..+.+|+.+|.|
T Consensus 174 cSilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY-~~lrtv~VSs~tG~G 251 (366)
T KOG1532|consen 174 CSILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFY-RSLRTVGVSSVTGEG 251 (366)
T ss_pred HHHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHH-hhCceEEEecccCCc
Confidence 5566667888 89999999987621 1123333333332 11111 111 357889999999999
Q ss_pred ccc
Q 004202 533 LVT 535 (768)
Q Consensus 533 I~e 535 (768)
..+
T Consensus 252 ~dd 254 (366)
T KOG1532|consen 252 FDD 254 (366)
T ss_pred HHH
Confidence 976
No 291
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.8e-10 Score=110.86 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=109.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccc-hhhhccCeEEEEEEEEEeeC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDES-AEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~-~~Ere~GiTid~~~~~~~~~ 416 (768)
+....|+|+|.-+|||||++.++-...... .... ..+ -..|+-.....++..
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~-------------------------~~~l~~~k--i~~tvgLnig~i~v~ 67 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKA-------------------------YGGLNPSK--ITPTVGLNIGTIEVC 67 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhh-------------------------hcCCCHHH--eecccceeecceeec
Confidence 456789999999999999999986321100 0000 011 112333444455556
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
+..+.|||.-|++.....+..+...++++|+||||++.. .|+....+.+..+..-..-|+| +++.+||-|+.+.
T Consensus 68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~e---R~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~~-- 141 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRE---RFEESKTAFEKVVENEKLEGAP-VLVLANKQDLQNA-- 141 (197)
T ss_pred cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHH---HHHHHHHHHHHHHHHHHhcCCc-hhhhcchhhhhhh--
Confidence 888999999999999888889999999999999999842 2333334455555556667999 7889999999763
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
....++...+.. .+..+ ....+|.||||++|+||.+
T Consensus 142 ~~~~El~~~~~~-~e~~~--~rd~~~~pvSal~gegv~e 177 (197)
T KOG0076|consen 142 MEAAELDGVFGL-AELIP--RRDNPFQPVSALTGEGVKE 177 (197)
T ss_pred hhHHHHHHHhhh-hhhcC--CccCccccchhhhcccHHH
Confidence 233333333332 22222 2456899999999999976
No 292
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.09 E-value=1e-09 Score=99.31 Aligned_cols=94 Identities=29% Similarity=0.393 Sum_probs=80.1
Q ss_pred CcccccCCCCcceeeEEEEEEEeeCC-CCCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEE
Q 004202 646 GGVLCHPDFPVAIATHLELKVLVLDF-APPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIV 724 (768)
Q Consensus 646 G~VL~~~~~p~~~~~~F~a~i~vl~~-~~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v 724 (768)
|+||+.++...+ ...|.+++.++.. ..|++.++++.||+|+..++|+|.- ++ .+.+.+|+.+.+
T Consensus 1 G~vl~~~~~~~~-~~~~~~~i~~l~~~~~~l~~~~~v~~~~Gt~~v~~ri~l----l~----------~~~~~pg~~~~a 65 (97)
T cd04094 1 GDVLADPGSLLP-TRRLDVRLTVLLSAPRPLKHRQRVHLHHGTSEVLARVVL----LD----------RDELAPGEEALA 65 (97)
T ss_pred CCEEecCCCcCC-ceEEEEEEEEECCCCccCCCCCeEEEEeccceEEEEEEe----CC----------ccccCCCCEEEE
Confidence 788998875444 5899999988764 4689999999999999999999972 23 136889999999
Q ss_pred EEEeCceEEeecccccCCcceEEEEeCC--cEEEEEEE
Q 004202 725 EVALQEPVCVEEFSNCRALGRAFLRSSG--RTIAVGIV 760 (768)
Q Consensus 725 ~l~l~~pI~~e~~~~~~~lGRfILR~~g--~TvgvG~V 760 (768)
+|+|++|+++...+ |||||+.+ +|+|+|+|
T Consensus 66 ~l~l~~pl~~~~gd------rfilR~~~~~~tiggG~V 97 (97)
T cd04094 66 QLRLEEPLVALRGD------RFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEECCcEeecCCC------eEEEeeCCCCeEEEeEEC
Confidence 99999999998865 99999988 99999986
No 293
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.08 E-value=3.2e-10 Score=107.46 Aligned_cols=149 Identities=22% Similarity=0.245 Sum_probs=101.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--e
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--~ 418 (768)
.+..|+|.+++|||+|+-++... .|.-++ -..+.++...+.++.++ .
T Consensus 9 fkllIigDsgVGKssLl~rF~dd----------------------tFs~sY---------itTiGvDfkirTv~i~G~~V 57 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD----------------------TFSGSY---------ITTIGVDFKIRTVDINGDRV 57 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc----------------------ccccce---------EEEeeeeEEEEEeecCCcEE
Confidence 46789999999999999888731 111111 12233455555555544 5
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 498 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~ 498 (768)
.+.||||+|+++|...+....+..+++|+|.|.+.++ +|.....+..+.-..+. .+| -++|.||.|..+ +
T Consensus 58 kLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~E---SF~Nv~rWLeei~~ncd--sv~-~vLVGNK~d~~~----R 127 (198)
T KOG0079|consen 58 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE---SFNNVKRWLEEIRNNCD--SVP-KVLVGNKNDDPE----R 127 (198)
T ss_pred EEEEeecccHHHHHHHHHHHccCCceEEEEEECcchh---hhHhHHHHHHHHHhcCc--ccc-ceecccCCCCcc----c
Confidence 6889999999999999999999999999999999874 45544444444433332 456 478999999864 2
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
---..++...+..+.| +.+|.+||+..+|+..
T Consensus 128 rvV~t~dAr~~A~~mg-----ie~FETSaKe~~NvE~ 159 (198)
T KOG0079|consen 128 RVVDTEDARAFALQMG-----IELFETSAKENENVEA 159 (198)
T ss_pred eeeehHHHHHHHHhcC-----chheehhhhhcccchH
Confidence 1112234444544444 5679999999999965
No 294
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.07 E-value=2e-09 Score=117.37 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=28.4
Q ss_pred eEEEEEeCCCc----cch---HHHHHHhcccCCEEEEEEecCC
Q 004202 418 YHVVVLDSPGH----KDF---VPNMISGATQSDAAILVIDASV 453 (768)
Q Consensus 418 ~~i~lIDTPGh----~~f---~~~~i~g~~~aD~aILVVDA~~ 453 (768)
..+.||||||. .++ ....+..++.||++|+|||+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 56999999996 222 3455677899999999999974
No 295
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.06 E-value=4.9e-10 Score=112.28 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe---eCC
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD---SKN 417 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~---~~~ 417 (768)
..|.|+|+.|||||+|+.+|.+....- .-+.+.... .+. ..+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~----------------------------------T~tS~e~n~-~~~~~~~~~ 48 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP----------------------------------TVTSMENNI-AYNVNNSKG 48 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS-------------------------------------B---SSEEE-ECCGSSTCG
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC----------------------------------eeccccCCc-eEEeecCCC
Confidence 579999999999999999999531100 001111111 111 245
Q ss_pred eEEEEEeCCCccchHHHHHHh---cccCCEEEEEEecCCCccccccccchhhhHHHHHHH-H--H--cCCCeEEEEEecc
Q 004202 418 YHVVVLDSPGHKDFVPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-R--S--FGVDQLIVAVNKM 489 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g---~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll-~--~--lgip~iIVVvNKm 489 (768)
..+.|||+|||.++....+.. ...+.++|+|||+.. +...+ ..+.|+|.-+ . . ...++++|+.||.
T Consensus 49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~--~~~~~----~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST--DQKEL----RDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT--HHHHH----HHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc--chhhH----HHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 679999999999987777665 788999999999974 12111 2233333211 1 1 1233499999999
Q ss_pred cccc
Q 004202 490 DAVQ 493 (768)
Q Consensus 490 Dlv~ 493 (768)
|+..
T Consensus 123 Dl~~ 126 (181)
T PF09439_consen 123 DLFT 126 (181)
T ss_dssp TSTT
T ss_pred cccc
Confidence 9875
No 296
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=4.1e-10 Score=106.73 Aligned_cols=152 Identities=21% Similarity=0.245 Sum_probs=100.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
.++.|+|...+|||+++-+.+.. +|--++. +.-|+...+...+-.-+...+
T Consensus 22 fKlliiGnssvGKTSfl~ry~dd----------------------SFt~afv-------sTvGidFKvKTvyr~~kRikl 72 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADD----------------------SFTSAFV-------STVGIDFKVKTVYRSDKRIKL 72 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcc----------------------cccccee-------eeeeeeEEEeEeeecccEEEE
Confidence 48999999999999999888732 1111111 112333223322222244678
Q ss_pred EEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHH
Q 004202 421 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 500 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~ 500 (768)
.+|||+|+++|...+-...++|++.||+.|.+.. .+|..++.+. -.+......+++ +|+|.||+|+-+ +|.-
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNe---eSf~svqdw~-tqIktysw~naq-vilvgnKCDmd~---eRvi 144 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNE---ESFNSVQDWI-TQIKTYSWDNAQ-VILVGNKCDMDS---ERVI 144 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCH---HHHHHHHHHH-HHheeeeccCce-EEEEecccCCcc---ceee
Confidence 9999999999999899999999999999999874 3444332111 111112335666 899999999864 3321
Q ss_pred HHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 501 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 501 ~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..+..+.+..++|| .|+..||+.+.|+.+
T Consensus 145 -s~e~g~~l~~~LGf-----efFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 145 -SHERGRQLADQLGF-----EFFETSAKENINVKQ 173 (193)
T ss_pred -eHHHHHHHHHHhCh-----HHhhhcccccccHHH
Confidence 12344555666776 679999999999966
No 297
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.02 E-value=9e-10 Score=120.45 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=63.1
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
..++.++||||+|..+--. ..+..+|++|+|++...|. .++...... +.+. -|+|+||+|+.+.
T Consensus 146 ~~g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd------~iq~~k~gi------~E~a-DIiVVNKaDl~~~ 209 (332)
T PRK09435 146 AAGYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGD------ELQGIKKGI------MELA-DLIVINKADGDNK 209 (332)
T ss_pred ccCCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchH------HHHHHHhhh------hhhh-heEEeehhcccch
Confidence 3578999999999663221 1355799999998744431 011111111 2222 2789999999852
Q ss_pred chhhHHHHHHHHhHHHhhcCC--CCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGF--KDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~--~~~~i~~IpVSA~tG~gI~e 535 (768)
...+....++...+..... .....+++++||++|.|+.+
T Consensus 210 --~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIde 250 (332)
T PRK09435 210 --TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDE 250 (332)
T ss_pred --hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHH
Confidence 3344555666665543221 11235889999999999976
No 298
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.02 E-value=8.4e-09 Score=108.94 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=75.2
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
+....++|+++|.+|+|||||+|+|++...... ..-.+.|..........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v------------------------------~~~~~~T~~~~~~~~~~ 76 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAAT------------------------------SAFQSETLRVREVSGTV 76 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCccc------------------------------CCCCCceEEEEEEEEEE
Confidence 345679999999999999999999995321110 00123455555555567
Q ss_pred CCeEEEEEeCCCccchH------HH----HHHhc--ccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-HcCC---
Q 004202 416 KNYHVVVLDSPGHKDFV------PN----MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGV--- 479 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~------~~----~i~g~--~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~-~lgi--- 479 (768)
++..++||||||..+.. .. ....+ ...|++++|...+..- + .......+..+. .+|.
T Consensus 77 ~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r----~---~~~d~~llk~I~e~fG~~i~ 149 (249)
T cd01853 77 DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYR----R---DYLDLPLLRAITDSFGPSIW 149 (249)
T ss_pred CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCC----C---CHHHHHHHHHHHHHhChhhH
Confidence 88999999999966541 11 11122 2578888887554321 1 112233333333 2452
Q ss_pred CeEEEEEecccccc
Q 004202 480 DQLIVAVNKMDAVQ 493 (768)
Q Consensus 480 p~iIVVvNKmDlv~ 493 (768)
.++|||+||+|...
T Consensus 150 ~~~ivV~T~~d~~~ 163 (249)
T cd01853 150 RNAIVVLTHAASSP 163 (249)
T ss_pred hCEEEEEeCCccCC
Confidence 35899999999874
No 299
>PTZ00099 rab6; Provisional
Probab=98.98 E-value=3.5e-09 Score=106.02 Aligned_cols=118 Identities=16% Similarity=0.119 Sum_probs=73.3
Q ss_pred cCeEEEEEEEEEee--CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--
Q 004202 402 RGITMTVAVAYFDS--KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-- 477 (768)
Q Consensus 402 ~GiTid~~~~~~~~--~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l-- 477 (768)
+.+..+.....+.. +...+.||||||+++|...+...+..||++|+|+|++... +|+.+. ..+..+....
T Consensus 11 ~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~---sf~~~~---~w~~~i~~~~~~ 84 (176)
T PTZ00099 11 STIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ---SFENTT---KWIQDILNERGK 84 (176)
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHH---HHHHHH---HHHHHHHHhcCC
Confidence 33333443333333 3467889999999999888888889999999999998742 222211 1111222222
Q ss_pred CCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 478 GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 478 gip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+| +|||.||+|+.....-.. .+...+.+..+ ..++++||++|.|+.+
T Consensus 85 ~~p-iilVgNK~DL~~~~~v~~----~e~~~~~~~~~-----~~~~e~SAk~g~nV~~ 132 (176)
T PTZ00099 85 DVI-IALVGNKTDLGDLRKVTY----EEGMQKAQEYN-----TMFHETSAKAGHNIKV 132 (176)
T ss_pred CCe-EEEEEECcccccccCCCH----HHHHHHHHHcC-----CEEEEEECCCCCCHHH
Confidence 344 799999999864211111 12222232222 4679999999999976
No 300
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.97 E-value=2.8e-09 Score=93.89 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=70.0
Q ss_pred eeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCC---eeeEEEeeeecccccceeccCCceEEEecccccccccCC
Q 004202 571 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSG 646 (768)
Q Consensus 571 ~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~---~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG 646 (768)
..|.++|++. .|++ +.|+|.+|.|++|+.+.++|.+ ...+|++|+++++.+++|.+|+.|+|.|++++ ++++|
T Consensus 3 ~~V~~vf~~~~~g~v-ag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~G 79 (84)
T cd03692 3 AEVRAVFKISKVGNI-AGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVG 79 (84)
T ss_pred EEEEEEEECCCCcEE-EEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCC
Confidence 4578899887 7887 8999999999999999999999 67799999999999999999999999999887 89999
Q ss_pred ccc
Q 004202 647 GVL 649 (768)
Q Consensus 647 ~VL 649 (768)
|+|
T Consensus 80 dvi 82 (84)
T cd03692 80 DII 82 (84)
T ss_pred CEE
Confidence 987
No 301
>PRK13768 GTPase; Provisional
Probab=98.95 E-value=4.8e-09 Score=111.13 Aligned_cols=105 Identities=20% Similarity=0.317 Sum_probs=64.2
Q ss_pred CeEEEEEeCCCccchH------HHHHHhccc--CCEEEEEEecCCCccccccccchhhhHHHHHHH-----HHcCCCeEE
Q 004202 417 NYHVVVLDSPGHKDFV------PNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-----RSFGVDQLI 483 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~------~~~i~g~~~--aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll-----~~lgip~iI 483 (768)
+..++||||||+.++. +.....+.. ++++++|+|+..+. .....+...++ ...++| +|
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~--------~~~d~~~~~~l~~~~~~~~~~~-~i 166 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAK--------TPSDFVSLLLLALSVQLRLGLP-QI 166 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhC--------CHHHHHHHHHHHHHHHHHcCCC-EE
Confidence 3479999999976643 223333433 89999999997642 12222222222 246787 89
Q ss_pred EEEecccccccchhhHHHHHHHHh------------------------HHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 484 VAVNKMDAVQYSKDRFDSIKVQLG------------------------TFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 484 VVvNKmDlv~~s~e~~~~i~~el~------------------------~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+||+|+++.. ..+.+...+. +.++..+ ...+++++|+++++|+.+
T Consensus 167 ~v~nK~D~~~~~--~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~vi~iSa~~~~gl~~ 237 (253)
T PRK13768 167 PVLNKADLLSEE--ELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG---LPVRVIPVSAKTGEGFDE 237 (253)
T ss_pred EEEEhHhhcCch--hHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC---CCCcEEEEECCCCcCHHH
Confidence 999999998632 2222222111 1223333 235789999999999976
No 302
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.95 E-value=1.4e-09 Score=104.76 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=96.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee---C
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---K 416 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~---~ 416 (768)
..++.++|..-+|||+|+..++... . .+-+++.+.+|.-.+.++. .
T Consensus 8 qfrlivigdstvgkssll~~ft~gk--f-----------------------------aelsdptvgvdffarlie~~pg~ 56 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGK--F-----------------------------AELSDPTVGVDFFARLIELRPGY 56 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCc--c-----------------------------cccCCCccchHHHHHHHhcCCCc
Confidence 4789999999999999999998421 0 1111122222211111111 1
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC---eEEEEEecccccc
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD---QLIVAVNKMDAVQ 493 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip---~iIVVvNKmDlv~ 493 (768)
..++.||||+|+++|..-+.++.+++=.+++|.|.+.. .+|+.+..+.+|.. ...+-| -+.+|-.|.|+..
T Consensus 57 riklqlwdtagqerfrsitksyyrnsvgvllvyditnr---~sfehv~~w~~ea~---m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 57 RIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR---ESFEHVENWVKEAA---MATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch---hhHHHHHHHHHHHH---HhcCCCCeeEEEEeccccchhh
Confidence 23578999999999999999999999999999999873 23333222222221 222322 2467889999974
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. +-..++-..+.+.+|+ .||.+||++|.|+.+
T Consensus 131 qR----qVt~EEaEklAa~hgM-----~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 131 QR----QVTAEEAEKLAASHGM-----AFVETSAKNGCNVEE 163 (213)
T ss_pred hc----cccHHHHHHHHHhcCc-----eEEEecccCCCcHHH
Confidence 21 1223455556666664 689999999999977
No 303
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.93 E-value=1.4e-08 Score=106.00 Aligned_cols=152 Identities=18% Similarity=0.317 Sum_probs=96.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe-eCCeEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYHV 420 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~-~~~~~i 420 (768)
||.++|..+|||||+...+.+.... .+-+.-|.|+++....+. .....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p------------------------------~dT~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP------------------------------RDTLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G------------------------------GGGGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc------------------------------hhccccCCcCCceEEEEecCCCcEE
Confidence 6899999999999999999843211 111223567777777665 356699
Q ss_pred EEEeCCCccchHHHH-----HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC-eEEEEEeccccccc
Q 004202 421 VVLDSPGHKDFVPNM-----ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-QLIVAVNKMDAVQY 494 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~-----i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip-~iIVVvNKmDlv~~ 494 (768)
.|||.||+..|..+. ..-.+.++++|+|+|+....+...+ ......+..+...... ++.|.+.|||++..
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l----~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDL----AYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHH----HHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHH----HHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 999999998887763 4446789999999999844333222 3444555555554322 38999999999752
Q ss_pred --chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeeccc
Q 004202 495 --SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 529 (768)
Q Consensus 495 --s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~t 529 (768)
..+.++.+.+.+.+.+...++. .+.++.+|...
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~--~~~~~~TSI~D 161 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIE--DITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-T--SEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc--ceEEEeccCcC
Confidence 2355677778888887776653 46788888765
No 304
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.93 E-value=7.2e-10 Score=122.29 Aligned_cols=183 Identities=17% Similarity=0.249 Sum_probs=129.8
Q ss_pred ccchhhhccccccccccCCCCCccccccccccccCcccccCCC-CcCC---CCCceEEEEEeCCCCCHHHHHHHHHHhh-
Q 004202 290 TGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPD-KKGD---RMTQLNLAIVGHVDSGKSTLSGRLLFLL- 364 (768)
Q Consensus 290 ~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~---~~~~l~VaIvG~vdaGKSTLi~~Ll~~~- 364 (768)
..++.+++++.++.+++++ .++..+.+.++.|+++..+++. ..+. .+++..|.++|-.||||||.++.|...+
T Consensus 48 Vk~fi~~ikera~g~ev~~--~l~p~q~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lk 125 (451)
T COG0541 48 VKDFIKRIKERALGEEVPK--GLTPGQQFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLK 125 (451)
T ss_pred HHHHHHHHHHHhccccCCC--CCCHHHHHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHH
Confidence 3457888999999998876 6888899999999998888774 3322 3457889999999999999999998763
Q ss_pred -----------CccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEEEEeCCC----cc
Q 004202 365 -----------GRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDSPG----HK 429 (768)
Q Consensus 365 -----------~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~lIDTPG----h~ 429 (768)
...++..+++++..+...+...|.. .....+.+ ...-+...+...++.++|+||+| .+
T Consensus 126 k~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~--~~~~~Pv~-----Iak~al~~ak~~~~DvvIvDTAGRl~ide 198 (451)
T COG0541 126 KKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS--GTEKDPVE-----IAKAALEKAKEEGYDVVIVDTAGRLHIDE 198 (451)
T ss_pred HcCCceEEEecccCChHHHHHHHHHHHHcCCceecC--CCCCCHHH-----HHHHHHHHHHHcCCCEEEEeCCCcccccH
Confidence 5567788999999999999887732 00111111 11122233444678999999999 23
Q ss_pred chHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004202 430 DFVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 430 ~f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
+++.++ +..+..+|-+||||||..| |.......+..-.++---|++||+|--
T Consensus 199 ~Lm~El~~Ik~~~~P~E~llVvDam~G-----------QdA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 199 ELMDELKEIKEVINPDETLLVVDAMIG-----------QDAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEecccc-----------hHHHHHHHHHhhhcCCceEEEEcccCC
Confidence 355555 5567789999999999876 555444444333333236789999954
No 305
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.92 E-value=4.6e-09 Score=110.25 Aligned_cols=110 Identities=14% Similarity=0.298 Sum_probs=53.9
Q ss_pred EEEEEeCCCccchHHHH------HHhcc--cCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 419 HVVVLDSPGHKDFVPNM------ISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~------i~g~~--~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.+.|+||||+.++.... +..+. ..=++++++|+..-.-...| .....-.+.....+++| .|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f---~s~~L~s~s~~~~~~lP-~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKF---VSSLLLSLSIMLRLELP-HVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHH---HHHHHHHHHHHHHHTSE-EEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhH---HHHHHHHHHHHhhCCCC-EEEeeeccC
Confidence 68999999988865444 33333 34578899998742100000 01111122233447899 689999999
Q ss_pred ccccch----------hh--------HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 491 AVQYSK----------DR--------FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~----------e~--------~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
++.... +. +..+..++..++...+. ...|+|+|+.+++|+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~~~~~~ 227 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDGEGMEE 227 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTTTTHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCChHHHHH
Confidence 986110 00 12223334444433332 23799999999999965
No 306
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.91 E-value=1e-08 Score=115.09 Aligned_cols=81 Identities=25% Similarity=0.254 Sum_probs=54.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe------
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD------ 414 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~------ 414 (768)
++|+|+|.+|+|||||+++|++....+. + -+++|++.......
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~-------------------~------------y~f~t~~p~~g~~~v~~~~~ 50 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIA-------------------N------------YPFTTIDPNVGVAYVRVECP 50 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccc-------------------C------------CCCcceeeeeeeeeeccCCc
Confidence 5899999999999999999995321110 0 03334332221110
Q ss_pred ------------------eCCeEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecC
Q 004202 415 ------------------SKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 452 (768)
Q Consensus 415 ------------------~~~~~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~ 452 (768)
.....+.|+||||..+ .....+..++.+|++++|||+.
T Consensus 51 ~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 51 CKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hhhhhhhhccccccccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 1224688999999432 4446677789999999999997
No 307
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.89 E-value=3.2e-09 Score=98.49 Aligned_cols=131 Identities=25% Similarity=0.305 Sum_probs=88.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
.++++||.+++|||||++.|-+..... -.|..+. ++. =
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly-----------------------------------kKTQAve-----~~d--~ 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY-----------------------------------KKTQAVE-----FND--K 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh-----------------------------------cccceee-----ccC--c
Confidence 379999999999999999998532111 0121111 111 1
Q ss_pred EEEeCCC----ccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 421 VVLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 421 ~lIDTPG----h~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
-.||||| |..+.+..+..+..+|++++|-.|+++. ..|. -.++ ..+.+++|=||+|+|+.+ .
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~--s~f~---------p~f~-~~~~k~vIgvVTK~DLae--d 105 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPE--SRFP---------PGFL-DIGVKKVIGVVTKADLAE--D 105 (148)
T ss_pred cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcc--ccCC---------cccc-cccccceEEEEecccccc--h
Confidence 2589999 7777788888889999999999999862 1121 1122 234445889999999985 3
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..+. ..+.+|...|- -++|.+|+.+..|+.+
T Consensus 106 ~dI~----~~~~~L~eaGa----~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 106 ADIS----LVKRWLREAGA----EPIFETSAVDNQGVEE 136 (148)
T ss_pred HhHH----HHHHHHHHcCC----cceEEEeccCcccHHH
Confidence 3333 34455555562 3779999999999976
No 308
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.89 E-value=9.6e-09 Score=105.35 Aligned_cols=96 Identities=10% Similarity=0.122 Sum_probs=57.3
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
+..++||+|.|.... ........+..+.|+|+..+. ..+ +......+.+ .++++||+|+.+...
T Consensus 102 ~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d--------~~~----~~~~~~~~~a-~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 102 DIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGD--------DKP----LKYPGMFKEA-DLIVINKADLAEAVG 165 (207)
T ss_pred CCCEEEEecCCCcCC---CcccccccCeEEEEEecCccc--------chh----hhhHhHHhhC-CEEEEEHHHccccch
Confidence 457899999992111 011123456677899998652 111 1112234455 589999999985322
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.....+.+.+..+ . +..+++++||++|.|+.+
T Consensus 166 ~~~~~~~~~l~~~----~---~~~~i~~~Sa~~g~gv~~ 197 (207)
T TIGR00073 166 FDVEKMKADAKKI----N---PEAEIILMSLKTGEGLDE 197 (207)
T ss_pred hhHHHHHHHHHHh----C---CCCCEEEEECCCCCCHHH
Confidence 2333344444332 2 346899999999999965
No 309
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.89 E-value=8.8e-09 Score=105.03 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=97.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE--EEEeeC
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--AYFDSK 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~--~~~~~~ 416 (768)
...+|+++|..|+|||+|+-++++.. +.++..+.+- +.-. ..++..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~-------------------------------f~~~y~ptie-d~y~k~~~v~~~ 49 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGR-------------------------------FVEDYDPTIE-DSYRKELTVDGE 49 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccc-------------------------------cccccCCCcc-ccceEEEEECCE
Confidence 35789999999999999999988421 1111111111 1111 122234
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cCCCeEEEEEecccccccc
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVvNKmDlv~~s 495 (768)
...+.|+||+|.++|.......+..+|+.++|.+.++. .+|+.+ .+.++.+...+. ..+| +|+|.||+|+....
T Consensus 50 ~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~---~SF~~~-~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R 124 (196)
T KOG0395|consen 50 VCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDR---SSFEEA-KQLREQILRVKGRDDVP-IILVGNKCDLERER 124 (196)
T ss_pred EEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCH---HHHHHH-HHHHHHHHHhhCcCCCC-EEEEEEcccchhcc
Confidence 45677999999999998888899999999999999874 344432 234444422222 3456 89999999997521
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.- ..++-..+...++ ++|+.+||+...|+.+
T Consensus 125 ~V----~~eeg~~la~~~~-----~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 125 QV----SEEEGKALARSWG-----CAFIETSAKLNYNVDE 155 (196)
T ss_pred cc----CHHHHHHHHHhcC-----CcEEEeeccCCcCHHH
Confidence 11 1222333333443 4689999999999976
No 310
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.89 E-value=4.7e-09 Score=115.86 Aligned_cols=149 Identities=21% Similarity=0.306 Sum_probs=82.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccC---eEEEEEEEEEee
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG---ITMTVAVAYFDS 415 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~G---iTid~~~~~~~~ 415 (768)
..++|||+|.+|+|||||+|+|.+- +.-++ + .-..| +|..... +...
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl-~~~d~---------------~-------------aA~tGv~etT~~~~~-Y~~p 83 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGL-GHEDE---------------G-------------AAPTGVVETTMEPTP-YPHP 83 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT---TTST---------------T-------------S--SSSHSCCTS-EE-EE-S
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC-CCCCc---------------C-------------cCCCCCCcCCCCCee-CCCC
Confidence 4689999999999999999999742 10000 0 00111 2333222 2222
Q ss_pred CCeEEEEEeCCCcc-------chHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec
Q 004202 416 KNYHVVVLDSPGHK-------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 488 (768)
Q Consensus 416 ~~~~i~lIDTPGh~-------~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK 488 (768)
+-.+++|||.||.. +|+..+ .+...|+.|+|.+..- .......+..+..+|.+ +.+|-||
T Consensus 84 ~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~rf----------~~ndv~La~~i~~~gK~-fyfVRTK 150 (376)
T PF05049_consen 84 KFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSERF----------TENDVQLAKEIQRMGKK-FYFVRTK 150 (376)
T ss_dssp S-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS------------HHHHHHHHHHHHTT-E-EEEEE--
T ss_pred CCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCCC----------chhhHHHHHHHHHcCCc-EEEEEec
Confidence 33469999999942 244433 4677898777766442 23444556667778988 8999999
Q ss_pred ccc-cc---------cch-hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCC
Q 004202 489 MDA-VQ---------YSK-DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN 532 (768)
Q Consensus 489 mDl-v~---------~s~-e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~g 532 (768)
+|. +. +++ ..++++++...+.|+..|... .++|.||+..-..
