Query 004203
Match_columns 768
No_of_seqs 517 out of 3524
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 19:19:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 99.9 3.7E-25 8E-30 237.6 17.8 205 47-255 183-407 (459)
2 KOG0272 U4/U6 small nuclear ri 99.9 1.2E-24 2.6E-29 233.7 17.7 238 74-321 180-448 (459)
3 PTZ00421 coronin; Provisional 99.9 2.3E-22 4.9E-27 230.3 35.6 264 32-322 3-278 (493)
4 KOG0303 Actin-binding protein 99.9 3.8E-24 8.2E-29 228.2 18.5 219 29-253 5-233 (472)
5 KOG0279 G protein beta subunit 99.9 5.8E-23 1.3E-27 211.7 25.4 243 79-325 26-305 (315)
6 KOG0271 Notchless-like WD40 re 99.9 3.3E-23 7.2E-28 220.2 22.1 243 72-321 160-469 (480)
7 KOG0263 Transcription initiati 99.9 2.6E-23 5.6E-28 237.1 20.6 180 77-260 459-649 (707)
8 KOG0263 Transcription initiati 99.9 7.3E-23 1.6E-27 233.5 19.3 218 72-324 381-640 (707)
9 PTZ00420 coronin; Provisional 99.9 1.1E-20 2.3E-25 218.5 34.1 212 32-255 4-234 (568)
10 KOG0279 G protein beta subunit 99.9 6.5E-22 1.4E-26 204.0 21.3 217 77-298 71-301 (315)
11 KOG0271 Notchless-like WD40 re 99.9 4.4E-22 9.6E-27 211.7 20.6 244 73-323 119-429 (480)
12 KOG0266 WD40 repeat-containing 99.9 4.5E-21 9.7E-26 218.1 28.4 188 75-264 165-368 (456)
13 KOG0286 G-protein beta subunit 99.9 1.7E-20 3.6E-25 194.6 24.8 217 46-264 62-307 (343)
14 KOG0315 G-protein beta subunit 99.9 2.5E-20 5.4E-25 189.8 22.1 238 80-323 9-278 (311)
15 KOG0265 U5 snRNP-specific prot 99.9 3.8E-20 8.2E-25 192.5 22.7 196 77-275 55-262 (338)
16 KOG0284 Polyadenylation factor 99.9 1.7E-20 3.7E-25 201.2 19.0 219 77-323 146-370 (464)
17 KOG0286 G-protein beta subunit 99.9 2.6E-20 5.6E-25 193.2 19.5 171 80-254 155-334 (343)
18 KOG0291 WD40-repeat-containing 99.9 1.1E-19 2.3E-24 206.2 26.0 213 79-321 317-538 (893)
19 KOG0292 Vesicle coat complex C 99.9 8.2E-20 1.8E-24 209.3 25.3 312 79-398 19-436 (1202)
20 KOG0285 Pleiotropic regulator 99.9 4E-20 8.7E-25 195.6 21.2 247 73-323 155-429 (460)
21 KOG0310 Conserved WD40 repeat- 99.8 1E-19 2.2E-24 198.9 23.3 218 77-323 76-299 (487)
22 cd00200 WD40 WD40 domain, foun 99.8 1.6E-18 3.5E-23 174.1 29.4 182 77-262 17-209 (289)
23 KOG0273 Beta-transducin family 99.8 2.2E-19 4.7E-24 195.5 24.2 175 77-255 243-472 (524)
24 KOG0266 WD40 repeat-containing 99.8 2.9E-19 6.3E-24 203.3 26.2 175 77-255 211-399 (456)
25 KOG0315 G-protein beta subunit 99.8 1.2E-19 2.5E-24 184.9 19.7 183 77-264 48-292 (311)
26 KOG0291 WD40-repeat-containing 99.8 4.1E-19 8.9E-24 201.4 25.5 233 75-322 356-601 (893)
27 KOG0295 WD40 repeat-containing 99.8 8.5E-20 1.9E-24 193.7 16.3 188 78-269 159-373 (406)
28 KOG0277 Peroxisomal targeting 99.8 1.9E-19 4.1E-24 183.9 16.5 187 75-263 67-268 (311)
29 PTZ00421 coronin; Provisional 99.8 1.4E-17 3E-22 190.9 32.0 173 80-255 87-279 (493)
30 KOG0283 WD40 repeat-containing 99.8 1.9E-18 4.1E-23 198.9 23.8 231 77-340 275-579 (712)
31 KOG0295 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 184.1 19.4 175 77-254 201-395 (406)
32 PLN00181 protein SPA1-RELATED; 99.8 3.5E-17 7.5E-22 198.0 33.5 178 75-255 489-680 (793)
33 KOG0284 Polyadenylation factor 99.8 3.2E-19 7E-24 191.4 11.7 190 79-276 106-307 (464)
34 KOG0282 mRNA splicing factor [ 99.8 6.7E-19 1.4E-23 192.3 13.7 217 102-322 209-451 (503)
35 KOG0645 WD40 repeat protein [G 99.8 1.4E-17 2.9E-22 171.7 22.5 174 81-255 27-215 (312)
36 KOG0276 Vesicle coat complex C 99.8 6.7E-18 1.5E-22 188.4 21.5 176 80-258 66-250 (794)
37 PLN00181 protein SPA1-RELATED; 99.8 6.7E-17 1.5E-21 195.6 31.9 174 80-255 544-728 (793)
38 cd00200 WD40 WD40 domain, foun 99.8 2.9E-17 6.3E-22 165.0 23.6 172 80-255 104-281 (289)
39 KOG0285 Pleiotropic regulator 99.8 1.2E-17 2.6E-22 177.0 21.0 187 77-268 201-397 (460)
40 KOG0772 Uncharacterized conser 99.8 5.9E-18 1.3E-22 185.7 19.2 218 76-321 174-427 (641)
41 KOG0319 WD40-repeat-containing 99.8 6E-18 1.3E-22 192.0 19.1 173 79-255 422-609 (775)
42 KOG0273 Beta-transducin family 99.8 8.8E-18 1.9E-22 183.1 19.4 172 80-255 328-513 (524)
43 KOG0282 mRNA splicing factor [ 99.8 2.8E-18 6E-23 187.5 14.7 144 80-224 226-376 (503)
44 KOG1446 Histone H3 (Lys4) meth 99.8 1.4E-16 3.1E-21 167.2 26.9 177 75-255 20-207 (311)
45 KOG0645 WD40 repeat protein [G 99.8 6.9E-17 1.5E-21 166.5 23.0 153 101-255 8-169 (312)
46 KOG0316 Conserved WD40 repeat- 99.8 1.9E-17 4E-22 167.9 18.1 191 77-275 25-225 (307)
47 KOG0318 WD40 repeat stress pro 99.8 1.3E-15 2.9E-20 167.9 33.9 192 73-264 63-269 (603)
48 KOG0313 Microtubule binding pr 99.8 4.6E-17 9.9E-22 173.9 20.4 181 81-263 159-379 (423)
49 KOG0973 Histone transcription 99.8 3.8E-17 8.3E-22 192.2 21.7 179 76-255 20-239 (942)
50 KOG0292 Vesicle coat complex C 99.7 7.3E-17 1.6E-21 185.4 22.3 192 75-268 57-288 (1202)
51 KOG0283 WD40 repeat-containing 99.7 6.2E-18 1.3E-22 194.8 13.5 148 102-255 261-471 (712)
52 KOG0281 Beta-TrCP (transducin 99.7 3.2E-18 6.9E-23 180.6 9.7 204 78-293 204-433 (499)
53 KOG0305 Anaphase promoting com 99.7 2.1E-16 4.5E-21 177.9 22.1 219 78-327 226-455 (484)
54 KOG1407 WD40 repeat protein [F 99.7 3.9E-16 8.4E-21 160.4 22.0 212 77-324 28-252 (313)
55 KOG0319 WD40-repeat-containing 99.7 1.1E-16 2.4E-21 181.9 19.6 186 79-268 375-585 (775)
56 KOG0275 Conserved WD40 repeat- 99.7 5.7E-17 1.2E-21 169.8 15.7 176 77-254 221-411 (508)
57 PTZ00420 coronin; Provisional 99.7 5.8E-16 1.3E-20 179.5 25.5 174 80-255 86-283 (568)
58 KOG0281 Beta-TrCP (transducin 99.7 2E-17 4.3E-22 174.6 11.7 219 31-262 193-430 (499)
59 KOG0269 WD40 repeat-containing 99.7 3E-17 6.4E-22 187.1 13.8 181 80-262 99-298 (839)
60 KOG0264 Nucleosome remodeling 99.7 8.4E-17 1.8E-21 175.1 16.3 181 75-255 184-393 (422)
61 KOG0640 mRNA cleavage stimulat 99.7 3.2E-16 7E-21 163.7 19.0 241 71-317 114-410 (430)
62 KOG0296 Angio-associated migra 99.7 2.1E-15 4.6E-20 160.6 25.5 243 79-325 74-390 (399)
63 KOG0274 Cdc4 and related F-box 99.7 1.2E-15 2.7E-20 176.0 25.0 210 81-299 218-452 (537)
64 KOG0305 Anaphase promoting com 99.7 4.6E-16 1E-20 175.2 19.9 176 81-259 270-455 (484)
65 KOG0302 Ribosome Assembly prot 99.7 4E-16 8.6E-21 166.6 17.4 177 80-258 223-431 (440)
66 KOG0289 mRNA splicing factor [ 99.7 1.5E-15 3.3E-20 164.4 21.9 179 80-262 230-421 (506)
67 KOG0276 Vesicle coat complex C 99.7 3.3E-16 7.1E-21 175.1 17.0 175 77-255 105-289 (794)
68 KOG0318 WD40 repeat stress pro 99.7 1.1E-14 2.4E-19 160.7 28.3 169 81-255 160-340 (603)
69 KOG0647 mRNA export protein (c 99.7 5.1E-15 1.1E-19 154.7 23.9 213 80-321 39-311 (347)
70 KOG0302 Ribosome Assembly prot 99.7 1.5E-15 3.2E-20 162.3 20.1 189 72-260 156-378 (440)
71 KOG0265 U5 snRNP-specific prot 99.7 1.8E-15 4E-20 157.9 20.3 163 102-269 42-213 (338)
72 KOG0639 Transducin-like enhanc 99.7 4.2E-16 9.2E-21 170.6 16.0 215 77-323 473-694 (705)
73 KOG0264 Nucleosome remodeling 99.7 1.9E-15 4.1E-20 164.7 20.7 181 80-262 136-349 (422)
74 KOG0640 mRNA cleavage stimulat 99.7 7.1E-16 1.5E-20 161.2 16.5 158 101-259 106-285 (430)
75 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 3.3E-14 7.2E-19 148.2 29.3 176 82-264 2-191 (300)
76 KOG0306 WD40-repeat-containing 99.7 1E-15 2.3E-20 174.0 17.5 180 79-262 464-661 (888)
77 KOG0289 mRNA splicing factor [ 99.7 4.1E-15 8.9E-20 161.1 20.6 174 79-255 271-452 (506)
78 KOG0643 Translation initiation 99.7 4.9E-15 1.1E-19 152.7 20.1 153 102-255 5-167 (327)
79 KOG0293 WD40 repeat-containing 99.7 2.1E-15 4.6E-20 162.4 17.8 238 75-321 230-500 (519)
80 KOG0313 Microtubule binding pr 99.7 2.5E-15 5.3E-20 160.8 17.8 180 75-260 199-413 (423)
81 KOG0278 Serine/threonine kinas 99.7 4.2E-16 9.1E-21 159.2 11.4 213 81-323 71-287 (334)
82 KOG0275 Conserved WD40 repeat- 99.6 1.9E-16 4E-21 166.0 8.0 161 105-269 211-387 (508)
83 KOG0643 Translation initiation 99.6 9E-15 1.9E-19 150.8 19.6 180 78-261 19-221 (327)
84 KOG0267 Microtubule severing p 99.6 3E-16 6.5E-21 177.9 9.5 172 78-253 37-214 (825)
85 KOG0308 Conserved WD40 repeat- 99.6 9.1E-16 2E-20 172.5 13.0 187 79-269 35-252 (735)
86 KOG0294 WD40 repeat-containing 99.6 1.1E-14 2.3E-19 153.0 19.9 171 79-255 51-227 (362)
87 KOG0267 Microtubule severing p 99.6 2.5E-16 5.4E-21 178.5 8.0 171 80-254 81-257 (825)
88 KOG0310 Conserved WD40 repeat- 99.6 6.4E-15 1.4E-19 161.7 18.5 170 79-255 121-299 (487)
89 KOG0277 Peroxisomal targeting 99.6 1.8E-15 3.8E-20 155.0 13.2 174 80-255 116-298 (311)
90 KOG0269 WD40 repeat-containing 99.6 1.8E-15 3.9E-20 172.7 14.6 173 80-255 145-329 (839)
91 KOG0316 Conserved WD40 repeat- 99.6 9E-15 2E-19 148.5 17.3 149 102-254 12-162 (307)
92 KOG0306 WD40-repeat-containing 99.6 3.6E-14 7.7E-19 161.7 23.3 197 74-274 417-633 (888)
93 KOG0278 Serine/threonine kinas 99.6 4.1E-15 8.8E-20 152.0 14.0 177 74-255 105-287 (334)
94 KOG1407 WD40 repeat protein [F 99.6 1.1E-14 2.5E-19 149.6 16.6 213 101-362 14-231 (313)
95 KOG1332 Vesicle coat complex C 99.6 1.8E-14 4E-19 147.0 17.7 167 80-247 22-219 (299)
96 KOG0288 WD40 repeat protein Ti 99.6 2.5E-15 5.4E-20 162.0 11.6 175 79-260 185-366 (459)
97 KOG0293 WD40 repeat-containing 99.6 1.6E-14 3.6E-19 155.6 17.3 149 102-255 219-374 (519)
98 KOG1445 Tumor-specific antigen 99.6 1.5E-14 3.2E-19 161.7 17.2 257 32-321 553-831 (1012)
99 KOG0288 WD40 repeat protein Ti 99.6 1.1E-14 2.3E-19 157.2 15.3 180 78-262 228-419 (459)
100 KOG0274 Cdc4 and related F-box 99.6 4E-14 8.7E-19 163.6 20.3 181 79-270 259-451 (537)
101 KOG0296 Angio-associated migra 99.6 5.6E-14 1.2E-18 149.9 18.8 159 100-262 57-222 (399)
102 KOG4283 Transcription-coupled 99.6 9.6E-14 2.1E-18 144.7 20.0 176 79-255 54-266 (397)
103 KOG0308 Conserved WD40 repeat- 99.6 5.3E-14 1.1E-18 158.5 18.8 172 80-255 84-275 (735)
104 KOG0646 WD40 repeat protein [G 99.6 5.4E-14 1.2E-18 153.8 18.3 200 73-273 85-320 (476)
105 KOG2096 WD40 repeat protein [G 99.6 6.8E-14 1.5E-18 147.1 17.9 179 73-255 191-393 (420)
106 KOG0270 WD40 repeat-containing 99.6 3.6E-14 7.8E-19 154.4 16.1 174 80-255 191-393 (463)
107 KOG0300 WD40 repeat-containing 99.6 5.6E-14 1.2E-18 147.4 16.5 183 79-265 158-391 (481)
108 KOG1274 WD40 repeat protein [G 99.6 8.8E-14 1.9E-18 161.6 19.7 189 71-261 56-263 (933)
109 KOG0973 Histone transcription 99.6 6.7E-14 1.5E-18 165.2 17.4 238 74-325 74-347 (942)
110 KOG0299 U3 snoRNP-associated p 99.6 2.8E-13 6E-18 148.1 20.9 180 71-254 204-399 (479)
111 PRK05137 tolB translocation pr 99.5 1.5E-12 3.2E-17 147.4 27.8 224 91-345 182-420 (435)
112 KOG1034 Transcriptional repres 99.5 2.8E-13 6.1E-18 143.1 19.8 142 79-222 63-213 (385)
113 KOG1036 Mitotic spindle checkp 99.5 1.6E-12 3.4E-17 136.6 24.9 170 79-254 23-196 (323)
114 KOG0641 WD40 repeat protein [G 99.5 5E-13 1.1E-17 135.1 19.9 178 73-255 93-293 (350)
115 KOG1446 Histone H3 (Lys4) meth 99.5 1.1E-12 2.3E-17 138.3 23.2 175 89-269 78-271 (311)
116 KOG0772 Uncharacterized conser 99.5 1.3E-13 2.9E-18 151.9 17.2 175 80-255 225-429 (641)
117 KOG0268 Sof1-like rRNA process 99.5 5.4E-14 1.2E-18 149.9 13.0 213 82-323 80-335 (433)
118 PRK01742 tolB translocation pr 99.5 1.4E-12 3E-17 147.5 24.1 217 90-345 183-412 (429)
119 KOG4283 Transcription-coupled 99.5 2.4E-13 5.2E-18 141.7 16.2 202 104-325 40-268 (397)
120 PRK03629 tolB translocation pr 99.5 4.2E-12 9.1E-17 143.8 26.9 223 92-346 180-415 (429)
121 KOG0294 WD40 repeat-containing 99.5 7.2E-13 1.6E-17 139.4 18.3 146 103-255 39-188 (362)
122 KOG0301 Phospholipase A2-activ 99.5 4.1E-13 9E-18 152.3 17.3 163 80-255 111-278 (745)
123 KOG0307 Vesicle coat complex C 99.5 1E-13 2.3E-18 164.3 12.5 182 82-265 81-289 (1049)
124 PRK04922 tolB translocation pr 99.5 6.5E-12 1.4E-16 142.2 26.0 222 92-345 185-419 (433)
125 KOG0301 Phospholipase A2-activ 99.5 3.3E-13 7.1E-18 153.1 14.9 171 79-260 69-244 (745)
126 KOG0639 Transducin-like enhanc 99.5 6.6E-13 1.4E-17 145.9 16.5 173 77-255 427-612 (705)
127 KOG1274 WD40 repeat protein [G 99.5 1.7E-12 3.6E-17 151.2 20.4 171 75-253 102-288 (933)
128 KOG1332 Vesicle coat complex C 99.5 6E-13 1.3E-17 136.1 14.4 182 79-260 68-281 (299)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 8.8E-12 1.9E-16 130.0 23.7 186 77-268 80-287 (300)
130 KOG0299 U3 snoRNP-associated p 99.5 1.2E-12 2.5E-17 143.3 17.0 178 72-255 145-346 (479)
131 KOG0300 WD40 repeat-containing 99.5 1.3E-12 2.9E-17 137.2 16.2 189 81-277 124-359 (481)
132 KOG0321 WD40 repeat-containing 99.5 2.1E-12 4.5E-17 145.6 18.6 189 68-256 51-292 (720)
133 KOG1273 WD40 repeat protein [G 99.5 3.7E-12 7.9E-17 134.1 19.2 247 78-346 32-289 (405)
134 KOG1036 Mitotic spindle checkp 99.5 3.8E-12 8.2E-17 133.8 19.2 194 55-255 29-294 (323)
135 KOG4378 Nuclear protein COP1 [ 99.4 1.5E-12 3.2E-17 143.1 16.0 179 80-262 90-282 (673)
136 KOG1009 Chromatin assembly com 99.4 2.2E-12 4.7E-17 139.4 16.6 173 83-256 28-251 (434)
137 KOG1539 WD repeat protein [Gen 99.4 7.3E-12 1.6E-16 144.6 21.6 207 83-325 414-639 (910)
138 KOG1009 Chromatin assembly com 99.4 1.4E-12 3.1E-17 140.8 14.4 145 107-255 13-185 (434)
139 PRK02889 tolB translocation pr 99.4 3.6E-11 7.8E-16 136.0 26.6 221 92-344 177-410 (427)
140 KOG2096 WD40 repeat protein [G 99.4 3.8E-12 8.3E-17 134.1 16.7 199 102-323 81-298 (420)
141 KOG1539 WD repeat protein [Gen 99.4 4.5E-12 9.8E-17 146.3 18.4 170 80-255 459-637 (910)
142 KOG1408 WD40 repeat protein [F 99.4 2.9E-12 6.3E-17 145.3 16.2 191 66-260 456-713 (1080)
143 KOG0270 WD40 repeat-containing 99.4 4.7E-12 1E-16 138.1 16.9 175 76-255 251-438 (463)
144 KOG1034 Transcriptional repres 99.4 3.3E-12 7.1E-17 135.1 15.1 175 80-255 104-373 (385)
145 KOG0303 Actin-binding protein 99.4 4.6E-12 1E-16 136.4 16.1 173 80-255 93-283 (472)
146 KOG4328 WD40 protein [Function 99.4 4.6E-12 1E-16 138.5 16.2 182 78-260 197-394 (498)
147 KOG0647 mRNA export protein (c 99.4 2.3E-11 5E-16 127.6 19.7 199 55-257 44-316 (347)
148 TIGR02800 propeller_TolB tol-p 99.4 2.1E-10 4.6E-15 127.9 27.9 219 92-342 171-402 (417)
149 KOG2055 WD40 repeat protein [G 99.4 1.7E-11 3.7E-16 134.3 18.2 174 80-255 268-455 (514)
150 KOG2048 WD40 repeat protein [G 99.4 1.5E-10 3.3E-15 131.6 25.9 187 73-262 29-235 (691)
151 KOG1445 Tumor-specific antigen 99.4 2.6E-12 5.5E-17 144.1 10.7 175 80-255 639-833 (1012)
152 PRK04792 tolB translocation pr 99.3 2.3E-10 5E-15 130.4 26.4 221 92-344 199-432 (448)
153 PRK00178 tolB translocation pr 99.3 2.6E-10 5.7E-15 128.6 26.7 222 92-345 180-414 (430)
154 KOG2106 Uncharacterized conser 99.3 9.7E-11 2.1E-15 129.4 21.9 171 77-256 253-468 (626)
155 KOG2445 Nuclear pore complex c 99.3 1.2E-10 2.6E-15 122.6 21.1 168 79-246 23-234 (361)
156 KOG1408 WD40 repeat protein [F 99.3 6.1E-11 1.3E-15 134.8 19.4 242 80-324 391-704 (1080)
157 KOG0321 WD40 repeat-containing 99.3 2.3E-10 4.9E-15 129.4 21.6 229 30-261 61-348 (720)
158 KOG0771 Prolactin regulatory e 99.3 3.5E-11 7.5E-16 130.9 14.7 183 72-258 147-347 (398)
159 KOG1273 WD40 repeat protein [G 99.3 2.3E-11 5E-16 128.2 12.6 145 110-255 26-173 (405)
160 KOG2055 WD40 repeat protein [G 99.3 6.3E-11 1.4E-15 129.9 16.0 210 32-255 278-502 (514)
161 KOG0268 Sof1-like rRNA process 99.3 1.2E-11 2.6E-16 132.2 10.0 155 105-263 185-343 (433)
162 KOG0641 WD40 repeat protein [G 99.3 2.8E-10 6.1E-15 115.4 19.2 149 71-220 184-349 (350)
163 KOG4378 Nuclear protein COP1 [ 99.3 1.2E-10 2.5E-15 128.4 17.6 174 77-253 129-310 (673)
164 KOG0642 Cell-cycle nuclear pro 99.3 3.6E-11 7.7E-16 134.4 13.7 173 80-256 305-552 (577)
165 KOG0646 WD40 repeat protein [G 99.3 1.1E-10 2.5E-15 128.0 17.0 167 77-248 131-332 (476)
166 COG2319 FOG: WD40 repeat [Gene 99.3 5.3E-10 1.1E-14 116.9 21.1 167 83-253 125-302 (466)
167 KOG2394 WD40 protein DMR-N9 [G 99.2 9.3E-11 2E-15 130.4 15.5 171 79-257 183-392 (636)
168 PF08662 eIF2A: Eukaryotic tra 99.2 6.7E-10 1.4E-14 113.0 20.6 141 111-260 9-168 (194)
169 PF08662 eIF2A: Eukaryotic tra 99.2 7.5E-10 1.6E-14 112.6 20.9 112 106-222 58-181 (194)
170 KOG1523 Actin-related protein 99.2 4E-10 8.6E-15 119.3 19.1 221 77-323 18-269 (361)
171 KOG0290 Conserved WD40 repeat- 99.2 9.4E-11 2E-15 122.6 13.7 169 90-260 120-318 (364)
172 PRK11028 6-phosphogluconolacto 99.2 4.8E-09 1E-13 113.9 27.7 173 86-260 7-205 (330)
173 KOG2110 Uncharacterized conser 99.2 6.5E-10 1.4E-14 119.5 19.8 157 65-223 81-251 (391)
174 KOG1188 WD40 repeat protein [G 99.2 1.8E-10 3.9E-15 122.7 15.4 181 82-263 41-245 (376)
175 KOG2106 Uncharacterized conser 99.2 6.8E-10 1.5E-14 122.8 19.9 170 80-255 297-511 (626)
176 PRK03629 tolB translocation pr 99.2 2.5E-09 5.4E-14 121.3 25.3 170 79-255 208-393 (429)
177 KOG2048 WD40 repeat protein [G 99.2 9.6E-10 2.1E-14 125.2 21.5 172 80-255 79-265 (691)
178 KOG1310 WD40 repeat protein [G 99.2 4.1E-10 8.9E-15 125.4 17.8 155 101-255 44-220 (758)
179 KOG0290 Conserved WD40 repeat- 99.2 2.5E-10 5.3E-15 119.5 14.8 169 80-248 162-348 (364)
180 KOG0644 Uncharacterized conser 99.2 4.8E-11 1E-15 137.7 10.3 177 79-263 200-429 (1113)
181 KOG1524 WD40 repeat-containing 99.2 2.6E-10 5.6E-15 126.7 15.3 162 81-249 75-241 (737)
182 PRK01742 tolB translocation pr 99.2 8E-10 1.7E-14 125.2 19.6 169 78-255 212-391 (429)
183 PRK05137 tolB translocation pr 99.2 1.8E-09 3.8E-14 122.4 22.5 170 79-255 211-396 (435)
184 KOG4227 WD40 repeat protein [G 99.2 2.9E-10 6.4E-15 122.3 15.0 159 102-261 51-226 (609)
185 PRK01029 tolB translocation pr 99.2 6.4E-09 1.4E-13 118.0 26.9 226 92-346 166-412 (428)
186 KOG4328 WD40 protein [Function 99.2 2.2E-10 4.9E-15 125.5 14.1 157 103-261 182-354 (498)
187 KOG0649 WD40 repeat protein [G 99.2 7E-10 1.5E-14 113.8 16.5 165 81-255 72-264 (325)
188 KOG1007 WD repeat protein TSSC 99.2 5.7E-10 1.2E-14 116.7 16.1 147 105-255 121-278 (370)
189 PRK04922 tolB translocation pr 99.2 3.2E-09 6.9E-14 120.4 23.8 170 79-255 213-398 (433)
190 PRK04043 tolB translocation pr 99.2 1.5E-08 3.2E-13 114.9 28.8 211 108-346 188-409 (419)
191 KOG1063 RNA polymerase II elon 99.2 2.9E-10 6.3E-15 129.5 14.9 188 58-246 514-734 (764)
192 COG2319 FOG: WD40 repeat [Gene 99.2 8.7E-09 1.9E-13 107.7 24.3 175 76-253 162-346 (466)
193 KOG2919 Guanine nucleotide-bin 99.1 5.7E-10 1.2E-14 118.2 14.9 180 79-261 121-328 (406)
194 KOG1538 Uncharacterized conser 99.1 2.8E-10 6.1E-15 128.6 13.4 138 109-254 14-151 (1081)
195 KOG1063 RNA polymerase II elon 99.1 1.9E-10 4.2E-15 130.9 11.9 144 102-246 520-675 (764)
196 KOG1524 WD40 repeat-containing 99.1 7.1E-10 1.5E-14 123.3 15.9 160 79-255 114-276 (737)
197 KOG0307 Vesicle coat complex C 99.1 1.1E-10 2.4E-15 139.0 10.1 173 80-255 128-316 (1049)
198 KOG1523 Actin-related protein 99.1 1.8E-09 3.8E-14 114.5 17.4 148 106-254 9-165 (361)
199 PRK02889 tolB translocation pr 99.1 6.6E-09 1.4E-13 117.7 22.6 170 79-255 205-390 (427)
200 KOG1538 Uncharacterized conser 99.1 1.1E-08 2.4E-13 116.0 23.1 204 90-327 32-287 (1081)
201 PRK11028 6-phosphogluconolacto 99.1 2E-08 4.3E-13 109.1 24.5 181 74-255 84-293 (330)
202 KOG1188 WD40 repeat protein [G 99.1 1.7E-09 3.7E-14 115.3 14.8 153 72-224 75-246 (376)
203 KOG4227 WD40 repeat protein [G 99.1 4.5E-09 9.7E-14 113.3 17.5 176 77-253 64-262 (609)
204 KOG1007 WD repeat protein TSSC 99.1 3.9E-09 8.4E-14 110.6 16.5 164 88-255 37-234 (370)
205 KOG0650 WD40 repeat nucleolar 99.1 1.7E-09 3.7E-14 121.7 14.4 105 147-255 519-627 (733)
206 KOG0771 Prolactin regulatory e 99.1 1.4E-09 3E-14 118.6 13.2 147 111-259 148-305 (398)
207 KOG2919 Guanine nucleotide-bin 99.0 5.7E-09 1.2E-13 110.7 16.5 175 75-254 164-358 (406)
208 KOG2139 WD40 repeat protein [G 99.0 6.8E-09 1.5E-13 111.5 17.1 142 108-254 99-257 (445)
209 KOG2139 WD40 repeat protein [G 99.0 1.7E-08 3.7E-13 108.5 20.0 149 105-255 194-365 (445)
210 KOG2445 Nuclear pore complex c 99.0 1.9E-08 4E-13 106.4 19.8 196 104-317 10-237 (361)
211 PRK01029 tolB translocation pr 99.0 2.9E-08 6.4E-13 112.7 23.3 159 92-255 212-390 (428)
212 PRK00178 tolB translocation pr 99.0 5.7E-08 1.2E-12 109.7 25.2 170 79-255 208-393 (430)
213 KOG2110 Uncharacterized conser 99.0 2E-08 4.4E-13 108.2 20.0 158 91-255 68-238 (391)
214 TIGR02800 propeller_TolB tol-p 99.0 2.6E-08 5.6E-13 111.2 22.1 170 79-255 199-384 (417)
215 KOG0644 Uncharacterized conser 99.0 5.6E-10 1.2E-14 129.0 5.7 150 102-255 185-336 (1113)
216 KOG2394 WD40 protein DMR-N9 [G 98.9 2.1E-09 4.6E-14 119.8 9.0 94 107-201 290-384 (636)
217 PRK04792 tolB translocation pr 98.9 1.2E-07 2.7E-12 108.2 23.7 170 79-255 227-412 (448)
218 KOG0322 G-protein beta subunit 98.9 9.6E-09 2.1E-13 106.6 10.4 139 80-219 164-322 (323)
219 KOG1310 WD40 repeat protein [G 98.9 2.4E-08 5.2E-13 111.6 13.6 146 75-220 56-231 (758)
220 KOG0974 WD-repeat protein WDR6 98.8 2.7E-08 5.8E-13 118.1 13.2 141 80-223 144-291 (967)
221 KOG0649 WD40 repeat protein [G 98.8 1.7E-07 3.7E-12 96.6 16.7 179 79-263 20-238 (325)
222 PF02239 Cytochrom_D1: Cytochr 98.8 5.4E-07 1.2E-11 100.6 21.8 168 84-255 9-191 (369)
223 KOG1517 Guanine nucleotide bin 98.8 9.3E-08 2E-12 113.4 16.1 173 81-253 1177-1369(1387)
224 KOG0650 WD40 repeat nucleolar 98.8 1.9E-07 4.2E-12 105.5 16.8 144 106-253 520-668 (733)
225 KOG4547 WD40 repeat-containing 98.8 4.1E-07 8.9E-12 103.1 19.5 171 80-255 4-209 (541)
226 KOG1587 Cytoplasmic dynein int 98.7 8.9E-07 1.9E-11 102.9 22.4 176 78-255 252-461 (555)
227 KOG0642 Cell-cycle nuclear pro 98.7 1E-07 2.2E-12 107.3 13.9 156 70-226 345-567 (577)
228 KOG1240 Protein kinase contain 98.7 4.2E-07 9E-12 109.5 18.7 195 77-273 1057-1286(1431)
229 KOG2111 Uncharacterized conser 98.7 9.5E-07 2E-11 94.1 19.4 142 81-224 104-260 (346)
230 KOG1963 WD40 repeat protein [G 98.7 2.3E-06 5E-11 100.6 24.3 215 80-325 27-314 (792)
231 COG2706 3-carboxymuconate cycl 98.7 1.1E-05 2.3E-10 87.6 26.6 165 90-255 15-210 (346)
232 KOG1517 Guanine nucleotide bin 98.7 7E-07 1.5E-11 106.2 18.9 176 78-254 1120-1323(1387)
233 KOG1587 Cytoplasmic dynein int 98.6 8.5E-07 1.8E-11 103.1 18.3 171 82-254 306-505 (555)
234 PRK04043 tolB translocation pr 98.6 5.2E-06 1.1E-10 94.2 24.0 186 128-346 168-366 (419)
235 KOG2111 Uncharacterized conser 98.6 1.5E-06 3.2E-11 92.7 17.3 160 90-255 74-246 (346)
236 KOG4497 Uncharacterized conser 98.6 7.4E-07 1.6E-11 95.1 14.8 137 112-255 13-153 (447)
237 KOG1240 Protein kinase contain 98.6 2.5E-06 5.4E-11 103.1 20.9 164 96-261 1034-1226(1431)
238 KOG1272 WD40-repeat-containing 98.6 5.8E-08 1.3E-12 107.1 6.6 188 69-263 129-326 (545)
239 KOG2321 WD40 repeat protein [G 98.6 6.5E-07 1.4E-11 101.0 14.9 167 83-254 147-332 (703)
240 PF02239 Cytochrom_D1: Cytochr 98.6 5.3E-06 1.1E-10 92.7 21.9 131 120-254 6-146 (369)
241 KOG1272 WD40-repeat-containing 98.6 1.4E-07 3E-12 104.2 8.7 168 80-249 220-393 (545)
242 KOG3881 Uncharacterized conser 98.6 3E-06 6.4E-11 92.3 18.3 178 80-260 114-315 (412)
243 KOG0322 G-protein beta subunit 98.6 8.8E-08 1.9E-12 99.6 6.3 94 85-179 221-322 (323)
244 KOG2321 WD40 repeat protein [G 98.6 3.5E-06 7.5E-11 95.3 19.3 189 75-268 58-310 (703)
245 PF10282 Lactonase: Lactonase, 98.6 3.4E-05 7.5E-10 85.1 27.2 147 108-255 37-211 (345)
246 KOG0974 WD-repeat protein WDR6 98.5 1.6E-06 3.5E-11 103.4 16.8 175 79-260 97-283 (967)
247 KOG0280 Uncharacterized conser 98.5 2.2E-06 4.8E-11 90.5 13.7 148 77-224 129-288 (339)
248 KOG1963 WD40 repeat protein [G 98.4 3.7E-06 8.1E-11 98.9 16.5 180 72-253 208-416 (792)
249 KOG0280 Uncharacterized conser 98.4 6.8E-06 1.5E-10 86.9 16.6 163 83-248 87-266 (339)
250 KOG3881 Uncharacterized conser 98.4 2.2E-06 4.7E-11 93.4 12.6 123 80-203 215-343 (412)
251 PF10282 Lactonase: Lactonase, 98.4 0.00011 2.3E-09 81.2 26.3 180 75-255 92-311 (345)
252 KOG4547 WD40 repeat-containing 98.4 6.6E-06 1.4E-10 93.5 15.9 141 79-222 68-222 (541)
253 COG4946 Uncharacterized protei 98.4 3.1E-05 6.8E-10 86.1 20.4 160 89-254 339-507 (668)
254 COG4946 Uncharacterized protei 98.4 1.9E-05 4.1E-10 87.8 18.3 131 80-211 370-508 (668)
255 COG2706 3-carboxymuconate cycl 98.3 0.0017 3.7E-08 70.9 31.3 144 111-255 92-263 (346)
256 KOG2315 Predicted translation 98.3 1.9E-05 4.1E-10 89.4 16.6 148 89-246 249-411 (566)
257 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00095 2.1E-08 74.2 28.8 211 91-321 27-317 (352)
258 KOG3914 WD repeat protein WDR4 98.2 5.8E-06 1.2E-10 90.4 10.9 100 88-189 129-232 (390)
259 COG0823 TolB Periplasmic compo 98.2 4.7E-05 1E-09 86.6 18.3 210 103-342 188-407 (425)
260 KOG4497 Uncharacterized conser 98.1 1E-05 2.2E-10 86.6 9.9 170 77-251 16-194 (447)
261 KOG4532 WD40-like repeat conta 98.1 0.00013 2.8E-09 76.6 16.8 175 79-254 126-321 (344)
262 PF00400 WD40: WD domain, G-be 98.1 1.1E-05 2.3E-10 60.0 6.3 39 139-178 1-39 (39)
263 KOG1334 WD40 repeat protein [G 98.1 3.2E-05 7E-10 86.3 12.7 154 102-255 137-301 (559)
264 KOG3914 WD repeat protein WDR4 98.0 4.1E-05 8.9E-10 83.9 11.7 114 109-225 112-228 (390)
265 KOG4532 WD40-like repeat conta 98.0 0.00083 1.8E-08 70.8 20.2 168 80-248 83-263 (344)
266 KOG1354 Serine/threonine prote 98.0 0.00026 5.5E-09 76.6 16.6 147 105-254 162-348 (433)
267 KOG1832 HIV-1 Vpr-binding prot 98.0 7.4E-06 1.6E-10 96.1 5.2 210 33-262 1072-1293(1516)
268 KOG1334 WD40 repeat protein [G 97.9 5.2E-05 1.1E-09 84.7 11.0 179 77-255 150-356 (559)
269 PLN02919 haloacid dehalogenase 97.9 0.00048 1E-08 86.7 20.6 144 80-224 694-892 (1057)
270 PLN02919 haloacid dehalogenase 97.9 0.00092 2E-08 84.2 22.7 142 110-253 685-876 (1057)
271 KOG1832 HIV-1 Vpr-binding prot 97.9 1E-05 2.2E-10 95.0 5.0 163 102-268 1096-1263(1516)
272 PF08450 SGL: SMP-30/Gluconola 97.9 0.0031 6.7E-08 65.8 23.2 169 80-252 11-200 (246)
273 COG0823 TolB Periplasmic compo 97.8 0.00031 6.6E-09 80.1 15.7 158 92-255 219-389 (425)
274 PF00400 WD40: WD domain, G-be 97.8 2.7E-05 5.8E-10 57.7 4.4 34 102-135 6-39 (39)
275 KOG4190 Uncharacterized conser 97.8 2.5E-05 5.4E-10 87.8 5.8 151 101-254 729-895 (1034)
276 KOG1354 Serine/threonine prote 97.8 0.00031 6.6E-09 76.0 13.6 115 107-221 25-194 (433)
277 KOG4190 Uncharacterized conser 97.8 4.9E-05 1.1E-09 85.5 7.9 148 77-226 743-912 (1034)
278 PF04762 IKI3: IKI3 family; I 97.8 0.0021 4.6E-08 79.9 22.1 141 106-249 208-362 (928)
279 KOG2695 WD40 repeat protein [G 97.7 0.0001 2.2E-09 79.7 8.8 159 85-244 228-401 (425)
280 KOG2314 Translation initiation 97.7 0.00025 5.3E-09 80.5 11.4 136 110-252 213-363 (698)
281 TIGR02658 TTQ_MADH_Hv methylam 97.7 0.029 6.2E-07 62.6 27.5 106 118-226 11-142 (352)
282 KOG2315 Predicted translation 97.7 0.0014 2.9E-08 74.8 17.2 158 89-255 192-374 (566)
283 COG5354 Uncharacterized protei 97.7 0.0015 3.1E-08 73.9 17.1 153 91-258 255-422 (561)
284 KOG1645 RING-finger-containing 97.7 0.00083 1.8E-08 74.0 14.5 152 103-256 189-351 (463)
285 KOG1409 Uncharacterized conser 97.6 0.0003 6.4E-09 76.1 10.5 79 102-181 192-271 (404)
286 PF11768 DUF3312: Protein of u 97.6 0.0035 7.6E-08 72.2 19.7 113 109-224 207-333 (545)
287 KOG4714 Nucleoporin [Nuclear s 97.6 0.00023 4.9E-09 74.6 9.0 96 86-181 154-255 (319)
288 KOG2066 Vacuolar assembly/sort 97.6 0.0015 3.3E-08 77.1 16.0 161 80-250 48-220 (846)
289 KOG2041 WD40 repeat protein [G 97.6 0.0002 4.4E-09 82.9 8.5 143 106-253 13-174 (1189)
290 COG5354 Uncharacterized protei 97.5 0.016 3.6E-07 65.7 23.1 170 78-255 80-294 (561)
291 COG5170 CDC55 Serine/threonine 97.5 0.00052 1.1E-08 73.4 10.8 148 105-255 170-357 (460)
292 KOG2314 Translation initiation 97.5 0.016 3.5E-07 66.3 22.7 176 73-254 214-412 (698)
293 PF07433 DUF1513: Protein of u 97.5 0.013 2.7E-07 63.9 21.2 176 72-254 19-235 (305)
294 KOG1645 RING-finger-containing 97.5 0.0012 2.7E-08 72.7 13.2 94 131-224 175-270 (463)
295 PF08450 SGL: SMP-30/Gluconola 97.5 0.029 6.2E-07 58.6 23.3 166 81-254 51-244 (246)
296 KOG1409 Uncharacterized conser 97.5 0.0014 3E-08 71.1 13.3 174 79-255 34-260 (404)
297 PF15492 Nbas_N: Neuroblastoma 97.5 0.012 2.7E-07 62.7 20.1 178 83-261 10-260 (282)
298 PF07433 DUF1513: Protein of u 97.5 0.021 4.6E-07 62.2 22.3 157 89-254 75-275 (305)
299 PF15492 Nbas_N: Neuroblastoma 97.5 0.043 9.2E-07 58.7 23.7 141 113-255 3-167 (282)
300 KOG2041 WD40 repeat protein [G 97.5 0.0012 2.7E-08 76.6 13.2 103 77-180 22-145 (1189)
301 COG5170 CDC55 Serine/threonine 97.4 0.0016 3.5E-08 69.8 12.4 117 106-222 25-203 (460)
302 KOG1064 RAVE (regulator of V-A 97.4 0.00043 9.2E-09 87.0 8.5 140 80-225 2219-2371(2439)
303 KOG2695 WD40 repeat protein [G 97.3 0.00055 1.2E-08 74.2 7.8 119 81-200 264-401 (425)
304 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.015 3.2E-07 64.6 19.6 231 90-348 22-327 (353)
305 PF04762 IKI3: IKI3 family; I 97.3 0.0074 1.6E-07 75.2 18.3 172 79-254 85-323 (928)
306 KOG1920 IkappaB kinase complex 97.3 0.013 2.9E-07 72.1 19.7 174 77-252 76-306 (1265)
307 KOG1275 PAB-dependent poly(A) 97.3 0.0018 3.9E-08 77.2 11.7 140 76-218 182-340 (1118)
308 KOG2066 Vacuolar assembly/sort 97.3 0.0032 7E-08 74.5 13.6 135 107-255 39-178 (846)
309 PF11768 DUF3312: Protein of u 97.2 0.0011 2.4E-08 76.2 9.7 75 105-182 257-331 (545)
310 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.017 3.6E-07 64.2 18.8 92 116-210 1-119 (353)
311 KOG0309 Conserved WD40 repeat- 97.2 0.00081 1.7E-08 78.5 7.9 167 81-251 82-261 (1081)
312 TIGR03300 assembly_YfgL outer 97.2 0.004 8.7E-08 69.1 13.2 131 81-217 241-376 (377)
313 KOG1912 WD40 repeat protein [G 97.2 0.0026 5.6E-08 74.8 11.7 135 106-245 14-165 (1062)
314 KOG4714 Nucleoporin [Nuclear s 97.2 0.00086 1.9E-08 70.4 7.1 142 80-221 100-255 (319)
315 KOG0309 Conserved WD40 repeat- 97.1 0.0016 3.6E-08 76.0 9.4 135 109-245 69-211 (1081)
316 KOG1275 PAB-dependent poly(A) 97.1 0.0067 1.5E-07 72.6 13.9 173 80-257 146-334 (1118)
317 PF13360 PQQ_2: PQQ-like domai 96.9 0.02 4.4E-07 58.5 14.7 106 118-226 35-146 (238)
318 KOG1008 Uncharacterized conser 96.9 0.00023 4.9E-09 82.0 0.1 169 82-254 71-262 (783)
319 TIGR03300 assembly_YfgL outer 96.9 0.017 3.7E-07 64.1 14.6 137 81-225 65-213 (377)
320 PF14583 Pectate_lyase22: Olig 96.8 0.08 1.7E-06 59.4 19.2 174 79-252 46-254 (386)
321 PRK13616 lipoprotein LpqB; Pro 96.8 0.022 4.8E-07 67.7 15.6 139 106-250 348-511 (591)
322 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.06 1.3E-06 50.4 14.8 99 110-215 2-109 (111)
323 KOG1064 RAVE (regulator of V-A 96.8 0.0058 1.3E-07 77.4 10.4 151 105-261 2206-2367(2439)
324 KOG4640 Anaphase-promoting com 96.7 0.0068 1.5E-07 70.3 10.0 93 107-201 20-115 (665)
325 KOG0882 Cyclophilin-related pe 96.7 0.0049 1.1E-07 68.9 8.5 175 80-255 19-221 (558)
326 PF13360 PQQ_2: PQQ-like domai 96.7 0.055 1.2E-06 55.3 15.9 138 81-224 76-234 (238)
327 smart00320 WD40 WD40 repeats. 96.7 0.0053 1.1E-07 42.0 5.7 39 139-178 2-40 (40)
328 PF02897 Peptidase_S9_N: Proly 96.7 0.39 8.5E-06 54.1 23.6 244 77-345 131-412 (414)
329 KOG1912 WD40 repeat protein [G 96.6 0.054 1.2E-06 64.2 16.0 138 82-219 26-185 (1062)
330 PRK02888 nitrous-oxide reducta 96.6 0.064 1.4E-06 63.4 16.6 92 128-221 295-405 (635)
331 PRK10115 protease 2; Provision 96.5 2.9 6.2E-05 51.0 31.2 228 92-348 154-405 (686)
332 KOG2114 Vacuolar assembly/sort 96.5 0.29 6.2E-06 59.1 21.5 176 77-255 31-234 (933)
333 KOG3621 WD40 repeat-containing 96.4 0.058 1.3E-06 63.5 14.8 143 77-222 41-199 (726)
334 COG3391 Uncharacterized conser 96.4 0.94 2E-05 51.0 24.1 144 110-255 76-226 (381)
335 PRK02888 nitrous-oxide reducta 96.3 0.8 1.7E-05 54.5 23.9 134 113-248 198-387 (635)
336 COG3391 Uncharacterized conser 96.3 0.34 7.4E-06 54.6 20.2 167 83-253 88-270 (381)
337 PF08553 VID27: VID27 cytoplas 96.2 0.06 1.3E-06 65.5 14.2 131 119-255 493-638 (794)
338 PF08953 DUF1899: Domain of un 96.2 0.0027 5.8E-08 53.8 2.0 41 30-70 3-43 (65)
339 KOG3621 WD40 repeat-containing 96.2 0.025 5.3E-07 66.5 10.3 138 106-244 32-179 (726)
340 PF02897 Peptidase_S9_N: Proly 96.1 0.16 3.5E-06 57.1 16.6 142 109-253 125-294 (414)
341 PF10647 Gmad1: Lipoprotein Lp 96.1 0.27 5.8E-06 52.3 16.9 142 109-254 25-184 (253)
342 PF14583 Pectate_lyase22: Olig 96.0 1.1 2.3E-05 50.6 21.9 139 112-255 40-207 (386)
343 KOG0882 Cyclophilin-related pe 96.0 0.071 1.5E-06 60.0 12.5 153 85-242 116-323 (558)
344 smart00320 WD40 WD40 repeats. 95.9 0.011 2.5E-07 40.2 4.0 32 104-135 9-40 (40)
345 PF04053 Coatomer_WDAD: Coatom 95.9 0.14 3E-06 59.0 14.8 131 109-255 34-164 (443)
346 PF15390 DUF4613: Domain of un 95.8 0.38 8.2E-06 56.2 17.2 151 103-255 52-221 (671)
347 KOG4640 Anaphase-promoting com 95.7 0.04 8.7E-07 64.2 9.4 92 150-245 21-115 (665)
348 PF04053 Coatomer_WDAD: Coatom 95.6 0.17 3.6E-06 58.4 14.0 162 80-254 43-213 (443)
349 KOG1920 IkappaB kinase complex 95.6 1.1 2.3E-05 56.2 21.2 157 92-255 54-261 (1265)
350 COG3204 Uncharacterized protei 95.5 0.62 1.3E-05 50.5 16.4 150 102-252 80-249 (316)
351 PF00780 CNH: CNH domain; Int 95.4 0.49 1.1E-05 50.0 15.9 130 118-254 6-155 (275)
352 PF00780 CNH: CNH domain; Int 95.4 1.2 2.5E-05 47.1 18.7 141 79-224 5-169 (275)
353 KOG4649 PQQ (pyrrolo-quinoline 95.4 0.42 9E-06 50.9 14.7 136 76-214 18-159 (354)
354 PRK11138 outer membrane biogen 95.4 0.24 5.3E-06 55.6 14.0 131 82-219 257-393 (394)
355 PF06977 SdiA-regulated: SdiA- 95.1 0.66 1.4E-05 49.5 15.5 151 102-254 16-189 (248)
356 KOG3617 WD40 and TPR repeat-co 95.1 0.049 1.1E-06 65.0 7.2 133 111-247 19-161 (1416)
357 PRK13616 lipoprotein LpqB; Pro 95.0 0.66 1.4E-05 55.4 16.6 129 109-246 398-551 (591)
358 PRK11138 outer membrane biogen 94.9 0.55 1.2E-05 52.7 15.2 139 81-225 120-279 (394)
359 KOG2114 Vacuolar assembly/sort 94.7 1.7 3.7E-05 52.8 18.7 144 79-223 75-246 (933)
360 KOG3630 Nuclear pore complex, 94.7 0.6 1.3E-05 58.0 15.1 148 108-255 101-263 (1405)
361 COG3386 Gluconolactonase [Carb 94.4 5 0.00011 44.2 20.4 144 108-257 111-277 (307)
362 TIGR02604 Piru_Ver_Nterm putat 94.2 1.3 2.9E-05 49.5 15.8 136 109-251 15-199 (367)
363 COG3490 Uncharacterized protei 94.0 7.4 0.00016 42.4 19.9 169 77-255 44-244 (366)
364 PF12234 Rav1p_C: RAVE protein 93.7 1.1 2.4E-05 53.7 14.5 111 108-221 30-157 (631)
365 KOG2395 Protein involved in va 93.7 0.59 1.3E-05 54.0 11.6 136 82-221 347-501 (644)
366 KOG2395 Protein involved in va 93.6 0.6 1.3E-05 53.9 11.5 134 116-255 342-491 (644)
367 PRK10115 protease 2; Provision 93.6 2.4 5.2E-05 51.6 17.6 110 108-221 127-256 (686)
368 KOG1008 Uncharacterized conser 93.4 0.029 6.3E-07 65.3 1.0 131 89-221 127-276 (783)
369 KOG4649 PQQ (pyrrolo-quinoline 93.4 2.1 4.5E-05 45.8 14.4 128 119-252 23-153 (354)
370 PF14870 PSII_BNR: Photosynthe 93.3 6.3 0.00014 43.3 18.6 148 103-253 140-293 (302)
371 PF06977 SdiA-regulated: SdiA- 93.3 10 0.00022 40.6 19.7 179 64-252 27-238 (248)
372 COG3386 Gluconolactonase [Carb 93.1 1.7 3.7E-05 47.8 14.1 104 105-210 160-274 (307)
373 PF08553 VID27: VID27 cytoplas 92.9 1.5 3.2E-05 53.9 14.3 129 89-220 502-647 (794)
374 PF05096 Glu_cyclase_2: Glutam 92.8 6.7 0.00015 42.3 17.5 110 110-223 47-160 (264)
375 PF03178 CPSF_A: CPSF A subuni 92.6 2.5 5.4E-05 46.1 14.6 130 119-254 42-191 (321)
376 PF15390 DUF4613: Domain of un 92.4 1.9 4.1E-05 50.7 13.4 140 106-255 18-175 (671)
377 KOG2079 Vacuolar assembly/sort 91.8 0.73 1.6E-05 57.0 9.8 96 81-179 99-202 (1206)
378 PF12894 Apc4_WD40: Anaphase-p 91.4 0.57 1.2E-05 37.2 5.7 34 107-141 11-44 (47)
379 KOG2444 WD40 repeat protein [G 91.4 1 2.2E-05 47.2 9.0 101 79-180 68-177 (238)
380 PF14783 BBS2_Mid: Ciliary BBS 91.2 4.5 9.7E-05 38.1 12.3 93 79-175 13-109 (111)
381 PF13449 Phytase-like: Esteras 91.2 9.7 0.00021 42.0 17.2 146 106-253 18-232 (326)
382 PF10647 Gmad1: Lipoprotein Lp 90.9 2.6 5.6E-05 44.9 12.0 100 151-255 25-131 (253)
383 PF05694 SBP56: 56kDa selenium 90.9 29 0.00062 40.1 20.5 175 80-255 86-331 (461)
384 PF04841 Vps16_N: Vps16, N-ter 90.9 29 0.00064 39.7 21.2 169 72-248 82-272 (410)
385 PF10214 Rrn6: RNA polymerase 90.7 50 0.0011 41.0 24.4 149 105-255 77-268 (765)
386 PRK13684 Ycf48-like protein; P 90.7 29 0.00063 38.5 20.5 143 107-253 172-320 (334)
387 cd00216 PQQ_DH Dehydrogenases 90.3 6.4 0.00014 45.9 15.5 105 81-189 61-192 (488)
388 KOG3617 WD40 and TPR repeat-co 90.0 0.93 2E-05 54.8 8.1 91 89-180 39-131 (1416)
389 PF12234 Rav1p_C: RAVE protein 89.2 8.5 0.00018 46.3 15.4 104 151-255 31-148 (631)
390 PF14655 RAB3GAP2_N: Rab3 GTPa 88.9 2.4 5.3E-05 48.5 10.3 86 104-189 304-407 (415)
391 PF12894 Apc4_WD40: Anaphase-p 88.9 1 2.2E-05 35.8 5.1 34 149-184 11-44 (47)
392 PF04841 Vps16_N: Vps16, N-ter 88.9 16 0.00035 41.7 17.0 45 92-137 62-109 (410)
393 KOG2444 WD40 repeat protein [G 88.8 1.2 2.6E-05 46.7 7.1 91 119-209 70-163 (238)
394 TIGR03606 non_repeat_PQQ dehyd 88.7 26 0.00056 40.8 18.5 52 109-160 31-89 (454)
395 COG3490 Uncharacterized protei 88.7 12 0.00027 40.7 14.5 102 152-255 70-181 (366)
396 PF06433 Me-amine-dh_H: Methyl 88.7 13 0.00029 41.4 15.4 144 82-226 148-326 (342)
397 cd00216 PQQ_DH Dehydrogenases 88.4 26 0.00057 40.9 18.7 126 121-253 303-455 (488)
398 TIGR03074 PQQ_membr_DH membran 88.0 9.8 0.00021 47.0 15.3 109 118-226 193-350 (764)
399 PF06433 Me-amine-dh_H: Methyl 87.9 3.1 6.7E-05 46.3 10.0 63 130-193 270-333 (342)
400 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.7 22 0.00048 42.1 17.6 74 129-204 441-516 (527)
401 PF05694 SBP56: 56kDa selenium 87.6 13 0.00027 42.9 14.7 148 108-255 181-393 (461)
402 KOG2079 Vacuolar assembly/sort 87.6 1.7 3.7E-05 53.9 8.4 100 118-219 98-202 (1206)
403 PF07569 Hira: TUP1-like enhan 87.4 3.3 7.2E-05 43.3 9.5 64 161-224 21-99 (219)
404 PF14870 PSII_BNR: Photosynthe 87.2 19 0.00042 39.6 15.6 144 109-255 105-252 (302)
405 TIGR02604 Piru_Ver_Nterm putat 87.1 24 0.00052 39.5 16.8 99 108-210 72-202 (367)
406 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.8 21 0.00045 42.3 16.7 80 172-253 441-521 (527)
407 COG5167 VID27 Protein involved 86.8 13 0.00028 43.3 14.1 136 115-255 475-623 (776)
408 PF10313 DUF2415: Uncharacteri 86.7 1.7 3.6E-05 34.1 5.0 32 150-181 1-34 (43)
409 COG1506 DAP2 Dipeptidyl aminop 85.3 95 0.0021 37.5 24.1 144 102-255 54-235 (620)
410 KOG2377 Uncharacterized conser 85.3 9.7 0.00021 43.8 12.1 104 148-255 65-173 (657)
411 PLN00033 photosystem II stabil 85.1 43 0.00094 38.3 17.6 139 109-253 240-388 (398)
412 PF14761 HPS3_N: Hermansky-Pud 85.1 16 0.00034 38.3 12.8 102 120-223 29-166 (215)
413 PF08596 Lgl_C: Lethal giant l 84.1 17 0.00038 41.4 13.9 136 77-220 9-173 (395)
414 KOG4499 Ca2+-binding protein R 83.7 21 0.00046 38.0 12.9 99 111-210 161-273 (310)
415 PF03178 CPSF_A: CPSF A subuni 81.9 16 0.00035 39.7 12.2 125 91-221 62-203 (321)
416 KOG1897 Damage-specific DNA bi 81.5 29 0.00063 43.4 14.8 157 93-253 752-931 (1096)
417 PF14781 BBS2_N: Ciliary BBSom 81.2 30 0.00066 33.7 12.1 109 113-223 4-128 (136)
418 KOG3630 Nuclear pore complex, 81.2 54 0.0012 41.8 16.9 123 85-210 118-262 (1405)
419 COG1770 PtrB Protease II [Amin 80.4 1.5E+02 0.0032 36.1 29.1 281 55-360 113-420 (682)
420 PF08596 Lgl_C: Lethal giant l 80.4 32 0.00069 39.3 14.2 182 71-253 87-324 (395)
421 TIGR03606 non_repeat_PQQ dehyd 78.8 57 0.0012 38.0 15.7 107 148-255 28-165 (454)
422 TIGR02276 beta_rpt_yvtn 40-res 77.0 12 0.00026 27.6 6.6 40 117-157 1-41 (42)
423 TIGR03074 PQQ_membr_DH membran 76.0 1.6E+02 0.0034 36.8 19.2 144 82-226 261-483 (764)
424 KOG1520 Predicted alkaloid syn 75.5 92 0.002 35.4 15.5 179 74-254 69-283 (376)
425 PF10168 Nup88: Nuclear pore c 75.5 37 0.00081 41.8 13.6 75 108-182 85-181 (717)
426 PF07995 GSDH: Glucose / Sorbo 73.3 33 0.0007 38.0 11.6 100 109-210 3-132 (331)
427 PF07995 GSDH: Glucose / Sorbo 73.2 29 0.00064 38.4 11.2 105 151-258 3-136 (331)
428 KOG1916 Nuclear protein, conta 73.2 2.3 4.9E-05 52.0 2.5 113 110-224 186-327 (1283)
429 COG4257 Vgb Streptogramin lyas 72.8 70 0.0015 35.0 13.1 130 108-252 62-205 (353)
430 KOG2377 Uncharacterized conser 72.1 42 0.0009 38.9 11.8 116 106-224 65-189 (657)
431 KOG2247 WD40 repeat-containing 71.4 0.73 1.6E-05 52.9 -1.9 141 108-254 35-178 (615)
432 KOG4460 Nuclear pore complex, 71.2 27 0.00058 41.0 10.2 77 109-185 105-203 (741)
433 PF07569 Hira: TUP1-like enhan 70.8 27 0.00059 36.5 9.6 69 115-185 18-100 (219)
434 PRK13684 Ycf48-like protein; P 70.6 1.1E+02 0.0024 33.9 14.9 110 106-219 213-330 (334)
435 PHA03098 kelch-like protein; P 70.3 1.4E+02 0.003 34.9 16.6 127 92-224 312-468 (534)
436 PF10313 DUF2415: Uncharacteri 70.3 16 0.00036 28.6 5.8 31 108-138 1-34 (43)
437 KOG2247 WD40 repeat-containing 70.1 0.74 1.6E-05 52.8 -2.2 136 75-211 40-179 (615)
438 PF05935 Arylsulfotrans: Aryls 70.0 2.1E+02 0.0045 33.5 17.7 132 82-224 128-305 (477)
439 PF05935 Arylsulfotrans: Aryls 69.8 2.3E+02 0.0049 33.2 18.1 85 121-210 117-208 (477)
440 COG3204 Uncharacterized protei 69.4 50 0.0011 36.3 11.3 109 146-255 82-200 (316)
441 PF11715 Nup160: Nucleoporin N 68.7 18 0.00039 42.6 8.7 73 117-189 156-257 (547)
442 PLN00033 photosystem II stabil 68.2 1.8E+02 0.004 33.3 16.3 107 106-217 279-396 (398)
443 PF12768 Rax2: Cortical protei 67.2 1.2E+02 0.0027 33.0 14.0 114 129-245 16-146 (281)
444 KOG1897 Damage-specific DNA bi 66.8 3.6E+02 0.0078 34.4 20.9 147 107-254 487-648 (1096)
445 PF14269 Arylsulfotran_2: Aryl 66.3 2.1E+02 0.0045 31.5 15.7 71 110-180 146-220 (299)
446 COG3823 Glutamine cyclotransfe 64.3 69 0.0015 33.8 10.6 163 91-258 68-251 (262)
447 KOG4499 Ca2+-binding protein R 64.1 98 0.0021 33.2 11.8 57 112-168 216-272 (310)
448 PHA02713 hypothetical protein; 64.0 2.8E+02 0.0061 33.1 17.5 124 92-221 321-489 (557)
449 TIGR03032 conserved hypothetic 63.8 90 0.002 34.8 12.0 108 133-248 189-317 (335)
450 PHA02713 hypothetical protein; 63.0 1.1E+02 0.0024 36.5 13.8 127 92-224 368-537 (557)
451 PHA03098 kelch-like protein; P 62.7 2.1E+02 0.0046 33.4 16.1 128 92-224 359-515 (534)
452 PF03022 MRJP: Major royal jel 61.9 2.4E+02 0.0052 30.7 18.2 168 90-259 44-259 (287)
453 COG1520 FOG: WD40-like repeat 61.5 70 0.0015 35.6 11.3 72 118-192 68-141 (370)
454 KOG4441 Proteins containing BT 61.3 1.7E+02 0.0037 35.1 15.0 132 91-226 301-458 (571)
455 TIGR03118 PEPCTERM_chp_1 conse 61.2 1.7E+02 0.0036 32.6 13.4 113 109-222 24-172 (336)
456 PRK13615 lipoprotein LpqB; Pro 61.1 2.2E+02 0.0047 34.2 15.6 139 110-253 336-487 (557)
457 PF05096 Glu_cyclase_2: Glutam 60.9 2.5E+02 0.0054 30.5 16.0 127 80-211 100-250 (264)
458 PF14781 BBS2_N: Ciliary BBSom 60.5 1.2E+02 0.0025 29.8 10.9 84 156-244 5-101 (136)
459 COG5167 VID27 Protein involved 60.4 89 0.0019 36.8 11.6 109 112-222 513-634 (776)
460 TIGR02276 beta_rpt_yvtn 40-res 60.0 32 0.0007 25.2 5.8 39 161-199 2-41 (42)
461 COG4590 ABC-type uncharacteriz 59.9 52 0.0011 38.1 9.5 105 118-223 279-389 (733)
462 PF08728 CRT10: CRT10; InterP 59.8 3.1E+02 0.0066 34.0 16.6 84 649-740 542-627 (717)
463 PF14655 RAB3GAP2_N: Rab3 GTPa 59.7 1.1E+02 0.0025 35.2 12.6 89 112-201 6-118 (415)
464 COG1770 PtrB Protease II [Amin 59.7 2.7E+02 0.0059 34.0 15.8 113 109-224 130-260 (682)
465 PF10214 Rrn6: RNA polymerase 59.6 1.5E+02 0.0032 36.9 14.6 112 109-222 147-278 (765)
466 KOG1916 Nuclear protein, conta 59.5 10 0.00022 46.7 4.3 103 82-185 196-328 (1283)
467 PF07250 Glyoxal_oxid_N: Glyox 59.2 60 0.0013 34.7 9.6 123 131-255 48-189 (243)
468 COG1520 FOG: WD40-like repeat 58.2 1.8E+02 0.004 32.3 13.9 108 80-190 67-181 (370)
469 TIGR02171 Fb_sc_TIGR02171 Fibr 56.4 57 0.0012 40.9 9.9 87 164-252 320-415 (912)
470 COG5290 IkappaB kinase complex 55.3 41 0.00088 41.3 8.1 93 153-249 250-350 (1243)
471 PF12768 Rax2: Cortical protei 54.5 1.8E+02 0.004 31.7 12.6 93 90-183 15-126 (281)
472 PF14761 HPS3_N: Hermansky-Pud 54.0 48 0.001 34.8 7.6 48 204-253 30-77 (215)
473 KOG4441 Proteins containing BT 53.3 4.8E+02 0.01 31.4 18.2 106 116-224 282-408 (571)
474 COG4257 Vgb Streptogramin lyas 53.1 73 0.0016 34.9 8.9 103 150-253 62-165 (353)
475 KOG3616 Selective LIM binding 53.0 1.4E+02 0.003 36.7 11.8 111 104-219 11-125 (1636)
476 PF07676 PD40: WD40-like Beta 52.7 45 0.00097 24.5 5.4 34 184-217 1-38 (39)
477 PF03088 Str_synth: Strictosid 52.3 91 0.002 28.2 8.2 46 168-213 33-78 (89)
478 PF11715 Nup160: Nucleoporin N 51.6 31 0.00067 40.7 6.6 41 108-148 215-259 (547)
479 COG1506 DAP2 Dipeptidyl aminop 51.6 5.1E+02 0.011 31.3 17.2 90 110-208 15-117 (620)
480 PF10168 Nup88: Nuclear pore c 50.3 2.1E+02 0.0046 35.4 13.5 74 149-224 84-183 (717)
481 PF08728 CRT10: CRT10; InterP 49.5 1.4E+02 0.0031 36.7 11.7 109 72-180 105-246 (717)
482 KOG1898 Splicing factor 3b, su 48.2 4.2E+02 0.0092 34.1 15.3 153 92-248 854-1032(1205)
483 PF12657 TFIIIC_delta: Transcr 45.2 1.2E+02 0.0026 30.3 8.8 31 151-181 87-122 (173)
484 smart00020 Tryp_SPc Trypsin-li 45.1 23 0.00049 35.7 3.7 71 636-718 29-111 (229)
485 KOG4460 Nuclear pore complex, 44.0 2.2E+02 0.0048 33.9 11.4 74 151-225 105-203 (741)
486 PF07250 Glyoxal_oxid_N: Glyox 43.8 1.1E+02 0.0025 32.6 8.8 82 174-256 48-138 (243)
487 smart00564 PQQ beta-propeller 42.9 50 0.0011 23.0 4.2 26 120-145 7-32 (33)
488 PF03088 Str_synth: Strictosid 42.6 1.9E+02 0.0042 26.1 8.8 41 127-169 35-75 (89)
489 PLN02153 epithiospecifier prot 40.7 5E+02 0.011 28.4 13.7 65 118-184 85-171 (341)
490 PRK13613 lipoprotein LpqB; Pro 39.9 7E+02 0.015 30.3 15.5 140 109-253 364-524 (599)
491 PF14727 PHTB1_N: PTHB1 N-term 39.4 6.6E+02 0.014 29.1 19.2 140 80-220 36-204 (418)
492 KOG1898 Splicing factor 3b, su 39.4 4E+02 0.0087 34.3 13.3 96 130-226 854-968 (1205)
493 COG5276 Uncharacterized conser 39.2 5.9E+02 0.013 28.4 21.9 136 109-254 88-232 (370)
494 PF01011 PQQ: PQQ enzyme repea 38.9 70 0.0015 23.7 4.6 27 121-147 2-28 (38)
495 PRK13614 lipoprotein LpqB; Pro 37.5 6.5E+02 0.014 30.4 14.6 140 109-254 344-504 (573)
496 smart00036 CNH Domain found in 35.8 4.9E+02 0.011 28.4 12.5 109 111-222 5-133 (302)
497 PHA02790 Kelch-like protein; P 35.6 7.7E+02 0.017 28.7 15.2 124 91-223 331-473 (480)
498 PF14269 Arylsulfotran_2: Aryl 35.3 6.4E+02 0.014 27.7 17.1 112 108-220 57-220 (299)
499 TIGR03548 mutarot_permut cycli 33.8 6.4E+02 0.014 27.3 13.3 65 118-184 123-198 (323)
500 PF13449 Phytase-like: Esteras 33.7 6.8E+02 0.015 27.5 21.2 150 109-260 86-312 (326)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.7e-25 Score=237.60 Aligned_cols=205 Identities=24% Similarity=0.344 Sum_probs=174.7
Q ss_pred cCCCccccceeecCCcceeecCCCCeEEEE--------------EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCC
Q 004203 47 VAPRTKHSSKRLLGETARKCSGSFSQIFEA--------------GRDARRGLASWVEAESLHHLRPKYC----PLSPPPR 108 (768)
Q Consensus 47 is~~~~kv~k~~wd~s~~~~s~s~~~l~~a--------------~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~ 108 (768)
++.+..+.+...|+.....|+......... ..+.+..|++++.||++++|+.... .|.+|..