T Consensus 151 vD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~--P~VFLVS~~dl~~ 203 (376)
T PF05049_consen 151 VDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSE--PQVFLVSSFDLSK 203 (376)
T ss_dssp HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS----EEEB-TTTTTS
T ss_pred ccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCc--CceEEEeCCCccc
Confidence 996 11 122 235677777777777777643 4679999876443
No 311
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.88 E-value=5.4e-09 Score=100.24 Aligned_cols=153 Identities=18% Similarity=0.240 Sum_probs=98.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
-.++|+++|.-=+|||+|+-+.... .+.-..+..+.. ++.. .++ .++....
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~En--kFn~kHlsTlQA------------SF~~----------kk~-----n~ed~ra 62 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVEN--KFNCKHLSTLQA------------SFQN----------KKV-----NVEDCRA 62 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHh--hcchhhHHHHHH------------HHhh----------ccc-----cccccee
Confidence 4589999999999999999887732 111111111110 0000 011 1112345
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC-eEEEEEecccccccchh
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-QLIVAVNKMDAVQYSKD 497 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip-~iIVVvNKmDlv~~s~e 497 (768)
++.||||+|+++|-..---+.+.+|.+|||.|.++. .+|+.+..+.+| +-..+|-. .+++|-||+|+..
T Consensus 63 ~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr---dSFqKVKnWV~E---lr~mlGnei~l~IVGNKiDLEe---- 132 (218)
T KOG0088|consen 63 DLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR---DSFQKVKNWVLE---LRTMLGNEIELLIVGNKIDLEE---- 132 (218)
T ss_pred eeeeeeccchHhhhccCceEEeCCCceEEEEeccch---HHHHHHHHHHHH---HHHHhCCeeEEEEecCcccHHH----
Confidence 688999999999987777778999999999999973 456554444333 23344533 2788999999963
Q ss_pred hHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 498 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 498 ~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...-..++...+....| ..++.+||+.+.||.+
T Consensus 133 eR~Vt~qeAe~YAesvG-----A~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 133 ERQVTRQEAEAYAESVG-----ALYMETSAKDNVGISE 165 (218)
T ss_pred hhhhhHHHHHHHHHhhc-----hhheecccccccCHHH
Confidence 22333455555665555 3568999999999976
No 312
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=2.7e-08 Score=93.70 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=99.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--C
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK--N 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~--~ 417 (768)
.++-.|+|..|+|||.|+.+++... +|...+ ..+.+..+.+.++.. .
T Consensus 11 ifkyiiigdmgvgkscllhqftekk---------------------------fmadcp----htigvefgtriievsgqk 59 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK---------------------------FMADCP----HTIGVEFGTRIIEVSGQK 59 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH---------------------------HhhcCC----cccceecceeEEEecCcE
Confidence 4688999999999999999998321 111111 223444555555544 4
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHH----HHHHcCCC--eEEEEEecccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ----LIRSFGVD--QLIVAVNKMDA 491 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~----ll~~lgip--~iIVVvNKmDl 491 (768)
..+.||||+|+++|...+.++.++|-.++.|.|.+.. .|-.|+. -++.+--| -++++-||.|+
T Consensus 60 iklqiwdtagqerfravtrsyyrgaagalmvyditrr-----------stynhlsswl~dar~ltnpnt~i~lignkadl 128 (215)
T KOG0097|consen 60 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR-----------STYNHLSSWLTDARNLTNPNTVIFLIGNKADL 128 (215)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceeEEEEehhh-----------hhhhhHHHHHhhhhccCCCceEEEEecchhhh
Confidence 5678999999999999999999999999999999863 3444442 23334444 25678899998
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.....-.++ +.+++....| +.|+..||++|+|+.+
T Consensus 129 e~qrdv~ye----eak~faeeng-----l~fle~saktg~nved 163 (215)
T KOG0097|consen 129 ESQRDVTYE----EAKEFAEENG-----LMFLEASAKTGQNVED 163 (215)
T ss_pred hhcccCcHH----HHHHHHhhcC-----eEEEEecccccCcHHH
Confidence 753222233 3344444433 5789999999999976
No 313
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.86 E-value=2.5e-08 Score=107.58 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=71.3
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE
Q 004202 334 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 413 (768)
Q Consensus 334 ~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~ 413 (768)
.++....++|+++|.+|+|||||+|+|++......+. . .+.|........
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~-------------------------f-----~s~t~~~~~~~~ 81 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA-------------------------F-----QSEGLRPMMVSR 81 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC-------------------------C-----CCcceeEEEEEE
Confidence 3344567899999999999999999999543211110 0 111222212223
Q ss_pred eeCCeEEEEEeCCCccch--HHH-HHHhc------ccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-HcCC---C
Q 004202 414 DSKNYHVVVLDSPGHKDF--VPN-MISGA------TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGV---D 480 (768)
Q Consensus 414 ~~~~~~i~lIDTPGh~~f--~~~-~i~g~------~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~-~lgi---p 480 (768)
...+..+.||||||..+. ... .+..+ ..+|++|+|...+..- + ....+..+..+. .+|- .
T Consensus 82 ~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R----~---~~~DkqlLk~Iqe~FG~~iw~ 154 (313)
T TIGR00991 82 TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR----V---DTLDGQVIRAITDSFGKDIWR 154 (313)
T ss_pred EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc----C---CHHHHHHHHHHHHHhhhhhhc
Confidence 347889999999996653 111 11112 2599999995543211 1 112223333222 2332 3
Q ss_pred eEEEEEecccccc
Q 004202 481 QLIVAVNKMDAVQ 493 (768)
Q Consensus 481 ~iIVVvNKmDlv~ 493 (768)
++|||+|+.|...
T Consensus 155 ~~IVVfTh~d~~~ 167 (313)
T TIGR00991 155 KSLVVLTHAQFSP 167 (313)
T ss_pred cEEEEEECCccCC
Confidence 5899999999774
No 314
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.1e-08 Score=103.05 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=76.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
..|.++|..|+|||+|+-+|++.. -+..-+.+......+..+...+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs----------------------------------~~~TvtSiepn~a~~r~gs~~~ 84 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS----------------------------------HRGTVTSIEPNEATYRLGSENV 84 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC----------------------------------ccCeeeeeccceeeEeecCcce
Confidence 579999999999999999998421 0111123344444455566779
Q ss_pred EEEeCCCccchHHHHHHhcc---cCCEEEEEEecCCCccccccccchhhhHHHHH-HH-HH---cCCCeEEEEEeccccc
Q 004202 421 VVLDSPGHKDFVPNMISGAT---QSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LI-RS---FGVDQLIVAVNKMDAV 492 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~i~g~~---~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~-ll-~~---lgip~iIVVvNKmDlv 492 (768)
+|||.|||.+........+. .+-++|+|||+..- .... ....|.+. ++ .. .+.++++++.||.|+.
T Consensus 85 ~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f--~k~v----rdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 85 TLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATF--LKNV----RDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEeCCCcHHHHHHHHHHccccccceeEEEEEecccc--chhh----HHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 99999999999888877776 79999999998752 1111 12222221 11 11 2334599999999987
Q ss_pred cc
Q 004202 493 QY 494 (768)
Q Consensus 493 ~~ 494 (768)
-+
T Consensus 159 tA 160 (238)
T KOG0090|consen 159 TA 160 (238)
T ss_pred hc
Confidence 53
No 315
>PTZ00258 GTP-binding protein; Provisional
Probab=98.82 E-value=3.6e-08 Score=109.94 Aligned_cols=83 Identities=22% Similarity=0.133 Sum_probs=59.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
..++|+|||.+|+|||||+|+|++....+ ..-+++|++.....+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v-------------------------------~n~pftTi~p~~g~v~~~d~ 68 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPA-------------------------------ENFPFCTIDPNTARVNVPDE 68 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccc-------------------------------cCCCCCcccceEEEEecccc
Confidence 45789999999999999999998532111 111566766555554433
Q ss_pred ---------------CeEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecC
Q 004202 417 ---------------NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 452 (768)
Q Consensus 417 ---------------~~~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~ 452 (768)
..++.|+||||... +....+..++.+|++|+|||+.
T Consensus 69 r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 69 RFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred hhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23589999999432 4445677788999999999985
No 316
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.7e-08 Score=93.87 Aligned_cols=148 Identities=19% Similarity=0.182 Sum_probs=99.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
..+|.++|-.+|||||++-.|.-..... .--|+-.....+.+++..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~----------------------------------~ipTvGFnvetVtykN~k 62 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVT----------------------------------TIPTVGFNVETVTYKNVK 62 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcc----------------------------------cccccceeEEEEEeeeeE
Confidence 4789999999999999999887211000 001333333445568889
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHH-HHHH--H-cCCCeEEEEEecccccccc
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA-QLIR--S-FGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l-~ll~--~-lgip~iIVVvNKmDlv~~s 495 (768)
+++||..|+....+.+..+..+..++|+|+|+.... .+ ...++.+ .++. . ..++ ++|..||-|+.+.-
T Consensus 63 fNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~d---r~----eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 63 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD---RI----EEARNELHRIINDREMRDAI-ILILANKQDLPDAM 134 (180)
T ss_pred EeeeeccCchhhhHHHHhhccCCceEEEEEeccchh---hH----HHHHHHHHHHhCCHhhhcce-EEEEecCccccccc
Confidence 999999999999999999999999999999987631 11 1222222 1111 1 2344 78889999998642
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. +++..++.--......+-+.|.+|.+|+|+.+
T Consensus 135 --~p----qei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 135 --KP----QEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred --CH----HHHHHHhccccccCCccEeeccccccchhHHH
Confidence 22 34444443333445667789999999999866
No 317
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.78 E-value=2.4e-08 Score=94.31 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=99.4
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC-
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 416 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~- 416 (768)
.+.++|.++|--||||||++.+|...... ..-+..|. ....++..
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~------------------------------hltpT~GF----n~k~v~~~g 60 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR------------------------------HLTPTNGF----NTKKVEYDG 60 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh------------------------------hccccCCc----ceEEEeecC
Confidence 35689999999999999999999843110 01111222 22233333
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
.+++++||..|+.....-+..+....|.+|+|||.++.- .|+.......|.+.-.+...+| +.+..||-|++-.
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~k---rfeE~~~el~ELleeeKl~~vp-vlIfankQdllta-- 134 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEK---RFEEISEELVELLEEEKLAEVP-VLIFANKQDLLTA-- 134 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchH---hHHHHHHHHHHHhhhhhhhccc-eeehhhhhHHHhh--
Confidence 489999999999988888888889999999999977632 2321111222223333344567 7888999998852
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...+++...+. -.++....+.+-.+||++++|+..
T Consensus 135 a~~eeia~kln----l~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 135 AKVEEIALKLN----LAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred cchHHHHHhcc----hhhhhhceEEeeeCccccccCccC
Confidence 22233322222 223444556778899999999866
No 318
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.76 E-value=9.3e-08 Score=98.56 Aligned_cols=134 Identities=22% Similarity=0.321 Sum_probs=80.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|+++|.+|+||||++|.|++....-. .......|...........+..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~-----------------------------~~~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKS-----------------------------GSSAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS-------------------------------TTTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceee-----------------------------ccccCCcccccceeeeeecceEE
Confidence 5899999999999999999995321100 00112345555555557799999
Q ss_pred EEEeCCCccc-------hHHHHHH----hcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH-HcC---CCeEEEE
Q 004202 421 VVLDSPGHKD-------FVPNMIS----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFG---VDQLIVA 485 (768)
Q Consensus 421 ~lIDTPGh~~-------f~~~~i~----g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~-~lg---ip~iIVV 485 (768)
++|||||..+ ...++.. ...+++++|||+.+.. +....+..+..+. .+| .+++|||
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r---------~t~~~~~~l~~l~~~FG~~~~k~~ivv 122 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR---------FTEEDREVLELLQEIFGEEIWKHTIVV 122 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB----------SHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc---------chHHHHHHHHHHHHHccHHHHhHhhHH
Confidence 9999999433 2233332 2346899999999873 1233444443333 345 3478999
Q ss_pred EecccccccchhhHHHHH-----HHHhHHHhhcC
Q 004202 486 VNKMDAVQYSKDRFDSIK-----VQLGTFLRSCG 514 (768)
Q Consensus 486 vNKmDlv~~s~e~~~~i~-----~el~~~lk~~g 514 (768)
+|..|....+. +++.. ..+..+++.++
T Consensus 123 fT~~d~~~~~~--~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 123 FTHADELEDDS--LEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp EEEGGGGTTTT--HHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcccccccc--HHHHHhccCchhHhHHhhhcC
Confidence 99999775322 32222 34677777776
No 319
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=98.75 E-value=3.4e-08 Score=90.38 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=74.8
Q ss_pred CCCCceeeeEeEEeeC---------CCcEEEEEEEecCcccCCCEEEEccC-------C-----eeeEEEeeeecccccc
Q 004202 565 FSKPLLMPICDVLKSQ---------HGQVSACGKLEAGALRSGLKVLVLPS-------G-----EVGTVHSIERDSQSCS 623 (768)
Q Consensus 565 ~~~plr~~I~dv~~~~---------~G~V~v~G~V~sG~L~~Gd~v~i~P~-------~-----~~~~VksI~~~~~~v~ 623 (768)
.++|++|+|.++|.+. .|.| +.|+|.+|.|++||+|.|.|. + ...+|.+|+..+..++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgV-igGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~ 80 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGV-AGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQ 80 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeE-EEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCcccc
Confidence 4689999999999864 5788 899999999999999999976 2 2578999999999999
Q ss_pred eeccCCceEE---EecccccccccCCcccccC
Q 004202 624 VARAGDNIAV---SLQGIDVSRVMSGGVLCHP 652 (768)
Q Consensus 624 ~A~aGd~V~l---~L~gi~~~~i~rG~VL~~~ 652 (768)
+|.||..+++ -..++...+..+|+|++.|
T Consensus 81 ~a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 81 EAVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EEeCCCeEEEccccCccccccceeeEEEeecC
Confidence 9999999999 3446777788899998865
No 320
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.75 E-value=3.4e-08 Score=96.93 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCccc----hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004202 416 KNYHVVVLDSPGHKD----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~----f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
....++|+||||... ....+...+..+|++|+|+++.... .....+.+........+++|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~--------~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDL--------TESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTG--------GGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCccc--------chHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 446799999999533 1244556668899999999999863 22333333333344444589999995
No 321
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.74 E-value=1.4e-07 Score=102.38 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=58.7
Q ss_pred eCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 415 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 415 ~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
..++.++|+||||... .....+..+|.+++|.+...+. ...... ...+.++ .++|+||+|+...
T Consensus 124 ~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~----------el~~~~--~~l~~~~-~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 124 AAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGD----------DLQGIK--AGLMEIA-DIYVVNKADGEGA 187 (300)
T ss_pred hCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccH----------HHHHHH--HHHhhhc-cEEEEEcccccch
Confidence 3578999999999542 2233456689999887654321 111111 1124666 5899999999863
Q ss_pred chhhHHHHHHHH----hHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQL----GTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el----~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.. ...+...+ ..+.+.. .....+++++||++|+|+.+
T Consensus 188 ~~--~~~~~~~~~~~l~~l~~~~--~~~~~~v~~iSA~~g~Gi~~ 228 (300)
T TIGR00750 188 TN--VTIARLMLALALEEIRRRE--DGWRPPVLTTSAVEGRGIDE 228 (300)
T ss_pred hH--HHHHHHHHHHHHhhccccc--cCCCCCEEEEEccCCCCHHH
Confidence 21 11122222 2211110 01124689999999999976
No 322
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.73 E-value=3.1e-08 Score=101.28 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=58.0
Q ss_pred CeEEEEEeCCCc--cchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccccc
Q 004202 417 NYHVVVLDSPGH--KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 417 ~~~i~lIDTPGh--~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~ 494 (768)
+..++||+|.|. ...+. ...+|.+|+|+|+..+. .+.... ...+..- =++++||+|+.+.
T Consensus 91 ~~D~iiIEt~G~~l~~~~~-----~~l~~~~i~vvD~~~~~---------~~~~~~---~~qi~~a-d~~~~~k~d~~~~ 152 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS-----PELADLTIFVIDVAAGD---------KIPRKG---GPGITRS-DLLVINKIDLAPM 152 (199)
T ss_pred CCCEEEEECCCCCcccccc-----hhhhCcEEEEEEcchhh---------hhhhhh---HhHhhhc-cEEEEEhhhcccc
Confidence 467889999992 22111 12268899999998752 111111 1122222 1789999999853
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.....+.+.+.++.+ . ...+++++||++|+|+.+
T Consensus 153 ~~~~~~~~~~~~~~~----~---~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 153 VGADLGVMERDAKKM----R---GEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred ccccHHHHHHHHHHh----C---CCCCEEEEECCCCCCHHH
Confidence 234444445555544 2 346889999999999976
No 323
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=7.2e-09 Score=99.42 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=70.6
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH---cCCCeEEEEEeccccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~---lgip~iIVVvNKmDlv~~ 494 (768)
..+.||||+|+++|...+-...+.|=..||+.|.+.. .+|-. ++.-+..+.. -.-|.+|++-||.|+.+.
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~e---qSFLn----vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSE---QSFLN----VRNWLSQLQTHAYCENPDIVLCGNKADLEDQ 139 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccch---HHHHH----HHHHHHHHHHhhccCCCCEEEEcCccchhhh
Confidence 4578999999999999998888999999999998863 23321 1222222221 124568999999999752
Q ss_pred chhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. .--..+..++..++| +|+|.+||-+|.|+.+
T Consensus 140 --R--~Vs~~qa~~La~kyg-----lPYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 140 --R--VVSEDQAAALADKYG-----LPYFETSACTGTNVEK 171 (219)
T ss_pred --h--hhhHHHHHHHHHHhC-----CCeeeeccccCcCHHH
Confidence 1 112234445555555 5899999999999976
No 324
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.69 E-value=2.6e-07 Score=96.96 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=49.1
Q ss_pred CCeEEEEEeCCCccc------------hHHH-HHHhccc-CCEEEEEEecCCCccccccccchhhh-HHHHHHHHHcCCC
Q 004202 416 KNYHVVVLDSPGHKD------------FVPN-MISGATQ-SDAAILVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVD 480 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~------------f~~~-~i~g~~~-aD~aILVVDA~~g~~e~~~~~~~~qt-~e~l~ll~~lgip 480 (768)
.-..++|+||||... .+.. +..++.. .+++++|+||+.+. ..+. .+.+..+...+.+
T Consensus 123 ~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~--------~~~d~l~ia~~ld~~~~r 194 (240)
T smart00053 123 HVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDL--------ANSDALKLAKEVDPQGER 194 (240)
T ss_pred CCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC--------CchhHHHHHHHHHHcCCc
Confidence 346899999999642 1222 3445553 56999999998763 2333 4666667777777
Q ss_pred eEEEEEecccccccc
Q 004202 481 QLIVAVNKMDAVQYS 495 (768)
Q Consensus 481 ~iIVVvNKmDlv~~s 495 (768)
+|+|+||+|..+..
T Consensus 195 -ti~ViTK~D~~~~~ 208 (240)
T smart00053 195 -TIGVITKLDLMDEG 208 (240)
T ss_pred -EEEEEECCCCCCcc
Confidence 89999999998643
No 325
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.66 E-value=1.2e-07 Score=80.43 Aligned_cols=79 Identities=35% Similarity=0.513 Sum_probs=70.0
Q ss_pred ceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEcc--CCeeeEEEeeeecccccceeccCCceEEEecccccccccC
Q 004202 569 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLP--SGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMS 645 (768)
Q Consensus 569 lr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P--~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~r 645 (768)
++++|.+++..+ .|.+ ++|+|.+|+|++|+.+.+.| .....+|++|+....+++.+.||+.+++.+...+ +++.
T Consensus 1 ~~~~v~~~~~~~~~g~v-~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~--~~~~ 77 (83)
T cd01342 1 LRALVFKVFKDKGRGTV-ATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD--DIKI 77 (83)
T ss_pred CeeEEEEEEEeCCceEE-EEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc--ccCC
Confidence 467889999988 7887 89999999999999999999 7778999999999999999999999999876443 6889
Q ss_pred Ccccc
Q 004202 646 GGVLC 650 (768)
Q Consensus 646 G~VL~ 650 (768)
|++|+
T Consensus 78 g~~l~ 82 (83)
T cd01342 78 GDTLT 82 (83)
T ss_pred CCEec
Confidence 99886
No 326
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.64 E-value=1.1e-08 Score=95.40 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=75.1
Q ss_pred eeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004202 414 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 414 ~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
......+.+|||+|+++|...+..+.+.||+++|+.|.... ++|+..+.+..+.-..++. .+. +.++-||+|+..
T Consensus 43 ~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiank---asfdn~~~wlsei~ey~k~-~v~-l~llgnk~d~a~ 117 (192)
T KOG0083|consen 43 DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANK---ASFDNCQAWLSEIHEYAKE-AVA-LMLLGNKCDLAH 117 (192)
T ss_pred CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccc---hhHHHHHHHHHHHHHHHHh-hHh-Hhhhccccccch
Confidence 33456789999999999999999999999999999998763 5666655454444333332 333 678899999963
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
++.- -..+-..+.+..+ +||+.+||++|-|++.
T Consensus 118 ---er~v-~~ddg~kla~~y~-----ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 118 ---ERAV-KRDDGEKLAEAYG-----IPFMETSAKTGFNVDL 150 (192)
T ss_pred ---hhcc-ccchHHHHHHHHC-----CCceeccccccccHhH
Confidence 2210 0112223333333 6899999999999964
No 327
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2e-07 Score=90.55 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=85.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+.-++.++|--|||||||+..|-.+.-. ..--|.+.+...+...+-
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~----------------------------------qhvPTlHPTSE~l~Ig~m 64 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG----------------------------------QHVPTLHPTSEELSIGGM 64 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc----------------------------------ccCCCcCCChHHheecCc
Confidence 4568999999999999999999732100 012255556666777888
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH----HcCCCeEEEEEeccccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~----~lgip~iIVVvNKmDlv~~ 494 (768)
.++-+|..||.....-+..++..+|.++++|||.+.. .| ...++++..+. ...+| +++..||+|....
T Consensus 65 ~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~e---r~----~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 65 TFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQE---RF----AESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred eEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHH---Hh----HHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 9999999999999999999999999999999998743 11 23344443332 24677 7889999999864
Q ss_pred c
Q 004202 495 S 495 (768)
Q Consensus 495 s 495 (768)
.
T Consensus 137 ~ 137 (193)
T KOG0077|consen 137 A 137 (193)
T ss_pred c
Confidence 3
No 328
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.62 E-value=5e-07 Score=99.96 Aligned_cols=135 Identities=19% Similarity=0.275 Sum_probs=81.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccC---eEEEEEE---EE
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG---ITMTVAV---AY 412 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~G---iTid~~~---~~ 412 (768)
..+-|+++|++++|||||+++|........-. ..+.+ ....|.... ...| +|.+..+ ..
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~--~~~~k------------~Ra~DELpq-s~~GktItTTePkfvP~kA 80 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNIS--NEYDK------------ERAQDELPQ-SAAGKTIMTTEPKFVPNEA 80 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhcccccc--chhHH------------hHHHhccCc-CCCCCCcccCCCccccCcc
Confidence 35789999999999999999999653221100 00000 111222221 1256 5555555 33
Q ss_pred Eee-----CCeEEEEEeCCCccc-------------------------hHHH----HHHhcc-cCCEEEEEE-ecCCCcc
Q 004202 413 FDS-----KNYHVVVLDSPGHKD-------------------------FVPN----MISGAT-QSDAAILVI-DASVGSF 456 (768)
Q Consensus 413 ~~~-----~~~~i~lIDTPGh~~-------------------------f~~~----~i~g~~-~aD~aILVV-DA~~g~~ 456 (768)
++. -...+.|+||+|..+ |... +..-+. .+|++|+|. |++-+..
T Consensus 81 vEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI 160 (492)
T TIGR02836 81 VEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDI 160 (492)
T ss_pred eEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccc
Confidence 332 236899999999332 1111 233345 699999999 8862211
Q ss_pred ccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004202 457 EVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 457 e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
. -+.....-.+.+..++..++| +|+|+||.|-
T Consensus 161 ~--Re~y~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 161 P--REDYVEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred c--cccchHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 1 011224556778888999999 8999999993
No 329
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.56 E-value=2.6e-07 Score=96.74 Aligned_cols=157 Identities=20% Similarity=0.218 Sum_probs=101.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
...+.++++|..|+|||+|+|-|+....... ......|-|..+.... -+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~----------------------------t~k~K~g~Tq~in~f~---v~ 182 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIAD----------------------------TSKSKNGKTQAINHFH---VG 182 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhh----------------------------hcCCCCccceeeeeee---cc
Confidence 3568999999999999999999985322110 0011456666554443 35
Q ss_pred eEEEEEeCCCc----------cc---hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEE
Q 004202 418 YHVVVLDSPGH----------KD---FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 484 (768)
Q Consensus 418 ~~i~lIDTPGh----------~~---f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIV 484 (768)
..+.++|.||. .+ |.+.....-.+-=-+.|+|||+.++ +......+.++...++| +.+
T Consensus 183 ~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i--------~~~D~~~i~~~ge~~VP-~t~ 253 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI--------QPTDNPEIAWLGENNVP-MTS 253 (320)
T ss_pred ceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC--------CCCChHHHHHHhhcCCC-eEE
Confidence 68999999991 12 3333333334455678889999874 56778888999999999 889
Q ss_pred EEecccccccch----hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccC
Q 004202 485 AVNKMDAVQYSK----DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 536 (768)
Q Consensus 485 VvNKmDlv~~s~----e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~ 536 (768)
|+||||....-. .....++..+..+.. ++-....||+.+|+.++.|++.+
T Consensus 254 vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~--~~f~~~~Pw~~~Ssvt~~Grd~L 307 (320)
T KOG2486|consen 254 VFTKCDKQKKVKRTGKKPGLNIKINFQGLIR--GVFLVDLPWIYVSSVTSLGRDLL 307 (320)
T ss_pred eeehhhhhhhccccccCccccceeehhhccc--cceeccCCceeeecccccCceee
Confidence 999999864211 001111221222221 11123568999999999999763
No 330
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.54 E-value=1.6e-07 Score=80.15 Aligned_cols=68 Identities=32% Similarity=0.413 Sum_probs=60.7
Q ss_pred CcEEEEEEEecCcccCCCEEEEccC--Cee---eEEEeeeecccccceeccCCceEEEeccccccc-ccCCcccc
Q 004202 582 GQVSACGKLEAGALRSGLKVLVLPS--GEV---GTVHSIERDSQSCSVARAGDNIAVSLQGIDVSR-VMSGGVLC 650 (768)
Q Consensus 582 G~V~v~G~V~sG~L~~Gd~v~i~P~--~~~---~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~-i~rG~VL~ 650 (768)
|++ ++|||++|+|++||+|+++|. +.. .+|++|+.++.....+.+|+.+++.+.....++ +++||+|+
T Consensus 1 G~v-~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRV-ATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEE-EEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEE-EEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 566 899999999999999999773 344 999999999999999999999999998888888 89999986
No 331
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.54 E-value=5.2e-07 Score=94.57 Aligned_cols=171 Identities=20% Similarity=0.254 Sum_probs=87.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchh-hhhHHHHHHhhhCCCccchhhccccc---hhhhccCeEEEEEEEE--
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQK-QMHKYEKEAKLQGKGSFAYAWALDES---AEERERGITMTVAVAY-- 412 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~-~~~~~e~~a~~~gk~s~~~a~~~d~~---~~Ere~GiTid~~~~~-- 412 (768)
+..+|+|-|.+|+|||||+++|....-.-..+ .+-.....+...| -+.+.|+. ....++++-+......
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG-----GAlLGDRiRM~~~~~d~~vfIRS~atRG~ 102 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG-----GALLGDRIRMQELSRDPGVFIRSMATRGS 102 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC--------SS--GGGCHHHHTSTTEEEEEE---SS
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC-----CcccccHHHhcCcCCCCCEEEeecCcCCC
Confidence 45799999999999999999998542110000 0000001111111 12333332 2234556555432221
Q ss_pred --------------EeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC
Q 004202 413 --------------FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG 478 (768)
Q Consensus 413 --------------~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg 478 (768)
++.-++.++||.|.|--+- -..-+..+|.+++|+-...|. .++ ..-.-.+.+
T Consensus 103 lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD---~iQ---~~KaGimEi----- 168 (266)
T PF03308_consen 103 LGGLSRATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGD---EIQ---AIKAGIMEI----- 168 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCC---CCC---TB-TTHHHH-----
T ss_pred CCCccHhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCcc---HHH---HHhhhhhhh-----
Confidence 1224689999999994331 122356699999999887763 122 222223332
Q ss_pred CCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCC--CCCCCcEEEeecccCCCccc
Q 004202 479 VDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF--KDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 479 ip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~--~~~~i~~IpVSA~tG~gI~e 535 (768)
.. |+||||.|+... +....++...+.-..- .....|++.+||.+|.|+.+
T Consensus 169 -aD-i~vVNKaD~~gA-----~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~e 220 (266)
T PF03308_consen 169 -AD-IFVVNKADRPGA-----DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDE 220 (266)
T ss_dssp --S-EEEEE--SHHHH-----HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHH
T ss_pred -cc-EEEEeCCChHHH-----HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHH
Confidence 22 789999997642 2234455555432211 11236899999999999976
No 332
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.53 E-value=2.6e-07 Score=99.09 Aligned_cols=97 Identities=11% Similarity=0.166 Sum_probs=55.3
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
....+.||++.|.-..-... --+.+.-+.|++...|. .+... .-..+... -++|+||+|++.+.