T Consensus 183 fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~ 262 (459)
T KOG0272|consen 183 FSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLA 262 (459)
T ss_pred eecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchh
Confidence 444556666667777777776433222221 1124678999999999999999874 6889999
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR 188 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l 188 (768)
.|..++|+|+|++|++++.|.+-++||+++++.+....||...|.+++|+| ||.++++|+.|..-+|||+++|.++..+
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEe
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999887
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 189 D-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 189 ~-h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
. |.+.|.+++|+|+|..||+|+. +.++|||++...... .+..|.+-|+.|.|+|+..+++++++
T Consensus 342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred cccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---ecccccchhhheEecccCCeEEEEcc
Confidence 4 8999999999999999999995 559999999988644 78899999999999996555666554
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.2e-24 Score=233.72 Aligned_cols=238 Identities=20% Similarity=0.208 Sum_probs=195.7
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203 74 FEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (768)
Q Consensus 74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPD--G~~LaSgS~DgtVrVWDl~tg~~l~~l~g 147 (768)
......++..|++++.+|.+++|+...+ +|.+|+..|.++.|+|. +..|++|+.||+|++|++++...+..|.+
T Consensus 180 ~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g 259 (459)
T KOG0272|consen 180 GCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG 259 (459)
T ss_pred eeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhc
Confidence 3345568899999999999999999877 58899999999999995 67999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (768)
Q Consensus 148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~ 225 (768)
|...|..++|+| +|++|++++.|.+-+|||+++++.+.. -+|...|.+++|++||.++++|+-|. -+|||++++..+
T Consensus 260 H~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i 338 (459)
T KOG0272|consen 260 HLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI 338 (459)
T ss_pred chhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEE
Confidence 999999999999 999999999999999999999876554 46999999999999999999999665 999999999975
Q ss_pred cCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCC------------------CeE
Q 004203 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPP------------------PVI 282 (768)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~------------------~~V 282 (768)
. .+.+|.+.|.+|.|+|+|..++++++ +||++..+. +.+..+|.+... ..+
T Consensus 339 m---~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 339 M---FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred E---EecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc---ceecccccchhhheEecccCCeEEEEcccCcce
Confidence 5 78889999999999999998887665 888885443 444445433211 233
Q ss_pred EEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203 283 CMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ 321 (768)
Q Consensus 283 ~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~ 321 (768)
.+|...+ -.+.....+....+..+.+++|+..|+-.
T Consensus 413 kiWs~~~---~~~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 413 KIWSTRT---WSPLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred eeecCCC---cccchhhcCCccceEEEEeccCCceEEEe
Confidence 3444332 23333444566678888889998888863
No 3
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=2.3e-22 Score=230.26 Aligned_cols=264 Identities=18% Similarity=0.203 Sum_probs=186.9
Q ss_pred CCCcceecccccccccCCCccccceeecC-CcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCe
Q 004203 32 NSRLRNVFGLLAQREVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRST 110 (768)
Q Consensus 32 ssk~rnIf~~~akrEis~~~~kv~k~~wd-~s~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~V 110 (768)
.|||||+|++..|+|.+|.+.++....|+ .+.+.++..+... .+...++..++.-.+.|.+ ......+.+|.+.|
T Consensus 3 ~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~-~w~~~gg~~v~~~~~~G~~---~~~~~~l~GH~~~V 78 (493)
T PTZ00421 3 VSRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAV-PWQQLGSTAVLKHTDYGKL---ASNPPILLGQEGPI 78 (493)
T ss_pred cccccccccccCCcccceeccccccccCCCCCcEeECCceEEE-EEecCCceEEeeccccccC---CCCCceEeCCCCCE
Confidence 58999999999999999999999999999 5665565444222 1111112111111111110 01112467899999
Q ss_pred EEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 004203 111 IAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA 182 (768)
Q Consensus 111 tslafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg 182 (768)
++++|+| |+++|++++.|++|++||+.++ +.+..+.+|...|.+++|+|.+.++|++++.|++|+|||++++
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg 158 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG 158 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999 8999999999999999999765 3567889999999999999944679999999999999999999
Q ss_pred cEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCC-eEEEEEccCCCeEEEEEeeCCc
Q 004203 183 ECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRS-LRAVHFHPHAAPLLLTAEVNDL 259 (768)
Q Consensus 183 ~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~-V~sVaFSPDG~~LlaS~svwdl 259 (768)
+....+. |...|.+++|+|+|.+|++++.| .|++||+++++... .+..|... +..+.|.+++..+++++....
T Consensus 159 ~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s- 234 (493)
T PTZ00421 159 KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVEAHASAKSQRCLWAKRKDLIITLGCSKS- 234 (493)
T ss_pred eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEecCCCCcceEEEEcCCCCeEEEEecCCC-
Confidence 8887765 78899999999999999999955 59999999877533 45566543 457889999887776542100
Q ss_pred CCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEe
Q 004203 260 DSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH 322 (768)
Q Consensus 260 ~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~ 322 (768)
..+.+.+|+....... +...........+.+.|++|+..+++..
T Consensus 235 ------------------~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 235 ------------------QQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred ------------------CCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 0123445554322111 1111111122345789999999888753
No 4
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.92 E-value=3.8e-24 Score=228.19 Aligned_cols=219 Identities=18% Similarity=0.244 Sum_probs=178.5
Q ss_pred CCCCCCcceecccccccccCCCccccceeecCCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 004203 29 NHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPR 108 (768)
Q Consensus 29 ~~rssk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~gH~~ 108 (768)
-+|+||||++|++.+|+|.||.++++.+..||+.++..++.|-.+..-+..++..++- .-..+-..|.....+.+|++
T Consensus 5 ~vR~SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~Vi--Pl~k~Gr~d~~~P~v~GHt~ 82 (472)
T KOG0303|consen 5 VVRSSKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVI--PLVKTGRMDASYPLVCGHTA 82 (472)
T ss_pred hhhhhhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeec--ccccccccCCCCCCccCccc
Confidence 3799999999999999999999999999999999988887775555544333333332 22333334566677899999
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203 109 STIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (768)
Q Consensus 109 ~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (768)
+|.+++|+| +...||+||.|.+|+||.+-.+ +.+..|.||...|.-+.|||.-.+.|++++.|.+|.+||+.
T Consensus 83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~ 162 (472)
T KOG0303|consen 83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG 162 (472)
T ss_pred cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence 999999999 8889999999999999998553 45788999999999999999888999999999999999999
Q ss_pred CCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCC-CCeEEEEEccCCCeEEEE
Q 004203 181 TAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTR-RSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 181 sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~-~~V~sVaFSPDG~~LlaS 253 (768)
+|+.+.++.|.+.|.++.|+-||.+|++.+.|+ |+|||.++++... ....|. ..-..+.|-.+|. ++++
T Consensus 163 tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~---e~~~heG~k~~Raifl~~g~-i~tT 233 (472)
T KOG0303|consen 163 TGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS---EGVAHEGAKPARAIFLASGK-IFTT 233 (472)
T ss_pred CCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee---ecccccCCCcceeEEeccCc-eeee
Confidence 999999999999999999999999999999665 9999999998654 223342 2234455666666 4443
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.91 E-value=5.8e-23 Score=211.66 Aligned_cols=243 Identities=17% Similarity=0.183 Sum_probs=190.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC
Q 004203 79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR 149 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~---------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~ 149 (768)
.+...+++.+.|+++.+|++... .|.||...|..++.++||+++++++.|+++++||+.+|+....|.||+
T Consensus 26 ~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~ 105 (315)
T KOG0279|consen 26 KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT 105 (315)
T ss_pred CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC
Confidence 46788999999999999998743 478999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCCeEEEEEcCC--CCEEEEEECCe-EEEEEcCCCcc
Q 004203 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHAS--GELLAVASGHK-LYIWRYNMREE 224 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~--h~~~V~svafSPD--G~~LatgSdd~-I~IWDl~t~~~ 224 (768)
..|.+++|++ |...+++|++|++|++||+.......... +.+.|.++.|+|+ ..+|+.++.|+ +++||+++.+.
T Consensus 106 ~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 106 KDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 9999999999 99999999999999999997644333333 3678999999998 66889888666 99999999886
Q ss_pred ccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc------------CCCCeEEEecC
Q 004203 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR------------YPPPVICMAGA 287 (768)
Q Consensus 225 ~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~------------~p~~~V~l~d~ 287 (768)
.. ...+|...++.+++||||...+.++. .||++.++....+....-... ...+.|.+|+.
T Consensus 185 ~~---~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 185 RT---TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDL 261 (315)
T ss_pred hh---ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEec
Confidence 44 67889999999999999995555443 899987766443322111100 12355777887
Q ss_pred CCCCCCC-cccc-----cCCCCCCceEEEEecCCCEEEEEecCC
Q 004203 288 HSSSHPG-LAEE-----VPLITPPFLRPSFVRDDERISLQHTEH 325 (768)
Q Consensus 288 ~s~d~~~-L~~~-----~~~~slpil~psFSpDG~rIv~~~~d~ 325 (768)
.+..... |..+ .......++..+||+||..+..+..+.
T Consensus 262 ~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 262 ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 6543321 1111 112234466899999999999876644
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.3e-23 Score=220.23 Aligned_cols=243 Identities=19% Similarity=0.267 Sum_probs=191.6
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCeE
Q 004203 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-----DGKTLASTHGDHTVKIIDCQTGSC 141 (768)
Q Consensus 72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSP-----DG~~LaSgS~DgtVrVWDl~tg~~ 141 (768)
.+.++...+++.|++|+.||+|++||.+++ .|.+|+..|++++|-| ..++|++++.||+|+|||+..+.+
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~ 239 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC 239 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE
Confidence 345556678999999999999999999876 5889999999999976 678999999999999999999999
Q ss_pred EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEc-----------CCCC-----
Q 004203 142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFH-----------ASGE----- 204 (768)
Q Consensus 142 l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafS-----------PDG~----- 204 (768)
+..+.||+.+|+|++|-- ..+|++|+.|++|++|+...|.+.+++ +|...|+.++.+ |.++
T Consensus 240 ~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred EEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 999999999999999953 679999999999999999999988876 477788877665 3343
Q ss_pred --------------------EEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC--C
Q 004203 205 --------------------LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD--S 261 (768)
Q Consensus 205 --------------------~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~--s 261 (768)
.|++++||. +.+|+-...+. ....+.+|..-|+.+.||||++++++++-+..++ .
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc--chhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 499999876 99998765543 3346789999999999999999877765433222 2
Q ss_pred CCcceeEeecCCcccC-----------------CCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203 262 SESSLTLATSPGYWRY-----------------PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ 321 (768)
Q Consensus 262 g~~~~~L~t~~G~~~~-----------------p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~ 321 (768)
++....+.++.||... ....+.+|+..+ ..+..+.++..-..+.+-|+|||++++.+
T Consensus 396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t---kKl~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT---KKLKQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee---eeecccCCCCCceEEEEEecCCCceeecC
Confidence 3344566777777541 113344444333 34556667777778899999999999863
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=2.6e-23 Score=237.11 Aligned_cols=180 Identities=23% Similarity=0.327 Sum_probs=166.1
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
...+.+.|+++++|.+||+|.+.+. .++||..+|.++.|+|-|-+|||+|.|++-++|..+..+.++.|.||...|
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV 538 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDV 538 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccccc
Confidence 4468899999999999999999986 478999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI 230 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~ 230 (768)
.|+.||| +..++++||.|.+||+||+.+|..++.+ +|.++|.+++|+|+|++|++|+.++ |++||+.++.... .
T Consensus 539 ~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~---~ 614 (707)
T KOG0263|consen 539 DCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK---Q 614 (707)
T ss_pred ceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh---h
Confidence 9999999 9999999999999999999999999986 6999999999999999999999665 9999999988654 6
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEe-----eCCcC
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD 260 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~ 260 (768)
+.+|.+.|.++.||.||..|++++. +||+.
T Consensus 615 l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 615 LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred hhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 7889999999999999998777766 55554
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.90 E-value=7.3e-23 Score=233.47 Aligned_cols=218 Identities=22% Similarity=0.320 Sum_probs=184.3
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----------------------------------CCCCCCCCeEEEEEC
Q 004203 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----------------------------------PLSPPPRSTIAAAFS 116 (768)
Q Consensus 72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~-----------------------------------~L~gH~~~VtslafS 116 (768)
.......++...|+.|-.|..|++|.+... ++.+|.++|.++.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 344446677888888899999999998621 256899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeE
Q 004203 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIA 195 (768)
Q Consensus 117 PDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~ 195 (768)
||.++|+++|.|++||+|.+.+..++..++||..+|+.+.|+| .|-+|||++.|++.++|......+.+.+ +|...|.
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~ 539 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVD 539 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhcccccccc
Confidence 9999999999999999999999999999999999999999999 9999999999999999999998888886 5899999
Q ss_pred EEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004203 196 SIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA 269 (768)
Q Consensus 196 svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~ 269 (768)
|+.|+|++.++++||.|+ +++||+.++..++ .+.+|..+|.+++|||+|++|++++. +||+..+.....+.
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence 999999999999999766 9999999998766 67899999999999999999888765 55555432222221
Q ss_pred ecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203 270 TSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE 324 (768)
Q Consensus 270 t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d 324 (768)
+| ..-+....||+||..++....|
T Consensus 617 ---~H----------------------------t~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 617 ---GH----------------------------TGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred ---cc----------------------------cCceeEEEEecCCCEEEecCCC
Confidence 22 2234478999999999985443
No 9
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=1.1e-20 Score=218.54 Aligned_cols=212 Identities=16% Similarity=0.179 Sum_probs=168.0
Q ss_pred CCCcceecccccccccCCCccccceeecCCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCC
Q 004203 32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPP 107 (768)
Q Consensus 32 ssk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~ 107 (768)
-++|||+|+...+.. |.+.++....|+.....++..+..+..-. . .|+.++.|++|+.... .+.+|.
T Consensus 4 ~~~~~~~~~~~~~~~--y~diri~~~~~~s~~ia~n~~~~A~~w~~-~------gGG~~gvI~L~~~~r~~~v~~L~gH~ 74 (568)
T PTZ00420 4 VPLIKNLYPDPSNNL--FDDLRICSRVIDSCGIACSSGFVAVPWEV-E------GGGLIGAIRLENQMRKPPVIKLKGHT 74 (568)
T ss_pred cchhhhcCCchhhCe--eccEEccccccCceeEeeCCCeEEEEEEc-C------CCCceeEEEeeecCCCceEEEEcCCC
Confidence 389999999977655 88999988899888877664443322111 1 2456788999987654 478999
Q ss_pred CCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCe--------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203 108 RSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS--------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (768)
Q Consensus 108 ~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg~--------~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (768)
+.|.+++|+|+ +.+|++|+.|++|+|||+.++. .+..+.+|...|.+++|+|++..++++++.|++|+|||
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWD 154 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWD 154 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEE
Confidence 99999999996 8999999999999999997642 34567899999999999994344668999999999999
Q ss_pred CCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecCCCCeE-----EEEEccCCCeEEE
Q 004203 179 ASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLR-----AVHFHPHAAPLLL 252 (768)
Q Consensus 179 l~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~-----sVaFSPDG~~Lla 252 (768)
+++++....+.+...|.+++|+|+|.+|++++. +.|+|||+++++... .+.+|...+. ...|++++.+|++
T Consensus 155 l~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~g~~~s~~v~~~~fs~d~~~IlT 231 (568)
T PTZ00420 155 IENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHDGGKNTKNIWIDGLGGDDNYILS 231 (568)
T ss_pred CCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEecccCCceeEEEEeeeEcCCCCEEEE
Confidence 999988877778889999999999999998885 459999999887543 5566765543 3345689888887
Q ss_pred EEe
Q 004203 253 TAE 255 (768)
Q Consensus 253 S~s 255 (768)
++.
T Consensus 232 tG~ 234 (568)
T PTZ00420 232 TGF 234 (568)
T ss_pred EEc
Confidence 663
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.89 E-value=6.5e-22 Score=203.99 Aligned_cols=217 Identities=20% Similarity=0.228 Sum_probs=170.3
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC--CC
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--RR 150 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--~g 150 (768)
...++...++++.|+.+++||+.++ +|.+|...|.+++|++|.+.|++|+.|.+|++||+... +..++..+ .+
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHRE 149 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcC
Confidence 3468899999999999999999985 58999999999999999999999999999999998754 44444333 78
Q ss_pred CcEEEEEccCC-CCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccC
Q 004203 151 TPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSS 227 (768)
Q Consensus 151 ~V~sVafSP~d-g~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~ 227 (768)
.|.+++|+|.. ..+|++++.|++|++||+++-+.... .+|.+.++.++++|||.++++|+. +.+.+||++.++..
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l-- 227 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL-- 227 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee--
Confidence 99999999943 67999999999999999999887666 479999999999999999999985 45999999998763
Q ss_pred CeEeecCCCCeEEEEEccCCCeEEEEEe----eCCcCCCCcceeEee-cCCcccCCCCeEEEecCCCCCCCCcccc
Q 004203 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSESSLTLAT-SPGYWRYPPPVICMAGAHSSSHPGLAEE 298 (768)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPDG~~LlaS~s----vwdl~sg~~~~~L~t-~~G~~~~p~~~V~l~d~~s~d~~~L~~~ 298 (768)
...++...|++++|+|+...|+.... +|++........+.. ..|.........++.-..+.+..+|...
T Consensus 228 --ysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 228 --YSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAG 301 (315)
T ss_pred --EeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEee
Confidence 46788999999999999887766443 898886655443321 1111111223444444445555555544
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.4e-22 Score=211.72 Aligned_cols=244 Identities=15% Similarity=0.208 Sum_probs=185.2
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEec
Q 004203 73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLHG 147 (768)
Q Consensus 73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l-~~l~g 147 (768)
+.+....++..|++|+-|.++++||+.+. +.++|..-|.|++|+|||+.||+|+.||.|++||.++|+++ ..|.+
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g 198 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG 198 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC
Confidence 34445668999999999999999999987 57899999999999999999999999999999999998765 78999
Q ss_pred CCCCcEEEEEccC----CCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCC
Q 004203 148 HRRTPWVVRFHPL----NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221 (768)
Q Consensus 148 H~g~V~sVafSP~----dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t 221 (768)
|...|++++|.|. ..++|++++.||+|+|||+..++++..+ +|..+|+|+.|--+| +|++++.|+ |++|+...
T Consensus 199 H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 199 HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD 277 (480)
T ss_pred cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccc
Confidence 9999999999872 4568999999999999999999998885 699999999998655 788888554 99999988
Q ss_pred CccccCCeEeecCCCCeEEEEEc-----------cCCCe-------------------------EEEEEeeCCcCCC---
Q 004203 222 REETSSPRIVLRTRRSLRAVHFH-----------PHAAP-------------------------LLLTAEVNDLDSS--- 262 (768)
Q Consensus 222 ~~~~~~~~~l~~h~~~V~sVaFS-----------PDG~~-------------------------LlaS~svwdl~sg--- 262 (768)
+.... .+.+|..+|+.++.+ |.+++ +++++....+--|
T Consensus 278 G~~~r---~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 278 GKLCR---ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred hhHHH---hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence 87654 678899999988877 33444 5555542222111
Q ss_pred CcceeEeecCCccc------CCC-----------CeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203 263 ESSLTLATSPGYWR------YPP-----------PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT 323 (768)
Q Consensus 263 ~~~~~L~t~~G~~~------~p~-----------~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~ 323 (768)
.....+....||.. |.+ ..|.+|+..++....... +.-.+.+.++||.|.+.|+....
T Consensus 355 ~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR---GHv~~VYqvawsaDsRLlVS~Sk 429 (480)
T KOG0271|consen 355 KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR---GHVAAVYQVAWSADSRLLVSGSK 429 (480)
T ss_pred ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh---hccceeEEEEeccCccEEEEcCC
Confidence 12223333344432 222 445666655554433332 34446678899999988886433
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=4.5e-21 Score=218.14 Aligned_cols=188 Identities=29% Similarity=0.422 Sum_probs=160.2
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeC------CCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEec
Q 004203 75 EAGRDARRGLASWVEAESLHHLRP------KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCLKVLHG 147 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~------~t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl-~tg~~l~~l~g 147 (768)
.....++..+++++.++.+++|+. ....+.+|...|.+++|+||++++++++.|++|+|||+ ..+.+++++++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 344567888999999999999999 33456799999999999999999999999999999999 56689999999
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (768)
Q Consensus 148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~ 225 (768)
|...|++++|+| +++++++|+.|++|+|||++++++++.+. |.+.|.+++|++++.+|++++.++ |++||+.++...
T Consensus 245 H~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 245 HSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred CCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 999999999999 77999999999999999999999999875 888999999999999999998554 999999998732
Q ss_pred cCCeEeecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCc
Q 004203 226 SSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSES 264 (768)
Q Consensus 226 ~~~~~l~~h~~--~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~ 264 (768)
....+.++.. .++.+.|+|+++++++... .|++..+..
T Consensus 324 -~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 324 -CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred -eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 0112334433 6999999999999988765 556654433
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.87 E-value=1.7e-20 Score=194.56 Aligned_cols=217 Identities=16% Similarity=0.163 Sum_probs=173.3
Q ss_pred ccCCCccccceeecCCcceeecCCC------------CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------CC
Q 004203 46 EVAPRTKHSSKRLLGETARKCSGSF------------SQIFEAGRDARRGLASWVEAESLHHLRPKYC----------PL 103 (768)
Q Consensus 46 Eis~~~~kv~k~~wd~s~~~~s~s~------------~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----------~L 103 (768)
....+.++.....-|...+.|+.-. -....+....+..++.++-|....+|++.+. ++
T Consensus 62 ~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l 141 (343)
T KOG0286|consen 62 DWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL 141 (343)
T ss_pred EecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee
Confidence 4445555555555555555554211 1233345567888888888988888888743 47
Q ss_pred CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 004203 104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE 183 (768)
Q Consensus 104 ~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~ 183 (768)
.+|++.+.|+.|-+ ...|+++|.|.++.+||+++|+.+..|.||.+.|.++.++|.+++.+++|+-|+..+|||++.+.
T Consensus 142 ~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred cCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 89999999999997 55778999999999999999999999999999999999999899999999999999999999999
Q ss_pred EEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----e
Q 004203 184 CIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----V 256 (768)
Q Consensus 184 ~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----v 256 (768)
++++| +|+..|++++|.|+|.-+++|++|. .++||++...+.. ......-...|++++||..|++|+++.. +
T Consensus 221 c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a-~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~v 299 (343)
T KOG0286|consen 221 CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELA-VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNV 299 (343)
T ss_pred eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEe-eeccCcccCCceeEEEcccccEEEeeecCCceeE
Confidence 99987 5999999999999999999999776 9999999987654 1111122467999999999998777554 6
Q ss_pred CCcCCCCc
Q 004203 257 NDLDSSES 264 (768)
Q Consensus 257 wdl~sg~~ 264 (768)
||.-.++.
T Consensus 300 WDtlk~e~ 307 (343)
T KOG0286|consen 300 WDTLKGER 307 (343)
T ss_pred eeccccce
Confidence 66554433
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.86 E-value=2.5e-20 Score=189.76 Aligned_cols=238 Identities=15% Similarity=0.209 Sum_probs=184.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--EEEEEecCCCCcE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPW 153 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH~g~V~ 153 (768)
....|++.+.|.+|++|.+.++ +++-....|+.+...||++.||.+++- .||+||+++++ ++.+|.+|++.|.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence 4567889999999999999987 455566789999999999999988775 79999999876 5899999999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEee
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVL 232 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~ 232 (768)
.+.|.- +++.+++|+.||+++|||++...+++.+.+..+|+++..+|+...|+++.. +.|++||+....... ..+.
T Consensus 88 aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~--~liP 164 (311)
T KOG0315|consen 88 AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIP 164 (311)
T ss_pred EEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--ccCC
Confidence 999999 999999999999999999999999999999999999999999999999885 559999998875533 2344
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCccee------EeecCCccc---C-----------CCCeEEEecC
Q 004203 233 RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLT------LATSPGYWR---Y-----------PPPVICMAGA 287 (768)
Q Consensus 233 ~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~------L~t~~G~~~---~-----------p~~~V~l~d~ 287 (768)
.....|+++...|||+++++..+ +|++-....... +..+++|.- + ....+.+|+.
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 55689999999999998777654 887765443322 222333321 1 1233445553
Q ss_pred CCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203 288 HSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT 323 (768)
Q Consensus 288 ~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~ 323 (768)
..- ..+.....+..--.|.+.||.||++|+-...
T Consensus 245 ~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 245 DDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred CCc--eeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 222 2333333344445667999999999997433
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.86 E-value=3.8e-20 Score=192.54 Aligned_cols=196 Identities=16% Similarity=0.175 Sum_probs=171.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~ 151 (768)
...++..+++++.|..|.+|+.... .+++|++.|..+.|.+|++.|++++.|.+|+.||+++|++++.+++|..-
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~ 134 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF 134 (338)
T ss_pred ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccce
Confidence 3458999999999999999996533 68899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI 230 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~ 230 (768)
|+.+..+..+..++.+++.|++++|||+++.++++++.....++++.|..++..+.+|. |+.|++||++..+... .
T Consensus 135 vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~---~ 211 (338)
T KOG0265|consen 135 VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY---T 211 (338)
T ss_pred eeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE---E
Confidence 99988766566788899999999999999999999999899999999999999999998 6679999999888644 7
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCccee-EeecCCcc
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLT-LATSPGYW 275 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~-L~t~~G~~ 275 (768)
+.+|.+.|+.+..+|+|.++++-+. +||++......+ +....|+.
T Consensus 212 lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 212 LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 8899999999999999998887543 888886554433 55555543
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.85 E-value=1.7e-20 Score=201.18 Aligned_cols=219 Identities=18% Similarity=0.261 Sum_probs=177.7
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC---CCCCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC---PLSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~-~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
.+.++..++|+..+|.|+.|+..-. .+..|. ..|.+++|||+...|+++++|++|+|||....+....+.||+-.|
T Consensus 146 ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdV 225 (464)
T KOG0284|consen 146 WSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDV 225 (464)
T ss_pred EccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCc
Confidence 4467899999999999999999765 344555 999999999999999999999999999999999899999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI 230 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~ 230 (768)
.++.||| ...+++++++|..|++||.++++|+.++ .|...|..+.|+|++.+|++++.|. ++++|+++.++.. .
T Consensus 226 ksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~---~ 301 (464)
T KOG0284|consen 226 KSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF---T 301 (464)
T ss_pred ceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH---H
Confidence 9999999 8889999999999999999999999986 5888999999999999999999776 9999999766544 6
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEE
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS 310 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~ps 310 (768)
..+|++.|+++.|+|-..-|++++..+. .+.+|... ....+...+......+|..+
T Consensus 302 ~r~Hkkdv~~~~WhP~~~~lftsgg~Dg----------------------svvh~~v~--~~~p~~~i~~AHd~~iwsl~ 357 (464)
T KOG0284|consen 302 YRGHKKDVTSLTWHPLNESLFTSGGSDG----------------------SVVHWVVG--LEEPLGEIPPAHDGEIWSLA 357 (464)
T ss_pred hhcchhhheeeccccccccceeeccCCC----------------------ceEEEecc--ccccccCCCcccccceeeee
Confidence 7789999999999998887777664110 11111111 11223333344455678888
Q ss_pred EecCCCEEEEEec
Q 004203 311 FVRDDERISLQHT 323 (768)
Q Consensus 311 FSpDG~rIv~~~~ 323 (768)
|.|=|-.++-+-+
T Consensus 358 ~hPlGhil~tgsn 370 (464)
T KOG0284|consen 358 YHPLGHILATGSN 370 (464)
T ss_pred ccccceeEeecCC
Confidence 8888876665333
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.85 E-value=2.6e-20 Score=193.21 Aligned_cols=171 Identities=20% Similarity=0.302 Sum_probs=156.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s 154 (768)
+...|++++-|.+..+||++++ .|.+|.+.|.+++++| +++.|++|+-|+..++||++.+.+++.|.+|...|+.
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINs 234 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINS 234 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccce
Confidence 3678999999999999999988 4789999999999999 9999999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI 230 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~---~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~ 230 (768)
|+|.| +|.-|++|+.|++.++||++..+.+..+.+. .+|++++|+..|++|+.|.++. +.+||.-+++... .
T Consensus 235 v~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg---~ 310 (343)
T KOG0286|consen 235 VRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG---V 310 (343)
T ss_pred EEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE---E
Confidence 99999 9999999999999999999999998888755 4899999999999999988655 9999998887655 7
Q ss_pred eecCCCCeEEEEEccCCCeEEEEE
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
+.+|.+.|.++..+|||.-+++++
T Consensus 311 L~GHeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 311 LAGHENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred eeccCCeeEEEEECCCCcEEEecc
Confidence 889999999999999998554443
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=1.1e-19 Score=206.18 Aligned_cols=213 Identities=20% Similarity=0.270 Sum_probs=172.0
Q ss_pred cCCCEEEEEe-CCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203 79 DARRGLASWV-EAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (768)
Q Consensus 79 d~g~~LvSgs-~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~ 153 (768)
..|..|+-++ .-|.+-+|+.... +.++|...++++++||||+++++|+.|++|||||..+|-|..+|..|+..|+
T Consensus 317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt 396 (893)
T KOG0291|consen 317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT 396 (893)
T ss_pred ccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE
Confidence 3466666554 4578999998876 5679999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCe
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR--PIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPR 229 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~--~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~ 229 (768)
.+.|+. .++.+++.+.||+|+.||+......+++..+. ...+++-+|.|..++.|+.+. |++|++.+++...
T Consensus 397 ~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD--- 472 (893)
T KOG0291|consen 397 AVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD--- 472 (893)
T ss_pred EEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---
Confidence 999999 99999999999999999999999999987555 557888899999999998776 9999999999766
Q ss_pred EeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEE
Q 004203 230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRP 309 (768)
Q Consensus 230 ~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p 309 (768)
.+.+|.++|.+++|+|+|..|++++-++. |.+|+.-+.... .++-......+..
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkT-----------------------VRiW~if~s~~~---vEtl~i~sdvl~v 526 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKT-----------------------VRIWDIFSSSGT---VETLEIRSDVLAV 526 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccce-----------------------EEEEEeeccCce---eeeEeeccceeEE
Confidence 78899999999999999995554432222 223332111100 0111122345688
Q ss_pred EEecCCCEEEEE
Q 004203 310 SFVRDDERISLQ 321 (768)
Q Consensus 310 sFSpDG~rIv~~ 321 (768)
+|+|||+.|++.
T Consensus 527 sfrPdG~elaVa 538 (893)
T KOG0291|consen 527 SFRPDGKELAVA 538 (893)
T ss_pred EEcCCCCeEEEE
Confidence 999999999984
No 19
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.2e-20 Score=209.28 Aligned_cols=312 Identities=17% Similarity=0.180 Sum_probs=220.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s 154 (768)
..+-.+++.--.|.|++||.+-+ +|.+|.++|.+++|+|++.+|+||++|.+|+||+.++.+++.++.||-..|+.
T Consensus 19 P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt 98 (1202)
T KOG0292|consen 19 PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRT 98 (1202)
T ss_pred CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEE
Confidence 34566777778899999999866 57899999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccc-------
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET------- 225 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~------- 225 (768)
+.||+ .-.+|+|+|+|.+|+||+..+++++..+ +|...|.|..|+|....++++| |.+|++||+..-...
T Consensus 99 ~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~ 177 (1202)
T KOG0292|consen 99 VFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSL 177 (1202)
T ss_pred eeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCc
Confidence 99999 8999999999999999999999999985 6999999999999999999999 667999998532110
Q ss_pred -------------------cCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCC----cceeEeecCCcccCC----
Q 004203 226 -------------------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE----SSLTLATSPGYWRYP---- 278 (768)
Q Consensus 226 -------------------~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~----~~~~L~t~~G~~~~p---- 278 (768)
.....+.+|...|+.++|+|.-..|++++.+..++-|+ ....+.+-.||.+..
T Consensus 178 e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvl 257 (1202)
T KOG0292|consen 178 EDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVL 257 (1202)
T ss_pred hhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEE
Confidence 01234568899999999999999777766532222111 112233344444322
Q ss_pred -------------CCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEec----------
Q 004203 279 -------------PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQS---------- 335 (768)
Q Consensus 279 -------------~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~---------- 335 (768)
...+.+|+...........-..+ ++|..+-.|.....+++|++. -..+-..
T Consensus 258 fhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend---RFW~laahP~lNLfAAgHDsG---m~VFkleRErpa~~v~~ 331 (1202)
T KOG0292|consen 258 FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND---RFWILAAHPELNLFAAGHDSG---MIVFKLERERPAYAVNG 331 (1202)
T ss_pred ecCccceeEecCCCccEEEEecccccceeeeeccCC---eEEEEEecCCcceeeeecCCc---eEEEEEcccCceEEEcC
Confidence 24566677665555444432222 344444444333333333221 1111111
Q ss_pred ------------------------------------------cCCCceeeeecccCCCCCcCceeccCCCCCCCCCCCCC
Q 004203 336 ------------------------------------------LRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGT 373 (768)
Q Consensus 336 ------------------------------------------~~ss~~~rl~~~~~~t~~~~~~v~P~~~~~~~~~~~~~ 373 (768)
.+....+ |..++.+...++.+.-|.++.+.....+..
T Consensus 332 n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~v-lics~~~n~~y~L~~ipk~~~~~~~~~~~~ 410 (1202)
T KOG0292|consen 332 NGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAV-LICSNLDNGEYELVQIPKDSDGVSDGKDVK 410 (1202)
T ss_pred CEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeE-EEEeccCCCeEEEEEecCcccccCCchhhh
Confidence 1111222 222244556666666777777766656666
Q ss_pred CCCCcccccccCCccccccc-ccccc
Q 004203 374 GTDSFVSEIDGALPQAAIGA-VGTLD 398 (768)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~-~~~~~ 398 (768)
.+++-..-|.++++++++++ .++-+
T Consensus 411 k~tG~~a~fvarNrfavl~k~~~~v~ 436 (1202)
T KOG0292|consen 411 KGTGEGALFVARNRFAVLDKSNEQVV 436 (1202)
T ss_pred cCCCCceEEEEecceEEEEecCcceE
Confidence 66777778899999999999 44444
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.85 E-value=4e-20 Score=195.60 Aligned_cols=247 Identities=16% Similarity=0.193 Sum_probs=190.3
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203 73 IFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (768)
Q Consensus 73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (768)
..++.......+++++.|++|++||+.+++ +.||...|..+++|+--.||++++.|+.|+.||++..+.++.+.||
T Consensus 155 r~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGH 234 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGH 234 (460)
T ss_pred EEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccc
Confidence 344455678899999999999999999984 6799999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004203 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~ 226 (768)
-..|++++.+| .-+.|+++++|.++++||+++...+..+ +|..+|.++.+.|....+++++ |.+|++||++.++...
T Consensus 235 lS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 235 LSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI 313 (460)
T ss_pred cceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence 99999999999 8999999999999999999999988887 4999999999999888899999 4559999999988644
Q ss_pred CCeEeecCCCCeEEEEEccCCCeEEEEEe----eCCcCCCCcceeEeecC-----------Cccc--CCCCeEEEecCCC
Q 004203 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSESSLTLATSP-----------GYWR--YPPPVICMAGAHS 289 (768)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~s----vwdl~sg~~~~~L~t~~-----------G~~~--~p~~~V~l~d~~s 289 (768)
.+..|+..|++++.+|....+++++. -|++..+.....+..++ |+.. --...+.+|+-.+
T Consensus 314 ---tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 314 ---TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred ---eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence 67889999999999999875544443 33433332222211111 1110 1235677777665
Q ss_pred CCCCCcc-cccC----CCCCCceEEEEecCCCEEEEEec
Q 004203 290 SSHPGLA-EEVP----LITPPFLRPSFVRDDERISLQHT 323 (768)
Q Consensus 290 ~d~~~L~-~~~~----~~slpil~psFSpDG~rIv~~~~ 323 (768)
+-..... +... .....++..+|...|.+|+..-+
T Consensus 391 g~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea 429 (460)
T KOG0285|consen 391 GHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA 429 (460)
T ss_pred CcccccccccccCCccccccceeEEeecccCceEEeccC
Confidence 5442222 1111 12233567788888888886444
No 21
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1e-19 Score=198.85 Aligned_cols=218 Identities=22% Similarity=0.291 Sum_probs=181.7
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~ 151 (768)
.+.+|..++.|.+.|.|+++|..+. .+.+|+.+|..+.|+| |+..|++|++|+.+++||+.+......+.+|++.
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred eecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence 5678999999999999999996664 5889999999999999 6678889999999999999999887789999999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeE
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI 230 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~ 230 (768)
|++.+|+|.++.+++||+.||+|++||+++. ..+.++.|..+|.++.|-|.|..++++++..+++||+-++... ...
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql--l~~ 233 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL--LTS 233 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee--hhh
Confidence 9999999978889999999999999999987 7788899999999999999999999999999999999876652 234
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEE
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS 310 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~ps 310 (768)
...|.+.|+|+.+..++..|++++.+..++- -....+ ..+. ...++.|++..+
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV-------fd~t~~-----Kvv~---------------s~~~~~pvLsia 286 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKV-------FDTTNY-----KVVH---------------SWKYPGPVLSIA 286 (487)
T ss_pred hhcccceEEEEEeecCCceEeecccccceEE-------EEccce-----EEEE---------------eeecccceeeEE
Confidence 5559999999999999988887765333321 000111 1222 223567889999
Q ss_pred EecCCCEEEEEec
Q 004203 311 FVRDDERISLQHT 323 (768)
Q Consensus 311 FSpDG~rIv~~~~ 323 (768)
.|||++.++++-.
T Consensus 287 vs~dd~t~viGms 299 (487)
T KOG0310|consen 287 VSPDDQTVVIGMS 299 (487)
T ss_pred ecCCCceEEEecc
Confidence 9999999999644
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.84 E-value=1.6e-18 Score=174.08 Aligned_cols=182 Identities=24% Similarity=0.385 Sum_probs=157.1
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
...++..+++++.++.|++|+.... .+..|...+..+.|++++++|++++.|+.|++||+++++.+..+..|...+
T Consensus 17 ~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i 96 (289)
T cd00200 17 FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV 96 (289)
T ss_pred EcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcE
Confidence 3355788999999999999999865 467899999999999999999999999999999999988888999999899
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI 230 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~ 230 (768)
.++.|++ ++.++++++.|+.|++||+++++....+. |...+.+++|+|++.++++++ ++.|++||+++.+... .
T Consensus 97 ~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~ 172 (289)
T cd00200 97 SSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA---T 172 (289)
T ss_pred EEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce---e
Confidence 9999999 78888888889999999999888877765 778999999999999999998 6679999998766533 4
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS 262 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg 262 (768)
+..|...+.++.|+|+++.+++++. +|+++.+
T Consensus 173 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred EecCccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 5577789999999999988887764 5666543
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.84 E-value=2.2e-19 Score=195.45 Aligned_cols=175 Identities=18% Similarity=0.275 Sum_probs=150.9
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-------------
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS------------- 140 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~------------- 140 (768)
...++..|++++.||.+++|+.... .|..|+++|.++.|+.+|.+|++++.|+++.+||..+|+
T Consensus 243 Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l 322 (524)
T KOG0273|consen 243 WNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL 322 (524)
T ss_pred ecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCcc
Confidence 3456899999999999999999765 678999999999999999999999999999999985542
Q ss_pred ----------------------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCC
Q 004203 141 ----------------------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFY 191 (768)
Q Consensus 141 ----------------------------~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~ 191 (768)
++.++.||.+.|.++.|+| .+.+|++++.|++++||......++..+ .|.
T Consensus 323 DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs 401 (524)
T KOG0273|consen 323 DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS 401 (524)
T ss_pred ceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhc
Confidence 2345568999999999999 9999999999999999999888887775 588
Q ss_pred CCeEEEEEcCCCC---------EEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 192 RPIASIAFHASGE---------LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 192 ~~V~svafSPDG~---------~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
..|..+.|+|+|. .|++++ +..|++||+..+.... .+..|..+|++|+|+|+|++++++..
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~---~f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH---TLMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE---eeccCCCceEEEEecCCCcEEEecCC
Confidence 8999999999763 566666 5669999999987644 67789999999999999998876653
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=2.9e-19 Score=203.33 Aligned_cols=175 Identities=25% Similarity=0.366 Sum_probs=150.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~ 151 (768)
...++..+++++.|++|++||.... .+++|...|++++|+|+|+++++|+.|++|+|||+++++++..+.+|.+.
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~ 290 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG 290 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc
Confidence 4457789999999999999999432 58899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCc--EEEEe-cCCC--CeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIGSR-DFYR--PIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~--~i~~l-~h~~--~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~ 225 (768)
|..++|++ ++.+|++++.|+.|+|||+.++. +...+ .+.. .++++.|+|++++|++++.|+ +++||+......
T Consensus 291 is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 291 ISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred eEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 99999999 99999999999999999999999 44544 2333 589999999999999999775 999999988764
Q ss_pred cCCeEeecCCC---CeEEEEEccCCCeEEEEEe
Q 004203 226 SSPRIVLRTRR---SLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 226 ~~~~~l~~h~~---~V~sVaFSPDG~~LlaS~s 255 (768)
. ....|.. .+.+..+++.++++++++.
T Consensus 370 ~---~~~~~~~~~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 370 G---TYTGHSNLVRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred e---eecccCCcceeEecccccCCCCeEEEEeC
Confidence 4 4455544 4555666888887777665
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=184.94 Aligned_cols=183 Identities=20% Similarity=0.282 Sum_probs=150.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g 150 (768)
...+++.|+.++ ...|++||+.+. ++.+|++.|+++.|..||+++++|++||++||||++...+.+.|+ |..
T Consensus 48 iTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~s 125 (311)
T KOG0315|consen 48 ITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNS 125 (311)
T ss_pred EcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCC
Confidence 334566666554 458999999876 478999999999999999999999999999999999977777775 679
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE----------------------------------------------
Q 004203 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---------------------------------------------- 184 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---------------------------------------------- 184 (768)
+|+++..+| +...|+++..+|.|++||+....+
T Consensus 126 pVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 126 PVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred CcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc
Confidence 999999999 888999999999999999975422
Q ss_pred ---EEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe----
Q 004203 185 ---IGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE---- 255 (768)
Q Consensus 185 ---i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s---- 255 (768)
+..+ .|.+.+..+.++||+++|++++.++ ++||+.++.-. ....+.+|..+++..+||-||+||+++++
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k--le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~ 282 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK--LELVLTGHQRWVWDCAFSADGEYLVTASSDHTA 282 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee--eEEEeecCCceEEeeeeccCccEEEecCCCCce
Confidence 0111 3667788999999999999999766 99999988721 23467789999999999999999998876
Q ss_pred -eCCcCCCCc
Q 004203 256 -VNDLDSSES 264 (768)
Q Consensus 256 -vwdl~sg~~ 264 (768)
.|++..++.
T Consensus 283 rlW~~~~~k~ 292 (311)
T KOG0315|consen 283 RLWDLSAGKE 292 (311)
T ss_pred eecccccCce
Confidence 677765543
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=4.1e-19 Score=201.42 Aligned_cols=233 Identities=18% Similarity=0.244 Sum_probs=179.5
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g 150 (768)
.+-+.+++.|++|++|++|++||...+ +|..|+..|+++.|+.+|+.+++.+-||+|+.||+..++..++|.....
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 334568999999999999999999985 7999999999999999999999999999999999999999999976543
Q ss_pred -CcEEEEEccCCCCEEEEEeCCC-eEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc
Q 004203 151 -TPWVVRFHPLNPTIIASGSLDH-EVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS 226 (768)
Q Consensus 151 -~V~sVafSP~dg~lLaSgS~Dg-tVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~ 226 (768)
...+++..| .|.++..|+.|. .|++|++++|+.+..+ +|+++|.+++|+|+|..|++++.|+ |++||+-......
T Consensus 436 ~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 436 IQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred eeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence 466788888 899999999887 7999999999999886 6999999999999999999999655 9999996653322
Q ss_pred CCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCC
Q 004203 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL 301 (768)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~ 301 (768)
....+...+..++|+|||+.++++.. +||.... ....+.+|........ ...+ ........
T Consensus 515 ---Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~---~q~~~IdgrkD~~~gR-------~~~D-~~ta~~sa 580 (893)
T KOG0291|consen 515 ---ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA---VQVGSIDGRKDLSGGR-------KETD-RITAENSA 580 (893)
T ss_pred ---eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc---eeeccccchhhccccc-------cccc-eeehhhcc
Confidence 34567789999999999999988765 4555422 2333333432211100 0001 11111112
Q ss_pred CCCCceEEEEecCCCEEEEEe
Q 004203 302 ITPPFLRPSFVRDDERISLQH 322 (768)
Q Consensus 302 ~slpil~psFSpDG~rIv~~~ 322 (768)
..-++...+||+||+.|+++.
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGG 601 (893)
T ss_pred cCCceEEEEEcCCCCEEEecC
Confidence 223445889999999999843
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=8.5e-20 Score=193.69 Aligned_cols=188 Identities=27% Similarity=0.383 Sum_probs=166.7
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 78 RDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 78 ~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
...++.+++++.|-++++||.++. .+.+|...|.++.|-|.|.+|++++.|.+|+.|++.+|.++++|.+|...|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewv 238 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWV 238 (406)
T ss_pred ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhE
Confidence 346799999999999999999874 578999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCC---------------CCEEEEEECCe-EE
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS---------------GELLAVASGHK-LY 215 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPD---------------G~~LatgSdd~-I~ 215 (768)
+.++.+. ||.++++++.|.+|++|-+.++++...+ .|+.+|.+++|-|. ++++.+++.|+ |+
T Consensus 239 r~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 239 RMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred EEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence 9999999 9999999999999999999999887765 58889999999874 24888888555 99
Q ss_pred EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004203 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA 269 (768)
Q Consensus 216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~ 269 (768)
+||+.++.. .+.+.+|.++|+.++|+|.|+||++.+. +||+...+....+.
T Consensus 318 ~wdv~tg~c---L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 318 IWDVSTGMC---LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred EEeccCCeE---EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 999999986 4488999999999999999999998776 77777655544444
No 28
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.9e-19 Score=183.89 Aligned_cols=187 Identities=18% Similarity=0.264 Sum_probs=159.1
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (768)
.+.......+++++-||++++||.... .+++|+..|.++.|++ +++.++++|.|++||+||...++.+.+|.||
T Consensus 67 ~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 67 AWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred eecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence 344456677889999999999996543 4789999999999999 7788889999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCeEEEEEcCCC-CEEEEEECCe-EEEEEcCCCccc
Q 004203 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMREET 225 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s-g~~i~~l~h~~~V~svafSPDG-~~LatgSdd~-I~IWDl~t~~~~ 225 (768)
...|+...|+|...++++++|.|++++|||++. |+.+....|...+.++.|+.-. ..|++++-|+ |+.||+++-+.
T Consensus 147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~- 225 (311)
T KOG0277|consen 147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT- 225 (311)
T ss_pred ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-
Confidence 999999999999999999999999999999986 5666655688899999999844 5777777454 99999998775
Q ss_pred cCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCC
Q 004203 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSE 263 (768)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~ 263 (768)
..+.+.+|.-.|+.|.|||...-++++++ +|+....+
T Consensus 226 -pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 226 -PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred -cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 45677889999999999999988888765 67665433
No 29
>PTZ00421 coronin; Provisional
Probab=99.81 E-value=1.4e-17 Score=190.94 Aligned_cols=173 Identities=14% Similarity=0.211 Sum_probs=142.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l~g 147 (768)
++..|++++.|++|++||+... .+.+|...|.+++|+|++ ++|++++.|++|+|||+++++.+..+.+
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 5678999999999999998643 367899999999999975 7999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCC-CeEEEEEcCCCCEEEEEE-----CCeEEEEEcC
Q 004203 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYR-PIASIAFHASGELLAVAS-----GHKLYIWRYN 220 (768)
Q Consensus 148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~-~V~svafSPDG~~LatgS-----dd~I~IWDl~ 220 (768)
|...|.+++|+| ++.+|++++.|++|+|||+++++.+..+. |.+ .+..+.|.+++..|++++ ++.|++||++
T Consensus 167 h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 167 HSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 999999999999 99999999999999999999998877764 544 345788999988777654 3459999998
Q ss_pred CCccccCCeEe-ecCCCCeEEEEEccCCCeEEEEEe
Q 004203 221 MREETSSPRIV-LRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 221 t~~~~~~~~~l-~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+..... ... ......+....|+++++.+++++.
T Consensus 246 ~~~~p~--~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 246 KMASPY--STVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred CCCCce--eEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 765321 111 123445667789999998877663
No 30
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=198.92 Aligned_cols=231 Identities=18% Similarity=0.220 Sum_probs=175.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCC--------------------------------C-----------------------
Q 004203 77 GRDARRGLASWVEAESLHHLRPKY--------------------------------C----------------------- 101 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t--------------------------------~----------------------- 101 (768)
.+.+|++|+++++|+.|++|.+.. .
T Consensus 275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~ 354 (712)
T KOG0283|consen 275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA 354 (712)
T ss_pred eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence 456899999999999999998754 0
Q ss_pred ---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC
Q 004203 102 ---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172 (768)
Q Consensus 102 ---------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg 172 (768)
.+.||...|.++.||.+ ++|++++.|.+||+|++...+|+..|. |..-|+||+|+|.|.++|++|+.|+
T Consensus 355 f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~ 432 (712)
T KOG0283|consen 355 FVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDG 432 (712)
T ss_pred ccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeeccccc
Confidence 14589999999999964 688999999999999999999999996 9999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecC------CCCeEEEEEcc
Q 004203 173 EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRT------RRSLRAVHFHP 245 (768)
Q Consensus 173 tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h------~~~V~sVaFSP 245 (768)
.||||++...+.....+...-|++++|.|||+..++|+ +|.+++|+....+.... ..+..+ ...|+.++|.|
T Consensus 433 KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~-~~I~~~~~Kk~~~~rITG~Q~~p 511 (712)
T KOG0283|consen 433 KVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD-FHIRLHNKKKKQGKRITGLQFFP 511 (712)
T ss_pred ceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe-eeEeeccCccccCceeeeeEecC
Confidence 99999999998888888889999999999999999999 56699999887665331 111111 23799999998
Q ss_pred CCC-eEEEEEeeCCcCCCC--cceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEe
Q 004203 246 HAA-PLLLTAEVNDLDSSE--SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH 322 (768)
Q Consensus 246 DG~-~LlaS~svwdl~sg~--~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~ 322 (768)
... .+++++++-.++--+ ....+..+.|+.. .. .....+|+.||+.|+.+.
T Consensus 512 ~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-------------------------~~-SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 512 GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-------------------------TS-SQISASFSSDGKHIVSAS 565 (712)
T ss_pred CCCCeEEEecCCCceEEEeccchhhhhhhccccc-------------------------CC-cceeeeEccCCCEEEEee
Confidence 654 366665543333111 1222222233211 11 122578999999999976
Q ss_pred cCCCCCcceEEeccCCCc
Q 004203 323 TEHDSGATRTQQSLRSSS 340 (768)
Q Consensus 323 ~d~~~Gs~~~~~~~~ss~ 340 (768)
.|. -.+++..++..
T Consensus 566 eDs----~VYiW~~~~~~ 579 (712)
T KOG0283|consen 566 EDS----WVYIWKNDSFN 579 (712)
T ss_pred cCc----eEEEEeCCCCc
Confidence 433 34666665444
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.6e-18 Score=184.06 Aligned_cols=175 Identities=17% Similarity=0.271 Sum_probs=158.1
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
....+..|+|++.|.+|+.|+..++ ++.+|.+-|..++.+.||.+++++++|.+|++|-+.++++...+++|..+|
T Consensus 201 f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 201 FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV 280 (406)
T ss_pred EEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence 3445799999999999999999987 799999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccC--------------CCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEE
Q 004203 153 WVVRFHPL--------------NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYI 216 (768)
Q Consensus 153 ~sVafSP~--------------dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~I 216 (768)
.+++|.|. .+.++.++++|++|++||+.++.++.++ +|...|..++|+|.|++|+++.||+ +++
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV 360 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence 99999872 2469999999999999999999999886 5999999999999999999999887 999
Q ss_pred EEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
||+++.++.. .+..|..-|+++.|+.+-.++++++
T Consensus 361 wdl~~~~cmk---~~~ah~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 361 WDLKNLQCMK---TLEAHEHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred EEeccceeee---ccCCCcceeEEEecCCCCceEEecc
Confidence 9999998754 5567889999999999988655443
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.80 E-value=3.5e-17 Score=198.05 Aligned_cols=178 Identities=17% Similarity=0.263 Sum_probs=148.9
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC----C-------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEE
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYC----P-------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL 142 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~-------L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l 142 (768)
.+...++..+++++.|+.|++|+.... . ...+...|.+++|++ ++.+|++++.|++|++||+.+++.+
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~ 568 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV 568 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 344457889999999999999997531 0 012356789999998 5889999999999999999999999
Q ss_pred EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEc-CCCCEEEEEECC-eEEEEEcC
Q 004203 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH-ASGELLAVASGH-KLYIWRYN 220 (768)
Q Consensus 143 ~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafS-PDG~~LatgSdd-~I~IWDl~ 220 (768)
..+.+|.+.|++++|+|.++.+|++|+.|++|++||+++++++..+.+...+.++.|+ ++|.+|++|+.+ .|++||++
T Consensus 569 ~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 9999999999999999767899999999999999999999988888777889999995 578999999854 59999998
Q ss_pred CCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 221 t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+... ....+.+|...|.++.|. ++.++++++.
T Consensus 649 ~~~~--~~~~~~~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 649 NPKL--PLCTMIGHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred CCCc--cceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence 7653 123566899999999997 6777776654
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.79 E-value=3.2e-19 Score=191.44 Aligned_cols=190 Identities=17% Similarity=0.215 Sum_probs=160.8
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-CCcE
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPW 153 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-g~V~ 153 (768)
..+++|++++..|.+.+|+.... .++.|...|.++.|+++|.++++|..+|.||+|+..-. .++.++.|. ..|+
T Consensus 106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIR 184 (464)
T KOG0284|consen 106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIR 184 (464)
T ss_pred CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhh
Confidence 57899999999999999999765 36799999999999999999999999999999997643 455566555 8999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEe
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV 231 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l 231 (768)
+++|+| +...|++++.|++|+|||....+..+.+ +|.-.|.+++|+|...+|+++++|. |++||.+++.++. .+
T Consensus 185 dlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~---tl 260 (464)
T KOG0284|consen 185 DLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA---TL 260 (464)
T ss_pred eeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh---hh
Confidence 999999 8888999999999999999987765554 6888999999999999999999777 9999999999765 78
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc
Q 004203 232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR 276 (768)
Q Consensus 232 ~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~ 276 (768)
..|+..|..+.|+|++.+|++.+. +.|++ ....+.+..+|.+
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR---~mkEl~~~r~Hkk 307 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR---TMKELFTYRGHKK 307 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccCCceEEEEehh---HhHHHHHhhcchh
Confidence 889999999999999998888776 33444 3344555556543
No 34
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.79 E-value=6.7e-19 Score=192.30 Aligned_cols=217 Identities=16% Similarity=0.216 Sum_probs=166.8
Q ss_pred CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC-CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 004203 102 PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (768)
Q Consensus 102 ~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~t-g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl 179 (768)
.+.+|+..|+++.|.| .+.+|++++.|+.|+||++-. ++++++|.||..+|..++|+. ++..+++++.|+.|++||+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeecc
Confidence 5679999999999999 999999999999999999876 899999999999999999999 9999999999999999999
Q ss_pred CCCcEEEEecCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe--
Q 004203 180 STAECIGSRDFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-- 255 (768)
Q Consensus 180 ~sg~~i~~l~h~~~V~svafSPDG-~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-- 255 (768)
++|+++..+.....++++.|+||+ +.+++|+ +++|+.||+++++.++ ....|-..|..+.|-++|+++++++.
T Consensus 288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCc
Confidence 999999999999999999999999 5555555 5669999999999766 56778899999999999999999887
Q ss_pred ---eCCcCCCCcceeEeecCCcc-----cCC----------CCeEEEecCCCCCCCCcccccCCCCCCce--EEEEecCC
Q 004203 256 ---VNDLDSSESSLTLATSPGYW-----RYP----------PPVICMAGAHSSSHPGLAEEVPLITPPFL--RPSFVRDD 315 (768)
Q Consensus 256 ---vwdl~sg~~~~~L~t~~G~~-----~~p----------~~~V~l~d~~s~d~~~L~~~~~~~slpil--~psFSpDG 315 (768)
+|+.+..-.........-|. .+| .+.+.+..+...........-.+...+.+ .+.|||||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 55444221111111111110 011 12222222333333333333334444555 68999999
Q ss_pred CEEEEEe
Q 004203 316 ERISLQH 322 (768)
Q Consensus 316 ~rIv~~~ 322 (768)
+.|+.+-
T Consensus 445 ~~l~SGd 451 (503)
T KOG0282|consen 445 RTLCSGD 451 (503)
T ss_pred CeEEeec
Confidence 9999743
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=171.70 Aligned_cols=174 Identities=19% Similarity=0.258 Sum_probs=147.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-C-------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--CeEEEEEecCCC
Q 004203 81 RRGLASWVEAESLHHLRPKYC-P-------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--GSCLKVLHGHRR 150 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~-~-------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t--g~~l~~l~gH~g 150 (768)
+..|++++.|+.|++|+.... . -.+|++.|.+++|+|.|++|+++|.|.++.||.-.. .+++.++.||..