T Consensus 183 ~~~d~liIEnvGnLvcPa~f---dlge~~~v~vlsV~eg~---------dkplK---yp~~f~~A-DIVVLNKiDLl~~~ 246 (290)
T PRK10463 183 DDNGILFIENVGNLVCPASF---DLGEKHKVAVLSVTEGE---------DKPLK---YPHMFAAA-SLMLLNKVDLLPYL 246 (290)
T ss_pred cCCcEEEEECCCCccCCCcc---chhhceeEEEEECcccc---------ccchh---ccchhhcC-cEEEEEhHHcCccc
Confidence 34578899998841110000 11134456778877652 01111 11222334 37899999998643
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...++.+.+.++.+. +..+++++||++|+|+.+
T Consensus 247 ~~dle~~~~~lr~ln-------p~a~I~~vSA~tGeGld~ 279 (290)
T PRK10463 247 NFDVEKCIACAREVN-------PEIEIILISATSGEGMDQ 279 (290)
T ss_pred HHHHHHHHHHHHhhC-------CCCcEEEEECCCCCCHHH
Confidence 334444555554432 346899999999999965
No 333
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.49 E-value=2.8e-07 Score=101.87 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=58.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC---
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--- 417 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~--- 417 (768)
++|+|||.+|+|||||+|+|++....+ ..-+++|++.....+...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v-------------------------------~nypftTi~p~~G~~~v~d~r~ 51 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA-------------------------------ANYPFCTIEPNVGVVPVPDPRL 51 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee-------------------------------cccccccccceEEEEEeccccc
Confidence 689999999999999999999532111 1115666665444433322
Q ss_pred --------------eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCC
Q 004202 418 --------------YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 453 (768)
Q Consensus 418 --------------~~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~ 453 (768)
..+.|+|+||... +....+..++.+|++|+|||+..
T Consensus 52 ~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 52 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 2589999999432 34456777889999999999963
No 334
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.49 E-value=2.1e-07 Score=99.55 Aligned_cols=80 Identities=21% Similarity=0.156 Sum_probs=56.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC-----
Q 004202 343 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN----- 417 (768)
Q Consensus 343 VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~----- 417 (768)
|+|||.+|+|||||+|+|++....+ ..-+++|++.....+...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~-------------------------------~n~pftTi~p~~g~v~v~d~r~~~ 49 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA-------------------------------ANYPFCTIEPNVGIVPVPDERLDK 49 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc-------------------------------ccccccchhceeeeEEeccchhhh
Confidence 5899999999999999999532211 1115566665554444333
Q ss_pred ------------eEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCC
Q 004202 418 ------------YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 453 (768)
Q Consensus 418 ------------~~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~ 453 (768)
..+.|+|+||..+ +....+..++.+|++|+|||+..
T Consensus 50 l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 50 LAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 2599999999432 44456777889999999999853
No 335
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=1.4e-07 Score=89.55 Aligned_cols=151 Identities=23% Similarity=0.250 Sum_probs=95.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
+..+|.++|--|+||+|++=+|-- +.++. .--|+......+..++-
T Consensus 17 ~e~rililgldGaGkttIlyrlqv--gevvt--------------------------------tkPtigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQV--GEVVT--------------------------------TKPTIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEccc--Ccccc--------------------------------cCCCCCcCccccccccc
Confidence 346899999999999998766641 11110 01133333444555788
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHH--HcCCCeEEEEEecccccccch
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~--~lgip~iIVVvNKmDlv~~s~ 496 (768)
.+.+||..|+....+-+.-+....|.+|+|||.++-. .+.. --.+...++. .+.--.++|+.||+|.... .
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~d---ris~---a~~el~~mL~E~eLq~a~llv~anKqD~~~~-~ 135 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRD---RISI---AGVELYSMLQEEELQHAKLLVFANKQDYSGA-L 135 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchh---hhhh---hHHHHHHHhccHhhcCceEEEEeccccchhh-h
Confidence 8999999999988888889999999999999988742 1111 1122222222 1222348899999997642 1
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...++...|.--.++...+.+|..||.+|+|++.
T Consensus 136 -----t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 136 -----TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred -----hHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 1222222221111223447889999999999976
No 336
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.47 E-value=1.5e-06 Score=92.33 Aligned_cols=177 Identities=16% Similarity=0.130 Sum_probs=89.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchh---hhccCeEEEEEEE---
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAE---ERERGITMTVAVA--- 411 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~---Ere~GiTid~~~~--- 411 (768)
-+..+|+|-|.+|+|||||+.+|...+-. ... +.--.+.....+...-+.+.|+..- ...+|+-+.....
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~--~G~--rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~ 124 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRE--RGH--RVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGT 124 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHH--CCc--EEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCcc
Confidence 35679999999999999999999855300 000 0000000000000011122222111 1123332221100
Q ss_pred -------------EEeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC
Q 004202 412 -------------YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG 478 (768)
Q Consensus 412 -------------~~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg 478 (768)
.++--++.++||.|.|--+-- ..-+..+|..++|.=..-|. .-|.. ..-.|.
T Consensus 125 lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD--------~~Q~i----K~GimE 189 (323)
T COG1703 125 LGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGD--------DLQGI----KAGIME 189 (323)
T ss_pred chhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCc--------HHHHH----Hhhhhh
Confidence 112246899999999943311 12234589999888766552 11221 111122
Q ss_pred CCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 479 VDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 479 ip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+-. |+||||+|+.+. +..+.++...+...-..+.-+....+++.+||.+|+|+.+
T Consensus 190 iaD-i~vINKaD~~~A-~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~ 244 (323)
T COG1703 190 IAD-IIVINKADRKGA-EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDE 244 (323)
T ss_pred hhh-eeeEeccChhhH-HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHH
Confidence 222 789999997652 3334444444443321111222346889999999999976
No 337
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=7.9e-08 Score=104.22 Aligned_cols=186 Identities=22% Similarity=0.294 Sum_probs=111.6
Q ss_pred CccccchhhhccccccccccCCCCCccccccccccccCcccccCCCCc----CCCCCceEEEEEeCCCCCHHHHHHHHHH
Q 004202 287 SSHTGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKK----GDRMTQLNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 287 ~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
.....++.+++++...-...+. +.+.++-+.+..++++..+..... ....++-.|.+||-.|+||||.+..|.+
T Consensus 46 ~~lV~~l~~nir~~i~~~~~~~--G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 46 PRLVKELRENIRKIINLEKLAS--GVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred HHHHHHHHHHHHHHhchhhhcc--ccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHH
Confidence 3344456777666555554433 455555555666666555443221 1223456789999999999999999987
Q ss_pred hh------------CccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEEEEeCCC-c-
Q 004202 363 LL------------GRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDSPG-H- 428 (768)
Q Consensus 363 ~~------------~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~lIDTPG-h- 428 (768)
.. .+.+...+.++++.+...+-+.|. .-.|.++-.....+...|..+++.++|+||.| |
T Consensus 124 y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg-------syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~ 196 (483)
T KOG0780|consen 124 YYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG-------SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHK 196 (483)
T ss_pred HHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe-------cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchh
Confidence 63 334555666776666666554441 00011111111112234555789999999999 2
Q ss_pred --cchHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004202 429 --KDFVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 429 --~~f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
..++.+| +..+..+|.+|+|+||+.| |..+....+...-+.---|++||+|-.
T Consensus 197 qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG-----------Qaae~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 197 QEASLFEEMKQVSKAIKPDEIIFVMDASIG-----------QAAEAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEEEecccc-----------HhHHHHHHHHHHhhccceEEEEecccC
Confidence 2256666 4456679999999999976 555554444333333235789999954
No 338
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.44 E-value=2.7e-06 Score=99.01 Aligned_cols=118 Identities=18% Similarity=0.133 Sum_probs=70.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|.+|+|||||+|.|++...... ....+++|. .........+.
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~v-----------------------------ss~~~~TTr-~~ei~~~idG~ 166 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFST-----------------------------DAFGMGTTS-VQEIEGLVQGV 166 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccc-----------------------------cCCCCCceE-EEEEEEEECCc
Confidence 457999999999999999999995421110 011134443 33333445788
Q ss_pred EEEEEeCCCccch------HHHH----HHhcc--cCCEEEEEEecCCCccccccccchhhhHHHHHHH-HHcC---CCeE
Q 004202 419 HVVVLDSPGHKDF------VPNM----ISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFG---VDQL 482 (768)
Q Consensus 419 ~i~lIDTPGh~~f------~~~~----i~g~~--~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll-~~lg---ip~i 482 (768)
.+.||||||..+. ...+ ...+. .+|++|+|+....... .......+..+ ..+| .+++
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~-------D~eD~~aLr~Iq~lFG~~Iwk~t 239 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR-------DSNDLPLLRTITDVLGPSIWFNA 239 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------cHHHHHHHHHHHHHhCHHhHcCE
Confidence 9999999996542 1122 22222 4899998886542110 00111222222 2234 3478
Q ss_pred EEEEecccccc
Q 004202 483 IVAVNKMDAVQ 493 (768)
Q Consensus 483 IVVvNKmDlv~ 493 (768)
|||+|..|.+.
T Consensus 240 IVVFThgD~lp 250 (763)
T TIGR00993 240 IVTLTHAASAP 250 (763)
T ss_pred EEEEeCCccCC
Confidence 99999999885
No 339
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.44 E-value=9.8e-07 Score=88.59 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=56.7
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCC-EEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD-~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
..+.||.+.| .+.... + .-..| +-|+|||.++|.-. + .+-+-.+ .. - =++||||+|++.+-.
T Consensus 97 ~Dll~iEs~G--NL~~~~-s-p~L~d~~~v~VidvteGe~~-----P---~K~gP~i---~~-a-DllVInK~DLa~~v~ 159 (202)
T COG0378 97 LDLLFIESVG--NLVCPF-S-PDLGDHLRVVVIDVTEGEDI-----P---RKGGPGI---FK-A-DLLVINKTDLAPYVG 159 (202)
T ss_pred CCEEEEecCc--ceeccc-C-cchhhceEEEEEECCCCCCC-----c---ccCCCce---eE-e-eEEEEehHHhHHHhC
Confidence 4789999999 211111 1 11244 89999999998410 0 0000000 00 1 278999999987544
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
..++.+.+..+++- +..+||.+|+++|+|+.+
T Consensus 160 ~dlevm~~da~~~n-------p~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 160 ADLEVMARDAKEVN-------PEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred ccHHHHHHHHHHhC-------CCCCEEEEeCCCCcCHHH
Confidence 43444445444431 567999999999999965
No 340
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.43 E-value=5.8e-07 Score=91.71 Aligned_cols=150 Identities=20% Similarity=0.242 Sum_probs=99.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee-CCeE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYH 419 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-~~~~ 419 (768)
.+|.++|..|||||++=..+.....+ .+-+..|-||++.+..... ++-.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a------------------------------~D~~rlg~tidveHsh~RflGnl~ 54 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIA------------------------------RDTRRLGATIDVEHSHVRFLGNLV 54 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhh------------------------------hhhhccCCcceeeehhhhhhhhhe
Confidence 57999999999999997776632111 1223477899988877654 4477
Q ss_pred EEEEeCCCccchHHHHHH-----hcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC-CCeEEEEEecccccc
Q 004202 420 VVVLDSPGHKDFVPNMIS-----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQ 493 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~-----g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg-ip~iIVVvNKmDlv~ 493 (768)
+.+||..|++.|+++..+ ..+..+++|+|.|+...++++.|+. ....+..+.... .-++++.+.|||++.
T Consensus 55 LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~----yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 55 LNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHY----YQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHH----HHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 889999999999988866 3566899999999998877766642 333333333322 225889999999986
Q ss_pred cc--hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeeccc
Q 004202 494 YS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 529 (768)
Q Consensus 494 ~s--~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~t 529 (768)
.+ +..|+.-.+.+..+-+.++ ...+|+|.+.
T Consensus 131 ~d~r~~if~~r~~~l~~~s~~~~-----~~~f~TsiwD 163 (295)
T KOG3886|consen 131 EDARELIFQRRKEDLRRLSRPLE-----CKCFPTSIWD 163 (295)
T ss_pred cchHHHHHHHHHHHHHHhccccc-----ccccccchhh
Confidence 43 2334444444444332222 3456666543
No 341
>PRK14974 cell division protein FtsY; Provisional
Probab=98.42 E-value=3.2e-06 Score=93.00 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=83.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCc-------c-----chhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEE
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGR-------I-----TQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM 406 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~-------i-----~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTi 406 (768)
++..|+++|.+|+||||++..|...+.. + +.....++...+...|-..+....-.+-... +
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v-------~ 211 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAV-------A 211 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHH-------H
Confidence 4678999999999999998888754210 1 1122233333333333211100000000000 0
Q ss_pred EEEEEEEeeCCeEEEEEeCCCccc----hHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC
Q 004202 407 TVAVAYFDSKNYHVVVLDSPGHKD----FVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 480 (768)
Q Consensus 407 d~~~~~~~~~~~~i~lIDTPGh~~----f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip 480 (768)
..+.......++.++||||||... ++.++ +.....+|..+||+||..|. .............++.
T Consensus 212 ~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---------d~~~~a~~f~~~~~~~ 282 (336)
T PRK14974 212 YDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---------DAVEQAREFNEAVGID 282 (336)
T ss_pred HHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---------hHHHHHHHHHhcCCCC
Confidence 000000012456799999999543 33333 12234699999999998651 1111111222345665
Q ss_pred eEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 481 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 481 ~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
-+++||+|.... +-.+...... . ..|+.+++ +|+++.+
T Consensus 283 --giIlTKlD~~~~----~G~~ls~~~~----~-----~~Pi~~i~--~Gq~v~D 320 (336)
T PRK14974 283 --GVILTKVDADAK----GGAALSIAYV----I-----GKPILFLG--VGQGYDD 320 (336)
T ss_pred --EEEEeeecCCCC----ccHHHHHHHH----H-----CcCEEEEe--CCCChhh
Confidence 578999998642 1111111111 1 35667776 7999855
No 342
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.42 E-value=8.3e-08 Score=93.95 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=94.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEE--EEeeC
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA--YFDSK 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~--~~~~~ 416 (768)
..++++|+|.-++||||++.+... |....+. + ..|-++...+ .+..+
T Consensus 19 ~aiK~vivGng~VGKssmiqryCk--gifTkdy------------k-----------------ktIgvdflerqi~v~~E 67 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCK--GIFTKDY------------K-----------------KTIGVDFLERQIKVLIE 67 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhc--ccccccc------------c-----------------cccchhhhhHHHHhhHH
Confidence 568999999999999999999982 2221110 0 0011111111 11224
Q ss_pred CeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccch
Q 004202 417 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 496 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~ 496 (768)
...+.+|||+|+++|-.-+..+.++|.+.+||...++- .+|+....+-.+. ....-.|| .++|-||+|+++.+.
T Consensus 68 dvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr---~SFea~~~w~~kv--~~e~~~IP-tV~vqNKIDlveds~ 141 (246)
T KOG4252|consen 68 DVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDR---YSFEATLEWYNKV--QKETERIP-TVFVQNKIDLVEDSQ 141 (246)
T ss_pred HHHHHHHHhccchhHHHHHHHHhccccceEEEEecccH---HHHHHHHHHHHHH--HHHhccCC-eEEeeccchhhHhhh
Confidence 55678999999999999888999999999999998863 2333221122221 12234678 789999999997443
Q ss_pred hhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 497 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 497 e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
-.-.++ ..+.+.+. ..++-+|++...|+..
T Consensus 142 ~~~~ev----E~lak~l~-----~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 142 MDKGEV----EGLAKKLH-----KRLYRTSVKEDFNVMH 171 (246)
T ss_pred cchHHH----HHHHHHhh-----hhhhhhhhhhhhhhHH
Confidence 222222 22222222 3457889999999854
No 343
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.41 E-value=4.7e-07 Score=101.00 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=95.9
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 416 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~ 416 (768)
......+.+||.+|+|||++++.++.....+.+ | .-+|..+-...++..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqp-------------------Y------------aFTTksL~vGH~dyk 213 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQP-------------------Y------------AFTTKLLLVGHLDYK 213 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCC-------------------c------------ccccchhhhhhhhhh
Confidence 445678999999999999999998843222211 1 123444444555666
Q ss_pred CeEEEEEeCCCccc------hHHHH--HHhccc-CCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEe
Q 004202 417 NYHVVVLDSPGHKD------FVPNM--ISGATQ-SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 487 (768)
Q Consensus 417 ~~~i~lIDTPGh~~------f~~~~--i~g~~~-aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvN 487 (768)
-.++.++||||.-+ -+-+| +.+++. --+|++++|.+.- .|+. +..|..-.-.+--.+.-+.+|+|+|
T Consensus 214 YlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~---CGyS-va~QvkLfhsIKpLFaNK~~IlvlN 289 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEM---CGYS-VAAQVKLYHSIKPLFANKVTILVLN 289 (620)
T ss_pred eeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhh---hCCC-HHHHHHHHHHhHHHhcCCceEEEee
Confidence 67899999999333 12223 233322 3478889998863 2333 2233322222222222233899999
Q ss_pred cccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCC
Q 004202 488 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 537 (768)
Q Consensus 488 KmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~ 537 (768)
|+|+.. .+.+.+-.+++.+.+..- .+++++.+|..+.+|+.+..
T Consensus 290 K~D~m~--~edL~~~~~~ll~~~~~~----~~v~v~~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 290 KIDAMR--PEDLDQKNQELLQTIIDD----GNVKVVQTSCVQEEGVMDVR 333 (620)
T ss_pred cccccC--ccccCHHHHHHHHHHHhc----cCceEEEecccchhceeeHH
Confidence 999875 333333344444444333 34789999999999997643
No 344
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.39 E-value=2.6e-07 Score=94.22 Aligned_cols=135 Identities=22% Similarity=0.329 Sum_probs=79.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC------------ccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLG------------RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV 408 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~------------~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~ 408 (768)
..|++||++|+||||.+..|..... ..+-..+++++..+...+-+.+......+....-+ .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~-------~ 74 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAR-------E 74 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHH-------H
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHH-------H
Confidence 4689999999999999999987632 22334556666666666654332111000000000 0
Q ss_pred EEEEEeeCCeEEEEEeCCCccchH----HHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeE
Q 004202 409 AVAYFDSKNYHVVVLDSPGHKDFV----PNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 482 (768)
Q Consensus 409 ~~~~~~~~~~~i~lIDTPGh~~f~----~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~i 482 (768)
....+..+++.++||||||...+- .++ +.....++-++||++|+.+ .............+++..
T Consensus 75 ~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~---------~~~~~~~~~~~~~~~~~~- 144 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG---------QEDLEQALAFYEAFGIDG- 144 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG---------GHHHHHHHHHHHHSSTCE-
T ss_pred HHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC---------hHHHHHHHHHhhcccCce-
Confidence 000111245789999999954432 222 2223368999999999975 233444555556677774
Q ss_pred EEEEecccccc
Q 004202 483 IVAVNKMDAVQ 493 (768)
Q Consensus 483 IVVvNKmDlv~ 493 (768)
+++||+|...
T Consensus 145 -lIlTKlDet~ 154 (196)
T PF00448_consen 145 -LILTKLDETA 154 (196)
T ss_dssp -EEEESTTSSS
T ss_pred -EEEEeecCCC
Confidence 5699999864
No 345
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.8e-06 Score=99.55 Aligned_cols=100 Identities=22% Similarity=0.187 Sum_probs=64.7
Q ss_pred EEEEEeCCCc---cchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccc
Q 004202 419 HVVVLDSPGH---KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 495 (768)
Q Consensus 419 ~i~lIDTPGh---~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s 495 (768)
.+.++|.||. ..+........-.+|+.|||+.|..- ..++..++...-.-+.|+++|+.||+|....-
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt---------lt~sek~Ff~~vs~~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT---------LTLSEKQFFHKVSEEKPNIFILNNKWDASASE 277 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH---------hHHHHHHHHHHhhccCCcEEEEechhhhhccc
Confidence 6899999993 33444445556679999999999764 23444454444445678899999999987543
Q ss_pred hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecc
Q 004202 496 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL 528 (768)
Q Consensus 496 ~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~ 528 (768)
++-.+.++.++.. |+-..+....-.++.|||+
T Consensus 278 ~ec~e~V~~Qi~e-L~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 278 PECKEDVLKQIHE-LSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHHHHHHHHHh-cCcccHhhhcCeeEEEecc
Confidence 4445566666542 3222333333457888965
No 346
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.38 E-value=5.6e-06 Score=89.15 Aligned_cols=143 Identities=15% Similarity=0.287 Sum_probs=79.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.++|.++|..|.|||||+|.|............ ........+...+......+..++
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~---------------------~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSI---------------------PPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccc---------------------cccccccccccceeeEEEEeccCCcc
Confidence 479999999999999999999953221110000 000111223344444444444333
Q ss_pred eEEEEEeCCCccc-------------hHHHH----HH-h--c-------ccCCEEEEEEecCCCccccccccchhhhHHH
Q 004202 418 YHVVVLDSPGHKD-------------FVPNM----IS-G--A-------TQSDAAILVIDASVGSFEVGMNTAKGLTREH 470 (768)
Q Consensus 418 ~~i~lIDTPGh~~-------------f~~~~----i~-g--~-------~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~ 470 (768)
..++|+||||+.+ |+... +. . . ...|++|+.|+++..- +.+...
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-------L~~~Di-- 133 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-------LKPLDI-- 133 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-------S-HHHH--
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-------chHHHH--
Confidence 4688999999443 22211 11 1 1 1268999999986421 223333
Q ss_pred HHHHHHcC-CCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCC
Q 004202 471 AQLIRSFG-VDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 515 (768)
Q Consensus 471 l~ll~~lg-ip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~ 515 (768)
..++.+. .-++|-||.|.|... .+.+..++..+...++..++
T Consensus 134 -~~mk~Ls~~vNvIPvIaKaD~lt--~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 134 -EFMKRLSKRVNVIPVIAKADTLT--PEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp -HHHHHHTTTSEEEEEESTGGGS---HHHHHHHHHHHHHHHHHTT-
T ss_pred -HHHHHhcccccEEeEEecccccC--HHHHHHHHHHHHHHHHHcCc
Confidence 3444443 224899999999986 67778888888888877664
No 347
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.37 E-value=6.3e-06 Score=88.37 Aligned_cols=67 Identities=22% Similarity=0.412 Sum_probs=41.5
Q ss_pred CCeEEEEEeCCCccchHHHHHH------hcc------cCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEE
Q 004202 416 KNYHVVVLDSPGHKDFVPNMIS------GAT------QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 483 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~------g~~------~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iI 483 (768)
.++.++||||||....-...+. .+. .+|..+||+||..+. .............++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~---------~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ---------NALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH---------HHHHHHHHHHhhCCCC--E
Confidence 5688999999996543222211 122 389999999998651 1122223333345554 5
Q ss_pred EEEecccccc
Q 004202 484 VAVNKMDAVQ 493 (768)
Q Consensus 484 VVvNKmDlv~ 493 (768)
+++||+|...
T Consensus 222 ~IlTKlDe~~ 231 (272)
T TIGR00064 222 IILTKLDGTA 231 (272)
T ss_pred EEEEccCCCC
Confidence 7899999764
No 348
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.36 E-value=1.2e-06 Score=95.71 Aligned_cols=94 Identities=12% Similarity=0.218 Sum_probs=53.7
Q ss_pred CCeEEEEEeCCCccch----HHH---HHHh-----cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEE
Q 004202 416 KNYHVVVLDSPGHKDF----VPN---MISG-----ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 483 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f----~~~---~i~g-----~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iI 483 (768)
.++.++||||||.... +.+ +... ...++..+||+||+.+. ....+........++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 5678999999995432 222 2221 13578999999999761 1112222222334554 5
Q ss_pred EEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 484 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 484 VVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+||+|... +.-.+...+ ... .+|+..++ +|+++.+
T Consensus 264 iIlTKlD~t~----~~G~~l~~~----~~~-----~~Pi~~v~--~Gq~~~D 300 (318)
T PRK10416 264 IILTKLDGTA----KGGVVFAIA----DEL-----GIPIKFIG--VGEGIDD 300 (318)
T ss_pred EEEECCCCCC----CccHHHHHH----HHH-----CCCEEEEe--CCCChhh
Confidence 7899999653 122222222 222 35677777 8888855
No 349
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.34 E-value=1.6e-06 Score=97.89 Aligned_cols=64 Identities=30% Similarity=0.569 Sum_probs=40.7
Q ss_pred CCeEEEEEeCCCccc----hHHHHHH--hcccCCEEEEEEecCCCccccccccchhhhHH-HHHHH-HHcCCCeEEEEEe
Q 004202 416 KNYHVVVLDSPGHKD----FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTRE-HAQLI-RSFGVDQLIVAVN 487 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~----f~~~~i~--g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e-~l~ll-~~lgip~iIVVvN 487 (768)
.++.++||||||... .+.++.. .+..+|.++||+||..| |... .+... ...++. -+++|
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G-----------q~a~~~a~~F~~~~~~~--g~IlT 247 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG-----------QAAEAQAKAFKDSVDVG--SVIIT 247 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC-----------hhHHHHHHHHHhccCCc--EEEEE
Confidence 467999999999443 3444422 34468999999999876 2221 22111 223443 67899
Q ss_pred ccccc
Q 004202 488 KMDAV 492 (768)
Q Consensus 488 KmDlv 492 (768)
|+|..
T Consensus 248 KlD~~ 252 (429)
T TIGR01425 248 KLDGH 252 (429)
T ss_pred CccCC
Confidence 99975
No 350
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.31 E-value=2.5e-06 Score=74.19 Aligned_cols=76 Identities=24% Similarity=0.489 Sum_probs=57.6
Q ss_pred CCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeecccccceeccCCceEEEecccccccccC
Q 004202 567 KPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMS 645 (768)
Q Consensus 567 ~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~r 645 (768)
.|.++.|...|... .. + +.|+|+.|+|++|..| -.....+|++||.++++++.|.+||.|+|.+.|.. ++..
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~-IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~e 75 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-A-IVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKE 75 (81)
T ss_dssp -SEEEEEEEEEEECTCC-E-EEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-T
T ss_pred CceEEEECCcCEEecCC-e-EEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCC
Confidence 35566666666555 56 5 6779999999999999 33368899999999999999999999999999854 7888
Q ss_pred Cccc
Q 004202 646 GGVL 649 (768)
Q Consensus 646 G~VL 649 (768)
||+|
T Consensus 76 GDiL 79 (81)
T PF14578_consen 76 GDIL 79 (81)
T ss_dssp T-EE
T ss_pred CCEE
Confidence 9987
No 351
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.25 E-value=1.8e-06 Score=87.50 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=92.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEe---e
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD---S 415 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~---~ 415 (768)
..++++|||...+|||.|+-.++. +.++++.-+.+. +.-...+. .
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~-------------------------------~~fp~~yvPTVF-dnys~~v~V~dg 50 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTT-------------------------------NAFPEEYVPTVF-DNYSANVTVDDG 50 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEecc-------------------------------CcCcccccCeEE-ccceEEEEecCC
Confidence 357999999999999999876662 122222222222 11111122 2
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cCCCeEEEEEeccccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQY 494 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVvNKmDlv~~ 494 (768)
....+.||||+|+++|-....-...++|++|++.+...+. +|+.+. .+.+-.+.+. -++| +|+|.+|.||.+
T Consensus 51 ~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~---S~~nv~--~kW~pEi~~~cp~vp-iiLVGtk~DLr~- 123 (198)
T KOG0393|consen 51 KPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPE---SFENVK--SKWIPEIKHHCPNVP-IILVGTKADLRD- 123 (198)
T ss_pred CEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChh---hHHHHH--hhhhHHHHhhCCCCC-EEEEeehHHhhh-
Confidence 3355789999999999764444667899999988876642 233221 1111122222 3677 899999999984
Q ss_pred chhhHHHHH---------HHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 495 SKDRFDSIK---------VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 495 s~e~~~~i~---------~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+....+.+. .+...+.+.+|. ..++.+||++..|+.+
T Consensus 124 d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga----~~y~EcSa~tq~~v~~ 169 (198)
T KOG0393|consen 124 DPSTLEKLQRQGLEPVTYEQGLELAKEIGA----VKYLECSALTQKGVKE 169 (198)
T ss_pred CHHHHHHHHhccCCcccHHHHHHHHHHhCc----ceeeeehhhhhCCcHH
Confidence 222222222 233334444442 5789999999999865
No 352
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.19 E-value=3.5e-06 Score=95.85 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=94.3
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
..+..++|++||..|+|||||+-.|+.+.-. +.-+ .+-+-++|- ..+..