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN 106 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence 557999999999999999832 1 237999999999999999999999999999997654 478899999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE---EEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccc
Q 004203 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI---GSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET 225 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i---~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~ 225 (768)
.|.+++|++ +|.+||++++|+.|.||.+..+... ..+ .|...|..+.|+|...+|++++ |++|++|+-.....-
T Consensus 107 EVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW 185 (312)
T KOG0645|consen 107 EVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDW 185 (312)
T ss_pred ceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCe
Confidence 999999999 9999999999999999999865543 333 4888999999999999999999 556999987643322
Q ss_pred cCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.....+.+|...|.++.|++.|..++++..
T Consensus 186 ~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd 215 (312)
T KOG0645|consen 186 ECVQTLDGHENTVWSLAFDNIGSRLVSCSD 215 (312)
T ss_pred eEEEEecCccceEEEEEecCCCceEEEecC
Confidence 223467788889999999999988887765
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.7e-18 Score=188.44 Aligned_cols=176 Identities=16% Similarity=0.304 Sum_probs=159.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCcEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWV 154 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~g~V~s 154 (768)
.+..+++|++|..|++++..+. +|..|.+-|.+++.+|...+++++|+|.+||+||.+.+ .+.++|.||..-|.+
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 4678999999999999999987 58899999999999999999999999999999998764 688999999999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCC--CEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASG--ELLAVASGHK-LYIWRYNMREETSSPRI 230 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG--~~LatgSdd~-I~IWDl~t~~~~~~~~~ 230 (768)
++|+|.|.+.++|++.|++|++|.+.+..+..++ +|...|++++|-+-| .+|++|+||. |+|||+++..+++ .
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~---T 222 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ---T 222 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH---H
Confidence 9999999999999999999999999998888776 599999999998755 5999999877 9999999999876 7
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAEVND 258 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~svwd 258 (768)
+.+|...|..+.|+|.-..+++++++..
T Consensus 223 LeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 223 LEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred hhcccccceEEEecCCCcEEEEecCCcc
Confidence 8899999999999999996666665333
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.78 E-value=6.7e-17 Score=195.56 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=145.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s 154 (768)
.+..|++++.|+.|++||..++ .+.+|.+.|++++|+| ++.+|++|+.|++|++||+++++.+..+..+ ..|.+
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 4678999999999999999876 4779999999999997 8899999999999999999999998888765 57899
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcc---ccCC
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE---TSSP 228 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~-l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~---~~~~ 228 (768)
+.|++.++.+|++|+.|+.|++||+++++ .+.. ..|...|.++.|. ++.+|++++. +.|++||++.... ....
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l 701 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL 701 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence 99976589999999999999999998865 3333 4688899999997 6788888885 4599999975421 1122
Q ss_pred eEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 229 RIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
..+.+|...+..+.|+|++.+|++++.
T Consensus 702 ~~~~gh~~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 356678889999999999998777765
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.78 E-value=2.9e-17 Score=164.98 Aligned_cols=172 Identities=27% Similarity=0.421 Sum_probs=150.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
.+..++++..++.|.+||..+. .+..|...|.+++|+|+++++++++.|+.|++||+++++.+..+..|...+.++
T Consensus 104 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 183 (289)
T cd00200 104 DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183 (289)
T ss_pred CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceE
Confidence 4566777777999999999854 466799999999999999999998889999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeec
Q 004203 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR 233 (768)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~ 233 (768)
.|+| +++.+++++.|+.|++||+++++.+..+ .+...+.+++|+|++.++++++ ++.|++||+.+.+... .+..
T Consensus 184 ~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~---~~~~ 259 (289)
T cd00200 184 AFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ---TLSG 259 (289)
T ss_pred EECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE---Eccc
Confidence 9999 8888888888999999999998888887 6888999999999998998888 6779999998766533 4457
Q ss_pred CCCCeEEEEEccCCCeEEEEEe
Q 004203 234 TRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 234 h~~~V~sVaFSPDG~~LlaS~s 255 (768)
|...|.++.|+|+++++++++.
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred cCCcEEEEEECCCCCEEEEecC
Confidence 8889999999999997777654
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.78 E-value=1.2e-17 Score=177.01 Aligned_cols=187 Identities=18% Similarity=0.231 Sum_probs=164.7
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
.++..-+|+++++|+.|+-||+++.+ +.||-..|.|++..|.-+.|++|+.|.+++|||+++...+..+.||+.+|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V 280 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV 280 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc
Confidence 34567889999999999999999874 56999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEe
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIV 231 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l 231 (768)
..+.+.| -...+++|+.|++|++||++.|+...++ .|...+.+++.+|....+++++.|.|+-|++..+.... .+
T Consensus 281 ~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~---nl 356 (460)
T KOG0285|consen 281 ASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQ---NL 356 (460)
T ss_pred eeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhh---cc
Confidence 9999999 6667899999999999999999887775 57789999999999999999999999999999988755 47
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203 232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL 268 (768)
Q Consensus 232 ~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L 268 (768)
.+|...|+.++...||- +++++. .||.+++..-+..
T Consensus 357 sgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 357 SGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred ccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccc
Confidence 88999999999999986 444443 7788776555544
No 40
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.78 E-value=5.9e-18 Score=185.75 Aligned_cols=218 Identities=18% Similarity=0.182 Sum_probs=162.4
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCC--------CC-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE---
Q 004203 76 AGRDARRGLASWVEAESLHHLRPKYC--------PL-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--- 143 (768)
Q Consensus 76 a~~d~g~~LvSgs~DgsIrlWd~~t~--------~L-~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--- 143 (768)
+....+.++++|+-|-.|++||.... +| ......|.++.|++.|..|++.+.....+|+|.+..+...
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~K 253 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSK 253 (641)
T ss_pred eecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeec
Confidence 34567899999999999999999743 22 3456689999999999999999999999999976544332
Q ss_pred ---------EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE-EEec------CCCCeEEEEEcCCCCEEE
Q 004203 144 ---------VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-GSRD------FYRPIASIAFHASGELLA 207 (768)
Q Consensus 144 ---------~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i-~~l~------h~~~V~svafSPDG~~La 207 (768)
.-+||...+++.+|+|+....+++++.|+++||||+...+.+ ..+. ..-+++.++|++||++||
T Consensus 254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA 333 (641)
T KOG0772|consen 254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA 333 (641)
T ss_pred cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence 236899999999999988899999999999999999875433 2332 233788999999999999
Q ss_pred EEECC-eEEEEEcCCCccccCCeEeecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCC
Q 004203 208 VASGH-KLYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPP 279 (768)
Q Consensus 208 tgSdd-~I~IWDl~t~~~~~~~~~l~~h~~--~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~ 279 (768)
+|+.+ .|++||...............|.. .|++|.||+||++|++-+. +||++.... .|....|.
T Consensus 334 agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk--pL~~~tgL----- 406 (641)
T KOG0772|consen 334 AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK--PLNVRTGL----- 406 (641)
T ss_pred hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc--chhhhcCC-----
Confidence 99954 599999876654322223344655 8999999999999887654 666653211 11111111
Q ss_pred CeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203 280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ 321 (768)
Q Consensus 280 ~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~ 321 (768)
....+...++||||.+.|+.+
T Consensus 407 ---------------------~t~~~~tdc~FSPd~kli~TG 427 (641)
T KOG0772|consen 407 ---------------------PTPFPGTDCCFSPDDKLILTG 427 (641)
T ss_pred ---------------------CccCCCCccccCCCceEEEec
Confidence 112344478999999988864
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=6e-18 Score=192.00 Aligned_cols=173 Identities=21% Similarity=0.299 Sum_probs=157.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203 79 DARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~-------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l 145 (768)
..-..+++++.|.++++|++... ....|...|++++++|+.++|++||.|++.+||+++......++
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL 501 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL 501 (775)
T ss_pred cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe
Confidence 34577999999999999998752 12379999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004203 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE 223 (768)
Q Consensus 146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~ 223 (768)
.||+..|++|.|+| ..++++++|.|++|+||.+.+..|++++. |...|..+.|-.+|+.|++++.++ |++|++.+.+
T Consensus 502 sGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred eCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 99999999999999 88999999999999999999999999986 999999999999999999988655 9999999999
Q ss_pred cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+.. .+..|++.|++++-+|....+++++.
T Consensus 581 C~~---tlD~H~DrvWaL~~~~~~~~~~tgg~ 609 (775)
T KOG0319|consen 581 CEM---TLDAHNDRVWALSVSPLLDMFVTGGG 609 (775)
T ss_pred hhh---hhhhccceeEEEeecCccceeEecCC
Confidence 765 78899999999999999996666554
No 42
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.77 E-value=8.8e-18 Score=183.05 Aligned_cols=172 Identities=20% Similarity=0.295 Sum_probs=152.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
+...+++.+.|+.|+++.+... ++.+|.+.|.++.|+|.|.+|+++|.|++++||+.....+...|.+|...|+.+
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~ 407 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTI 407 (524)
T ss_pred cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeE
Confidence 4567888899999999988644 688999999999999999999999999999999999999999999999999999
Q ss_pred EEccC--------CCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccc
Q 004203 156 RFHPL--------NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREET 225 (768)
Q Consensus 156 afSP~--------dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~ 225 (768)
.|+|. .+..+++++.|++|++||+..+.++..+ +|..+|++++|+|+|++|++|+-+ .|++|+.++++..
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV 487 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee
Confidence 99984 2458999999999999999999999997 899999999999999999999955 5999999998753
Q ss_pred cCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
. .......|..++|+-+|.+|.+..+
T Consensus 488 ~----s~~~~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 488 K----SYQGTGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred E----eecCCCeEEEEEEcCCCCEEEEEec
Confidence 3 4455677999999999998776654
No 43
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.77 E-value=2.8e-18 Score=187.52 Aligned_cols=144 Identities=23% Similarity=0.328 Sum_probs=131.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s 154 (768)
.+..|++++.|+.|++|++... ++.+|..+|.+++|+.+|..|++++.|+.|++||++||+++..|. -...+++
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~c 304 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTC 304 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCcee
Confidence 5778899999999999999762 689999999999999999999999999999999999999999886 3567889
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE 224 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~ 224 (768)
+.|+|++.+.+++|..|+.|+.||+++++.++.+. |-+.|..+.|-++|+.+++.++++ ++||+.+....
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ 376 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP 376 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence 99999666999999999999999999999888875 678999999999999999999877 99999887643
No 44
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.4e-16 Score=167.19 Aligned_cols=177 Identities=20% Similarity=0.326 Sum_probs=149.4
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEeCCCCeEEEEEecC
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVLHGH 148 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~l~gH 148 (768)
....+++..+++.++|.++++||...+ ++..++-.|..+.|......++.++. |.+||..++.+.+.++.|.||
T Consensus 20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH 99 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGH 99 (311)
T ss_pred EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCC
Confidence 345578999999999999999999987 35567778999999987777777766 999999999999999999999
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccC
Q 004203 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSS 227 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~ 227 (768)
...|..++.+| .++.++|++.|++|++||++..+++..+..... ..++|+|+|-++|++.+. .|++||++.-...
T Consensus 100 ~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg-- 175 (311)
T KOG1446|consen 100 KKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDKG-- 175 (311)
T ss_pred CceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCCC--
Confidence 99999999999 779999999999999999999998887764443 457899999999999976 5999999986542
Q ss_pred CeEee----cCCCCeEEEEEccCCCeEEEEEe
Q 004203 228 PRIVL----RTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 228 ~~~l~----~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
|+... ......+.+.|||||++++.+..
T Consensus 176 PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 176 PFTTFSITDNDEAEWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred CceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence 22222 23567899999999999998875
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.9e-17 Score=166.53 Aligned_cols=153 Identities=28% Similarity=0.507 Sum_probs=130.7
Q ss_pred CCCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCC---CeEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCeEE
Q 004203 101 CPLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQT---GSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVR 175 (768)
Q Consensus 101 ~~L~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~t---g~~l~~l-~gH~g~V~sVafSP~dg~lLaSgS~DgtVr 175 (768)
.++++|++.|..++|+|- |..||+|+.|+.|++|+... ..+...+ .+|+..|++++|+| .+++|+++|.|.++.
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVV 86 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEE
Confidence 357899999999999996 88999999999999999885 3444444 47999999999999 999999999999999
Q ss_pred EEECCCC--cEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203 176 LWNASTA--ECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (768)
Q Consensus 176 LWDl~sg--~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Ll 251 (768)
||.-..+ +++.++ +|+..|.+++|+++|.+||+++.|+ |.||.+....+......+..|...|..+.|||... |+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL 165 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LL 165 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-ee
Confidence 9987765 455555 5999999999999999999999777 99999987666555567788999999999999888 44
Q ss_pred EEEe
Q 004203 252 LTAE 255 (768)
Q Consensus 252 aS~s 255 (768)
++++
T Consensus 166 ~S~S 169 (312)
T KOG0645|consen 166 FSCS 169 (312)
T ss_pred EEec
Confidence 5544
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.9e-17 Score=167.87 Aligned_cols=191 Identities=22% Similarity=0.247 Sum_probs=157.7
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
..-++.+.++++.|++|++|+...+ ++.+|...|.+++.+.|...|++|+.|..|.+||+++|+.++.|.+|.+.|
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqV 104 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQV 104 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccccee
Confidence 3457889999999999999999877 578999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCC--cEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCC
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP 228 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg--~~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~ 228 (768)
+.++|+. +...+++|+.|.++++||-++. ++++.+. ....|.++..+ +..|+.|+ ||+++.||++.+....
T Consensus 105 NtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s-- 179 (307)
T KOG0316|consen 105 NTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS-- 179 (307)
T ss_pred eEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh--
Confidence 9999999 9999999999999999999874 5677665 56788888775 55677777 6779999999997633
Q ss_pred eEeecCCCCeEEEEEccCCCeEEEEEeeCCcC--CCCcceeEeecCCcc
Q 004203 229 RIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD--SSESSLTLATSPGYW 275 (768)
Q Consensus 229 ~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~--sg~~~~~L~t~~G~~ 275 (768)
.. -..+|+++.|++||+..++++..-.++ ..+....|..-.||.
T Consensus 180 -Dy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk 225 (307)
T KOG0316|consen 180 -DY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK 225 (307)
T ss_pred -hh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc
Confidence 22 345999999999999888877633333 122234444455554
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.76 E-value=1.3e-15 Score=167.91 Aligned_cols=192 Identities=17% Similarity=0.202 Sum_probs=154.3
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEeCCCCeEEEE
Q 004203 73 IFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKV 144 (768)
Q Consensus 73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~ 144 (768)
...-.+..+.++++|...|+|++||.... +++.-.++|.+++|+.|+++|+..++ +.-.+++-.++|..+..
T Consensus 63 tVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGe 142 (603)
T KOG0318|consen 63 TVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGE 142 (603)
T ss_pred EEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccce
Confidence 33335567889999999999999998763 46677899999999999999987765 33344444446788899
Q ss_pred EecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC
Q 004203 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR 222 (768)
Q Consensus 145 l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~ 222 (768)
+.||...|+++.|-|...-.+++++.|++|-+|+-.--+...++ .|..-|+++.|+|||+++++.+ |++|.+||-.++
T Consensus 143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence 99999999999999966668999999999999986555555554 4778999999999999999887 566999999999
Q ss_pred ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCc
Q 004203 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSES 264 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~ 264 (768)
+.......-..|++.|.+++|+||+..+++.+. +||+.....
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 876622223479999999999999999988654 888875543
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.75 E-value=4.6e-17 Score=173.85 Aligned_cols=181 Identities=19% Similarity=0.266 Sum_probs=160.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC---------------
Q 004203 81 RRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--------------- 137 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~~--------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~--------------- 137 (768)
...+++++.|+++++|..+.+. -.||++.|-++...+||..+++|+.|.+|+||+..
T Consensus 159 ~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 159 SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred cceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh
Confidence 4569999999999999988652 24999999999999999999999999999999931
Q ss_pred ----------CCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEE
Q 004203 138 ----------TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA 207 (768)
Q Consensus 138 ----------tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~La 207 (768)
++.++.++.||+++|.+|.|++ ...+++++.|.+|+.||+.++.++.++.....+++++.+|..++|+
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLA 316 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceee
Confidence 1234667889999999999987 7789999999999999999999999998899999999999999999
Q ss_pred EEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCC
Q 004203 208 VASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSE 263 (768)
Q Consensus 208 tgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~ 263 (768)
+|+.+. |++||.+++........+.+|...|.++.|+|...+++++++ +||+|+..
T Consensus 317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 999776 999999998766556778999999999999999999988876 88888644
No 49
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.75 E-value=3.8e-17 Score=192.22 Aligned_cols=179 Identities=21% Similarity=0.279 Sum_probs=149.3
Q ss_pred EEecCCCEEEEEe--CCCeEEEEeCCC----------------CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 004203 76 AGRDARRGLASWV--EAESLHHLRPKY----------------CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ 137 (768)
Q Consensus 76 a~~d~g~~LvSgs--~DgsIrlWd~~t----------------~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~ 137 (768)
....++.++++|+ .|+.+++|+.+. ++...|.+.|+|+.|+|||++||+|++|+.|.||+..
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERA 99 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeec
Confidence 3456788888888 888889998762 1356799999999999999999999999999999876
Q ss_pred C------------------CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEE
Q 004203 138 T------------------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIA 198 (768)
Q Consensus 138 t------------------g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~sva 198 (768)
. .++...+.+|...|..+.|+| ++.++++++.|++|.|||.++.+.++.+ +|.+.|..+.
T Consensus 100 ~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs 178 (942)
T KOG0973|consen 100 EIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS 178 (942)
T ss_pred ccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceE
Confidence 2 146788999999999999999 9999999999999999999999888776 5999999999
Q ss_pred EcCCCCEEEEEECCe-EEEEEcCCCccc---cCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 199 FHASGELLAVASGHK-LYIWRYNMREET---SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 199 fSPDG~~LatgSdd~-I~IWDl~t~~~~---~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
|+|-|++|++-+||+ |++|++.+-... ..++........++.+.|||||++|++...
T Consensus 179 ~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 179 WDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred ECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 999999999999877 999997653322 222222233567899999999998887543
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=7.3e-17 Score=185.42 Aligned_cols=192 Identities=23% Similarity=0.319 Sum_probs=162.5
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g 150 (768)
...-..+-.++||++|-+|++|+..+. +|.||-+-|..+.|++.-.+|+|+|+|.+|+||+..+++++..+.||..
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH 136 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH 136 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence 334456778899999999999999876 6889999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc---------------------------EE-E-Ee-cCCCCeEEEEEc
Q 004203 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---------------------------CI-G-SR-DFYRPIASIAFH 200 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~---------------------------~i-~-~l-~h~~~V~svafS 200 (768)
.|.|.+|+| ..++++|+|.|.+||+||+..-+ .+ + .+ +|...|+-++|+
T Consensus 137 YVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 137 YVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred EEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 999999999 99999999999999999985210 01 1 11 488899999999
Q ss_pred CCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203 201 ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL 268 (768)
Q Consensus 201 PDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L 268 (768)
|.-.+|++|+||+ |++|.+...+... .-...+|.+.|.++-|+|....+++.++ +||+.......++
T Consensus 216 pTlpliVSG~DDRqVKlWrmnetKaWE-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 216 PTLPLIVSGADDRQVKLWRMNETKAWE-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred CCcceEEecCCcceeeEEEecccccee-ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 9999999999988 9999987655422 3356789999999999999998888776 7777654444444
No 51
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=6.2e-18 Score=194.77 Aligned_cols=148 Identities=21% Similarity=0.333 Sum_probs=129.4
Q ss_pred CCC-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--------------------------------C---------
Q 004203 102 PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--------------------------------G--------- 139 (768)
Q Consensus 102 ~L~-gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t--------------------------------g--------- 139 (768)
.+. .|.+.|.++.||+||+|||+|+.|+.|+||.+.. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 355 8999999999999999999999999999998644 0
Q ss_pred -------------------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEc
Q 004203 140 -------------------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200 (768)
Q Consensus 140 -------------------~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafS 200 (768)
+++..|+||.+.|..+.||. .++|++++.|+|||||++...+|+..|.|.+.|+|++|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 12344579999999999997 789999999999999999999999999999999999999
Q ss_pred C-CCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 201 A-SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 201 P-DG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
| |.+++++|+ |++|+||++...+... ...-...|++++|.|||++.++++-
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~----W~Dl~~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVD----WNDLRDLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEe----ehhhhhhheeEEeccCCceEEEEEe
Confidence 9 678999999 8889999998876533 4455689999999999998887653
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.74 E-value=3.2e-18 Score=180.58 Aligned_cols=204 Identities=15% Similarity=0.250 Sum_probs=165.8
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203 78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (768)
Q Consensus 78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~ 153 (768)
.-+...+++|..|.+|++||.... .|.||++.|.|+.|. .+.|++|+.|.+|++||.++|++++++.+|...|.
T Consensus 204 QYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVL 281 (499)
T KOG0281|consen 204 QYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVL 281 (499)
T ss_pred EecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeE
Confidence 346778999999999999999864 689999999999996 67999999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE----ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCC
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS----RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSP 228 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~----l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~ 228 (768)
.+.|+. .++++++.|.++.+||+.+...+.. .+|...|+.+.|+ .++++++++|. |++|++.+.+.+.
T Consensus 282 hlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR-- 354 (499)
T KOG0281|consen 282 HLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR-- 354 (499)
T ss_pred EEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh--
Confidence 999965 8999999999999999988653322 3689999999996 45999999766 9999999998766
Q ss_pred eEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCccc---C---------CCCeEEEecCCCCC
Q 004203 229 RIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y---------PPPVICMAGAHSSS 291 (768)
Q Consensus 229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~---~---------p~~~V~l~d~~s~d 291 (768)
.+.+|+..|.++++ .|++++++++ +|++..|...+.|..+..-.. | =...+.+|+.+.+.
T Consensus 355 -tl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 355 -TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred -hhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEeccccc
Confidence 78899999999988 6776666555 777776666555543322211 0 12578888887666
Q ss_pred CC
Q 004203 292 HP 293 (768)
Q Consensus 292 ~~ 293 (768)
+.
T Consensus 432 dp 433 (499)
T KOG0281|consen 432 DP 433 (499)
T ss_pred CC
Confidence 54
No 53
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.1e-16 Score=177.90 Aligned_cols=219 Identities=19% Similarity=0.206 Sum_probs=176.3
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE-EecCCCC
Q 004203 78 RDARRGLASWVEAESLHHLRPKYC----PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRT 151 (768)
Q Consensus 78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~g-H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~g~ 151 (768)
...+..|+.|..+|.|.+||.... .+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...
T Consensus 226 s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe 303 (484)
T KOG0305|consen 226 SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE 303 (484)
T ss_pred CCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccce
Confidence 346899999999999999998765 4666 99999999999 77899999999999999998776544 8899999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCC-CCEEEEEEC--C-eEEEEEcCCCcccc
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHAS-GELLAVASG--H-KLYIWRYNMREETS 226 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPD-G~~LatgSd--d-~I~IWDl~t~~~~~ 226 (768)
|..+.|++ |+.++|+|+.|+.+.|||....+++.. ..|...|..++|+|- ..+||+|++ | .|++||..++....
T Consensus 304 VCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~ 382 (484)
T KOG0305|consen 304 VCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID 382 (484)
T ss_pred eeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec
Confidence 99999999 999999999999999999977666555 579999999999994 558888873 3 39999999887644
Q ss_pred CCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCc
Q 004203 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPF 306 (768)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpi 306 (768)
.......|.+|.|++..+-|+++-. |+...+.+|...+ ........+...++
T Consensus 383 ----~vdtgsQVcsL~Wsk~~kEi~sthG---------------------~s~n~i~lw~~ps---~~~~~~l~gH~~RV 434 (484)
T KOG0305|consen 383 ----SVDTGSQVCSLIWSKKYKELLSTHG---------------------YSENQITLWKYPS---MKLVAELLGHTSRV 434 (484)
T ss_pred ----ccccCCceeeEEEcCCCCEEEEecC---------------------CCCCcEEEEeccc---cceeeeecCCccee
Confidence 4557789999999999988877643 1223445555433 23333444556678
Q ss_pred eEEEEecCCCEEEEEecCCCC
Q 004203 307 LRPSFVRDDERISLQHTEHDS 327 (768)
Q Consensus 307 l~psFSpDG~rIv~~~~d~~~ 327 (768)
+..+.||||..|+.+-.|+++
T Consensus 435 l~la~SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 435 LYLALSPDGETIVTGAADETL 455 (484)
T ss_pred EEEEECCCCCEEEEecccCcE
Confidence 889999999999987666644
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.73 E-value=3.9e-16 Score=160.36 Aligned_cols=212 Identities=17% Similarity=0.226 Sum_probs=172.7
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR 149 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~ 149 (768)
...++.+|++++.|+++.+|+++.. ...+|.+.|-.++|+| ....|++++.|.+|++||++.+++...+....
T Consensus 28 wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~ 107 (313)
T KOG1407|consen 28 WNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG 107 (313)
T ss_pred EcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC
Confidence 3357889999999999999999865 3579999999999999 77899999999999999999999999888766
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSP 228 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~ 228 (768)
+.+. +.|+| ++.+++.+.+|..|.+.|.++.+.....+....++.++|+.++.+++...+ |.|.|..+..-+.+.
T Consensus 108 eni~-i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~-- 183 (313)
T KOG1407|consen 108 ENIN-ITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ-- 183 (313)
T ss_pred cceE-EEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc--
Confidence 7665 79999 999999999999999999999998888888888999999987776655554 679999988666544
Q ss_pred eEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCC
Q 004203 229 RIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLIT 303 (768)
Q Consensus 229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~s 303 (768)
.+..|.....+|.|+|+|+++++++. .||+..--+.+. -+...
T Consensus 184 -si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~-------------------------------isRld 231 (313)
T KOG1407|consen 184 -SIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC-------------------------------ISRLD 231 (313)
T ss_pred -ccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee-------------------------------ecccc
Confidence 67889999999999999999988764 555542111111 12245
Q ss_pred CCceEEEEecCCCEEEEEecC
Q 004203 304 PPFLRPSFVRDDERISLQHTE 324 (768)
Q Consensus 304 lpil~psFSpDG~rIv~~~~d 324 (768)
.|+...+||.||+.|+....|
T Consensus 232 wpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred CceEEEEeccCcceeeccCcc
Confidence 677788999999998875443
No 55
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=1.1e-16 Score=181.88 Aligned_cols=186 Identities=22% Similarity=0.265 Sum_probs=158.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeE-----E--
Q 004203 79 DARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSC-----L-- 142 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~--------~L~gH~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~-----l-- 142 (768)
+.+..|++++.|+++++|.++.. +..+|...|.+++++..+ .+|+++|.|.++++|++...+. .
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 45679999999999999987432 457999999999998744 6899999999999999876221 1
Q ss_pred --EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEE
Q 004203 143 --KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWR 218 (768)
Q Consensus 143 --~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWD 218 (768)
.+...|...|++++.+| +.+++|+||.|++.+||+++....+.++ +|...|.++.|+|..+.|+++|.|+ |+||.
T Consensus 455 ~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 12357999999999999 9999999999999999999988888886 5999999999999999999999766 99999
Q ss_pred cCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeE
Q 004203 219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL 268 (768)
Q Consensus 219 l~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L 268 (768)
+.+..+.. .+.+|...|..+.|-.+|++|++++. +|++++.++...+
T Consensus 534 is~fSClk---T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 534 ISTFSCLK---TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred eccceeee---eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh
Confidence 99998755 78899999999999999999988776 6777655544444
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.73 E-value=5.7e-17 Score=169.77 Aligned_cols=176 Identities=19% Similarity=0.245 Sum_probs=154.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCC------------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYCP------------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV 144 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~~------------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~ 144 (768)
.+.++++|++++-||.|.+|+..+++ |.-+...|.|+.||.|...|++|+.||.|++|.+++|.|++.
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr 300 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR 300 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH
Confidence 45789999999999999999998773 345889999999999999999999999999999999999999
Q ss_pred Ee-cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004203 145 LH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM 221 (768)
Q Consensus 145 l~-gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t 221 (768)
|. .|+..|+++.|+. |+..+++++.|.+++|--+++|++++.+ +|...|+...|++||.++++++ |++|++|+..+
T Consensus 301 FdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 301 FDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred hhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 86 8999999999999 8899999999999999999999999886 5899999999999999999998 55699999999
Q ss_pred CccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
.++.. .+...+....|+++..-|...--+..+
T Consensus 380 teC~~-Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 380 TECLS-TFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred hhhhh-hccCCCCcccceeEEEcCCCCceEEEE
Confidence 88765 344555677899998888765333333
No 57
>PTZ00420 coronin; Provisional
Probab=99.72 E-value=5.8e-16 Score=179.48 Aligned_cols=174 Identities=9% Similarity=0.033 Sum_probs=131.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeCCCCeEEEEEe
Q 004203 80 ARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKT-LASTHGDHTVKIIDCQTGSCLKVLH 146 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~------------~L~gH~~~VtslafSPDG~~-LaSgS~DgtVrVWDl~tg~~l~~l~ 146 (768)
.+..|++++.|+.|++||+... .+.+|...|.+++|+|++.. |++++.|++|+|||+++++.+..+.
T Consensus 86 ~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~ 165 (568)
T PTZ00420 86 FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN 165 (568)
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 3678999999999999998643 25689999999999998876 5789999999999999998877776
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEE-----EEEcCCCCEEEEEECC-----eEE
Q 004203 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIAS-----IAFHASGELLAVASGH-----KLY 215 (768)
Q Consensus 147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~s-----vafSPDG~~LatgSdd-----~I~ 215 (768)
|...|.+++|+| ++.+|++++.|+.|+|||+++++.+..+. |.+.+.. ..|++++.+|++++.+ .|+
T Consensus 166 -~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 166 -MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK 243 (568)
T ss_pred -cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence 567899999999 99999999999999999999998887764 6655432 3456898988887733 499
Q ss_pred EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
|||++..........+..+...+......++|.+++++.+
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 9999864431111111122333344444556776666544
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.72 E-value=2e-17 Score=174.59 Aligned_cols=219 Identities=19% Similarity=0.294 Sum_probs=165.0
Q ss_pred CCCCcceecccccccccCCCc-cccceeecCCcceeec----CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----
Q 004203 31 RNSRLRNVFGLLAQREVAPRT-KHSSKRLLGETARKCS----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC---- 101 (768)
Q Consensus 31 rssk~rnIf~~~akrEis~~~-~kv~k~~wd~s~~~~s----~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~---- 101 (768)
++.+.+.+|.+.-.-+.-..+ +....+.||.+...+. ...+.++... -+.+.|++|+.|.+|++||.+++
T Consensus 193 ~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLq-yd~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 193 RSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQ-YDERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred CcccCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeee-ccceEEEecCCCceEEEEeccCCchhh
Confidence 344555666653333322222 2233445554443322 1112233222 24558999999999999999988
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (768)
++.+|.+.|..+.|+ ..++++++.|.+|.+||+.... +.+.+.||...|+.+.|+ .+++++++.|.+|++|+
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWS 346 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEe
Confidence 467999999999998 5699999999999999997654 346778999999999995 47999999999999999
Q ss_pred CCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-
Q 004203 179 ASTAECIGSR-DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE- 255 (768)
Q Consensus 179 l~sg~~i~~l-~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s- 255 (768)
+.++++++++ +|...|.|+.+. ++++++|+. .+|++||+..+.... .+.+|..-|+++.| |.+.+++++-
T Consensus 347 ~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred ccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHH---HHhchHHhhhheee--cCceeeecccc
Confidence 9999999997 588899888764 889999985 559999999998765 78899999999999 4566777654
Q ss_pred ----eCCcCCC
Q 004203 256 ----VNDLDSS 262 (768)
Q Consensus 256 ----vwdl~sg 262 (768)
+||+..+
T Consensus 420 GkikvWdl~aa 430 (499)
T KOG0281|consen 420 GKIKVWDLQAA 430 (499)
T ss_pred ceEEEEecccc
Confidence 6776543
No 59
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=3e-17 Score=187.13 Aligned_cols=181 Identities=19% Similarity=0.223 Sum_probs=157.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~ 151 (768)
....|++++..|.|-+||+... .|..|++.|++++|++ ...+|++||.||+||+||++..+-..++.+....
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence 4677999999999999999762 3679999999999999 6678999999999999999999888889888889
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-E-EEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCC
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-I-GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSP 228 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i-~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~ 228 (768)
|+.|.|+|..+..|+++...|.|.+||++.... . +..+|.++|.++.|+|++.+||+|+.|+ |+|||..+... .+
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~--~~ 256 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA--KP 256 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc--cc
Confidence 999999998899999999999999999997543 2 2357999999999999999999999666 99999987655 34
Q ss_pred eEeecCCCCeEEEEEccCCCeEEEEEe--------eCCcCCC
Q 004203 229 RIVLRTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSS 262 (768)
Q Consensus 229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s--------vwdl~sg 262 (768)
........+|..|.|-|+.++.+++++ +||++..
T Consensus 257 ~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 257 KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 455667789999999999998888765 8888743
No 60
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.72 E-value=8.4e-17 Score=175.09 Aligned_cols=181 Identities=18% Similarity=0.231 Sum_probs=150.0
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC--CCe
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ--TGS 140 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~--tg~ 140 (768)
.+.......|++++.|+.|++||+... .+.+|...|.+++|++ +..+|++++.|+.+.|||++ +.+
T Consensus 184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 184 SWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred ccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 344445678999999999999998743 2569999999999999 77899999999999999999 566
Q ss_pred EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-cCCCCeEEEEEcCCCC-EEEEEE-CCeEEE
Q 004203 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPIASIAFHASGE-LLAVAS-GHKLYI 216 (768)
Q Consensus 141 ~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-~~i~~l-~h~~~V~svafSPDG~-~LatgS-dd~I~I 216 (768)
+....++|.+.|+|++|+|.++.+||+|+.|++|.|||+++- +++.++ .|...|..+.|+|... .|++++ |+.+.+
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV 343 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence 778889999999999999999999999999999999999974 344454 5899999999999876 556555 455999
Q ss_pred EEcCCCcccc--------C---CeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 217 WRYNMREETS--------S---PRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 217 WDl~t~~~~~--------~---~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
||+..-...+ . .+.-.+|...|..+.|+|+..+++++..
T Consensus 344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 9997644322 1 2344568899999999999999888876
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.71 E-value=3.2e-16 Score=163.75 Aligned_cols=241 Identities=17% Similarity=0.204 Sum_probs=181.1
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------------------CCCCCCCCeEEEEECCCCCEEEEEeCC
Q 004203 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----------------------PLSPPPRSTIAAAFSPDGKTLASTHGD 128 (768)
Q Consensus 71 ~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----------------------~L~gH~~~VtslafSPDG~~LaSgS~D 128 (768)
.....+.+.++..+++|+.|.+|++.|.+.. +|..|.+.|+++.|+|....|++++.|
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 3445566778999999999999999998721 356799999999999999999999999
Q ss_pred CeEEEEeCCCCeEE---EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----cCCCCeEEEEEcC
Q 004203 129 HTVKIIDCQTGSCL---KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHA 201 (768)
Q Consensus 129 gtVrVWDl~tg~~l---~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l----~h~~~V~svafSP 201 (768)
++|++||+..-... +.|+ ....|+++.|+| .|++++.|....+++|||+++-++...- +|.+.|+++.+++
T Consensus 194 ~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS 271 (430)
T ss_pred CeEEEEecccHHHHHHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence 99999998654322 3333 356799999999 9999999999999999999998887653 4888999999999
Q ss_pred CCCEEEEEECCe-EEEEEcCCCccccCCeEeecC-CCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeec--C
Q 004203 202 SGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS--P 272 (768)
Q Consensus 202 DG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h-~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~--~ 272 (768)
.|++.++++.|+ |++||--+.+++.. ....| ...|.+..|..+|+|+++++. .|.+.+++........ .
T Consensus 272 t~~lYvTaSkDG~IklwDGVS~rCv~t--~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t 349 (430)
T KOG0640|consen 272 TGSLYVTASKDGAIKLWDGVSNRCVRT--IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT 349 (430)
T ss_pred CccEEEEeccCCcEEeeccccHHHHHH--HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcc
Confidence 999999999655 99999888877551 12223 568999999999999999876 7877766655444332 1
Q ss_pred C---------------cccCC---CCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCE
Q 004203 273 G---------------YWRYP---PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER 317 (768)
Q Consensus 273 G---------------~~~~p---~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~r 317 (768)
| |.-+| ...++.|+....+...+... +...+..+..-||.+.-
T Consensus 350 grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl--gHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 350 GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL--GHNGAVRWIVHSPVEPA 410 (430)
T ss_pred cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc--CCCCCceEEEeCCCCCc
Confidence 1 11122 35577788777766665543 23333444444554433
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.71 E-value=2.1e-15 Score=160.65 Aligned_cols=243 Identities=14% Similarity=0.123 Sum_probs=178.1
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s 154 (768)
.....+++|+.|..-.+|+..++ ++.+|+.+|+++.||.||.+||+|.-+|.|+||+..++.....+......+.-
T Consensus 74 P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieW 153 (399)
T KOG0296|consen 74 PNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEW 153 (399)
T ss_pred CCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEE
Confidence 37788899999999999999987 57899999999999999999999999999999999999988888755666777
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCe---
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR--- 229 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~--- 229 (768)
+.||| -+.+|+.|+.||.|.+|.+.++...+. .+|..++++=.|.|||+.++++.+++ |++||..++.......
T Consensus 154 l~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 154 LKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred EEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence 99999 999999999999999999999544444 57999999999999999999999655 9999999875421000
Q ss_pred ---------------------------------------------EeecCCCCeEEEEEccCCCe--EEEEEe------e
Q 004203 230 ---------------------------------------------IVLRTRRSLRAVHFHPHAAP--LLLTAE------V 256 (768)
Q Consensus 230 ---------------------------------------------~l~~h~~~V~sVaFSPDG~~--LlaS~s------v 256 (768)
....+...+.+|.|.|.... |++.+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI 312 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence 00011112233333332211 222222 5
Q ss_pred CCcCCCCcce---------eEeecC-Ccc--cCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203 257 NDLDSSESSL---------TLATSP-GYW--RYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE 324 (768)
Q Consensus 257 wdl~sg~~~~---------~L~t~~-G~~--~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d 324 (768)
||+..+.-+. .+.-.. .++ ......|+.|+..++........ ...+++-.+++||.++|+-+.+|
T Consensus 313 yD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G---H~~~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 313 YDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG---HQMGILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred EecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec---CchheeEEEEcCCCcEEEEecCC
Confidence 6655433222 111111 111 11457889999888877766665 56688989999999999976554
Q ss_pred C
Q 004203 325 H 325 (768)
Q Consensus 325 ~ 325 (768)
.
T Consensus 390 ~ 390 (399)
T KOG0296|consen 390 N 390 (399)
T ss_pred C
Confidence 4
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.71 E-value=1.2e-15 Score=176.00 Aligned_cols=210 Identities=20% Similarity=0.270 Sum_probs=173.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 81 RRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
...+++++.+++|++|+...+ ++.+|.+.|.+++|..-+.+|++|+.|.++++||+.+|+|...+.+|...|.++
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 678999999999999999876 488999999999999878999999999999999999999999999999999998
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeec
Q 004203 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLR 233 (768)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~ 233 (768)
...+ .++++|+.|.+|++||+.++.++..+. |..+|.++..+ +.++++|+.+ .|++||+.+.+... .+.+
T Consensus 298 ~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---sl~g 369 (537)
T KOG0274|consen 298 TIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---SLSG 369 (537)
T ss_pred EccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee---eecC
Confidence 8754 888999999999999999999999987 99999999998 7889999855 59999999887655 7888
Q ss_pred CCCCeEEEEEccCCCeEEEEEe-----eCCcCCC-CcceeEeecCCccc------------CCCCeEEEecCCCCCCCCc
Q 004203 234 TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS-ESSLTLATSPGYWR------------YPPPVICMAGAHSSSHPGL 295 (768)
Q Consensus 234 h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg-~~~~~L~t~~G~~~------------~p~~~V~l~d~~s~d~~~L 295 (768)
|...|.++.+.+. ..++.++- +||++.. +....+..+.+... ...+.+.+|+.........
T Consensus 370 H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee
Confidence 9999999998775 44454443 8888876 44444433322211 1235678888777776666
Q ss_pred cccc
Q 004203 296 AEEV 299 (768)
Q Consensus 296 ~~~~ 299 (768)
....
T Consensus 449 ~~~~ 452 (537)
T KOG0274|consen 449 LEGR 452 (537)
T ss_pred eccC
Confidence 6553
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.6e-16 Score=175.16 Aligned_cols=176 Identities=19% Similarity=0.269 Sum_probs=156.9
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 81 RRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
...+.+|+.|+.|.++|+... .+.+|...|..+.|++|+++||+|++|..+.|||....+....+..|.++|..+
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL 349 (484)
T ss_pred CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence 556778899999999999865 378899999999999999999999999999999998888899999999999999
Q ss_pred EEccCCCCEEEEE--eCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCeE
Q 004203 156 RFHPLNPTIIASG--SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPRI 230 (768)
Q Consensus 156 afSP~dg~lLaSg--S~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS---dd~I~IWDl~t~~~~~~~~~ 230 (768)
+|+|....+||+| +.|+.|++||..+++.+........|.++.|++..+-|+++- ++.|.||++.+.+.. ..
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---~~ 426 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---AE 426 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---ee
Confidence 9999888999995 569999999999999999999999999999999998777765 344999999986653 37
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEeeCCc
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDL 259 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~svwdl 259 (768)
+.+|...|..++++|||..+++++.+..+
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGAADETL 455 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEecccCcE
Confidence 88999999999999999999988874433
No 65
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.70 E-value=4e-16 Score=166.60 Aligned_cols=177 Identities=20% Similarity=0.424 Sum_probs=137.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC---eEEEEEecC
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVLHGH 148 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH 148 (768)
....|++|..-+.|++|...++ .|.+|+.+|.++.||| ....|++||-|++|+|||++.+ .++.+ +.|
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh 301 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAH 301 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ecc
Confidence 3455777777788999988766 5889999999999999 5568999999999999999988 33333 889
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC---CcEEEEec-CCCCeEEEEEcCCCC--EEEEEECCeEEEEEcCCC
Q 004203 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---AECIGSRD-FYRPIASIAFHASGE--LLAVASGHKLYIWRYNMR 222 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s---g~~i~~l~-h~~~V~svafSPDG~--~LatgSdd~I~IWDl~t~ 222 (768)
.+.|+.|.|+. ...+||+|+.||+++|||++. ++++..+. |..+|+++.|+|... +.++|.|+.|.+||+...
T Consensus 302 ~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 302 NSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 99999999999 666999999999999999986 56677765 889999999999543 444444667999998654
Q ss_pred cc-------------ccCCeEeecC--CCCeEEEEEccCCCeEEEEEeeCC
Q 004203 223 EE-------------TSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAEVND 258 (768)
Q Consensus 223 ~~-------------~~~~~~l~~h--~~~V~sVaFSPDG~~LlaS~svwd 258 (768)
.. ..++..++-| .+.+..|.|++.-.-++++.....
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 32 0123344444 567889999998876776665443
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.69 E-value=1.5e-15 Score=164.42 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=160.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
....+.+|+.|+.+-++|.... .|+||...|+.+.|+|+...+++++.|..|+||......+......|..+|+.+
T Consensus 230 s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~l 309 (506)
T KOG0289|consen 230 SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGL 309 (506)
T ss_pred CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceee
Confidence 4678899999999999998876 588999999999999999999999999999999998888888889999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEe
Q 004203 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV 231 (768)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~---~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l 231 (768)
..+| .+++|++++.|++..+.|++++.++....+. -.+++.+|||||.+|.+|+.++ ++|||+..+.... .+
T Consensus 310 s~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a---~F 385 (506)
T KOG0289|consen 310 SLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA---KF 385 (506)
T ss_pred eecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc---cC
Confidence 9999 9999999999999999999999988776553 3589999999999999999555 9999999988544 67
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203 232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS 262 (768)
Q Consensus 232 ~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg 262 (768)
.+|..+|..|+|+.+|-|+++++. .||+|..
T Consensus 386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 789999999999999999998876 6666643
No 67
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=3.3e-16 Score=175.13 Aligned_cols=175 Identities=15% Similarity=0.207 Sum_probs=151.8
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g 150 (768)
.-...-.+++.++|..|++||.+.. ++.||+.-|-+++|+| |.+.|++++-|++||||.+.+..+..+++||..
T Consensus 105 vHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek 184 (794)
T KOG0276|consen 105 VHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK 184 (794)
T ss_pred ecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence 3456778899999999999999854 6999999999999999 889999999999999999999999999999999
Q ss_pred CcEEEEEccCCC--CEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcccc
Q 004203 151 TPWVVRFHPLNP--TIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETS 226 (768)
Q Consensus 151 ~V~sVafSP~dg--~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~ 226 (768)
.|+++.+-+ .+ .+|++|++|.+|+|||.++..|++++. |...|..+.|+|.=.++++|+. ++++||+-.+-+...
T Consensus 185 GVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 185 GVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred CcceEEecc-CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence 999999987 43 499999999999999999999999985 9999999999999999999995 559999987765432
Q ss_pred CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.+.-....|++|+-.+.+..++.+..
T Consensus 264 ---tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 264 ---TLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred ---hhhcCCceEEEEeecCCCCeEEEecc
Confidence 23334578899998888876666543
No 68
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.69 E-value=1.1e-14 Score=160.73 Aligned_cols=169 Identities=15% Similarity=0.254 Sum_probs=144.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe---cCCCCcE
Q 004203 81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH---GHRRTPW 153 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~---gH~g~V~ 153 (768)
--+++++++|+.|-+++-.-- .+..|..-|.|+.|+|||.+|++++.||+|.+||=++|+.+..|. +|.+.|+
T Consensus 160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf 239 (603)
T KOG0318|consen 160 PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF 239 (603)
T ss_pred ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence 367999999999999986422 467899999999999999999999999999999999999999998 8999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC----CeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCC
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR----PIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP 228 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~----~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~ 228 (768)
.+.|+| |+..+++++.|++++|||+.+.++++++.... .--.+-|. +..|++.+ +|.|.+++...... +
T Consensus 240 alsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~---~ 313 (603)
T KOG0318|consen 240 ALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSV---L 313 (603)
T ss_pred EEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCCh---h
Confidence 999999 99999999999999999999999999876433 33345576 44555555 77799999988873 4
Q ss_pred eEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 229 RIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
..+.+|.+.|+++..+||+++|++++-
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred heecccccceeEEEEcCCCCEEEeecc
Confidence 578899999999999999998776653
No 69
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=5.1e-15 Score=154.71 Aligned_cols=213 Identities=14% Similarity=0.195 Sum_probs=153.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-C-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-P-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-~-----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~ 153 (768)
....++.++.|++||+|+++.. . ...|.++|.+++|+.||..+++|+-|+.+++||+.+++ +..+..|.++|.
T Consensus 39 ~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvk 117 (347)
T KOG0647|consen 39 ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVK 117 (347)
T ss_pred cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeeccccee
Confidence 5566778999999999999863 2 45799999999999999999999999999999999996 566678999999
Q ss_pred EEEEccCCCC--EEEEEeCCCeEEEEECCCCcEEEEecCCC---------------------------------------
Q 004203 154 VVRFHPLNPT--IIASGSLDHEVRLWNASTAECIGSRDFYR--------------------------------------- 192 (768)
Q Consensus 154 sVafSP~dg~--lLaSgS~DgtVrLWDl~sg~~i~~l~h~~--------------------------------------- 192 (768)
.+.|-+ ... .|++||.|++|+.||.+...++.++....
T Consensus 118 t~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~Sp 196 (347)
T KOG0647|consen 118 TCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESP 196 (347)
T ss_pred EEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCc
Confidence 999987 555 89999999999999999876644433222
Q ss_pred ---CeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCC---------CCeEEEEEccCCCeEEEEEeeCCc
Q 004203 193 ---PIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR---------RSLRAVHFHPHAAPLLLTAEVNDL 259 (768)
Q Consensus 193 ---~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~---------~~V~sVaFSPDG~~LlaS~svwdl 259 (768)
.+.+++..+|.+..+.|+ .|++.|..++.+... ..+.+.-|+ ..|++|+|+|....|++.+++.
T Consensus 197 Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~-~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG-- 273 (347)
T KOG0647|consen 197 LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK-DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG-- 273 (347)
T ss_pred ccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc-CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCc--
Confidence 245666666666556666 555666655554221 123333443 2478899999877777776522
Q ss_pred CCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203 260 DSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ 321 (768)
Q Consensus 260 ~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~ 321 (768)
.+.|||-+... . ....+..+.|+...+|+.+|+..++.
T Consensus 274 ---------------------tf~FWDkdar~--k-Lk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 274 ---------------------TFSFWDKDART--K-LKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ---------------------eEEEecchhhh--h-hhccCcCCCccceeEecCCCCEEEEE
Confidence 23444422211 1 11223345577789999999988884
No 70
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.68 E-value=1.5e-15 Score=162.26 Aligned_cols=189 Identities=17% Similarity=0.290 Sum_probs=153.4
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC--------------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCe
Q 004203 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--------------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHT 130 (768)
Q Consensus 72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~--------------------~L~gH~~~VtslafSP-DG~~LaSgS~Dgt 130 (768)
.+...........++|++.|.|++|++... ++.+|...=++++||| .-..|++|.--+.
T Consensus 156 Rvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~ 235 (440)
T KOG0302|consen 156 RVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKG 235 (440)
T ss_pred eeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccc
Confidence 333333446677889999999999998621 3568998899999999 3334678888889
Q ss_pred EEEEeCCCCeEE---EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCeEEEEEcCCCC
Q 004203 131 VKIIDCQTGSCL---KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---ECIGSRDFYRPIASIAFHASGE 204 (768)
Q Consensus 131 VrVWDl~tg~~l---~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg---~~i~~l~h~~~V~svafSPDG~ 204 (768)
|++|...+|.-. .-|.+|+..|-.++|||.....|+|++-|++|+|||++++ .++.+..|.+.|+.+.|+.+-.
T Consensus 236 I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~ 315 (440)
T KOG0302|consen 236 IHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP 315 (440)
T ss_pred eEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence 999998887532 4567899999999999988889999999999999999998 5566678999999999999988
Q ss_pred EEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004203 205 LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD 260 (768)
Q Consensus 205 ~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~ 260 (768)
+|++|+|++ ++|||++.-+.......+..|+.+|++|.|+|....+++.++ +||+.
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 999999766 999999987766545567779999999999998765555443 66665
No 71
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.68 E-value=1.8e-15 Score=157.87 Aligned_cols=163 Identities=23% Similarity=0.292 Sum_probs=133.9
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~-tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (768)
.+.+|++.|+.+.|+|+|..|++|+.|..|.+|++. .-+....+++|.++|..+.|.+ |+..+++++.|++|+.||++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEecc
Confidence 578999999999999999999999999999999953 3445678899999999999999 99999999999999999999
Q ss_pred CCcEEEEec-CCCCeEEEEEcCCCCEE-EEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe--
Q 004203 181 TAECIGSRD-FYRPIASIAFHASGELL-AVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-- 255 (768)
Q Consensus 181 sg~~i~~l~-h~~~V~svafSPDG~~L-atgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-- 255 (768)
+|++++.+. |.+-|+++.-+.-|..| .++++|+ +++||+++++... ....+..++++.|..++..+++++-
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----TFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh----ccccceeEEEEEecccccceeeccccC
Confidence 999999875 77788888755456544 5555555 9999999887644 4455778999999999998777664
Q ss_pred ---eCCcCCCCcceeEe
Q 004203 256 ---VNDLDSSESSLTLA 269 (768)
Q Consensus 256 ---vwdl~sg~~~~~L~ 269 (768)
+||++..+....+.
T Consensus 197 ~ikvWd~r~~d~~~~ls 213 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLS 213 (338)
T ss_pred ceeeeccccCcceEEee
Confidence 67776554444443
No 72
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.68 E-value=4.2e-16 Score=170.59 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=176.1
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g 150 (768)
...+++.|+.|++..++.+||+... ++..-.-.+.+++.|||.+..+++..||.|.|||+.+...++.|+||+.
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 3457888999999999999999865 2334445689999999999999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCe
Q 004203 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR 229 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~ 229 (768)
.+.||.+++ ||..|-+|+.|++||-||++.+..+....+...|.++.++|++.+|++|..+. +.+......+. .
T Consensus 553 GascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k----y 627 (705)
T KOG0639|consen 553 GASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK----Y 627 (705)
T ss_pred CceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc----e
Confidence 999999999 99999999999999999999999888888889999999999999999999655 88887766553 2
Q ss_pred EeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEE
Q 004203 230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRP 309 (768)
Q Consensus 230 ~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p 309 (768)
.+..|...|.++.|.+.|+++++++.++-+..|+.+. |. .|+-. ....+++.+
T Consensus 628 qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy------Ga------siFqs---------------kE~SsVlsC 680 (705)
T KOG0639|consen 628 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------GA------SIFQS---------------KESSSVLSC 680 (705)
T ss_pred eecccccEEEEEEecccCceeeecCchhhhhhccCcc------cc------ceeec---------------cccCcceee
Confidence 4667899999999999999999999866555443211 10 11110 123456678
Q ss_pred EEecCCCEEEEEec
Q 004203 310 SFVRDDERISLQHT 323 (768)
Q Consensus 310 sFSpDG~rIv~~~~ 323 (768)
-.|.|+++|+.+..
T Consensus 681 DIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 681 DISFDDKYIVTGSG 694 (705)
T ss_pred eeccCceEEEecCC
Confidence 88999999997433
No 73
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.68 E-value=1.9e-15 Score=164.67 Aligned_cols=181 Identities=18% Similarity=0.255 Sum_probs=150.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe----
Q 004203 80 ARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---- 140 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~--------------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~---- 140 (768)
+...+++....+.|.+||.... .|.+|.+.-++++|++ ..-+|++++.|++|++||+....
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~ 215 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK 215 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc
Confidence 3455667788899999997632 4678999889999999 55689999999999999996542
Q ss_pred ---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC--CcEEEE-ecCCCCeEEEEEcCCC-CEEEEEE-CC
Q 004203 141 ---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST--AECIGS-RDFYRPIASIAFHASG-ELLAVAS-GH 212 (768)
Q Consensus 141 ---~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s--g~~i~~-l~h~~~V~svafSPDG-~~LatgS-dd 212 (768)
....+.+|...|..++|++.+..+|++++.|+.+.|||+++ .++... -+|...|++++|+|-+ ..||+++ |+
T Consensus 216 ~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~ 295 (422)
T KOG0264|consen 216 VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK 295 (422)
T ss_pred cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence 35778999999999999999999999999999999999995 333333 4589999999999955 4778888 55
Q ss_pred eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCC
Q 004203 213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSS 262 (768)
Q Consensus 213 ~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg 262 (768)
+|.+||+|+... .+..+.+|...|..|.|||+...++++++ +||+...
T Consensus 296 tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 296 TVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred cEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 599999998876 56788899999999999999998888876 7777643
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.68 E-value=7.1e-16 Score=161.21 Aligned_cols=158 Identities=28% Similarity=0.403 Sum_probs=132.7
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC------------C------eEEEEEecCCCCcEEEEEccCCC
Q 004203 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------------G------SCLKVLHGHRRTPWVVRFHPLNP 162 (768)
Q Consensus 101 ~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t------------g------~~l~~l~gH~g~V~sVafSP~dg 162 (768)
+.+..|+..+.+.+||+||.++++|+.|..|+|+|++. + -.+++|..|...|+++.|+| ..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hh
Confidence 35778999999999999999999999999999999861 1 24678889999999999999 99
Q ss_pred CEEEEEeCCCeEEEEECCCCcEE---EEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCe
Q 004203 163 TIIASGSLDHEVRLWNASTAECI---GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSL 238 (768)
Q Consensus 163 ~lLaSgS~DgtVrLWDl~sg~~i---~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V 238 (768)
.+|+++++|++|++||+...... +.+....+|.++.|+|.|.+|++|.+.- +++||+.+-++-.....-.+|...|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 99999999999999999865433 3355667999999999999999999876 9999999987644333455688999
Q ss_pred EEEEEccCCCeEEEEEeeCCc
Q 004203 239 RAVHFHPHAAPLLLTAEVNDL 259 (768)
Q Consensus 239 ~sVaFSPDG~~LlaS~svwdl 259 (768)
++|.+++.|+..++++.+..+
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~I 285 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAI 285 (430)
T ss_pred eEEEecCCccEEEEeccCCcE
Confidence 999999999977766653333
No 75
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=3.3e-14 Score=148.20 Aligned_cols=176 Identities=17% Similarity=0.222 Sum_probs=133.4
Q ss_pred CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203 82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa 156 (768)
..+++.+.|+.|++||..+++ +..+ ..+.+++|+|||+.+ ++++.++.|++||+.+++.+..+..+.. +..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 356788899999999998763 3333 447789999999977 5667889999999999988877765544 56789
Q ss_pred EccCCCCEEE-EEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEeec
Q 004203 157 FHPLNPTIIA-SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR 233 (768)
Q Consensus 157 fSP~dg~lLa-SgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~~l~~ 233 (768)
|+| +++.++ ++..|+.|++||+++++.+..+.....+..++|+|+|+++++++.+. +.+||..+.+... ...
T Consensus 80 ~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~----~~~ 154 (300)
T TIGR03866 80 LHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD----NVL 154 (300)
T ss_pred ECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE----EEE
Confidence 999 666554 45678999999999988877776666678899999999999888643 7788987765422 112
Q ss_pred CCCCeEEEEEccCCCeEEEEEe------eCCcCCCCc
Q 004203 234 TRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES 264 (768)
Q Consensus 234 h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~~ 264 (768)
....+..+.|+|+|+++++++. +|++..++.
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 3345678999999998866542 777765543
No 76
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=1e-15 Score=174.02 Aligned_cols=180 Identities=19% Similarity=0.273 Sum_probs=158.9
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL 142 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l 142 (768)
.++...++++.|++|++||.... +...-+..|.|+.+||||++|+.+--|.+|+||-+++-+..
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf 543 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF 543 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee
Confidence 46788999999999999998632 11134567999999999999999999999999999999999
Q ss_pred EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcC
Q 004203 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYN 220 (768)
Q Consensus 143 ~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~ 220 (768)
..+.||.-+|.|+..+| |++++++|+.|++|++|-+.-|.|-+. ++|.+.|.++.|-|+...+.+++ +++|+-||-.
T Consensus 544 lsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 544 LSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred eeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechh
Confidence 99999999999999999 999999999999999999999999877 67999999999999888888777 5559999988
Q ss_pred CCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCC
Q 004203 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS 262 (768)
Q Consensus 221 t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg 262 (768)
+-+..+ .+.+|...|++++.+|+|.++++++.+..++-|
T Consensus 623 kFe~iq---~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 623 KFEEIQ---KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred hhhhhe---eeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence 887655 788999999999999999988888876666644
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.66 E-value=4.1e-15 Score=161.08 Aligned_cols=174 Identities=19% Similarity=0.312 Sum_probs=150.1
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC--CCCc
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--RRTP 152 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--~g~V 152 (768)
.....+++.+.|..|++|..... ....|.++|+.+..+|.|.||+++++|++....|++++..+...... .-.+
T Consensus 271 ~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ 350 (506)
T KOG0289|consen 271 KDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEY 350 (506)
T ss_pred cchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccccee
Confidence 34566788899999999998755 35689999999999999999999999999999999999987766532 2348
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeE
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI 230 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~ 230 (768)
++.+||| ||.+|.+|..|+.|+|||+.++.....|. |.++|..++|+.+|-+|+++++++ |++||+++.+... ..
T Consensus 351 ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k--t~ 427 (506)
T KOG0289|consen 351 TSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK--TI 427 (506)
T ss_pred EEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc--ee
Confidence 8999999 99999999999999999999998877775 899999999999999999999887 9999999887533 23
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEe
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.......|.++.|.+.|.+++++++
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecc
Confidence 3344558999999999999988865
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.66 E-value=4.9e-15 Score=152.68 Aligned_cols=153 Identities=16% Similarity=0.302 Sum_probs=137.1
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s 181 (768)
.+++|.++++-+.|+.+|.+|++++.|.++.||-..+|+.+.++.||++.|+++..+- +.+.+++|+.|.+++|||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 3679999999999999999999999999999999989999999999999999999988 899999999999999999999
Q ss_pred CcEEEEecCCCCeEEEEEcCCCCEEEEEECCe------EEEEEcCCCc----cccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203 182 AECIGSRDFYRPIASIAFHASGELLAVASGHK------LYIWRYNMRE----ETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (768)
Q Consensus 182 g~~i~~l~h~~~V~svafSPDG~~LatgSdd~------I~IWDl~t~~----~~~~~~~l~~h~~~V~sVaFSPDG~~Ll 251 (768)
|+++..++...+|..+.|+++|.+++...++. |.++|++... ...+..++..+...++.+.|+|-+++|+
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 99999999999999999999999998888642 9999998543 1122345666788999999999999888
Q ss_pred EEEe
Q 004203 252 LTAE 255 (768)
Q Consensus 252 aS~s 255 (768)
++.+
T Consensus 164 ~Ghe 167 (327)
T KOG0643|consen 164 AGHE 167 (327)
T ss_pred EecC
Confidence 8765
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=2.1e-15 Score=162.37 Aligned_cols=238 Identities=13% Similarity=0.135 Sum_probs=177.6
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH- 146 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~- 146 (768)
...+.+|++|++++.|.+..+|+.... ++.+|..+|.-+.||||.++|++|+.|..+++||+.+|+....+.
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 335578999999999999999987643 578999999999999999999999999999999999999887774
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCc
Q 004203 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASGH-KLYIWRYNMRE 223 (768)
Q Consensus 147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~ 223 (768)
+++..+.+++|.| |+..+++|+.|+++..||+.... ...+. ....|.+++.++||++++....+ +|++++..+..
T Consensus 310 ~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 310 GLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred CcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 3467899999999 99999999999999999997543 33332 22468999999999988877755 59999988776
Q ss_pred cccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeec-----------CCcc-c-----CCCCe
Q 004203 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS-----------PGYW-R-----YPPPV 281 (768)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~-----------~G~~-~-----~p~~~ 281 (768)
... +.....+|++++.|.||+++++.-. .||+....-......+ .|+. . .....