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~---------------------------~~VP-~rl~~i~IP---advtP 53 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFV---------------------------DAVP-RRLPRILIP---ADVTP 53 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhcc---------------------------cccc-ccCCccccC---CccCc
Confidence 3457799999999999999999999953100 0000 011223332 12222
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc-----CCCeEEEEEeccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMD 490 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l-----gip~iIVVvNKmD 490 (768)
......|+||.-..+-.......+++||++.+|.+.++. ..++.+ ++ .-|-+++++ .+| +|+|-||.|
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~---~T~D~i--st-~WLPlir~~~~~~~~~P-VILvGNK~d 126 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDE---STVDRI--ST-KWLPLIRQLFGDYHETP-VILVGNKSD 126 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCCh---HHhhhh--hh-hhhhhhhcccCCCccCC-EEEEeeccC
Confidence 444588999987766556667889999999999998874 223332 11 122334444 366 999999999
Q ss_pred ccccchhh----HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 491 AVQYSKDR----FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 491 lv~~s~e~----~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
........ +.-+..++.++ -..|.+||++-.|+.+
T Consensus 127 ~~~~~~~s~e~~~~pim~~f~Ei----------EtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 127 NGDNENNSDEVNTLPIMIAFAEI----------ETCIECSALTLANVSE 165 (625)
T ss_pred CccccccchhHHHHHHHHHhHHH----------HHHHhhhhhhhhhhHh
Confidence 88643332 22222333322 1347788888888766
No 353
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.13 E-value=1.2e-05 Score=71.06 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=63.6
Q ss_pred CCCceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec----ccccceeccCCceEEEeccccc
Q 004202 566 SKPLLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDV 640 (768)
Q Consensus 566 ~~plr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gi~~ 640 (768)
+.||.+.|..+...+ .|.+ +++||.+|+|+.|+.|+... +...+|..|... ..++++|.|||++++. |+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~l-a~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~--gl-- 74 (85)
T cd03690 1 ESELSGTVFKIERDDKGERL-AYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILT--GL-- 74 (85)
T ss_pred CCCcEEEEEEeEECCCCCeE-EEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEE--CC--
Confidence 368899999998888 8988 89999999999999998654 444566677653 4688999999999886 54
Q ss_pred ccccCCcccc
Q 004202 641 SRVMSGGVLC 650 (768)
Q Consensus 641 ~~i~rG~VL~ 650 (768)
.++..||+|+
T Consensus 75 ~~~~~Gdtl~ 84 (85)
T cd03690 75 KGLRVGDVLG 84 (85)
T ss_pred CCCcCccccC
Confidence 4577899885
No 354
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.13 E-value=4.3e-06 Score=81.82 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=40.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
..+|+++|.+|+|||||+|+|++.... .....+|+|.......+ +..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~~~ 148 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVC------------------------------KVAPIPGETKVWQYITL---MKR 148 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCce------------------------------eeCCCCCeeEeEEEEEc---CCC
Confidence 468999999999999999999853211 12234778877554332 345
Q ss_pred EEEEeCCCc
Q 004202 420 VVVLDSPGH 428 (768)
Q Consensus 420 i~lIDTPGh 428 (768)
+.|+||||.
T Consensus 149 ~~liDtPGi 157 (157)
T cd01858 149 IYLIDCPGV 157 (157)
T ss_pred EEEEECcCC
Confidence 899999993
No 355
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.12 E-value=1.2e-05 Score=70.56 Aligned_cols=76 Identities=16% Similarity=0.286 Sum_probs=60.1
Q ss_pred eeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee----cccccceeccCCceEEEecccccccccC
Q 004202 571 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVMS 645 (768)
Q Consensus 571 ~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gi~~~~i~r 645 (768)
..|++++..+ .|.+ +++||.+|+|++||.|.+...+...+|..|.. ...++++|.|||++++. |+ .+++.
T Consensus 3 a~VfK~~~d~~~g~i-~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~ 77 (83)
T cd04092 3 ALAFKVVHDPQRGPL-TFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVIT--GL--KQTRT 77 (83)
T ss_pred EEEEecccCCCCCeE-EEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEE--CC--CCccc
Confidence 4566666666 7888 89999999999999999876666667777754 35789999999999875 65 45788
Q ss_pred Cccccc
Q 004202 646 GGVLCH 651 (768)
Q Consensus 646 G~VL~~ 651 (768)
||+|+.
T Consensus 78 Gdtl~~ 83 (83)
T cd04092 78 GDTLVT 83 (83)
T ss_pred CCEEeC
Confidence 999873
No 356
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.09 E-value=3.2e-06 Score=96.04 Aligned_cols=134 Identities=22% Similarity=0.362 Sum_probs=69.5
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCc------------cchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeE
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGR------------ITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 405 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~------------i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiT 405 (768)
..+..|+++|.+|+||||++..|...... .......++...+...+...+......+ ..+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d--~~~i----- 165 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKD--AVEI----- 165 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccC--HHHH-----
Confidence 34678999999999999999999754311 1112233333333333322110000000 0000
Q ss_pred EEEEEEEEeeCCeEEEEEeCCCccchHHH----H--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHH-HHcC
Q 004202 406 MTVAVAYFDSKNYHVVVLDSPGHKDFVPN----M--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFG 478 (768)
Q Consensus 406 id~~~~~~~~~~~~i~lIDTPGh~~f~~~----~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll-~~lg 478 (768)
...... ....+.++||||||....-.. + +..+..+|.++||+||..+. ...+.+... ..++
T Consensus 166 ~~~al~--~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq----------~av~~a~~F~~~l~ 233 (437)
T PRK00771 166 AKEGLE--KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ----------QAKNQAKAFHEAVG 233 (437)
T ss_pred HHHHHH--HhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH----------HHHHHHHHHHhcCC
Confidence 000000 012347999999995543222 2 33455799999999998751 122222211 1234
Q ss_pred CCeEEEEEeccccc
Q 004202 479 VDQLIVAVNKMDAV 492 (768)
Q Consensus 479 ip~iIVVvNKmDlv 492 (768)
+. -||+||+|..
T Consensus 234 i~--gvIlTKlD~~ 245 (437)
T PRK00771 234 IG--GIIITKLDGT 245 (437)
T ss_pred CC--EEEEecccCC
Confidence 43 5788999964
No 357
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.07 E-value=1.7e-05 Score=69.35 Aligned_cols=75 Identities=23% Similarity=0.392 Sum_probs=60.1
Q ss_pred eeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee----cccccceeccCCceEEEecccccccccC
Q 004202 571 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVMS 645 (768)
Q Consensus 571 ~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gi~~~~i~r 645 (768)
..|+++...+ .|.+ +++||.+|+|++||.|.+...+...+|..|.. ...++++|.|||+++|. |+ .+++.
T Consensus 3 a~Vfk~~~d~~~G~~-~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g~--~~~~~ 77 (83)
T cd04088 3 ALVFKTIHDPFVGKL-SFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVA--GL--KDTAT 77 (83)
T ss_pred EEEEEcccCCCCceE-EEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEE--CC--CCCcc
Confidence 3456666666 7887 89999999999999999887776777878764 25688999999999985 65 34778
Q ss_pred Ccccc
Q 004202 646 GGVLC 650 (768)
Q Consensus 646 G~VL~ 650 (768)
||+|+
T Consensus 78 Gdtl~ 82 (83)
T cd04088 78 GDTLC 82 (83)
T ss_pred CCEee
Confidence 99886
No 358
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.07 E-value=6.2e-06 Score=82.47 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=42.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|.+|+|||||+|+|++.... .....+|+|.......+ +.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~------------------------------~~~~~pg~T~~~~~~~~---~~ 162 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRAC------------------------------NVGATPGVTKSMQEVHL---DK 162 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccc------------------------------eecCCCCeEcceEEEEe---CC
Confidence 4589999999999999999999953211 12234888987766554 24
Q ss_pred EEEEEeCCCc
Q 004202 419 HVVVLDSPGH 428 (768)
Q Consensus 419 ~i~lIDTPGh 428 (768)
.+.|+||||.
T Consensus 163 ~~~l~DtPGi 172 (172)
T cd04178 163 KVKLLDSPGI 172 (172)
T ss_pred CEEEEECcCC
Confidence 6899999993
No 359
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.04 E-value=5.4e-05 Score=72.92 Aligned_cols=148 Identities=17% Similarity=0.189 Sum_probs=87.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEE-EEEEEEEeeC-
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM-TVAVAYFDSK- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTi-d~~~~~~~~~- 416 (768)
+.-+|+++|.-++|||.++.+|++....+.... --|+ |+-...++++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~-------------------------------~pTiEDiY~~svet~r 56 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL-------------------------------HPTIEDIYVASVETDR 56 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCcc-------------------------------ccchhhheeEeeecCC
Confidence 456899999999999999999997543332111 1122 2222333332
Q ss_pred --CeEEEEEeCCCccchHHHH-HHhcccCCEEEEEEecCCCccccccccchhhhHHHHH-HHHH----cCCCeEEEEEec
Q 004202 417 --NYHVVVLDSPGHKDFVPNM-ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRS----FGVDQLIVAVNK 488 (768)
Q Consensus 417 --~~~i~lIDTPGh~~f~~~~-i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~-ll~~----lgip~iIVVvNK 488 (768)
...+.|.||.|...+..+. ..++.-+|+.+||.+..+.. +|+ -.+.+. .+.. -.+| ++|..||
T Consensus 57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e---Sf~-----rv~llKk~Idk~KdKKEvp-iVVLaN~ 127 (198)
T KOG3883|consen 57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE---SFQ-----RVELLKKEIDKHKDKKEVP-IVVLANK 127 (198)
T ss_pred ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH---HHH-----HHHHHHHHHhhcccccccc-EEEEech
Confidence 3578899999988884444 55677799999999988742 222 111111 1111 2355 8889999
Q ss_pred ccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 489 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 489 mDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.|+.+. .+.+ .++... |. ....+..+.++|..-..+.+
T Consensus 128 rdr~~p--~~vd---~d~A~~---Wa-~rEkvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 128 RDRAEP--REVD---MDVAQI---WA-KREKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred hhcccc--hhcC---HHHHHH---HH-hhhheeEEEEEeccchhhhh
Confidence 999742 1111 111111 11 11345668888887776654
No 360
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.02 E-value=3.1e-05 Score=68.46 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=61.3
Q ss_pred ceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec---ccccceeccCCceEEEeccc-ccccc
Q 004202 569 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD---SQSCSVARAGDNIAVSLQGI-DVSRV 643 (768)
Q Consensus 569 lr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~---~~~v~~A~aGd~V~l~L~gi-~~~~i 643 (768)
|.+.|+++...+ .|.+ +++||.+|+|+.||.|++...++..+|..|... ..++++|.|||++++. .++ +..++
T Consensus 1 ~~~~Vfk~~~d~~~G~i-~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~ 78 (86)
T cd03699 1 LRALIFDSWYDPYRGVI-ALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDA 78 (86)
T ss_pred CEEEEEEeeccCCCCEE-EEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCcc
Confidence 356677777777 7988 899999999999999988766655666666543 4688999999999884 122 22457
Q ss_pred cCCccccc
Q 004202 644 MSGGVLCH 651 (768)
Q Consensus 644 ~rG~VL~~ 651 (768)
..||+|++
T Consensus 79 ~~Gdtl~~ 86 (86)
T cd03699 79 RVGDTITL 86 (86)
T ss_pred ccccEeeC
Confidence 78999873
No 361
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.01 E-value=4.6e-06 Score=94.58 Aligned_cols=135 Identities=24% Similarity=0.401 Sum_probs=72.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh----Cc----c-----chhhhhHHHHHHhhhCCCccchhhccccchhhhccCeE
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLL----GR----I-----TQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 405 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~----~~----i-----~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiT 405 (768)
++..|+++|.+|+||||++..|.... +. + ......+++..+...+.+.+.... ...+.+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~--~~~P~~i----- 170 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGK--GQSPVEI----- 170 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCC--CCCHHHH-----
Confidence 45788999999999999988887542 11 1 112334444444444433321100 0000000
Q ss_pred EEEEEEEEeeCCeEEEEEeCCCccc----hHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHH-HHcC
Q 004202 406 MTVAVAYFDSKNYHVVVLDSPGHKD----FVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFG 478 (768)
Q Consensus 406 id~~~~~~~~~~~~i~lIDTPGh~~----f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll-~~lg 478 (768)
...+...+...++.++|+||||... .+.++ +..+..+|.++||+|+..+ ....+.+... ..++
T Consensus 171 ~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg----------q~~~~~a~~f~~~v~ 240 (428)
T TIGR00959 171 ARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG----------QDAVNTAKTFNERLG 240 (428)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch----------HHHHHHHHHHHhhCC
Confidence 0000001112567899999999432 33333 2334568999999999864 1222222222 3456
Q ss_pred CCeEEEEEeccccc
Q 004202 479 VDQLIVAVNKMDAV 492 (768)
Q Consensus 479 ip~iIVVvNKmDlv 492 (768)
+. -+|+||+|..
T Consensus 241 i~--giIlTKlD~~ 252 (428)
T TIGR00959 241 LT--GVVLTKLDGD 252 (428)
T ss_pred CC--EEEEeCccCc
Confidence 54 4679999954
No 362
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.01 E-value=3.1e-05 Score=67.58 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=56.8
Q ss_pred eEeEEeeCCCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec----ccccceeccCCceEEEecccccccccCCcc
Q 004202 573 ICDVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD----SQSCSVARAGDNIAVSLQGIDVSRVMSGGV 648 (768)
Q Consensus 573 I~dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L~gi~~~~i~rG~V 648 (768)
|+++...+.|.+ +++||.+|+|++||.|++...+...+|..|... ..++++|.|||++++. ++ + ++.||+
T Consensus 5 vfK~~~~~~G~i-~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~--g~--~-~~~Gdt 78 (81)
T cd04091 5 AFKLEEGRFGQL-TYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIF--GI--D-CASGDT 78 (81)
T ss_pred EEEeecCCCCCE-EEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEE--CC--C-cccCCE
Confidence 444443347888 899999999999999999887777778777642 4688999999999865 65 3 778999
Q ss_pred cc
Q 004202 649 LC 650 (768)
Q Consensus 649 L~ 650 (768)
|+
T Consensus 79 l~ 80 (81)
T cd04091 79 FT 80 (81)
T ss_pred ec
Confidence 86
No 363
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.01 E-value=2e-05 Score=76.77 Aligned_cols=78 Identities=22% Similarity=0.251 Sum_probs=50.8
Q ss_pred hcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCC
Q 004202 438 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 517 (768)
Q Consensus 438 g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~ 517 (768)
.+..+|++|+|+|++.+. ..+..+...++...+.| +|+|+||+|+.+ .+.... +..+....
T Consensus 9 i~~~aD~vl~V~D~~~~~--------~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~--~~~~~~----~~~~~~~~---- 69 (156)
T cd01859 9 IIKESDVVLEVLDARDPE--------LTRSRKLERYVLELGKK-LLIVLNKADLVP--KEVLEK----WKSIKESE---- 69 (156)
T ss_pred HHhhCCEEEEEeeCCCCc--------ccCCHHHHHHHHhCCCc-EEEEEEhHHhCC--HHHHHH----HHHHHHhC----
Confidence 344599999999998753 22334444455556777 899999999964 222211 11222221
Q ss_pred CCCcEEEeecccCCCccc
Q 004202 518 ASLTWIPLSALENQNLVT 535 (768)
Q Consensus 518 ~~i~~IpVSA~tG~gI~e 535 (768)
..+++++||++|.|+.+
T Consensus 70 -~~~~~~iSa~~~~gi~~ 86 (156)
T cd01859 70 -GIPVVYVSAKERLGTKI 86 (156)
T ss_pred -CCcEEEEEccccccHHH
Confidence 24679999999999965
No 364
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.00 E-value=3.1e-05 Score=68.19 Aligned_cols=77 Identities=25% Similarity=0.444 Sum_probs=59.9
Q ss_pred ceeeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCC---eeeEEEeeee----cccccceeccCCceEEEeccccc
Q 004202 569 LLMPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---EVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDV 640 (768)
Q Consensus 569 lr~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~---~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gi~~ 640 (768)
|++.|+++...+ .|.+ +++||.+|+|++||+|++.-.+ ...+|..|.. ...++++|.|||++++. ++
T Consensus 1 ~~~~vfk~~~d~~~g~i-~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~--gl-- 75 (86)
T cd03691 1 LQMLVTTLDYDDYVGRI-AIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA--GI-- 75 (86)
T ss_pred CeEEEEEeEecCCCCeE-EEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE--CC--
Confidence 467788888877 7888 8999999999999999876542 2456777743 34689999999998665 65
Q ss_pred ccccCCcccc
Q 004202 641 SRVMSGGVLC 650 (768)
Q Consensus 641 ~~i~rG~VL~ 650 (768)
.++..|++|+
T Consensus 76 ~~~~~Gdtl~ 85 (86)
T cd03691 76 EDITIGDTIC 85 (86)
T ss_pred CCCcccceec
Confidence 4577899885
No 365
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.00 E-value=0.00011 Score=75.85 Aligned_cols=142 Identities=20% Similarity=0.290 Sum_probs=82.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccC-eEEEEEEEEEeeCC-
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG-ITMTVAVAYFDSKN- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~G-iTid~~~~~~~~~~- 417 (768)
.+||++||..|.|||||+|.|....- .+ ++. .+ ...++-+. +.+......++.++
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v-~~---------------~s~------~~-~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHV-SD---------------SSS------SD-NSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHH-hh---------------ccC------CC-cccCcccceEEEEeeeeeeeecce
Confidence 58999999999999999999983210 00 000 01 11222222 23333334444444
Q ss_pred -eEEEEEeCCCccc---------------------hHHHHHHhcc-------cCCEEEEEEecCCCccccccccchhhhH
Q 004202 418 -YHVVVLDSPGHKD---------------------FVPNMISGAT-------QSDAAILVIDASVGSFEVGMNTAKGLTR 468 (768)
Q Consensus 418 -~~i~lIDTPGh~~---------------------f~~~~i~g~~-------~aD~aILVVDA~~g~~e~~~~~~~~qt~ 468 (768)
-++++|||||.-+ |++.-+...+ ..+++++.|.++-.. +.+...
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-------LrplDi 175 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-------LRPLDI 175 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-------cCcccH
Confidence 3688999999333 4433322222 145788888877532 345555
Q ss_pred HHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCC
Q 004202 469 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 515 (768)
Q Consensus 469 e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~ 515 (768)
|.+..+.. +-++|-||-|.|... -+...+.++.+++-|...++
T Consensus 176 eflkrLt~--vvNvvPVIakaDtlT--leEr~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 176 EFLKRLTE--VVNVVPVIAKADTLT--LEERSAFKQRIRKELEKHGI 218 (336)
T ss_pred HHHHHHhh--hheeeeeEeeccccc--HHHHHHHHHHHHHHHHhcCc
Confidence 65544332 234778999999775 34445567777777766554
No 366
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.99 E-value=1.5e-05 Score=77.97 Aligned_cols=82 Identities=17% Similarity=0.057 Sum_probs=51.3
Q ss_pred HHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecccccccchhhHHHHHHHHhHHHhh
Q 004202 435 MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRS 512 (768)
Q Consensus 435 ~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~ 512 (768)
.+..+..+|++++|+|+..+. ..........+... +.| +|+|+||+|+.+ ++........+.. .
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~--------~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~--~~~~~~~~~~~~~---~ 67 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPM--------GTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVP--TWVTARWVKILSK---E 67 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCc--------cccCHHHHHHHHhccCCCC-EEEEEEchhcCC--HHHHHHHHHHHhc---C
Confidence 356778899999999998763 12334444444433 366 899999999974 3322222222211 1
Q ss_pred cCCCCCCCcEEEeecccCCCccc
Q 004202 513 CGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 513 ~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+ ...++++||+.+.|+.+
T Consensus 68 --~---~~~~~~iSa~~~~~~~~ 85 (157)
T cd01858 68 --Y---PTIAFHASINNPFGKGS 85 (157)
T ss_pred --C---cEEEEEeeccccccHHH
Confidence 1 12358999999999865
No 367
>PRK10867 signal recognition particle protein; Provisional
Probab=97.98 E-value=5.2e-06 Score=94.17 Aligned_cols=135 Identities=22% Similarity=0.346 Sum_probs=68.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh----Cc----c-----chhhhhHHHHHHhhhCCCccchhhccccchhhhccCeE
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLL----GR----I-----TQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 405 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~----~~----i-----~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiT 405 (768)
++..|+++|.+|+||||++..|...+ +. + ......++...+...+-..+......+ +.+-.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~d--p~~i~---- 172 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQD--PVDIA---- 172 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCC--HHHHH----
Confidence 45788999999999999888887532 11 1 111223333333333322221000000 00000
Q ss_pred EEEEEEEEeeCCeEEEEEeCCCcc----chHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHH-HHHcC
Q 004202 406 MTVAVAYFDSKNYHVVVLDSPGHK----DFVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL-IRSFG 478 (768)
Q Consensus 406 id~~~~~~~~~~~~i~lIDTPGh~----~f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~l-l~~lg 478 (768)
..+.......++.++||||||.. ..+.++ +..+..++.++||+|+..| ....+.+.. ...++
T Consensus 173 -~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g----------q~av~~a~~F~~~~~ 241 (433)
T PRK10867 173 -KAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG----------QDAVNTAKAFNEALG 241 (433)
T ss_pred -HHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH----------HHHHHHHHHHHhhCC
Confidence 00000111246789999999943 233332 2234468999999999754 112222221 12344
Q ss_pred CCeEEEEEeccccc
Q 004202 479 VDQLIVAVNKMDAV 492 (768)
Q Consensus 479 ip~iIVVvNKmDlv 492 (768)
+. -+|+||+|..
T Consensus 242 i~--giIlTKlD~~ 253 (433)
T PRK10867 242 LT--GVILTKLDGD 253 (433)
T ss_pred CC--EEEEeCccCc
Confidence 44 5678999964
No 368
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=97.97 E-value=3.4e-05 Score=68.18 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=57.6
Q ss_pred eEeEEe---eC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeee----cccccceeccCCceEEEeccccccccc
Q 004202 573 ICDVLK---SQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIER----DSQSCSVARAGDNIAVSLQGIDVSRVM 644 (768)
Q Consensus 573 I~dv~~---~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~----~~~~v~~A~aGd~V~l~L~gi~~~~i~ 644 (768)
|+.+.. .+ .|.+ +++||.+|+|+.||.|+....+...+|..|.. ...++++|.|||++++. ++ .+++
T Consensus 3 vfKv~~~~~~~~~Gkl-a~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~--gl--~~~~ 77 (85)
T cd03689 3 VFKIQANMDPAHRDRI-AFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLV--NP--GNFQ 77 (85)
T ss_pred EEEEecccCCCCCcEE-EEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEE--CC--CCcc
Confidence 344555 56 7888 89999999999999998876665666767654 24688999999999987 54 4577
Q ss_pred CCccccc
Q 004202 645 SGGVLCH 651 (768)
Q Consensus 645 rG~VL~~ 651 (768)
.||+||+
T Consensus 78 ~Gdtl~~ 84 (85)
T cd03689 78 IGDTLTE 84 (85)
T ss_pred ccCEeeC
Confidence 8999974
No 369
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=5.4e-05 Score=84.29 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=43.2
Q ss_pred CeEEEEEeCCCccc----hHHHHHHhc--ccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 417 NYHVVVLDSPGHKD----FVPNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 417 ~~~i~lIDTPGh~~----f~~~~i~g~--~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
++.++||||||... .+..+...+ ..++.++||+||+.+ .....+.+.....+++.. +++||+|
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk---------~~d~~~i~~~F~~~~idg--lI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHIDG--IVFTKFD 388 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC---------hHHHHHHHHHhcCCCCCE--EEEEccc
Confidence 46899999999533 344443322 347889999999754 123344554445567764 6799999
Q ss_pred ccc
Q 004202 491 AVQ 493 (768)
Q Consensus 491 lv~ 493 (768)
...
T Consensus 389 ET~ 391 (436)
T PRK11889 389 ETA 391 (436)
T ss_pred CCC
Confidence 764
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.92 E-value=4.1e-05 Score=73.61 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=54.5
Q ss_pred HHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--CCCeEEEEEecccccccchhhHHHHHHHHhHHH
Q 004202 433 PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFL 510 (768)
Q Consensus 433 ~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l--gip~iIVVvNKmDlv~~s~e~~~~i~~el~~~l 510 (768)
......+..+|++|+|+|+..+. ..+..+...++... +.| +++|+||+|+++ ++... .+...+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~--------~~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~--~~~~~----~~~~~~ 67 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPL--------LFRPPDLERYVKEVDPRKK-NILLLNKADLLT--EEQRK----AWAEYF 67 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCc--------ccCCHHHHHHHHhccCCCc-EEEEEechhcCC--HHHHH----HHHHHH
Confidence 45567788999999999998763 22444555555555 676 899999999974 23222 233344
Q ss_pred hhcCCCCCCCcEEEeecccCCC
Q 004202 511 RSCGFKDASLTWIPLSALENQN 532 (768)
Q Consensus 511 k~~g~~~~~i~~IpVSA~tG~g 532 (768)
+..+ ..++++||++|.+
T Consensus 68 ~~~~-----~~ii~iSa~~~~~ 84 (141)
T cd01857 68 KKEG-----IVVVFFSALKENA 84 (141)
T ss_pred HhcC-----CeEEEEEecCCCc
Confidence 3333 3679999999886
No 371
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.92 E-value=2.1e-05 Score=81.30 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=61.5
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..-+|+++|.+.+|||||+..|+.-..... .| .-+|....-..+.+++.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA-------------------~y------------eFTTLtcIpGvi~y~ga 109 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAA-------------------SY------------EFTTLTCIPGVIHYNGA 109 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhh-------------------ce------------eeeEEEeecceEEecCc
Confidence 457999999999999999999983211110 11 11355555556777999
Q ss_pred EEEEEeCCCccch-------HHHHHHhcccCCEEEEEEecCCC
Q 004202 419 HVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASVG 454 (768)
Q Consensus 419 ~i~lIDTPGh~~f-------~~~~i~g~~~aD~aILVVDA~~g 454 (768)
.|.++|.||..+- -+..++.++.||+++.|+||+.+
T Consensus 110 ~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 110 NIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred eEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 9999999995442 23445667779999999999986
No 372
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.90 E-value=0.00019 Score=78.44 Aligned_cols=144 Identities=19% Similarity=0.344 Sum_probs=88.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhh-hccCeEEEEEEEEEeeCC
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE-RERGITMTVAVAYFDSKN 417 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~E-re~GiTid~~~~~~~~~~ 417 (768)
-.++|.+||..|.||||++|.|++. .+.... ..+....+ ..+++.+......+.-++
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~--~l~~~~--------------------~~~~~~~~~~~~~~~i~~~~~~l~e~~ 79 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGT--SLVDET--------------------EIDDIRAEGTSPTLEIKITKAELEEDG 79 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHh--hccCCC--------------------CccCcccccCCcceEEEeeeeeeecCC
Confidence 4689999999999999999999964 111000 00111111 345555666555555555
Q ss_pred --eEEEEEeCCCccch-------------HHHHHHh--------cc-------cCCEEEEEEecCCCccccccccchhhh
Q 004202 418 --YHVVVLDSPGHKDF-------------VPNMISG--------AT-------QSDAAILVIDASVGSFEVGMNTAKGLT 467 (768)
Q Consensus 418 --~~i~lIDTPGh~~f-------------~~~~i~g--------~~-------~aD~aILVVDA~~g~~e~~~~~~~~qt 467 (768)
.++++|||||.-++ +...... -+ ..+++|+.|-.+.. ++.++.
T Consensus 80 ~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-------~l~~~D 152 (373)
T COG5019 80 FHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-------GLKPLD 152 (373)
T ss_pred eEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-------CCCHHH
Confidence 46889999995542 2222111 11 26789998876532 134455
Q ss_pred HHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCC
Q 004202 468 REHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 515 (768)
Q Consensus 468 ~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~ 515 (768)
.+.+..+.. .+ ++|-||-|.|... .+.+..+++.+.+.+....+
T Consensus 153 Ie~Mk~ls~-~v-NlIPVI~KaD~lT--~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 153 IEAMKRLSK-RV-NLIPVIAKADTLT--DDELAEFKERIREDLEQYNI 196 (373)
T ss_pred HHHHHHHhc-cc-CeeeeeeccccCC--HHHHHHHHHHHHHHHHHhCC
Confidence 554433322 23 3788999999885 56778888888888877653
No 373
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=97.88 E-value=4.7e-06 Score=59.00 Aligned_cols=29 Identities=34% Similarity=0.752 Sum_probs=23.8
Q ss_pred CCceeecccccCCCCCcccccccCCCCCc
Q 004202 48 PRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (768)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (768)
.|.|.|+.|||.|......|.|||++|.+
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVACGAPRPG 30 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred CcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence 46799999999999999999999999963
No 374
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.85 E-value=0.00017 Score=71.50 Aligned_cols=67 Identities=22% Similarity=0.463 Sum_probs=42.1
Q ss_pred CCeEEEEEeCCCccc----hHHHHHH--hcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecc
Q 004202 416 KNYHVVVLDSPGHKD----FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 489 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~----f~~~~i~--g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKm 489 (768)
.++.++|+||||... .+..+.. ....+|.+++|+|+..+ .........+....++. .+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~---------~~~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG---------QDAVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC---------hHHHHHHHHHHhhCCCC--EEEEECC
Confidence 467799999999753 3333211 12349999999999754 12223333344455653 5778999
Q ss_pred cccc
Q 004202 490 DAVQ 493 (768)
Q Consensus 490 Dlv~ 493 (768)
|...
T Consensus 150 D~~~ 153 (173)
T cd03115 150 DGDA 153 (173)
T ss_pred cCCC
Confidence 9864
No 375
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.84 E-value=2.5e-05 Score=76.32 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=42.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...+++++|.+|+|||||+|+|+..... .....+|+|.+.....+. .
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~---~ 145 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKL------------------------------KVGNVPGTTTSQQEVKLD---N 145 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccc------------------------------cccCCCCcccceEEEEec---C
Confidence 3578999999999999999999953211 123346788887665542 4
Q ss_pred EEEEEeCCCc
Q 004202 419 HVVVLDSPGH 428 (768)
Q Consensus 419 ~i~lIDTPGh 428 (768)
.+.|+||||.