T Consensus 388 dr~----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k 463 (519)
T KOG0293|consen 388 DRG----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK 463 (519)
T ss_pred hhc----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence 533 4556689999999999998887544 7888743322222111 1111 0 12356
Q ss_pred EEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203 282 ICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ 321 (768)
Q Consensus 282 V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~ 321 (768)
|++|...++..... .++.+-.+-.++|+|.+.++.+-
T Consensus 464 vyIWhr~sgkll~~---LsGHs~~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 464 VYIWHRISGKLLAV---LSGHSKTVNCVSWNPADPEMFAS 500 (519)
T ss_pred EEEEEccCCceeEe---ecCCcceeeEEecCCCCHHHhhc
Confidence 77777655544333 33344344467788877776664
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.66 E-value=2.5e-15 Score=160.76 Aligned_cols=180 Identities=17% Similarity=0.234 Sum_probs=148.6
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC-----------------------------CCCCCCCCeEEEEECCCCCEEEEE
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYC-----------------------------PLSPPPRSTIAAAFSPDGKTLAST 125 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~-----------------------------~L~gH~~~VtslafSPDG~~LaSg 125 (768)
+....++.++++++.|..|++|+.+.. .+.+|.++|.++.|++ ...++++
T Consensus 199 Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~ 277 (423)
T KOG0313|consen 199 VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSV 277 (423)
T ss_pred EEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEee
Confidence 344568899999999999999993210 2569999999999997 7799999
Q ss_pred eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc--E--EEEecCCCCeEEEEEcC
Q 004203 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--C--IGSRDFYRPIASIAFHA 201 (768)
Q Consensus 126 S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~--~--i~~l~h~~~V~svafSP 201 (768)
+.|++|++||++++.+...+.+ ...+.++..+| ..++|++|+.|..++|||-+++. . +...+|..-|.++.|+|
T Consensus 278 SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 278 SWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred cccceEEEEEeecccceeeeec-CcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence 9999999999999999888875 45699999999 99999999999999999999864 2 23357999999999999
Q ss_pred CCC-EEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203 202 SGE-LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (768)
Q Consensus 202 DG~-~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~ 260 (768)
... +|++++ |+++++||+++... ....+.+|...|.++.|+.. ..|++++.+..++
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLR 413 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEEeccCC-ceEEeccCcceEE
Confidence 877 566666 56699999999875 34578889999999999854 4466666555554
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.66 E-value=4.2e-16 Score=159.16 Aligned_cols=213 Identities=18% Similarity=0.185 Sum_probs=169.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCC-C--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEecCCCCcEEEE
Q 004203 81 RRGLASWVEAESLHHLRPKYCP-L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTPWVVR 156 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~~-L--~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~g~V~sVa 156 (768)
-.+.++++.|=+-++||.-++. + -.|+.-|.+++|+.|.++|++|+.+..+||||++..+ +.+.+.+|.+.|+.+.
T Consensus 71 a~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~ 150 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVL 150 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEE
Confidence 3556678888899999998872 2 3689999999999999999999999999999998754 5678899999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCC
Q 004203 157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRR 236 (768)
Q Consensus 157 fSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~ 236 (768)
|.. ..+.|++.+.|++||+||.++++.++.+..+.+|+++..++||++|..+....|.+||..+-+... ...-..
T Consensus 151 wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK----s~k~P~ 225 (334)
T KOG0278|consen 151 WCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK----SYKMPC 225 (334)
T ss_pred Eec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee----eccCcc
Confidence 998 778888889999999999999999999999999999999999999998888889999998876433 334567
Q ss_pred CeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCC
Q 004203 237 SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE 316 (768)
Q Consensus 237 ~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~ 316 (768)
.|.+...+|+-..+++++++-.+. ..+-.++..+... ..+...|+..+.|||||.
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~-----------------------kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVY-----------------------KFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred ccccccccCCCceEEecCcceEEE-----------------------EEeccCCceeeec--ccCCCCceEEEEECCCCc
Confidence 899999999998777776521110 0111122222221 234556788899999998
Q ss_pred EEEEEec
Q 004203 317 RISLQHT 323 (768)
Q Consensus 317 rIv~~~~ 323 (768)
.-+.+..
T Consensus 281 ~yAsGSE 287 (334)
T KOG0278|consen 281 LYASGSE 287 (334)
T ss_pred eeeccCC
Confidence 7776433
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.65 E-value=1.9e-16 Score=165.97 Aligned_cols=161 Identities=19% Similarity=0.264 Sum_probs=140.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE--------ecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (768)
Q Consensus 105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l--------~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL 176 (768)
+.+.-+.|..|||||++|++|+.||-|.+||..+|+..+.+ --+..+|.|+.|+. |...+++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence 45667899999999999999999999999999999865544 34678999999999 9999999999999999
Q ss_pred EECCCCcEEEEec--CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 177 WNASTAECIGSRD--FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 177 WDl~sg~~i~~l~--h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
|.+++|.|++.+. |...|+++.|+.|+..+.+++.| .+++.-+.+++... .+.+|...|+.+.|++||.++++.
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCccccccceEEcCCCCeEEEe
Confidence 9999999999875 89999999999999999999855 59999999998755 678899999999999999999887
Q ss_pred Ee-----eCCcCCCCcceeEe
Q 004203 254 AE-----VNDLDSSESSLTLA 269 (768)
Q Consensus 254 ~s-----vwdl~sg~~~~~L~ 269 (768)
++ +|+.++.++..++.
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFK 387 (508)
T ss_pred cCCccEEEecCcchhhhhhcc
Confidence 65 77777666654443
No 83
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.64 E-value=9e-15 Score=150.78 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=150.5
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203 78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (768)
Q Consensus 78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~ 153 (768)
..++..|++++.|.+..+|-...+ ++.+|++.|.+++.+-+.+++++|+.|.++++||+++|+++..++ ...+|.
T Consensus 19 N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk 97 (327)
T KOG0643|consen 19 NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVK 97 (327)
T ss_pred cCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeE
Confidence 357889999999999999988655 688999999999999999999999999999999999999999997 456799
Q ss_pred EEEEccCCCCEEEEEeCC-----CeEEEEECCC-------CcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEc
Q 004203 154 VVRFHPLNPTIIASGSLD-----HEVRLWNAST-------AECIGSR-DFYRPIASIAFHASGELLAVASG-HKLYIWRY 219 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~D-----gtVrLWDl~s-------g~~i~~l-~h~~~V~svafSPDG~~LatgSd-d~I~IWDl 219 (768)
.+.|++ ++++++....+ +.|.++|++. .++...+ .+.+.++.+-|.|-++.|++|.+ +.|.+||+
T Consensus 98 ~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da 176 (327)
T KOG0643|consen 98 RVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDA 176 (327)
T ss_pred EEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEc
Confidence 999999 88887776543 5899999983 4444443 46789999999999999999985 45999999
Q ss_pred CCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004203 220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS 261 (768)
Q Consensus 220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~s 261 (768)
+++.... .....|...|+.++|++|..++++++. .+|+++
T Consensus 177 ~~g~~~v--~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 177 RTGKELV--DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ccCceee--echhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 9986532 234557889999999999999888765 555553
No 84
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3e-16 Score=177.87 Aligned_cols=172 Identities=20% Similarity=0.330 Sum_probs=152.8
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203 78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (768)
Q Consensus 78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~ 153 (768)
+...+.++.|++|..+.+|..... .|.+|...|.++.|+++..+|+.|+.+|+||+||+++++.+++|.||...+.
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT 116 (825)
T ss_pred eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc
Confidence 456788899999999999987643 4789999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEe
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV 231 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l 231 (768)
.+.|+| -+.++++|+.|..+++||++...|...++ |...+..+.|+|+|++++.++++. ++|||+..++... .+
T Consensus 117 sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~---ef 192 (825)
T KOG0267|consen 117 SVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK---EF 192 (825)
T ss_pred eeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc---cc
Confidence 999999 99999999999999999999878888765 788899999999999999999754 9999998887644 56
Q ss_pred ecCCCCeEEEEEccCCCeEEEE
Q 004203 232 LRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 232 ~~h~~~V~sVaFSPDG~~LlaS 253 (768)
..|...+.++.|+|..-.+..+
T Consensus 193 ~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 193 KSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred ccccccccccccCchhhhhccC
Confidence 6789999999999987644333
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=9.1e-16 Score=172.45 Aligned_cols=187 Identities=19% Similarity=0.271 Sum_probs=159.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eEEEEEe
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLH 146 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l~ 146 (768)
..+++|++++.|+.|++|+.... .++.|..-|++++...+|+.|+++|.|.+|++|+...+ -++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 45668999999999999998643 36689999999999999999999999999999999877 5788899
Q ss_pred cCCCCcEEEEE-ccCCCCEEEEEeCCCeEEEEECCCCcE--EEEe----------cCCCCeEEEEEcCCCCEEEEEECCe
Q 004203 147 GHRRTPWVVRF-HPLNPTIIASGSLDHEVRLWNASTAEC--IGSR----------DFYRPIASIAFHASGELLAVASGHK 213 (768)
Q Consensus 147 gH~g~V~sVaf-SP~dg~lLaSgS~DgtVrLWDl~sg~~--i~~l----------~h~~~V~svafSPDG~~LatgSdd~ 213 (768)
.|...|.|+++ .+ +..++|+|+.|+.|+|||+.++.. +..+ ++...|++++.++.|..|+.|+-.+
T Consensus 115 ~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 115 THKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred cccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 99999999999 66 899999999999999999998732 2221 4667899999999998888888655
Q ss_pred -EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004203 214 -LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA 269 (768)
Q Consensus 214 -I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~ 269 (768)
|++||.++.+... .+.+|...|+.+..++||..++++++ +|++...++..++.
T Consensus 194 ~lr~wDprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred ceEEecccccccee---eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 9999999998655 77899999999999999999998876 77777555544443
No 86
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=1.1e-14 Score=152.98 Aligned_cols=171 Identities=18% Similarity=0.200 Sum_probs=147.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~--~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
-.+.++++|+.|.+|++||.... .+..|.+.|+++.|.++-. .|++|+.||.|.+|+....+++..+++|.+.|
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V 130 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV 130 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc
Confidence 37899999999999999999865 5778999999999999765 99999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEee
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVL 232 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~ 232 (768)
+.++.|| .+++.++.+.|+.+++||+-.|+.-..+......+.+.|+|.|.+++....++|-+|.+.+..... ..
T Consensus 131 t~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~----~i 205 (362)
T KOG0294|consen 131 TDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFR----EI 205 (362)
T ss_pred ceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhh----hh
Confidence 9999999 999999999999999999999987777666666667999999999999999999999998876533 22
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe
Q 004203 233 RTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 233 ~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.....+.++.|-..+ ++++++.
T Consensus 206 ~~~~r~l~~~~l~~~-~L~vG~d 227 (362)
T KOG0294|consen 206 ENPKRILCATFLDGS-ELLVGGD 227 (362)
T ss_pred hccccceeeeecCCc-eEEEecC
Confidence 333567777776444 4555554
No 87
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.5e-16 Score=178.52 Aligned_cols=171 Identities=23% Similarity=0.332 Sum_probs=152.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
....|+.+..+|+|++||++.. +|.+|...+..+.|+|-+.++++++.|..+++||.+...|...+++|...|..+
T Consensus 81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 4566788999999999999976 588999999999999999999999999999999999888999999999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeec
Q 004203 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLR 233 (768)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~ 233 (768)
+|+| +|+++++++.|.+++|||+..|+....|. |.+.+.++.|+|..-+++.|+.++ +++||+++-+.+. ....
T Consensus 161 ~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~---s~~~ 236 (825)
T KOG0267|consen 161 RLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS---SGKP 236 (825)
T ss_pred eecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee---ccCC
Confidence 9999 99999999999999999999999999987 899999999999999999999655 9999999776543 2223
Q ss_pred CCCCeEEEEEccCCCeEEEEE
Q 004203 234 TRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 234 h~~~V~sVaFSPDG~~LlaS~ 254 (768)
....|.++.|+|+++.++.+.
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred ccCCceeeeecCCceeeecCc
Confidence 367899999999999655443
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=6.4e-15 Score=161.65 Aligned_cols=170 Identities=14% Similarity=0.167 Sum_probs=144.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCc
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTP 152 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~g~V 152 (768)
.++..++++++|+.++.||+.+. .+.+|++.|.|.+|+| ++..++|||.||+|++||+++. ..+..+ .|+.+|
T Consensus 121 ~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pV 199 (487)
T KOG0310|consen 121 QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPV 199 (487)
T ss_pred cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCce
Confidence 46788899999999999999876 5789999999999999 5668999999999999999887 556666 599999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCe
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPR 229 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~ 229 (768)
..+.+-| .|.+|++++.. .|++||+.+|. .+.... |...|+|+++..++..|++++ |+.+++||+.+-+...
T Consensus 200 e~vl~lp-sgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~--- 274 (487)
T KOG0310|consen 200 ESVLALP-SGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH--- 274 (487)
T ss_pred eeEEEcC-CCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE---
Confidence 9999999 88999998754 69999999654 444444 999999999999999999999 7779999976665432
Q ss_pred EeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 230 IVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 230 ~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
-..-.++|.+++.+||++.++++.+
T Consensus 275 -s~~~~~pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 275 -SWKYPGPVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred -eeecccceeeEEecCCCceEEEecc
Confidence 3345789999999999998887765
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.8e-15 Score=155.04 Aligned_cols=174 Identities=18% Similarity=0.235 Sum_probs=144.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s 154 (768)
.+..+++.+.|++||+|+...+ ++.+|...|....|+| .++.|+++|.|+++++||++.......+..|...+.+
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~ 195 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILC 195 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEe
Confidence 4556677799999999999865 6899999999999999 8899999999999999999875444558899999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEE-ecCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccccCCeE
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRI 230 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~-l~h~~~V~svafSPDG~-~LatgSdd~-I~IWDl~t~~~~~~~~~ 230 (768)
+.|+..+...+++|+.|+.|+.||+++-+ ++.. .+|.-.|..+.|+|... .|++++.|- ++|||...+.... ..
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~--e~ 273 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI--ET 273 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh--hh
Confidence 99999899999999999999999999743 3443 46888999999999754 788888665 9999998665422 34
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEe
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
...|..-|..+.||+.....++++.
T Consensus 274 ~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 274 VDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred hhccceEEeccccccccCceeeecc
Confidence 5678899999999997555555543
No 90
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=1.8e-15 Score=172.74 Aligned_cols=173 Identities=18% Similarity=0.283 Sum_probs=146.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCcE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPW 153 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~g~V~ 153 (768)
.-..|++|+.|+.|+.||++.. ++.+..+.|.++.|+| .+.+|+++.+.|.+.+||++.. ++...+..|.+.|.
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL 224 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence 3567899999999999999865 5778899999999999 8899999999999999999764 56788899999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcE--EEEecCCCCeEEEEEcCCCC-EEEEEE--CCe-EEEEEcCCCccccC
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAEC--IGSRDFYRPIASIAFHASGE-LLAVAS--GHK-LYIWRYNMREETSS 227 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~--i~~l~h~~~V~svafSPDG~-~LatgS--dd~-I~IWDl~t~~~~~~ 227 (768)
++.|+| ++.+||+|++|+.|+|||+.+++. +.++..-.++.++.|-|+.. +|++++ ++. |+|||++..-. +
T Consensus 225 c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--P 301 (839)
T KOG0269|consen 225 CLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--P 301 (839)
T ss_pred EEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--c
Confidence 999999 999999999999999999987654 45566778999999999876 566666 344 99999988765 3
Q ss_pred CeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
...+..|...++.++|......++.+++
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~s 329 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCS 329 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeec
Confidence 4567789999999999875555666655
No 91
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=9e-15 Score=148.54 Aligned_cols=149 Identities=16% Similarity=0.283 Sum_probs=129.6
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s 181 (768)
.+..|.++|..+.|+-||+|.++++.|.+|++|+...|.+++++.+|+..|..++.+. |...|++++.|+.|.+||+.+
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEccc
Confidence 3567999999999999999999999999999999999999999999999999999998 888999999999999999999
Q ss_pred CcEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 182 AECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 182 g~~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
|+..+.+. |...|+.+.|+.+...+++|+ |.++++||.++..... ...+......|.+|..+.. .|++++
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-iQildea~D~V~Si~v~~h--eIvaGS 162 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-IQILDEAKDGVSSIDVAEH--EIVAGS 162 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-cchhhhhcCceeEEEeccc--EEEeec
Confidence 99999874 889999999999999999999 4559999999876522 2234446788999988643 244443
No 92
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=3.6e-14 Score=161.74 Aligned_cols=197 Identities=18% Similarity=0.232 Sum_probs=159.4
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-----CeEEEE
Q 004203 74 FEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSCLKV 144 (768)
Q Consensus 74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-----g~~l~~ 144 (768)
..-...++.+++.|...|.+.++|+... +...|.+.|.+++.+||++.+++||.|.+|++||+.- |...+.
T Consensus 417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred EEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 3335568899999999999999999865 4678999999999999999999999999999999732 211111
Q ss_pred Ee-------cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EE
Q 004203 145 LH-------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LY 215 (768)
Q Consensus 145 l~-------gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSdd~-I~ 215 (768)
++ .-...|.|+.+|| |+++++.+-.|.+|++|-+.+-+..-. ++|.-+|.|+..+||++.+++|+.|+ |+
T Consensus 497 lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred eeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceE
Confidence 11 1346799999999 999999999999999999999876554 67999999999999999999999776 99
Q ss_pred EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCC--cceeEeecCCc
Q 004203 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE--SSLTLATSPGY 274 (768)
Q Consensus 216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~--~~~~L~t~~G~ 274 (768)
+|-++-+.+-. .+..|...|.+|.|-|....+.+.+.+..++.|+ .-..+....||
T Consensus 576 iWGLdFGDCHK---S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H 633 (888)
T KOG0306|consen 576 IWGLDFGDCHK---SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH 633 (888)
T ss_pred Eeccccchhhh---hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc
Confidence 99999998744 6889999999999999877666666655555443 22344444555
No 93
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.62 E-value=4.1e-15 Score=152.04 Aligned_cols=177 Identities=18% Similarity=0.214 Sum_probs=152.7
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203 74 FEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (768)
Q Consensus 74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (768)
..+...+...|++++.++.++++|++.. ++.+|++.|..+.|....+.|++.++|++||+||.+++..+..+. -
T Consensus 105 ~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~ 183 (334)
T KOG0278|consen 105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-F 183 (334)
T ss_pred eEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-c
Confidence 3445667889999999999999999865 578999999999999999999999999999999999999999886 4
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004203 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS 227 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~ 227 (768)
...|.++..++ ++++|.. ..-+.|++||..+-..++.++.+..|.+...+|+...+++|+.+. ++.||+.+++....
T Consensus 184 ~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 184 NSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred CCCCcceeecc-CCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence 56799999999 8876554 556689999999999999999999999999999998888888655 99999999987551
Q ss_pred CeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
...+|-++|.+|.|+|||...++++.
T Consensus 262 --~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 262 --YNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred --cccCCCCceEEEEECCCCceeeccCC
Confidence 24789999999999999996555554
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.61 E-value=1.1e-14 Score=149.63 Aligned_cols=213 Identities=16% Similarity=0.220 Sum_probs=160.1
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE--EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (768)
Q Consensus 101 ~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (768)
.++.+|...|.+++|+.||..|++++.|+++++|+++..+.. ...++|++.|..++|+|...+++++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 457789999999999999999999999999999999877544 345789999999999998999999999999999999
Q ss_pred CCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeC
Q 004203 179 ASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (768)
Q Consensus 179 l~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svw 257 (768)
++++++...+...+.-..+.|+|+|++++++. ++.|.+.|.++.+... .......+..+.|+-++..++.+.+..
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN----EEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee----hhcccceeeeeeecCCCCEEEEecCCc
Confidence 99999999988777777899999999999999 5569999998876433 333456678889998887766665422
Q ss_pred CcC--CCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEec
Q 004203 258 DLD--SSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQS 335 (768)
Q Consensus 258 dl~--sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~ 335 (768)
.+. .......+.+.+. .+..++-..|+|||++++.+..|.
T Consensus 170 ~v~ILsypsLkpv~si~A----------------------------H~snCicI~f~p~GryfA~GsADA---------- 211 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKA----------------------------HPSNCICIEFDPDGRYFATGSADA---------- 211 (313)
T ss_pred eEEEEecccccccccccc----------------------------CCcceEEEEECCCCceEeeccccc----------
Confidence 211 1111122222222 234566779999999999743322
Q ss_pred cCCCceeeeecccCCCCCcCceeccCC
Q 004203 336 LRSSSSVRLLTYSTPSGQYELVLSPIA 362 (768)
Q Consensus 336 ~~ss~~~rl~~~~~~t~~~~~~v~P~~ 362 (768)
....|+....-....++=+|
T Consensus 212 -------lvSLWD~~ELiC~R~isRld 231 (313)
T KOG1407|consen 212 -------LVSLWDVDELICERCISRLD 231 (313)
T ss_pred -------eeeccChhHhhhheeecccc
Confidence 34455555555555555555
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.8e-14 Score=147.02 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=137.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCe--EEEEEecC
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGS--CLKVLHGH 148 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH 148 (768)
-+++|++++.|++|+++..... +|.+|.++|..++|.. -|.+||+++.||+|.||.-++|+ .......|
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h 101 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH 101 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence 4789999999999999998754 5889999999999987 89999999999999999988774 23456789
Q ss_pred CCCcEEEEEccCC-CCEEEEEeCCCeEEEEECCCC-c-E--EEEecCCCCeEEEEEcCC---C-----------CEEEEE
Q 004203 149 RRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTA-E-C--IGSRDFYRPIASIAFHAS---G-----------ELLAVA 209 (768)
Q Consensus 149 ~g~V~sVafSP~d-g~lLaSgS~DgtVrLWDl~sg-~-~--i~~l~h~~~V~svafSPD---G-----------~~Latg 209 (768)
...|++++|.|.+ +-.|++++.||.|.|.+.++. . . .....|.-.|++++|.|. | +.|++|
T Consensus 102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg 181 (299)
T KOG1332|consen 102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG 181 (299)
T ss_pred cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc
Confidence 9999999999943 347888999999999998864 2 1 222468889999999996 5 568888
Q ss_pred ECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCC
Q 004203 210 SGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA 247 (768)
Q Consensus 210 Sdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG 247 (768)
+.| .|+||+.....-.. ...+.+|.+.|+.++|.|.-
T Consensus 182 GcDn~VkiW~~~~~~w~~-e~~l~~H~dwVRDVAwaP~~ 219 (299)
T KOG1332|consen 182 GCDNLVKIWKFDSDSWKL-ERTLEGHKDWVRDVAWAPSV 219 (299)
T ss_pred CCccceeeeecCCcchhh-hhhhhhcchhhhhhhhcccc
Confidence 855 49999998874433 23478899999999999975
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.61 E-value=2.5e-15 Score=162.02 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=147.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 79 DARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
.+...+++++.|..|++|+.... .|.+-.++|++++|.+++++++++++|+.+++|++...+...+|.||++.|
T Consensus 185 ~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkV 264 (459)
T KOG0288|consen 185 RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKV 264 (459)
T ss_pred cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccce
Confidence 45678999999999999998754 467788899999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEe
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIV 231 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l 231 (768)
+++.|.- +...+++|+.|.+|++||+....|.++.-....+..++.+ ...++++- |.+|++||.+...... .+
T Consensus 265 t~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~---sv 338 (459)
T KOG0288|consen 265 TAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR---SV 338 (459)
T ss_pred eeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceee---Ee
Confidence 9999988 5555999999999999999999999887777777777766 33444444 4559999999987644 33
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203 232 LRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (768)
Q Consensus 232 ~~h~~~V~sVaFSPDG~~LlaS~svwdl~ 260 (768)
. ..+.|+++..+++|..+++++..+.+.
T Consensus 339 ~-~gg~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 339 P-LGGRVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred e-cCcceeeEeeccCCeEEeeecCCCcee
Confidence 3 345999999999999998887655443
No 97
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=1.6e-14 Score=155.60 Aligned_cols=149 Identities=18% Similarity=0.190 Sum_probs=127.9
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (768)
.+..|+..|.-+.||++|++||+++.|.+..+|++... +..+++.+|..+|..+.||| |.+++++++.|..+++||
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeecc
Confidence 47789999999999999999999999999999987543 34688899999999999999 889999999999999999
Q ss_pred CCCCcEEEEecCC--CCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecC-CCCeEEEEEccCCCeEEEEE
Q 004203 179 ASTAECIGSRDFY--RPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 179 l~sg~~i~~l~h~--~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h-~~~V~sVaFSPDG~~LlaS~ 254 (768)
+.+|++...+.+. ..+.+++|.|||..+++|+-+ +|..||++...... ..+. ...|.+++.++||+++++.+
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~----W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN----WEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc----ccccccceeEEEEEcCCCcEEEEEe
Confidence 9999998887654 789999999999999999954 59999998765322 2222 24699999999999998877
Q ss_pred e
Q 004203 255 E 255 (768)
Q Consensus 255 s 255 (768)
.
T Consensus 374 ~ 374 (519)
T KOG0293|consen 374 V 374 (519)
T ss_pred c
Confidence 4
No 98
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.60 E-value=1.5e-14 Score=161.69 Aligned_cols=257 Identities=17% Similarity=0.175 Sum_probs=176.2
Q ss_pred CCCcceecccccccccCCCccccceeecCCc--ceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-CCC----
Q 004203 32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGET--ARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-PLS---- 104 (768)
Q Consensus 32 ssk~rnIf~~~akrEis~~~~kv~k~~wd~s--~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~-~L~---- 104 (768)
.+|||++-+....+..-+.+.+......... ..+++ .....+--.+..|.|-++++... +|.
T Consensus 553 iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan-----------~~rvAVPL~g~gG~iai~el~~PGrLPDgv~ 621 (1012)
T KOG1445|consen 553 ISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCAN-----------NKRVAVPLAGSGGVIAIYELNEPGRLPDGVM 621 (1012)
T ss_pred chheeeccCccccchhhhhhhhcccccCCCccCceeec-----------cceEEEEecCCCceEEEEEcCCCCCCCcccc
Confidence 4667777666666654444444433322211 11111 11111122345788999998753 322
Q ss_pred ---CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCe
Q 004203 105 ---PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173 (768)
Q Consensus 105 ---gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dgt 173 (768)
.....|+++.|+| |...|+++++||.|++|.+..+ .....+++|...|+++.|||.-.+.|++++.|-+
T Consensus 622 p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 622 PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence 3456799999999 9999999999999999998654 3457889999999999999988899999999999
Q ss_pred EEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecC--CCCeEEEEEccCCCe
Q 004203 174 VRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAP 249 (768)
Q Consensus 174 VrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPDG~~ 249 (768)
|+|||+++++.... .+|.+.|..++|+|||+.+++.+ |++|++|+-++.+... ..... ...--.|.|.-||++
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv---~Eg~gpvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV---YEGKGPVGTRGARILWACDGRI 778 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc---ccCCCCccCcceeEEEEecCcE
Confidence 99999999887655 47999999999999999999998 5669999998876522 11111 122245778889998
Q ss_pred EEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEE
Q 004203 250 LLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ 321 (768)
Q Consensus 250 LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~ 321 (768)
+++++-...- .+.+.+.+.+.-+...|.+..-+..-..+.|.|.+|...+.+.
T Consensus 779 viv~Gfdk~S-------------------eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lflt 831 (1012)
T KOG1445|consen 779 VIVVGFDKSS-------------------ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLT 831 (1012)
T ss_pred EEEecccccc-------------------hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEe
Confidence 8877632211 1123333333334445555555555567788899998877763
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.60 E-value=1.1e-14 Score=157.20 Aligned_cols=180 Identities=17% Similarity=0.182 Sum_probs=148.4
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203 78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (768)
Q Consensus 78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~ 153 (768)
...+..+++.+.|+.+++|+.... +|.+|++.|+++.|......+++|+.|.+||+||+....|.+++. ....+.
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cn 306 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCN 306 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-cccccc
Confidence 346788889999999999999876 688999999999999877779999999999999999988887764 345567
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEee
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVL 232 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~ 232 (768)
.|..+ ...++||-.|++|++||+++..+.......+.|+++..+++|..|.+.+ |+.+.++|+++.+... ++...
T Consensus 307 DI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~-~~sA~ 382 (459)
T KOG0288|consen 307 DIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ-TFSAE 382 (459)
T ss_pred ceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEE-Eeecc
Confidence 77765 4778999999999999999999999999889999999999999888777 6779999999987543 22222
Q ss_pred c--CCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203 233 R--TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS 262 (768)
Q Consensus 233 ~--h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg 262 (768)
+ ....++.+.|||++.|+++++. +|++..+
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 1 2345899999999998887764 5555443
No 100
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.59 E-value=4e-14 Score=163.56 Aligned_cols=181 Identities=20% Similarity=0.278 Sum_probs=152.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s 154 (768)
..+..+++|+.|.++++||..++ .+.+|...|.++... +.++++|+.|.+|++|+++++.++..+.+|.++|++
T Consensus 259 ~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~ 336 (537)
T KOG0274|consen 259 SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNC 336 (537)
T ss_pred cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEE
Confidence 35889999999999999998876 588999999999876 568888999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC-ccccCCeEe
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR-EETSSPRIV 231 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~-~~~~~~~~l 231 (768)
+..+ +.++++|+.|++|++||+.+++++..+ +|...|.++.+... ..++.|+-|+ |++||+++. +... .+
T Consensus 337 v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~---tl 409 (537)
T KOG0274|consen 337 VQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH---TL 409 (537)
T ss_pred EEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh---hh
Confidence 9984 799999999999999999999999986 59999999988766 8888888545 999999998 6544 66
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEee
Q 004203 232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT 270 (768)
Q Consensus 232 ~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t 270 (768)
.+|..-|..+.+ .++.|+.+.. +||...++....+.+
T Consensus 410 ~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 410 QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred cCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 777777766665 4565555443 777776666666554
No 101
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.58 E-value=5.6e-14 Score=149.90 Aligned_cols=159 Identities=18% Similarity=0.297 Sum_probs=141.6
Q ss_pred CCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 004203 100 YCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (768)
Q Consensus 100 t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl 179 (768)
...|..|+..|.+++.+|+.+++++|+.|-.-.+|++.+|+....+.+|+..|.++.|+. ++.+||+|..+|.|+||+.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEc
Confidence 346788999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe--
Q 004203 180 STAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-- 255 (768)
Q Consensus 180 ~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-- 255 (768)
.++..+..+. .-..+.-+.|||.+.+|+.|+.++ +.+|.+.++... ..+.+|..++++=.|.|||+.+++...
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~---kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC---KVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee---eEecCCCCCcccccccCCCceEEEEecCc
Confidence 9999888875 556788899999999999999655 999999987543 367889999999999999998887654
Q ss_pred ---eCCcCCC
Q 004203 256 ---VNDLDSS 262 (768)
Q Consensus 256 ---vwdl~sg 262 (768)
+|+..++
T Consensus 213 ti~~Wn~ktg 222 (399)
T KOG0296|consen 213 TIIVWNPKTG 222 (399)
T ss_pred eEEEEecCCC
Confidence 6666554
No 102
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.58 E-value=9.6e-14 Score=144.69 Aligned_cols=176 Identities=17% Similarity=0.195 Sum_probs=144.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC-------------------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC
Q 004203 79 DARRGLASWVEAESLHHLRPKYCP-------------------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT 138 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~~-------------------L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~t 138 (768)
..++++++|+.|++|-+||++.-. -.+|+-.|.++.|-| |...|.+++.|.++||||..|
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence 468999999999999999997431 236888999999999 888999999999999999999
Q ss_pred CeEEEEEecCCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCE-EEEEE-CCe
Q 004203 139 GSCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGEL-LAVAS-GHK 213 (768)
Q Consensus 139 g~~l~~l~gH~g~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~-LatgS-dd~ 213 (768)
-+....|+ ..+.|++-+|+|-. ..++|+|.+|-.|+|.|+.+|.+..++ +|.+.|.++.|+|...+ |++|+ |+.
T Consensus 134 lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ 212 (397)
T KOG4283|consen 134 LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA 212 (397)
T ss_pred ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence 99888886 45679988998843 347888999999999999999999886 59999999999999885 56666 555
Q ss_pred EEEEEcCCCcc----------ccCC--eEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 214 LYIWRYNMREE----------TSSP--RIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 214 I~IWDl~t~~~----------~~~~--~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
|++||++.... ...+ ..-..|.+.|+.++|+.||.++++.+.
T Consensus 213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 99999987521 1111 113457789999999999999887665
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=5.3e-14 Score=158.47 Aligned_cols=172 Identities=17% Similarity=0.262 Sum_probs=150.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEE-CCCCCEEEEEeCCCeEEEEeCCCCe--EE--------
Q 004203 80 ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAF-SPDGKTLASTHGDHTVKIIDCQTGS--CL-------- 142 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~Vtslaf-SPDG~~LaSgS~DgtVrVWDl~tg~--~l-------- 142 (768)
.+..++|++.|.+|++|+.... ++..|+..|.|+++ -++..++|+|+-|+.|.+||++++. .+
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 5678999999999999998755 57899999999999 8899999999999999999999872 22
Q ss_pred EEEe-cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc
Q 004203 143 KVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRY 219 (768)
Q Consensus 143 ~~l~-gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl 219 (768)
..+. |+...|++++.++ .+..|++|+..+.|++||-++++.+.. .+|...|..+..++||..+++++ |+.|++||+
T Consensus 164 ~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred ccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 2223 8889999999999 889999999999999999999876555 57999999999999999999888 555999999
Q ss_pred CCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
....+.. .+..|...|+++..+|+-..+.++++
T Consensus 243 gqQrCl~---T~~vH~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 243 GQQRCLA---TYIVHKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred cccceee---eEEeccCceEEEeeCCCcceEEecCC
Confidence 9888754 67789999999999999988887776
No 104
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5.4e-14 Score=153.76 Aligned_cols=200 Identities=17% Similarity=0.155 Sum_probs=161.7
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC---------CC
Q 004203 73 IFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---------TG 139 (768)
Q Consensus 73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~---------tg 139 (768)
...+....+..|+.+...+.|.+|.+.++. +..|-..|+++.|+-||.+|++||.||.|.+|++- +-
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~ 164 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV 164 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence 334455667778888799999999999994 56899999999999999999999999999999762 23
Q ss_pred eEEEEEecCCCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEE
Q 004203 140 SCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYI 216 (768)
Q Consensus 140 ~~l~~l~gH~g~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~I 216 (768)
+++..|..|+-+|+++...+ + ..++++++.|.++++||+..|..+.++..+..+.+++.+|-+..+++|+. |+|.+
T Consensus 165 ~p~~~f~~HtlsITDl~ig~-Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 165 KPLHIFSDHTLSITDLQIGS-GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred cceeeeccCcceeEEEEecC-CCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEe
Confidence 57789999999999998877 4 35899999999999999999999999999999999999999999999985 55877
Q ss_pred EEcCCCcc-------------ccCCeEeecCCC--CeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCC
Q 004203 217 WRYNMREE-------------TSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG 273 (768)
Q Consensus 217 WDl~t~~~-------------~~~~~~l~~h~~--~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G 273 (768)
.++.+... ......+.+|.. .|++++.+-||..|+++.. +||+.+....+++.+..|
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg 320 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG 320 (476)
T ss_pred eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc
Confidence 77654320 011234556766 9999999999997766654 788776666666654444
No 105
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=6.8e-14 Score=147.07 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=142.2
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC---CCC-----e
Q 004203 73 IFEAGRDARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC---QTG-----S 140 (768)
Q Consensus 73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~----gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl---~tg-----~ 140 (768)
+-....++...|++++.|..|.+|+++ +++. .....-+.++.||+|++|++++..-.|++|.. +.| .
T Consensus 191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~ 269 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVK 269 (420)
T ss_pred EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhh
Confidence 335566788999999999999999998 4333 33445678999999999999999999999986 233 2
Q ss_pred EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC----c---EEEEe-----cCCCCeEEEEEcCCCCEEEE
Q 004203 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA----E---CIGSR-----DFYRPIASIAFHASGELLAV 208 (768)
Q Consensus 141 ~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg----~---~i~~l-----~h~~~V~svafSPDG~~Lat 208 (768)
.+..++||...|..++|++ +...+++.+.||+++|||+.-. + .++.. ...+.-..++.+|.|+.|+.
T Consensus 270 rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred hhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence 4567899999999999999 9999999999999999998631 1 22221 11233348999999999999
Q ss_pred EECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 209 ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 209 gSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+.+..++++..++++.. +.....|...|.+++|+++|+++++.+.
T Consensus 349 s~gs~l~~~~se~g~~~--~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 349 SFGSDLKVFASEDGKDY--PELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred ecCCceEEEEcccCccc--hhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 98888999999887653 2334458899999999999998777664
No 106
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=3.6e-14 Score=154.37 Aligned_cols=174 Identities=18% Similarity=0.228 Sum_probs=147.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-------C------------------CCCCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-------P------------------LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKI 133 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-------~------------------L~gH~~~VtslafSPD-G~~LaSgS~DgtVrV 133 (768)
.+.+++.|..|-.|.+||+... + -.+|+..|.+++|+.+ ...||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4568999999999999998732 1 1269999999999984 468899999999999
Q ss_pred EeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCeEEEEEcCCCCEEEE-EEC
Q 004203 134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRDFYRPIASIAFHASGELLAV-ASG 211 (768)
Q Consensus 134 WDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~l~h~~~V~svafSPDG~~Lat-gSd 211 (768)
||+.+|++..++..|++.|.++.|+|....+|++|+.|++|.|.|.+... .-..+...+.|..++|+|.....+. +++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 99999999999999999999999999999999999999999999999533 3345778899999999998875444 444
Q ss_pred -CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 212 -HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 212 -d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
|.++-+|+|.... ....+..|...|.++++++.-..++++++
T Consensus 351 dG~v~~~D~R~~~~--~vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGK--PVWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred CceEEeeecCCCCC--ceeEEEeccCCcceEEecCCCCcceeecc
Confidence 5599999998864 34577889999999999999988888765
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=5.6e-14 Score=147.35 Aligned_cols=183 Identities=17% Similarity=0.244 Sum_probs=154.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC------CC----------
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC------QT---------- 138 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl------~t---------- 138 (768)
.....+.+.+.|.+-++|.++++ ++.||.+.|+++.|++.+.++++++.|++-.||.. ..
T Consensus 158 ~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE 237 (481)
T KOG0300|consen 158 STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE 237 (481)
T ss_pred cCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence 34556678899999999999987 68899999999999999999999999999999962 00
Q ss_pred --------------------C----eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCC
Q 004203 139 --------------------G----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRP 193 (768)
Q Consensus 139 --------------------g----~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~ 193 (768)
+ .++..|++|.+.|.+..|-. +++.+++++.|.+..+||+++|+.+..+ +|...
T Consensus 238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E 316 (481)
T KOG0300|consen 238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSE 316 (481)
T ss_pred hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchh
Confidence 0 13567789999999999998 9999999999999999999999999885 68889
Q ss_pred eEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcc
Q 004203 194 IASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS 265 (768)
Q Consensus 194 V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~ 265 (768)
.+-++-+|..+++++.+.|. .++||++.. +.....+.+|...|+++.|.-|.+ +++++. +|++++-+.+
T Consensus 317 LtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 317 LTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred ccccccCCcceEEEEeccCceeEeccchhh--cceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCc
Confidence 99999999999999999666 999999843 334456788999999999999887 565543 8888865543
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=8.8e-14 Score=161.61 Aligned_cols=189 Identities=16% Similarity=0.208 Sum_probs=154.3
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 004203 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (768)
Q Consensus 71 ~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~ 146 (768)
+....+.......+++++.++.|+++....++ +...+-++.+++|+-+|+++|.||.|..|++.++.+....+.++
T Consensus 56 g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr 135 (933)
T KOG1274|consen 56 GELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR 135 (933)
T ss_pred CceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec
Confidence 34455555566799999999999999988663 44567789999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCCeEEEEEcCCC-CEEEEEECCeEEE
Q 004203 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHASG-ELLAVASGHKLYI 216 (768)
Q Consensus 147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---------h~~~V~svafSPDG-~~LatgSdd~I~I 216 (768)
+|.++|.++.|+| .+++||+.+-||.|++||+.++.+..++. ....+..++|+|+| ++++.+.++.|++
T Consensus 136 gh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 136 GHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV 214 (933)
T ss_pred ccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence 9999999999999 99999999999999999999998766642 13467789999995 5666666888999
Q ss_pred EEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004203 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS 261 (768)
Q Consensus 217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~s 261 (768)
|+.......-.. ....+...+..++|+|+|+||+++.. +||+++
T Consensus 215 y~r~~we~~f~L-r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 215 YSRKGWELQFKL-RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EccCCceeheee-cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 998887653311 11123344999999999999998775 777763
No 109
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.55 E-value=6.7e-14 Score=165.22 Aligned_cols=238 Identities=17% Similarity=0.145 Sum_probs=172.8
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCC------C----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeE
Q 004203 74 FEAGRDARRGLASWVEAESLHHLRPKY------C----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTV 131 (768)
Q Consensus 74 ~~a~~d~g~~LvSgs~DgsIrlWd~~t------~----------------~L~gH~~~VtslafSPDG~~LaSgS~DgtV 131 (768)
.+-...++.+|++|++|+.|.+|.... + .|.+|...|.+++|+||+.+|++++.|++|
T Consensus 74 CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 74 CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSV 153 (942)
T ss_pred EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceE
Confidence 333557899999999999999999872 0 367899999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-------CCCCeEEEEEcCCCC
Q 004203 132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------FYRPIASIAFHASGE 204 (768)
Q Consensus 132 rVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-------h~~~V~svafSPDG~ 204 (768)
.|||..+.+.++.+++|.+.|-.+.|.| -|++||+-+.|++|++|++.+....+.+. ....+..+.|+|||+
T Consensus 154 iiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred EEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence 9999999999999999999999999999 99999999999999999987765555532 234678899999999
Q ss_pred EEEEEE--CC-e--EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEee-CCcCC-CCcceeEeecCCcccC
Q 004203 205 LLAVAS--GH-K--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEV-NDLDS-SESSLTLATSPGYWRY 277 (768)
Q Consensus 205 ~LatgS--dd-~--I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~sv-wdl~s-g~~~~~L~t~~G~~~~ 277 (768)
+|++.. .+ + +.|.+-.+-+.. ..+.+|..++..+.|+|.= +-... +.... .+....+....+
T Consensus 233 ~las~nA~n~~~~~~~IieR~tWk~~---~~LvGH~~p~evvrFnP~l----fe~~~~ng~~~~~~~~y~i~AvgS---- 301 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERGTWKVD---KDLVGHSAPVEVVRFNPKL----FERNNKNGTSTQPNCYYCIAAVGS---- 301 (942)
T ss_pred eecchhhccCCcceeEEEecCCceee---eeeecCCCceEEEEeChHH----hccccccCCccCCCcceEEEEEec----
Confidence 999886 22 2 888887666543 3688999999999999930 00000 00000 000011111111
Q ss_pred CCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCC
Q 004203 278 PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH 325 (768)
Q Consensus 278 p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~ 325 (768)
....+.+|........-+. .......+.-.+|+|||-.|.+--.|.
T Consensus 302 qDrSlSVW~T~~~RPl~vi--~~lf~~SI~DmsWspdG~~LfacS~DG 347 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVI--HNLFNKSIVDMSWSPDGFSLFACSLDG 347 (942)
T ss_pred CCccEEEEecCCCCchhhh--hhhhcCceeeeeEcCCCCeEEEEecCC
Confidence 1245777775443333322 223344566788999988777654433
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.55 E-value=2.8e-13 Score=148.07 Aligned_cols=180 Identities=17% Similarity=0.146 Sum_probs=145.8
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 004203 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (768)
Q Consensus 71 ~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~ 146 (768)
..+..+.+.++++|+++..|..|.+|+.++. .+++|.+.|.+++|-..-..|++++.|+.|++|+++....+.++.
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 3566777889999999999999999999987 478999999999999888899999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (768)
Q Consensus 147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~ 225 (768)
||...|..+.-.. -++.+-.|++|++++||++.....+...++.+.+.|++|-.+ .++++|++++ |.+|++.+.+..
T Consensus 284 GHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 284 GHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred CCccceeeechhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence 9999999888766 455555567999999999965555555678889999999855 5677888655 999999887642
Q ss_pred cCCeEeec-----------CCCCeEEEEEccCCCeEEEEE
Q 004203 226 SSPRIVLR-----------TRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 226 ~~~~~l~~-----------h~~~V~sVaFSPDG~~LlaS~ 254 (768)
- ..... +..+|++++..|....+++++
T Consensus 362 f--~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 362 F--TSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred e--EeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 2 11111 123899999999888555444
No 111
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.5e-12 Score=147.38 Aligned_cols=224 Identities=13% Similarity=0.134 Sum_probs=151.9
Q ss_pred CeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCE
Q 004203 91 ESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164 (768)
Q Consensus 91 gsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~l 164 (768)
..|.+||.... ++..|...+...+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+....|+| |++.
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-DG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-DGRK 259 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-CCCE
Confidence 36888887654 36678889999999999999988764 578999999988753 4455666777889999 7766
Q ss_pred EE-EEeCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEeecCCCC
Q 004203 165 IA-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRS 237 (768)
Q Consensus 165 La-SgS~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~~~~~~~~~l~~h~~~ 237 (768)
|+ +.+.++ .|++||+.+++......+........|+|||+.|++.++. .|++||+..+... .+..+...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----RISFGGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE----EeecCCCc
Confidence 54 556555 4888899988876655566666789999999999988843 2888898765432 23334455
Q ss_pred eEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCE
Q 004203 238 LRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER 317 (768)
Q Consensus 238 V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~r 317 (768)
+....|+|||++|++...... . ..+.+++..... ..+.... .....|.|+|||+.
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~----~----------------~~i~~~d~~~~~-~~~lt~~----~~~~~p~~spDG~~ 390 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGG----Q----------------FSIGVMKPDGSG-ERILTSG----FLVEGPTWAPNGRV 390 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCC----c----------------eEEEEEECCCCc-eEeccCC----CCCCCCeECCCCCE
Confidence 677899999999887653111 0 022333321111 1111110 11336899999999
Q ss_pred EEEEecCCCCC--cceEEeccCCCceeeee
Q 004203 318 ISLQHTEHDSG--ATRTQQSLRSSSSVRLL 345 (768)
Q Consensus 318 Iv~~~~d~~~G--s~~~~~~~~ss~~~rl~ 345 (768)
|++...+.... ..++..++++...++++
T Consensus 391 i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 391 IMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 99986654332 46777777666555443
No 112
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.55 E-value=2.8e-13 Score=143.08 Aligned_cols=142 Identities=27% Similarity=0.441 Sum_probs=120.2
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCC----CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203 79 DARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDG----KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~VtslafSPDG----~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s 154 (768)
.....|+.+-.|+-+++...... ..|.+....++|+-|- .++|.++.-|.|+|.|+.++++...+.+|++.|+.
T Consensus 63 ~~rvtiy~c~~d~~ir~lq~y~D--~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINe 140 (385)
T KOG1034|consen 63 GNRVTIYECPGDGGIRLLQSYAD--EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINE 140 (385)
T ss_pred CcEEEEEEECCccceeeeeeccC--CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchh
Confidence 34445556666665555554322 2588889999998753 47889999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec----CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR 222 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~----h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~ 222 (768)
+.|+|+..++++++|.|.+||+||+++..|+..++ |.+.|.++.|+++|.+|++++ |..|++|++...
T Consensus 141 ik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 141 IKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred hhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 99999888999999999999999999999999874 899999999999999999988 555999999854
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.6e-12 Score=136.60 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=135.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 79 DARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~~L---~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
..+..|+..++||++++||.....+ -.|..++.+++|.+ ...+++|+-||.|+++|+.+++.. .+..|...|+++
T Consensus 23 ~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci 100 (323)
T KOG1036|consen 23 PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCI 100 (323)
T ss_pred CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEE
Confidence 4566777777999999999987643 36999999999995 678899999999999999998754 455699999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecC
Q 004203 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRT 234 (768)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h 234 (768)
..++ ....+++|+.|++|++||.+.......+.....|.++.. .|..|++|+.+ ++.+||+++..... ......-
T Consensus 101 ~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~-q~reS~l 176 (323)
T KOG1036|consen 101 EYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF-QRRESSL 176 (323)
T ss_pred Eeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh-hhccccc
Confidence 9999 888999999999999999998767777777778887765 47788887754 59999999876532 1112233
Q ss_pred CCCeEEEEEccCCCeEEEEE
Q 004203 235 RRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 235 ~~~V~sVaFSPDG~~LlaS~ 254 (768)
+-.+++|++-|++.-+++++
T Consensus 177 kyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 177 KYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred eeEEEEEEEecCCCceEEEe
Confidence 56789999999776555544
No 114
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=5e-13 Score=135.07 Aligned_cols=178 Identities=24% Similarity=0.355 Sum_probs=146.7
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCC--CC-------CCCCCCCCeEEEEECCC----CCEEEEEeC-CCeEEEEeCCC
Q 004203 73 IFEAGRDARRGLASWVEAESLHHLRPK--YC-------PLSPPPRSTIAAAFSPD----GKTLASTHG-DHTVKIIDCQT 138 (768)
Q Consensus 73 l~~a~~d~g~~LvSgs~DgsIrlWd~~--t~-------~L~gH~~~VtslafSPD----G~~LaSgS~-DgtVrVWDl~t 138 (768)
...+.+..+..|+++++|+.|++.... ++ +|.-|.+.|.+++|-.| |.+|++++. |..|++-|..+
T Consensus 93 yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 93 YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 344555678899999999999887554 44 35568999999999753 456777654 88899999999
Q ss_pred CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---C-----CCCeEEEEEcCCCCEEEEEE
Q 004203 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---F-----YRPIASIAFHASGELLAVAS 210 (768)
Q Consensus 139 g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---h-----~~~V~svafSPDG~~LatgS 210 (768)
|+....+.||++-|..+ ++- ++..+++|+.|++|++||++-..++.+++ | ...|.+++..|.|++|++|-
T Consensus 173 g~~~~a~sghtghilal-ysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 173 GQGFHALSGHTGHILAL-YSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred CCcceeecCCcccEEEE-EEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 99999999999998764 222 78999999999999999999999988864 2 24789999999999999998
Q ss_pred CCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 211 GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 211 dd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.+. ..+||++.+..++ .+..|...|+++.|+|...|+++.+-
T Consensus 251 ~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGAHYLLTCSY 293 (350)
T ss_pred CCCceEEEEeeCCceee---eeCCCccceeEEEeCCCceEEEEecc
Confidence 665 9999999998755 67789999999999999888776654
No 115
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.1e-12 Score=138.28 Aligned_cols=175 Identities=16% Similarity=0.201 Sum_probs=137.8
Q ss_pred CCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCE
Q 004203 89 EAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164 (768)
Q Consensus 89 ~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~l 164 (768)
.|.+|+..++.+. -|.||+..|++++.+|-+..|++++.|++|++||++..++...+.-...++ ++|.| .|-+
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp-~GLi 154 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDP-EGLI 154 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECC-CCcE
Confidence 4788999999876 488999999999999988999999999999999999988888776544444 69999 9999
Q ss_pred EEEEeCCCeEEEEECCCC--cEEEEec----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCC--
Q 004203 165 IASGSLDHEVRLWNASTA--ECIGSRD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTR-- 235 (768)
Q Consensus 165 LaSgS~DgtVrLWDl~sg--~~i~~l~----h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~-- 235 (768)
+|.+.....|+|||+++- .+..++. .....+.+.|+|||+.|+.++++. +++.|.-++.... .+..+.
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~---tfs~~~~~ 231 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS---TFSGYPNA 231 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee---eEeeccCC
Confidence 999988889999999963 3444443 345789999999999988888655 9999998887543 333332
Q ss_pred -CCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEe
Q 004203 236 -RSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA 269 (768)
Q Consensus 236 -~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~ 269 (768)
.---+..|+||+++++.++. +|++.++.....+.
T Consensus 232 ~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred CCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 22367889999998887765 77776554443333
No 116
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.54 E-value=1.3e-13 Score=151.86 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=128.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCe-E
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS-C 141 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----------------~L~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg~-~ 141 (768)
.+..|+..+-.-..+++|-... ..+||...++|.+|+|+ ...|++++.|+++||||++.-+ .
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 4445555555556666665421 35799999999999994 5688999999999999997654 3
Q ss_pred EEEEe-----cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE--EE--EecCCC--CeEEEEEcCCCCEEEEEE
Q 004203 142 LKVLH-----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--IG--SRDFYR--PIASIAFHASGELLAVAS 210 (768)
Q Consensus 142 l~~l~-----gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~--i~--~l~h~~--~V~svafSPDG~~LatgS 210 (768)
+.+|+ +..-.+..++|+| ++++||.|+.||.|.+||..+... .. .-+|.. .|+++.|++||++|++-+
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 34443 2233578899999 999999999999999999865322 11 124665 899999999999999988
Q ss_pred -CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 211 -GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 211 -dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
|+.+++||++..+.......-......-+.++|||+.+.|+++.+
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 566999999987753311122223456678999999997777665
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=5.4e-14 Score=149.88 Aligned_cols=213 Identities=13% Similarity=0.120 Sum_probs=157.5
Q ss_pred CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------------------
Q 004203 82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------------------- 138 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t------------------- 138 (768)
..+++|+.||.|++||+... .+..|.+.|.++++.. ..+++++.|.+|+.|-++.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 46889999999999999864 6889999999999986 7788999999999997421
Q ss_pred --------Ce-----------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEE
Q 004203 139 --------GS-----------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAF 199 (768)
Q Consensus 139 --------g~-----------~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svaf 199 (768)
|+ ++..+.--...|.++.|+|....+|+++..|+.|.|||++++.++...-....-+.++|
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Isw 237 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICW 237 (433)
T ss_pred ccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceec
Confidence 11 12222223456788999997788999999999999999999999888777777789999
Q ss_pred cCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCC
Q 004203 200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYP 278 (768)
Q Consensus 200 SPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p 278 (768)
+|.+-.+++++.|. ++.+|++.... ......+|...|.+|.|||.|+-+++++-+..++ .+....++..
T Consensus 238 nPeafnF~~a~ED~nlY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR------If~~~~~~SR-- 307 (433)
T KOG0268|consen 238 NPEAFNFVAANEDHNLYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR------IFPVNHGHSR-- 307 (433)
T ss_pred Cccccceeeccccccceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEE------EeecCCCcch--
Confidence 99777777777655 99999987765 3345677899999999999999888776444333 1222222211
Q ss_pred CCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203 279 PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT 323 (768)
Q Consensus 279 ~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~ 323 (768)
.+. +.. ....++.+.||-|.++|+.+.+
T Consensus 308 --diY----------htk-----RMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 308 --DIY----------HTK-----RMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred --hhh----------hHh-----hhheeeEEEEeccccEEEecCC
Confidence 111 111 1123457899999999997443
No 118
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.4e-12 Score=147.55 Aligned_cols=217 Identities=15% Similarity=0.132 Sum_probs=140.7
Q ss_pred CCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeE--EEEEecCCCCcEEEEEccCC
Q 004203 90 AESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLN 161 (768)
Q Consensus 90 DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~--l~~l~gH~g~V~sVafSP~d 161 (768)
+..|.+||.... .+..|...+....|||||++|+..+.+ ..|++||+++++. +..+.+| ...++|+| |
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-D 258 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-D 258 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-C
Confidence 468999998654 356788899999999999999988754 4799999998864 3333443 34689999 8
Q ss_pred CCEEEEEe-CCCe--EEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEeecCCC
Q 004203 162 PTIIASGS-LDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRR 236 (768)
Q Consensus 162 g~lLaSgS-~Dgt--VrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~~~l~~h~~ 236 (768)
++.|++++ .++. |++||+.+++......+...+....|+|||+.|++.++ +..+||+++...... ....+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA---SLVGGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEecCCC
Confidence 88777654 6775 55567777776665566667888999999999888774 447777765433211 1223333
Q ss_pred CeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCC
Q 004203 237 SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE 316 (768)
Q Consensus 237 ~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~ 316 (768)
..+.|+|||+++++.+.. . +..++..++....+... .....|.|+|||+
T Consensus 336 --~~~~~SpDG~~ia~~~~~-~-----------------------i~~~Dl~~g~~~~lt~~-----~~~~~~~~sPdG~ 384 (429)
T PRK01742 336 --YSAQISADGKTLVMINGD-N-----------------------VVKQDLTSGSTEVLSST-----FLDESPSISPNGI 384 (429)
T ss_pred --CCccCCCCCCEEEEEcCC-C-----------------------EEEEECCCCCeEEecCC-----CCCCCceECCCCC
Confidence 457899999988876541 0 11111111111111000 0112588999999
Q ss_pred EEEEEecCCCCCcceEEeccCCCceeeee
Q 004203 317 RISLQHTEHDSGATRTQQSLRSSSSVRLL 345 (768)
Q Consensus 317 rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~ 345 (768)
.|++...+.. ...+.....++...++|+
T Consensus 385 ~i~~~s~~g~-~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 385 MIIYSSTQGL-GKVLQLVSADGRFKARLP 412 (429)
T ss_pred EEEEEEcCCC-ceEEEEEECCCCceEEcc
Confidence 9999765332 234555555666555454
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.52 E-value=2.4e-13 Score=141.75 Aligned_cols=202 Identities=16% Similarity=0.246 Sum_probs=155.0
Q ss_pred CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe------------EE---EEEecCCCCcEEEEEccCCCCEEEE
Q 004203 104 SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS------------CL---KVLHGHRRTPWVVRFHPLNPTIIAS 167 (768)
Q Consensus 104 ~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~------------~l---~~l~gH~g~V~sVafSP~dg~lLaS 167 (768)
..|.+.|+++...+ .|+++++|+.||.|.+||++... ++ .--.+|+-.|..+.|.|.|...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46999999999999 89999999999999999997642 11 0013677889999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCC---EEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEE
Q 004203 168 GSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE---LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHF 243 (768)
Q Consensus 168 gS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~---~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaF 243 (768)
++.|.++++||..+-+....+..++.|++-+|+|-.. ++|+|.++. |++.|+.++.... .+.+|...|.+|.|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH---~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH---TLSGHRDGVLAVEW 196 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee---eeccccCceEEEEe
Confidence 9999999999999999999999999999999999543 677777665 9999999998654 78899999999999
Q ss_pred ccCCCeEEEEEe------eCCcCCCC-cceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCC
Q 004203 244 HPHAAPLLLTAE------VNDLDSSE-SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE 316 (768)
Q Consensus 244 SPDG~~LlaS~s------vwdl~sg~-~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~ 316 (768)
+|...+++++++ .||++... +-..+.-+++ +++ +.+. .-......+...+|+.||.
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~--k~~-p~~~--------------~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT--KRP-PILK--------------TNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccC--ccC-cccc--------------ccccccceeeeeeecccch
Confidence 999999999876 78887431 2222222221 111 1111 1122233455789999999
Q ss_pred EEEEEecCC
Q 004203 317 RISLQHTEH 325 (768)
Q Consensus 317 rIv~~~~d~ 325 (768)
.+....+++
T Consensus 260 ~l~~~gtd~ 268 (397)
T KOG4283|consen 260 YLASCGTDD 268 (397)
T ss_pred hhhhccCcc
Confidence 888754444
No 120
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.2e-12 Score=143.77 Aligned_cols=223 Identities=14% Similarity=0.111 Sum_probs=148.5
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (768)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL 165 (768)
.|.+||.+.. .+..+...+...+|||||+.|+..+. +..|++||+.+++..... ...+.+..+.|+| |++.|
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SP-DG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSP-DGSKL 257 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECC-CCCEE
Confidence 6888887644 35567778999999999999987653 468999999988643322 2233345689999 88777
Q ss_pred EEE-eCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC--e--EEEEEcCCCccccCCeEeecCCCCe
Q 004203 166 ASG-SLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL 238 (768)
Q Consensus 166 aSg-S~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd--~--I~IWDl~t~~~~~~~~~l~~h~~~V 238 (768)
+.. +.++ .|++||+++++..........+....|+|||+.|++.++. . |+++|+.+++.. .+.......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~~~~~~ 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITWEGSQN 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----EeecCCCCc
Confidence 654 4454 5999999998877666666677889999999999888853 2 666676655432 233344456
Q ss_pred EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (768)
Q Consensus 239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI 318 (768)
....|+|||+++++....... ..+.+++..++....+... .....|.|||||+.|
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~--------------------~~I~~~dl~~g~~~~Lt~~-----~~~~~p~~SpDG~~i 388 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQ--------------------QHIAKQDLATGGVQVLTDT-----FLDETPSIAPNGTMV 388 (429)
T ss_pred cCEEECCCCCEEEEEEccCCC--------------------ceEEEEECCCCCeEEeCCC-----CCCCCceECCCCCEE
Confidence 678999999998876642210 0133333322221111110 112368999999999
Q ss_pred EEEecCCCCCcceEEeccCCCceeeeec
Q 004203 319 SLQHTEHDSGATRTQQSLRSSSSVRLLT 346 (768)
Q Consensus 319 v~~~~d~~~Gs~~~~~~~~ss~~~rl~~ 346 (768)
++...+.. ...+...+.++...++|+.
T Consensus 389 ~~~s~~~~-~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 389 IYSSSQGM-GSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred EEEEcCCC-ceEEEEEECCCCCeEECcc
Confidence 99866443 4566777777777665554
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=7.2e-13 Score=139.41 Aligned_cols=146 Identities=23% Similarity=0.344 Sum_probs=124.3
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCC--EEEEEeCCCeEEEEECC
Q 004203 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT--IIASGSLDHEVRLWNAS 180 (768)
Q Consensus 103 L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~--lLaSgS~DgtVrLWDl~ 180 (768)
+..|.++|++++.+ |.++++||.|-+|+|||+.+...+..+..|.+.|+++.|.+ .-. .|++|+.||.|.+|+..
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 56899999999997 99999999999999999999999999999999999999998 443 89999999999999999
Q ss_pred CCcEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 181 TAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 181 sg~~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
..+++.++. |.+.|+.++.+|.|++-.+.+ |+.+++||+-.++... ...-...-..|.|+|.|.+++..+.
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~----v~~L~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF----VLNLKNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce----eeccCCcceeeEEcCCCCEEEEEec
Confidence 999988875 888999999999999766555 5559999998886532 2223334455999999998877765
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.50 E-value=4.1e-13 Score=152.30 Aligned_cols=163 Identities=21% Similarity=0.239 Sum_probs=136.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~--~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVaf 157 (768)
....++|++.|.++++|....+ .+.+|+..|.++++-|++ .++|||.|.+||+|.- ++.+++|.||+..|+.+++
T Consensus 111 ~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v 187 (745)
T KOG0301|consen 111 EDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV 187 (745)
T ss_pred CcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence 4444899999999999998766 689999999999999988 8899999999999985 7889999999999999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecC-
Q 004203 158 HPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRT- 234 (768)
Q Consensus 158 SP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h- 234 (768)
-+ +..|+|++.||.|++||+ +|+++.. .+|...++++....++..+++++.| +++||+.. +..+ ...+
T Consensus 188 l~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q----~I~lP 258 (745)
T KOG0301|consen 188 LD--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQ----VITLP 258 (745)
T ss_pred ec--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEE----EEecC
Confidence 87 556899999999999999 5666554 6899999999977777888888854 59999977 3222 3334
Q ss_pred CCCeEEEEEccCCCeEEEEEe
Q 004203 235 RRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 235 ~~~V~sVaFSPDG~~LlaS~s 255 (768)
...|+++.+-++|. |+++++
T Consensus 259 ttsiWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 259 TTSIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred ccceEEEEEeeCCC-EEEecc
Confidence 44899999999999 666665
No 123
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1e-13 Score=164.28 Aligned_cols=182 Identities=19% Similarity=0.223 Sum_probs=142.2
Q ss_pred CEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEe--cC
Q 004203 82 RGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVLH--GH 148 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~----------~L~gH~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l~--gH 148 (768)
+.|+.|.+||.|.+||...- ++..|++.|..++|++.+ ++||+|++||.|.|||+..-+.-..+. ..
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 46888999999999998751 467899999999999955 599999999999999998755433331 23
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---CCeEEEEEcCCCC-EEEEEECC-e---EEEEEcC
Q 004203 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGE-LLAVASGH-K---LYIWRYN 220 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~---~~V~svafSPDG~-~LatgSdd-~---I~IWDl~ 220 (768)
...|.+++|+.....+|++++.+|.+.|||++..+.+..+... ..+..++|+|++. .|++++++ . |.+||+|
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 4679999999878889999999999999999998777665432 3588999999875 67777743 3 9999999
Q ss_pred CCccccCCeEeecCCCCeEEEEEccCCCeEEEEE-e-----eCCcCCCCcc
Q 004203 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA-E-----VNDLDSSESS 265 (768)
Q Consensus 221 t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~-s-----vwdl~sg~~~ 265 (768)
...... ..+..|...|.++.|++.+..++.++ . .|+..+++-.
T Consensus 241 ~assP~--k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 241 FASSPL--KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred ccCCch--hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 876522 34568999999999999885455544 4 5555554433
No 124
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6.5e-12 Score=142.18 Aligned_cols=222 Identities=15% Similarity=0.142 Sum_probs=146.8
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (768)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL 165 (768)
.|.+||.... ++..+...+.+.+|+|||+.|+..+. +..|++||+.+++... +....+....+.|+| |++.+
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp-DG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP-DGRRL 262 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC-CCCEE
Confidence 5888987654 46677888999999999999998874 3579999999887543 333444455789999 77655
Q ss_pred E-EEeCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC--e--EEEEEcCCCccccCCeEeecCCCCe
Q 004203 166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL 238 (768)
Q Consensus 166 a-SgS~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd--~--I~IWDl~t~~~~~~~~~l~~h~~~V 238 (768)
+ +.+.++ .|++||+.+++......+.......+|+|||+.|++.++. . |+++|+.+++... +.......
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----lt~~g~~~ 338 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----LTFQGNYN 338 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----eecCCCCc
Confidence 4 556655 6999999998876655555556678999999999988842 3 7777776654322 22233445
Q ss_pred EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (768)
Q Consensus 239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI 318 (768)
..++|+|||++|+.+.... +. ..+.+++..++....+.... ....|.|++||+.|
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~----~~----------------~~I~v~d~~~g~~~~Lt~~~-----~~~~p~~spdG~~i 393 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSG----GQ----------------YRIAVMDLSTGSVRTLTPGS-----LDESPSFAPNGSMV 393 (433)
T ss_pred cCEEECCCCCEEEEEECCC----Cc----------------eeEEEEECCCCCeEECCCCC-----CCCCceECCCCCEE
Confidence 5789999999988765311 00 02333443332222111110 11257999999999
Q ss_pred EEEecCCCCCcceEEeccCCCceeeee
Q 004203 319 SLQHTEHDSGATRTQQSLRSSSSVRLL 345 (768)
Q Consensus 319 v~~~~d~~~Gs~~~~~~~~ss~~~rl~ 345 (768)
++..++.. .+.++..+.++....+++
T Consensus 394 ~~~s~~~g-~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 394 LYATREGG-RGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred EEEEecCC-ceEEEEEECCCCceEEcc
Confidence 99866532 345666666665555443
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.48 E-value=3.3e-13 Score=153.10 Aligned_cols=171 Identities=16% Similarity=0.241 Sum_probs=145.4
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s 154 (768)
.++.+++.++.|+.|.+|..... .|++|+..|.++....++. +++||+|.++++|-. +++...+++|+..|+.
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence 46778999999999999998765 6899999999999888887 999999999999986 5667779999999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeec
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR 233 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~ 233 (768)
+..-| +. .+++|+.|++|++|.- ++.++++ +|.+.|..+++-+++.+|-++.|+.|++|++ +++.. ....+
T Consensus 146 v~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l---~~~~g 217 (745)
T KOG0301|consen 146 VASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVL---LEMHG 217 (745)
T ss_pred eeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCcee---eeeec
Confidence 99988 44 8999999999999986 6677775 5999999999999988777777778999999 44443 36889
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203 234 TRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (768)
Q Consensus 234 h~~~V~sVaFSPDG~~LlaS~svwdl~ 260 (768)
|..-|+++....++..+++++++..++
T Consensus 218 htn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred cceEEEEEEecCCCCeEEEecCCceEE
Confidence 999999999777777788888744444
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.48 E-value=6.6e-13 Score=145.91 Aligned_cols=173 Identities=13% Similarity=0.138 Sum_probs=141.7
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-------CC--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE--EEEE
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC-------PL--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL 145 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~-------~L--~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l 145 (768)
.+...+.+++|+. +-|++||+... +| ......|.++...|||+.|++|+.-.++.|||+..... ...+
T Consensus 427 IS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikael 505 (705)
T KOG0639|consen 427 ISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL 505 (705)
T ss_pred ecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhc
Confidence 4556677777754 57999999743 12 23455699999999999999999999999999976542 2344
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCc
Q 004203 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMRE 223 (768)
Q Consensus 146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~ 223 (768)
....-..+.++.+| |.++++++..||.|.|||+.+...++.+ +|.+.+.|+..++||..|-+|+ |+.|+.||++.+.
T Consensus 506 tssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 506 TSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred CCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence 44445678899999 9999999999999999999999988887 4999999999999999999999 6779999999987
Q ss_pred cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
... .......|.++-.+|++.+++++..
T Consensus 585 qlq----qhdF~SQIfSLg~cP~~dWlavGMe 612 (705)
T KOG0639|consen 585 QLQ----QHDFSSQIFSLGYCPTGDWLAVGME 612 (705)
T ss_pred hhh----hhhhhhhheecccCCCccceeeecc
Confidence 644 2234678999999999999988765
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.7e-12 Score=151.16 Aligned_cols=171 Identities=19% Similarity=0.283 Sum_probs=140.7
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC--
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-- 148 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-- 148 (768)
.+...++..++.|++|-.|++.+.... .+.+|+.+|.++.|+|.+++||+.+.||+|++||++++.+..++.+-
T Consensus 102 ~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k 181 (933)
T KOG1274|consen 102 LAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK 181 (933)
T ss_pred EEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc
Confidence 334557889999999999999998865 58899999999999999999999999999999999999877666532
Q ss_pred ------CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCeEEEEEcCCCCEEEEEE-CCeEEEEE
Q 004203 149 ------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVAS-GHKLYIWR 218 (768)
Q Consensus 149 ------~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---h~~~V~svafSPDG~~LatgS-dd~I~IWD 218 (768)
...+..++|+| ++..++....|++|++|+..+++.+..+. +...+..+.|+|+|++||+++ ++.|.|||
T Consensus 182 ~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 182 DNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred cccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 23456689999 66667777788999999999998877753 444599999999999999999 56699999
Q ss_pred cCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 219 l~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
.++.+. ......|.+++|.|++..+-..
T Consensus 261 v~t~~~-------~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 261 VDTHER-------HEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred cccchh-------ccccceeEEEecCCCCCeeEEE
Confidence 988321 2346789999999998855443
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=6e-13 Score=136.07 Aligned_cols=182 Identities=16% Similarity=0.190 Sum_probs=144.7
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCC---eEEEEEec
Q 004203 79 DARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG---SCLKVLHG 147 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg---~~l~~l~g 147 (768)
..+..|++++.|++|.+|..+.++ ...|...|++++|.| -|-.|++++.||+|.|.++++. ...+....
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 357889999999999999998873 568999999999999 4568899999999999998764 23456678
Q ss_pred CCCCcEEEEEccCC--C-----------CEEEEEeCCCeEEEEECCCCcEE--EEe-cCCCCeEEEEEcCCC----CEEE
Q 004203 148 HRRTPWVVRFHPLN--P-----------TIIASGSLDHEVRLWNASTAECI--GSR-DFYRPIASIAFHASG----ELLA 207 (768)
Q Consensus 148 H~g~V~sVafSP~d--g-----------~lLaSgS~DgtVrLWDl~sg~~i--~~l-~h~~~V~svafSPDG----~~La 207 (768)
|.-.|++++|.|-. + +.|++|+.|+.|+||+..+++-+ .++ +|.+-|..++|.|.- ..|+
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 99999999999921 2 56999999999999999986432 223 588999999999964 3789
Q ss_pred EEEC-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203 208 VASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (768)
Q Consensus 208 tgSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~ 260 (768)
+++. +++.||..+......+...+......+..+.||..|..|+.++..+.+.
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence 9984 5599998875444443444555678899999999999888777655443
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.47 E-value=8.8e-12 Score=129.96 Aligned_cols=186 Identities=17% Similarity=0.166 Sum_probs=131.4
Q ss_pred EecCCCEEE-EEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCC-eEEEEeCCCCeEEEEEecCCCC
Q 004203 77 GRDARRGLA-SWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRT 151 (768)
Q Consensus 77 ~~d~g~~Lv-Sgs~DgsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~gH~g~ 151 (768)
...++..++ +...++.|++||+.+.+.. .+...+.+++|+|||+++++++.++ .+++||.++++....+.. ...
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~ 158 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQR 158 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCC
Confidence 334455554 4556899999999875321 2234578899999999999988875 577889998887665543 334
Q ss_pred cEEEEEccCCCCEEE-EEeCCCeEEEEECCCCcEEEEecCC------C--CeEEEEEcCCCCEEEEEE--CCeEEEEEcC
Q 004203 152 PWVVRFHPLNPTIIA-SGSLDHEVRLWNASTAECIGSRDFY------R--PIASIAFHASGELLAVAS--GHKLYIWRYN 220 (768)
Q Consensus 152 V~sVafSP~dg~lLa-SgS~DgtVrLWDl~sg~~i~~l~h~------~--~V~svafSPDG~~LatgS--dd~I~IWDl~ 220 (768)
+..+.|+| ++++++ ++..++.|++||+++++.+..+... . ....++|+|++++++++. ++.+.+||++
T Consensus 159 ~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 159 PRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred ccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 67789999 777664 5556999999999999876654321 1 234688999999866543 4569999998
Q ss_pred CCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCCcceeE
Q 004203 221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTL 268 (768)
Q Consensus 221 t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~~~~~L 268 (768)
+.+... ...+...+.++.|+|+|++|+++.. +||++.++....+
T Consensus 238 ~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 238 TYEVLD----YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCcEEE----EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 765432 2234457899999999998877642 6676655444444
No 130
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.46 E-value=1.2e-12 Score=143.27 Aligned_cols=178 Identities=19% Similarity=0.238 Sum_probs=150.2
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCC--------------------C--CCCCCCeEEEEECCCCCEEEEEeCCC
Q 004203 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP--------------------L--SPPPRSTIAAAFSPDGKTLASTHGDH 129 (768)
Q Consensus 72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~--------------------L--~gH~~~VtslafSPDG~~LaSgS~Dg 129 (768)
.+.++..++..++++++.+++|.-|+..++. . +.|...|.+++.|+||++|++|+.|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 4445666788999999999999999987551 1 26888899999999999999999999
Q ss_pred eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEE
Q 004203 130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAV 208 (768)
Q Consensus 130 tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~Lat 208 (768)
.|.|||.++.+.++.+++|.+.|.+++|-. +...+++++.|++|++|+++....+.+ ++|++.|..+.-..-++.+.+
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV 303 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV 303 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEe
Confidence 999999999999999999999999999988 888999999999999999998777766 689999999988888887777
Q ss_pred EE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 209 AS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 209 gS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
|+ |.++++|++..... ..+.++...+.+++|-.+.. +++++.
T Consensus 304 GgrDrT~rlwKi~eesq----lifrg~~~sidcv~~In~~H-fvsGSd 346 (479)
T KOG0299|consen 304 GGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFINDEH-FVSGSD 346 (479)
T ss_pred ccccceeEEEeccccce----eeeeCCCCCeeeEEEecccc-eeeccC
Confidence 76 55599999944332 34667788999999987665 555554
No 131
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.46 E-value=1.3e-12 Score=137.15 Aligned_cols=189 Identities=18% Similarity=0.275 Sum_probs=151.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccC
Q 004203 81 RRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~ 160 (768)
..+|++.-.+++++.-- ...+.||+..|..++-......+.+++.|.+.+||.+++|+|+..+.||.+.|+++.|++
T Consensus 124 tsrivssFk~~t~~~~l--vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~- 200 (481)
T KOG0300|consen 124 TSRIVSSFKDGTVKFRL--VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN- 200 (481)
T ss_pred cchheeeecCCceeEee--hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-
Confidence 34556665666543211 236889999999999988778999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEC------CC--------Cc----------------------EE-----EEecCCCCeEEEEE
Q 004203 161 NPTIIASGSLDHEVRLWNA------ST--------AE----------------------CI-----GSRDFYRPIASIAF 199 (768)
Q Consensus 161 dg~lLaSgS~DgtVrLWDl------~s--------g~----------------------~i-----~~l~h~~~V~svaf 199 (768)
.+.++++++.|++.+||.. .+ ++ .+ ...+|...|.+..|
T Consensus 201 s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW 280 (481)
T KOG0300|consen 201 SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW 280 (481)
T ss_pred ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh
Confidence 9999999999999999962 11 00 01 11357788899999
Q ss_pred cCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCC
Q 004203 200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG 273 (768)
Q Consensus 200 SPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G 273 (768)
-..|+.+++++-|+ ..+||+.+++... .+.+|....+.++-+|..+.+++++. .||++ +.+.....+.|
T Consensus 281 L~gg~Q~vTaSWDRTAnlwDVEtge~v~---~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQG 355 (481)
T KOG0300|consen 281 LAGGQQMVTASWDRTANLWDVETGEVVN---ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQG 355 (481)
T ss_pred hcCcceeeeeeccccceeeeeccCceec---cccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecc
Confidence 99999999999655 9999999998766 68899999999999999997776665 77776 35556666677
Q ss_pred cccC
Q 004203 274 YWRY 277 (768)
Q Consensus 274 ~~~~ 277 (768)
|...
T Consensus 356 Htdt 359 (481)
T KOG0300|consen 356 HTDT 359 (481)
T ss_pred cccc
Confidence 7553
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.45 E-value=2.1e-12 Score=145.59 Aligned_cols=189 Identities=19% Similarity=0.241 Sum_probs=142.9
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 004203 68 GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ 137 (768)
Q Consensus 68 ~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~ 137 (768)
+.|...+.........|+.+.+||.|.++|.... ....|...|.++.|-|-...|+++++|.++++||++
T Consensus 51 pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 51 PPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred CCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec
Confidence 3344555556667788889999999999998643 234799999999999977789999999999999999
Q ss_pred CCeEEEE--EecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEE-
Q 004203 138 TGSCLKV--LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---------------------------IGS- 187 (768)
Q Consensus 138 tg~~l~~--l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---------------------------i~~- 187 (768)
+++++.. +.||.+.|.+++|+|.+...|++|++||.|.|||++-... +..
T Consensus 131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 9988766 8999999999999999999999999999999999974320 000
Q ss_pred ecCCCCeEE---EEEcCCCCEEEEEEC--CeEEEEEcCCCccccC--C---eEeecC---CCCeEEEEEccCCCeEEEEE
Q 004203 188 RDFYRPIAS---IAFHASGELLAVASG--HKLYIWRYNMREETSS--P---RIVLRT---RRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 188 l~h~~~V~s---vafSPDG~~LatgSd--d~I~IWDl~t~~~~~~--~---~~l~~h---~~~V~sVaFSPDG~~LlaS~ 254 (768)
..+...|.+ +-+..|...||+++. +.|+|||+++...... + ..+..+ ...+.++.....|.++++++
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 112333444 556678888888874 4599999998654221 1 111122 34577888888899999988
Q ss_pred ee
Q 004203 255 EV 256 (768)
Q Consensus 255 sv 256 (768)
.+
T Consensus 291 tD 292 (720)
T KOG0321|consen 291 TD 292 (720)
T ss_pred cC
Confidence 73
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3.7e-12 Score=134.08 Aligned_cols=247 Identities=15% Similarity=0.129 Sum_probs=169.8
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203 78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (768)
Q Consensus 78 ~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~ 153 (768)
+.-|..|+.|..+|.|-+||..+. .+.+|..+|++++||+||+.|+++|.|..|++||+..|.+++.+. ...+|+
T Consensus 32 s~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~ 110 (405)
T KOG1273|consen 32 SRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVW 110 (405)
T ss_pred ccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccc
Confidence 356889999999999999999876 588999999999999999999999999999999999999998887 467899
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecC----CCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccC
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDF----YRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSS 227 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h----~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~ 227 (768)
.+.|+|.+.+.++..-.+..-.+-++..++.... ... .....+..|++.|+++++|.. |++.++|..+.+....
T Consensus 111 ~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas 190 (405)
T KOG1273|consen 111 GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS 190 (405)
T ss_pred eeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee
Confidence 9999997777777666666666667665332211 111 112233468999999999985 6699999999876541
Q ss_pred CeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce
Q 004203 228 PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL 307 (768)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil 307 (768)
+.+. ....|..+.|+-.|+.+++-+.+.-++.-+....+.. |...-+.+...+.+ . ..--.|
T Consensus 191 -~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~--~r~~e~e~~~K~qD-----------v---VNk~~W 252 (405)
T KOG1273|consen 191 -FRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE--GRDGEVEPEHKLQD-----------V---VNKLQW 252 (405)
T ss_pred -eeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc--CccCCcChhHHHHH-----------H---Hhhhhh
Confidence 1221 2468999999999998887766444432111100000 00000000011100 0 011234
Q ss_pred -EEEEecCCCEEEEEecCCCCCcceEEeccCCCceeeeec
Q 004203 308 -RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLT 346 (768)
Q Consensus 308 -~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~~ 346 (768)
.++||.||.+|.+.. ..--.++.+..+.++-+++..
T Consensus 253 k~ccfs~dgeYv~a~s---~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGS---ARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred hheeecCCccEEEecc---ccceeEEEEecCCcceeeeec
Confidence 689999999999864 223457777777777665544
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=3.8e-12 Score=133.78 Aligned_cols=194 Identities=11% Similarity=0.159 Sum_probs=146.9
Q ss_pred ceeecCCcceeecCCCC----------eEEEEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCE
Q 004203 55 SKRLLGETARKCSGSFS----------QIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKT 121 (768)
Q Consensus 55 ~k~~wd~s~~~~s~s~~----------~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~ 121 (768)
.-..||..+..++.... +++.-.-.+...++++.-|+.|+.+|+.++ ++..|.+.|.|+.+++-...
T Consensus 29 LvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~ 108 (323)
T KOG1036|consen 29 LVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGC 108 (323)
T ss_pred EEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCe
Confidence 34458888877764432 222223335678999999999999999987 57789999999999998889
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---------------EE
Q 004203 122 LASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---------------IG 186 (768)
Q Consensus 122 LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---------------i~ 186 (768)
+++||+|++|++||.+.......+. ....|.++.. .++.|+.|..|..|.+||+++... +.
T Consensus 109 vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~ 184 (323)
T KOG1036|consen 109 VISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVA 184 (323)
T ss_pred EEEcccCccEEEEeccccccccccc-cCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEE
Confidence 9999999999999998755555554 3447888776 568888889999999999976321 00
Q ss_pred E---------------------------------ec-CC---------CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC
Q 004203 187 S---------------------------------RD-FY---------RPIASIAFHASGELLAVASGHK-LYIWRYNMR 222 (768)
Q Consensus 187 ~---------------------------------l~-h~---------~~V~svafSPDG~~LatgSdd~-I~IWDl~t~ 222 (768)
. +. |. .+|++++|+|--..|++|+.|+ |.+||+.+.
T Consensus 185 ~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 185 LVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred EecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 0 00 11 2588999999988999998555 999999988
Q ss_pred ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+... .+..-...|.+++|+-||..|+++.+
T Consensus 265 Krl~---q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 265 KRLK---QLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhh---hccCCCCceEEEEeccCCCeEEEEec
Confidence 7644 34444678999999999998877765
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.44 E-value=1.5e-12 Score=143.13 Aligned_cols=179 Identities=17% Similarity=0.165 Sum_probs=146.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC-CCCcEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWV 154 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-~g~V~s 154 (768)
...++++++..+.|++||++.. .+++|+..|+++.++-...+||+++..|.|.|..+.++.....|... +..|+-
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 4578999999999999999854 68999999999999999999999999999999999999888888654 456778
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCCccccCCeE
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMREETSSPRI 230 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--~h~~~V~svafSPDG~-~LatgS-dd~I~IWDl~t~~~~~~~~~ 230 (768)
+.|+|....+|.+++.+|.|.|||+....++..+ .|..+...++|+|.+. +|++.+ |.+|.+||.+......
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~---- 245 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD---- 245 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----
Confidence 9999955567777999999999999887776664 4888999999999876 455555 5569999998766533
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS 262 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg 262 (768)
...-..+...|+|+++|.+|+++.+ ..|++..
T Consensus 246 ~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 246 RLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred eeeecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 3334568999999999998888765 4566643
No 136
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.44 E-value=2.2e-12 Score=139.42 Aligned_cols=173 Identities=23% Similarity=0.333 Sum_probs=139.1
Q ss_pred EEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC--------C---
Q 004203 83 GLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--------T--- 138 (768)
Q Consensus 83 ~LvSgs~DgsIrlWd~~t~-------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~--------t--- 138 (768)
.+++++-|..|++|..... .|..|...|+++.|+|+|.+|++|+++|.|.+|-.. +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 8999999999999998743 367899999999999999999999999999999654 3
Q ss_pred -----CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECC
Q 004203 139 -----GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH 212 (768)
Q Consensus 139 -----g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd 212 (768)
....+.+.+|...|+.++|+| ++.++++++.|.++++||+..|+....+ +|...+..++|.|-++++++-+.+
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred hCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccC
Confidence 234577889999999999999 9999999999999999999999998886 488899999999999999988755
Q ss_pred e-EEEEEcCCCccccCCe----------------EeecC----CCCeEEEEEccCCCeEEEEEee
Q 004203 213 K-LYIWRYNMREETSSPR----------------IVLRT----RRSLRAVHFHPHAAPLLLTAEV 256 (768)
Q Consensus 213 ~-I~IWDl~t~~~~~~~~----------------~l~~h----~~~V~sVaFSPDG~~LlaS~sv 256 (768)
. .+.+++.......... ...-| ..-.+.++|+|||..+++-++.
T Consensus 187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 4 5555554433211000 00111 1345778999999988876653
No 137
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.43 E-value=7.3e-12 Score=144.61 Aligned_cols=207 Identities=15% Similarity=0.155 Sum_probs=169.8
Q ss_pred EEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE---ecCC
Q 004203 83 GLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL---HGHR 149 (768)
Q Consensus 83 ~LvSgs~DgsIrlWd~~t~~----------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l---~gH~ 149 (768)
.+.....+...+.|+....+ ++.-...+++++.++-|++.+.|...|+|-+||+++|-....| ..|.
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~ 493 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK 493 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcccc
Confidence 34444556678888877543 3344478999999999999999999999999999999888888 5899
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSP 228 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~ 228 (768)
++|+.++..- -++.+++++.||.+++||...+..+..+.....+..+..+.....++.+.++- |+++|..+.+..+
T Consensus 494 ~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR-- 570 (910)
T KOG1539|consen 494 GEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR-- 570 (910)
T ss_pred CceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH--
Confidence 9999999987 78899999999999999999999888888889999999999999999998776 9999999988755
Q ss_pred eEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCC
Q 004203 229 RIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLIT 303 (768)
Q Consensus 229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~s 303 (768)
.+.+|.+.|++++|||||++|++++. .||+.++ ..+... ...
T Consensus 571 -~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~----------------------------~lID~~----~vd 617 (910)
T KOG1539|consen 571 -EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG----------------------------TLIDGL----LVD 617 (910)
T ss_pred -HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc----------------------------ceeeeE----ecC
Confidence 67789999999999999999998875 4444322 111111 123
Q ss_pred CCceEEEEecCCCEEEEEecCC
Q 004203 304 PPFLRPSFVRDDERISLQHTEH 325 (768)
Q Consensus 304 lpil~psFSpDG~rIv~~~~d~ 325 (768)
.|+...+|||.|..++..|-+.
T Consensus 618 ~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred CcceeeEECCCCCEEEEEEecC
Confidence 4677899999999999987754
No 138
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.43 E-value=1.4e-12 Score=140.79 Aligned_cols=145 Identities=23% Similarity=0.370 Sum_probs=120.6
Q ss_pred CCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCC---------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203 107 PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTG---------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (768)
Q Consensus 107 ~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg---------~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL 176 (768)
..+|..+.|.++.. .|++|+.|..|++|-++.+ +....+..|.+.|+++.|+| +|++++||+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 45799999999666 9999999999999987543 23456778999999999999 9999999999999999
Q ss_pred EECC--------C-----Cc---EEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCe
Q 004203 177 WNAS--------T-----AE---CIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSL 238 (768)
Q Consensus 177 WDl~--------s-----g~---~i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V 238 (768)
|... + .+ ..+. ..|...|..++|+||+.++++++ ++.+++||+..+.... ...+|...|
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---~~~dh~~yv 168 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---ILDDHEHYV 168 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---ecccccccc
Confidence 9776 2 11 1111 24888999999999999999999 5569999999998654 677899999
Q ss_pred EEEEEccCCCeEEEEEe
Q 004203 239 RAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 239 ~sVaFSPDG~~LlaS~s 255 (768)
..++|.|-++++++-+.
T Consensus 169 qgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSS 185 (434)
T ss_pred ceeecchhhhhhhhhcc
Confidence 99999999998876554
No 139
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=3.6e-11 Score=136.04 Aligned_cols=221 Identities=17% Similarity=0.125 Sum_probs=138.6
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (768)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL 165 (768)
.|.+||.... ++..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+....|+| |++.|
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~~l 254 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGRTL 254 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence 5666676433 356788889999999999999887753 469999999987543 333344566789999 77766
Q ss_pred E-EEeCCCe--EEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEc--CCCccccCCeEeecCCCCe
Q 004203 166 A-SGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRY--NMREETSSPRIVLRTRRSL 238 (768)
Q Consensus 166 a-SgS~Dgt--VrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d~I~IWDl--~t~~~~~~~~~l~~h~~~V 238 (768)
+ +.+.++. |+++|+.+++......+........|+|||+.|++.++ +...+|.+ .++... .+.......
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~g~~~ 330 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFTGSYN 330 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE----EEecCCCCc
Confidence 5 5677776 55556666654444444555667889999999988775 33555544 443321 222223334
Q ss_pred EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (768)
Q Consensus 239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI 318 (768)
....|||||++|+.++.... . ..+.+++...+....+... . ....|.|+|||+.|
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g----~----------------~~I~v~d~~~g~~~~lt~~-~----~~~~p~~spdg~~l 385 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGG----A----------------FKLYVQDLATGQVTALTDT-T----RDESPSFAPNGRYI 385 (427)
T ss_pred CceEECCCCCEEEEEEccCC----c----------------EEEEEEECCCCCeEEccCC-C----CccCceECCCCCEE
Confidence 56889999999887664211 0 0234444333322222111 0 11368999999999
Q ss_pred EEEecCCCCCcceEEeccCCCceeee
Q 004203 319 SLQHTEHDSGATRTQQSLRSSSSVRL 344 (768)
Q Consensus 319 v~~~~d~~~Gs~~~~~~~~ss~~~rl 344 (768)
++..++... +.++..+.++....++
T Consensus 386 ~~~~~~~g~-~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 386 LYATQQGGR-SVLAAVSSDGRIKQRL 410 (427)
T ss_pred EEEEecCCC-EEEEEEECCCCceEEe
Confidence 998765543 4556666655544434
No 140
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.8e-12 Score=134.06 Aligned_cols=199 Identities=17% Similarity=0.208 Sum_probs=134.3
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-----~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL 176 (768)
.|++|.+.|++++|+.||++|++++.|++|++||+++.. +++.-- ..+..+.+.|+|+...++++.-+..++++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 578999999999999999999999999999999997742 111111 12346778999966667777777779999
Q ss_pred EECCCCcE---EEE--------e--cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEE
Q 004203 177 WNASTAEC---IGS--------R--DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVH 242 (768)
Q Consensus 177 WDl~sg~~---i~~--------l--~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVa 242 (768)
|.+...+. ... + .|.-.+..+-...++++|++++.|+ |.+||++ ++... .+......-+..+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~---~idtnq~~n~~aa 235 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ---SIDTNQSSNYDAA 235 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee---eecccccccccee
Confidence 98764322 100 1 2445666777788889999999665 9999998 44333 3444455667889
Q ss_pred EccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEe
Q 004203 243 FHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH 322 (768)
Q Consensus 243 FSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~ 322 (768)
.||+|+++++++-.-|+..|+. +.+-+|.++-..++ -...+.....++.+||++..+++...
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~---~f~kdG~fqev~rv---------------f~LkGH~saV~~~aFsn~S~r~vtvS 297 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEP---IFTKDGTFQEVKRV---------------FSLKGHQSAVLAAAFSNSSTRAVTVS 297 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEE---EeccCcchhhhhhh---------------heeccchhheeeeeeCCCcceeEEEe
Confidence 9999998877765334432211 11223332211111 12334455677899999999999753
Q ss_pred c
Q 004203 323 T 323 (768)
Q Consensus 323 ~ 323 (768)
-
T Consensus 298 k 298 (420)
T KOG2096|consen 298 K 298 (420)
T ss_pred c
Confidence 3
No 141
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.42 E-value=4.5e-12 Score=146.28 Aligned_cols=170 Identities=14% Similarity=0.130 Sum_probs=146.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L---~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
=|...+-|...|.|.+++++.+ .+ ..|++.|++++...-++.+++++.+|.++.||+++...+..++ -+..+
T Consensus 459 CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~ 537 (910)
T KOG1539|consen 459 CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSI 537 (910)
T ss_pred cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCc
Confidence 3556777888999999999977 34 5899999999999999999999999999999999888777775 34567
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeE
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRI 230 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~ 230 (768)
..+..+. ...+++.+..|-.|+++|+.+.+.++.+ +|...|++++|+|||++|++++- ++|++||+.++..+.
T Consensus 538 ~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID---- 612 (910)
T KOG1539|consen 538 TGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID---- 612 (910)
T ss_pred ceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee----
Confidence 7788888 8889999999999999999999988886 49999999999999999999994 569999999998654
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEe
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
......+..++.|||+|.+|+++-.
T Consensus 613 ~~~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 613 GLLVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred eEecCCcceeeEECCCCCEEEEEEe
Confidence 3445788999999999997776654
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.41 E-value=2.9e-12 Score=145.28 Aligned_cols=191 Identities=17% Similarity=0.227 Sum_probs=159.3
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC---CCCEEEEEeCCCeEEEEeCCC
Q 004203 66 CSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP---DGKTLASTHGDHTVKIIDCQT 138 (768)
Q Consensus 66 ~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP---DG~~LaSgS~DgtVrVWDl~t 138 (768)
++..++....+.+.+++.|++|...|.++++++..- .+..|...|.|+.||. ..++||+++.|..|.|||+..
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 556677888888899999999999999999999743 6779999999999997 457899999999999999853
Q ss_pred -CeEEEEEecCCCC-------------------------------------------------cEEEEEccCCCCEEEEE
Q 004203 139 -GSCLKVLHGHRRT-------------------------------------------------PWVVRFHPLNPTIIASG 168 (768)
Q Consensus 139 -g~~l~~l~gH~g~-------------------------------------------------V~sVafSP~dg~lLaSg 168 (768)
...+.++.+|... ++.++..| ..++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~ 614 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTV 614 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEE
Confidence 2333444444444 44455555 56889999
Q ss_pred eCCCeEEEEECCCCcEEEEec----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEE
Q 004203 169 SLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHF 243 (768)
Q Consensus 169 S~DgtVrLWDl~sg~~i~~l~----h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaF 243 (768)
+.|+.|+|||+++|+..+.|+ |++..-.+..+|.|-+|++.+.++ +.++|+-+++... .+.+|...|+.+.|
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA---~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA---QMTGHSEAVTGVKF 691 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh---hhcCcchheeeeee
Confidence 999999999999999999875 667788899999999999998666 9999999999866 78899999999999
Q ss_pred ccCCCeEEEEEe-----eCCcC
Q 004203 244 HPHAAPLLLTAE-----VNDLD 260 (768)
Q Consensus 244 SPDG~~LlaS~s-----vwdl~ 260 (768)
.+|-+.|+..++ +|.+.
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cccchhheeecCCceEEEEECc
Confidence 999999988766 66654
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=4.7e-12 Score=138.13 Aligned_cols=175 Identities=18% Similarity=0.207 Sum_probs=137.7
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEE-EEEecCC
Q 004203 76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHR 149 (768)
Q Consensus 76 a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l-~~l~gH~ 149 (768)
+-+.....|+|++.|.+|++||+.++ .+..|.+.|.++.|+| ...+|++|+.|++|.+.|++..... ..++ -.
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~ 329 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FD 329 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-ec
Confidence 34456788999999999999999988 4667999999999999 7789999999999999999843222 2233 34
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-cCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccc
Q 004203 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREET 225 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-~~i~~l-~h~~~V~svafSPDG~-~LatgSdd~-I~IWDl~t~~~~ 225 (768)
+.|-.++|.|.....++++..||+|+-+|+|+. +++.++ .|.+.|.++++++.-. +|++++.++ +++|++......
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 668999999977888999999999999999975 777775 5999999999998766 566766555 999998765432
Q ss_pred cCCeEeecC---CCCeEEEEEccCCCeEEEEEe
Q 004203 226 SSPRIVLRT---RRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 226 ~~~~~l~~h---~~~V~sVaFSPDG~~LlaS~s 255 (768)
. ...| -+...+.++.|+-.++++.++
T Consensus 410 ~----v~~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 410 S----VKEHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred c----cccccccccceeecccCCCcceEEEecC
Confidence 1 2222 133778889998887776654
No 144
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.41 E-value=3.3e-12 Score=135.09 Aligned_cols=175 Identities=22% Similarity=0.331 Sum_probs=134.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEE---ecCCCC
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVL---HGHRRT 151 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg~~l~~l---~gH~g~ 151 (768)
..-.++.++.-|.|++.|.... .+.+|...|+.+.|.|+ .++++++|.|..||+||+++..++..| .||.+.
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 3556778888999999999866 47799999999999994 579999999999999999999999887 579999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE-------------------------Ee----cCCCC---------
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG-------------------------SR----DFYRP--------- 193 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~-------------------------~l----~h~~~--------- 193 (768)
|.++.|++ ++++|+|++.|.+|++|++...+... .+ -|..+
T Consensus 184 VLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd 262 (385)
T KOG1034|consen 184 VLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD 262 (385)
T ss_pred EEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh
Confidence 99999999 99999999999999999997321100 00 00000
Q ss_pred -----------------------------------------------eEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccc
Q 004203 194 -----------------------------------------------IASIAFHASGELLAVASG-HKLYIWRYNMREET 225 (768)
Q Consensus 194 -----------------------------------------------V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~ 225 (768)
....+|+|-++.||.|.. ++|++||++..+..
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 112355666778888874 56999999987753
Q ss_pred cCCeEe-ecCCCCeEEEEEccCCCeEEEEEe
Q 004203 226 SSPRIV-LRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 226 ~~~~~l-~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
...... ......|+..+|+.||..|+..+.
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeC
Confidence 212111 123567999999999998888776
No 145
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.40 E-value=4.6e-12 Score=136.45 Aligned_cols=173 Identities=20% Similarity=0.247 Sum_probs=143.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~g 147 (768)
+...|+||++|.+|.+|++-.. .|.+|.+.|--++|+| -.+.|++++.|.+|.+||+.+|+.+..+.
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~- 171 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD- 171 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-
Confidence 5678999999999999998643 3779999999999999 56789999999999999999999988887
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCC-CeEEEEEcCCCCEEEEEEC---C-eEEEEEcCC
Q 004203 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYR-PIASIAFHASGELLAVASG---H-KLYIWRYNM 221 (768)
Q Consensus 148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~-~V~svafSPDG~~LatgSd---d-~I~IWDl~t 221 (768)
|..-|+++.|+- ||.++++++.|+.|||||.++++.+..- .|.+ .-..+.|-.+|.++.+|-. + .+-+||..+
T Consensus 172 hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 172 HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence 999999999999 9999999999999999999999988774 5655 4556779999996555542 2 399999877
Q ss_pred CccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
-+... ..........|.---|.+|.+.+...+.
T Consensus 251 l~eP~-~~~elDtSnGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 251 LEEPI-ALQELDTSNGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred ccCcc-eeEEeccCCceEEeeecCCCCEEEEEec
Confidence 66532 2334456778888889999886666554
No 146
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.40 E-value=4.6e-12 Score=138.51 Aligned_cols=182 Identities=19% Similarity=0.197 Sum_probs=143.0
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEe--
Q 004203 78 RDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLH-- 146 (768)
Q Consensus 78 ~d~g~~LvSgs~DgsIrlWd~~t~--------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~-- 146 (768)
......+++|...|.|-+||+.+. .+..|..+|.++.|+| +-..+++.|.||+|++-|++++.....+.
T Consensus 197 t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~ 276 (498)
T KOG4328|consen 197 TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD 276 (498)
T ss_pred cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC
Confidence 345678899999999999999532 3678999999999999 77899999999999999998875433333
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe-cCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCC
Q 004203 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMR 222 (768)
Q Consensus 147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l-~h~~~V~svafSPDG~-~LatgS-dd~I~IWDl~t~ 222 (768)
.....+..+.|+- +...++.+..=|...+||++++.. ...+ -|...|..++++|... +|++++ |++.+|||++.-
T Consensus 277 ~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l 355 (498)
T KOG4328|consen 277 TDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQL 355 (498)
T ss_pred ccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhh
Confidence 2444566788888 666677777767999999998655 3333 3777999999999776 677777 566999999876
Q ss_pred ccccC-CeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203 223 EETSS-PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (768)
Q Consensus 223 ~~~~~-~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~ 260 (768)
..... ......|...|.++.|||++-.|++++....++
T Consensus 356 ~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 356 RGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred cCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence 55442 345667999999999999998899888766665
No 147
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.39 E-value=2.3e-11 Score=127.65 Aligned_cols=199 Identities=13% Similarity=0.076 Sum_probs=146.6
Q ss_pred ceeecCCcceeecCCC--------------CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECC
Q 004203 55 SKRLLGETARKCSGSF--------------SQIFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSP 117 (768)
Q Consensus 55 ~k~~wd~s~~~~s~s~--------------~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~---L~gH~~~VtslafSP 117 (768)
....||..+..|...- ..+-+...+++..+++++.|+.+++||+.+++ +..|.++|..+.|-+
T Consensus 44 ~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 44 AAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred EecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec
Confidence 3556777776665322 23444567788999999999999999999884 568999999999988
Q ss_pred CCC--EEEEEeCCCeEEEEeCCCCeEEEEEec-------------------------------------C----CCCcEE
Q 004203 118 DGK--TLASTHGDHTVKIIDCQTGSCLKVLHG-------------------------------------H----RRTPWV 154 (768)
Q Consensus 118 DG~--~LaSgS~DgtVrVWDl~tg~~l~~l~g-------------------------------------H----~g~V~s 154 (768)
... .|++||.|++||.||.+....+.++.- + .-.+++
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~ 203 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRC 203 (347)
T ss_pred CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeE
Confidence 555 899999999999999987654443321 1 123677
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--ec-CC---------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD-FY---------RPIASIAFHASGELLAVAS-GHKLYIWRYNM 221 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~-h~---------~~V~svafSPDG~~LatgS-dd~I~IWDl~t 221 (768)
|+..+ +.+..+.|+-.|.+-|..+..+..... +. |. ..|++++|+|.-..|++++ ||.+.+||-+.
T Consensus 204 va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 204 VACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred EEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 77777 666678888888888888877533221 21 22 2578899999877777766 66699999877
Q ss_pred CccccCCeEeecCCCCeEEEEEccCCCeEEEEEe-eC
Q 004203 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-VN 257 (768)
Q Consensus 222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-vw 257 (768)
..... ....|..+|.+..|+.+|.+++.+.+ +|
T Consensus 283 r~kLk---~s~~~~qpItcc~fn~~G~ifaYA~gYDW 316 (347)
T KOG0647|consen 283 RTKLK---TSETHPQPITCCSFNRNGSIFAYALGYDW 316 (347)
T ss_pred hhhhh---ccCcCCCccceeEecCCCCEEEEEeeccc
Confidence 76433 45678899999999999998777655 44
No 148
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.37 E-value=2.1e-10 Score=127.92 Aligned_cols=219 Identities=15% Similarity=0.117 Sum_probs=143.1
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (768)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL 165 (768)
.|.++|.... .+..+...+...+|+|||++|+.++.+ ..|++||+.+++.... ..+.+.+..+.|+| |++.|
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~sp-Dg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSP-DGSKL 248 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECC-CCCEE
Confidence 5777777533 355677789999999999999987654 4899999998865433 34555667789999 77655
Q ss_pred E-EEeCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEeecCCCCe
Q 004203 166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSL 238 (768)
Q Consensus 166 a-SgS~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~~~~~~~~~l~~h~~~V 238 (768)
+ +.+.++ .|++||+.+++......+........|+|||+.|++.++. .|+++|+.+++.. .+..+...+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCc
Confidence 5 445444 6999999988766555555555677999999999887742 3888888765432 234445667
Q ss_pred EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (768)
Q Consensus 239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI 318 (768)
..+.|+|||++++.+..... . ..+.+++...+....+... .....|.|+|||+.|
T Consensus 325 ~~~~~spdg~~i~~~~~~~~----~----------------~~i~~~d~~~~~~~~l~~~-----~~~~~p~~spdg~~l 379 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGG----G----------------FNIAVMDLDGGGERVLTDT-----GLDESPSFAPNGRMI 379 (417)
T ss_pred cCeEECCCCCEEEEEEccCC----c----------------eEEEEEeCCCCCeEEccCC-----CCCCCceECCCCCEE
Confidence 78899999998888764320 0 0122222222111111110 011257899999999
Q ss_pred EEEecCCCCCcceEEeccCCCcee
Q 004203 319 SLQHTEHDSGATRTQQSLRSSSSV 342 (768)
Q Consensus 319 v~~~~d~~~Gs~~~~~~~~ss~~~ 342 (768)
++...++.. ...+....++....
T Consensus 380 ~~~~~~~~~-~~l~~~~~~g~~~~ 402 (417)
T TIGR02800 380 LYATTRGGR-GVLGLVSTDGRFRA 402 (417)
T ss_pred EEEEeCCCc-EEEEEEECCCceee
Confidence 998665433 34555555554443
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.7e-11 Score=134.26 Aligned_cols=174 Identities=14% Similarity=0.150 Sum_probs=142.1
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCC------CCCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203 80 ARR-GLASWVEAESLHHLRPKYCP------LSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (768)
Q Consensus 80 ~g~-~LvSgs~DgsIrlWd~~t~~------L~gH~-~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~ 151 (768)
.+. .+++.+...-...||+++.+ +.++. ..+.....|+|+++|+..+..|.|.+....|++.+..++ -.+.
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~ 346 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGV 346 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccE
Confidence 444 88888888899999998763 33444 468889999999999999999999999999999998887 4677
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCe--EEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCC
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGELLAVASGHK-LYIWRYNMREETSSP 228 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V--~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~ 228 (768)
|..++|+. +++.|+..+.+|.|++||++...++..+...+.| +++|.+++|.+||+|++.+ |.|||.++......|
T Consensus 347 v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 347 VSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred EeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence 99999998 8899999999999999999999999998777765 4577779999999999876 999998765332222
Q ss_pred eE---eecCCCCeEEEEEccCCCeEEEEEe
Q 004203 229 RI---VLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 229 ~~---l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.. +..-...|++++|++|++.|+..+.
T Consensus 426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 426 KPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred CchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 22 2223568999999999997766655
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.5e-10 Score=131.62 Aligned_cols=187 Identities=16% Similarity=0.117 Sum_probs=147.1
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 004203 73 IFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPP-PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146 (768)
Q Consensus 73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH-~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~ 146 (768)
...|.......|+.+-.++.|.+|++... .+.++ .+.|.+++|+ ++..|++.+.+|.|.-||+.+++....+.
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d 107 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNID 107 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEec
Confidence 34455566677999999999999999865 24444 5679999999 66778899999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--ec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC
Q 004203 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMR 222 (768)
Q Consensus 147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~ 222 (768)
...+.|++++.+| .++.++.|+.||.++++++..++.... +. ..+.+.++.|+|++..|+.|+.|+ |++||+.++
T Consensus 108 ~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 108 SNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred CCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence 9999999999999 889999999999888888888877654 33 458999999999999999999666 999999988
Q ss_pred ccccCCeE-eec----CCCCeEEEEEccCCCeEEEEEe-----eCCcCCC
Q 004203 223 EETSSPRI-VLR----TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS 262 (768)
Q Consensus 223 ~~~~~~~~-l~~----h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg 262 (768)
........ +.+ ...-|++|.|-.|+. |+++-+ .||-..+
T Consensus 187 ~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 187 QTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG 235 (691)
T ss_pred ceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc
Confidence 76431111 111 223588899887776 554332 5655543
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.35 E-value=2.6e-12 Score=144.12 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=133.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~g 147 (768)
+..+|+.+.+|+.|++|.+..+ .++.|.+.|+++.|+| -.+.|++++.|.+|++||+.+++....|.+
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g 718 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG 718 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence 5678999999999999998754 4778999999999999 678999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEec--CCCCeEEEEEcCCCCEEEEEECCe-----EEEEEc
Q 004203 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSRD--FYRPIASIAFHASGELLAVASGHK-----LYIWRY 219 (768)
Q Consensus 148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l~--h~~~V~svafSPDG~~LatgSdd~-----I~IWDl 219 (768)
|++.|..++||| +|+.+++.+.||+|++|+-++++. ++.-. ....-..+.|.-||+++++.+-++ |.+||.
T Consensus 719 HtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 719 HTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred CcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence 999999999999 999999999999999999988654 22211 223456788999999888776433 899987
Q ss_pred CCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.+-.............-.+.--.+.+|...++.++.
T Consensus 798 q~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 798 QTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK 833 (1012)
T ss_pred hhccCCcceeeeecccCccccccccCCCceEEEecC
Confidence 765431111111222222223345667666666654
No 152
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.3e-10 Score=130.45 Aligned_cols=221 Identities=17% Similarity=0.137 Sum_probs=138.7
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (768)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL 165 (768)
.|.++|.... .+..+...+....|||||++|+..+.+ ..|++||+.+++.... ....+......|+| |++.|
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSP-DG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSP-DGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECC-CCCEE
Confidence 4666666443 355677788999999999999877653 3699999998875332 22233344689999 77766
Q ss_pred EE-EeCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeEeecCCCCe
Q 004203 166 AS-GSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIVLRTRRSL 238 (768)
Q Consensus 166 aS-gS~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d~--I~IWDl~t~~~~~~~~~l~~h~~~V 238 (768)
+. .+.++ .|++||+.+++......+.......+|+|||++|++.++ +. |+++|+.+++... +.......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----LTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----EecCCCCC
Confidence 54 56666 488889998877665555556678899999999988774 22 7778887665322 22222334
Q ss_pred EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (768)
Q Consensus 239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI 318 (768)
....|+|||++++++...... . .+...+..++....+... . ....|.|+|||+.|
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~------~--------------~I~~~dl~~g~~~~lt~~-~----~d~~ps~spdG~~I 407 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGK------F--------------NIARQDLETGAMQVLTST-R----LDESPSVAPNGTMV 407 (448)
T ss_pred cCeeECCCCCEEEEEEecCCc------e--------------EEEEEECCCCCeEEccCC-C----CCCCceECCCCCEE
Confidence 457999999998886542110 0 122222222211111111 0 11257899999999
Q ss_pred EEEecCCCCCcceEEeccCCCceeee
Q 004203 319 SLQHTEHDSGATRTQQSLRSSSSVRL 344 (768)
Q Consensus 319 v~~~~d~~~Gs~~~~~~~~ss~~~rl 344 (768)
++....+. ...++..+.++...+++
T Consensus 408 ~~~~~~~g-~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 408 IYSTTYQG-KQVLAAVSIDGRFKARL 432 (448)
T ss_pred EEEEecCC-ceEEEEEECCCCceEEC
Confidence 99765443 23456666666555544
No 153
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.6e-10 Score=128.58 Aligned_cols=222 Identities=13% Similarity=0.105 Sum_probs=141.9
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (768)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL 165 (768)
.|.++|.+.. .+..+...+....|||||++|+..+.+ ..|++||+++++... +....+.+....|+| |++.|
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSKL 257 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCEE
Confidence 3667776644 355677889999999999999877653 479999999887544 333334455689999 77766
Q ss_pred E-EEeCCC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC--e--EEEEEcCCCccccCCeEeecCCCCe
Q 004203 166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL 238 (768)
Q Consensus 166 a-SgS~Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd--~--I~IWDl~t~~~~~~~~~l~~h~~~V 238 (768)
+ +.+.++ .|++||+.+++......+........|+|||+.|++.++. . |+++|+.+++... +.......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----lt~~~~~~ 333 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----VTFVGNYN 333 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eecCCCCc
Confidence 6 455555 6999999998776655555566678999999998888742 2 8888887765322 22222334
Q ss_pred EEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEE
Q 004203 239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI 318 (768)
Q Consensus 239 ~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rI 318 (768)
....|+|||++++.+..... . ..+.+.+..++....+. ... ....|.|+|||+.|
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~----~----------------~~l~~~dl~tg~~~~lt-~~~----~~~~p~~spdg~~i 388 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDG----N----------------FHVAAQDLQRGSVRILT-DTS----LDESPSVAPNGTML 388 (430)
T ss_pred cceEECCCCCEEEEEEccCC----c----------------eEEEEEECCCCCEEEcc-CCC----CCCCceECCCCCEE
Confidence 46789999999887764211 0 01333333322221111 110 11257999999999
Q ss_pred EEEecCCCCCcceEEeccCCCceeeee
Q 004203 319 SLQHTEHDSGATRTQQSLRSSSSVRLL 345 (768)
Q Consensus 319 v~~~~d~~~Gs~~~~~~~~ss~~~rl~ 345 (768)
++...+... ..++..+.++....+++
T Consensus 389 ~~~~~~~g~-~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 389 IYATRQQGR-GVLMLVSINGRVRLPLP 414 (430)
T ss_pred EEEEecCCc-eEEEEEECCCCceEECc
Confidence 997554332 33555566655554443
No 154
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.34 E-value=9.7e-11 Score=129.42 Aligned_cols=171 Identities=16% Similarity=0.244 Sum_probs=137.9
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe------------
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS------------ 140 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~------------ 140 (768)
.-..+..++++..+|.|.+|+..+++ ...|.+.|.+++.-.+|.+|- |+.|..|..||-.-.+
T Consensus 253 ~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~ 331 (626)
T KOG2106|consen 253 TFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGP 331 (626)
T ss_pred EEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCC
Confidence 33456778899999999999998762 348999999999999997765 9999999999831100
Q ss_pred ----------------------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Q 004203 141 ----------------------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR 192 (768)
Q Consensus 141 ----------------------------~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~ 192 (768)
......+|+...+.++.+| +.+.+++++.|+.++||+ ..+.+.+.....
T Consensus 332 iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d 408 (626)
T KOG2106|consen 332 IRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIED 408 (626)
T ss_pred eeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecC
Confidence 0012247888899999999 899999999999999999 666777777889
Q ss_pred CeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEee
Q 004203 193 PIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEV 256 (768)
Q Consensus 193 ~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~sv 256 (768)
++.+++|+|.| .++.|+ .|...+.|..+...+. +.....+++.+.|+|+|.+|+.++..
T Consensus 409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~----~~~d~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT----IHTDNEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred ceeEeeccCcc-eEEEeeccceEEEEecccceeEE----EEecCCceEEEEEcCCCCEEEEecCC
Confidence 99999999999 888888 5669999998865433 33338899999999999988877653
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.2e-10 Score=122.61 Aligned_cols=168 Identities=19% Similarity=0.198 Sum_probs=131.1
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCC---------CC
Q 004203 79 DARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQ---------TG 139 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~--------~L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~---------tg 139 (768)
-.|+++++++.|++|++||.+.. ..+.|.+.|..+.|.+ =|+.+|+++.|+++.||.-. ..
T Consensus 23 ~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~W 102 (361)
T KOG2445|consen 23 FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRW 102 (361)
T ss_pred ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccccee
Confidence 36899999999999999996533 3568999999999987 68999999999999999752 12
Q ss_pred eEEEEEecCCCCcEEEEEccCC-CCEEEEEeCCCeEEEEECCCCcE------EEEec--------CCCCeEEEEEcCC--
Q 004203 140 SCLKVLHGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAEC------IGSRD--------FYRPIASIAFHAS-- 202 (768)
Q Consensus 140 ~~l~~l~gH~g~V~sVafSP~d-g~lLaSgS~DgtVrLWDl~sg~~------i~~l~--------h~~~V~svafSPD-- 202 (768)
....++......|+.|.|.|.. |-.+|+++.||.||||+.-.... +..+. +.....|+.|+|.
T Consensus 103 v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~ 182 (361)
T KOG2445|consen 103 VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM 182 (361)
T ss_pred EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccc
Confidence 3456677778899999999933 44788999999999998765332 22222 5567889999974
Q ss_pred -CCEEEEEECC------eEEEEEcCCCc-cccCCeEeecCCCCeEEEEEccC
Q 004203 203 -GELLAVASGH------KLYIWRYNMRE-ETSSPRIVLRTRRSLRAVHFHPH 246 (768)
Q Consensus 203 -G~~LatgSdd------~I~IWDl~t~~-~~~~~~~l~~h~~~V~sVaFSPD 246 (768)
..+|++|+++ +++||...... .-.....+.+|..+|++|+|.|+
T Consensus 183 ~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 183 HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 4589999977 69999886654 22223356689999999999996
No 156
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.32 E-value=6.1e-11 Score=134.78 Aligned_cols=242 Identities=14% Similarity=0.202 Sum_probs=171.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC---------C--------------------------------CCCCCCeEEEEECCC
Q 004203 80 ARRGLASWVEAESLHHLRPKYCP---------L--------------------------------SPPPRSTIAAAFSPD 118 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~---------L--------------------------------~gH~~~VtslafSPD 118 (768)
....+++++.|++|++|+++.++ + ....-.|.+++.|||
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 45679999999999999998631 0 023446899999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccC--CCCEEEEEeCCCeEEEEECCCC-cEEEEe-cCCCCe
Q 004203 119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL--NPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPI 194 (768)
Q Consensus 119 G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~--dg~lLaSgS~DgtVrLWDl~sg-~~i~~l-~h~~~V 194 (768)
|++||+|..-|+++|||+..-+....+..|...|.|+.|+-. ..++||++++|.-|++||+... .++.++ +|...|
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 999999999999999999999988999999999999999841 3468999999999999999754 345555 488999
Q ss_pred EEEEEcCCC--CEEEEEECCeEEEEEcCCCccccCCeEee---cCCCCeEEEEEccCCCeEEEEEeeC-----CcCCCCc
Q 004203 195 ASIAFHASG--ELLAVASGHKLYIWRYNMREETSSPRIVL---RTRRSLRAVHFHPHAAPLLLTAEVN-----DLDSSES 264 (768)
Q Consensus 195 ~svafSPDG--~~LatgSdd~I~IWDl~t~~~~~~~~~l~---~h~~~V~sVaFSPDG~~LlaS~svw-----dl~sg~~ 264 (768)
+++.|--.| ..+++++.|+..+|+...+......+... -....++.++..|..+++++.+.+. ++.+++.
T Consensus 551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 999998877 57777777775556654422111011111 1246789999999999999888744 4455555
Q ss_pred ceeEeecCCccc-----------------CCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecC
Q 004203 265 SLTLATSPGYWR-----------------YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE 324 (768)
Q Consensus 265 ~~~L~t~~G~~~-----------------~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d 324 (768)
.+.+....++.. +....+++.+..++++..-..+... -+.-..|++|=+.|+..-.|
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE---~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE---AVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch---heeeeeecccchhheeecCC
Confidence 555555555522 2234455555555555444433211 22367899998888775443
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.29 E-value=2.3e-10 Score=129.43 Aligned_cols=229 Identities=13% Similarity=0.130 Sum_probs=144.1
Q ss_pred CCCCCcceecccccccccCCCccccceeecCCcceeecCCCCeEEE-EEecCCCEEEEEeCCCeEEEEeCCCCC------
Q 004203 30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFE-AGRDARRGLASWVEAESLHHLRPKYCP------ 102 (768)
Q Consensus 30 ~rssk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~~~l~~-a~~d~g~~LvSgs~DgsIrlWd~~t~~------ 102 (768)
...+...++++......+......+.. .....+..+-..++.++- ....+...|++.+-|.+++.||++...
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr-~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~ 139 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFR-LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRL 139 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcc-hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeeccee
Confidence 345566667776666555544443333 000111111111112211 122377889999999999999998763
Q ss_pred CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe---------------------------EEEEEecCCCCcEE
Q 004203 103 LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---------------------------CLKVLHGHRRTPWV 154 (768)
Q Consensus 103 L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~---------------------------~l~~l~gH~g~V~s 154 (768)
+.||.+.|.+++|.| |...|++|+.||.|.|||++-.. .+..-+.+...|..
T Consensus 140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 679999999999999 56788999999999999985321 01111233444444
Q ss_pred ---EEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEEe------c---C---CCCeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004203 155 ---VRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSR------D---F---YRPIASIAFHASGELLAVAS-GHKLYIW 217 (768)
Q Consensus 155 ---VafSP~dg~lLaSgS~-DgtVrLWDl~sg~~i~~l------~---h---~~~V~svafSPDG~~LatgS-dd~I~IW 217 (768)
+.+.. |...||+++. |+.|++||+++....... . + ...+.++..+..|.+|.+.+ |+.|++|
T Consensus 220 svTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 220 SVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY 298 (720)
T ss_pred eeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence 45556 7888888777 999999999976543221 1 2 22566777777788766555 7779999
Q ss_pred EcCCCccccCCeEeecCCCC--eEEEEEccCCCeEEEEEe-----eCCcCC
Q 004203 218 RYNMREETSSPRIVLRTRRS--LRAVHFHPHAAPLLLTAE-----VNDLDS 261 (768)
Q Consensus 218 Dl~t~~~~~~~~~l~~h~~~--V~sVaFSPDG~~LlaS~s-----vwdl~s 261 (768)
++....... ...+.++... -..-..+||+.+++.++. +|.+..
T Consensus 299 nm~s~s~sP-~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 299 NMRSLSISP-VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred eccccCcCc-hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 998765422 1222222211 122347899998888766 666653
No 158
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=3.5e-11 Score=130.88 Aligned_cols=183 Identities=20% Similarity=0.163 Sum_probs=136.8
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147 (768)
Q Consensus 72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g 147 (768)
...++...++..|++|..||.+|+|+.... .+..|.+.|.++.|||||++|++-+.| ..+||+.++|..+.....
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 356666678899999999999999995443 466899999999999999999999999 999999999976655431
Q ss_pred --CCCCcEEEEEccCCC-----CEEEEEeCCCeEEEEECCCCcE------EEEecCCCCeEEEEEcCCCCEEEEEE-CCe
Q 004203 148 --HRRTPWVVRFHPLNP-----TIIASGSLDHEVRLWNASTAEC------IGSRDFYRPIASIAFHASGELLAVAS-GHK 213 (768)
Q Consensus 148 --H~g~V~sVafSP~dg-----~lLaSgS~DgtVrLWDl~sg~~------i~~l~h~~~V~svafSPDG~~LatgS-dd~ 213 (768)
.......+.|+- |+ .+++.-..-+.|++||+..... .+.......|.+++.++||++++.|+ +|.
T Consensus 226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 222345678887 54 2333334455677777654322 11123456899999999999999999 455
Q ss_pred EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004203 214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND 258 (768)
Q Consensus 214 I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwd 258 (768)
|-|++..+.+... .....|..-|+.+.|+||.++++..+..|.
T Consensus 305 Vai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred EEEEEeceeeeeE--eehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 9999988776643 334558889999999999998877655443
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=2.3e-11 Score=128.17 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=115.3
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q 004203 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD 189 (768)
Q Consensus 110 VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~ 189 (768)
..|+.||+.|.+||+|..||.|.|||+.|...-+.+.+|..+|.+++||+ +|+.|+++|+|..|.+||+..|.+.+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999999999999999999999999998899999999999999999 99999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEE--ECCeEEEEEcCCCccccCCeEeecC-CCCeEEEEEccCCCeEEEEEe
Q 004203 190 FYRPIASIAFHASGELLAVA--SGHKLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 190 h~~~V~svafSPDG~~Latg--Sdd~I~IWDl~t~~~~~~~~~l~~h-~~~V~sVaFSPDG~~LlaS~s 255 (768)
...+|..+.|+|.....+++ -+..-.+.++........+..-.+. ...-....|++.|++++++.+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC
Confidence 99999999999965544444 3555666666543321101111111 122234469999999887754
No 160
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=6.3e-11 Score=129.88 Aligned_cols=210 Identities=18% Similarity=0.169 Sum_probs=154.1
Q ss_pred CCCcceecccccccccCCCccccceeecCCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCC---CCCC
Q 004203 32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS---PPPR 108 (768)
Q Consensus 32 ssk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~---gH~~ 108 (768)
+.+|-++|+++..+........... .. .-..+..+..+..|+..+..|-|.+....++++. .-.+
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e---~~---------~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG 345 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVE---EK---------SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG 345 (514)
T ss_pred cceEEEEeeccccccccccCCCCcc---cc---------hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc
Confidence 5678888888665554332222211 00 1122334455668888888999999999888654 3467
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE--EEEEccCCCCEEEEEeCCCeEEEEECCC-----
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW--VVRFHPLNPTIIASGSLDHEVRLWNAST----- 181 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~--sVafSP~dg~lLaSgS~DgtVrLWDl~s----- 181 (768)
.|.++.|+.|++.|+.++.+|.|++||++...++..+...+ .|. .++.++ ++.+||+|+..|.|.|||.++
T Consensus 346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-ccceeeeeecC-CCceEEeccCcceEEEeccchhhccC
Confidence 89999999999999999999999999999999999887543 343 466678 899999999999999999764
Q ss_pred -CcEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 182 -AECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 182 -g~~i~~l~-h~~~V~svafSPDG~~LatgSd---d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.+++..+. ....|+++.|++|+++|+.+|. +.+++-.+.+...-......-..-..|++++|||.|-+++.+..