T Consensus 146 ~~~liDtPG~ 155 (155)
T cd01849 146 KIKLLDTPGI 155 (155)
T ss_pred CEEEEECCCC
Confidence 6999999993
No 376
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00011 Score=81.86 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.-.++++|++|+||||++..|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999854
No 377
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.81 E-value=0.00015 Score=77.67 Aligned_cols=54 Identities=31% Similarity=0.487 Sum_probs=44.3
Q ss_pred HcCCCeEEEEEeccccc-------ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 476 SFGVDQLIVAVNKMDAV-------QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 476 ~lgip~iIVVvNKmDlv-------~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+|++ ++||+||+|.+ ++..+.|+.|...++.|+-.+|- ..|.+|++...|++-
T Consensus 220 NlGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 220 NLGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYTSVKETKNIDL 280 (473)
T ss_pred cCCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEeecccccchHH
Confidence 36788 89999999984 35567899999999999877773 568999999999854
No 378
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.81 E-value=0.00026 Score=73.82 Aligned_cols=88 Identities=20% Similarity=0.176 Sum_probs=54.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee--
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~-- 415 (768)
.+...|+|+|.+++|||||+|+|++.... |. + ... . ..+|..+-......
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~--------------------f~--~-~~~-~----~~~T~gi~~~~~~~~~ 56 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSG--------------------FD--V-MDT-S----QQTTKGIWMWSVPFKL 56 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCC--------------------eE--e-cCC-C----CCCccceEEEeccccC
Confidence 35578999999999999999999953211 10 0 000 0 12222222222222
Q ss_pred -CCeEEEEEeCCCccc------hHHHHHHhccc--CCEEEEEEecCC
Q 004202 416 -KNYHVVVLDSPGHKD------FVPNMISGATQ--SDAAILVIDASV 453 (768)
Q Consensus 416 -~~~~i~lIDTPGh~~------f~~~~i~g~~~--aD~aILVVDA~~ 453 (768)
.+..++|+||||..+ .....+..+.. +|++|+.++...
T Consensus 57 ~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 57 GKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 457899999999433 23333555555 999999998865
No 379
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.00013 Score=79.16 Aligned_cols=171 Identities=19% Similarity=0.223 Sum_probs=103.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCc--cchhhccccchhhhccCeEEEEEEE-EEe-
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGS--FAYAWALDESAEERERGITMTVAVA-YFD- 414 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s--~~~a~~~d~~~~Ere~GiTid~~~~-~~~- 414 (768)
..+-|.++|.-..||||+++.|+...-. ..+.|.+. -++..+|....++.-+|.+.-+... .|.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dyp------------g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~g 124 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYP------------GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRG 124 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCC------------ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhh
Confidence 3467999999999999999999953100 11223221 2334456666677777777654311 110
Q ss_pred ----------------eCC---eEEEEEeCCCccc-----------hHHHHHHhcccCCEEEEEEecCCCccccccccch
Q 004202 415 ----------------SKN---YHVVVLDSPGHKD-----------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAK 464 (768)
Q Consensus 415 ----------------~~~---~~i~lIDTPGh~~-----------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~ 464 (768)
..+ ..|+||||||.-. |.....=.+..+|.+||+.|+..-. +.
T Consensus 125 L~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD-------Is 197 (532)
T KOG1954|consen 125 LNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD-------IS 197 (532)
T ss_pred hhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc-------cc
Confidence 011 4699999999322 3333333456799999999997632 23
Q ss_pred hhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcC--CCCCCCcEEEeecccCCCcc
Q 004202 465 GLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG--FKDASLTWIPLSALENQNLV 534 (768)
Q Consensus 465 ~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g--~~~~~i~~IpVSA~tG~gI~ 534 (768)
..+.+.+..++...-+ +=||+||.|.++ .++ +..-...++.++| ++.+.+.-+.+-+....-+.
T Consensus 198 dEf~~vi~aLkG~Edk-iRVVLNKADqVd--tqq---LmRVyGALmWslgkv~nTpev~rvYigSfw~hPl~ 263 (532)
T KOG1954|consen 198 DEFKRVIDALKGHEDK-IRVVLNKADQVD--TQQ---LMRVYGALMWSLGKVMNTPEVSRVYIGSFWDHPLQ 263 (532)
T ss_pred HHHHHHHHHhhCCcce-eEEEeccccccC--HHH---HHHHHHHHHHhhhhhcCCCcceeEEeeccccCccc
Confidence 5677777766655544 778999999996 333 3333444554443 22234555666666554443
No 380
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00013 Score=82.09 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=70.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC--------ccchh-----hhhHHHHHHhhhCCCccchhhccccchhhhccCeEE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLG--------RITQK-----QMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM 406 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~--------~i~~~-----~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTi 406 (768)
...|+++|.+|+||||++..|..... .++-+ ...++...+...+-+.+......+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~------------ 290 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKK------------ 290 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHH------------
Confidence 45689999999999999999985321 01111 122222222222221110000000
Q ss_pred EEEEEEEeeCCeEEEEEeCCCccc----hHHHHHH---hcc--cCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc
Q 004202 407 TVAVAYFDSKNYHVVVLDSPGHKD----FVPNMIS---GAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF 477 (768)
Q Consensus 407 d~~~~~~~~~~~~i~lIDTPGh~~----f~~~~i~---g~~--~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l 477 (768)
....+...++.++||||||... .+..+.. ... ...-.+||+||+.+ .....+.+..-..+
T Consensus 291 --l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~---------~~~~~~~~~~f~~~ 359 (432)
T PRK12724 291 --FKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS---------YHHTLTVLKAYESL 359 (432)
T ss_pred --HHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC---------HHHHHHHHHHhcCC
Confidence 0000011467899999999542 2333322 221 24578999999976 23445555555667
Q ss_pred CCCeEEEEEecccccc
Q 004202 478 GVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 478 gip~iIVVvNKmDlv~ 493 (768)
++.. +++||+|-..
T Consensus 360 ~~~g--lIlTKLDEt~ 373 (432)
T PRK12724 360 NYRR--ILLTKLDEAD 373 (432)
T ss_pred CCCE--EEEEcccCCC
Confidence 7764 6799999763
No 381
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.78 E-value=2.8e-05 Score=85.35 Aligned_cols=57 Identities=30% Similarity=0.405 Sum_probs=44.1
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 417 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~ 417 (768)
....+|+++|.+|+|||||+|+|++.... ...+.+|+|..........
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~------------------------------~~s~~PG~Tk~~q~i~~~~-- 177 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVA------------------------------KTSNRPGTTKGIQWIKLDD-- 177 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccce------------------------------eeCCCCceecceEEEEcCC--
Confidence 34578999999999999999999964332 2233479999887776543
Q ss_pred eEEEEEeCCC
Q 004202 418 YHVVVLDSPG 427 (768)
Q Consensus 418 ~~i~lIDTPG 427 (768)
.+.|+||||
T Consensus 178 -~i~LlDtPG 186 (322)
T COG1161 178 -GIYLLDTPG 186 (322)
T ss_pred -CeEEecCCC
Confidence 489999999
No 382
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.78 E-value=0.00011 Score=70.97 Aligned_cols=153 Identities=16% Similarity=0.230 Sum_probs=98.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhh--ccCeEEEEEEEEEee
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER--ERGITMTVAVAYFDS 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Er--e~GiTid~~~~~~~~ 415 (768)
.-.++|+++|..-.|||||+-...+.. .++|. ..|+-.--...++..
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~-------------------------------~de~~~q~~GvN~mdkt~~i~~ 66 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNE-------------------------------YDEEYTQTLGVNFMDKTVSIRG 66 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcch-------------------------------hHHHHHHHhCccceeeEEEecc
Confidence 346899999999999999988777421 11111 122221111222222
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC---CCeEEEEEeccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG---VDQLIVAVNKMDAV 492 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg---ip~iIVVvNKmDlv 492 (768)
....+.|||..|+++|....--....+-+++++.|-+.... + .-.++-.+.++.++ +| |+|.+|-|+.
T Consensus 67 t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T---L----nSi~~WY~QAr~~NktAiP--ilvGTKyD~f 137 (205)
T KOG1673|consen 67 TDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST---L----NSIKEWYRQARGLNKTAIP--ILVGTKYDLF 137 (205)
T ss_pred eEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH---H----HHHHHHHHHHhccCCccce--EEeccchHhh
Confidence 33457799999999988766666667888889999887531 1 22344445555553 55 7899999964
Q ss_pred -ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 493 -QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 493 -~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.-+.+.-+.+..+-+.+.+-.. .+.+.+|+-...|+.+
T Consensus 138 i~lp~e~Q~~I~~qar~YAk~mn-----AsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 138 IDLPPELQETISRQARKYAKVMN-----ASLFFCSTSHSINVQK 176 (205)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhC-----CcEEEeeccccccHHH
Confidence 3334545556666666665544 4568999999999865
No 383
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=8.7e-05 Score=74.01 Aligned_cols=148 Identities=24% Similarity=0.289 Sum_probs=92.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEE--EEEee
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV--AYFDS 415 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~--~~~~~ 415 (768)
....+++++|..+.||+|++.+.+. +.| |..--.|+.+.. ..|.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~lt----------------------geF-----------e~~y~at~Gv~~~pl~f~t 54 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLT----------------------GEF-----------EKTYPATLGVEVHPLLFDT 54 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhc----------------------ccc-----------eecccCcceeEEeeeeeec
Confidence 4578999999999999999999872 111 111111222221 22222
Q ss_pred --CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004202 416 --KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 416 --~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
+..++..|||+|++.|....-.+.-++-.||++.|...-..-... ..+.+..+..+ -++| |+++.||.|.-.
T Consensus 55 n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~---~rwhrd~~rv~--~NiP-iv~cGNKvDi~~ 128 (216)
T KOG0096|consen 55 NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNV---PRWHRDLVRVR--ENIP-IVLCGNKVDIKA 128 (216)
T ss_pred ccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcc---hHHHHHHHHHh--cCCC-eeeeccceeccc
Confidence 347899999999999988777778889999999998864322211 12233333222 2478 899999999753
Q ss_pred cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 494 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 494 ~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
. + ++..--.+. ...++.++.+||+.+-|...
T Consensus 129 r-~-----~k~k~v~~~-----rkknl~y~~iSaksn~Nfek 159 (216)
T KOG0096|consen 129 R-K-----VKAKPVSFH-----RKKNLQYYEISAKSNYNFER 159 (216)
T ss_pred c-c-----cccccceee-----ecccceeEEeeccccccccc
Confidence 1 1 111111111 12456789999999999865
No 384
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.76 E-value=5.1e-05 Score=75.41 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=56.5
Q ss_pred CCCcc-chHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHH
Q 004202 425 SPGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 503 (768)
Q Consensus 425 TPGh~-~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~ 503 (768)
-|||- +.+.++...+..||++|+|+|++.+.. ....+.+..+ .+.| +|+|+||+|+.+ ++...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~--------~~~~~i~~~~--~~k~-~ilVlNK~Dl~~--~~~~~--- 65 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLS--------SRNPLLEKIL--GNKP-RIIVLNKADLAD--PKKTK--- 65 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccC--------cCChhhHhHh--cCCC-EEEEEehhhcCC--hHHHH---
Confidence 36754 466777888899999999999987531 1222222221 2555 789999999974 22211
Q ss_pred HHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 504 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 504 ~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
...++++..+ ..++++||+++.|+.+
T Consensus 66 -~~~~~~~~~~-----~~vi~iSa~~~~gi~~ 91 (171)
T cd01856 66 -KWLKYFESKG-----EKVLFVNAKSGKGVKK 91 (171)
T ss_pred -HHHHHHHhcC-----CeEEEEECCCcccHHH
Confidence 1212222222 3579999999999965
No 385
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.76 E-value=3.7e-05 Score=77.55 Aligned_cols=63 Identities=24% Similarity=0.222 Sum_probs=42.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
.+++++|.+|+|||||+|+|+......... .........+|+|.+.....+.. .+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~----------------------~~~~~~~~~~gtT~~~~~~~~~~---~~ 182 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL----------------------KDLLTTSPIPGTTLDLIKIPLGN---GK 182 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc----------------------ccccccCCCCCeeeeeEEEecCC---CC
Confidence 579999999999999999999532110000 00112234578999987666532 58
Q ss_pred EEEeCCCc
Q 004202 421 VVLDSPGH 428 (768)
Q Consensus 421 ~lIDTPGh 428 (768)
.|+||||.
T Consensus 183 ~~~DtPG~ 190 (190)
T cd01855 183 KLYDTPGI 190 (190)
T ss_pred EEEeCcCC
Confidence 99999994
No 386
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.75 E-value=8.2e-05 Score=75.05 Aligned_cols=91 Identities=18% Similarity=0.066 Sum_probs=52.9
Q ss_pred hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHh-HH
Q 004202 431 FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG-TF 509 (768)
Q Consensus 431 f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~-~~ 509 (768)
|...+...+..+|++|+|+|+..... ....+. .....+.| +|+|+||+|++... .....+..... ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l--~~~~~~~~-~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~ 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL--RLFGGNNP-VILVGNKIDLLPKD-KNLVRIKNWLRAKA 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC--------ccchhH--HHhcCCCc-EEEEEEchhcCCCC-CCHHHHHHHHHHHH
Confidence 45555666788999999999986421 111221 12234566 89999999997521 11111211110 11
Q ss_pred HhhcCCCCCCCcEEEeecccCCCccc
Q 004202 510 LRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 510 lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
.+..++. ...++++||++|+|+.+
T Consensus 92 ~~~~~~~--~~~i~~vSA~~~~gi~e 115 (190)
T cd01855 92 AAGLGLK--PKDVILISAKKGWGVEE 115 (190)
T ss_pred HhhcCCC--cccEEEEECCCCCCHHH
Confidence 1222321 12579999999999966
No 387
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=6.4e-05 Score=82.54 Aligned_cols=83 Identities=27% Similarity=0.276 Sum_probs=54.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEE--EEe---
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA--YFD--- 414 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~--~~~--- 414 (768)
.++++|||-||+|||||+|+|+.....+. +| +-+||+.... ++.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~a-------------------NY------------PF~TIePN~Giv~v~d~r 50 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIA-------------------NY------------PFCTIEPNVGVVYVPDCR 50 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCcccc-------------------CC------------CcccccCCeeEEecCchH
Confidence 37899999999999999999995321111 11 2233332211 110
Q ss_pred -------------eCCeEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCC
Q 004202 415 -------------SKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 453 (768)
Q Consensus 415 -------------~~~~~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~ 453 (768)
.-...+.|+|.+|... +-...+..++.+|++++||||..
T Consensus 51 l~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 51 LDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred HHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 0012478999999433 55666778899999999999984
No 388
>PRK12288 GTPase RsgA; Reviewed
Probab=97.72 E-value=3.9e-05 Score=84.99 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=40.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
.++|+|.+|+|||||+|+|+.......... .....+.+.+|.......+..++ .
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~i-----------------------s~~~~rGrHTT~~~~l~~l~~~~---~ 260 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDV-----------------------SDNSGLGQHTTTAARLYHFPHGG---D 260 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccc-----------------------cCcCCCCcCceeeEEEEEecCCC---E
Confidence 379999999999999999995432211110 01112334466666655553333 5
Q ss_pred EEeCCCccch
Q 004202 422 VLDSPGHKDF 431 (768)
Q Consensus 422 lIDTPGh~~f 431 (768)
||||||...|
T Consensus 261 liDTPGir~~ 270 (347)
T PRK12288 261 LIDSPGVREF 270 (347)
T ss_pred EEECCCCCcc
Confidence 9999997765
No 389
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.72 E-value=2.2e-05 Score=77.47 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
..++++|+.|+|||||+|+|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999954
No 390
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.72 E-value=6.3e-05 Score=81.30 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=41.8
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|.+|+|||||+|+|++.... .....+|+|........ +.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~---~~ 166 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIA------------------------------KTGNRPGVTKAQQWIKL---GK 166 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcc------------------------------ccCCCCCeEEEEEEEEe---CC
Confidence 4589999999999999999999953111 11223788888764443 34
Q ss_pred EEEEEeCCCc
Q 004202 419 HVVVLDSPGH 428 (768)
Q Consensus 419 ~i~lIDTPGh 428 (768)
.+.|+||||.
T Consensus 167 ~~~l~DtPGi 176 (287)
T PRK09563 167 GLELLDTPGI 176 (287)
T ss_pred cEEEEECCCc
Confidence 6899999994
No 391
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.71 E-value=0.00011 Score=71.67 Aligned_cols=74 Identities=26% Similarity=0.244 Sum_probs=45.9
Q ss_pred CEEEEEEecCCCccccccccchhhhHHHH-HHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCCCCc
Q 004202 443 DAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLT 521 (768)
Q Consensus 443 D~aILVVDA~~g~~e~~~~~~~~qt~e~l-~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~ 521 (768)
|++|+|+|+..+.. ....... ..+...+.| +|+|+||+|+++ ++..... +..+ .... ...
T Consensus 1 Dvvl~VvD~~~p~~--------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~--~~~~~~~---~~~~-~~~~----~~~ 61 (155)
T cd01849 1 DVILEVLDARDPLG--------TRSPDIERVLIKEKGKK-LILVLNKADLVP--KEVLRKW---LAYL-RHSY----PTI 61 (155)
T ss_pred CEEEEEEeccCCcc--------ccCHHHHHHHHhcCCCC-EEEEEechhcCC--HHHHHHH---HHHH-HhhC----Cce
Confidence 78999999987631 1222222 345556777 899999999975 2222111 1111 1111 235
Q ss_pred EEEeecccCCCccc
Q 004202 522 WIPLSALENQNLVT 535 (768)
Q Consensus 522 ~IpVSA~tG~gI~e 535 (768)
++++||++|.|+.+
T Consensus 62 ii~vSa~~~~gi~~ 75 (155)
T cd01849 62 PFKISATNGQGIEK 75 (155)
T ss_pred EEEEeccCCcChhh
Confidence 79999999999865
No 392
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.00031 Score=76.28 Aligned_cols=131 Identities=20% Similarity=0.317 Sum_probs=77.3
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhh------------CccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeE
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLL------------GRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 405 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~------------~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiT 405 (768)
..+..|.++|-.|+||||.++.|.+.+ .+++...++|++.-+.+.|....... . .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~-----------~--G 203 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK-----------E--G 203 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC-----------C--C
Confidence 457889999999999999999998773 44555667777766666554333110 0 0
Q ss_pred EEEEEEEE------eeCCeEEEEEeCCC--cc--chHHHHH--Hhccc------CCEEEEEEecCCCccccccccchhhh
Q 004202 406 MTVAVAYF------DSKNYHVVVLDSPG--HK--DFVPNMI--SGATQ------SDAAILVIDASVGSFEVGMNTAKGLT 467 (768)
Q Consensus 406 id~~~~~~------~~~~~~i~lIDTPG--h~--~f~~~~i--~g~~~------aD~aILVVDA~~g~~e~~~~~~~~qt 467 (768)
.|.+...| ...++.+.|+||+| |. .++.++. ..+.. ++-+++|+||..|- +. ..|.
T Consensus 204 ~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq-----na-l~QA 277 (340)
T COG0552 204 ADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ-----NA-LSQA 277 (340)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh-----hH-HHHH
Confidence 11111111 12567899999999 22 2444442 22222 34488888999871 10 1222
Q ss_pred HHHHHHHHHcCCCeEEEEEeccccc
Q 004202 468 REHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 468 ~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
+. +-...++. -+++||+|-.
T Consensus 278 k~---F~eav~l~--GiIlTKlDgt 297 (340)
T COG0552 278 KI---FNEAVGLD--GIILTKLDGT 297 (340)
T ss_pred HH---HHHhcCCc--eEEEEecccC
Confidence 22 22334665 5789999943
No 393
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.71 E-value=4.4e-05 Score=73.44 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 004202 342 NLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
+++++|.+|+|||||+|+|++
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999984
No 394
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00017 Score=80.15 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=68.4
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhC-------ccchh-----hhhHHHHHHhhhCCCccchhhccccchhhhccCeEE
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLG-------RITQK-----QMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM 406 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~-------~i~~~-----~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTi 406 (768)
+...|+++|+.|+||||++..|..... .++-+ ...++...+...+-..+. ..+ +.+-..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~---~~d--p~dL~~---- 275 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV---ATS--PAELEE---- 275 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEe---cCC--HHHHHH----
Confidence 356789999999999999999986430 11111 122222222222211100 000 000000
Q ss_pred EEEEEEEe-eCCeEEEEEeCCCccc----hHHHHHH--hcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCC
Q 004202 407 TVAVAYFD-SKNYHVVVLDSPGHKD----FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 479 (768)
Q Consensus 407 d~~~~~~~-~~~~~i~lIDTPGh~~----f~~~~i~--g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgi 479 (768)
+...+. ..++.++||||||... .+.++.. ....+|.++||+++... ..+..+.+.....+++
T Consensus 276 --al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~---------~~d~~~i~~~f~~l~i 344 (407)
T PRK12726 276 --AVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK---------SADVMTILPKLAEIPI 344 (407)
T ss_pred --HHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc---------HHHHHHHHHhcCcCCC
Confidence 000000 1357899999999643 3333322 22356888899988542 1233333333344556
Q ss_pred CeEEEEEecccccc
Q 004202 480 DQLIVAVNKMDAVQ 493 (768)
Q Consensus 480 p~iIVVvNKmDlv~ 493 (768)
. -+++||+|...
T Consensus 345 ~--glI~TKLDET~ 356 (407)
T PRK12726 345 D--GFIITKMDETT 356 (407)
T ss_pred C--EEEEEcccCCC
Confidence 5 46799999753
No 395
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00022 Score=80.71 Aligned_cols=131 Identities=16% Similarity=0.223 Sum_probs=71.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhh----C--c---c-----chhhhhHHHHHHhhhCCCccchhhccccchhhhccCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLL----G--R---I-----TQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI 404 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~----~--~---i-----~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~Gi 404 (768)
..-+|+++|..|+||||++..|.+.. + . + .-..++++...+...|-..... ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v-----~~~~d----- 259 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSI-----KDIAD----- 259 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecC-----CCHHH-----
Confidence 34689999999999999999988642 1 0 1 1112223333333332211100 00000
Q ss_pred EEEEEEEEEeeCCeEEEEEeCCCccchHHH---H---HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcC
Q 004202 405 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPN---M---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG 478 (768)
Q Consensus 405 Tid~~~~~~~~~~~~i~lIDTPGh~~f~~~---~---i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lg 478 (768)
.........++.+.||||+|....... . +..+....-.+||+||+.+ .....+.+.....++
T Consensus 260 ---l~~al~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~---------~~~~~~~~~~f~~~~ 327 (420)
T PRK14721 260 ---LQLMLHELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS---------GDTLDEVISAYQGHG 327 (420)
T ss_pred ---HHHHHHHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC---------HHHHHHHHHHhcCCC
Confidence 000011235678999999995543222 1 2223345678999999864 123344444445567
Q ss_pred CCeEEEEEecccccc
Q 004202 479 VDQLIVAVNKMDAVQ 493 (768)
Q Consensus 479 ip~iIVVvNKmDlv~ 493 (768)
+. -+++||+|-..
T Consensus 328 ~~--~~I~TKlDEt~ 340 (420)
T PRK14721 328 IH--GCIITKVDEAA 340 (420)
T ss_pred CC--EEEEEeeeCCC
Confidence 66 46799999764
No 396
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.68 E-value=0.00025 Score=78.97 Aligned_cols=123 Identities=18% Similarity=0.276 Sum_probs=75.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC--------------ccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLG--------------RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 405 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~--------------~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiT 405 (768)
...|++||++|+||||.+..|..... ..+-...+|+...+...+ +.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~--------------------vp 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMG--------------------VP 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhC--------------------Cc
Confidence 67899999999999999999986543 111122333333333322 22
Q ss_pred EEEEEEE--E-----eeCCeEEEEEeCCCccch----HHHHHHhcc--cCCEEEEEEecCCCccccccccchhhhHHHHH
Q 004202 406 MTVAVAY--F-----DSKNYHVVVLDSPGHKDF----VPNMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQ 472 (768)
Q Consensus 406 id~~~~~--~-----~~~~~~i~lIDTPGh~~f----~~~~i~g~~--~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ 472 (768)
+.+.... | ....+.++||||.|+..+ +.++...+. ...-..||++|+.. ....++.+.
T Consensus 263 ~~vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K---------~~dlkei~~ 333 (407)
T COG1419 263 LEVVYSPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK---------YEDLKEIIK 333 (407)
T ss_pred eEEecCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc---------hHHHHHHHH
Confidence 2222111 0 125678999999996554 333322222 35567789999863 245566666
Q ss_pred HHHHcCCCeEEEEEecccccc
Q 004202 473 LIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 473 ll~~lgip~iIVVvNKmDlv~ 493 (768)
....+++.. +++||+|-..
T Consensus 334 ~f~~~~i~~--~I~TKlDET~ 352 (407)
T COG1419 334 QFSLFPIDG--LIFTKLDETT 352 (407)
T ss_pred HhccCCcce--eEEEcccccC
Confidence 666777774 5789999775
No 397
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.68 E-value=8.1e-05 Score=77.47 Aligned_cols=85 Identities=22% Similarity=0.241 Sum_probs=59.8
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 419 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~ 419 (768)
.-+|.++|.+.+|||||+..|++....+... -++|..........++..
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasy-------------------------------efttl~~vpG~~~y~gaK 107 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAY-------------------------------EFTTLTTVPGVIRYKGAK 107 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccc-------------------------------cceeEEEecceEeccccc
Confidence 3489999999999999999998532222110 233444444445568889
Q ss_pred EEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCCCc
Q 004202 420 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGS 455 (768)
Q Consensus 420 i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~g~ 455 (768)
+.+.|.||..+ --+..+.-++.++++++|+|+..+.
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcc
Confidence 99999999554 2344566677899999999998763
No 398
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.67 E-value=8.9e-05 Score=79.66 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=55.9
Q ss_pred CCccc-hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHH
Q 004202 426 PGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 504 (768)
Q Consensus 426 PGh~~-f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~ 504 (768)
|||.. ..+.+...+..+|++|+|+||..+.. ........++ .+.| +|+|+||+|+++ ++....
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~--------~~~~~i~~~l--~~kp-~IiVlNK~DL~~--~~~~~~--- 68 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS--------SRNPMIDEIR--GNKP-RLIVLNKADLAD--PAVTKQ--- 68 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC--------CCChhHHHHH--CCCC-EEEEEEccccCC--HHHHHH---
Confidence 78654 56667778889999999999987531 1112222222 2455 899999999974 222221
Q ss_pred HHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 505 QLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 505 el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
....++..+ .+++++||+++.|+.+
T Consensus 69 -~~~~~~~~~-----~~vi~iSa~~~~gi~~ 93 (276)
T TIGR03596 69 -WLKYFEEKG-----IKALAINAKKGKGVKK 93 (276)
T ss_pred -HHHHHHHcC-----CeEEEEECCCcccHHH
Confidence 122222222 3679999999999865
No 399
>PRK12289 GTPase RsgA; Reviewed
Probab=97.66 E-value=0.00014 Score=80.76 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=55.0
Q ss_pred cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCC
Q 004202 439 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 518 (768)
Q Consensus 439 ~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~ 518 (768)
++.+|.+++|+|+.++.+. ..+..+.+..+...++| +|+|+||+|+++ .+..+ .+...+..+|+
T Consensus 87 ~aNvD~vLlV~d~~~p~~~------~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~--~~~~~----~~~~~~~~~g~--- 150 (352)
T PRK12289 87 VANADQILLVFALAEPPLD------PWQLSRFLVKAESTGLE-IVLCLNKADLVS--PTEQQ----QWQDRLQQWGY--- 150 (352)
T ss_pred hhcCCEEEEEEECCCCCCC------HHHHHHHHHHHHHCCCC-EEEEEEchhcCC--hHHHH----HHHHHHHhcCC---
Confidence 6789999999999865321 12445556666667888 799999999985 22222 22333344554
Q ss_pred CCcEEEeecccCCCccc
Q 004202 519 SLTWIPLSALENQNLVT 535 (768)
Q Consensus 519 ~i~~IpVSA~tG~gI~e 535 (768)
+++++||++|.|+.+
T Consensus 151 --~v~~iSA~tg~GI~e 165 (352)
T PRK12289 151 --QPLFISVETGIGLEA 165 (352)
T ss_pred --eEEEEEcCCCCCHHH
Confidence 579999999999965
No 400
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.66 E-value=6.6e-05 Score=80.64 Aligned_cols=57 Identities=28% Similarity=0.261 Sum_probs=41.1
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++|+++|.+|+|||||+|+|++.... .....+|+|.......+ . .
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~------------------------------~~~~~~g~T~~~~~~~~--~-~ 163 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVA------------------------------KVGNRPGVTKGQQWIKL--S-D 163 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcc------------------------------ccCCCCCeecceEEEEe--C-C
Confidence 4589999999999999999999842111 11223777877665443 2 3
Q ss_pred EEEEEeCCCc
Q 004202 419 HVVVLDSPGH 428 (768)
Q Consensus 419 ~i~lIDTPGh 428 (768)
.+.|+||||.