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 34444443 5678999999999999999984 34999988776543211112233467999999999998887654
No 161
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.27 E-value=1.2e-11 Score=132.16 Aligned_cols=155 Identities=14% Similarity=0.203 Sum_probs=122.5
Q ss_pred CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 004203 105 PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE 183 (768)
Q Consensus 105 gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~ 183 (768)
--...|.++.|+| .-..|++|+.|+.|.+||++++.+++.+.- +-.-+.|+|+| ....+++++.|..++.+|++.-+
T Consensus 185 wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 185 WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCc-cccceeeccccccceehhhhhhc
Confidence 3456789999999 556788888999999999999988766542 33456799999 99999999999999999998743
Q ss_pred -EEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203 184 -CIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (768)
Q Consensus 184 -~i~~-l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~ 260 (768)
++.. .+|.+.|.+++|+|.|+-+++|+.|+ |+||.++.+..-. .....--..|.+|.||-|.+++++++..-+++
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh--hhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence 3333 46889999999999999999999666 9999998775422 11112235699999999999988887766665
Q ss_pred CCC
Q 004203 261 SSE 263 (768)
Q Consensus 261 sg~ 263 (768)
.|+
T Consensus 341 lWk 343 (433)
T KOG0268|consen 341 LWK 343 (433)
T ss_pred eee
Confidence 443
No 162
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.8e-10 Score=115.38 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=121.8
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--------CCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 004203 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG 139 (768)
Q Consensus 71 ~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~--------~L~g---H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg 139 (768)
+.++..-.-.+-.+++++.|++|++||++-. .+.+ ....|.+++..|.|++|++|..|....+||++.+
T Consensus 184 ghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~ 263 (350)
T KOG0641|consen 184 GHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG 263 (350)
T ss_pred ccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence 3444444446778889999999999999743 1221 2357999999999999999999999999999999
Q ss_pred eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC---c--EEEEecCCCCeEEEEEcCCCCEEEEEECC-e
Q 004203 140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---E--CIGSRDFYRPIASIAFHASGELLAVASGH-K 213 (768)
Q Consensus 140 ~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg---~--~i~~l~h~~~V~svafSPDG~~LatgSdd-~ 213 (768)
+.+..|..|...|+++.|+| ...++++++.|..|++-|++.. + .+..-.|...+-.+.|+|+.-.+++.+.+ +
T Consensus 264 r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 264 RMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred ceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence 99999999999999999999 9999999999999999999742 1 12223588889999999988767766655 4
Q ss_pred EEEEEcC
Q 004203 214 LYIWRYN 220 (768)
Q Consensus 214 I~IWDl~ 220 (768)
+.+|-+.
T Consensus 343 ~tlwa~~ 349 (350)
T KOG0641|consen 343 ATLWALN 349 (350)
T ss_pred EEEeccC
Confidence 9999764
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.27 E-value=1.2e-10 Score=128.43 Aligned_cols=174 Identities=16% Similarity=0.229 Sum_probs=143.8
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC----CCCCC-CCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEE-EecCC
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC----PLSPP-PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKV-LHGHR 149 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH-~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~ 149 (768)
-.....+|++++..|.|.+-...++ +|.-. ...|.-+.|++..+ +|.+++++|.|.+||+........ .+.|.
T Consensus 129 YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs 208 (673)
T KOG4378|consen 129 YNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS 208 (673)
T ss_pred ecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc
Confidence 3456788999999999999998876 34333 34567999999666 456889999999999987665543 46799
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP 228 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~ 228 (768)
.+...|+|+|.+..+|++.+.|+.|.+||+++.+....+....+...++|.++|.+|+.|+ .|+|..||++..+. +.
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~--Pv 286 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA--PV 286 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC--Cc
Confidence 9999999999888899999999999999999988888888888999999999999999998 56699999998775 33
Q ss_pred eEeecCCCCeEEEEEccCCCeEEEE
Q 004203 229 RIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 229 ~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
..+..|...|++|+|-|.- .++.-
T Consensus 287 ~v~sah~~sVt~vafq~s~-tvltk 310 (673)
T KOG4378|consen 287 AVRSAHDASVTRVAFQPSP-TVLTK 310 (673)
T ss_pred eEeeecccceeEEEeeecc-eeeec
Confidence 4566789999999998865 34443
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=3.6e-11 Score=134.44 Aligned_cols=173 Identities=14% Similarity=0.205 Sum_probs=139.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------C-
Q 004203 80 ARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------G- 139 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-------g- 139 (768)
....|+++++|+.|++|+++.. +|.+|.++|.|++..+++..+++|+.||+|+.|++.. .
T Consensus 305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence 4567999999999999999321 4779999999999999999999999999999995531 1
Q ss_pred --eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---------------------------------
Q 004203 140 --SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--------------------------------- 184 (768)
Q Consensus 140 --~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~--------------------------------- 184 (768)
.....|.||++.|+.+++|+ ....|++++.||+|++|+......
T Consensus 385 p~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~ 463 (577)
T KOG0642|consen 385 PSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGY 463 (577)
T ss_pred cchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccccc
Confidence 23467889999999999999 888899999999999998764332
Q ss_pred -----------EEEec--------CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEc
Q 004203 185 -----------IGSRD--------FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFH 244 (768)
Q Consensus 185 -----------i~~l~--------h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFS 244 (768)
+..+. ....+..+.++|.+.+.+++-.+. |+++|..++.... ....|...++++++.
T Consensus 464 ~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~---s~~a~~~svtslai~ 540 (577)
T KOG0642|consen 464 TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH---SMVAHKDSVTSLAID 540 (577)
T ss_pred ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch---heeeccceecceeec
Confidence 00000 012356688899988888877655 9999999887543 677889999999999
Q ss_pred cCCCeEEEEEee
Q 004203 245 PHAAPLLLTAEV 256 (768)
Q Consensus 245 PDG~~LlaS~sv 256 (768)
|+|.++++++..
T Consensus 541 ~ng~~l~s~s~d 552 (577)
T KOG0642|consen 541 PNGPYLMSGSHD 552 (577)
T ss_pred CCCceEEeecCC
Confidence 999988877653
No 165
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.1e-10 Score=128.05 Aligned_cols=167 Identities=13% Similarity=0.130 Sum_probs=137.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeCCCCeE
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSC 141 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~-------------~L~gH~~~VtslafSPD--G~~LaSgS~DgtVrVWDl~tg~~ 141 (768)
..+++..++++++||.|.+|++..- .+..|+-+|+++...+- ..+|+++|.|.++|+||+..|..
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence 5578999999999999999987521 46789999999999874 36899999999999999999998
Q ss_pred EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE----------------EEE-ecCCC--CeEEEEEcCC
Q 004203 142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC----------------IGS-RDFYR--PIASIAFHAS 202 (768)
Q Consensus 142 l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~----------------i~~-l~h~~--~V~svafSPD 202 (768)
+.++.- ...+.+++.+| .+..++.|+.+|.|.+.++..-.. +.. .+|.+ .|+|++.+-|
T Consensus 211 Llti~f-p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 211 LLTITF-PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred eEEEec-CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence 888764 45699999999 899999999999999988864321 111 24666 9999999999
Q ss_pred CCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCC
Q 004203 203 GELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA 248 (768)
Q Consensus 203 G~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~ 248 (768)
|..|++|+ |+++.|||+.+.+.++ .+..-.++|+.+.+.|--+
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~iR---tl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQCIR---TLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHHHH---HHhhhccccceeEeecccc
Confidence 99999999 5569999999988765 3333678899999977544
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.25 E-value=5.3e-10 Score=116.89 Aligned_cols=167 Identities=29% Similarity=0.398 Sum_probs=135.0
Q ss_pred EEEEEeC-CCeEEEEeCCC--C---CCCCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 83 GLASWVE-AESLHHLRPKY--C---PLSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 83 ~LvSgs~-DgsIrlWd~~t--~---~L~gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
.+...+. |+.+.+|+... . .+..|...|.++.|+|+++++++++. |+.+++|++.+++.+..+.+|...|.++
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 3444344 88999999986 2 57899999999999999999999886 9999999999988999999999999999
Q ss_pred EEccCCCC-EEEEEeCCCeEEEEECCCCcEEE-Ee-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEe
Q 004203 156 RFHPLNPT-IIASGSLDHEVRLWNASTAECIG-SR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIV 231 (768)
Q Consensus 156 afSP~dg~-lLaSgS~DgtVrLWDl~sg~~i~-~l-~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l 231 (768)
+|+| ++. ++++++.|+.|++||...+.... .+ .|.... ...|+|++.++++++.+ .+++||+...... ....
T Consensus 205 ~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~ 280 (466)
T COG2319 205 AFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL--LRTL 280 (466)
T ss_pred EEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE--EEEE
Confidence 9998 776 66666999999999999887777 34 355554 33899999888877754 4999999877641 1122
Q ss_pred ecCCCCeEEEEEccCCCeEEEE
Q 004203 232 LRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 232 ~~h~~~V~sVaFSPDG~~LlaS 253 (768)
..|...|.++.|+|++..+++.
T Consensus 281 ~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 281 SGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred ecCCccEEEEEECCCCCEEEEe
Confidence 5678999999999988877763
No 167
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.25 E-value=9.3e-11 Score=130.41 Aligned_cols=171 Identities=14% Similarity=0.229 Sum_probs=131.0
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCC--------CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC-----------
Q 004203 79 DARRGLASWVEAESLHHLRPKYCPL--------SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT----------- 138 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~~L--------~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~t----------- 138 (768)
.++..+..+-..|.|++.|....++ .-.+..|+++.|-| +...|+.+..+|.+++||.+-
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 4666777888888898888765421 12347899999999 556777788899999997631
Q ss_pred ---CeE--------------EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEc
Q 004203 139 ---GSC--------------LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFH 200 (768)
Q Consensus 139 ---g~~--------------l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafS 200 (768)
+.. +..+.--.+.|+..+|+| |+++||+.+.||.+||||..+.+.+...+ .-+...|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 111 111112245688899999 99999999999999999999877766654 45788999999
Q ss_pred CCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeC
Q 004203 201 ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (768)
Q Consensus 201 PDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svw 257 (768)
|||++|++|+.|. |.||.+..++.+. .-.+|+.+|..|+|.| ..++.+.|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVA---RGqGHkSWVs~VaFDp----ytt~~ee~ 392 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVA---RGQGHKSWVSVVAFDP----YTTSTEEW 392 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEE---eccccccceeeEeecc----cccccccc
Confidence 9999999999666 9999998887654 5678999999999998 34444444
No 168
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.25 E-value=6.7e-10 Score=113.00 Aligned_cols=141 Identities=18% Similarity=0.248 Sum_probs=99.0
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEeC--CCCeEEEEEe-cCCCCcEEEEEccCCCCEEEE--EeCCCeEE
Q 004203 111 IAAAFSPDGKTLASTHG----------DHTVKIIDC--QTGSCLKVLH-GHRRTPWVVRFHPLNPTIIAS--GSLDHEVR 175 (768)
Q Consensus 111 tslafSPDG~~LaSgS~----------DgtVrVWDl--~tg~~l~~l~-gH~g~V~sVafSP~dg~lLaS--gS~DgtVr 175 (768)
..+.|+++|++|+.-.. -+...+|.+ ... ....+. ...++|.+++|+| +++.|+. |..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccE
Confidence 46789999988764433 123444444 333 233332 2345799999999 7776544 44677999
Q ss_pred EEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC----CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203 176 LWNASTAECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (768)
Q Consensus 176 LWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd----d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Ll 251 (768)
|||++ ++.+..+. ...++.+.|+|+|++|++++- |.|.+||.++.+.+. ...| ..+..++|+|||++++
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~-~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEH-SDATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----cccc-CcEEEEEEcCCCCEEE
Confidence 99997 66666665 467789999999999999872 349999999766533 2233 4578999999999999
Q ss_pred EEEeeCCcC
Q 004203 252 LTAEVNDLD 260 (768)
Q Consensus 252 aS~svwdl~ 260 (768)
++...+.++
T Consensus 160 ta~t~~r~~ 168 (194)
T PF08662_consen 160 TATTSPRLR 168 (194)
T ss_pred EEEecccee
Confidence 887765444
No 169
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.24 E-value=7.5e-10 Score=112.63 Aligned_cols=112 Identities=16% Similarity=0.359 Sum_probs=91.4
Q ss_pred CCCCeEEEEECCCCCEEEEEe--CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC---CeEEEEECC
Q 004203 106 PPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD---HEVRLWNAS 180 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS--~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~D---gtVrLWDl~ 180 (768)
..+.|.+++|+|+|+.|++.. .+..|.+||++ ++.+..+. ...++.+.|+| +|++++.++.+ |.|.+||++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 345699999999999987654 46799999997 66666664 56788999999 99999987754 679999999
Q ss_pred CCcEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCC
Q 004203 181 TAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMR 222 (768)
Q Consensus 181 sg~~i~~l~h~~~V~svafSPDG~~LatgS-------dd~I~IWDl~t~ 222 (768)
+.+.+....|.. +..++|+|||++|++++ +++++||++...
T Consensus 134 ~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 134 KKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 988888877665 68999999999999886 345999998644
No 170
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.24 E-value=4e-10 Score=119.30 Aligned_cols=221 Identities=15% Similarity=0.187 Sum_probs=157.5
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC-CCC--eEEEEEe
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTG--SCLKVLH 146 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl-~tg--~~l~~l~ 146 (768)
...++..++.+.+...|.++..... +++.|...|++++|+|..+.|++|+.|..-++|.. +.+ +....+.
T Consensus 18 wn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl 97 (361)
T KOG1523|consen 18 WNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL 97 (361)
T ss_pred ecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE
Confidence 3456777888888888999887654 57899999999999999999999999999999998 333 4556667
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-----ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc-
Q 004203 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVAS-GHKLYIWRY- 219 (768)
Q Consensus 147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-----l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl- 219 (768)
.+.+.+++|.|+| .++.||+|+.-+.|.||-++...--.. ..+...|.+++|+|++-+|+.|+ |++.+++..
T Consensus 98 RiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 98 RINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred EeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence 7899999999999 999999999999999998876554322 23667899999999999999998 566777653
Q ss_pred ----CCCcccc-----CCe-----EeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEe
Q 004203 220 ----NMREETS-----SPR-----IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMA 285 (768)
Q Consensus 220 ----~t~~~~~-----~~~-----~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~ 285 (768)
+...... .|+ ......+.|..+.|+|+|..|+..+- +..+.+.
T Consensus 177 IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-----------------------ds~v~~~ 233 (361)
T KOG1523|consen 177 IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-----------------------DSTVSFV 233 (361)
T ss_pred eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-----------------------CCceEEe
Confidence 2221100 000 01133578999999999998865442 1234444
Q ss_pred cCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEec
Q 004203 286 GAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT 323 (768)
Q Consensus 286 d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~ 323 (768)
+...+.. .........+|++...|-.+..-+.++.+
T Consensus 234 da~~p~~--~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 234 DAAGPSE--RVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred ecCCCch--hccchhhccCCceeeEeecCCceeecCCC
Confidence 4333321 11111122477888888877777776433
No 171
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.23 E-value=9.4e-11 Score=122.56 Aligned_cols=169 Identities=18% Similarity=0.195 Sum_probs=134.6
Q ss_pred CCeEEEEeCCCC-------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCCCCc
Q 004203 90 AESLHHLRPKYC-------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTP 152 (768)
Q Consensus 90 DgsIrlWd~~t~-------------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~g~V 152 (768)
+..+|+|.+... +-..+..++++++|+. |-++|.+.|-|-+..|||++++. ....+-.|...|
T Consensus 120 ~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 120 SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV 199 (364)
T ss_pred cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence 557899988632 2335677899999999 88999999999999999999873 367778999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cC-CCCeEEEEEcCCC-CEEEEEEC--CeEEEEEcCCCccc
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DF-YRPIASIAFHASG-ELLAVASG--HKLYIWRYNMREET 225 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l---~h-~~~V~svafSPDG-~~LatgSd--d~I~IWDl~t~~~~ 225 (768)
+.++|.....+.||+.+.||.||+||++..+.-..+ .. ..+...++|+++. +++|+-.. .+|.|.|++....
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t- 278 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT- 278 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-
Confidence 999999866679999999999999999987654332 22 4577889999855 46776653 3499999998875
Q ss_pred cCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004203 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD 260 (768)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~ 260 (768)
....+..|...|+.++|.|....-+.+++ +||+.
T Consensus 279 -pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 279 -PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred -ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 34567889999999999998876666654 77775
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.23 E-value=4.8e-09 Score=113.91 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=116.8
Q ss_pred EEeCCCeEEEEeCCC-CCC-----CCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCC-CCeE--EEEEecCCCCcEEE
Q 004203 86 SWVEAESLHHLRPKY-CPL-----SPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQ-TGSC--LKVLHGHRRTPWVV 155 (768)
Q Consensus 86 Sgs~DgsIrlWd~~t-~~L-----~gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~-tg~~--l~~l~gH~g~V~sV 155 (768)
+...++.|.+|++.+ +++ ..+.+....++++||+++|++++. ++.|.+|+++ +++. +.... ..+....+
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i 85 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHI 85 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEE
Confidence 335688899999863 221 134466788999999999987754 8899999986 3432 22222 33456789
Q ss_pred EEccCCCCEEEEEeC-CCeEEEEECCC-Cc---EEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccC-
Q 004203 156 RFHPLNPTIIASGSL-DHEVRLWNAST-AE---CIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSS- 227 (768)
Q Consensus 156 afSP~dg~lLaSgS~-DgtVrLWDl~s-g~---~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~- 227 (768)
.|+| +++++++++. ++.|.+||+.+ +. .+..+........++|+|+|+++++++ ++.|.+||+++......
T Consensus 86 ~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 86 STDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 9999 8887777654 78999999974 32 233333334567789999999998777 35599999986432210
Q ss_pred --CeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcC
Q 004203 228 --PRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD 260 (768)
Q Consensus 228 --~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~ 260 (768)
...........+.+.|+|||++++++.. +|+++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 0011122355788999999998877654 55665
No 173
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.22 E-value=6.5e-10 Score=119.47 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=133.3
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEEe--CCCeEEEEe
Q 004203 65 KCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTH--GDHTVKIID 135 (768)
Q Consensus 65 ~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~-------L~gH~~~VtslafSPDG~~LaSgS--~DgtVrVWD 135 (768)
.|+..|...+.+.+-++++|+.+-++. |.++|+...+ ...+...+.++.++.++.+|+.-+ ..|.|.|||
T Consensus 81 ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred EEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 466667777777777899999888876 9999998773 235777788888888888998643 378999999
Q ss_pred CCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---CCCeEEEEEcCCCCEEEEEEC
Q 004203 136 CQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVASG 211 (768)
Q Consensus 136 l~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~sg~~i~~l~h---~~~V~svafSPDG~~LatgSd 211 (768)
+.+-+.+..+..|.+.+-+++|++ +|.+||++|..|+ ||++.+.+|+.+..+.- ...|.+++|+||+++|++.++
T Consensus 160 ~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 160 TINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred cccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 999999999999999999999999 9999999999995 89999999998888752 347889999999999998885
Q ss_pred -CeEEEEEcCCCc
Q 004203 212 -HKLYIWRYNMRE 223 (768)
Q Consensus 212 -d~I~IWDl~t~~ 223 (768)
++|+++.+.+..
T Consensus 239 TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 239 TETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEEEecccc
Confidence 559999987765
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1.8e-10 Score=122.68 Aligned_cols=181 Identities=17% Similarity=0.244 Sum_probs=136.2
Q ss_pred CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCeEEEEE--ecCC-CCc
Q 004203 82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVL--HGHR-RTP 152 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l--~gH~-g~V 152 (768)
..++.+...+.|+++|..++ ++++|+..++.+.|.. ....+++|+.||+|++||+++......+ .++. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 55777888899999999885 6889999999999988 4678999999999999999987655433 4444 345
Q ss_pred EEEEEccCCCCEEEEEeC----CCeEEEEECCCCcE-EEEe--cCCCCeEEEEEcCCC-CEEEEEECCe-EEEEEcCCCc
Q 004203 153 WVVRFHPLNPTIIASGSL----DHEVRLWNASTAEC-IGSR--DFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMRE 223 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~----DgtVrLWDl~sg~~-i~~l--~h~~~V~svafSPDG-~~LatgSdd~-I~IWDl~t~~ 223 (768)
.+++..- .+++++.|.. |-.|.+||++..+. ++.+ .|.+.|+++.|+|.. .+|++||-|+ |.+||+....
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 5555544 5677777653 56899999998766 5544 389999999999965 5888998555 9999998775
Q ss_pred cccCCeEeecCCCCeEEEEEccCC--CeEEEEE----eeCCcCCCC
Q 004203 224 ETSSPRIVLRTRRSLRAVHFHPHA--APLLLTA----EVNDLDSSE 263 (768)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPDG--~~LlaS~----svwdl~sg~ 263 (768)
..........+...|..+.|..++ +....+- .+|++..++
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 544344566678889999999998 5333332 166666554
No 175
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.21 E-value=6.8e-10 Score=122.83 Aligned_cols=170 Identities=14% Similarity=0.160 Sum_probs=134.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC--------------------------------------------CCCCCCCeEEEEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYCP--------------------------------------------LSPPPRSTIAAAF 115 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~--------------------------------------------L~gH~~~Vtslaf 115 (768)
....|++|..|..|..||-.+.+ ..+|.+....++.
T Consensus 297 r~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 297 RDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred cCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 34567789999999999964321 1268888999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeE
Q 004203 116 SPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA 195 (768)
Q Consensus 116 SPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~ 195 (768)
+|+..++++++.|+.+++|+ ..+.+.... -..++.++.|+| .+ .++.|...|...+.|.++...+.......+++
T Consensus 377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls 451 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLS 451 (626)
T ss_pred CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceE
Confidence 99999999999999999999 344444433 356788999999 66 99999999999999999977766655588999
Q ss_pred EEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 196 SIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 196 svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
++.|+|+|.+||+|+.|. |+||.+........... ..+..+|+.+.||+|++++.+-+.
T Consensus 452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-k~~gs~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-KCSGSPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-eecCceeEEeeecCCCceEEeccC
Confidence 999999999999999655 99999876654321111 123489999999999998876554
No 176
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.5e-09 Score=121.28 Aligned_cols=170 Identities=15% Similarity=0.092 Sum_probs=116.6
Q ss_pred cCCCEEEEEe---CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCC--eEEEEeCCCCeEEEEEecCC
Q 004203 79 DARRGLASWV---EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCLKVLHGHR 149 (768)
Q Consensus 79 d~g~~LvSgs---~DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSg-S~Dg--tVrVWDl~tg~~l~~l~gH~ 149 (768)
.+++.|+..+ .+..|.+|++.+++ +....+.+..+.|||||+.|+.. +.++ .|++||+++++..... .+.
T Consensus 208 PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~ 286 (429)
T PRK03629 208 PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGR 286 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCC
Confidence 4555555332 23468889987662 33344556678999999988865 3344 6999999988765444 344
Q ss_pred CCcEEEEEccCCCCEEEEEeCC-C--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSLD-H--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR 222 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~D-g--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d--~I~IWDl~t~ 222 (768)
..+....|+| |++.|++.+.+ + .|+++|+.+++...............|+|||++|++.+. + .|++||+.++
T Consensus 287 ~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 287 SNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 5677889999 88888777654 3 566668887766544444445667899999999988763 2 2899999877
Q ss_pred ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.... +.. ........|+|||+.|++++.
T Consensus 366 ~~~~----Lt~-~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 366 GVQV----LTD-TFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred CeEE----eCC-CCCCCCceECCCCCEEEEEEc
Confidence 5422 222 223456889999999888775
No 177
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=9.6e-10 Score=125.21 Aligned_cols=172 Identities=13% Similarity=0.144 Sum_probs=139.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE--EEEecCCCCcE
Q 004203 80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRRTPW 153 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~g~V~ 153 (768)
.+.+|+|.+-+|+|.-||+.+.+ +....+.|.+++.+|.+..++.|++||.++.++...++.. ..|.-.++.|.
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 78899999999999999998773 4466788999999999999999999998888888877654 34444568899
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-----cC----CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcc
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----DF----YRPIASIAFHASGELLAVASGHKLYIWRYNMREE 224 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-----~h----~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~ 224 (768)
++.|+| ++..++.|+.||.|++||+.++...... .. ..-|.++.|-.|+.++..-|.|.|++||...+..
T Consensus 159 slsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 159 SLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTL 237 (691)
T ss_pred EEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcch
Confidence 999999 9999999999999999999999876632 11 2235667777676544433467799999999987
Q ss_pred ccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 225 ~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.+ ....|...|.+++..+++.++++++-
T Consensus 238 iq---S~~~h~adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 238 IQ---SHSCHDADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred hh---hhhhhhcceeEEEEcCCCCeEEEccC
Confidence 66 45668899999999999988877664
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=4.1e-10 Score=125.42 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=118.9
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-ecCCCCcEEEEEccCC-CCEEEEEeCCCeEEEEE
Q 004203 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWN 178 (768)
Q Consensus 101 ~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~g~V~sVafSP~d-g~lLaSgS~DgtVrLWD 178 (768)
.+|.||++.|++++|+.||.+|++||+|-.+.|||.-..+.+..+ .||.+.|.++.|-|.. .+++++|..|+.|+|+|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 368999999999999999999999999999999999888877766 5899999999999854 44788999999999999
Q ss_pred CCCCcE----------EEEe-cCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCccccC-------CeEeecCCCCe
Q 004203 179 ASTAEC----------IGSR-DFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREETSS-------PRIVLRTRRSL 238 (768)
Q Consensus 179 l~sg~~----------i~~l-~h~~~V~svafSPDG-~~LatgS-dd~I~IWDl~t~~~~~~-------~~~l~~h~~~V 238 (768)
+...+. ...+ .|...|..++-.|++ ..+-+++ ||.|+-+|++....... ...+....-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 985221 1222 377888999999999 4555666 55599999987543210 00111122456
Q ss_pred EEEEEccCCCeEEEEEe
Q 004203 239 RAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 239 ~sVaFSPDG~~LlaS~s 255 (768)
.++..+|...++++.+.
T Consensus 204 k~ltisp~rp~~laVGg 220 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGG 220 (758)
T ss_pred eeeeecCCCCceEEecC
Confidence 89999999887766555
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.20 E-value=2.5e-10 Score=119.48 Aligned_cols=169 Identities=11% Similarity=0.160 Sum_probs=133.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEecC---
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVLHGH--- 148 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--- 148 (768)
+-..|.+.+-|.+..+||++++ +|..|.+.|++++|..++ +.||+.+.||.||+||++..+.-..+...
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 5678889999999999999985 477999999999999855 57899999999999999987655554322
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCC-eEEEEECCCCc-EEEEe-cCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCc
Q 004203 149 RRTPWVVRFHPLNPTIIASGSLDH-EVRLWNASTAE-CIGSR-DFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMRE 223 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS~Dg-tVrLWDl~sg~-~i~~l-~h~~~V~svafSPDG~-~LatgSdd~-I~IWDl~t~~ 223 (768)
..+...++|+++|.+++|+-..|. .|.|.|++... ++..+ .|...|+.++|.|... .|++++||. +.+||+...-
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 346777999999999999866554 79999999753 44444 6999999999999764 888888777 9999997653
Q ss_pred c--ccCCeEeecCCCCeEEEEEccCCC
Q 004203 224 E--TSSPRIVLRTRRSLRAVHFHPHAA 248 (768)
Q Consensus 224 ~--~~~~~~l~~h~~~V~sVaFSPDG~ 248 (768)
. ...|...-.....|+.++|++...
T Consensus 322 ~~~~~dPilay~a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 322 RENGEDPILAYTAGGEVNQIQWSSSQP 348 (364)
T ss_pred ccCCCCchhhhhccceeeeeeecccCC
Confidence 3 222333344577899999997544
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.20 E-value=4.8e-11 Score=137.65 Aligned_cols=177 Identities=16% Similarity=0.250 Sum_probs=134.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE
Q 004203 79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s 154 (768)
..+.+++++++|..+++|..++. ...||.+.|+.++.+.+..++++++.|..|++|-+.++..+..+.||++.|++
T Consensus 200 rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavta 279 (1113)
T KOG0644|consen 200 RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTA 279 (1113)
T ss_pred cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceee
Confidence 46889999999999999998876 57899999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEe---------c--------CCCCeEEEEEcCCC
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAE--------------CIGSR---------D--------FYRPIASIAFHASG 203 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~--------------~i~~l---------~--------h~~~V~svafSPDG 203 (768)
++|+| ..+.+.||++++||.+-.- .+..+ . ....+..++|....
T Consensus 280 iafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~ 354 (1113)
T KOG0644|consen 280 IAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL 354 (1113)
T ss_pred eccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccc
Confidence 99999 3488999999999987110 00000 0 00122234444433
Q ss_pred CEEEEEE------------CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe------eCCcCCCC
Q 004203 204 ELLAVAS------------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSE 263 (768)
Q Consensus 204 ~~LatgS------------dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s------vwdl~sg~ 263 (768)
-.+++.+ +..+.+|++-++.... ...+|...+..+.|||-...+..++. +||+..+.
T Consensus 355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred eEEEeccccccccceeeeeeeEeeeeecccchhhh---hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 3333333 2237888888886544 56678899999999998876766544 77776543
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.19 E-value=2.6e-10 Score=126.68 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=127.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEE
Q 004203 81 RRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVaf 157 (768)
...++.++.||.+.+.+-... ....|.+.|.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|+|++|
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 355778889999988876543 4678999999999999999999999999999999 556554555556678999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCC
Q 004203 158 HPLNPTIIASGSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTR 235 (768)
Q Consensus 158 SP~dg~lLaSgS~DgtVrLWDl~sg-~~i~~l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~ 235 (768)
.| +.+.++.+.. +.+.|--+... +.++...|.+-|.++.|++.+.++++|+.| +.++||..... .+....|.
T Consensus 154 ~p-~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----Lf~S~~~e 227 (737)
T KOG1524|consen 154 AP-NSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----LFTSAAEE 227 (737)
T ss_pred CC-CCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc----cccCChhc
Confidence 99 5555555443 35777777654 455666799999999999999999999966 59999976553 33455688
Q ss_pred CCeEEEEEccCCCe
Q 004203 236 RSLRAVHFHPHAAP 249 (768)
Q Consensus 236 ~~V~sVaFSPDG~~ 249 (768)
.+|++++|.|+-.+
T Consensus 228 y~ITSva~npd~~~ 241 (737)
T KOG1524|consen 228 YAITSVAFNPEKDY 241 (737)
T ss_pred cceeeeeeccccce
Confidence 99999999999443
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=8e-10 Score=125.17 Aligned_cols=169 Identities=15% Similarity=0.097 Sum_probs=114.3
Q ss_pred ecCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEe-CCCeE--EEEeCCCCeEEEEEecC
Q 004203 78 RDARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTH-GDHTV--KIIDCQTGSCLKVLHGH 148 (768)
Q Consensus 78 ~d~g~~LvSgs~D---gsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS-~DgtV--rVWDl~tg~~l~~l~gH 148 (768)
+.++..|+..+.+ ..|.+||+.+++ +....+....++|+|||++|+.++ .++.+ ++||+.+++. ..+..+
T Consensus 212 SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~ 290 (429)
T PRK01742 212 SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSG 290 (429)
T ss_pred cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccC
Confidence 3456666655433 369999998763 332333445789999999988765 57754 5557776664 455667
Q ss_pred CCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCC-cEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc
Q 004203 149 RRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETS 226 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~sg-~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~ 226 (768)
...+..+.|+| |++.|+.++ .++...||++... .....+.+.. ....|+|||++|++.+.+.+.+||+.++....
T Consensus 291 ~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~ 367 (429)
T PRK01742 291 AGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEV 367 (429)
T ss_pred CCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEE
Confidence 77788899999 787666554 5777788876432 2223333333 45789999999999888788889998875422
Q ss_pred CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+..+ .....+.|+|||++|++++.
T Consensus 368 ----lt~~-~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 368 ----LSST-FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred ----ecCC-CCCCCceECCCCCEEEEEEc
Confidence 2111 23456889999998888765
No 183
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.8e-09 Score=122.45 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=122.4
Q ss_pred cCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEE-EEeCCC--eEEEEeCCCCeEEEEEecCC
Q 004203 79 DARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDH--TVKIIDCQTGSCLKVLHGHR 149 (768)
Q Consensus 79 d~g~~LvSgs~---DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~La-SgS~Dg--tVrVWDl~tg~~l~~l~gH~ 149 (768)
.+++.|+..+. +..|.+||+.+++ +..+.+.+...+|+|||+.|+ +.+.++ .|++||+++++. ..+..+.
T Consensus 211 pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~ 289 (435)
T PRK05137 211 PNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSP 289 (435)
T ss_pred CCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCC
Confidence 45555655442 4579999998763 556777888999999999876 444444 588889988875 4455566
Q ss_pred CCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR 222 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d--~I~IWDl~t~ 222 (768)
+......|+| |++.|+..+. ++ .|++||+.+++..........+....|+|||+.|++.+. + .|.+||+..+
T Consensus 290 ~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 290 AIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 6677789999 8888777664 33 699999988776665555566777899999999988763 2 2888887654
Q ss_pred ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.. ........+..+.|+|||+.|+++..
T Consensus 369 ~~-----~~lt~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 369 GE-----RILTSGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred ce-----EeccCCCCCCCCeECCCCCEEEEEEc
Confidence 32 12222345778899999998887764
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=2.9e-10 Score=122.27 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=132.7
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC------CeEEEEEe-cCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEV 174 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t------g~~l~~l~-gH~g~V~sVafSP~dg~lLaSgS~DgtV 174 (768)
.+.+|.+.|+++.||.++++|++|+.|..+++|+++. .+++.... .|...|.+++|.- ...++++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 4679999999999999999999999999999999853 34454443 3557899999998 88899999999999
Q ss_pred EEEECCCCcEEEEecCCC---CeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203 175 RLWNASTAECIGSRDFYR---PIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL 250 (768)
Q Consensus 175 rLWDl~sg~~i~~l~h~~---~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L 250 (768)
.+-|+++.+.+..+.|.. .|+.+.-+|..+.|++.++++ |.+||.+.......++....-......+.|+|-...|
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999999998887665 899999999988888888766 9999998877544455555557788999999998878
Q ss_pred EEEEe------eCCcCC
Q 004203 251 LLTAE------VNDLDS 261 (768)
Q Consensus 251 laS~s------vwdl~s 261 (768)
+++.+ +||++.
T Consensus 210 i~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRM 226 (609)
T ss_pred EEeccccCCCCceeecc
Confidence 77665 777763
No 185
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=6.4e-09 Score=118.04 Aligned_cols=226 Identities=14% Similarity=0.168 Sum_probs=135.9
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCE--EE-EEeC--CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCC
Q 004203 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKT--LA-STHG--DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT 163 (768)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~--La-SgS~--DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~ 163 (768)
.|.+.|.+.. ++......+..-+|||||+. ++ +... ...|++.|+.+++..... ...+.....+|+| ||+
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSP-DG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSP-RKK 243 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECC-CCC
Confidence 4556665543 35556667788999999975 32 3322 346888899888654333 2334455679999 887
Q ss_pred EEEEEeC-CC----eEEEEECCCC---cEEEEecC-CCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeE
Q 004203 164 IIASGSL-DH----EVRLWNASTA---ECIGSRDF-YRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRI 230 (768)
Q Consensus 164 lLaSgS~-Dg----tVrLWDl~sg---~~i~~l~h-~~~V~svafSPDG~~LatgSd--d~--I~IWDl~t~~~~~~~~~ 230 (768)
.|+..+. ++ .+.+||+..+ +....... .......+|+|||+.|++.++ +. |+++++..... ....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEE
Confidence 7776553 22 3445777653 33334432 234467899999999988874 33 55555543221 1223
Q ss_pred eecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEE
Q 004203 231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS 310 (768)
Q Consensus 231 l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~ps 310 (768)
+......+....|||||++|++...... . ..+.+++...+....+... ......|.
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g----~----------------~~I~v~dl~~g~~~~Lt~~----~~~~~~p~ 377 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKG----V----------------RQICVYDLATGRDYQLTTS----PENKESPS 377 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCC----C----------------cEEEEEECCCCCeEEccCC----CCCccceE
Confidence 4444456778999999999887764211 0 1344444443333222211 11223689
Q ss_pred EecCCCEEEEEecCCCCCcceEEeccCCCceeeeec
Q 004203 311 FVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLT 346 (768)
Q Consensus 311 FSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~~ 346 (768)
|+|||+.|++...+.. ...++..++++...++++.
T Consensus 378 wSpDG~~L~f~~~~~g-~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 378 WAIDSLHLVYSAGNSN-ESELYLISLITKKTRKIVI 412 (428)
T ss_pred ECCCCCEEEEEECCCC-CceEEEEECCCCCEEEeec
Confidence 9999999998755432 3566777777766665553
No 186
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.18 E-value=2.2e-10 Score=125.52 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=126.5
Q ss_pred CCCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeCCCC----eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203 103 LSPPPRSTIAAAFSPDG--KTLASTHGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (768)
Q Consensus 103 L~gH~~~VtslafSPDG--~~LaSgS~DgtVrVWDl~tg----~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL 176 (768)
.+-+.+.|++++|+|.. +++++|..-|+|-+||+.+. ..+..+..|.++|.++.|+|.+...+++.|.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 45689999999999943 68889999999999999532 3457778899999999999988999999999999999
Q ss_pred EECCCCcEEEE--ec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203 177 WNASTAECIGS--RD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (768)
Q Consensus 177 WDl~sg~~i~~--l~-h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla 252 (768)
-|++.+..... .. ....+.++.|+.+...++++.+ |...+||+++.+... ..+.-|...|.+|+++|-..++++
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~--~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY--ENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc--hhhhhhhcccceeecCCCCchhee
Confidence 99987643322 22 3446778889888887777764 569999999987632 345567789999999999999988
Q ss_pred EEe------eCCcCC
Q 004203 253 TAE------VNDLDS 261 (768)
Q Consensus 253 S~s------vwdl~s 261 (768)
+++ +||++.
T Consensus 340 T~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQ 354 (498)
T ss_pred ecccCcceeeeehhh
Confidence 876 777764
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=7e-10 Score=113.79 Aligned_cols=165 Identities=21% Similarity=0.230 Sum_probs=125.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCC------------CCCCCC-----CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 004203 81 RRGLASWVEAESLHHLRPKYC------------PLSPPP-----RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK 143 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~------------~L~gH~-----~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~ 143 (768)
...|++++. |.|+-|..... +..-|. ..|+++-..|..+-++.++.|+.++-||+++|+..+
T Consensus 72 d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence 445555544 88888875422 122233 258999999988888888899999999999999999
Q ss_pred EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-----------CeEEEEEcCCCCEEEEEECC
Q 004203 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-----------PIASIAFHASGELLAVASGH 212 (768)
Q Consensus 144 ~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~-----------~V~svafSPDG~~LatgSdd 212 (768)
.++||++.|.++.--. ....+++|+.||++||||.++++++..++... .| .+..-+..+|++|++-
T Consensus 151 ~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp 227 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGP 227 (325)
T ss_pred EEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCC
Confidence 9999999999988744 45678999999999999999999988865221 23 3444567799998888
Q ss_pred eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 213 ~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
++.+|.++..+... ++.-...|..+.|-.| .+++.+.
T Consensus 228 ~lslwhLrsse~t~----vfpipa~v~~v~F~~d--~vl~~G~ 264 (325)
T KOG0649|consen 228 KLSLWHLRSSESTC----VFPIPARVHLVDFVDD--CVLIGGE 264 (325)
T ss_pred ceeEEeccCCCceE----EEecccceeEeeeecc--eEEEecc
Confidence 89999999987644 4445677888889654 3566554
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.17 E-value=5.7e-10 Score=116.71 Aligned_cols=147 Identities=16% Similarity=0.255 Sum_probs=116.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE-EEEEe-----cCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEE
Q 004203 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-LKVLH-----GHRRTPWVVRFHP-LNPTIIASGSLDHEVRLW 177 (768)
Q Consensus 105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~-l~~l~-----gH~g~V~sVafSP-~dg~lLaSgS~DgtVrLW 177 (768)
.+-+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+. +++...++-+|+| .+++.+++ ..|++++.|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEE
Confidence 4666899999999999998776 78999999988765 33332 3566778889999 45666665 458899999
Q ss_pred ECCCCcEEEEe--cCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 178 NASTAECIGSR--DFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 178 Dl~sg~~i~~l--~h~~~V~svafSPDG~-~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
|+++.++...+ .|...|..+.|+|+-+ +|++++|++ |+|||.++.+. ....+.+|..+|++|.|+|....|+.+
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccceEEEe
Confidence 99988776665 4778899999999987 556666555 99999998776 345678899999999999988777776
Q ss_pred Ee
Q 004203 254 AE 255 (768)
Q Consensus 254 ~s 255 (768)
++
T Consensus 277 ~~ 278 (370)
T KOG1007|consen 277 GG 278 (370)
T ss_pred cC
Confidence 64
No 189
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=3.2e-09 Score=120.36 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=118.0
Q ss_pred cCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEE-EEeCCC--eEEEEeCCCCeEEEEEecCC
Q 004203 79 DARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDH--TVKIIDCQTGSCLKVLHGHR 149 (768)
Q Consensus 79 d~g~~LvSgs~---DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~La-SgS~Dg--tVrVWDl~tg~~l~~l~gH~ 149 (768)
.++..|+..+. ...|.+||+.+++ +..+.+...+++|+|||+.|+ +.+.++ .|++||+.+++. ..+..+.
T Consensus 213 pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~ 291 (433)
T PRK04922 213 PDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHF 291 (433)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCC
Confidence 34555665543 3468999987663 444555566899999999876 444444 699999998875 4455555
Q ss_pred CCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-C---eEEEEEcCCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIWRYNMR 222 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d---~I~IWDl~t~ 222 (768)
.....++|+| |++.|++++. ++ .|+++|+.+++..............+|+|||++|+..+. + .|.+||+.++
T Consensus 292 ~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 292 GIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 5566789999 8887777664 44 488888888776554433344557899999999988763 2 2999999776
Q ss_pred ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+... + .+........|+|||++++++..
T Consensus 371 ~~~~----L-t~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 371 SVRT----L-TPGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CeEE----C-CCCCCCCCceECCCCCEEEEEEe
Confidence 5421 2 23234557799999998887765
No 190
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.5e-08 Score=114.88 Aligned_cols=211 Identities=10% Similarity=0.051 Sum_probs=136.7
Q ss_pred CCeEEEEECCCCCE-EEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEE-EeCC--CeEEEEECC
Q 004203 108 RSTIAAAFSPDGKT-LASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS-GSLD--HEVRLWNAS 180 (768)
Q Consensus 108 ~~VtslafSPDG~~-LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaS-gS~D--gtVrLWDl~ 180 (768)
+.+....|+|||+. ++..+. +..|+++|+.+++...... ..+......|+| |++.++. .+.+ ..|+++|+.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 37789999999985 665444 3579999999987655543 445566678999 7765554 4434 479999998
Q ss_pred CCcEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEee
Q 004203 181 TAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEV 256 (768)
Q Consensus 181 sg~~i~~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~sv 256 (768)
+++...............|+|||+.|+..++. .|+++|+.+++... +..... ....|||||++++.+...
T Consensus 266 ~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r----lt~~g~--~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 266 TKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ----VVFHGK--NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe----CccCCC--cCceECCCCCEEEEEEcC
Confidence 88766554444434456899999999998853 28999998776533 111111 124899999999888753
Q ss_pred CCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEecc
Q 004203 257 NDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSL 336 (768)
Q Consensus 257 wdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~ 336 (768)
.+-.... + ...+.+.+...+....|.... ..-.|.|||||+.|++.... .-.+.+...++
T Consensus 340 ~~~~~~~---------~-----~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l 399 (419)
T PRK04043 340 TNNEFGK---------N-----TFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL-GNQSALGIIRL 399 (419)
T ss_pred CCcccCC---------C-----CcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc-CCcEEEEEEec
Confidence 2211000 0 123455554444332222210 11259999999999998654 33346788888
Q ss_pred CCCceeeeec
Q 004203 337 RSSSSVRLLT 346 (768)
Q Consensus 337 ~ss~~~rl~~ 346 (768)
++....+|+.
T Consensus 400 ~g~~~~~l~~ 409 (419)
T PRK04043 400 NYNKSFLFPL 409 (419)
T ss_pred CCCeeEEeec
Confidence 8877776764
No 191
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.17 E-value=2.9e-10 Score=129.50 Aligned_cols=188 Identities=20% Similarity=0.327 Sum_probs=135.4
Q ss_pred ecCCcceeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCC
Q 004203 58 LLGETARKCSGSFSQIFEAGRDARRGLASWVEAE-----SLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGD 128 (768)
Q Consensus 58 ~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~Dg-----sIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~D 128 (768)
+|...-..+..-+.....+.+..+..+++..... .|++|+..+- .+.+|.-.|+-++|||||++|++.+.|
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 3443333333333334455556677777776544 4899998754 589999999999999999999999999
Q ss_pred CeEEEEeCCCCe----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC--cEEEE---ecCCCCeEEEEE
Q 004203 129 HTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGS---RDFYRPIASIAF 199 (768)
Q Consensus 129 gtVrVWDl~tg~----~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg--~~i~~---l~h~~~V~svaf 199 (768)
.++.+|...... ....++.|+.-|++..|+| ++.+++++|+|++|++|..... +.+.. .++...|+.++|
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~ 672 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY 672 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence 999999875432 1234688999999999999 9999999999999999999887 44333 467889999999
Q ss_pred cCC-----CCEEEEEE-CCeEEEEEcCCCcccc---------CCeEeecCCCCeEEEEEccC
Q 004203 200 HAS-----GELLAVAS-GHKLYIWRYNMREETS---------SPRIVLRTRRSLRAVHFHPH 246 (768)
Q Consensus 200 SPD-----G~~LatgS-dd~I~IWDl~t~~~~~---------~~~~l~~h~~~V~sVaFSPD 246 (768)
.|- +..+++|- .|.|.+|......... .......+...|+.+.|.|.
T Consensus 673 ~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 673 LPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred eccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence 872 22556666 4669999865221100 00112234577899999986
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.16 E-value=8.7e-09 Score=107.74 Aligned_cols=175 Identities=27% Similarity=0.410 Sum_probs=134.7
Q ss_pred EEecCCCEEEEEeC-CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEE-EEecC
Q 004203 76 AGRDARRGLASWVE-AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLK-VLHGH 148 (768)
Q Consensus 76 a~~d~g~~LvSgs~-DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~-~l~gH 148 (768)
.....+..++.+.. |+.+++|+.... .+.+|...|.+++|+|++. .+++++.|+.|++||...+.... .+.+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~ 241 (466)
T COG2319 162 AFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241 (466)
T ss_pred EECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence 33445557777775 999999999863 4677999999999999998 55666999999999999888887 68888
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l-~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~ 225 (768)
...+ ...|+| ++.++++++.|+.+++||+..... ...+ .|...+.++.|+|++..+++++.+. +.+||..+....
T Consensus 242 ~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 242 SDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319 (466)
T ss_pred Ccce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence 8875 448999 668888999999999999997664 4443 6788999999999888888866445 999988877653
Q ss_pred cCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 226 SSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
... ....|...+..+.|.+++..++.+
T Consensus 320 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 320 SSL-TLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred EEe-eecccCCceEEEEECCCCCEEEEe
Confidence 311 123566679999994332444444
No 193
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.15 E-value=5.7e-10 Score=118.17 Aligned_cols=180 Identities=16% Similarity=0.240 Sum_probs=133.4
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCCCC------CCC---CeEEEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEE--EE-
Q 004203 79 DARRGLASWVEAESLHHLRPKYCPLSP------PPR---STIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCLK--VL- 145 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~~L~g------H~~---~VtslafSPDG~~LaSgS~DgtVrVWDl-~tg~~l~--~l- 145 (768)
.....+++.+.+..|++||+.+++++. |-. ...+++|+|||.+|+.| ....|++||+ +.|.... ..
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence 355667777889999999999987653 333 35799999999999854 6679999998 5554221 11
Q ss_pred ----ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE--CCeEEEEE
Q 004203 146 ----HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS--GHKLYIWR 218 (768)
Q Consensus 146 ----~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS--dd~I~IWD 218 (768)
.+..+-+.+++|+|.+.+.++.|+.-..+-||.-..+.+...+ +|.+.|+-+.|++||+.|.+|+ +++|..||
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 1335678899999988889999999999888888887777765 6999999999999999999998 57799999
Q ss_pred cCCCccccCCeEeecCCC-CeEE--EEEccCCCeEEEEE-----eeCCcCC
Q 004203 219 YNMREETSSPRIVLRTRR-SLRA--VHFHPHAAPLLLTA-----EVNDLDS 261 (768)
Q Consensus 219 l~t~~~~~~~~~l~~h~~-~V~s--VaFSPDG~~LlaS~-----svwdl~s 261 (768)
++..... ...+..|.. .-.. ....|+|++|+++. .+||++.
T Consensus 280 iR~~~~p--v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 280 IRYSRDP--VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ehhccch--hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 9987652 223334433 2223 34568888666542 2777664
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.15 E-value=2.8e-10 Score=128.64 Aligned_cols=138 Identities=23% Similarity=0.366 Sum_probs=117.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR 188 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l 188 (768)
.|+.++|-|||..|+.+.+| .+.+||...|..+.++++|...|++++|+. ||+.++||+.|+.|.+|.-+- +-+...
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~kl-EG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKL-EGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccc-cceeee
Confidence 89999999999999887765 799999999999999999999999999999 999999999999999998542 233446
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 189 ~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
.|.+.|.|+.|+|-...|++++=...-+|......... ......+.+.+|..||++++.+-
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-----~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-----HKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-----hhhheeEEEeeecCCCcEEEEec
Confidence 79999999999999999999998888889876554321 22345788999999999887764
No 195
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.14 E-value=1.9e-10 Score=130.94 Aligned_cols=144 Identities=21% Similarity=0.220 Sum_probs=120.1
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL 176 (768)
+|.||...|++++.||+|+++|+++. ...|++|+..+...+..+.+|.-.|+.++||| |+++|+++++|.++.|
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSL 598 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEe
Confidence 46799999999999999999999976 34699999999988889999999999999999 9999999999999999
Q ss_pred EECCCCcEEE-----EecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC-CeEeecCCCCeEEEEEccC
Q 004203 177 WNASTAECIG-----SRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS-PRIVLRTRRSLRAVHFHPH 246 (768)
Q Consensus 177 WDl~sg~~i~-----~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~-~~~l~~h~~~V~sVaFSPD 246 (768)
|......... .-.|..-|.++.|+|++++++++|.|+ |++|.......... .+....+...|++++|.|-
T Consensus 599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecc
Confidence 9986433211 234788899999999999999999766 99999877632111 2245667889999999873
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.14 E-value=7.1e-10 Score=123.27 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=129.2
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 79 DARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
.++..|++.++||.|++|.-... ++.....+|.|++|.|+...++.+-.+ .+.|=-+.-...+-..+.|.+-|.++
T Consensus 114 ~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHDGiiL~~ 192 (737)
T KOG1524|consen 114 PDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHDGLVLSL 192 (737)
T ss_pred CCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeecccccceeEEeccCcEEEEe
Confidence 47888999999999999997543 566778899999999987766655443 56666666566677789999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCC
Q 004203 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR 235 (768)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~ 235 (768)
.|++ ..+++++|+.|-..++||-........-.|+.+|++++|+|| +.++.++.+.+++= ....
T Consensus 193 ~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~--------------~p~~ 256 (737)
T KOG1524|consen 193 SWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFS--------------SPRV 256 (737)
T ss_pred ecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeeeeeec--------------CCCc
Confidence 9999 999999999999999999876555555678999999999999 88888887777711 1134
Q ss_pred CCeEEEEEccCCCeEEEEEe
Q 004203 236 RSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 236 ~~V~sVaFSPDG~~LlaS~s 255 (768)
+.|..++||+||..+..+++
T Consensus 257 GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred cceEEEEEcCCCceeecccc
Confidence 67899999999998776554
No 197
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.1e-10 Score=138.96 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=137.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC------CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC--
Q 004203 80 ARRGLASWVEAESLHHLRPKYCPLS------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR-- 150 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~L~------gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g-- 150 (768)
.+..|++|+.||.|.+||+..-+.. ...+.|.+++|+. ....|++++.+|.+.|||++..+.+..+..+.+
T Consensus 128 q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 128 QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 4558999999999999999864221 2456799999998 556789999999999999999888877776655
Q ss_pred CcEEEEEccCCCCEEEEEeCCC---eEEEEECCCC-cEEEEe-cCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCc
Q 004203 151 TPWVVRFHPLNPTIIASGSLDH---EVRLWNASTA-ECIGSR-DFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMRE 223 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~Dg---tVrLWDl~sg-~~i~~l-~h~~~V~svafSPDG-~~LatgS-dd~I~IWDl~t~~ 223 (768)
.+..+.|||++...++.++.|. .|.+||++.- .+++++ .|...|.++.|++.+ .+|++++ |++|.+|+..+++
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 3668999998888888887765 7999999863 455665 689999999999977 5666666 5569999999988
Q ss_pred cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
... .+.....++..+.|+|....+++.+.
T Consensus 288 vl~---~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 288 VLG---ELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred Eee---ecCCCCcceeeeeecCCCcchhhhhe
Confidence 655 45556789999999998876665554
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.13 E-value=1.8e-09 Score=114.45 Aligned_cols=148 Identities=17% Similarity=0.266 Sum_probs=120.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-
Q 004203 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST- 181 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s- 181 (768)
-.++|+|.+|++|+..+|.+-+...|.||..... +...+++.|...|+.|+|+| ..+.|++++.|..-++|....
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 3568999999999999999999999999987654 46789999999999999999 899999999999999999944
Q ss_pred CcE---EEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCC-eEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 182 AEC---IGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSP-RIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 182 g~~---i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~-~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
++- +..+.++...+++.|+|.++.++++++.+ |.||-+.....-... .....++..|.++.|+|++-.+++++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 332 23356899999999999999999999776 889888766542200 11223467899999999998665554
No 199
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=6.6e-09 Score=117.71 Aligned_cols=170 Identities=21% Similarity=0.135 Sum_probs=113.2
Q ss_pred cCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEE-EeCCCeEEEE--eCCCCeEEEEEecCC
Q 004203 79 DARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDHTVKII--DCQTGSCLKVLHGHR 149 (768)
Q Consensus 79 d~g~~LvSgs~---DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaS-gS~DgtVrVW--Dl~tg~~l~~l~gH~ 149 (768)
.+++.|+..+. ...|.+||+.+++ +....+.+...+|+|||+.|+. .+.++...|| |+.+++ ...+..+.
T Consensus 205 PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~ 283 (427)
T PRK02889 205 PDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS 283 (427)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC
Confidence 45556655443 2359999998763 4445566778999999998874 5667765555 565555 45555555
Q ss_pred CCcEEEEEccCCCCEEEEEeC-CCeEEEE--ECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-C---eEEEEEcCCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSL-DHEVRLW--NASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIWRYNMR 222 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~-DgtVrLW--Dl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d---~I~IWDl~t~ 222 (768)
+......|+| |++.|+..+. ++...|| |+.+++..............+|+|||++|+..+. + .|++||+.++
T Consensus 284 ~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 284 GIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 5566789999 8887776654 4544555 5556654443333334456889999999988773 2 3999999877
Q ss_pred ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+... +.. ......+.|+|||+.|+++..
T Consensus 363 ~~~~----lt~-~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 363 QVTA----LTD-TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CeEE----ccC-CCCccCceECCCCCEEEEEEe
Confidence 5422 222 233467899999999988775
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.10 E-value=1.1e-08 Score=116.05 Aligned_cols=204 Identities=18% Similarity=0.191 Sum_probs=136.7
Q ss_pred CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEcc------
Q 004203 90 AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP------ 159 (768)
Q Consensus 90 DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP------ 159 (768)
+..+.++|...+ ++++|++.|++++|+.||+.|++|+.|..|.+|+-+-.-.+ .+ .|+..|.|+.|+|
T Consensus 32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~La 109 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLA 109 (1081)
T ss_pred CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhh
Confidence 567888998866 68999999999999999999999999999999985432111 11 3555555555544
Q ss_pred --------------------------------CCCCEEEEEeCCCeEEEEECCCCcEEEEe----cCCCCeEEEEEcCCC
Q 004203 160 --------------------------------LNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASG 203 (768)
Q Consensus 160 --------------------------------~dg~lLaSgS~DgtVrLWDl~sg~~i~~l----~h~~~V~svafSPDG 203 (768)
+||.+++-|-.||+|.|-+-. +++...+ +.+.+|.+++|+|..
T Consensus 110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred hcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCC
Confidence 288999999999999988654 4433333 256799999999964
Q ss_pred C-----EEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccC
Q 004203 204 E-----LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRY 277 (768)
Q Consensus 204 ~-----~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~ 277 (768)
. .+++..-+. +.++.+....... ...-.-...++++.++|.+++.+++...+. +.+-.|.
T Consensus 189 g~G~~di~aV~DW~qTLSFy~LsG~~Igk----~r~L~FdP~CisYf~NGEy~LiGGsdk~L~-------~fTR~Gv--- 254 (1081)
T KOG1538|consen 189 GEGRNDILAVADWGQTLSFYQLSGKQIGK----DRALNFDPCCISYFTNGEYILLGGSDKQLS-------LFTRDGV--- 254 (1081)
T ss_pred CCCccceEEEEeccceeEEEEecceeecc----cccCCCCchhheeccCCcEEEEccCCCceE-------EEeecCe---
Confidence 3 566655443 7777665432211 111234567899999999999988755443 1111111
Q ss_pred CCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCC
Q 004203 278 PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDS 327 (768)
Q Consensus 278 p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~ 327 (768)
.+ -+ .......+|.+...|+++.++++..|.+.
T Consensus 255 -----rL-----------GT-vg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 255 -----RL-----------GT-VGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred -----EE-----------ee-ccccceeEEEEEEccCCceEEEEEccCee
Confidence 11 10 11133457789999999999998666543
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.09 E-value=2e-08 Score=109.08 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=118.1
Q ss_pred EEEEecCCCEEEEEe-CCCeEEEEeCCCC-CC------CCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEE
Q 004203 74 FEAGRDARRGLASWV-EAESLHHLRPKYC-PL------SPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKV 144 (768)
Q Consensus 74 ~~a~~d~g~~LvSgs-~DgsIrlWd~~t~-~L------~gH~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~ 144 (768)
..+...+++.+++.. .++.|.+|++... .+ ..+.....+++|+|||+++++++ .++.|.+||+++...+..
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 344445666666554 4888999998632 11 12334578899999999986555 579999999977332211
Q ss_pred -----Ee-cCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEECCC--CcE--EEEec-C------CCCeEEEEEcCCCCEE
Q 004203 145 -----LH-GHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNAST--AEC--IGSRD-F------YRPIASIAFHASGELL 206 (768)
Q Consensus 145 -----l~-gH~g~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~s--g~~--i~~l~-h------~~~V~svafSPDG~~L 206 (768)
+. ......+.+.|+| ++++++++.. +++|.+||++. ++. +..+. . ......+.|+|+|++|
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 11 1234467899999 8888877765 89999999973 332 22221 1 1123358899999999
Q ss_pred EEEEC--CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 207 AVASG--HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 207 atgSd--d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+++.. +.|.+|+++..................+.+.|+|||++|+++..
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 99863 45999999665421111111112345678999999998888764
No 202
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1.7e-09 Score=115.32 Aligned_cols=153 Identities=16% Similarity=0.230 Sum_probs=123.1
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCC-CCeEEEEECCCCCEEEEEeC----CCeEEEEeCCCCe
Q 004203 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPP-RSTIAAAFSPDGKTLASTHG----DHTVKIIDCQTGS 140 (768)
Q Consensus 72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~-~~VtslafSPDG~~LaSgS~----DgtVrVWDl~tg~ 140 (768)
.+.+...+....+.+++.||.|++||++.. ....|. .+..+++.+..++.+++|.. |-.|.+||++..+
T Consensus 75 ~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q 154 (376)
T KOG1188|consen 75 GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ 154 (376)
T ss_pred ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc
Confidence 455666668889999999999999999865 244565 56788888878889988865 7889999998876
Q ss_pred E-EEE-EecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE----EEEecCCCCeEEEEEcCCC--CEEEEEECC
Q 004203 141 C-LKV-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC----IGSRDFYRPIASIAFHASG--ELLAVASGH 212 (768)
Q Consensus 141 ~-l~~-l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~----i~~l~h~~~V~svafSPDG--~~LatgSdd 212 (768)
. +.. +..|...|++++|+|.+.++|++||.||-|.|||++.... ..++.+...|.++.|..++ ++....-.+
T Consensus 155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~E 234 (376)
T KOG1188|consen 155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHME 234 (376)
T ss_pred chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccC
Confidence 5 443 4679999999999999999999999999999999986532 3446678889999999988 544444467
Q ss_pred eEEEEEcCCCcc
Q 004203 213 KLYIWRYNMREE 224 (768)
Q Consensus 213 ~I~IWDl~t~~~ 224 (768)
+..+|++..+..
T Consensus 235 tf~~~ele~~~~ 246 (376)
T KOG1188|consen 235 TFAIYELEDGSE 246 (376)
T ss_pred ceeEEEccCCCh
Confidence 799999987764
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=4.5e-09 Score=113.33 Aligned_cols=176 Identities=14% Similarity=0.090 Sum_probs=132.9
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC---------CCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC---------PLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~---------~L~--gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l 145 (768)
.+..++.|++|+.|..+++|+.+.- .++ .|...|.|++|....+++++|..+++|.+.|+++.+.+..+
T Consensus 64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~ 143 (609)
T KOG4227|consen 64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA 143 (609)
T ss_pred eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee
Confidence 3456999999999999999998632 133 45678999999999999999999999999999999888777
Q ss_pred ec--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-E---EEEecCCCCeEEEEEcCCCC-EEEEEE-CCeEEEE
Q 004203 146 HG--HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-C---IGSRDFYRPIASIAFHASGE-LLAVAS-GHKLYIW 217 (768)
Q Consensus 146 ~g--H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~-~---i~~l~h~~~V~svafSPDG~-~LatgS-dd~I~IW 217 (768)
.. ..+.|+.+..+| ..+.|++.+.++.|.+||.+... . +...........+-|+|... +|++.+ .+++.+|
T Consensus 144 ~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~ 222 (609)
T KOG4227|consen 144 NENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVF 222 (609)
T ss_pred cccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence 42 235899999999 78899999999999999998754 2 22223556788899999776 455555 4569999
Q ss_pred EcCCCccccCCe----EeecCCCCeEEEEEccCCCeEEEE
Q 004203 218 RYNMREETSSPR----IVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 218 Dl~t~~~~~~~~----~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
|.+......... .+......-.++.|+|+|..+++-
T Consensus 223 D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 223 DRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred eeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 998875421000 011112234678899999987654
No 204
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.07 E-value=3.9e-09 Score=110.58 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=125.5
Q ss_pred eCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCC-------CeEEEEeCCCC---------eEEE
Q 004203 88 VEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGD-------HTVKIIDCQTG---------SCLK 143 (768)
Q Consensus 88 s~DgsIrlWd~~t~-------~L~gH~~~VtslafSP-DG~~LaSgS~D-------gtVrVWDl~tg---------~~l~ 143 (768)
.+|..|.+.+.+.. .|.-|.+.|..++-+| |.+.|+++-+| ..+.||.+... +++.
T Consensus 37 K~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 37 KEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred CCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 46778888777644 3667889999999999 66777776552 35789987542 2333
Q ss_pred EEe-cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe------cCCCCeEEEEEcC--CCCEEEEEECCe
Q 004203 144 VLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR------DFYRPIASIAFHA--SGELLAVASGHK 213 (768)
Q Consensus 144 ~l~-gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l------~h~~~V~svafSP--DG~~LatgSdd~ 213 (768)
.+. .+-+.|.|+.|.| +++.+++-. |..|.+|++..+.. +..+ .+....++-+|+| ||..+++.++.+
T Consensus 117 ~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t 194 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST 194 (370)
T ss_pred cCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCc
Confidence 443 4456899999999 888888866 77899999997765 3332 2456778889998 889999999999
Q ss_pred EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 214 I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
++.||+++..... .....|...|+.+.|+|+-++++++++
T Consensus 195 l~~~D~RT~~~~~--sI~dAHgq~vrdlDfNpnkq~~lvt~g 234 (370)
T KOG1007|consen 195 LQFWDLRTMKKNN--SIEDAHGQRVRDLDFNPNKQHILVTCG 234 (370)
T ss_pred EEEEEccchhhhc--chhhhhcceeeeccCCCCceEEEEEcC
Confidence 9999999887643 233457889999999999999998886
No 205
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.7e-09 Score=121.70 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=82.9
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCC---CeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC
Q 004203 147 GHRRTPWVVRFHPLNPTIIASGSLD---HEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMR 222 (768)
Q Consensus 147 gH~g~V~sVafSP~dg~lLaSgS~D---gtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~ 222 (768)
.|...|..+.||. .|++|++...+ ..|.|.++.....+.-| ...+.+.++.|+|...+|++++...|+|||+..+
T Consensus 519 ~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq 597 (733)
T KOG0650|consen 519 KHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ 597 (733)
T ss_pred ecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH
Confidence 4566677777777 77777776554 36777777766655545 3567889999999999999999999999999887
Q ss_pred ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
..+. .+.....+|.+++.+|.|..|++++.
T Consensus 598 elvK---kL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 598 ELVK---KLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred HHHH---HHhcCCeeeeeeeecCCCCeEEEecC
Confidence 6654 55667789999999999999998876
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.4e-09 Score=118.57 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=113.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-
Q 004203 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD- 189 (768)
Q Consensus 111 tslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~- 189 (768)
..++|+.||..|++++.||++|||+..+...+..+..|.+.|.++.|+| |+++|++.+.| ..+|||+++|.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999999999999999888888888888999999999999 99999999999 89999999997766543
Q ss_pred --CCCCeEEEEEcCCC---CEEEEEE--C-CeEEEEEcCCCcccc--CCeEeecCCCCeEEEEEccCCCeEEEEEeeCCc
Q 004203 190 --FYRPIASIAFHASG---ELLAVAS--G-HKLYIWRYNMREETS--SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDL 259 (768)
Q Consensus 190 --h~~~V~svafSPDG---~~LatgS--d-d~I~IWDl~t~~~~~--~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl 259 (768)
.+..+..+.|+.|+ .+++.+. . ++|+.||+....... .........+.|.+++.++||++++.++...++
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 34467788898877 4444443 2 337777765443311 112223335689999999999988887764433
No 207
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.04 E-value=5.7e-09 Score=110.73 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=132.2
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCC-CC------CC-----CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeE
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPK-YC------PL-----SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC 141 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~-t~------~L-----~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~ 141 (768)
.....++..|+.| ....|+++|.. .+ .. .+..+-|.+++|+| +.+.++.++....+-||.-..+.+
T Consensus 164 L~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p 242 (406)
T KOG2919|consen 164 LQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP 242 (406)
T ss_pred EEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc
Confidence 3345677777766 45689999994 22 11 23467799999999 677999999999999999888899
Q ss_pred EEEEecCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEECCCC-cEEEEec-CCC---CeEEEEEcCCCCEEEEEE-CCeE
Q 004203 142 LKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTA-ECIGSRD-FYR---PIASIAFHASGELLAVAS-GHKL 214 (768)
Q Consensus 142 l~~l~gH~g~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~sg-~~i~~l~-h~~---~V~svafSPDG~~LatgS-dd~I 214 (768)
+..+-+|++.|+.++|++ +|+.|++|++ |-.|-.||++.. .++..+. |.+ .---+...|++++|++|+ +|.|
T Consensus 243 l~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V 321 (406)
T KOG2919|consen 243 LQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSV 321 (406)
T ss_pred eeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccE
Confidence 999999999999999999 8888888876 668999999864 3333332 222 222356678999999996 5569
Q ss_pred EEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 215 ~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
++||+++... .+.....+...++.++++|--. |++++
T Consensus 322 ~vwdlk~~gn--~~sv~~~~sd~vNgvslnP~mp-ilats 358 (406)
T KOG2919|consen 322 RVWDLKDLGN--EVSVTGNYSDTVNGVSLNPIMP-ILATS 358 (406)
T ss_pred EEEecCCCCC--cccccccccccccceecCcccc-eeeec
Confidence 9999988443 2335566788999999999855 44444
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=6.8e-09 Score=111.47 Aligned_cols=142 Identities=18% Similarity=0.337 Sum_probs=109.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec-CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC----
Q 004203 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---- 182 (768)
Q Consensus 108 ~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg---- 182 (768)
..+..++|++.-..|+++..|-.|++||-.. ++...++. ....|.+++|-|.....|+.|++.| |.||.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 3578899999777789999999999999766 55555543 3467999999998888888888876 889977531
Q ss_pred cE--------EEEec--CCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203 183 EC--------IGSRD--FYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL 250 (768)
Q Consensus 183 ~~--------i~~l~--h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L 250 (768)
.. ...+. .+.+|+++.|.+||..|++++-+. |.|||.+++.... ........+.-+.|||||.++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p---L~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP---LIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc---ccccCCCceeeEEEcCCCCEE
Confidence 11 11122 235899999999999999999443 9999999998754 223456788999999999988
Q ss_pred EEEE
Q 004203 251 LLTA 254 (768)
Q Consensus 251 laS~ 254 (768)
+++.
T Consensus 254 faAt 257 (445)
T KOG2139|consen 254 FAAT 257 (445)
T ss_pred EEec
Confidence 7765
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1.7e-08 Score=108.50 Aligned_cols=149 Identities=13% Similarity=0.182 Sum_probs=112.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CC
Q 004203 105 PPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TA 182 (768)
Q Consensus 105 gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-sg 182 (768)
+| ..|+++.|++||..+++++. |..|.|||.+++..+.....-.+.+.-+.||| |+++|+.+.-|+..++|+.. +.
T Consensus 194 gh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~w 271 (445)
T KOG2139|consen 194 GH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSW 271 (445)
T ss_pred CC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccc
Confidence 44 67999999999999999987 77899999999987766633455688899999 99999999999999999554 44
Q ss_pred cEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccC--------CeEe---------ecC----CCCeEEE
Q 004203 183 ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS--------PRIV---------LRT----RRSLRAV 241 (768)
Q Consensus 183 ~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~--------~~~l---------~~h----~~~V~sV 241 (768)
...+..-..+.|...+|+|+|++|.....+.-++|.+........ ...+ ... .+.+.++
T Consensus 272 t~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~l 351 (445)
T KOG2139|consen 272 TKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCL 351 (445)
T ss_pred eecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcccee
Confidence 444444456699999999999999888877755565533221100 0000 011 3578999
Q ss_pred EEccCCCeEEEEEe
Q 004203 242 HFHPHAAPLLLTAE 255 (768)
Q Consensus 242 aFSPDG~~LlaS~s 255 (768)
+|.|.|.++++.-.
T Consensus 352 awDpsGeyLav~fK 365 (445)
T KOG2139|consen 352 AWDPSGEYLAVIFK 365 (445)
T ss_pred eECCCCCEEEEEEc
Confidence 99999999988765
No 210
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.9e-08 Score=106.36 Aligned_cols=196 Identities=21% Similarity=0.261 Sum_probs=130.8
Q ss_pred CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC----CeEEEEEecCCCCcEEEEE-ccCCCCEEEEEeCCCeEEEEE
Q 004203 104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT----GSCLKVLHGHRRTPWVVRF-HPLNPTIIASGSLDHEVRLWN 178 (768)
Q Consensus 104 ~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t----g~~l~~l~gH~g~V~sVaf-SP~dg~lLaSgS~DgtVrLWD 178 (768)
.+|.+-|+++.|.+-|+.+|+|+.|++|+|||.+. ..+....+.|.+.|+.|.| +|.-|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47899999999999999999999999999999643 3567788999999999999 466789999999999999997
Q ss_pred CCCC--c-----EE--EE-ecCCCCeEEEEEcCC--CCEEEEEEC-CeEEEEEcCCCccccC----------CeEeecCC
Q 004203 179 ASTA--E-----CI--GS-RDFYRPIASIAFHAS--GELLAVASG-HKLYIWRYNMREETSS----------PRIVLRTR 235 (768)
Q Consensus 179 l~sg--~-----~i--~~-l~h~~~V~svafSPD--G~~LatgSd-d~I~IWDl~t~~~~~~----------~~~l~~h~ 235 (768)
-... + -+ .+ ....+.|+.+.|.|. |-.|++++. |.++||+.-....... +.....+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 6311 1 11 11 246779999999995 557888774 5599998765432110 00111245
Q ss_pred CCeEEEEEccCC---CeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCC-CCCCCCcccccCCCCCCceEEEE
Q 004203 236 RSLRAVHFHPHA---APLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAH-SSSHPGLAEEVPLITPPFLRPSF 311 (768)
Q Consensus 236 ~~V~sVaFSPDG---~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~-s~d~~~L~~~~~~~slpil~psF 311 (768)
....+|.|+|.. .+|++++.. +-..- ..+.++..+ .+..-......++..-|+...+|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e-~a~~~-----------------~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDE-DAPHL-----------------NKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred CcceEEeeccccccCceEEEEccc-CCccc-----------------cceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 667888898743 333333322 22111 112222211 12123333445567778888888
Q ss_pred ecCCCE
Q 004203 312 VRDDER 317 (768)
Q Consensus 312 SpDG~r 317 (768)
+|.-.+
T Consensus 232 APn~Gr 237 (361)
T KOG2445|consen 232 APNIGR 237 (361)
T ss_pred ccccCC
Confidence 888543
No 211
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=2.9e-08 Score=112.70 Aligned_cols=159 Identities=15% Similarity=0.137 Sum_probs=103.3
Q ss_pred eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCC---eEEEEEecCCCCcEEEEEccC
Q 004203 92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPL 160 (768)
Q Consensus 92 sIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~-----DgtVrVWDl~tg---~~l~~l~gH~g~V~sVafSP~ 160 (768)
.|.+.++..+ ++....+.....+|||||++|+..+. |-.+.+||+.++ +......++.+.....+|+|
T Consensus 212 ~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP- 290 (428)
T PRK01029 212 KIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP- 290 (428)
T ss_pred eEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-
Confidence 4666666655 34445556677899999999887653 323444777653 33344433334446689999
Q ss_pred CCCEEEEEe-CCCe--EEEEECCC--CcEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEe
Q 004203 161 NPTIIASGS-LDHE--VRLWNAST--AECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIV 231 (768)
Q Consensus 161 dg~lLaSgS-~Dgt--VrLWDl~s--g~~i~~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~~~~~~~~~l 231 (768)
||+.|+..+ .++. |+++++.. ++..........+....|+|||+.|++.+.. .|++||+.+++... +
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----L 366 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----L 366 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----c
Confidence 888777665 4664 55555542 2233233344567789999999999887632 39999998876432 3
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe
Q 004203 232 LRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 232 ~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
......+....|+|||+.|++++.
T Consensus 367 t~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 367 TTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred cCCCCCccceEECCCCCEEEEEEC
Confidence 333446778999999998887654
No 212
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=5.7e-08 Score=109.67 Aligned_cols=170 Identities=12% Similarity=0.013 Sum_probs=114.3
Q ss_pred cCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEE-EeCCC--eEEEEeCCCCeEEEEEecCC
Q 004203 79 DARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDH--TVKIIDCQTGSCLKVLHGHR 149 (768)
Q Consensus 79 d~g~~LvSgs~D---gsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaS-gS~Dg--tVrVWDl~tg~~l~~l~gH~ 149 (768)
.++..|+..+.+ ..|.+|++.+++ +....+.+....|+|||+.|+. .+.++ .|++||+++++.. .+..+.
T Consensus 208 pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~ 286 (430)
T PRK00178 208 PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP 286 (430)
T ss_pred CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence 455555544322 358888987663 3444455667999999998874 44444 6999999988754 455555
Q ss_pred CCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR 222 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d--~I~IWDl~t~ 222 (768)
.......|+| |++.++..+. ++ .|+++|+.+++...............|+|||++|+..+. + .|.+||+.++
T Consensus 287 ~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 287 AIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 5566789999 7776666553 33 688889988876544332333456789999999988873 2 2889999876
Q ss_pred ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+... +. .........|+|||+.++.+..
T Consensus 366 ~~~~----lt-~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 366 SVRI----LT-DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CEEE----cc-CCCCCCCceECCCCCEEEEEEe
Confidence 5422 22 2222335689999999888765
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.02 E-value=2e-08 Score=108.21 Aligned_cols=158 Identities=19% Similarity=0.214 Sum_probs=116.3
Q ss_pred CeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC---CCCcEEEEEccCCCCE
Q 004203 91 ESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH---RRTPWVVRFHPLNPTI 164 (768)
Q Consensus 91 gsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH---~g~V~sVafSP~dg~l 164 (768)
..+++.+.+..... .....|.++.++ .++|+++-.+. |+|||+++.+.+.++..- ...+..+.+++ ++.+
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~y 143 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCY 143 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CCce
Confidence 45677776544211 235578888887 45666666654 999999999998887543 33354455555 4557
Q ss_pred EEE-Ee-CCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEeec--CCCC
Q 004203 165 IAS-GS-LDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR--TRRS 237 (768)
Q Consensus 165 LaS-gS-~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~~l~~--h~~~ 237 (768)
++. ++ ..|.|.|||+.+-+.+..+ .|.+.+.+++|+++|.+||++++.+ ||++.+.+++... .+.. -...
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~---eFRRG~~~~~ 220 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY---EFRRGTYPVS 220 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee---eeeCCceeeE
Confidence 776 33 3579999999998887776 5999999999999999999999755 9999998887644 1211 1457
Q ss_pred eEEEEEccCCCeEEEEEe
Q 004203 238 LRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 238 V~sVaFSPDG~~LlaS~s 255 (768)
|.+++|+||+++|.++++
T Consensus 221 IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 221 IYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EEEEEECCCCCeEEEecC
Confidence 899999999998888776
No 214
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.02 E-value=2.6e-08 Score=111.20 Aligned_cols=170 Identities=18% Similarity=0.133 Sum_probs=118.4
Q ss_pred cCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCC--CeEEEEeCCCCeEEEEEecCC
Q 004203 79 DARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGD--HTVKIIDCQTGSCLKVLHGHR 149 (768)
Q Consensus 79 d~g~~LvSgs~D---gsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSg-S~D--gtVrVWDl~tg~~l~~l~gH~ 149 (768)
.+++.|+....+ ..|.+|++.+++ +..+.+.+.+++|+|||+.|+.. +.+ ..|++||+.+++.. .+..+.
T Consensus 199 pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~ 277 (417)
T TIGR02800 199 PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP 277 (417)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC
Confidence 345555544432 479999998763 44566677889999999987654 433 46999999887644 344455
Q ss_pred CCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMR 222 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~ 222 (768)
.......|+| +++.|+..+. ++ .|+++|+.+++..........+....|+|||++|+..+.+ .|.+||+.++
T Consensus 278 ~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 278 GIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 5555679999 8887776554 33 6889999888765555455667788999999999888743 4899998775
Q ss_pred ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
... .+.. ........|+|||++|+++..
T Consensus 357 ~~~----~l~~-~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 357 GER----VLTD-TGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred CeE----EccC-CCCCCCceECCCCCEEEEEEe
Confidence 431 1222 223456789999998887765
No 215
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.96 E-value=5.6e-10 Score=129.05 Aligned_cols=150 Identities=20% Similarity=0.323 Sum_probs=122.3
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s 181 (768)
.|.+|...|+|+.|...|.++++|++|..||||..+++.++....||.+.|+.++.+. +...+++++.|..|++|-+..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence 3679999999999999999999999999999999999999999999999999999998 888999999999999999999
Q ss_pred CcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeE-eecCCCCeEEEEEccCCCeEEEEEe
Q 004203 182 AECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI-VLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 182 g~~i~~l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~-l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+.++..+ +|.+.|++++|+|-. .++.+|.+++||.+-.-....|.. ......-+-++.|..++..+++...
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 9998874 799999999999976 233356699999983222111111 1223456677777777776666544
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.93 E-value=2.1e-09 Score=119.83 Aligned_cols=94 Identities=27% Similarity=0.373 Sum_probs=86.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (768)
Q Consensus 107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~ 186 (768)
.+.|+.++|+|||++||+.+.||.+||||..+.+.+..++..-+...|++||| |+++|++|+.|.-|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 44789999999999999999999999999999888888777778899999999 99999999999999999999988877
Q ss_pred E-ecCCCCeEEEEEcC
Q 004203 187 S-RDFYRPIASIAFHA 201 (768)
Q Consensus 187 ~-l~h~~~V~svafSP 201 (768)
. .+|+..|..++|+|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 6 67999999999997
No 217
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.2e-07 Score=108.20 Aligned_cols=170 Identities=16% Similarity=0.098 Sum_probs=109.6
Q ss_pred cCCCEEEEEeC-C--CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCC--eEEEEeCCCCeEEEEEecCC
Q 004203 79 DARRGLASWVE-A--ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCLKVLHGHR 149 (768)
Q Consensus 79 d~g~~LvSgs~-D--gsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSg-S~Dg--tVrVWDl~tg~~l~~l~gH~ 149 (768)
.+++.|+..+. + ..|.+||+.+++ +....+.....+|+|||+.|+.. +.++ .|++||+++++.. .+..+.
T Consensus 227 PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~ 305 (448)
T PRK04792 227 PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR 305 (448)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC
Confidence 34455543332 2 257888887653 33333445678999999988754 4555 4888899888754 444455
Q ss_pred CCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIWRYNMR 222 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd--d~--I~IWDl~t~ 222 (768)
.......|+| |++.|+..+. ++ .|+++|+.+++..............+|+|||++|++.+. +. |.++|+.++
T Consensus 306 ~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 306 AIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 5567789999 7777766553 33 688889988876554322333445789999999988763 22 677787776
Q ss_pred ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+... +... .......|+|||+.|+.+..
T Consensus 385 ~~~~----lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 385 AMQV----LTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred CeEE----ccCC-CCCCCceECCCCCEEEEEEe
Confidence 5321 2222 12234589999998887764
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.87 E-value=9.6e-09 Score=106.61 Aligned_cols=139 Identities=18% Similarity=0.231 Sum_probs=113.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--CeEE-
Q 004203 80 ARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--GSCL- 142 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~--------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t--g~~l- 142 (768)
....++.|-++|.+.+||..++ ....|+.+|.++.|.+.-..=++|+.+..+..|+++. +.+.
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 4456778999999999999875 2457999999999998666667888888999998754 3221
Q ss_pred -EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEc
Q 004203 143 -KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRY 219 (768)
Q Consensus 143 -~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd~-I~IWDl 219 (768)
..+.-..-.|..+..-| |++++|+++.|+.||+|..++..++..++ |...|++++|+||...+|.++.|. |.+|++
T Consensus 244 ~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 11111223477789999 99999999999999999999999998876 889999999999999999999655 999986
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=2.4e-08 Score=111.61 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=115.3
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCC---------
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT--------- 138 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~-----L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~t--------- 138 (768)
.....+|..|++|+.|..+.+||....+ -.+|...|.++.|-| +.+++++|..|..|++||+..
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~ 135 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG 135 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC
Confidence 3344688999999999999999987554 259999999999999 677899999999999999974
Q ss_pred -CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-------EEEe----cCCCCeEEEEEcCCCC-E
Q 004203 139 -GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-------IGSR----DFYRPIASIAFHASGE-L 205 (768)
Q Consensus 139 -g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-------i~~l----~h~~~V~svafSPDG~-~ 205 (768)
.+....+..|...|..++..|...+.+.+++.||+|+-+|++.... ...+ ..--...++..+|... +
T Consensus 136 ~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~ 215 (758)
T KOG1310|consen 136 MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYY 215 (758)
T ss_pred ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCce
Confidence 1334566789999999999995558999999999999999986321 1111 1122457889999765 7
Q ss_pred EEEEECCe-EEEEEcC
Q 004203 206 LAVASGHK-LYIWRYN 220 (768)
Q Consensus 206 LatgSdd~-I~IWDl~ 220 (768)
|++|+.+- .++||.+
T Consensus 216 laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 216 LAVGGSDPFARLYDRR 231 (758)
T ss_pred EEecCCCchhhhhhhh
Confidence 78887776 9999954
No 220
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.82 E-value=2.7e-08 Score=118.13 Aligned_cols=141 Identities=21% Similarity=0.248 Sum_probs=119.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE-EEecCCCCcEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPWV 154 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~g~V~s 154 (768)
..-++++++--+.|.+|+.... .+.+|.+.|..+.|+-||+++++.|+|.++++|++++.+... ...+|...|+.
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 4567888888999999998744 378999999999999999999999999999999999988765 66789999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004203 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASIAFHASGELLAVASGHK-LYIWRYNMRE 223 (768)
Q Consensus 155 VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~-~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~ 223 (768)
+.|+| + .+++++.|.+.++|+....+......|. +.+..++..++...++++++|+ +++||+....
T Consensus 224 ~~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 224 CCFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEecc-c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 99999 4 9999999999999977654444333443 5788999999999999998655 9999987643
No 221
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=1.7e-07 Score=96.56 Aligned_cols=179 Identities=12% Similarity=0.000 Sum_probs=120.8
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE---
Q 004203 79 DARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--- 141 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~--------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~--- 141 (768)
..++.++.+..+|.|-+..+..- .+++|.++|+.++|. ..+|++|+. |.|+=|..+....
T Consensus 20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLA 96 (325)
T ss_pred CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhcc
Confidence 34566777778888877776521 246899999999999 456666654 9999997654321
Q ss_pred ---EEEE--ecCC-----CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEE
Q 004203 142 ---LKVL--HGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS 210 (768)
Q Consensus 142 ---l~~l--~gH~-----g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPDG~~LatgS 210 (768)
+... .-|. -.|+.+-..| ..+-+++++.|+.++-||+++|+.++++ +|.+.+.++.--.....+.+|+
T Consensus 97 ~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~ 175 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA 175 (325)
T ss_pred chhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC
Confidence 1111 1222 3588888899 5555556668999999999999999986 5999999999855555677777
Q ss_pred -CCeEEEEEcCCCccccCCeEe------e-cCCCCeEEEEEccCCCeEEEEEe----eCCcCCCC
Q 004203 211 -GHKLYIWRYNMREETSSPRIV------L-RTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSE 263 (768)
Q Consensus 211 -dd~I~IWDl~t~~~~~~~~~l------~-~h~~~V~sVaFSPDG~~LlaS~s----vwdl~sg~ 263 (768)
||++++||.++++........ . ....+|-+++- +..+++.++. .|.++..+
T Consensus 176 EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse 238 (325)
T KOG0649|consen 176 EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSE 238 (325)
T ss_pred CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCC
Confidence 556999999998865411110 0 01234555554 4456666654 67776543
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.79 E-value=5.4e-07 Score=100.62 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=116.5
Q ss_pred EEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEcc
Q 004203 84 LASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159 (768)
Q Consensus 84 LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP 159 (768)
++.-..++.|.+.|..+.+ +......-..+.|+|||+++++++.|+.|.++|+.+++.+..++.. .....+++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence 3456678899999988763 3333333345789999999999999999999999999999998754 4477899999
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCcEEEEecC--------CCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCC
Q 004203 160 LNPTIIASGS-LDHEVRLWNASTAECIGSRDF--------YRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSP 228 (768)
Q Consensus 160 ~dg~lLaSgS-~DgtVrLWDl~sg~~i~~l~h--------~~~V~svafSPDG~~LatgSd--d~I~IWDl~t~~~~~~~ 228 (768)
||++++.+. .++.+.++|.++.+.++.+.. ...+..+..+|....+++.-. +.|.+.|+...+...
T Consensus 88 -DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~-- 164 (369)
T PF02239_consen 88 -DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK-- 164 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--
T ss_pred -CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--
Confidence 888877665 688999999999998887642 346778888998886666664 448888887764321
Q ss_pred eEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 229 RIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 229 ~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
..............|+|++++++.+..
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred eeeecccccccccccCcccceeeeccc
Confidence 234445678889999999999877653
No 223
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=9.3e-08 Score=113.42 Aligned_cols=173 Identities=15% Similarity=0.166 Sum_probs=127.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCCCC
Q 004203 81 RRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRT 151 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~~L-----~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~g~ 151 (768)
.+.|++.++-..|++||++..+. .+-...|+++.-+. .|+.|+.|-.||.|++||.+... .+...+.|...
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 44555555678899999986632 24555677776665 56999999999999999987643 46777889887
Q ss_pred --cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cC---CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004203 152 --PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DF---YRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (768)
Q Consensus 152 --V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l---~h---~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~ 223 (768)
|..+.+.+.+-..|++|+.||.|++||++.......+ .| .+..+++..|++...+|+|+...|+||++....
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ 1336 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhh
Confidence 8899998844456999999999999999985222211 12 235899999999999999999779999997654
Q ss_pred ccc---CCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 224 ETS---SPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 224 ~~~---~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
... .+..+......+.+++|||.--.++++
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred hcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence 322 111222234678999999987755554
No 224
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.9e-07 Score=105.52 Aligned_cols=144 Identities=18% Similarity=0.265 Sum_probs=99.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 004203 106 PPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA 182 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg 182 (768)
|...|..+.|+-+|.||++... ...|.|+++...+...-|+...+.|.++.|+| ...+|+.++. ..|+|||+...
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kq 597 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQ 597 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHH
Confidence 3444555555555555555433 23455555554444444545567799999999 6666666554 46999999987
Q ss_pred cEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 183 ECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 183 ~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
+.++.+. ....|..++.+|.|..|+.++.+ ++..+|++..... ...+.-|...+++|+||+.-..++++
T Consensus 598 elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP--yk~lr~H~~avr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 598 ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP--YKTLRLHEKAVRSVAFHKRYPLFASG 668 (733)
T ss_pred HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch--hHHhhhhhhhhhhhhhccccceeeee
Confidence 7766643 55688999999999999999955 5999999877542 23455688999999999877744443
No 225
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.76 E-value=4.1e-07 Score=103.05 Aligned_cols=171 Identities=15% Similarity=0.061 Sum_probs=139.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEEC--------------------CCCCEEEEEeCCCeEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAFS--------------------PDGKTLASTHGDHTVK 132 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~L~-------gH~~~VtslafS--------------------PDG~~LaSgS~DgtVr 132 (768)
...+++....||.+++|+....++. .-++..++..|. -|-..++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 3456677788999999999876432 224455555552 2334667788899999
Q ss_pred EEeCCCCeEEEEEe--cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 004203 133 IIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVA 209 (768)
Q Consensus 133 VWDl~tg~~l~~l~--gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~Latg 209 (768)
+|++..|+....+. +|.+.|.++.++. +-..|.|++.|+.+..|+...+..++.+. ....+.+++.+|||+.|+++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 99999999887775 6889999999988 88899999999999999999999888875 56688999999999998876
Q ss_pred ECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccC-----CCeEEEEEe
Q 004203 210 SGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH-----AAPLLLTAE 255 (768)
Q Consensus 210 Sdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPD-----G~~LlaS~s 255 (768)
+ +.|++||+.+++... .+.+|...|+++.|--+ |.+++++..
T Consensus 163 s-~~ik~~~~~~kevv~---~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 163 S-RQIKVLDIETKEVVI---TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred c-ceEEEEEccCceEEE---EecCCCcceEEEEEEEeccccccceeeeccc
Confidence 5 679999999998755 88999999999999988 888887664
No 226
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.74 E-value=8.9e-07 Score=102.92 Aligned_cols=176 Identities=11% Similarity=0.061 Sum_probs=127.3
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCCE--EEEEeCCCeEEEEeCCCCeE----
Q 004203 78 RDARRGLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGKT--LASTHGDHTVKIIDCQTGSC---- 141 (768)
Q Consensus 78 ~d~g~~LvSgs~DgsIrlWd~~t~~----------L~gH~~~VtslafSPDG~~--LaSgS~DgtVrVWDl~tg~~---- 141 (768)
..+...++.|..+|.|.+||..... ...|..+|+.+.|-.+..- |++++.||.|..|+++.-..
T Consensus 252 p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~ 331 (555)
T KOG1587|consen 252 PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG 331 (555)
T ss_pred cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence 3467889999999999999998652 2379999999999885544 99999999999998764322
Q ss_pred --EEEEe------cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC---CCc-----EE-EEecCCCCeEEEEEcCCCC
Q 004203 142 --LKVLH------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS---TAE-----CI-GSRDFYRPIASIAFHASGE 204 (768)
Q Consensus 142 --l~~l~------gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~---sg~-----~i-~~l~h~~~V~svafSPDG~ 204 (768)
..... .....++++.|.+.+...++.|+.+|.|+--+-. ... .+ ....|.+.|+++.++|=+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~ 411 (555)
T KOG1587|consen 332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP 411 (555)
T ss_pred cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc
Confidence 11111 1123578899999888999999999988773333 222 01 1124788999999999776
Q ss_pred -EEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 205 -LLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 205 -~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.+.+++|.+++||.-..... .......+...|.+++|||....++++..
T Consensus 412 k~fls~gDW~vriWs~~~~~~--Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 412 KNFLSVGDWTVRIWSEDVIAS--PLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ceeeeeccceeEeccccCCCC--cchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 45555577899998763222 22344556677999999999887777665
No 227
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=1e-07 Score=107.31 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=124.7
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEeCC--------------CCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 004203 70 FSQIFEAGRDARRGLASWVEAESLHHLRPK--------------YCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID 135 (768)
Q Consensus 70 ~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~--------------t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWD 135 (768)
...+.+.....+..+++++-|++|+.|++. .+.+.||++.|+.+++|+....|++++.||+|++|+
T Consensus 345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence 334555666789999999999999999543 225789999999999999999999999999999998
Q ss_pred CCCCeE--------------------------------------------EEEEe-----c--CCCCcEEEEEccCCCCE
Q 004203 136 CQTGSC--------------------------------------------LKVLH-----G--HRRTPWVVRFHPLNPTI 164 (768)
Q Consensus 136 l~tg~~--------------------------------------------l~~l~-----g--H~g~V~sVafSP~dg~l 164 (768)
...... +..+. + ....+..+.++| +..+
T Consensus 425 ~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~ 503 (577)
T KOG0642|consen 425 PTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADI 503 (577)
T ss_pred cCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCe
Confidence 744322 00000 0 013356688899 8899
Q ss_pred EEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcccc
Q 004203 165 IASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETS 226 (768)
Q Consensus 165 LaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~ 226 (768)
.+++-.|+.|+++|..+++.+.. ..|...++++++.|+|-+|++++. +.+++|.+.......
T Consensus 504 ~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 504 TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred eEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 99999999999999999998776 568899999999999999999995 559999987766533
No 228
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.71 E-value=4.2e-07 Score=109.54 Aligned_cols=195 Identities=12% Similarity=0.153 Sum_probs=137.0
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS----- 140 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~----- 140 (768)
.++.+..+++++.||+|++|+...- ++..-...+.++.+.+.++.+|.++.||.|++.+++-.+
T Consensus 1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccce
Confidence 4455689999999999999998632 122245678899999999999999999999999987621
Q ss_pred --EEEEE--ecCCCCcEEEEEccCCCC-EEEEEeCCCeEEEEECCCCcEEEEec---CCCCeEEEEEcCCCCEEEEEECC
Q 004203 141 --CLKVL--HGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGH 212 (768)
Q Consensus 141 --~l~~l--~gH~g~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~sg~~i~~l~---h~~~V~svafSPDG~~LatgSdd 212 (768)
+.+.. ++.+..|..-+|....+. .++.+..-+.|..||+++.....+++ ..+.|++++.+|.+.+++.|+..
T Consensus 1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC
Confidence 11111 222222333344433444 78888888999999999877666654 46789999999999999999965
Q ss_pred -eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCC---eEEEEEe-------eCCcCCCCcceeEeecCC
Q 004203 213 -KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA---PLLLTAE-------VNDLDSSESSLTLATSPG 273 (768)
Q Consensus 213 -~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~---~LlaS~s-------vwdl~sg~~~~~L~t~~G 273 (768)
.+-+||++-+..+.. ....+..+++.+..+|--+ ..++++. .|++..+.....+...++
T Consensus 1217 G~l~lWDLRF~~~i~s--w~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~ 1286 (1431)
T KOG1240|consen 1217 GQLVLWDLRFRVPILS--WEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDG 1286 (1431)
T ss_pred ceEEEEEeecCceeec--ccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCC
Confidence 499999998876441 1223457788777777543 4444443 778877766666655533
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.71 E-value=9.5e-07 Score=94.08 Aligned_cols=142 Identities=18% Similarity=0.199 Sum_probs=107.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeE--EEEEecCCC
Q 004203 81 RRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSC--LKVLHGHRR 150 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~~-------L~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~--l~~l~gH~g 150 (768)
+.+|+.. .++.|.+|...... .......+.+++-..+..+||.= -.-|.|.|-|+...+. ...+..|..
T Consensus 104 r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s 182 (346)
T KOG2111|consen 104 RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS 182 (346)
T ss_pred CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC
Confidence 3444433 35688888876431 11223334444444455555543 3468999999977655 478899999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEec---CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004203 151 TPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE 224 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~sg~~i~~l~---h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~ 224 (768)
.|.|++.+- +|.++|++|..|+ |||||..+|+.+..+. ....|.+++|+||+.+|+++||.+ ++|+.++....
T Consensus 183 ~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 183 DIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred ceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 999999999 9999999999996 8999999999988864 456899999999999999999754 99999977553
No 230
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=2.3e-06 Score=100.61 Aligned_cols=215 Identities=13% Similarity=0.153 Sum_probs=143.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC---CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG---~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
+.+.++ +..+..|+++...++ .+.+|..+++.+.+.|.. .++++++.||+|++||...++.++++..+.. +
T Consensus 27 D~k~l~-~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v 104 (792)
T KOG1963|consen 27 DAKFLF-LCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-V 104 (792)
T ss_pred CCcEEE-EeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-e
Confidence 344443 445678999999887 588999999999999944 4677999999999999998887777653321 2
Q ss_pred EE-----------------------------------------------------------EEEccCCCCEEEEEeCCCe
Q 004203 153 WV-----------------------------------------------------------VRFHPLNPTIIASGSLDHE 173 (768)
Q Consensus 153 ~s-----------------------------------------------------------VafSP~dg~lLaSgS~Dgt 173 (768)
.. +.+++ .+. +.....+..
T Consensus 105 ~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~ge-~~~i~~~~~ 182 (792)
T KOG1963|consen 105 HALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-SGE-FKGIVHMCK 182 (792)
T ss_pred eEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-Cce-EEEEEEeee
Confidence 11 22222 122 222223445
Q ss_pred EEEEECCCCcEEEE-----ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC-CccccCCeEeecCCCCeEEEEEccC
Q 004203 174 VRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM-REETSSPRIVLRTRRSLRAVHFHPH 246 (768)
Q Consensus 174 VrLWDl~sg~~i~~-----l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t-~~~~~~~~~l~~h~~~V~sVaFSPD 246 (768)
+++|+..++..... ..|...+++.++||++++++++. +|+|.+|.--. .........+..|...|.++.|++|
T Consensus 183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~ 262 (792)
T KOG1963|consen 183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD 262 (792)
T ss_pred EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence 77777776441111 23556689999999999999998 56699996433 2333345677789999999999999
Q ss_pred CCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCC
Q 004203 247 AAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH 325 (768)
Q Consensus 247 G~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~ 325 (768)
|.+|++++... ++.+|...++. ....|....+++...+|||+....+...|.
T Consensus 263 G~~LlSGG~E~-----------------------VLv~Wq~~T~~----kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 263 GAYLLSGGREG-----------------------VLVLWQLETGK----KQFLPRLGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred CceEeecccce-----------------------EEEEEeecCCC----cccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence 99999887521 23333333322 122334456788888999998877765543
No 231
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=1.1e-05 Score=87.63 Aligned_cols=165 Identities=13% Similarity=0.172 Sum_probs=119.3
Q ss_pred CCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCC--CeEEE--EEecCCCCcEEE
Q 004203 90 AESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQT--GSCLK--VLHGHRRTPWVV 155 (768)
Q Consensus 90 DgsIrlWd~~t~-------~L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~t--g~~l~--~l~gH~g~V~sV 155 (768)
++-|.+|++.+. ++..+.+..+=++|+|++++|+++-.+ |.|-.|.++. |+... .....+.....+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567899988743 355788899999999999999998664 6677776654 55321 112223344678
Q ss_pred EEccCCCCEEEEEeCC-CeEEEEECCC-CcE---EEEecCCCC----------eEEEEEcCCCCEEEEEE--CCeEEEEE
Q 004203 156 RFHPLNPTIIASGSLD-HEVRLWNAST-AEC---IGSRDFYRP----------IASIAFHASGELLAVAS--GHKLYIWR 218 (768)
Q Consensus 156 afSP~dg~lLaSgS~D-gtVrLWDl~s-g~~---i~~l~h~~~----------V~svafSPDG~~LatgS--dd~I~IWD 218 (768)
++++ ++++++++... +.|.++-++. |.. +....|.+. +....|+|++++|++.. .|+|.+|+
T Consensus 95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 9999 99998888764 6899999965 443 333455554 88899999999999988 56799999
Q ss_pred cCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 219 l~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+..+................+.|.|+|++++..+..+
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E 210 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE 210 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEec
Confidence 9976543322222345677899999999997666554
No 232
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=7e-07 Score=106.22 Aligned_cols=176 Identities=15% Similarity=0.168 Sum_probs=125.6
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE
Q 004203 78 RDARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC 141 (768)
Q Consensus 78 ~d~g~~LvSgs~DgsIrlWd~~t~----------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~ 141 (768)
..+...+++++.||.|++|+-... .+.+-.+.=.-++|.....+|+++++-..|+|||.+...+
T Consensus 1120 e~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1120 EQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV 1199 (1387)
T ss_pred ccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee
Confidence 345677889999999999985421 1222233335577888667777777789999999988777
Q ss_pred EEEEe-cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---EEE-ecCCCC--eEEEEEcCCCC-EEEEEE-CC
Q 004203 142 LKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGS-RDFYRP--IASIAFHASGE-LLAVAS-GH 212 (768)
Q Consensus 142 l~~l~-gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---i~~-l~h~~~--V~svafSPDG~-~LatgS-dd 212 (768)
+..+. +....|+++.-+-..+++++.|..||.|++||.+.... +.. ..|... |..+.+.+.|- .|++++ +|
T Consensus 1200 ~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1200 VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence 76664 33445777766655789999999999999999987543 333 346655 99999998775 488887 56
Q ss_pred eEEEEEcCCCccccCCeEeecCC--C-CeEEEEEccCCCeEEEEE
Q 004203 213 KLYIWRYNMREETSSPRIVLRTR--R-SLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 213 ~I~IWDl~t~~~~~~~~~l~~h~--~-~V~sVaFSPDG~~LlaS~ 254 (768)
.|++||++...... ...+..|. + .++++..|++...+++++
T Consensus 1280 ~I~~~DlR~~~~e~-~~~iv~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKET-FLTIVAHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred eEEEEecccCcccc-cceeeeccccCccceeeeeccCCCeeeecC
Confidence 69999999853222 33333332 3 599999999999665554
No 233
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.64 E-value=8.5e-07 Score=103.09 Aligned_cols=171 Identities=16% Similarity=0.169 Sum_probs=122.8
Q ss_pred CEEEEEeCCCeEEEEeCCCCC-------C--C-------CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe----
Q 004203 82 RGLASWVEAESLHHLRPKYCP-------L--S-------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---- 140 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~~-------L--~-------gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~---- 140 (768)
..+++++.||+|..|+.+--. + . .-...+++++|.+ +-..|+.|+.+|.|..-+....+
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 569999999999999876321 1 1 1234689999999 77889999999999885443322
Q ss_pred ----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CCcEEEEec-CCCCeEEEEEcCCCCEEEEE-E-CC
Q 004203 141 ----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGSRD-FYRPIASIAFHASGELLAVA-S-GH 212 (768)
Q Consensus 141 ----~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-sg~~i~~l~-h~~~V~svafSPDG~~Latg-S-dd 212 (768)
....+..|.+.|+.+.++|...+++++++ |.+|+||... ...++..+. +...|++++|+|....+.+. . +|
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 12345567899999999997777777777 9999999987 555555444 55669999999987654444 4 45
Q ss_pred eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 213 ~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
.|.+||+....... .....-+....+.+.|+++|+.++++.
T Consensus 465 ~l~iWDLl~~~~~P-v~s~~~~~~~l~~~~~s~~g~~lavGd 505 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEP-VLSQKVCSPALTRVRWSPNGKLLAVGD 505 (555)
T ss_pred ceehhhhhccccCC-cccccccccccceeecCCCCcEEEEec
Confidence 59999998765532 112222356678888999999666554
No 234
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=5.2e-06 Score=94.25 Aligned_cols=186 Identities=14% Similarity=0.066 Sum_probs=117.6
Q ss_pred CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCC-EEEEEeCC---CeEEEEECCCCcEEEEecCCCCeEEEEEcCCC
Q 004203 128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASG 203 (768)
Q Consensus 128 DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~-lLaSgS~D---gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG 203 (768)
...|.+-|.+... .+.+.... ......|+| |++ +++..+.+ ..|+++|+.+++........+......|+|||
T Consensus 168 ~~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 168 KSNIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred cceEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCC
Confidence 3467777766544 33333333 677889999 776 46654443 47999999999877766666667778999999
Q ss_pred CEEEEEEC--C--eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCC
Q 004203 204 ELLAVASG--H--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPP 279 (768)
Q Consensus 204 ~~LatgSd--d--~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~ 279 (768)
+.|+...+ + .|+++|+.++... .+..+........|+|||+.|++++... +.
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SPDG~~I~F~Sdr~---------------g~----- 300 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVEDDKRIVFVSDRL---------------GY----- 300 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECCCCCEEEEEECCC---------------CC-----
Confidence 98876652 2 2999998776532 2333333344568999999998887421 11
Q ss_pred CeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCC----C-cceEEeccCCCceeeeec
Q 004203 280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDS----G-ATRTQQSLRSSSSVRLLT 346 (768)
Q Consensus 280 ~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~----G-s~~~~~~~~ss~~~rl~~ 346 (768)
+.++..+...+....+... + ...+.|||||++|++.....+- + ..++..+.++...++|+.
T Consensus 301 ~~Iy~~dl~~g~~~rlt~~--g----~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 301 PNIFMKKLNSGSVEQVVFH--G----KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred ceEEEEECCCCCeEeCccC--C----CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence 2345555444333222221 1 1235899999999998654321 2 456666776666555554
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.61 E-value=1.5e-06 Score=92.68 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=112.0
Q ss_pred CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEec---CCCCcEEEEEccCCC
Q 004203 90 AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHG---HRRTPWVVRFHPLNP 162 (768)
Q Consensus 90 DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~-tg~~l~~l~g---H~g~V~sVafSP~dg 162 (768)
-.+|.+||-.... -..-...|.++.+++| .|++. ....|+||... +-+.+..+.. ..+ ..+++-+. +.
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkG-lC~~~~~~-~k 148 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKG-LCSLCPTS-NK 148 (346)
T ss_pred CceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCc-eEeecCCC-Cc
Confidence 4568889843321 1234667888988864 44443 45689999987 4455555432 333 33333333 34
Q ss_pred CEEEE-EeCCCeEEEEECCCCcE---EEEecCCCCeEEEEEcCCCCEEEEEEC-Ce-EEEEEcCCCccccCCeEeecCCC
Q 004203 163 TIIAS-GSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHASGELLAVASG-HK-LYIWRYNMREETSSPRIVLRTRR 236 (768)
Q Consensus 163 ~lLaS-gS~DgtVrLWDl~sg~~---i~~l~h~~~V~svafSPDG~~LatgSd-d~-I~IWDl~t~~~~~~~~~l~~h~~ 236 (768)
.+||. |-.-|.|.|-|+...+. ....+|...|.+++.+-+|..+|++|. |+ |+|||..+++...+ ...-....
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E-~RRG~d~A 227 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE-LRRGVDRA 227 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee-eecCCchh
Confidence 45555 55678999999987655 566789999999999999999999995 55 99999999987552 11122357
Q ss_pred CeEEEEEccCCCeEEEEEe
Q 004203 237 SLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 237 ~V~sVaFSPDG~~LlaS~s 255 (768)
.|.+++|||+..+|++++.
T Consensus 228 ~iy~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSD 246 (346)
T ss_pred eEEEEEeCCCccEEEEEcC
Confidence 8999999999998888775
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.60 E-value=7.4e-07 Score=95.11 Aligned_cols=137 Identities=17% Similarity=0.274 Sum_probs=104.9
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCE-EEEEeCCCeEEEEECCCCcEEEEec-
Q 004203 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI-IASGSLDHEVRLWNASTAECIGSRD- 189 (768)
Q Consensus 112 slafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~l-LaSgS~DgtVrLWDl~sg~~i~~l~- 189 (768)
-+.|||+|+++|+++.- .+.|-|.++-+....|.. -..|.-+.|.- |..+ +.....|+.|.+|++...+-...++
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~a-ds~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKA-DSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeec-cceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 47899999999998765 788888887765554443 34577789998 5554 4556778899999999887766665
Q ss_pred CCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 190 FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 190 h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
....+.+++|+|||+.|...+ +-+|.+|.+.+..... +...+..+..++|+|||++.+....
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCCceeeeeec
Confidence 567899999999998887777 3459999999887532 3333567799999999997766554
No 237
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.60 E-value=2.5e-06 Score=103.05 Aligned_cols=164 Identities=18% Similarity=0.143 Sum_probs=115.7
Q ss_pred EeCCCC---CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCC-------eEEEEEecCCCCcEEEEEccCCCCE
Q 004203 96 LRPKYC---PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTI 164 (768)
Q Consensus 96 Wd~~t~---~L~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~g~V~sVafSP~dg~l 164 (768)
|+.+.. .+..|+..|..++.+++ +.+|++||.||+||+||++.- +...++.-.+..+.++.+.+ .++.
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCe
Confidence 555433 57789999999999884 499999999999999998541 23344443567788999999 9999
Q ss_pred EEEEeCCCeEEEEECCCCc-------EEEEe--cCCCCeEE-EEEcCC-CC-EEEEEEC-CeEEEEEcCCCccccCCeEe
Q 004203 165 IASGSLDHEVRLWNASTAE-------CIGSR--DFYRPIAS-IAFHAS-GE-LLAVASG-HKLYIWRYNMREETSSPRIV 231 (768)
Q Consensus 165 LaSgS~DgtVrLWDl~sg~-------~i~~l--~h~~~V~s-vafSPD-G~-~LatgSd-d~I~IWDl~t~~~~~~~~~l 231 (768)
+|.++.||.|++.++.-.+ +.+.. ...+.+.+ -+|... +. .|+.+.+ ++|..||+++....... ..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l-k~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL-KN 1191 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh-hc
Confidence 9999999999999987621 11211 22333333 344432 33 5666665 55999999988765411 12
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe-----eCCcCC
Q 004203 232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS 261 (768)
Q Consensus 232 ~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~s 261 (768)
.-..+.|++++.+|.+.+++++.. .||++-
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 223478999999999998888765 777763
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.60 E-value=5.8e-08 Score=107.08 Aligned_cols=188 Identities=15% Similarity=0.105 Sum_probs=155.9
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203 69 SFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (768)
Q Consensus 69 s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~L~g---H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l 145 (768)
.|++...--..+|..|+-++..|.|-.+|..++.|.. -...|.++.|-.+.++||++-. ..++||| ..|..+..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~GtElHCl 206 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQK-KYVYVYD-NNGTELHCL 206 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhh-ceEEEec-CCCcEEeeh
Confidence 5566666667789999999999999999998886532 3467999999998888887754 5899999 557888888
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCc
Q 004203 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMRE 223 (768)
Q Consensus 146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~ 223 (768)
+.|.. |..+.|-| ..-+|++++..|.++.-|+.+|+.+..+. -.+.+..++-+|-+..+-+|.. |.|.+|.-...+
T Consensus 207 k~~~~-v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRHIR-VARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhcCc-hhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 87755 88899999 88889999999999999999999988765 4567888888998888888874 559999988777
Q ss_pred cccCCeEeecCCCCeEEEEEccCCCeEEEEEe-----eCCcCCCC
Q 004203 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE 263 (768)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s-----vwdl~sg~ 263 (768)
.. ..+..|.++|++|++.++|+|+++++. +||++...
T Consensus 285 PL---vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 285 PL---VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred hH---HHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 53 478889999999999999999999886 88888544
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=6.5e-07 Score=101.01 Aligned_cols=167 Identities=14% Similarity=0.172 Sum_probs=129.0
Q ss_pred EEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec------CCC--
Q 004203 83 GLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG------HRR-- 150 (768)
Q Consensus 83 ~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g------H~g-- 150 (768)
.|..++....|.-++++.+. |....+.+++|..++-..+|++|+.||.|..||.++...+..+.. |.+
T Consensus 147 Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc
Confidence 35566666678888888763 455678899999999999999999999999999988776655532 222
Q ss_pred ---CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCeEEEEEcCCC--CEEEEEECCeEEEEEcCCCc
Q 004203 151 ---TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY--RPIASIAFHASG--ELLAVASGHKLYIWRYNMRE 223 (768)
Q Consensus 151 ---~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~--~~V~svafSPDG--~~LatgSdd~I~IWDl~t~~ 223 (768)
.|+++.|+- +|-.++.|..+|.|.|||+++.+++..-.|. -+|..+.|.+.+ ..|++....-++|||-.+++
T Consensus 227 ~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 227 AAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK 305 (703)
T ss_pred ccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCC
Confidence 489999998 7999999999999999999999988876654 488999997763 34554434449999998886
Q ss_pred cccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
.. ........++.+++-|++-.++++-
T Consensus 306 ~~----asiEpt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 306 PM----ASIEPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred ce----eeccccCCcCceeeecCCceEEEec
Confidence 43 3444556699999999988555543
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.58 E-value=5.3e-06 Score=92.71 Aligned_cols=131 Identities=14% Similarity=0.176 Sum_probs=95.6
Q ss_pred CEE-EEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEE
Q 004203 120 KTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIA 198 (768)
Q Consensus 120 ~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~sva 198 (768)
+++ ++-..++.|.+.|..+.+.+..+.........+.|+| |+++++..++|+.|.++|+.+++.+.++........++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 445 4556789999999999999999986554444578999 99999999999999999999999999998888889999
Q ss_pred EcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEeec-------CCCCeEEEEEccCCCeEEEEE
Q 004203 199 FHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLR-------TRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 199 fSPDG~~LatgS--dd~I~IWDl~t~~~~~~~~~l~~-------h~~~V~sVaFSPDG~~LlaS~ 254 (768)
+++||++++++. .+.+.++|..+.+... .+.. ....+.+|..+|....++++.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~---~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVK---TIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEE---EEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred EcCCCCEEEEEecCCCceeEecccccccee---ecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 999999999887 5679999998877544 2211 234678888899988666553
No 241
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.57 E-value=1.4e-07 Score=104.18 Aligned_cols=168 Identities=17% Similarity=0.230 Sum_probs=133.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
....|++.++.|.++--|+.+++ +..-.+.+..+.-+|-...+-.|...|+|.+|.....+++..+..|.++|.+|
T Consensus 220 yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 220 YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI 299 (545)
T ss_pred hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence 45567888899999999998885 44567788999999988899999999999999999999998889999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC-c-cccCCeEeec
Q 004203 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR-E-ETSSPRIVLR 233 (768)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~-~-~~~~~~~l~~ 233 (768)
++.+ +|.++++.+.|..|+|||++.-....++....+...++||..| .||.+.++.+.||.=... . ....+.....
T Consensus 300 Av~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~ 377 (545)
T KOG1272|consen 300 AVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHR 377 (545)
T ss_pred EECC-CCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhc
Confidence 9999 9999999999999999999987766666556677788888655 566666778999953222 1 1111222222
Q ss_pred CCCCeEEEEEccCCCe
Q 004203 234 TRRSLRAVHFHPHAAP 249 (768)
Q Consensus 234 h~~~V~sVaFSPDG~~ 249 (768)
....|..+.|.|-...
T Consensus 378 ~~~~V~~l~FcP~EDv 393 (545)
T KOG1272|consen 378 CGGPVEDLRFCPYEDV 393 (545)
T ss_pred cCcccccceeccHHHe
Confidence 3468999999997763
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=3e-06 Score=92.33 Aligned_cols=178 Identities=17% Similarity=0.136 Sum_probs=132.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-----CCC--CCCCCeEEEEECCC-CCEEEEEeCC--CeEEEEeCCCCeEEEEEecCC
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-----PLS--PPPRSTIAAAFSPD-GKTLASTHGD--HTVKIIDCQTGSCLKVLHGHR 149 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-----~L~--gH~~~VtslafSPD-G~~LaSgS~D--gtVrVWDl~tg~~l~~l~gH~ 149 (768)
....|+++..+|.+++|..+.+ ++. .-...+..+.-++. ...+++|+.. ..++|||++..+.+..-+.-.
T Consensus 114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred cCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 4677899999999999999844 211 12245677777774 4455668877 889999999885544333211
Q ss_pred ---------CCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCC-cEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEE
Q 004203 150 ---------RTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGH-KLY 215 (768)
Q Consensus 150 ---------g~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~sg-~~i~~l~-h~~~V~svafSPDG~~LatgSdd-~I~ 215 (768)
-.++.+.|-+ + ...|++++.-+.|++||.+.+ +++..+. .+.+++++...|+|++|+++... .+.
T Consensus 194 nD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA 272 (412)
T ss_pred CccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence 1245678877 5 789999999999999999975 4566665 46789999999999999999854 499
Q ss_pred EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (768)
Q Consensus 216 IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~ 260 (768)
.+|++.+.... ..+.+-.+.|++|..+|.+++++.++.+..++
T Consensus 273 ~FD~r~~kl~g--~~~kg~tGsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 273 KFDLRGGKLLG--CGLKGITGSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred eecccCceeec--cccCCccCCcceEEEcCCCceEEeeccceeEE
Confidence 99999987644 23555678999999999999766666543333
No 243
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.56 E-value=8.8e-08 Score=99.59 Aligned_cols=94 Identities=24% Similarity=0.321 Sum_probs=81.6
Q ss_pred EEEeCCCeEEEEeCCCC--C------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203 85 ASWVEAESLHHLRPKYC--P------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156 (768)
Q Consensus 85 vSgs~DgsIrlWd~~t~--~------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa 156 (768)
++++.+..+..|++... . +.-..-.|..+..-||++.+|++++|+.||||+.++.+.+..++-|.+.|++++
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA 300 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA 300 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence 45666777888887643 1 122344688999999999999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEEC
Q 004203 157 FHPLNPTIIASGSLDHEVRLWNA 179 (768)
Q Consensus 157 fSP~dg~lLaSgS~DgtVrLWDl 179 (768)
|+| +..++|.++.|..|.+|++
T Consensus 301 fsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 301 FSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred eCC-CCchhhhccCCceEEeeec
Confidence 999 8899999999999999997
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=3.5e-06 Score=95.32 Aligned_cols=189 Identities=12% Similarity=0.168 Sum_probs=133.7
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCC--CCCCCC-----------------------------------------CeE
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYCP--LSPPPR-----------------------------------------STI 111 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~--L~gH~~-----------------------------------------~Vt 111 (768)
-...|+.-.+++|...-.|++||+..-. |.-|.. .-.
T Consensus 58 k~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GR 137 (703)
T KOG2321|consen 58 KVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGR 137 (703)
T ss_pred EecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCc
Confidence 3344555566778888889999986431 111111 123
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-
Q 004203 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF- 190 (768)
Q Consensus 112 slafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h- 190 (768)
+++++.-..-|+.++....|+.++++.|..+..|....+.++++..++ ...+|++|+.||.|-.||.++...+.++..
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecc
Confidence 344443222344555566899999999999999988889999999999 888999999999999999999877666532
Q ss_pred ------CC-----CeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecC--CCCeEEEEEccC--CCeEEEEE
Q 004203 191 ------YR-----PIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPH--AAPLLLTA 254 (768)
Q Consensus 191 ------~~-----~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPD--G~~LlaS~ 254 (768)
.+ .|+++.|+.||-.+++|+. |.+.|||+++.+. ..+..| .-+|..+.|.+. +..+++.-
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p----l~~kdh~~e~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP----LLVKDHGYELPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc----eeecccCCccceeeecccccCCCceEEecc
Confidence 22 3899999999999999985 5599999999864 334455 467889999776 33343332
Q ss_pred e----eCCcCCCCcceeE
Q 004203 255 E----VNDLDSSESSLTL 268 (768)
Q Consensus 255 s----vwdl~sg~~~~~L 268 (768)
. +|+-..+.....+
T Consensus 293 k~~~kiWd~~~Gk~~asi 310 (703)
T KOG2321|consen 293 KRILKIWDECTGKPMASI 310 (703)
T ss_pred hHHhhhcccccCCceeec
Confidence 2 7776666554443
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.56 E-value=3.4e-05 Score=85.11 Aligned_cols=147 Identities=14% Similarity=0.211 Sum_probs=101.4
Q ss_pred CCeEEEEECCCCCEEEEEeC----CCeEEEEeCCC--CeE--EEEEecCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEE
Q 004203 108 RSTIAAAFSPDGKTLASTHG----DHTVKIIDCQT--GSC--LKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWN 178 (768)
Q Consensus 108 ~~VtslafSPDG~~LaSgS~----DgtVrVWDl~t--g~~--l~~l~gH~g~V~sVafSP~dg~lLaSgS~-DgtVrLWD 178 (768)
.....++++|++++|++... ++.|..|++.. ++. +............++++| ++++|+.+.. +++|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEE
Confidence 44567899999999999977 57899998766 332 333332344566789999 8888888764 88999999
Q ss_pred CCC-CcEEEE---ec-----------CCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcc-cc-CCeEeecCCCCeE
Q 004203 179 AST-AECIGS---RD-----------FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREE-TS-SPRIVLRTRRSLR 239 (768)
Q Consensus 179 l~s-g~~i~~---l~-----------h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~-~~-~~~~l~~h~~~V~ 239 (768)
+.. |..... +. ......++.|+|||++|++.. .|+|++|+++.... .. ............+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 987 444332 21 124577899999999999887 45699999987652 11 1112234467789
Q ss_pred EEEEccCCCeEEEEEe
Q 004203 240 AVHFHPHAAPLLLTAE 255 (768)
Q Consensus 240 sVaFSPDG~~LlaS~s 255 (768)
.+.|+|||+++.+..+
T Consensus 196 h~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNE 211 (345)
T ss_dssp EEEE-TTSSEEEEEET
T ss_pred EEEEcCCcCEEEEecC
Confidence 9999999998877664
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.53 E-value=1.6e-06 Score=103.38 Aligned_cols=175 Identities=14% Similarity=0.126 Sum_probs=136.1
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCC-----eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 004203 79 DARRGLASWVEAESLHHLRPKYCPL---SPPPRS-----TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR 150 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~~L---~gH~~~-----VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g 150 (768)
...+.++.+..++.+-+||.....+ ..+... ..-+-++++.-++++|+--+.|.+|+....+.-..+.||.+
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence 3567788888899999999876521 123322 33455677778999999999999999874433346899999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE--EecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccC
Q 004203 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSS 227 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~--~l~h~~~V~svafSPDG~~LatgSdd-~I~IWDl~t~~~~~~ 227 (768)
.+..+.|+- |+.++++.|.|.++|+|++++.+... .++|...+..++|+|+ .+++++.| +.++|+.+..+..
T Consensus 177 ~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-- 251 (967)
T KOG0974|consen 177 SIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-- 251 (967)
T ss_pred ceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh--
Confidence 999999999 99999999999999999999988765 3789999999999998 88888855 5999976655432
Q ss_pred CeEeecC-CCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203 228 PRIVLRT-RRSLRAVHFHPHAAPLLLTAEVNDLD 260 (768)
Q Consensus 228 ~~~l~~h-~~~V~sVaFSPDG~~LlaS~svwdl~ 260 (768)
.+.+| .+.++.+..+++...+++.+.+-.++
T Consensus 252 --~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 252 --VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred --hhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 35555 56799999998888777766644443
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.46 E-value=2.2e-06 Score=90.54 Aligned_cols=148 Identities=15% Similarity=0.057 Sum_probs=116.9
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC-CCeEEEE-Eec
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ-TGSCLKV-LHG 147 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~-tg~~l~~-l~g 147 (768)
.+..+..+++...+|.+.+-+.... +.++|.-.+.-+.|+. +.+.+++|++|+.+.-||++ .++.+.. .+-
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv 208 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV 208 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee
Confidence 3456667888888888875554432 5678999999999998 66799999999999999998 3444433 566
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CCcEEEEecCCCCeEEEEEcCCCC--EEEEEECCeEEEEEcCCCcc
Q 004203 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGSRDFYRPIASIAFHASGE--LLAVASGHKLYIWRYNMREE 224 (768)
Q Consensus 148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-sg~~i~~l~h~~~V~svafSPDG~--~LatgSdd~I~IWDl~t~~~ 224 (768)
|...|.++.-+|..+.++++|+.|..|++||.+ -++++......+.|..+.++|.-. .|+++-.++.+|.+......
T Consensus 209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccccc
Confidence 888899999998788899999999999999999 578887777789999999999543 45555577788888766544
No 248
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=3.7e-06 Score=98.93 Aligned_cols=180 Identities=13% Similarity=0.041 Sum_probs=136.5
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCC--C------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 004203 72 QIFEAGRDARRGLASWVEAESLHHLRPKY--C------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK 143 (768)
Q Consensus 72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t--~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~ 143 (768)
...++....+..++++..||.|.+|.-.. . .+.-|...|.+++|++||.+|++|+..+.+.+|.+++++ .+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kq 286 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQ 286 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cc
Confidence 44566677899999999999999998654 1 356799999999999999999999999999999999998 56
Q ss_pred EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec------------CCCCeEEEEEcCCCCEEEEEE-
Q 004203 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD------------FYRPIASIAFHASGELLAVAS- 210 (768)
Q Consensus 144 ~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~------------h~~~V~svafSPDG~~LatgS- 210 (768)
.+.--++.|..+.++| |+++.+....|+.|.+....+-+...++. ..+-.+.++++|.-+.++..+
T Consensus 287 fLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 287 FLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred cccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 6666788999999999 99999999999999999886655444432 123456788999544444444
Q ss_pred CCeEEEEEcCCCccccCCeEeec--------CCCCeEEEEEccCCCeEEEE
Q 004203 211 GHKLYIWRYNMREETSSPRIVLR--------TRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 211 dd~I~IWDl~t~~~~~~~~~l~~--------h~~~V~sVaFSPDG~~LlaS 253 (768)
.+.|++||+-+............ +...++.++++-.|.++++.
T Consensus 366 ~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~ 416 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL 416 (792)
T ss_pred CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence 56799999987765432222111 12357788888888866553
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.44 E-value=6.8e-06 Score=86.92 Aligned_cols=163 Identities=13% Similarity=0.160 Sum_probs=121.7
Q ss_pred EEEEEeCCCeEEEEeCCCCC----CCC---CCC---CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE--EEecCCC
Q 004203 83 GLASWVEAESLHHLRPKYCP----LSP---PPR---STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLHGHRR 150 (768)
Q Consensus 83 ~LvSgs~DgsIrlWd~~t~~----L~g---H~~---~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--~l~gH~g 150 (768)
.++....+|.|.++...... |.+ -+- ...++.|++.+..+++.-.+|.+.+-+.......+ .++.|.-
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 45566677788877765431 221 111 24588999999999999999999977765555444 7899999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEE--ecCCCCeEEEEEcC-CCCEEEEEECCe-EEEEEcCCCccc
Q 004203 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGS--RDFYRPIASIAFHA-SGELLAVASGHK-LYIWRYNMREET 225 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s-g~~i~~--l~h~~~V~svafSP-DG~~LatgSdd~-I~IWDl~t~~~~ 225 (768)
..+...|+-.+.+++++|+.|+.+.-||++. ++.+.. ..|...|.++.-+| +..+|++|+.|. |++||.++...