T Consensus 164 ~~~l~DtPG~ 173 (276)
T TIGR03596 164 GLELLDTPGI 173 (276)
T ss_pred CEEEEECCCc
Confidence 6899999996
No 401
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.64 E-value=0.00012 Score=72.08 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.++++|..|+|||||+++|+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999999865
No 402
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.63 E-value=0.0001 Score=81.90 Aligned_cols=82 Identities=21% Similarity=0.165 Sum_probs=55.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC-ccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee----
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLG-RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---- 415 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~-~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~---- 415 (768)
++++|+|.+|+|||||+++|+.... .+. +| +.+|++.....+..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a-------------------~y------------pftTi~p~~g~v~v~d~r 51 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAA-------------------NP------------PFTTIEPNAGVVNPSDPR 51 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccC-------------------CC------------CCCCCCCceeEEEechhH
Confidence 6899999999999999999995432 111 11 11222222221111
Q ss_pred -------------CCeEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCC
Q 004202 416 -------------KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 453 (768)
Q Consensus 416 -------------~~~~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~ 453 (768)
....+.++|.||... +-...+..++.+|++++||++..
T Consensus 52 ~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 52 LDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred HHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 224688999999543 45566778899999999999864
No 403
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00029 Score=79.08 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=42.3
Q ss_pred CCeEEEEEeCCCccc----hHHHHHHhcc--cCC-EEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec
Q 004202 416 KNYHVVVLDSPGHKD----FVPNMISGAT--QSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 488 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~----f~~~~i~g~~--~aD-~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK 488 (768)
.++.++||||||... .+..+...+. .++ -.+||+||+.+ .....+.+.....+++.. +++||
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~---------~~~~~~~~~~~~~~~~~~--~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK---------TSDVKEIFHQFSPFSYKT--VIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC---------HHHHHHHHHHhcCCCCCE--EEEEe
Confidence 568899999999432 2233322222 233 68999999976 233445555445566663 67999
Q ss_pred ccccc
Q 004202 489 MDAVQ 493 (768)
Q Consensus 489 mDlv~ 493 (768)
+|-..
T Consensus 322 lDet~ 326 (388)
T PRK12723 322 LDETT 326 (388)
T ss_pred ccCCC
Confidence 99764
No 404
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.63 E-value=6.7e-05 Score=79.28 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=40.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
..++++|++|+|||||+|+|+.......... .....+.+.+|.+.....+ .+ -
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i-----------------------~~~~~~G~hTT~~~~l~~l--~~--~ 173 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDI-----------------------SSKLGLGKHTTTHVELFHF--HG--G 173 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccce-----------------------eccCCCCCCcCCceEEEEc--CC--c
Confidence 3689999999999999999995422111000 0012234557777766665 22 3
Q ss_pred EEEeCCCccc
Q 004202 421 VVLDSPGHKD 430 (768)
Q Consensus 421 ~lIDTPGh~~ 430 (768)
.|+||||...
T Consensus 174 ~liDtPG~~~ 183 (245)
T TIGR00157 174 LIADTPGFNE 183 (245)
T ss_pred EEEeCCCccc
Confidence 8999999655
No 405
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.62 E-value=0.00011 Score=73.09 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=41.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..++++++|.+|+|||||+++|+..... .....+|+|.......+. .
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~---~ 160 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA------------------------------KVGNKPGVTKGIQWIKIS---P 160 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCEEeeeEEEEec---C
Confidence 3478999999999999999999942110 112235678776665543 5
Q ss_pred EEEEEeCCCc
Q 004202 419 HVVVLDSPGH 428 (768)
Q Consensus 419 ~i~lIDTPGh 428 (768)
.+.|+||||.
T Consensus 161 ~~~~iDtpG~ 170 (171)
T cd01856 161 GIYLLDTPGI 170 (171)
T ss_pred CEEEEECCCC
Confidence 6899999995
No 406
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.57 E-value=0.00015 Score=76.67 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=54.5
Q ss_pred HhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCC
Q 004202 437 SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 516 (768)
Q Consensus 437 ~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~ 516 (768)
..++.+|.+++|+|+..+.+ ++ ....+.+..+...+++ +++|+||+||.+. .. +..+....++..+
T Consensus 32 ~~~~n~D~viiV~d~~~p~~--s~----~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~--~~---~~~~~~~~~~~~g-- 97 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPEL--SL----NQLDRFLVVAEAQNIE-PIIVLNKIDLLDD--ED---MEKEQLDIYRNIG-- 97 (245)
T ss_pred cccccCCEEEEEEECCCCCC--CH----HHHHHHHHHHHHCCCC-EEEEEECcccCCC--HH---HHHHHHHHHHHCC--
Confidence 46788999999999987531 11 2344445555667888 7899999999742 11 1112222333334
Q ss_pred CCCCcEEEeecccCCCccc
Q 004202 517 DASLTWIPLSALENQNLVT 535 (768)
Q Consensus 517 ~~~i~~IpVSA~tG~gI~e 535 (768)
.+++.+||++|+|+.+
T Consensus 98 ---~~v~~~SAktg~gi~e 113 (245)
T TIGR00157 98 ---YQVLMTSSKNQDGLKE 113 (245)
T ss_pred ---CeEEEEecCCchhHHH
Confidence 4789999999999966
No 407
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.56 E-value=0.001 Score=76.55 Aligned_cols=53 Identities=30% Similarity=0.470 Sum_probs=41.8
Q ss_pred cCCCeEEEEEecccccc-------cchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 477 FGVDQLIVAVNKMDAVQ-------YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 477 lgip~iIVVvNKmDlv~-------~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+|+| ++||++|.|... |.++.|+.|...|+.++-..|- ..|.+|.+...|+..
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-----sL~yts~~~~~n~~~ 254 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-----SLIYTSVKEEKNLDL 254 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-----eEEEeeccccccHHH
Confidence 3677 899999999753 6677888899999998877663 568899999888743
No 408
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.55 E-value=4e-06 Score=83.01 Aligned_cols=152 Identities=19% Similarity=0.260 Sum_probs=98.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe--
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY-- 418 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~-- 418 (768)
.++.|+|.-++|||+++.+.++..-. |.+ ...|..+.+...+.++.+
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs----------------------~~y---------RAtIgvdfalkVl~wdd~t~ 74 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFS----------------------YHY---------RATIGVDFALKVLQWDDKTI 74 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHH----------------------HHH---------HHHHhHHHHHHHhccChHHH
Confidence 57889999999999999998853211 000 011122222233334433
Q ss_pred -EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH----cCCC-eEEEEEeccccc
Q 004202 419 -HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVD-QLIVAVNKMDAV 492 (768)
Q Consensus 419 -~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~----lgip-~iIVVvNKmDlv 492 (768)
++.|||.+|+++|-..+.-+...|.++.+|+|.+....+... .+....+-.. .|.| .+++..||+|.-
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~------skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPV------SKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHH------HHHHHhccCcccCCCCCcchheeccchhccC
Confidence 466999999999988888888899999999999875322111 1111111111 2333 368888999986
Q ss_pred ccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccC
Q 004202 493 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 536 (768)
Q Consensus 493 ~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~ 536 (768)
.+ ...+.-..+.++.+..||. .|+.+|++.+.|+.+.
T Consensus 149 ~~---a~~~~~~~~d~f~kengf~----gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 149 KS---AKNEATRQFDNFKKENGFE----GWTETSAKENKNIPEA 185 (229)
T ss_pred hH---hhhhhHHHHHHHHhccCcc----ceeeeccccccChhHH
Confidence 43 2233345677777777774 5799999999999874
No 409
>PRK12289 GTPase RsgA; Reviewed
Probab=97.54 E-value=9e-05 Score=82.26 Aligned_cols=64 Identities=23% Similarity=0.221 Sum_probs=39.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEE
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 421 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~ 421 (768)
.++|+|.+|+|||||+|+|+.......... .....+.+.+|.+.....+..+ ..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~v-----------------------s~~~~rGrHTT~~~~l~~l~~g---~~ 227 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKV-----------------------SGKLGRGRHTTRHVELFELPNG---GL 227 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccc-----------------------cCCCCCCCCcCceeEEEECCCC---cE
Confidence 489999999999999999995432211110 0011233446766655444322 27
Q ss_pred EEeCCCccch
Q 004202 422 VLDSPGHKDF 431 (768)
Q Consensus 422 lIDTPGh~~f 431 (768)
|+||||...+
T Consensus 228 liDTPG~~~~ 237 (352)
T PRK12289 228 LADTPGFNQP 237 (352)
T ss_pred EEeCCCcccc
Confidence 9999997654
No 410
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.53 E-value=9.7e-05 Score=79.41 Aligned_cols=65 Identities=26% Similarity=0.320 Sum_probs=42.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
...+++|+.|+|||||+|+|......-.. ..+. ...+.+.+|.......|..++
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~-------eIS~----------------~~~rGkHTTt~~~l~~l~~gG--- 218 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTG-------EISE----------------KLGRGRHTTTHVELFPLPGGG--- 218 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhh-------hhcc----------------cCCCCCCccceEEEEEcCCCC---
Confidence 46889999999999999999853221110 0111 122345567777666665444
Q ss_pred EEEeCCCccch
Q 004202 421 VVLDSPGHKDF 431 (768)
Q Consensus 421 ~lIDTPGh~~f 431 (768)
.||||||...|
T Consensus 219 ~iiDTPGf~~~ 229 (301)
T COG1162 219 WIIDTPGFRSL 229 (301)
T ss_pred EEEeCCCCCcc
Confidence 68999997664
No 411
>PRK00098 GTPase RsgA; Reviewed
Probab=97.53 E-value=0.00027 Score=76.89 Aligned_cols=80 Identities=28% Similarity=0.360 Sum_probs=53.7
Q ss_pred cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCC
Q 004202 439 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 518 (768)
Q Consensus 439 ~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~ 518 (768)
++.+|.+++|+|+..+.+. .....+.+..+...++| +++|+||+|+.+. .+... ++...++.++
T Consensus 78 aaniD~vllV~d~~~p~~~------~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~-~~~~~----~~~~~~~~~g---- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS------TDLLDRFLVLAEANGIK-PIIVLNKIDLLDD-LEEAR----ELLALYRAIG---- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCC------HHHHHHHHHHHHHCCCC-EEEEEEhHHcCCC-HHHHH----HHHHHHHHCC----
Confidence 6889999999999765321 12334455556677888 7899999999731 22221 2223333444
Q ss_pred CCcEEEeecccCCCccc
Q 004202 519 SLTWIPLSALENQNLVT 535 (768)
Q Consensus 519 ~i~~IpVSA~tG~gI~e 535 (768)
++++++||++|.|+.+
T Consensus 142 -~~v~~vSA~~g~gi~~ 157 (298)
T PRK00098 142 -YDVLELSAKEGEGLDE 157 (298)
T ss_pred -CeEEEEeCCCCccHHH
Confidence 4689999999999965
No 412
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.51 E-value=7.5e-05 Score=72.85 Aligned_cols=35 Identities=14% Similarity=0.410 Sum_probs=27.3
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCC
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV 453 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~ 453 (768)
.++.++||||||... .....+..||.+|+|+....
T Consensus 90 ~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~ 124 (148)
T cd03114 90 AGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGA 124 (148)
T ss_pred cCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCc
Confidence 468899999999653 33457788999999998763
No 413
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.49 E-value=0.00027 Score=76.44 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=56.5
Q ss_pred CCCccc-hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHH
Q 004202 425 SPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 503 (768)
Q Consensus 425 TPGh~~-f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~ 503 (768)
-|||-. -.+++...+..+|++|+|+||..+. .....+...++. +.| +|+|+||+|+++ .+..+
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~--------~~~~~~l~~~~~--~kp-~iiVlNK~DL~~--~~~~~--- 70 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPL--------SSENPMIDKIIG--NKP-RLLILNKSDLAD--PEVTK--- 70 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCC--------CCCChhHHHHhC--CCC-EEEEEEchhcCC--HHHHH---
Confidence 478654 4566677788999999999998753 112222222222 556 899999999974 22222
Q ss_pred HHHhHHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 504 VQLGTFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 504 ~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
....+++..+ .+++++||.++.|+.+
T Consensus 71 -~~~~~~~~~~-----~~vi~vSa~~~~gi~~ 96 (287)
T PRK09563 71 -KWIEYFEEQG-----IKALAINAKKGQGVKK 96 (287)
T ss_pred -HHHHHHHHcC-----CeEEEEECCCcccHHH
Confidence 2222222222 4679999999999865
No 414
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.48 E-value=0.00064 Score=72.83 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=43.3
Q ss_pred CeEEEEEeCCCccc----hHHHHHHh--cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 417 NYHVVVLDSPGHKD----FVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 417 ~~~i~lIDTPGh~~----f~~~~i~g--~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
++.++||||||... .+.++... ...+|..+||+||+.. .....+.+.....+++. -+++||+|
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~---------~~d~~~~~~~f~~~~~~--~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHID--GIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC---------HHHHHHHHHHhCCCCCC--EEEEEeec
Confidence 57899999999542 34444332 3457889999999753 12334444444456666 46799999
Q ss_pred ccc
Q 004202 491 AVQ 493 (768)
Q Consensus 491 lv~ 493 (768)
...
T Consensus 223 et~ 225 (270)
T PRK06731 223 ETA 225 (270)
T ss_pred CCC
Confidence 764
No 415
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=97.48 E-value=4.2e-05 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=23.6
Q ss_pred CceeecccccCCCCCcccccccCCC
Q 004202 49 RVWSCAICTYDNEEGMSVCDICGVL 73 (768)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~ 73 (768)
|.|.|+.|+|.|......|++|+++
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGAP 25 (26)
T ss_pred CcccCCCCCCcChhhhccccccCCc
Confidence 4699999999999999999999986
No 416
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0012 Score=72.83 Aligned_cols=143 Identities=18% Similarity=0.326 Sum_probs=84.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCC--
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 417 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~-- 417 (768)
.+++.++|..|.|||||+|.|... ....... ...........+++......++-++
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~-~l~~~~~---------------------~~~~~~~~~~t~~i~~~~~~iee~g~~ 78 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLT-DLSGNRE---------------------VPGASERIKETVEIESTKVEIEENGVK 78 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhh-hccCCcc---------------------cCCcccCccccceeeeeeeeecCCCeE
Confidence 489999999999999999999853 1000000 0111112222334444444444444
Q ss_pred eEEEEEeCCCccc-------------hHHHHHHh------------cc--cCCEEEEEEecCCCccccccccchhhhHHH
Q 004202 418 YHVVVLDSPGHKD-------------FVPNMISG------------AT--QSDAAILVIDASVGSFEVGMNTAKGLTREH 470 (768)
Q Consensus 418 ~~i~lIDTPGh~~-------------f~~~~i~g------------~~--~aD~aILVVDA~~g~~e~~~~~~~~qt~e~ 470 (768)
.+++++||||.-+ |+...... .. ..+++|+.|..+.. ++.+...+.
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-------gL~p~Di~~ 151 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-------GLKPLDIEF 151 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-------CCcHhhHHH
Confidence 4678999999554 22222111 11 36788888876532 134455554
Q ss_pred HHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCC
Q 004202 471 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 515 (768)
Q Consensus 471 l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~ 515 (768)
+..+. -.+. +|-||-|.|... .+.+..++..+.+.+....+
T Consensus 152 Mk~l~-~~vN-iIPVI~KaD~lT--~~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 152 MKKLS-KKVN-LIPVIAKADTLT--KDELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred HHHHh-cccc-ccceeeccccCC--HHHHHHHHHHHHHHHHHcCc
Confidence 43332 2344 788999999886 56667778888877766543
No 417
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.43 E-value=0.00033 Score=75.74 Aligned_cols=84 Identities=25% Similarity=0.245 Sum_probs=58.6
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeC--
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 416 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~-- 416 (768)
.+++++|||.+|+|||||+|+|+.... +.+.| +-.||+.....+...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a-----------------~~~Nf--------------PF~TIdPn~a~V~v~d~ 67 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKA-----------------GAANF--------------PFCTIDPNEARVEVPDS 67 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCC-----------------CccCC--------------CcceeccccceeecCch
Confidence 568999999999999999999994321 11222 334555443333211
Q ss_pred ---------------CeEEEEEeCCCccc-------hHHHHHHhcccCCEEEEEEecCC
Q 004202 417 ---------------NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 453 (768)
Q Consensus 417 ---------------~~~i~lIDTPGh~~-------f~~~~i~g~~~aD~aILVVDA~~ 453 (768)
...+++.|++|... +-...++.++.+|+++.||+|..
T Consensus 68 Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 68 RFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 13588999999443 55666788899999999999875
No 418
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.41 E-value=0.0013 Score=74.46 Aligned_cols=145 Identities=19% Similarity=0.256 Sum_probs=79.8
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhCccchhh----hhHHHHHHhhhCCCccchhhcccc------------------
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQ----MHKYEKEAKLQGKGSFAYAWALDE------------------ 395 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~----~~~~e~~a~~~gk~s~~~a~~~d~------------------ 395 (768)
...++|++||...+|||+.+..+.... |-++. |... ..-.....|.+..+.+-|.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqAR--IFPRGSGEMMTRa-PVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQAR--IFPRGSGEMMTRS-PVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhc--cCcCCCcceeccC-CeEEEeccCcchhhhhccccccccccchhHHHHHHHH
Confidence 346899999999999999999988541 11100 0000 0000001111111111110
Q ss_pred ----chhhhccCeEEEEEEEEEeeCC---eEEEEEeCCCccc-------------hHHHHHHhcccCCEEEEEE-ecCCC
Q 004202 396 ----SAEERERGITMTVAVAYFDSKN---YHVVVLDSPGHKD-------------FVPNMISGATQSDAAILVI-DASVG 454 (768)
Q Consensus 396 ----~~~Ere~GiTid~~~~~~~~~~---~~i~lIDTPGh~~-------------f~~~~i~g~~~aD~aILVV-DA~~g 454 (768)
....-..|.|+..-...+..+| .+++|+|.||... .+.....++..++++||+| |.+-.
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD 462 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD 462 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc
Confidence 0111245777776666655444 5788999999322 3444466778899999997 33321
Q ss_pred ccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccc
Q 004202 455 SFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 455 ~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~ 493 (768)
. | ....-.....+.-+|.. .|+|+||+|+..
T Consensus 463 A-E------RSnVTDLVsq~DP~GrR-TIfVLTKVDlAE 493 (980)
T KOG0447|consen 463 A-E------RSIVTDLVSQMDPHGRR-TIFVLTKVDLAE 493 (980)
T ss_pred h-h------hhhHHHHHHhcCCCCCe-eEEEEeecchhh
Confidence 0 0 11222233344456665 799999999985
No 419
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.39 E-value=0.0012 Score=75.38 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=42.4
Q ss_pred CCeEEEEEeCCCccch-------HHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec
Q 004202 416 KNYHVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 488 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f-------~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK 488 (768)
.++.++||||||...+ +..++.......-++||++++.+ .....+.+.....+++. -|++||
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~---------~~~l~~~~~~f~~~~~~--~vI~TK 366 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK---------YEDLKDIYKHFSRLPLD--GLIFTK 366 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC---------HHHHHHHHHHhCCCCCC--EEEEec
Confidence 4578999999995432 22233322245678899999865 23444445555555654 478999
Q ss_pred ccccc
Q 004202 489 MDAVQ 493 (768)
Q Consensus 489 mDlv~ 493 (768)
+|...
T Consensus 367 lDet~ 371 (424)
T PRK05703 367 LDETS 371 (424)
T ss_pred ccccc
Confidence 99753
No 420
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.38 E-value=0.00011 Score=73.58 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=43.8
Q ss_pred CeEEEEEeCCCccchHH-----HHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccc
Q 004202 417 NYHVVVLDSPGHKDFVP-----NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 491 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~-----~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDl 491 (768)
...++||.+.|..+-.. ..+......+.+|.||||..-. ....... .+..++..-. +|++||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~--------~~~~~~~-~~~~Qi~~AD-vIvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFD--------ELENIPE-LLREQIAFAD-VIVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHG--------GHTTHCH-HHHHHHCT-S-EEEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEecccccc--------ccccchh-hhhhcchhcC-EEEEecccc
Confidence 45789999999444222 2233345579999999996520 0111111 2233333333 678999999
Q ss_pred cccchhhHHHHHHHHhHH
Q 004202 492 VQYSKDRFDSIKVQLGTF 509 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~ 509 (768)
++.. +.++.+++.++++
T Consensus 154 ~~~~-~~i~~~~~~ir~l 170 (178)
T PF02492_consen 154 VSDE-QKIERVREMIREL 170 (178)
T ss_dssp HHHH---HHHHHHHHHHH
T ss_pred CChh-hHHHHHHHHHHHH
Confidence 9732 2335555555544
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.00096 Score=80.28 Aligned_cols=130 Identities=20% Similarity=0.261 Sum_probs=67.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC------c---cchh-----hhhHHHHHHhhhCCCccchhhccccchhhhccCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLG------R---ITQK-----QMHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 405 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~------~---i~~~-----~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiT 405 (768)
.-.|++||+.|+||||++..|..... . +..+ ..+++...+...+-..+.. . ...+-...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~---~--~~~~l~~al- 258 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAV---K--DAADLRFAL- 258 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcccc---C--CHHHHHHHH-
Confidence 35789999999999999999985431 0 0111 1223333333333211100 0 000000000
Q ss_pred EEEEEEEEeeCCeEEEEEeCCCcc----chHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc--
Q 004202 406 MTVAVAYFDSKNYHVVVLDSPGHK----DFVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-- 477 (768)
Q Consensus 406 id~~~~~~~~~~~~i~lIDTPGh~----~f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l-- 477 (768)
. ...++.++||||||.. ...... +.....++-.+||+||+.+ .....+.+......
T Consensus 259 -----~--~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~---------~~~l~~i~~~f~~~~~ 322 (767)
T PRK14723 259 -----A--ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH---------GDTLNEVVHAYRHGAG 322 (767)
T ss_pred -----H--HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc---------HHHHHHHHHHHhhccc
Confidence 0 1245689999999922 222222 2223457889999999853 12223333222222
Q ss_pred -CCCeEEEEEecccccc
Q 004202 478 -GVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 478 -gip~iIVVvNKmDlv~ 493 (768)
++. -+|+||+|-..
T Consensus 323 ~~i~--glIlTKLDEt~ 337 (767)
T PRK14723 323 EDVD--GCIITKLDEAT 337 (767)
T ss_pred CCCC--EEEEeccCCCC
Confidence 454 46799999763
No 422
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.37 E-value=0.001 Score=66.21 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=49.7
Q ss_pred CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004202 416 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
..+.++|+|||+... ......+..+|.+|+|+...... ...+.+.+..+...+++ +.+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~--------~~~~~~~~~~l~~~~~~-~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSG--------LHDLERAVELVRHFGIP-VGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCccc--------HHHHHHHHHHHHHcCCC-EEEEEeCCCCC
Confidence 578999999996532 24455667899999999987542 23556667777788888 68999999964
No 423
>PRK13796 GTPase YqeH; Provisional
Probab=97.37 E-value=0.00022 Score=79.69 Aligned_cols=61 Identities=26% Similarity=0.331 Sum_probs=42.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
.++.++|.+|+|||||+|+|+..... . .+.....+.+|+|.+.....+.. ..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~-----------------~--------~~~~~~s~~pGTT~~~~~~~l~~---~~ 212 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITG-----------------E--------KDVITTSRFPGTTLDKIEIPLDD---GS 212 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccC-----------------c--------cceEEecCCCCccceeEEEEcCC---Cc
Confidence 37999999999999999999953210 0 01112345589999877655532 25
Q ss_pred EEEeCCCcc
Q 004202 421 VVLDSPGHK 429 (768)
Q Consensus 421 ~lIDTPGh~ 429 (768)
.|+||||..
T Consensus 213 ~l~DTPGi~ 221 (365)
T PRK13796 213 FLYDTPGII 221 (365)
T ss_pred EEEECCCcc
Confidence 899999963
No 424
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.0013 Score=75.81 Aligned_cols=130 Identities=22% Similarity=0.283 Sum_probs=67.1
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh----Cc-----cchhh-----hhHHHHHHhhhCCCccchhhccccchhhhccCeE
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLL----GR-----ITQKQ-----MHKYEKEAKLQGKGSFAYAWALDESAEERERGIT 405 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~----~~-----i~~~~-----~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiT 405 (768)
...|+++|..|+||||++..|.... +. +..+. .+++..-+...|...+.. .+ .
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~---~~--------~-- 322 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAV---KD--------A-- 322 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeecc---CC--------c--
Confidence 3579999999999999999998643 11 11111 122222222222111000 00 0
Q ss_pred EEEEEEEEeeCCeEEEEEeCCCccchHH---H---HHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCC
Q 004202 406 MTVAVAYFDSKNYHVVVLDSPGHKDFVP---N---MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 479 (768)
Q Consensus 406 id~~~~~~~~~~~~i~lIDTPGh~~f~~---~---~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgi 479 (768)
.+.........++.+.+|||+|...... . ++.....+.-.+||+|++.+ .....+.+......++
T Consensus 323 ~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~---------~~~l~~i~~~f~~~~~ 393 (484)
T PRK06995 323 ADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH---------GDTLNEVVQAYRGPGL 393 (484)
T ss_pred hhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc---------HHHHHHHHHHhccCCC
Confidence 0000011233566799999999332211 1 12222224458899999865 1233344444445555
Q ss_pred CeEEEEEecccccc
Q 004202 480 DQLIVAVNKMDAVQ 493 (768)
Q Consensus 480 p~iIVVvNKmDlv~ 493 (768)
. -+++||+|-..
T Consensus 394 ~--g~IlTKlDet~ 405 (484)
T PRK06995 394 A--GCILTKLDEAA 405 (484)
T ss_pred C--EEEEeCCCCcc
Confidence 5 46789999753
No 425
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.36 E-value=0.00066 Score=70.34 Aligned_cols=66 Identities=27% Similarity=0.458 Sum_probs=49.3
Q ss_pred CCeEEEEEeC-CCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004202 416 KNYHVVVLDS-PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 416 ~~~~i~lIDT-PGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
+.+.++++|| +|.+-|-+-+ ...+|++|.|+|.+... ....++.-.++..+|++++.+|+||+|-.
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~s--------l~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKS--------LRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHH--------HHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 3478999998 4555554433 45699999999998532 24556677888899999999999999953
No 426
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.00087 Score=77.42 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.-.|+|+|..|+||||++..|...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999853
No 427
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.34 E-value=0.00058 Score=76.25 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=59.5
Q ss_pred ccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHh
Q 004202 428 HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 507 (768)
Q Consensus 428 h~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~ 507 (768)
.++|...+......++++++|+|+.+.. .....+....+ .+.| +++|+||+|+.... ...+.+.+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~--~~~p-iilV~NK~DLl~k~-~~~~~~~~~l~ 117 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFV--GGNP-VLLVGNKIDLLPKS-VNLSKIKEWMK 117 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHh--CCCC-EEEEEEchhhCCCC-CCHHHHHHHHH
Confidence 4566665555556899999999987531 11222222222 1445 89999999997532 22334555555
Q ss_pred HHHhhcCCCCCCCcEEEeecccCCCccc
Q 004202 508 TFLRSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 508 ~~lk~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
++++..++.. ..++++||++|.|+.+
T Consensus 118 ~~~k~~g~~~--~~i~~vSAk~g~gv~e 143 (360)
T TIGR03597 118 KRAKELGLKP--VDIILVSAKKGNGIDE 143 (360)
T ss_pred HHHHHcCCCc--CcEEEecCCCCCCHHH
Confidence 5666666531 2479999999999976
No 428
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.31 E-value=0.00032 Score=78.28 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=66.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
.+|+++|.+|+|||||+|+|+....... +.......+|+|.+.....+ +..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~-------------------------~~~~~s~~pgtT~~~~~~~~---~~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK-------------------------DVITTSPFPGTTLDLIEIPL---DDGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc-------------------------ceeeecCCCCeEeeEEEEEe---CCCC
Confidence 4799999999999999999995322100 01122344889988664443 2346
Q ss_pred EEEeCCCccchH--HHHH-----Hh---cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 421 VVLDSPGHKDFV--PNMI-----SG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 421 ~lIDTPGh~~f~--~~~i-----~g---~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
.|+||||....- ..++ .. -.......+.++..+..|-.++..+. .+..... .+.+.++|-+
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d--------~~~~~~~-~~~~~~~~~~ 277 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFD--------YLKGEKT-SFTFYVSNEL 277 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEE--------EecCCce-EEEEEccCCc
Confidence 799999954321 1111 11 12356677778877765554443321 1111122 2566667766
Q ss_pred ccc
Q 004202 491 AVQ 493 (768)
Q Consensus 491 lv~ 493 (768)
.+.
T Consensus 278 ~~h 280 (360)
T TIGR03597 278 NIH 280 (360)
T ss_pred eeE
Confidence 553
No 429
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.29 E-value=0.00033 Score=75.76 Aligned_cols=65 Identities=28% Similarity=0.337 Sum_probs=40.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
..++++|++|+|||||+|+|++........ . .....+.+++|.......+... .
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~----------------v-------~~~~~~g~~tT~~~~~~~~~~~---~ 215 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGE----------------I-------SEKLGRGRHTTTHRELFPLPGG---G 215 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccc----------------e-------eccCCCCCcccceEEEEEcCCC---C
Confidence 479999999999999999999542211000 0 0011233456666655554322 3
Q ss_pred EEEeCCCccch
Q 004202 421 VVLDSPGHKDF 431 (768)
Q Consensus 421 ~lIDTPGh~~f 431 (768)
.|+||||..+|
T Consensus 216 ~liDtPG~~~~ 226 (287)
T cd01854 216 LLIDTPGFREF 226 (287)
T ss_pred EEEECCCCCcc
Confidence 79999998765
No 430
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.24 E-value=0.0024 Score=75.61 Aligned_cols=178 Identities=17% Similarity=0.279 Sum_probs=124.5
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEe-cccccccchhh
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDR 498 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvN-KmDlv~~s~e~ 498 (768)
++=-|+-|..+-+...+..+...+.-+=|+.+.-| +.++..+.++...+. +|+.+| |++.
T Consensus 389 iikad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG----------~i~~~Dv~~a~~~~a--~i~~Fnv~~~~------- 449 (587)
T TIGR00487 389 ILKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVG----------GITETDISLASASNA--IIIGFNVRPDA------- 449 (587)
T ss_pred EEEeCCcchHHHHHHHHHhhcccCCeEEEEEeecC----------CCchhhHHHHHhcCC--EEEEEecCCCH-------
Confidence 34468999888899999888888888889988866 467777777777763 577776 3332
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh----hccCCCCCCCCCCceeeeE
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI----DSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L----~~l~~~~~~~~~plr~~I~ 574 (768)
....+.+..+ +.++.- .=|. .|++.+ ..+.++......--..-|.
T Consensus 450 ------~~~~~a~~~~-----v~i~~~-----~iIY---------------~l~d~~~~~~~~~~~~~~~~~~~g~a~v~ 498 (587)
T TIGR00487 450 ------TAKNVAEAEN-----VDIRYY-----SVIY---------------KLIDEIRAAMKGMLDPEYEEEIIGQAEVR 498 (587)
T ss_pred ------HHHHHHHHcC-----CeEEEe-----ChHH---------------HHHHHHHHHHHhccCcceeeEeeeeEEEE
Confidence 1122222223 222211 1111 144433 3333333222223345577
Q ss_pred eEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCe---eeEEEeeeecccccceeccCCceEEEecccccccccCCcccc
Q 004202 575 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 575 dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
.+|+.+ .|.+ +..+|..|+|+.|..+.+...+. ..+|.||+++..+++++..|+-|+|.+.+. .+++.||+|-
T Consensus 499 ~vf~~~~~~~i-aG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~ 575 (587)
T TIGR00487 499 QVFNVPKIGNI-AGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIE 575 (587)
T ss_pred EEEecCCCCEE-EEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEE
Confidence 899987 7887 78899999999999999999875 468999999999999999999999999875 6788999884
No 431
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.23 E-value=0.0017 Score=71.31 Aligned_cols=92 Identities=16% Similarity=0.243 Sum_probs=51.7
Q ss_pred CeEEEEEeCCCccchHHHH--------HHhcccCCEEEEEEecCCCccccccccchhhhHH-HHHHHHHcCCCeEEEEEe
Q 004202 417 NYHVVVLDSPGHKDFVPNM--------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE-HAQLIRSFGVDQLIVAVN 487 (768)
Q Consensus 417 ~~~i~lIDTPGh~~f~~~~--------i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e-~l~ll~~lgip~iIVVvN 487 (768)
....++|.|.|..+=.+.. +......|.+|-||||.+.. ..... .-....++..-. +|++|
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~---------~~~~~~~~~~~~Qia~AD-~ivlN 153 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFL---------EGLDAIAELAEDQLAFAD-VIVLN 153 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhh---------hhHHHHHHHHHHHHHhCc-EEEEe
Confidence 3678999999955522221 22334578899999998742 11110 111112222222 68999
Q ss_pred cccccccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeec
Q 004202 488 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA 527 (768)
Q Consensus 488 KmDlv~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA 527 (768)
|.|+++. +..+.+...++++ + +..+++..+.
T Consensus 154 K~Dlv~~--~~l~~l~~~l~~l----n---p~A~i~~~~~ 184 (323)
T COG0523 154 KTDLVDA--EELEALEARLRKL----N---PRARIIETSY 184 (323)
T ss_pred cccCCCH--HHHHHHHHHHHHh----C---CCCeEEEccc
Confidence 9999973 3455555555544 2 3456676665
No 432
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.23 E-value=0.00051 Score=66.86 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
..+++++|.+|+|||||+++|.+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36789999999999999999984
No 433
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.23 E-value=0.0011 Score=71.84 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=52.6
Q ss_pred cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCC
Q 004202 439 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 518 (768)
Q Consensus 439 ~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~ 518 (768)
+..+|.+|+|+|+..+.+. .....+.+..+...++| +++|+||+|+.+. ... .. ........+
T Consensus 76 ~anvD~vllV~d~~~p~~s------~~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~--~~~---~~-~~~~~~~~g---- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFN------PRLLDRYLVAAEAAGIE-PVIVLTKADLLDD--EEE---EL-ELVEALALG---- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCCC------HHHHHHHHHHHHHcCCC-EEEEEEHHHCCCh--HHH---HH-HHHHHHhCC----
Confidence 6789999999999876311 12334456666777888 7899999999752 111 11 111112233
Q ss_pred CCcEEEeecccCCCccc
Q 004202 519 SLTWIPLSALENQNLVT 535 (768)
Q Consensus 519 ~i~~IpVSA~tG~gI~e 535 (768)
.+++++||++|.|+.+
T Consensus 139 -~~v~~vSA~~g~gi~~ 154 (287)
T cd01854 139 -YPVLAVSAKTGEGLDE 154 (287)
T ss_pred -CeEEEEECCCCccHHH
Confidence 4789999999999865
No 434
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.22 E-value=0.0011 Score=59.56 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=52.1
Q ss_pred eeeEeEEeeC--CCcEEEEEEEecCcccCCCEEEEcc---------CCeeeEEEeeeec----ccccceeccCCceEEEe
Q 004202 571 MPICDVLKSQ--HGQVSACGKLEAGALRSGLKVLVLP---------SGEVGTVHSIERD----SQSCSVARAGDNIAVSL 635 (768)
Q Consensus 571 ~~I~dv~~~~--~G~V~v~G~V~sG~L~~Gd~v~i~P---------~~~~~~VksI~~~----~~~v~~A~aGd~V~l~L 635 (768)
+.|..+...+ .|.+ +++||.+|+|+.|+.|++.. .....+|..|... ..++++|.|||+|+|.
T Consensus 3 ~~v~Ki~~~~~~~g~l-a~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~- 80 (93)
T cd03700 3 MYVTKMVPTPDKGGFI-AFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV- 80 (93)
T ss_pred EEEEeCeECCCCCEEE-EEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE-
Confidence 3455555555 5666 89999999999999998765 2234667677542 4688999999999886
Q ss_pred cccccccccCCccc
Q 004202 636 QGIDVSRVMSGGVL 649 (768)
Q Consensus 636 ~gi~~~~i~rG~VL 649 (768)
|+ .+++.|++.
T Consensus 81 -g~--~~~~~g~~~ 91 (93)
T cd03700 81 -GL--DQLKSGTTA 91 (93)
T ss_pred -CC--ccCceEeEe
Confidence 54 235566654
No 435
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.15 E-value=0.00063 Score=72.98 Aligned_cols=64 Identities=28% Similarity=0.325 Sum_probs=47.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
...+|.|+|-+|+|||||+|++........ .......++|+|+.+....--.+..
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~-------------------------k~a~vG~~pGVT~~V~~~iri~~rp 196 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKK-------------------------KAARVGAEPGVTRRVSERIRISHRP 196 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhc-------------------------cceeccCCCCceeeehhheEeccCC
Confidence 568999999999999999999874322211 0112234589999988765555677
Q ss_pred EEEEEeCCC
Q 004202 419 HVVVLDSPG 427 (768)
Q Consensus 419 ~i~lIDTPG 427 (768)
.+.++||||
T Consensus 197 ~vy~iDTPG 205 (335)
T KOG2485|consen 197 PVYLIDTPG 205 (335)
T ss_pred ceEEecCCC
Confidence 799999999
No 436
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.14 E-value=0.0021 Score=57.83 Aligned_cols=67 Identities=24% Similarity=0.371 Sum_probs=48.0
Q ss_pred eeeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCC---------eeeEEEeeeec----ccccceeccCCceEEEec
Q 004202 571 MPICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSG---------EVGTVHSIERD----SQSCSVARAGDNIAVSLQ 636 (768)
Q Consensus 571 ~~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~---------~~~~VksI~~~----~~~v~~A~aGd~V~l~L~ 636 (768)
..|+.+...+ .|...++|||.+|+|+.||.|++.-.+ ...+|..|... ..++++|.|||+|++.
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~-- 80 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK-- 80 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE--
Confidence 4566666666 534338999999999999999874211 23566676653 4689999999999886
Q ss_pred ccc
Q 004202 637 GID 639 (768)
Q Consensus 637 gi~ 639 (768)
|++
T Consensus 81 gl~ 83 (94)
T cd04090 81 GID 83 (94)
T ss_pred Ccc
Confidence 553
No 437
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.14 E-value=0.0035 Score=66.85 Aligned_cols=87 Identities=16% Similarity=0.339 Sum_probs=48.6
Q ss_pred CCeEEEEEeCCCccc--------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhh-HHHHHHHHHcCCCeEEEEE
Q 004202 416 KNYHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVDQLIVAV 486 (768)
Q Consensus 416 ~~~~i~lIDTPGh~~--------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt-~e~l~ll~~lgip~iIVVv 486 (768)
+.+..+++.|.|..+ |...-+..-...|++|-||||.+..+.-.=....+.. +.+-+++.+ . -+++
T Consensus 144 GkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~A---D--~II~ 218 (391)
T KOG2743|consen 144 GKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALA---D--RIIM 218 (391)
T ss_pred CCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhh---h--eeee
Confidence 346789999999665 2222233334589999999998642110000001111 112222222 2 2468
Q ss_pred ecccccccchhhHHHHHHHHhHH
Q 004202 487 NKMDAVQYSKDRFDSIKVQLGTF 509 (768)
Q Consensus 487 NKmDlv~~s~e~~~~i~~el~~~ 509 (768)
||.|++. ++.+..+++.++.+
T Consensus 219 NKtDli~--~e~~~~l~q~I~~I 239 (391)
T KOG2743|consen 219 NKTDLVS--EEEVKKLRQRIRSI 239 (391)
T ss_pred ccccccC--HHHHHHHHHHHHHh
Confidence 9999996 56666666666554
No 438
>PRK12288 GTPase RsgA; Reviewed
Probab=97.10 E-value=0.0019 Score=71.71 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=52.5
Q ss_pred cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCC
Q 004202 439 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 518 (768)
Q Consensus 439 ~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~ 518 (768)
++++|.+++|.+.... + .+ ....+.+..+...+++ +++|+||+|+++. +....+ .+....+..++
T Consensus 118 aANvD~vlIV~s~~p~-~--s~----~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~--~~~~~~-~~~~~~y~~~g---- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPE-L--SL----NIIDRYLVACETLGIE-PLIVLNKIDLLDD--EGRAFV-NEQLDIYRNIG---- 182 (347)
T ss_pred EEEccEEEEEEeCCCC-C--CH----HHHHHHHHHHHhcCCC-EEEEEECccCCCc--HHHHHH-HHHHHHHHhCC----
Confidence 6789999999887532 1 11 2344455566777888 6899999999753 211112 22222333444
Q ss_pred CCcEEEeecccCCCccc
Q 004202 519 SLTWIPLSALENQNLVT 535 (768)
Q Consensus 519 ~i~~IpVSA~tG~gI~e 535 (768)
++++++||++|+|+.+
T Consensus 183 -~~v~~vSA~tg~Gide 198 (347)
T PRK12288 183 -YRVLMVSSHTGEGLEE 198 (347)
T ss_pred -CeEEEEeCCCCcCHHH
Confidence 4789999999999965
No 439
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.08 E-value=0.006 Score=74.31 Aligned_cols=178 Identities=20% Similarity=0.307 Sum_probs=124.4
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEe-cccccccchhh
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDR 498 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvN-KmDlv~~s~e~ 498 (768)
++=-|+-|..+-+...+..+..-+.-+=|+.+.-| ..+..-+.++...+. +|+.+| |++.
T Consensus 591 iikad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG----------~it~~Dv~la~~~~a--~ii~Fnv~~~~------- 651 (787)
T PRK05306 591 IIKADVQGSVEALKDSLEKLSTDEVKVNIIHSGVG----------AITESDVTLAAASNA--IIIGFNVRPDA------- 651 (787)
T ss_pred EEEeCCcchHHHHHHHHHhhcccCCceEEEeeccC----------CCCHHHHHHHHhcCC--EEEEEcCCCCH-------
Confidence 33468999999999999999888888999988866 356666677766653 577776 3332
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh----hccCCCCCCCCCCceeeeE
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI----DSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L----~~l~~~~~~~~~plr~~I~ 574 (768)
....+.+..+ +.++.-+ =|. .|++.+ ..+..|.....---..-|.
T Consensus 652 ------~~~~~a~~~~-----v~i~~~~-----iIY---------------~l~d~~~~~~~~~l~~~~~e~~~g~a~v~ 700 (787)
T PRK05306 652 ------KARKLAEQEG-----VDIRYYS-----IIY---------------DLIDDVKAAMSGMLEPEYEEEIIGQAEVR 700 (787)
T ss_pred ------HHHHHHHHcC-----CEEEEeC-----hHH---------------HHHHHHHHHHhhccCchhheeeeeeEEEE
Confidence 1112222222 2222111 111 144433 3333333222223345678
Q ss_pred eEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCe---eeEEEeeeecccccceeccCCceEEEecccccccccCCcccc
Q 004202 575 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 575 dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
.+|+++ .|.+ +..+|..|.|+.|..+.+...+. ..+|.||+++..++.++..|+-|+|.|.+. .+++.||+|-
T Consensus 701 ~vF~~~k~~~i-aGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie 777 (787)
T PRK05306 701 EVFKVSKVGTI-AGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIE 777 (787)
T ss_pred EEEecCCCCeE-EEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEE
Confidence 999998 7988 78899999999999999999876 578999999999999999999999999876 5788999884
No 440
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.07 E-value=0.0063 Score=73.58 Aligned_cols=178 Identities=18% Similarity=0.221 Sum_probs=125.4
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEe-cccccccchhh
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDR 498 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvN-KmDlv~~s~e~ 498 (768)
++=.|+-|..+.+...+..+....+-+=|+.+.-| +.+..-+.++...+. +|+.+| +.+.
T Consensus 546 iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG----------~it~~Dv~lA~~~~a--~ii~Fnv~~~~------- 606 (742)
T CHL00189 546 IIKTDTQGSIEAIINSISQIPQKKVQLNILYASLG----------EVTETDVEFASTTNA--EILAFNTNLAP------- 606 (742)
T ss_pred EEEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecC----------CCCHHHHHHHHhcCC--EEEEeeCCCCH-------
Confidence 44579999999999999988888888889988876 467777777777764 577776 3331
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh----hccCCCCCCCCCCceeeeE
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI----DSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L----~~l~~~~~~~~~plr~~I~ 574 (768)
......+..+ +.++. ..=|. .|++.+ ..+..|.......-++-|.
T Consensus 607 ------~~~~~a~~~~-----v~i~~-----~~iIY---------------~lid~~~~~~~~~l~~~~~~~~~g~a~v~ 655 (742)
T CHL00189 607 ------GAKKAARKLN-----IIIKE-----YQVIY---------------DLLEYIEALMEDLLDPEYKKVPIGEAEVK 655 (742)
T ss_pred ------HHHHHHHHcC-----CEEEE-----eChHH---------------HHHHHHHHHHhhccCceeeeeeceeEEee
Confidence 1122222222 22221 11111 144433 3333343333334566688
Q ss_pred eEEeeCCCcEEEEEEEecCcccCCCEEEEccCCe---eeEEEeeeecccccceeccCCceEEEecccccccccCCcccc
Q 004202 575 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 575 dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
.+|.++.|.+ +..+|..|.|+.|..++++..+. ..+|.||+++..++.++..|+.|+|.|.+. .+++.||+|-
T Consensus 656 ~vF~~~k~~i-aGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie 731 (742)
T CHL00189 656 TVFPLAKRFV-AGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIH 731 (742)
T ss_pred EEEecCCCEE-EEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEE
Confidence 9999887777 77799999999999999999885 468999999999999999999999999865 5688899884
No 441
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.06 E-value=0.0047 Score=67.84 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
+.+..+|.|.-|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3456788999999999999999954
No 442
>PRK01889 GTPase RsgA; Reviewed
Probab=97.04 E-value=0.0019 Score=72.04 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=54.7
Q ss_pred cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCC
Q 004202 439 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 518 (768)
Q Consensus 439 ~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~ 518 (768)
+++.|.+++|+++..+ | + .......+..+...+++ .+||+||+||++. .+ ...+.+..+ . .
T Consensus 110 aANvD~vliV~s~~p~-~----~--~~~ldr~L~~a~~~~i~-piIVLNK~DL~~~-~~---~~~~~~~~~--~-----~ 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-F----N--LRRIERYLALAWESGAE-PVIVLTKADLCED-AE---EKIAEVEAL--A-----P 170 (356)
T ss_pred EEeCCEEEEEEecCCC-C----C--hhHHHHHHHHHHHcCCC-EEEEEEChhcCCC-HH---HHHHHHHHh--C-----C
Confidence 5789999999999643 2 1 13566777888889998 5789999999852 11 122233322 1 2
Q ss_pred CCcEEEeecccCCCccc
Q 004202 519 SLTWIPLSALENQNLVT 535 (768)
Q Consensus 519 ~i~~IpVSA~tG~gI~e 535 (768)
..+++++|+++|.|+.+
T Consensus 171 g~~Vi~vSa~~g~gl~~ 187 (356)
T PRK01889 171 GVPVLAVSALDGEGLDV 187 (356)
T ss_pred CCcEEEEECCCCccHHH
Confidence 35789999999999865
No 443
>PRK00098 GTPase RsgA; Reviewed
Probab=97.00 E-value=0.00086 Score=72.93 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
..++++|++|+|||||+|+|++.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999954
No 444
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.98 E-value=0.0059 Score=67.76 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.+..++.|.-|||||||+++|+..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 355788899999999999999854
No 445
>PRK13796 GTPase YqeH; Provisional
Probab=96.98 E-value=0.0027 Score=71.04 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=55.8
Q ss_pred HHHHHHhcccCC-EEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHH
Q 004202 432 VPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFL 510 (768)
Q Consensus 432 ~~~~i~g~~~aD-~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~l 510 (768)
+..++..+..+| ++++|||+.+. . .....+...+. -+.+ +++|+||+|+... ....+.+.+.+..+.
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~--~------~s~~~~L~~~~--~~kp-viLViNK~DLl~~-~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDF--N------GSWIPGLHRFV--GNNP-VLLVGNKADLLPK-SVKKNKVKNWLRQEA 126 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccC--C------CchhHHHHHHh--CCCC-EEEEEEchhhCCC-ccCHHHHHHHHHHHH
Confidence 345777777777 89999999763 1 11222221111 1455 8999999999752 122233444445555
Q ss_pred hhcCCCCCCCcEEEeecccCCCccc
Q 004202 511 RSCGFKDASLTWIPLSALENQNLVT 535 (768)
Q Consensus 511 k~~g~~~~~i~~IpVSA~tG~gI~e 535 (768)
+..|+.. ..++++||++|.|+.+
T Consensus 127 k~~g~~~--~~v~~vSAk~g~gI~e 149 (365)
T PRK13796 127 KELGLRP--VDVVLISAQKGHGIDE 149 (365)
T ss_pred HhcCCCc--CcEEEEECCCCCCHHH
Confidence 5556532 2579999999999966
No 446
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.97 E-value=0.0071 Score=59.60 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=46.4
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccccc
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 492 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv 492 (768)
.++|||||+.... .+...+..+|.+|+|+++.... ...+...+..+...+.+.+.+|+|+++..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s--------~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISS--------LRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcch--------HHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 7999999986443 3455577899999999987642 23444555666666777678899999864
No 447
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.94 E-value=0.00067 Score=76.83 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=44.2
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCe
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 418 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~ 418 (768)
..+.|++||++|+||||+||+|.+.... ...+.+|.|-+.....++ .
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkV------------------------------sVS~TPGkTKHFQTi~ls---~ 359 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKV------------------------------SVSSTPGKTKHFQTIFLS---P 359 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCcee------------------------------eeecCCCCcceeEEEEcC---C
Confidence 3689999999999999999999964322 234458888877776653 3
Q ss_pred EEEEEeCCCc
Q 004202 419 HVVVLDSPGH 428 (768)
Q Consensus 419 ~i~lIDTPGh 428 (768)
.+.|.|+||.
T Consensus 360 ~v~LCDCPGL 369 (562)
T KOG1424|consen 360 SVCLCDCPGL 369 (562)
T ss_pred CceecCCCCc
Confidence 6889999994
No 448
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.70 E-value=0.0068 Score=68.34 Aligned_cols=89 Identities=21% Similarity=0.224 Sum_probs=57.3
Q ss_pred cCeEEEEEEEEEee-CCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCc---cccccccchhhhHHHHHHHHH-
Q 004202 402 RGITMTVAVAYFDS-KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVGMNTAKGLTREHAQLIRS- 476 (768)
Q Consensus 402 ~GiTid~~~~~~~~-~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~---~e~~~~~~~~qt~e~l~ll~~- 476 (768)
+..|..+....|.. ++..+.|+|+.|+..-.+.|+..+...+++|+||+.+.-. +|..- .....+-+.+-..
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~---~nrl~esl~lF~~i 295 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPN---TNRLHESLNLFESI 295 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTT---SBHHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccch---HHHHHHHHHHHHHH
Confidence 34455566667777 8999999999999888888888899999999999976411 11110 0122333333322
Q ss_pred -----cCCCeEEEEEecccccc
Q 004202 477 -----FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 477 -----lgip~iIVVvNKmDlv~ 493 (768)
+.-.++||++||+|+..
T Consensus 296 ~~~~~~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 296 CNNPWFKNTPIILFLNKIDLFE 317 (389)
T ss_dssp HTSGGGTTSEEEEEEE-HHHHH
T ss_pred HhCcccccCceEEeeecHHHHH
Confidence 22234899999999863
No 449
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.69 E-value=0.0061 Score=65.79 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=60.6
Q ss_pred cccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHHHHHHHhHHHhhcCCCCC
Q 004202 439 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 518 (768)
Q Consensus 439 ~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~i~~el~~~lk~~g~~~~ 518 (768)
+...|-+|+|+.+..+.|. ..+..+.|-++...|+.+ |||+||+|+++. +.... +++......+||
T Consensus 77 v~n~d~~iiIvs~~~P~~~------~~~ldR~Lv~ae~~gi~p-vIvlnK~DL~~~--~~~~~--~~~~~~y~~~gy--- 142 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFN------TNLLDRYLVLAEAGGIEP-VIVLNKIDLLDD--EEAAV--KELLREYEDIGY--- 142 (301)
T ss_pred ccccceEEEEEeccCCCCC------HHHHHHHHHHHHHcCCcE-EEEEEccccCcc--hHHHH--HHHHHHHHhCCe---
Confidence 3448889999999988654 357778888889999984 778999999973 22222 455555556665
Q ss_pred CCcEEEeecccCCCccc
Q 004202 519 SLTWIPLSALENQNLVT 535 (768)
Q Consensus 519 ~i~~IpVSA~tG~gI~e 535 (768)
+++.+|+++++|+.+
T Consensus 143 --~v~~~s~~~~~~~~~ 157 (301)
T COG1162 143 --PVLFVSAKNGDGLEE 157 (301)
T ss_pred --eEEEecCcCcccHHH
Confidence 679999999999865
No 450
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.69 E-value=0.014 Score=53.60 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=43.7
Q ss_pred EEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC---eEEEEEec
Q 004202 419 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD---QLIVAVNK 488 (768)
Q Consensus 419 ~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip---~iIVVvNK 488 (768)
.++|+|||+..... ....+..+|.+|+|++.+... ...+.+.+..+..++.+ ++.+|+|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s--------~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPS--------IRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHH--------HHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 79999999965543 345667899999999987642 24566666777777654 67888886
No 451
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.64 E-value=0.0032 Score=64.18 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=41.4
Q ss_pred eEEEEEeCCCccc------hHHHHHHhcccCC---EEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec
Q 004202 418 YHVVVLDSPGHKD------FVPNMISGATQSD---AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 488 (768)
Q Consensus 418 ~~i~lIDTPGh~~------f~~~~i~g~~~aD---~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK 488 (768)
..+.++|+||+.+ .+++.++.+.+-+ .+++++|+.=-+ .....-.-....+...-.+.+|+ |=|++|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~v---D~~KfiSG~lsAlsAMi~lE~P~-INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLV---DSTKFISGCLSALSAMISLEVPH-INVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhh---hHHHHHHHHHHHHHHHHHhcCcc-hhhhhH
Confidence 4689999999554 5677777777643 455666653100 00000001111223334568884 789999
Q ss_pred ccccc
Q 004202 489 MDAVQ 493 (768)
Q Consensus 489 mDlv~ 493 (768)
||++.
T Consensus 174 MDLlk 178 (273)
T KOG1534|consen 174 MDLLK 178 (273)
T ss_pred HHHhh
Confidence 99985
No 452
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.62 E-value=0.013 Score=60.85 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=40.9
Q ss_pred CeEEEEEeCCCccc------hHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEeccc
Q 004202 417 NYHVVVLDSPGHKD------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 490 (768)
Q Consensus 417 ~~~i~lIDTPGh~~------f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmD 490 (768)
...+.|+|+||+.+ -....++.+..-|+-+.+|.-.+..+-..=...-....-.+.-...+..|| |=|+.|+|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melph-VNvlSK~D 174 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPH-VNVLSKAD 174 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccc-hhhhhHhH
Confidence 46789999999555 455567777777755554432222111100000011111222233467786 67899999
Q ss_pred ccc
Q 004202 491 AVQ 493 (768)
Q Consensus 491 lv~ 493 (768)
+..
T Consensus 175 l~~ 177 (290)
T KOG1533|consen 175 LLK 177 (290)
T ss_pred HHH
Confidence 874
No 453
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.003 Score=65.42 Aligned_cols=152 Identities=21% Similarity=0.247 Sum_probs=93.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEE
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 420 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i 420 (768)
++|.++|+--+|||++-....+...-- +..-.|....+|.+... ..=.++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn--------------------------eTlflESTski~~d~is----~sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN--------------------------ETLFLESTSKITRDHIS----NSFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC--------------------------ceeEeeccCcccHhhhh----hhhcce
Confidence 569999999999999987776432110 11111222222222111 112357
Q ss_pred EEEeCCCccchHHHH---HHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCC---eEEEEEeccccccc
Q 004202 421 VVLDSPGHKDFVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD---QLIVAVNKMDAVQY 494 (768)
Q Consensus 421 ~lIDTPGh~~f~~~~---i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip---~iIVVvNKmDlv~~ 494 (768)
.+||-||+-+|+... ..-.++.-++|+||||-+.- ..+.++-|+..+++..+. .+=|.+-|.|-+..
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-------~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-------MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHH-------HHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 899999988876544 23356788999999997642 235667777777777654 36688999997642
Q ss_pred c--hhhHHHHHHHHhHHHhhcCCCCCCCcEEEeeccc
Q 004202 495 S--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 529 (768)
Q Consensus 495 s--~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~t 529 (768)
+ -+.-..+.++...-|...|...-.+.|..+|...
T Consensus 151 d~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 151 DFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD 187 (347)
T ss_pred hhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc
Confidence 1 1222345556666666777765556666666554
No 454
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.50 E-value=0.032 Score=61.69 Aligned_cols=89 Identities=20% Similarity=0.173 Sum_probs=61.1
Q ss_pred ccCeEEEEEEEEEeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCc---cccccccchhhhHHHHHHHHH-
Q 004202 401 ERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVGMNTAKGLTREHAQLIRS- 476 (768)
Q Consensus 401 e~GiTid~~~~~~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~---~e~~~~~~~~qt~e~l~ll~~- 476 (768)
.|-.|.-+....|..++..+-++|.+|+.-=.+.++...-.++++|+||+.++-. +|... .-...|-+.+-..
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~---~NRM~eS~~LF~sI 254 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDET---TNRMHESLKLFESI 254 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccc---hhHHHHHHHHHHHH
Confidence 3444566677778889999999999999988888999999999999999977521 11111 1112222322222
Q ss_pred ------cCCCeEEEEEecccccc
Q 004202 477 ------FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 477 ------lgip~iIVVvNKmDlv~ 493 (768)
...+ +|+.+||+|+..
T Consensus 255 ~n~~~F~~ts-iiLFLNK~DLFe 276 (354)
T KOG0082|consen 255 CNNKWFANTS-IILFLNKKDLFE 276 (354)
T ss_pred hcCcccccCc-EEEEeecHHHHH
Confidence 1234 899999999873
No 455
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.45 E-value=0.033 Score=53.50 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=43.6
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cCCCeEEEEEeccccc
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAV 492 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVvNKmDlv 492 (768)
+.++|+|+|+... ......+..+|.+++|++++... ...+...+..+.. .+..++.+|+|+++..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s--------~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTS--------ITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhH--------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 7899999998543 33356678899999999987532 1233444444433 3344578999999743
No 456
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.051 Score=62.50 Aligned_cols=178 Identities=19% Similarity=0.311 Sum_probs=115.4
Q ss_pred EEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEec-ccccccchhh
Q 004202 420 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK-MDAVQYSKDR 498 (768)
Q Consensus 420 i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNK-mDlv~~s~e~ 498 (768)
++=-||-|.-+.+...+..+.....-+-|+-+.-| ..++.-+.++...+. +|+.+|= .+ .+
T Consensus 310 iiKaDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG----------~ite~DV~lA~as~a--vIigFnV~~~-----~~- 371 (509)
T COG0532 310 ILKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVG----------GITESDVMLAAASDA--VIIGFNVRVD-----PE- 371 (509)
T ss_pred EEEEcccchHHHHHHHHHhcCCCceEEEEEEeecC----------CCChhhHHHHHhcCC--EEEEEecCCC-----HH-
Confidence 33468888877777777777777777777776655 345555555655552 6677663 22 11
Q ss_pred HHHHHHHHhHHHhhcCCCCCCCcEEEeecccCCCcccCCCCcccccccCCcchhhhh----hccCCCCCCCCCCceeeeE
Q 004202 499 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSWYKGPCLLDAI----DSLRPPPREFSKPLLMPIC 574 (768)
Q Consensus 499 ~~~i~~el~~~lk~~g~~~~~i~~IpVSA~tG~gI~e~~~~~~~~~wy~G~~LLe~L----~~l~~~~~~~~~plr~~I~ 574 (768)
..++.+..+ +.++. ..=|. .|++.+ ..+..|.....---..-+.
T Consensus 372 -------a~~~ae~~~-----V~I~~-----~~iIY---------------~lied~~~~~~g~l~p~~~e~~~g~~~~r 419 (509)
T COG0532 372 -------ARRLAESEG-----VKIRY-----YDVIY---------------KLIEDVEAAMKGMLEPEKKERVIGLAEVR 419 (509)
T ss_pred -------HHHHHHhcC-----CcEEE-----cchHH---------------HHHHHHHHHHHhccchhhhhhcccceEEE
Confidence 111222222 11111 00011 133332 3333333222222334567
Q ss_pred eEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCe---eeEEEeeeecccccceeccCCceEEEecccccccccCCcccc
Q 004202 575 DVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE---VGTVHSIERDSQSCSVARAGDNIAVSLQGIDVSRVMSGGVLC 650 (768)
Q Consensus 575 dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~~~i~rG~VL~ 650 (768)
.+|..+ .|.+ +..+|..|.++.|..+.+...+. ..+|.+|+++.+++.++.+|+.|+|.+++ ..+++.||+|-
T Consensus 420 ~v~~~~k~g~I-aG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~gD~le 496 (509)
T COG0532 420 AVFKLPKVGAI-AGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEGDILE 496 (509)
T ss_pred EEEEcCCCCeE-EEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCCCCEEE
Confidence 888888 8988 78899999999999999986654 37999999999999999999999999987 57788899874
No 457
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.32 E-value=0.0027 Score=70.14 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=44.6
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEee
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 415 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~ 415 (768)
.-++.++|+|+|.+|+||||+||.|...... ..-..+|+|..+....+
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C------------------------------~vg~~pGvT~smqeV~L-- 295 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKAC------------------------------NVGNVPGVTRSMQEVKL-- 295 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccc------------------------------cCCCCccchhhhhheec--
Confidence 4467899999999999999999999953221 11123777777665553
Q ss_pred CCeEEEEEeCCCc
Q 004202 416 KNYHVVVLDSPGH 428 (768)
Q Consensus 416 ~~~~i~lIDTPGh 428 (768)
+..|.|+|.||.
T Consensus 296 -dk~i~llDsPgi 307 (435)
T KOG2484|consen 296 -DKKIRLLDSPGI 307 (435)
T ss_pred -cCCceeccCCce
Confidence 457999999994
No 458
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.28 E-value=0.018 Score=65.28 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=25.0
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHhhCcc
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFLLGRI 367 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i 367 (768)
...+|+|+|+.++|||||+++|....+..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 45789999999999999999999775553
No 459
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=96.26 E-value=0.045 Score=48.74 Aligned_cols=60 Identities=32% Similarity=0.520 Sum_probs=44.4
Q ss_pred CCccCCCeeEEEEeeeeEEEEEEEEEeecccccCcccccCCcccCCCCeEEEEEEeCceEEeecccccCCcceEEE-Ee-
Q 004202 673 PPILIGSQLECHIHHAKEAARIVKITSLLDTKTGKVTKKSPRCLTAKQSAIVEVALQEPVCVEEFSNCRALGRAFL-RS- 750 (768)
Q Consensus 673 ~pI~~G~~~~lhig~~~~~a~I~~I~~~lD~~tg~~~k~~p~~L~~gd~a~v~l~l~~pI~~e~~~~~~~lGRfIL-R~- 750 (768)
.||..|..+++.+|+....++|..+.. + .+++.|.+|+|.+..+ |..| |+
T Consensus 25 ~~i~~~E~LmlnIGsatt~G~V~~~k~--------------------d--~~~v~L~~Pvc~~~g~------rvaiSRri 76 (88)
T PF09173_consen 25 EPIKKGEVLMLNIGSATTGGVVTSVKK--------------------D--MAEVELKKPVCAEKGE------RVAISRRI 76 (88)
T ss_dssp ----TTEEEEEEETTEEEEEEEEEEET--------------------T--EEEEEEEEEEE-STTS------EEEEEEEE
T ss_pred ccCCCCCEEEEEEccccccEEEEEEEC--------------------C--EEEEEecCCeEcCcCC------eeeeehhc
Confidence 689999999999999999999987731 1 4667788999999876 7777 43
Q ss_pred CC--cEEEEEEE
Q 004202 751 SG--RTIAVGIV 760 (768)
Q Consensus 751 ~g--~TvgvG~V 760 (768)
++ |.+|+|.|
T Consensus 77 ~~rWRLIG~G~I 88 (88)
T PF09173_consen 77 GNRWRLIGWGII 88 (88)
T ss_dssp TTSEEEEEEEEE
T ss_pred cCeEEEEEEEeC
Confidence 33 79999986
No 460
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.019 Score=64.83 Aligned_cols=145 Identities=17% Similarity=0.281 Sum_probs=83.2
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhh------------CccchhhhhHHHHHHhhhCCCccchhhccccchhhhccC
Q 004202 336 DRMTQLNLAIVGHVDSGKSTLSGRLLFLL------------GRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG 403 (768)
Q Consensus 336 ~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~------------~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~G 403 (768)
..+++..|++||-.|+||||-+..|.+++ ..+++..+++++.-..+.. -+++..-+--+.|
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~-------~l~~~~v~lfekG 446 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLS-------ALHGTMVELFEKG 446 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHH-------HhccchhHHHhhh
Confidence 44588999999999999999999998873 5566666666554333221 0111000000111
Q ss_pred eEEEEE------EEEEeeCCeEEEEEeCCCccc----hHHHH--HHhcccCCEEEEEEecCCCccccccccchhhhHHHH
Q 004202 404 ITMTVA------VAYFDSKNYHVVVLDSPGHKD----FVPNM--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 471 (768)
Q Consensus 404 iTid~~------~~~~~~~~~~i~lIDTPGh~~----f~~~~--i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l 471 (768)
-.-+.+ ..+-...++.++||||+|... ++... +..+..+|.+|+|=-|--|. +. -.|.+..-
T Consensus 447 Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~-----ds-v~q~~~fn 520 (587)
T KOG0781|consen 447 YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN-----DS-VDQLKKFN 520 (587)
T ss_pred cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc-----HH-HHHHHHHH
Confidence 111100 001123678999999999332 22222 23356799999997776542 11 24555555
Q ss_pred HHHHHcCCCeE--EEEEecccccc
Q 004202 472 QLIRSFGVDQL--IVAVNKMDAVQ 493 (768)
Q Consensus 472 ~ll~~lgip~i--IVVvNKmDlv~ 493 (768)
..+.....|+. -++++|+|.++
T Consensus 521 ~al~~~~~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 521 RALADHSTPRLIDGILLTKFDTVD 544 (587)
T ss_pred HHHhcCCCccccceEEEEeccchh
Confidence 54544443432 46899999986
No 461
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.17 E-value=0.017 Score=63.51 Aligned_cols=86 Identities=23% Similarity=0.235 Sum_probs=59.3
Q ss_pred eEEEEEEEEEeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCCc---cccccccchhhhHHHHHHHHH----
Q 004202 404 ITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEVGMNTAKGLTREHAQLIRS---- 476 (768)
Q Consensus 404 iTid~~~~~~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g~---~e~~~~~~~~qt~e~l~ll~~---- 476 (768)
.|..+....|..++..+.++|++|+....+.+......++++|+|||.++-. .|... .....+.+.+...
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~---~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES---TNRMQESLNLFDSICNS 223 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc---chHHHHHHHHHHHHHhC
Confidence 3444555567778899999999999999999999999999999999988521 01100 0122233322222
Q ss_pred ---cCCCeEEEEEecccccc
Q 004202 477 ---FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 477 ---lgip~iIVVvNKmDlv~ 493 (768)
.++| +++++||.|+..
T Consensus 224 ~~~~~~p-ill~~NK~D~f~ 242 (317)
T cd00066 224 RWFANTS-IILFLNKKDLFE 242 (317)
T ss_pred ccccCCC-EEEEccChHHHH
Confidence 3566 899999999863
No 462
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.051 Score=59.23 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHHh
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
....|+++|..|+|||||++.|...
T Consensus 187 df~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhcc
Confidence 4567899999999999999999854
No 463
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.14 E-value=0.13 Score=57.90 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhh
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLL 364 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~ 364 (768)
.+=|++||+|-.||||++.++....
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~ 41 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELL 41 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHh
Confidence 4679999999999999999998543
No 464
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.06 E-value=0.056 Score=46.86 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=46.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEEeeCCeEEEE
Q 004202 343 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 422 (768)
Q Consensus 343 VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~~~~~~~i~l 422 (768)
+++.|..|+||||+...|...+.. .|..+ ..++ .+++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----------------------------------~g~~v----~~~~----d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----------------------------------RGKRV----LLID----DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----------------------------------CCCeE----EEEC----CEEE
Confidence 678899999999999999843211 11111 0011 7999
Q ss_pred EeCCCccchHHH-HHHhcccCCEEEEEEecCCC
Q 004202 423 LDSPGHKDFVPN-MISGATQSDAAILVIDASVG 454 (768)
Q Consensus 423 IDTPGh~~f~~~-~i~g~~~aD~aILVVDA~~g 454 (768)
+|+|+....... ....+..+|.++++++....
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 999996554322 24556789999999998764
No 465
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.00 E-value=0.02 Score=73.38 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=17.4
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 004202 341 LNLAIVGHVDSGKSTLSGRL 360 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~L 360 (768)
+=.+|+|.+|+|||||+.+-
T Consensus 112 PWYlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC
Confidence 44789999999999999876
No 466
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=95.99 E-value=0.028 Score=62.49 Aligned_cols=90 Identities=17% Similarity=0.079 Sum_probs=59.6
Q ss_pred CeEEEEEEEEEeeCCeEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCC---ccccccccchhhhHHHHHHHHH---
Q 004202 403 GITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SFEVGMNTAKGLTREHAQLIRS--- 476 (768)
Q Consensus 403 GiTid~~~~~~~~~~~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g---~~e~~~~~~~~qt~e~l~ll~~--- 476 (768)
-.|..+....|..++..+.+||..|+..+.+.|......++++|+|||.++- .+|..-........+.+..+..
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 3444455566777889999999999999999999999999999999999852 1111000001122222221111
Q ss_pred -cCCCeEEEEEecccccc
Q 004202 477 -FGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 477 -lgip~iIVVvNKmDlv~ 493 (768)
.++| ++|++||.|+..
T Consensus 249 ~~~~p-iil~~NK~D~~~ 265 (342)
T smart00275 249 FANTS-IILFLNKIDLFE 265 (342)
T ss_pred ccCCc-EEEEEecHHhHH
Confidence 2456 899999999863
No 467
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.90 E-value=0.011 Score=54.08 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 004202 341 LNLAIVGHVDSGKSTLSGRLL 361 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll 361 (768)
.+|+++|..++|||+|+.++.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred CEEEEECCCChhHHHHHHHHh
Confidence 379999999999999999986
No 468
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.77 E-value=0.056 Score=48.73 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=26.7
Q ss_pred eEEEEEeCCCccchHHHHHHhcccCCEEEEEEecCCC
Q 004202 418 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 454 (768)
Q Consensus 418 ~~i~lIDTPGh~~f~~~~i~g~~~aD~aILVVDA~~g 454 (768)
+.++|+|+|+..... ....+..+|.+|++++++..
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 679999999965432 33566779999999998753
No 469
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.60 E-value=0.018 Score=64.19 Aligned_cols=28 Identities=43% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
....+|+++|++|+|||||...|++...
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l 98 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLL 98 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHh
Confidence 3567999999999999999999987643
No 470
>PRK13695 putative NTPase; Provisional
Probab=95.50 E-value=0.049 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
+|+++|.+|+|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 471
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.44 E-value=0.012 Score=64.97 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.2
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHh
Q 004202 337 RMTQLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 337 ~~~~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.+..+.|++||++|+|||+++|.|...
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhc
Confidence 467899999999999999999999854
No 472
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.43 E-value=0.028 Score=56.32 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=28.7
Q ss_pred CEEEEEEecCCCccccccccchhhhHHHHHH--HHHcCCCeEEEEEecccccc
Q 004202 443 DAAILVIDASVGSFEVGMNTAKGLTREHAQL--IRSFGVDQLIVAVNKMDAVQ 493 (768)
Q Consensus 443 D~aILVVDA~~g~~e~~~~~~~~qt~e~l~l--l~~lgip~iIVVvNKmDlv~ 493 (768)
|++++|+||..+. .....+.... +...+.| +|+|+||+|+++
T Consensus 1 DvVl~VvDar~p~--------~~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPL--------GCRCPQVEEAVLQAGGNKK-LVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCC--------CCCCHHHHHHHHhccCCCC-EEEEEehhhcCC
Confidence 7899999998763 1223333333 3334556 899999999985
No 473
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=95.26 E-value=0.077 Score=48.02 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=49.9
Q ss_pred eeEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec-ccccceeccCCceEEE
Q 004202 572 PICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVS 634 (768)
Q Consensus 572 ~I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~ 634 (768)
.|.+....+ .|.+ ++..|..|+|++||.+..+. ...+||+|... ..++++|.||+.|.|.
T Consensus 4 ~VlE~~~~~g~G~v-atviV~~GtL~~Gd~iv~G~--~~gkVr~l~d~~g~~v~~a~Ps~~V~I~ 65 (95)
T cd03702 4 VVIESKLDKGRGPV-ATVLVQNGTLKVGDVLVAGT--TYGKVRAMFDENGKRVKEAGPSTPVEIL 65 (95)
T ss_pred EEEEEEecCCCCcc-EEEEEEcCeEeCCCEEEEcc--cccEEEEEECCCCCCCCEECCCCcEEEc
Confidence 344555555 7888 89999999999999999984 46799999986 5899999999999874
No 474
>PRK01889 GTPase RsgA; Reviewed
Probab=95.25 E-value=0.018 Score=64.23 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
.+++++|.+|+|||||++.|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999964
No 475
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.11 E-value=0.12 Score=60.02 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=81.3
Q ss_pred cCCCCCceEEEEEeCCCCCHHHHHHHHHHhhCccchhhhhHHHHHHhhhCCCccchhhccccchhhhccCeEEEEEEEEE
Q 004202 334 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 413 (768)
Q Consensus 334 ~~~~~~~l~VaIvG~vdaGKSTLi~~Ll~~~~~i~~~~~~~~e~~a~~~gk~s~~~a~~~d~~~~Ere~GiTid~~~~~~ 413 (768)
+...+.....-++|.-++|||.|++.+++.. +. +..........+++.....
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~--~~-------------------------~~~~~~~~~~~avn~v~~~- 470 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRS--MS-------------------------DNNTGTTKPRYAVNSVEVK- 470 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccc--cc-------------------------cccccCCCCceeeeeeeec-
Confidence 3344567788999999999999999999521 10 1011111122333333222
Q ss_pred eeCCeEEEEEeCCCc-cchHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHH-cCCCeEEEEEecccc
Q 004202 414 DSKNYHVVVLDSPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDA 491 (768)
Q Consensus 414 ~~~~~~i~lIDTPGh-~~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~-lgip~iIVVvNKmDl 491 (768)
...+.++|-|.+-. .+++.+ .-..+|++++|.|.+.+. +| +...+...+-.. ..+| ++.|.+|+|+
T Consensus 471 -g~~k~LiL~ei~~~~~~~l~~---ke~~cDv~~~~YDsS~p~---sf----~~~a~v~~~~~~~~~~P-c~~va~K~dl 538 (625)
T KOG1707|consen 471 -GQQKYLILREIGEDDQDFLTS---KEAACDVACLVYDSSNPR---SF----EYLAEVYNKYFDLYKIP-CLMVATKADL 538 (625)
T ss_pred -cccceEEEeecCccccccccC---ccceeeeEEEecccCCch---HH----HHHHHHHHHhhhccCCc-eEEEeecccc
Confidence 23344556665542 112211 116799999999998642 22 223333333333 3566 8999999998
Q ss_pred cccchhhHHHHHHHHhHHHhhcCCCCCCCcEEEeeccc
Q 004202 492 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 529 (768)
Q Consensus 492 v~~s~e~~~~i~~el~~~lk~~g~~~~~i~~IpVSA~t 529 (768)
-...+ +..-+..++..+.++.. -+++|..+
T Consensus 539 De~~Q----~~~iqpde~~~~~~i~~----P~~~S~~~ 568 (625)
T KOG1707|consen 539 DEVPQ----RYSIQPDEFCRQLGLPP----PIHISSKT 568 (625)
T ss_pred chhhh----ccCCChHHHHHhcCCCC----CeeeccCC
Confidence 64321 12222355666667652 25666664
No 476
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=95.02 E-value=0.061 Score=63.89 Aligned_cols=75 Identities=21% Similarity=0.412 Sum_probs=61.2
Q ss_pred eEEeeCCCcEEEEEEEecCcccCCCEEEEccCC-eeeEEEeeeecccccceeccCCceEEEeccccc-ccccCCccccc
Q 004202 575 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSG-EVGTVHSIERDSQSCSVARAGDNIAVSLQGIDV-SRVMSGGVLCH 651 (768)
Q Consensus 575 dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~-~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~-~~i~rG~VL~~ 651 (768)
.+|+.+.+.+ +..+|..|.|+.|..|. .+.+ ...+|.||+++.+++++|.+|+-|+|.|.+... .+++.||+|-.
T Consensus 473 ~vf~~~~~~i-~G~~V~~G~i~~~~~v~-r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSKPAI-VGVEVLTGVIRQGYPLM-KDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCCCeE-EEEEEecCEEecCCeEE-ecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 6777766666 67799999999999874 3433 468899999999999999999999999988532 57889999864
No 477
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.97 E-value=0.073 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
..+.|+|+|..|+|||||+.+|+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 345799999999999999999984
No 478
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.82 E-value=0.09 Score=55.85 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
-.+||..||.+|-|||||+..|.+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFN 64 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFN 64 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhc
Confidence 468999999999999999999984
No 479
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=94.45 E-value=0.021 Score=56.37 Aligned_cols=29 Identities=28% Similarity=0.793 Sum_probs=26.2
Q ss_pred CCCceeecccccCCCCCcccccccCCCCC
Q 004202 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (768)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (768)
..|.|-|+.|||-|+.....|-||++...
T Consensus 21 Deg~WdCsvCTFrNsAeAfkC~vCdvRKG 49 (228)
T KOG4477|consen 21 DEGKWDCSVCTFRNSAEAFKCFVCDVRKG 49 (228)
T ss_pred ccCceeeeeeeecchhhhhheeeeccccc
Confidence 55779999999999999999999999763
No 480
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=94.29 E-value=0.2 Score=45.31 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=48.6
Q ss_pred eEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCeeeEEEeeeec-ccccceeccCCceEEE
Q 004202 573 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGEVGTVHSIERD-SQSCSVARAGDNIAVS 634 (768)
Q Consensus 573 I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aGd~V~l~ 634 (768)
|.+.-..+ .|.+ ++..|.+|+|++||.+..+ ....+|+.+... .+.+..|.|++.|.+.
T Consensus 5 ViE~~~~~g~G~v-atviV~~GtL~~Gd~iv~G--~~~GkVr~~~d~~g~~v~~a~Ps~~v~i~ 65 (95)
T cd03701 5 VIESKLDKGRGPV-ATVIVQNGTLKKGDVIVAG--GTYGKIRTMVDENGKALLEAGPSTPVEIL 65 (95)
T ss_pred EEEEEecCCCCee-EEEEEEcCeEecCCEEEEC--CccceEEEEECCCCCCccccCCCCCEEEe
Confidence 44555555 7988 8999999999999999987 457899999975 6789999999988554
No 481
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.27 E-value=0.15 Score=56.73 Aligned_cols=79 Identities=24% Similarity=0.309 Sum_probs=51.3
Q ss_pred EeCCCcc-chHHHHHHhcccCCEEEEEEecCCCccccccccchhhhHHHHHHHHHcCCCeEEEEEecccccccchhhHHH
Q 004202 423 LDSPGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 501 (768)
Q Consensus 423 IDTPGh~-~f~~~~i~g~~~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~lgip~iIVVvNKmDlv~~s~e~~~~ 501 (768)
.|-+++. .|.++...-+..+|++|-|+||.++.-. -..+..+. ++.+-|-+++|+|+||+|++. .+
T Consensus 127 ~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgt-----R~~~vE~~--V~~~~gnKkLILVLNK~DLVP--rE---- 193 (435)
T KOG2484|consen 127 LDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGT-----RCPEVEEA--VLQAHGNKKLILVLNKIDLVP--RE---- 193 (435)
T ss_pred ccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCC-----CChhHHHH--HHhccCCceEEEEeehhccCC--HH----
Confidence 3444433 4788888888899999999999997411 11233332 223445467999999999996 33
Q ss_pred HHHHHhHHHhhcC
Q 004202 502 IKVQLGTFLRSCG 514 (768)
Q Consensus 502 i~~el~~~lk~~g 514 (768)
..++...+|+.-+
T Consensus 194 v~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 194 VVEKWLVYLRREG 206 (435)
T ss_pred HHHHHHHHHHhhC
Confidence 3455555665543
No 482
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.25 E-value=0.047 Score=50.39 Aligned_cols=24 Identities=46% Similarity=0.487 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhC
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
+|+|.|.++|||||+.+.|....+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 589999999999999999996544
No 483
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.08 E-value=0.18 Score=41.25 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=26.8
Q ss_pred HHHhcc-cCCEEEEEEecCCCccccccccchhhhHHHHHHHHHc-CCCeEEEEEeccc
Q 004202 435 MISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMD 490 (768)
Q Consensus 435 ~i~g~~-~aD~aILVVDA~~g~~e~~~~~~~~qt~e~l~ll~~l-gip~iIVVvNKmD 490 (768)
.+.+++ .++++++++|.+.. .|+. +..|..-.-.+-..+ +.| +++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~---CGys-ie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQ---CGYS-IEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-T---TSS--HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCC---CCCC-HHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 344444 48999999999864 3442 233443333333445 566 999999998
No 484
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=0.1 Score=65.73 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.5
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 004202 342 NLAIVGHVDSGKSTLSGRL 360 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~L 360 (768)
=-+|||++|+||||++...
T Consensus 127 Wy~viG~pgsGKTtal~~s 145 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNS 145 (1188)
T ss_pred ceEEecCCCCCcchHHhcc
Confidence 3578999999999997543
No 485
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=93.24 E-value=0.54 Score=43.69 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=54.6
Q ss_pred eEeEEeeC-CCcEEEEEEEecCcccCCCEEEEccCCe--eeEEEeeeeccc-----------ccceeccCCceEEEeccc
Q 004202 573 ICDVLKSQ-HGQVSACGKLEAGALRSGLKVLVLPSGE--VGTVHSIERDSQ-----------SCSVARAGDNIAVSLQGI 638 (768)
Q Consensus 573 I~dv~~~~-~G~V~v~G~V~sG~L~~Gd~v~i~P~~~--~~~VksI~~~~~-----------~v~~A~aGd~V~l~L~gi 638 (768)
|-++-..+ .|.+ +.-.|..|+|++||.|.++...- ..+||+|...+- ++++|.|..-+-|...|+
T Consensus 5 VlEvk~~~G~G~t-~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~gL 83 (110)
T cd03703 5 VLEVKEEEGLGTT-IDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPDL 83 (110)
T ss_pred EEEEEEcCCCceE-EEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCCC
Confidence 44555556 8988 89999999999999999986542 469999987643 788888777777765555
Q ss_pred ccccccCCccc
Q 004202 639 DVSRVMSGGVL 649 (768)
Q Consensus 639 ~~~~i~rG~VL 649 (768)
+ ++..|+-|
T Consensus 84 ~--~v~aG~~~ 92 (110)
T cd03703 84 E--KAIAGSPL 92 (110)
T ss_pred c--cccCCCEE
Confidence 3 23556544
No 486
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.15 E-value=0.49 Score=46.91 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCHHHHHHHHHH
Q 004202 339 TQLNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 339 ~~l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
..++|+|-|+||+|||||+..|..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 458999999999999999999984
No 487
>PRK04004 translation initiation factor IF-2; Validated
Probab=93.11 E-value=0.22 Score=59.37 Aligned_cols=74 Identities=23% Similarity=0.489 Sum_probs=59.0
Q ss_pred eEEeeCCCcEEEEEEEecCcccCCCEEEEccCCe-eeEEEeeeecccccceeccCCceEEEeccccc-ccccCCcccc
Q 004202 575 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSGE-VGTVHSIERDSQSCSVARAGDNIAVSLQGIDV-SRVMSGGVLC 650 (768)
Q Consensus 575 dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~~-~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~~-~~i~rG~VL~ 650 (768)
.+|+.+.+.+ +..+|..|.|+.|..|. .+.+. ..+|.||+++.++|++|.+|+-|+|.|.+... .+++.||+|-
T Consensus 475 ~vf~~~~~~I-aGc~V~~G~i~~~~~v~-r~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~ 550 (586)
T PRK04004 475 YVFRQSDPAI-VGVEVLGGTIKPGVPLI-KEDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILY 550 (586)
T ss_pred eeEecCCCeE-EEEEEEeCEEecCCEEE-EECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEE
Confidence 6787766655 67799999999999854 33443 57899999999999999999999999987522 4678888874
No 488
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.94 E-value=0.1 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
+.|+|+|+.|+|||||+..|+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999994
No 489
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.79 E-value=0.11 Score=43.38 Aligned_cols=22 Identities=36% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
...|.|+.++|||||+.++...
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999853
No 490
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.76 E-value=0.099 Score=52.71 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCc
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
+|+|+|++||||||+...|....+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7999999999999999999976443
No 491
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.71 E-value=0.11 Score=49.34 Aligned_cols=23 Identities=48% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHhhC
Q 004202 343 LAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 343 VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
|.++|.+|+|||||+..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999996544
No 492
>PRK14845 translation initiation factor IF-2; Provisional
Probab=92.67 E-value=0.23 Score=62.43 Aligned_cols=75 Identities=25% Similarity=0.429 Sum_probs=60.6
Q ss_pred eEEeeCCCcEEEEEEEecCcccCCCEEEEccCC-eeeEEEeeeecccccceeccCCceEEEecccc-cccccCCccccc
Q 004202 575 DVLKSQHGQVSACGKLEAGALRSGLKVLVLPSG-EVGTVHSIERDSQSCSVARAGDNIAVSLQGID-VSRVMSGGVLCH 651 (768)
Q Consensus 575 dv~~~~~G~V~v~G~V~sG~L~~Gd~v~i~P~~-~~~~VksI~~~~~~v~~A~aGd~V~l~L~gi~-~~~i~rG~VL~~ 651 (768)
.+|+.+.+.+ +..+|..|+|+.|..|.- +.+ ...+|.||+++++++++|.+|+-|+|.+.+.. ..++..||+|-.
T Consensus 931 ~vF~~~~~~I-aG~~V~~G~i~~~~~l~r-~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~ 1007 (1049)
T PRK14845 931 CIFRRSNPAI-VGVEVLEGTLRVGVTLIK-EDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYV 1007 (1049)
T ss_pred eEEeCCCCeE-EEEEEeeCEEecCcEEEe-cCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 6787776666 777999999999987743 333 35789999999999999999999999998743 246888888854
No 493
>PRK08233 hypothetical protein; Provisional
Probab=92.62 E-value=0.12 Score=51.20 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
...|+|.|.+|||||||..+|....+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47799999999999999999997653
No 494
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.57 E-value=0.2 Score=53.31 Aligned_cols=23 Identities=43% Similarity=0.478 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLF 362 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~ 362 (768)
..+|+|+|.+|+||||++++|+.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCccccchHHHHHhh
Confidence 57899999999999999999984
No 495
>PHA00729 NTP-binding motif containing protein
Probab=92.50 E-value=0.15 Score=53.41 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
..+|+|.|.+|+|||||..+|...
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 496
>PRK08118 topology modulation protein; Reviewed
Probab=92.50 E-value=0.11 Score=51.65 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhC
Q 004202 341 LNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 341 l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
.+|.|+|.+|||||||...|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999986543
No 497
>PRK07261 topology modulation protein; Provisional
Probab=92.50 E-value=0.11 Score=51.78 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 004202 342 NLAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 342 ~VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999743
No 498
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.49 E-value=0.49 Score=45.02 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHh
Q 004202 343 LAIVGHVDSGKSTLSGRLLFL 363 (768)
Q Consensus 343 VaIvG~vdaGKSTLi~~Ll~~ 363 (768)
++|.|.+|+|||||+..|+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999999854
No 499
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.46 E-value=0.13 Score=52.72 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=23.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHhhC
Q 004202 338 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 365 (768)
Q Consensus 338 ~~~l~VaIvG~vdaGKSTLi~~Ll~~~~ 365 (768)
++...|+|+|.+|+|||||+++|.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999987543
No 500
>PRK14530 adenylate kinase; Provisional
Probab=92.16 E-value=0.14 Score=52.82 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHhhCc
Q 004202 340 QLNLAIVGHVDSGKSTLSGRLLFLLGR 366 (768)
Q Consensus 340 ~l~VaIvG~vdaGKSTLi~~Ll~~~~~ 366 (768)
.++|+|+|.+||||||+...|....+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 458999999999999999999876553
Done!