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k- 245 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK- 245 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC-
Confidence 9999999988889999999999999999994 334333 34778888887776 577999999554 99999997654
Q ss_pred cCCeEeecCCCCeEEEEEccCCC
Q 004203 226 SSPRIVLRTRRSLRAVHFHPHAA 248 (768)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPDG~ 248 (768)
|.....-.+.|+.+.++|.-.
T Consensus 246 --Pl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 246 --PLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred --ccccCccccceEEEEecchhh
Confidence 223334458899999999654
No 250
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=2.2e-06 Score=93.37 Aligned_cols=123 Identities=15% Similarity=0.190 Sum_probs=107.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE-EecCCCCcE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPW 153 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~g~V~ 153 (768)
....++++..-+.+++||...+ ++.--..+|+++...|+|++|++|..-+.+..||+++++.... +++..+.|+
T Consensus 215 ~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsir 294 (412)
T KOG3881|consen 215 PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIR 294 (412)
T ss_pred CCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcc
Confidence 3788999999999999999876 2445577899999999999999999999999999999998876 899999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCC
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG 203 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG 203 (768)
++..+| ...++++++-|..|||+|+++.+.+.........+++-+.++-
T Consensus 295 sih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 295 SIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred eEEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence 999999 8899999999999999999997777666666777777776543
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.41 E-value=0.00011 Score=81.20 Aligned_cols=180 Identities=16% Similarity=0.172 Sum_probs=113.9
Q ss_pred EEEecCCCEEEEEe-CCCeEEEEeCCCC-CC-----------------CCCCCCeEEEEECCCCCEEEEEeC-CCeEEEE
Q 004203 75 EAGRDARRGLASWV-EAESLHHLRPKYC-PL-----------------SPPPRSTIAAAFSPDGKTLASTHG-DHTVKII 134 (768)
Q Consensus 75 ~a~~d~g~~LvSgs-~DgsIrlWd~~t~-~L-----------------~gH~~~VtslafSPDG~~LaSgS~-DgtVrVW 134 (768)
.+...+++.|+... .++.|.++++... .+ ..-....+++.|+|||+++++... ...|++|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 33444555555554 5777888877642 10 112345789999999999887643 4589999
Q ss_pred eCCCCe--E--EEEEe-cCCCCcEEEEEccCCCCEEEE-EeCCCeEEEEECC--CCcEE--EEec-----C--CCCeEEE
Q 004203 135 DCQTGS--C--LKVLH-GHRRTPWVVRFHPLNPTIIAS-GSLDHEVRLWNAS--TAECI--GSRD-----F--YRPIASI 197 (768)
Q Consensus 135 Dl~tg~--~--l~~l~-gH~g~V~sVafSP~dg~lLaS-gS~DgtVrLWDl~--sg~~i--~~l~-----h--~~~V~sv 197 (768)
+++... . ...+. ..+...+.+.|+| ++++++. ...+++|.++++. +++.. ..+. . ......+
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 987654 2 12222 3345688999999 7776655 4567889999988 44332 2221 1 1257789
Q ss_pred EEcCCCCEEEEEEC--CeEEEEEcCCC-ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 198 AFHASGELLAVASG--HKLYIWRYNMR-EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 198 afSPDG~~LatgSd--d~I~IWDl~t~-~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+++|||++|+++.. +.|.+|+++.. ........+.......+.+.|+|+|++|+++..
T Consensus 251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 99999999999884 45999999543 222211222223556899999999998888764
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.38 E-value=6.6e-06 Score=93.51 Aligned_cols=141 Identities=11% Similarity=0.095 Sum_probs=121.7
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCC------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 79 DARRGLASWVEAESLHHLRPKYCPL------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~~L------~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
.+...++-|...|.|.+++...+++ -.|.+.|.++.++.+-..|++++.|+.+..|+..+++.+..+++....+
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence 3556777888899999999887632 3799999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCeEEEEEcCC-----CCEEEEEECC--eEEEEEcCCC
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS-----GELLAVASGH--KLYIWRYNMR 222 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~~~V~svafSPD-----G~~LatgSdd--~I~IWDl~t~ 222 (768)
.+++.+| |+..+++++ ++|++||+++++.+.+| +|.++|.++.|.-+ |+++.++... .+.+|-++..
T Consensus 148 ~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 148 SSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred ceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 9999999 899999887 57999999999999987 58889999999887 7777776643 3888877663
No 253
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.37 E-value=3.1e-05 Score=86.14 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=124.7
Q ss_pred CCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCC-eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203 89 EAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (768)
Q Consensus 89 ~DgsIrlWd~~t~--~L~gH~~~VtslafSPDG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL 165 (768)
..|+..+.+...+ ...+|.+.|.=..+.-+++-++.|..|| .+-|||.++++. +.+.+.-+.|..+..+| +|+.+
T Consensus 339 SRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~-dGK~~ 416 (668)
T COG4946 339 SRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSP-DGKKV 416 (668)
T ss_pred ecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcC-CCcEE
Confidence 3455555555433 2347888899999999999999999999 899999998875 44555677899999999 99999
Q ss_pred EEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC-C----eEEEEEcCCCccccCCeEeecCCCCeE
Q 004203 166 ASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-H----KLYIWRYNMREETSSPRIVLRTRRSLR 239 (768)
Q Consensus 166 aSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd-d----~I~IWDl~t~~~~~~~~~l~~h~~~V~ 239 (768)
+.+.....|.+.|+.+|.....-. ..+-|+.++|||+++++|.+-- + .|+++|+..++... +......-.
T Consensus 417 vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~----vTT~ta~Df 492 (668)
T COG4946 417 VVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD----VTTPTAYDF 492 (668)
T ss_pred EEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE----ecCCccccc
Confidence 998888899999999998765533 5678999999999999999873 2 29999999876432 333344456
Q ss_pred EEEEccCCCeEEEEE
Q 004203 240 AVHFHPHAAPLLLTA 254 (768)
Q Consensus 240 sVaFSPDG~~LlaS~ 254 (768)
+-+|.|||++|..-+
T Consensus 493 sPaFD~d~ryLYfLs 507 (668)
T COG4946 493 SPAFDPDGRYLYFLS 507 (668)
T ss_pred CcccCCCCcEEEEEe
Confidence 778999999876544
No 254
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.36 E-value=1.9e-05 Score=87.82 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=110.9
Q ss_pred CCCEEEEEeCCC-eEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 80 ARRGLASWVEAE-SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 80 ~g~~LvSgs~Dg-sIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
+...++-+..|+ .+.++|..+++ +.+.-+.|.++..++||++++.+-..+.|.++|+++|+....=+...+-|..+
T Consensus 370 ~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf 449 (668)
T COG4946 370 DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDF 449 (668)
T ss_pred CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEE
Confidence 445777888888 89999999874 56778899999999999999999999999999999998766656667789999
Q ss_pred EEccCCCCEEEEEeCCC----eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 004203 156 RFHPLNPTIIASGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG 211 (768)
Q Consensus 156 afSP~dg~lLaSgS~Dg----tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd 211 (768)
.||| +++++|.+--+| .|+|+|+..++..........-.+-+|.||+++|..-+.
T Consensus 450 ~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 450 DWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 9999 999999987776 799999999988777655555567789999999988763
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=0.0017 Score=70.86 Aligned_cols=144 Identities=15% Similarity=0.190 Sum_probs=103.5
Q ss_pred EEEEECCCCCEEEEEeC-CCeEEEEeCCC-CeEE--EEEecCCCC----------cEEEEEccCCCCEEEEEeC-CCeEE
Q 004203 111 IAAAFSPDGKTLASTHG-DHTVKIIDCQT-GSCL--KVLHGHRRT----------PWVVRFHPLNPTIIASGSL-DHEVR 175 (768)
Q Consensus 111 tslafSPDG~~LaSgS~-DgtVrVWDl~t-g~~l--~~l~gH~g~----------V~sVafSP~dg~lLaSgS~-DgtVr 175 (768)
+-++++++|++++++.. -+.|.++-+++ |... ..+..|.+. +....+.| +++++++.+. --.|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEE
Confidence 78999999999999877 68899998865 5432 122345555 88889999 8988888654 22599
Q ss_pred EEECCCCcEEEE----ecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcc-ccCCeEe------ecCCCCeEEEE
Q 004203 176 LWNASTAECIGS----RDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREE-TSSPRIV------LRTRRSLRAVH 242 (768)
Q Consensus 176 LWDl~sg~~i~~----l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~-~~~~~~l------~~h~~~V~sVa 242 (768)
+|++..|+.... ++....-.-|.|+|++++.++.+ +++|-+|.++.... ......+ .....+..+|.
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 999998765433 23344567899999999988888 57799999987421 1100011 12356788999
Q ss_pred EccCCCeEEEEEe
Q 004203 243 FHPHAAPLLLTAE 255 (768)
Q Consensus 243 FSPDG~~LlaS~s 255 (768)
.+|||++|.++-.
T Consensus 251 is~dGrFLYasNR 263 (346)
T COG2706 251 ISPDGRFLYASNR 263 (346)
T ss_pred ECCCCCEEEEecC
Confidence 9999998877654
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.9e-05 Score=89.44 Aligned_cols=148 Identities=17% Similarity=0.292 Sum_probs=105.9
Q ss_pred CCCeEEEEeCC--CCCCC-CCCCCeEEEEECCCCCEEEEEeC--CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCC
Q 004203 89 EAESLHHLRPK--YCPLS-PPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT 163 (768)
Q Consensus 89 ~DgsIrlWd~~--t~~L~-gH~~~VtslafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~ 163 (768)
-+.++.+.+++ .+.+. .-.++|+++.|+|+|+.|+++-+ =..+.|||++ ++.+..| ..++=+++-|+| .|+
T Consensus 249 GEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ 324 (566)
T KOG2315|consen 249 GEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGN 324 (566)
T ss_pred ccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCC
Confidence 34567777766 22233 23789999999999998887655 5689999986 5555555 356677899999 999
Q ss_pred EEEEEeCC---CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCCccccCCeEeec
Q 004203 164 IIASGSLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVLR 233 (768)
Q Consensus 164 lLaSgS~D---gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-------dd~I~IWDl~t~~~~~~~~~l~~ 233 (768)
+|+.++-+ |.+-+||+.+.+++..+.... -+-+.|+|||+++++++ |++++||++.....-. ..
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-----~~ 398 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-----KM 398 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-----hh
Confidence 88887654 689999999988877765443 35679999999999886 4669999996653211 11
Q ss_pred CCCCeEEEEEccC
Q 004203 234 TRRSLRAVHFHPH 246 (768)
Q Consensus 234 h~~~V~sVaFSPD 246 (768)
-......+.|-|-
T Consensus 399 f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 399 FKSELLQVEWRPF 411 (566)
T ss_pred hhHhHhheeeeec
Confidence 1114666777663
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.25 E-value=0.00095 Score=74.20 Aligned_cols=211 Identities=12% Similarity=0.104 Sum_probs=122.7
Q ss_pred CeEEEEeCCCCCCCC----CCCCeEEEEECCCCCEEEEEeC----------CCeEEEEeCCCCeEEEEEecCC-------
Q 004203 91 ESLHHLRPKYCPLSP----PPRSTIAAAFSPDGKTLASTHG----------DHTVKIIDCQTGSCLKVLHGHR------- 149 (768)
Q Consensus 91 gsIrlWd~~t~~L~g----H~~~VtslafSPDG~~LaSgS~----------DgtVrVWDl~tg~~l~~l~gH~------- 149 (768)
++|.+.|..+.++.+ -..+ ..+ +||||+.|+.+.. +..|.+||..+++.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 677777877664321 1111 234 9999999998766 7899999999999998886321
Q ss_pred CCcEEEEEccCCCCEEEEEe-C-CCeEEEEECCCCcEEEEecCCCC--------------------------------eE
Q 004203 150 RTPWVVRFHPLNPTIIASGS-L-DHEVRLWNASTAECIGSRDFYRP--------------------------------IA 195 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS-~-DgtVrLWDl~sg~~i~~l~h~~~--------------------------------V~ 195 (768)
.....++++| |+++++... . +..|-+.|+.+++.+..+...+. ..
T Consensus 105 ~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 105 TYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred CccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 1233689999 888777655 3 68999999999877554321110 00
Q ss_pred E--E------------EEcC-CCCEEEEEECCeEEEEEcCCCcccc-CCeEeec--------CCCCeEEEEEccCCCeEE
Q 004203 196 S--I------------AFHA-SGELLAVASGHKLYIWRYNMREETS-SPRIVLR--------TRRSLRAVHFHPHAAPLL 251 (768)
Q Consensus 196 s--v------------afSP-DG~~LatgSdd~I~IWDl~t~~~~~-~~~~l~~--------h~~~V~sVaFSPDG~~Ll 251 (768)
. + .|.+ ||+++.+...+.|++.|+...+... .+..... ....+.-++++|+++++.
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 0 0 1223 6777777777778888864432211 1111110 123344588888888776
Q ss_pred EEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCC-EEEEE
Q 004203 252 LTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE-RISLQ 321 (768)
Q Consensus 252 aS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~-rIv~~ 321 (768)
+...-..-. -...+.+.+.+.+..+........ ...+.+...||+||+ +++..
T Consensus 264 V~~~~~~~~-------------thk~~~~~V~ViD~~t~kvi~~i~----vG~~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 264 LLADQRAKW-------------THKTASRFLFVVDAKTGKRLRKIE----LGHEIDSINVSQDAKPLLYAL 317 (352)
T ss_pred EEecCCccc-------------cccCCCCEEEEEECCCCeEEEEEe----CCCceeeEEECCCCCeEEEEe
Confidence 644210000 001133345555544333222111 123567889999999 66654
No 258
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.24 E-value=5.8e-06 Score=90.43 Aligned_cols=100 Identities=18% Similarity=0.314 Sum_probs=82.0
Q ss_pred eCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE-EEecCCCCcEEEEEccCCCC
Q 004203 88 VEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPT 163 (768)
Q Consensus 88 s~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~g~V~sVafSP~dg~ 163 (768)
++...+.+|+...+ .+.||-.-+++++|+||+++|+++..|..|||-....--.+. -.-||+.-|..++.-+ +.
T Consensus 129 gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~ 206 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NY 206 (390)
T ss_pred CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--Cc
Confidence 34455777776533 467999999999999999999999999999998876544443 3468999999999876 66
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEec
Q 004203 164 IIASGSLDHEVRLWNASTAECIGSRD 189 (768)
Q Consensus 164 lLaSgS~DgtVrLWDl~sg~~i~~l~ 189 (768)
.|+|++.|++|++||+++|+++.++.
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeeecCCCCcEEEEecccCCcccccc
Confidence 69999999999999999999887654
No 259
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.22 E-value=4.7e-05 Score=86.64 Aligned_cols=210 Identities=17% Similarity=0.180 Sum_probs=126.1
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeC---C-CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC--eEEE
Q 004203 103 LSPPPRSTIAAAFSPDGKTLASTHG---D-HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH--EVRL 176 (768)
Q Consensus 103 L~gH~~~VtslafSPDG~~LaSgS~---D-gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg--tVrL 176 (768)
+..-...+..-+|+|+++.++..+. . ..++++|+++++....+. ..+.-...+|+|++.+++++..+|+ .|++
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 3444556788899999998765532 3 469999999987655544 2222334699994444555566666 6888
Q ss_pred EECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe----EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK----LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (768)
Q Consensus 177 WDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~----I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla 252 (768)
.|+.++...+.....+.-..-.|+|||+.|++.++.. |.++|.+...... +......-..-.|+|||++++.
T Consensus 267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r----iT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR----LTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE----eeccCCCCcCccCCCCCCEEEE
Confidence 8998887555333333334678999999999999643 8888887776532 2222222227889999999988
Q ss_pred EEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceE
Q 004203 253 TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRT 332 (768)
Q Consensus 253 S~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~ 332 (768)
.... .+. . .+...+..++........ ..-.-.|.|+++|+.|.+-.... .++.+.
T Consensus 343 ~~~~----~g~--~--------------~i~~~~~~~~~~~~~lt~----~~~~e~ps~~~ng~~i~~~s~~~-~~~~l~ 397 (425)
T COG0823 343 ESSS----GGQ--W--------------DIDKNDLASGGKIRILTS----TYLNESPSWAPNGRMIMFSSGQG-GGSVLS 397 (425)
T ss_pred Eecc----CCc--e--------------eeEEeccCCCCcEEEccc----cccCCCCCcCCCCceEEEeccCC-CCceEE
Confidence 7732 111 0 111111111111111111 01111688999999999976655 455555
Q ss_pred EeccCCCcee
Q 004203 333 QQSLRSSSSV 342 (768)
Q Consensus 333 ~~~~~ss~~~ 342 (768)
.....+....
T Consensus 398 ~~s~~g~~~~ 407 (425)
T COG0823 398 LVSLDGRVSR 407 (425)
T ss_pred EeeccceeEE
Confidence 5555544443
No 260
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.13 E-value=1e-05 Score=86.62 Aligned_cols=170 Identities=13% Similarity=0.096 Sum_probs=116.6
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~~L---~gH~~~VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
.+..++.+++.+.- .+-+-|.++-++ -.--..|.-+.|..|.-+++.+ ..|+.|.+|++...+--..+......+
T Consensus 16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agl 94 (447)
T KOG4497|consen 16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGL 94 (447)
T ss_pred ECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcc
Confidence 34567777777655 555666654321 1113457778899887776654 568899999998888777777777789
Q ss_pred EEEEEccCCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe----EEEEEcCCCccccC
Q 004203 153 WVVRFHPLNP-TIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK----LYIWRYNMREETSS 227 (768)
Q Consensus 153 ~sVafSP~dg-~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~----I~IWDl~t~~~~~~ 227 (768)
..++||| || .++.+..-|-.|.+|.+.+.+....-.....+..++|+|||++.+..+... +.|..-..-....
T Consensus 95 s~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~- 172 (447)
T KOG4497|consen 95 SSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLK- 172 (447)
T ss_pred eeeeECC-CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHH-
Confidence 9999999 66 666677789999999999877665543445668899999999998887422 3332111111111
Q ss_pred CeEeecCCCCeEEEEEccCCCeEE
Q 004203 228 PRIVLRTRRSLRAVHFHPHAAPLL 251 (768)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPDG~~Ll 251 (768)
...-..-..+.+.|+|||..++
T Consensus 173 --~f~~dT~DltgieWsPdg~~la 194 (447)
T KOG4497|consen 173 --EFKLDTIDLTGIEWSPDGNWLA 194 (447)
T ss_pred --hcCCCcccccCceECCCCcEEE
Confidence 1112234678899999999776
No 261
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.09 E-value=0.00013 Score=76.64 Aligned_cols=175 Identities=9% Similarity=-0.018 Sum_probs=118.4
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCC--eEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eE-EE-EEecCCCC
Q 004203 79 DARRGLASWVEAESLHHLRPKYC--PLSPPPRS--TIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SC-LK-VLHGHRRT 151 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~--~L~gH~~~--VtslafSPDG~~LaSgS~DgtVrVWDl~tg-~~-l~-~l~gH~g~ 151 (768)
+....+.-++.|.++++.+++.. .+.-|... +.++.+++|++++++.+....|.+|.++.. +. ++ ........
T Consensus 126 d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~ 205 (344)
T KOG4532|consen 126 DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH 205 (344)
T ss_pred ccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence 34556667778888888877655 34455554 889999999999999999999999988653 22 23 22223334
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEE-----ecCCCCeEEEEEcCCCC-EEEEEEC--CeEEEEEcCCC
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-----RDFYRPIASIAFHASGE-LLAVASG--HKLYIWRYNMR 222 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~-----l~h~~~V~svafSPDG~-~LatgSd--d~I~IWDl~t~ 222 (768)
=.+..|+. ....+|++..||++.|||++.-.. ... -.|.+.+..+.|++-|. -|..-+. ..+++.|+++.
T Consensus 206 gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 206 GFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred ceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 45679998 888999999999999999987432 222 23788999999999775 2333343 45999999988
Q ss_pred ccccCCe----EeecCC-CCeEEEEEccCCCeEEEEE
Q 004203 223 EETSSPR----IVLRTR-RSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 223 ~~~~~~~----~l~~h~-~~V~sVaFSPDG~~LlaS~ 254 (768)
...+... ....|. ..|..-.|+.++..+.+..
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCccccccc
Confidence 6543110 111222 2266666766665444433
No 262
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.07 E-value=1.1e-05 Score=59.95 Aligned_cols=39 Identities=31% Similarity=0.775 Sum_probs=36.9
Q ss_pred CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (768)
Q Consensus 139 g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (768)
|+++..+++|.+.|++++|+| ++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999998
No 263
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=3.2e-05 Score=86.33 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=116.5
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-ecCCCCcEEEEEccCCC-CEEEEEeCCCeEEEEEC
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNP-TIIASGSLDHEVRLWNA 179 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~g~V~sVafSP~dg-~lLaSgS~DgtVrLWDl 179 (768)
+|.+|.+.|..+.|+..|..|++++.|..|.+||...++....| .||...|....|-|..+ .-+++.+.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 57899999999999999999999999999999999988876555 57888888888887544 46888999999999887
Q ss_pred CCCcEEE-E---ecCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccccCCeEeecCCC---CeEEEEEccCCCeE
Q 004203 180 STAECIG-S---RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRR---SLRAVHFHPHAAPL 250 (768)
Q Consensus 180 ~sg~~i~-~---l~h~~~V~svafSPDG~-~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~---~V~sVaFSPDG~~L 250 (768)
.....+. + -.|.++|..++.-|+.. -|.+++.+. +.-+|++.............+.. ....++.+|...+.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 6433322 2 35999999999999876 445555444 88899988765432222222233 57899999988866
Q ss_pred EEEEe
Q 004203 251 LLTAE 255 (768)
Q Consensus 251 laS~s 255 (768)
++.+.
T Consensus 297 faVgG 301 (559)
T KOG1334|consen 297 FAVGG 301 (559)
T ss_pred cccCC
Confidence 55554
No 264
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.00 E-value=4.1e-05 Score=83.91 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=83.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS- 187 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~- 187 (768)
.|..+..+......-..++.+.+.+|....+.+ ..+-||-.-+..|+|+| |+++|+++.+|..|++-....--.+..
T Consensus 112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 112 AISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred eeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhh
Confidence 344444443333333445566677777665554 44458999999999999 889999999999999988876665655
Q ss_pred -ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccc
Q 004203 188 -RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET 225 (768)
Q Consensus 188 -l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~ 225 (768)
++|..-|..++.-++.. |++++ |+++++||+.+++..
T Consensus 190 clGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 190 CLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ccccHhheeeeeeccCce-eeecCCCCcEEEEecccCCcc
Confidence 57999999999887655 55655 556999999999864
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.98 E-value=0.00083 Score=70.78 Aligned_cols=168 Identities=13% Similarity=0.006 Sum_probs=112.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC--C---CCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203 80 ARRGLASWVEAESLHHLRPKYCP--L---SPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~--L---~gH~~~VtslafSPD-G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~ 153 (768)
....|+.++..|...+|...+.+ + ..|...|+-+.=..| .-.+..++.|.++++.+++.+.....+....-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 55678888888899999887552 1 123332221111111 23466789999999999876543333222222378
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEE---ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcccc--
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS---RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETS-- 226 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~-~i~~---l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~-- 226 (768)
++.+++ |++++++.++...|.+|.+.... .+.. ....+.-.+..|+.....+|++.. +.+.|||++......
T Consensus 163 s~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 163 SLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 899999 99999999999999999997532 2222 123445567889999999999995 559999998765422
Q ss_pred CCeEeecCCCCeEEEEEccCCC
Q 004203 227 SPRIVLRTRRSLRAVHFHPHAA 248 (768)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPDG~ 248 (768)
+......|.+.++.+.|++-|.
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred hcccCCCCCCceEEEEecCCCc
Confidence 1112344789999999998664
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.97 E-value=0.00026 Score=76.60 Aligned_cols=147 Identities=12% Similarity=0.153 Sum_probs=104.8
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE---EEEEecC-----CCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLHGH-----RRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (768)
Q Consensus 105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~---l~~l~gH-----~g~V~sVafSP~dg~lLaSgS~DgtVrL 176 (768)
.|+--|+++.++.|+..++++ +|-.|.+|+++--.. +..++.+ +.-|++..|||..-+.++..+..|+|+|
T Consensus 162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 578889999999999998876 567899999864321 2333333 2457888999988889999999999999
Q ss_pred EECCCCcEE----EEec-------------CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCC----
Q 004203 177 WNASTAECI----GSRD-------------FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR---- 235 (768)
Q Consensus 177 WDl~sg~~i----~~l~-------------h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~---- 235 (768)
.|++....- +.+. .-..|..+.|+++|+++++-..-+|++||+....... ....-|.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv--~t~~vh~~lr~ 318 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPV--ETYPVHEYLRS 318 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcc--eEEeehHhHHH
Confidence 999954321 1111 1235788999999999998888889999996554321 1222221
Q ss_pred --------C---CeEEEEEccCCCeEEEEE
Q 004203 236 --------R---SLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 236 --------~---~V~sVaFSPDG~~LlaS~ 254 (768)
. .-..++|+.++.++++++
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGs 348 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGS 348 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEeccc
Confidence 2 235788999998666554
No 267
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=7.4e-06 Score=96.09 Aligned_cols=210 Identities=16% Similarity=0.137 Sum_probs=140.3
Q ss_pred CCcceecccccccccCCCccccceeecCCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCC
Q 004203 33 SRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPR 108 (768)
Q Consensus 33 sk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~ 108 (768)
++|..|++....+..-+...+..+.+.+.+. .....+.+.+...|+.|.-.|.|++++..++ ...+|..
T Consensus 1072 ~~y~gV~g~~~dr~~IFSRFr~w~~frd~~~-------~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S 1144 (1516)
T KOG1832|consen 1072 SFYSGVHGNRRDRQFIFSRFRSWRSFRDETA-------LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS 1144 (1516)
T ss_pred CcccccccCcccchhhHhhcccchhhhcccc-------ceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc
Confidence 3455555555555444444444444443331 2333444557888999999999999999988 3668999
Q ss_pred CeEEEEECCCCCEEEEEeCCC--eEEEEeCCC-CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 004203 109 STIAAAFSPDGKTLASTHGDH--TVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~Dg--tVrVWDl~t-g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i 185 (768)
.|+-+.-+.||..+++.+.-. ...+|++.+ +.....|.+ -.++.|+. ....-+.|..-....|||++++...
T Consensus 1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred ccccccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhh-hHHHHHhcccccceEEEecccCcHH
Confidence 999999999999887665533 578999854 455566653 34578887 4443344444456889999998776
Q ss_pred EEe-----cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcC
Q 004203 186 GSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD 260 (768)
Q Consensus 186 ~~l-----~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~ 260 (768)
.++ .....-++..|+|+.+++.--+ .+||++..+.+. .+.... .--.=.|+|+|..+++-+++||++
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~D~LIlndG----vLWDvR~~~aIh---~FD~ft-~~~~G~FHP~g~eVIINSEIwD~R 1291 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLILNDG----VLWDVRIPEAIH---RFDQFT-DYGGGGFHPSGNEVIINSEIWDMR 1291 (1516)
T ss_pred HHhcCcchhhhhhccccccCCCcceEeeCc----eeeeeccHHHHh---hhhhhe-ecccccccCCCceEEeechhhhhH
Confidence 552 2223347788999988765322 679999886544 111111 222335999999999999999998
Q ss_pred CC
Q 004203 261 SS 262 (768)
Q Consensus 261 sg 262 (768)
+-
T Consensus 1292 TF 1293 (1516)
T KOG1832|consen 1292 TF 1293 (1516)
T ss_pred HH
Confidence 54
No 268
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=5.2e-05 Score=84.74 Aligned_cols=179 Identities=16% Similarity=0.101 Sum_probs=136.1
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCC-CCeE--EEEEe
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQ-TGSC--LKVLH 146 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~~-----L~gH~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~-tg~~--l~~l~ 146 (768)
....+..|++++.|..|.+||..... ..+|...|.-..|-| +.+.|++++.||.|++=.+. ++.+ .+.+.
T Consensus 150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~ 229 (559)
T KOG1334|consen 150 FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA 229 (559)
T ss_pred ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc
Confidence 34578899999999999999998762 358999999999988 66789999999999998764 3433 34556
Q ss_pred cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----cCCC---CeEEEEEcCCCC-EEEEEECCe-EEEE
Q 004203 147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYR---PIASIAFHASGE-LLAVASGHK-LYIW 217 (768)
Q Consensus 147 gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l----~h~~---~V~svafSPDG~-~LatgSdd~-I~IW 217 (768)
.|.+.|..++.-|+....|.+++.|+.+.-+|++.+.+...+ .+.. ....++.+|-.. .+++++.+. +++|
T Consensus 230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY 309 (559)
T KOG1334|consen 230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY 309 (559)
T ss_pred cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence 799999999999988889999999999999999987654432 2223 567889999776 777777665 9999
Q ss_pred EcCCCcccc--------CCeE-eecCCCCeEEEEEccCCCeEEEEEe
Q 004203 218 RYNMREETS--------SPRI-VLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 218 Dl~t~~~~~--------~~~~-l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
|.+.-.... .+.. .....-.|++++|+.++.-++++-+
T Consensus 310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred cccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 987644321 0111 1122457999999988887887765
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.91 E-value=0.00048 Score=86.69 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=99.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCC------------CCC------CCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCe
Q 004203 80 ARRGLASWVEAESLHHLRPKYCPL------------SPP------PRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGS 140 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~L------------~gH------~~~VtslafSPDG~~La-SgS~DgtVrVWDl~tg~ 140 (768)
++...++...++.|++||...+.. .++ -....+++|+|||++|+ +-+.++.|++||++++.
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 455566667788899998865421 111 12356799999998555 44567999999998875
Q ss_pred EEEEEec-------------C--------CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---------
Q 004203 141 CLKVLHG-------------H--------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF--------- 190 (768)
Q Consensus 141 ~l~~l~g-------------H--------~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h--------- 190 (768)
......+ . ......+++++ +++++++-..++.|++||..++......+.
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK 852 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence 4221110 0 11345789999 888888888899999999988776544321
Q ss_pred -----CCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcc
Q 004203 191 -----YRPIASIAFHASGELLAVASG-HKLYIWRYNMREE 224 (768)
Q Consensus 191 -----~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~ 224 (768)
-.....++++++|+++++-+. +.|++||+.+++.
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 124568999999986666554 4599999988764
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.90 E-value=0.00092 Score=84.22 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=92.2
Q ss_pred eEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecC---------------CCCcEEEEEccCCCC-EEEEEeCCC
Q 004203 110 TIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH---------------RRTPWVVRFHPLNPT-IIASGSLDH 172 (768)
Q Consensus 110 VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH---------------~g~V~sVafSP~dg~-lLaSgS~Dg 172 (768)
-.+++|+| ++.++++.+.++.|++||..++... .+.+. -.....++|+| +++ ++++-+.++
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~ 762 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESS 762 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCC
Confidence 36899999 5666677778899999999887643 22221 12355699999 665 666667778
Q ss_pred eEEEEECCCCcEEEEe-------------c-C--------CCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCe
Q 004203 173 EVRLWNASTAECIGSR-------------D-F--------YRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPR 229 (768)
Q Consensus 173 tVrLWDl~sg~~i~~l-------------~-h--------~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~ 229 (768)
.|++||+.++...... + . -.....++|+++|.++++-+ +++|++||..++.......
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence 9999999876532211 0 0 01235789999998666555 4559999998765422000
Q ss_pred ----------EeecCCCCeEEEEEccCCCeEEEE
Q 004203 230 ----------IVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 230 ----------~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
.....-.....|+++++|+.+++-
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 001112357899999999855543
No 271
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=1e-05 Score=94.97 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=122.4
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC-CC-eEEEEEC
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DH-EVRLWNA 179 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~-Dg-tVrLWDl 179 (768)
.+..|....+|++|+-+.++|+.|+..|.|++|++.+|.......+|+.+|+.+..+. +|..+++.+. .. -.-+|++
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhcc
Confidence 3667889999999999999999999999999999999999999999999999999999 6666655443 33 5789998
Q ss_pred CC-CcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCC-eEeecCCCCeEEEEEccCCCeEEEEEee
Q 004203 180 ST-AECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP-RIVLRTRRSLRAVHFHPHAAPLLLTAEV 256 (768)
Q Consensus 180 ~s-g~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~-~~l~~h~~~V~sVaFSPDG~~LlaS~sv 256 (768)
.+ +.....+ ..-.++.|+..-+.-+.|+ .+...+||+.+....... ....+....-+.+.|+|+...++--+-.
T Consensus 1175 ~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvL 1251 (1516)
T KOG1832|consen 1175 SSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVL 1251 (1516)
T ss_pred ccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCcee
Confidence 75 3333333 2345678887766555566 466999999998764421 1112223344788999999988888889
Q ss_pred CCcCCCCcceeE
Q 004203 257 NDLDSSESSLTL 268 (768)
Q Consensus 257 wdl~sg~~~~~L 268 (768)
||++.......+
T Consensus 1252 WDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRF 1263 (1516)
T ss_pred eeeccHHHHhhh
Confidence 999966554433
No 272
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.90 E-value=0.0031 Score=65.84 Aligned_cols=169 Identities=15% Similarity=0.154 Sum_probs=107.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCC-CCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCeEEEEEec-----CCCCc
Q 004203 80 ARRGLASWVEAESLHHLRPKYCPLSP-PPRSTIAAAFS-PDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-----HRRTP 152 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~L~g-H~~~VtslafS-PDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-----H~g~V 152 (768)
.+..+++-...+.|..|+..+++... ......++++. +++ .|+.+..+ .+.++|..+++....+.. .....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCC
Confidence 44455555567788888887763221 11127788888 565 44555554 455669999876544443 23457
Q ss_pred EEEEEccCCCCEEEEEeCC--------CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCC
Q 004203 153 WVVRFHPLNPTIIASGSLD--------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMR 222 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~D--------gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~ 222 (768)
+.+++.| +|++.++.... +.|+.++.. ++.......-...+.++|+||++.|++.. .+.|..+|++..
T Consensus 89 ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 89 NDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence 8899999 88877776543 568888887 66555555556678999999999888766 345999999754
Q ss_pred cc-ccCCeEeec-C--CCCeEEEEEccCCCeEEE
Q 004203 223 EE-TSSPRIVLR-T--RRSLRAVHFHPHAAPLLL 252 (768)
Q Consensus 223 ~~-~~~~~~l~~-h--~~~V~sVaFSPDG~~Lla 252 (768)
.. ......+.. . ....-.+++..+|+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va 200 (246)
T PF08450_consen 167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA 200 (246)
T ss_dssp TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE
T ss_pred ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE
Confidence 33 111122222 1 224788999999985554
No 273
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.00031 Score=80.08 Aligned_cols=158 Identities=14% Similarity=0.127 Sum_probs=106.2
Q ss_pred eEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeC-CC--eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203 92 SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHG-DH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (768)
Q Consensus 92 sIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~-Dg--tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL 165 (768)
.+.++++.++. +..-.+.-..-+|+|||++|+.++. |+ .|+++|+.++...+ +..-.+.-..-.|+| ||+.+
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~i 296 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKI 296 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEE
Confidence 57888887662 2223444556789999998886654 44 57777888777444 443333333568999 77777
Q ss_pred EEEeCC-C--eEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCe--EEEEEcCCCccccCCeEeecCCCCe
Q 004203 166 ASGSLD-H--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHK--LYIWRYNMREETSSPRIVLRTRRSL 238 (768)
Q Consensus 166 aSgS~D-g--tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS--dd~--I~IWDl~t~~~~~~~~~l~~h~~~V 238 (768)
+..+.. | .|+++|.+.+...+.....+.-..-.|+|||++|+..+ ++. |.+.|+.++... .........
T Consensus 297 vf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~----~~lt~~~~~ 372 (425)
T COG0823 297 VFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKI----RILTSTYLN 372 (425)
T ss_pred EEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcE----EEccccccC
Confidence 776543 3 68888888877765554444444778999999999888 444 677776665531 234444555
Q ss_pred EEEEEccCCCeEEEEEe
Q 004203 239 RAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 239 ~sVaFSPDG~~LlaS~s 255 (768)
..-.|.++|+.++..+.
T Consensus 373 e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 373 ESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCCcCCCCceEEEecc
Confidence 66789999998877664
No 274
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.81 E-value=2.7e-05 Score=57.74 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=32.1
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID 135 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWD 135 (768)
++.+|...|++++|+|++++|++++.|++|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4568999999999999999999999999999998
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=2.5e-05 Score=87.84 Aligned_cols=151 Identities=16% Similarity=0.194 Sum_probs=109.9
Q ss_pred CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCe
Q 004203 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173 (768)
Q Consensus 101 ~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-------g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dgt 173 (768)
+.+.||...|..++--.+.+-|++++.|++|++|.++. ..|..+++.|+.+|.++.|-. +-+.+++ .|+.
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CDGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--ccCc
Confidence 45789999999988877889999999999999998853 347788899999999999988 6667664 4888
Q ss_pred EEEEECCCCcEEEEe---cCCCCeEEEEEcC--CCCEEEEEE--CCeEEEEEcCCCccccCCeEe--ecCCCCeEEEEEc
Q 004203 174 VRLWNASTAECIGSR---DFYRPIASIAFHA--SGELLAVAS--GHKLYIWRYNMREETSSPRIV--LRTRRSLRAVHFH 244 (768)
Q Consensus 174 VrLWDl~sg~~i~~l---~h~~~V~svafSP--DG~~LatgS--dd~I~IWDl~t~~~~~~~~~l--~~h~~~V~sVaFS 244 (768)
|++||---+..+... ..++.+..+..-+ +..++..++ ..+++++|.+..+........ .+...-+++++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999998777665432 1223333333223 455555554 345999999998765532222 2335678999999
Q ss_pred cCCCeEEEEE
Q 004203 245 PHAAPLLLTA 254 (768)
Q Consensus 245 PDG~~LlaS~ 254 (768)
+.|++++++-
T Consensus 886 ~~GN~lAa~L 895 (1034)
T KOG4190|consen 886 DKGNKLAAAL 895 (1034)
T ss_pred cCcchhhHHh
Confidence 9999887643
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.79 E-value=0.00031 Score=76.02 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=80.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-Ce----EEEEEecCC------------CCcEEEEEccC-CCCEEEEE
Q 004203 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GS----CLKVLHGHR------------RTPWVVRFHPL-NPTIIASG 168 (768)
Q Consensus 107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-g~----~l~~l~gH~------------g~V~sVafSP~-dg~lLaSg 168 (768)
..-|.++.|..+|.+||+|..+|.|.+|.-+. .+ ....++.|. ..|..+.|.++ +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 44689999999999999999999999996433 22 234444453 45788999873 23467777
Q ss_pred eCCCeEEEEECCCCcE-----------------------------------EEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 004203 169 SLDHEVRLWNASTAEC-----------------------------------IGSR--DFYRPIASIAFHASGELLAVASG 211 (768)
Q Consensus 169 S~DgtVrLWDl~sg~~-----------------------------------i~~l--~h~~~V~svafSPDG~~LatgSd 211 (768)
..|++|++|.+..... .+.+ .|..-|+++.++.|++.++++.+
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 8899999998864211 1111 25556788888888887777766
Q ss_pred CeEEEEEcCC
Q 004203 212 HKLYIWRYNM 221 (768)
Q Consensus 212 d~I~IWDl~t 221 (768)
=+|.+|++.-
T Consensus 185 LRINLWnlei 194 (433)
T KOG1354|consen 185 LRINLWNLEI 194 (433)
T ss_pred eeeeeccccc
Confidence 6677777653
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=4.9e-05 Score=85.54 Aligned_cols=148 Identities=17% Similarity=0.147 Sum_probs=108.3
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~-----------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l 145 (768)
+.++...+++.+.|++|++|.++.. +++.|+++|.++.|-.|-++++++ |+-|.+||.--|+.+..+
T Consensus 743 AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~ 820 (1034)
T KOG4190|consen 743 AIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQM 820 (1034)
T ss_pred hcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhh
Confidence 4456778899999999999998742 467899999999999988887754 789999998767655432
Q ss_pred e-c-CCCCcEEEEEccC-CCCEEEEE-eCCCeEEEEECCCCcEEEEec------CCCCeEEEEEcCCCCEEEEEE-CCeE
Q 004203 146 H-G-HRRTPWVVRFHPL-NPTIIASG-SLDHEVRLWNASTAECIGSRD------FYRPIASIAFHASGELLAVAS-GHKL 214 (768)
Q Consensus 146 ~-g-H~g~V~sVafSP~-dg~lLaSg-S~DgtVrLWDl~sg~~i~~l~------h~~~V~svafSPDG~~LatgS-dd~I 214 (768)
. . ..+.+..+..-|. +..++..| +...+|+++|.+.++....+. .+.-+.+++..+.|++++.+- .|.|
T Consensus 821 ~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci 900 (1034)
T KOG4190|consen 821 EDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI 900 (1034)
T ss_pred hcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence 1 1 1122333333332 34444444 778899999999987665543 234678999999999998886 5559
Q ss_pred EEEEcCCCcccc
Q 004203 215 YIWRYNMREETS 226 (768)
Q Consensus 215 ~IWDl~t~~~~~ 226 (768)
.+.|.++++.+.
T Consensus 901 ~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 901 AILDARNGKVIN 912 (1034)
T ss_pred EEEecCCCceec
Confidence 999999998654
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.75 E-value=0.0021 Score=79.86 Aligned_cols=141 Identities=15% Similarity=0.220 Sum_probs=96.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeC------CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC---CCeEEE
Q 004203 106 PPRSTIAAAFSPDGKTLASTHG------DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL---DHEVRL 176 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS~------DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~---DgtVrL 176 (768)
+...-..++|-.||.+||+.+. -..||||+-+ |+...+-..-.+--.+++|.| .|++||+..+ ...|.+
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEE
Confidence 3345568999999999998775 2589999965 664444333334344689999 9999999776 336777
Q ss_pred EECCCCcEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCe
Q 004203 177 WNASTAECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP 249 (768)
Q Consensus 177 WDl~sg~~i~~l-----~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~ 249 (768)
|.- +|-.-..+ .....|..+.|++|+..||+...+.|++|-..+-..-.+..........+..+.|+|...+
T Consensus 286 fEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 286 FER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred Eec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 764 33332222 2345889999999999999999888999987775532211222233444556999996543
No 279
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.0001 Score=79.71 Aligned_cols=159 Identities=9% Similarity=0.112 Sum_probs=111.0
Q ss_pred EEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-----eEEEEEecCCCCcEEEEE
Q 004203 85 ASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-----SCLKVLHGHRRTPWVVRF 157 (768)
Q Consensus 85 vSgs~DgsIrlWd~~t~--~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg-----~~l~~l~gH~g~V~sVaf 157 (768)
++.+-+..|-+-|.+++ +--..+..|.++.|...+++++.|...|.|..+|++.+ .+...+. |...|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence 45556677778888776 22236778999999998999999999999999999875 3445553 8888988876
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcE---EEEe-cCCCC--eEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc-CCe
Q 004203 158 HPLNPTIIASGSLDHEVRLWNASTAEC---IGSR-DFYRP--IASIAFHASGELLAVASGHK-LYIWRYNMREETS-SPR 229 (768)
Q Consensus 158 SP~dg~lLaSgS~DgtVrLWDl~sg~~---i~~l-~h~~~--V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~-~~~ 229 (768)
-..++.+|++.+.+|+|+|||++.-++ +... +|-.. ..-+-.++....++++++|- .+||.++.+.... .++
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 555678899999999999999998776 4443 34322 22233455556777777666 9999999887543 122
Q ss_pred EeecCCCCeEEEEEc
Q 004203 230 IVLRTRRSLRAVHFH 244 (768)
Q Consensus 230 ~l~~h~~~V~sVaFS 244 (768)
........+.+++|.
T Consensus 387 ~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 387 PYSASEVDIPSVAFD 401 (425)
T ss_pred CCccccccccceehh
Confidence 222233455666664
No 280
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00025 Score=80.53 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=103.3
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC----------C-CeEEEEE
Q 004203 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL----------D-HEVRLWN 178 (768)
Q Consensus 110 VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~----------D-gtVrLWD 178 (768)
-+-+.|||-|.||++-..-| |.+|--++...+..|. |.+ |.-+.||| ..++|++=+. + ..++|||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEE
Confidence 46789999999999988775 8899877776677764 666 88899999 9999998432 1 4799999
Q ss_pred CCCCcEEEEecC---CC-CeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203 179 ASTAECIGSRDF---YR-PIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (768)
Q Consensus 179 l~sg~~i~~l~h---~~-~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla 252 (768)
+++|...+.+.. .. .-.-+.||-|++++|.-..++|.||+..+-.... ...-.-..|....|+|.+..|+.
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec---ccccCCccccCcccCCCcceEEE
Confidence 999998888653 11 2245789999999999999999999876643322 11112357889999999886653
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.68 E-value=0.029 Score=62.62 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=79.3
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEE-e---------CCCeEEEEECCCC
Q 004203 118 DGKTLASTHGD-----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG-S---------LDHEVRLWNASTA 182 (768)
Q Consensus 118 DG~~LaSgS~D-----gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSg-S---------~DgtVrLWDl~sg 182 (768)
++++++..... ++|.+.|.++++.+..+..-.. .+.+ ++| |++.++.+ + ++..|.+||+.+.
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~-P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFL-PNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCC-Ccee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 55555544433 8999999999999988875433 3344 999 66666554 4 5789999999999
Q ss_pred cEEEEecCCCC--------eEEEEEcCCCCEEEEEE---CCeEEEEEcCCCcccc
Q 004203 183 ECIGSRDFYRP--------IASIAFHASGELLAVAS---GHKLYIWRYNMREETS 226 (768)
Q Consensus 183 ~~i~~l~h~~~--------V~svafSPDG~~LatgS---dd~I~IWDl~t~~~~~ 226 (768)
+.+..+..... -..++++|||++|++.. +..+.++|+.+++...
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 99988764332 33789999999999887 3449999999987644
No 282
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0014 Score=74.84 Aligned_cols=158 Identities=13% Similarity=0.140 Sum_probs=105.3
Q ss_pred CCCeEEEEeCCCCCC---C----CCCCCeEEEEECCCCCEE-EEEe--C---------CCeEEEEeCCCCeEEEEEecCC
Q 004203 89 EAESLHHLRPKYCPL---S----PPPRSTIAAAFSPDGKTL-ASTH--G---------DHTVKIIDCQTGSCLKVLHGHR 149 (768)
Q Consensus 89 ~DgsIrlWd~~t~~L---~----gH~~~VtslafSPDG~~L-aSgS--~---------DgtVrVWDl~tg~~l~~l~gH~ 149 (768)
.-..|++|......+ . -....=..+.|++-|.-| +.++ - ..++++++++..++...+. ..
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~ 270 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KE 270 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CC
Confidence 345688888752210 0 011222357788866533 2222 2 3468899988555555554 47
Q ss_pred CCcEEEEEccCCCCEEEE--EeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC----CeEEEEEcCCCc
Q 004203 150 RTPWVVRFHPLNPTIIAS--GSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYNMRE 223 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaS--gS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd----d~I~IWDl~t~~ 223 (768)
++|.++.|+| +++.++. |-.=..+.|+|++ +.++..+. +++-+++-|+|.|++|+.++- |.+-|||+.+.+
T Consensus 271 GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 271 GPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred CCceEEEECC-CCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 8999999999 7765544 5556689999986 45555543 567788999999999998884 349999999876
Q ss_pred cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.+. ... -..-+-+.|+|||++++++.-
T Consensus 348 ~i~---~~~--a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 348 LIA---KFK--AANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred hcc---ccc--cCCceEEEEcCCCcEEEEEec
Confidence 543 111 234466889999999988654
No 283
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.67 E-value=0.0015 Score=73.92 Aligned_cols=153 Identities=10% Similarity=0.134 Sum_probs=109.2
Q ss_pred CeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEe--CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203 91 ESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (768)
Q Consensus 91 gsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS--~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL 165 (768)
..+.++++....+. .-+++|...+|+|+++.|++.+ .+-.+-++|++.. ....+ ..+.=+.+-|+| .++++
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-~~r~i 330 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-HERYI 330 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-cccEE
Confidence 34666666544222 5588999999999999888776 4888999999865 33333 344455678999 88988
Q ss_pred EEEeCC---CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCCccccCCeEeecCC
Q 004203 166 ASGSLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVLRTR 235 (768)
Q Consensus 166 aSgS~D---gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-------dd~I~IWDl~t~~~~~~~~~l~~h~ 235 (768)
+.++-| |.+-+||......+...-.......+.|+||++++.+.. |..|.|||+.....-
T Consensus 331 l~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------- 400 (561)
T COG5354 331 LFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---------- 400 (561)
T ss_pred EEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------
Confidence 887765 579999988765544222233445678999999887765 234999999776531
Q ss_pred CCeEEEEEccCCCeEEEEEeeCC
Q 004203 236 RSLRAVHFHPHAAPLLLTAEVND 258 (768)
Q Consensus 236 ~~V~sVaFSPDG~~LlaS~svwd 258 (768)
..+.+.|.|.|++..+++..+.
T Consensus 401 -el~~~~W~p~~~~~ttsSs~~~ 422 (561)
T COG5354 401 -ELTNITWDPSGQYVTTSSSCPK 422 (561)
T ss_pred -hhhhccccCCcccceeeccCCC
Confidence 4567889999998777776663
No 284
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00083 Score=74.03 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=110.6
Q ss_pred CCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203 103 LSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (768)
Q Consensus 103 L~gH~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s 181 (768)
+.+|...|.+++|||..+ ++..++.+.+|+|.|+++..++..+..+ ..+++++|.-++.++|+.|...|.|.+||++.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 567888999999999666 7889999999999999999998888877 77999999997888888899999999999997
Q ss_pred CcEE-EEec---CCCCeEEEEEc------CCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203 182 AECI-GSRD---FYRPIASIAFH------ASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (768)
Q Consensus 182 g~~i-~~l~---h~~~V~svafS------PDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Ll 251 (768)
.+-. ..+. ...+|..++.- +-|.+ ++++--.+..|.+........+....+..+...+++.++-.+.++
T Consensus 268 ~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl-Lv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 268 PEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL-LVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLL 346 (463)
T ss_pred CCchHhhhhhhhccCcceeecccCccccccccce-EEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEE
Confidence 5431 1111 12334333332 22333 334444577788766554443334445567778888888888888
Q ss_pred EEEee
Q 004203 252 LTAEV 256 (768)
Q Consensus 252 aS~sv 256 (768)
++..-
T Consensus 347 ~tyRs 351 (463)
T KOG1645|consen 347 LTYRS 351 (463)
T ss_pred EEecC
Confidence 88763
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.63 E-value=0.0003 Score=76.12 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=69.5
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (768)
++.+|.+.+.++.|.+..+.|++|..|..|.+||+--.+ ....+.+|.+.|..+..-+ .-+.+.+++.||.|.+||++
T Consensus 192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence 467999999999999999999999999999999986544 3466789999999888777 78899999999999999986
Q ss_pred C
Q 004203 181 T 181 (768)
Q Consensus 181 s 181 (768)
.
T Consensus 271 ~ 271 (404)
T KOG1409|consen 271 V 271 (404)
T ss_pred c
Confidence 4
No 286
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.62 E-value=0.0035 Score=72.24 Aligned_cols=113 Identities=13% Similarity=0.172 Sum_probs=81.0
Q ss_pred CeEEEEECC-CCCEEEEE----eCCCe----EEEEeCCCCeE--E--EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEE
Q 004203 109 STIAAAFSP-DGKTLAST----HGDHT----VKIIDCQTGSC--L--KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVR 175 (768)
Q Consensus 109 ~VtslafSP-DG~~LaSg----S~Dgt----VrVWDl~tg~~--l--~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVr 175 (768)
...++.||- +...+.+. +.+|. -.+|++..++. + ..+ .....|.+++++| +.+.++.|+.||+|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 346777877 44555543 22332 45666654432 1 222 3567899999999 999999999999999
Q ss_pred EEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcc
Q 004203 176 LWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE 224 (768)
Q Consensus 176 LWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~ 224 (768)
+||...+..... ...-..+.++|||+|..++++++ |.+.+||+.....
T Consensus 285 LyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 285 LYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred EEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 999987744333 44556788999999999999997 5599999876643
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.61 E-value=0.00023 Score=74.65 Aligned_cols=96 Identities=23% Similarity=0.365 Sum_probs=73.7
Q ss_pred EEeCCCeEEEEeCCCCC-CC---CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeE-EEEEecCCCCcEEEEEcc
Q 004203 86 SWVEAESLHHLRPKYCP-LS---PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHP 159 (768)
Q Consensus 86 Sgs~DgsIrlWd~~t~~-L~---gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~-l~~l~gH~g~V~sVafSP 159 (768)
.|..-+..+.|+++-.+ +. .-...|++++-+| ....+++|+.||.|-+||.+.... ...++.|+.+++.+-|||
T Consensus 154 ~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 154 NWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred eEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC
Confidence 33444456666665331 11 1223499999999 455677888899999999988754 356688999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCC
Q 004203 160 LNPTIIASGSLDHEVRLWNAST 181 (768)
Q Consensus 160 ~dg~lLaSgS~DgtVrLWDl~s 181 (768)
.++..|++++.||.+.-||..+
T Consensus 234 k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCchheeEecCCCcEEEEcCCC
Confidence 9999999999999999999874
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0015 Score=77.09 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=112.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~--~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVaf 157 (768)
.+..++-|.-+|.|.+.+.... +...|+.. .-+|.++++|+.||+|.|..+-+.+....+. -..++.++++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial 120 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIAL 120 (846)
T ss_pred hcceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEe
Confidence 4566677777888888876543 22234333 5589999999999999999998888777665 3467999999
Q ss_pred ccC----CCCEEEEEeCCCeEEEEECCC---CcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccC---
Q 004203 158 HPL----NPTIIASGSLDHEVRLWNAST---AECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS--- 227 (768)
Q Consensus 158 SP~----dg~lLaSgS~DgtVrLWDl~s---g~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~--- 227 (768)
+|+ ..+.+++|+.-| +.++.-+- ...+......++|.++.|. |.++|.+++.+|++||..++.....
T Consensus 121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCC
Confidence 993 256899999888 87876432 2223233467899999997 7889988899999999988765331
Q ss_pred CeEeecCCCCeEEEEEccCCCeE
Q 004203 228 PRIVLRTRRSLRAVHFHPHAAPL 250 (768)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPDG~~L 250 (768)
+........-...+.|.++.+.+
T Consensus 198 p~~~~R~e~fpphl~W~~~~~LV 220 (846)
T KOG2066|consen 198 PSQSVRPELFPPHLHWQDEDRLV 220 (846)
T ss_pred CCCCCCcccCCCceEecCCCeEE
Confidence 11111112234578888877733
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.0002 Score=82.93 Aligned_cols=143 Identities=12% Similarity=0.150 Sum_probs=103.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---------------EEEEEecCCCCcEEEEEccCCCCEEEEEeC
Q 004203 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSL 170 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~---------------~l~~l~gH~g~V~sVafSP~dg~lLaSgS~ 170 (768)
......+++|+.+..+|+.|+.||.+++..+.+.. .-.++.||.+.|..+.|+. ..+.|-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence 34567899999999999999999999999876521 2256789999999999998 7888889999
Q ss_pred CCeEEEEECCCCcEEEEe---cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccC
Q 004203 171 DHEVRLWNASTAECIGSR---DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246 (768)
Q Consensus 171 DgtVrLWDl~sg~~i~~l---~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPD 246 (768)
+|.|.+|-+-.|.-.... ...+.|.+++|+.||+.++....|+ |.+=.++....-.+ .+. ..-...+.|++|
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLk--g~~l~hv~ws~D 167 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELK--GQLLAHVLWSED 167 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcc--hheccceeeccc
Confidence 999999999888654432 3566899999999999888777444 44433332221110 000 112346889998
Q ss_pred CCeEEEE
Q 004203 247 AAPLLLT 253 (768)
Q Consensus 247 G~~LlaS 253 (768)
.+.+++.
T Consensus 168 ~~~~Lf~ 174 (1189)
T KOG2041|consen 168 LEQALFK 174 (1189)
T ss_pred HHHHHhh
Confidence 8866653
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.55 E-value=0.016 Score=65.70 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=111.3
Q ss_pred ecCCCEEEEEeCCC---------------eEEEEeCCCCC----CCCCCCC--eE-EEEECCCCCEEEEEeCCCeEEEEe
Q 004203 78 RDARRGLASWVEAE---------------SLHHLRPKYCP----LSPPPRS--TI-AAAFSPDGKTLASTHGDHTVKIID 135 (768)
Q Consensus 78 ~d~g~~LvSgs~Dg---------------sIrlWd~~t~~----L~gH~~~--Vt-slafSPDG~~LaSgS~DgtVrVWD 135 (768)
+..+.+|++|+... .+.+||..++. +.....+ .. -+.|+.|.+++|--. ...++|++
T Consensus 80 SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e 158 (561)
T COG5354 80 SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHE 158 (561)
T ss_pred CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEe
Confidence 35677777776544 48999999883 3333333 44 788999888877553 34799999
Q ss_pred CCCCeE----EEEEecCCCCcEEEEEccC-CCCEEEE-----EeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCC
Q 004203 136 CQTGSC----LKVLHGHRRTPWVVRFHPL-NPTIIAS-----GSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGE 204 (768)
Q Consensus 136 l~tg~~----l~~l~gH~g~V~sVafSP~-dg~lLaS-----gS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~ 204 (768)
+ ++.. .+.++ -..|....|+|. ++..|++ ...++.+++|.+..+..+.+.. ..-.-..+.|++.|+
T Consensus 159 ~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~ 235 (561)
T COG5354 159 I-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK 235 (561)
T ss_pred c-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc
Confidence 7 4332 12222 134777889993 3344554 4567899999999777665532 222234688999999
Q ss_pred EEEEEE------C------CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 205 LLAVAS------G------HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 205 ~LatgS------d------d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+|.+-. + ..++|+++..... +... ...++|...+|.|+++.+++..+
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V~~-~~~~pVhdf~W~p~S~~F~vi~g 294 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PVEK-DLKDPVHDFTWEPLSSRFAVISG 294 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccccc---ceec-cccccceeeeecccCCceeEEec
Confidence 776432 1 2288898874432 2222 66889999999999998877654
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.55 E-value=0.00052 Score=73.37 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=104.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCC-----CCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRL 176 (768)
Q Consensus 105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~-----g~V~sVafSP~dg~lLaSgS~DgtVrL 176 (768)
.|..-|.++.|+.|...++++ .|-.|.+|+++--. .+..++.|. .-|++..|+|..-.++...+..|+|+|
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 466678899999988887765 56789999986432 233444443 457888999988889999999999999
Q ss_pred EECCCCcE----EEEe-------------cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecC-----
Q 004203 177 WNASTAEC----IGSR-------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRT----- 234 (768)
Q Consensus 177 WDl~sg~~----i~~l-------------~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h----- 234 (768)
-|++.... ...+ +.-..|..+.|+++|+++++-..-+++|||++..+... ..+.-|
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pi--kTi~~h~~l~~ 326 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPI--KTIPMHCDLMD 326 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCc--eeechHHHHHH
Confidence 99985321 0111 12346788999999999998888889999998876522 222122
Q ss_pred -------CCCe---EEEEEccCCCeEEEEEe
Q 004203 235 -------RRSL---RAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 235 -------~~~V---~sVaFSPDG~~LlaS~s 255 (768)
...| ..+.||.|.+.+++++-
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCccccccccc
Confidence 1222 45788888887766543
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.016 Score=66.33 Aligned_cols=176 Identities=12% Similarity=0.114 Sum_probs=118.2
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCC-CCC-CCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCC
Q 004203 73 IFEAGRDARRGLASWVEAESLHHLRPKYC-PLS-PPPRSTIAAAFSPDGKTLASTHG-----------DHTVKIIDCQTG 139 (768)
Q Consensus 73 l~~a~~d~g~~LvSgs~DgsIrlWd~~t~-~L~-gH~~~VtslafSPDG~~LaSgS~-----------DgtVrVWDl~tg 139 (768)
..+-.+..|.+|++...-| |.+|--..- .+. -....|.-+.|||..+||++-+. -..++|||+.+|
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 3333445667777766554 567765432 111 12335788999999999998764 257999999999
Q ss_pred eEEEEEec--CCCCcEE-EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEECC---
Q 004203 140 SCLKVLHG--HRRTPWV-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH--- 212 (768)
Q Consensus 140 ~~l~~l~g--H~g~V~s-VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSdd--- 212 (768)
...+.|.. ....++. ..||- |++++|--..| +|.||+..+-.++.... .-..|....|+|.+..||.++-.
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred chhcceeccCCCccccceEEecc-CCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 98888865 2233443 58999 99999887765 69999987744433222 23578889999999999999832
Q ss_pred ---eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 213 ---KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 213 ---~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
++.+..+.++..+. ...-+.-.=..+.|-.+|.+|++-.
T Consensus 371 ~parvtL~evPs~~~iR---t~nlfnVsDckLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIR---TKNLFNVSDCKLHWQKSGDYLCVKV 412 (698)
T ss_pred CcceEEEEecCccceee---eccceeeeccEEEeccCCcEEEEEE
Confidence 27788887776543 1111222224577889999887644
No 293
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.52 E-value=0.013 Score=63.86 Aligned_cols=176 Identities=14% Similarity=0.140 Sum_probs=114.2
Q ss_pred eEEEEEecCCCEEEEEeCCCeEE--EEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEeCC-CCeEEE
Q 004203 72 QIFEAGRDARRGLASWVEAESLH--HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQ-TGSCLK 143 (768)
Q Consensus 72 ~l~~a~~d~g~~LvSgs~DgsIr--lWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~-----DgtVrVWDl~-tg~~l~ 143 (768)
.++++-+.+...++--..++.+. +|-.....|.+| -.||+||++|++.-+ .|.|-|||.. +.+.+.
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~ 92 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG 92 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe
Confidence 34444444443333333444433 222222356677 579999999998755 5789999998 778889
Q ss_pred EEecCCCCcEEEEEccCCCCEEEEEe------------------CCCeEEEEECCCCcEEEEec-----CCCCeEEEEEc
Q 004203 144 VLHGHRRTPWVVRFHPLNPTIIASGS------------------LDHEVRLWNASTAECIGSRD-----FYRPIASIAFH 200 (768)
Q Consensus 144 ~l~gH~g~V~sVafSP~dg~lLaSgS------------------~DgtVrLWDl~sg~~i~~l~-----h~~~V~svafS 200 (768)
.+..|+-....+.+.| |++.|+.+. .+..+.+.|..+|+.+.... |+-.+.-++++
T Consensus 93 E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 93 EFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred EecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEec
Confidence 9998887788899999 776555532 12357777889998877632 55689999999
Q ss_pred CCCCEEEEEECC-----e---EEEEEcCCCcc-ccCC-eEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 201 ASGELLAVASGH-----K---LYIWRYNMREE-TSSP-RIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 201 PDG~~LatgSdd-----~---I~IWDl~t~~~-~~~~-~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
++|..++..-.. . +-+++....-. ...+ .....-...+-+|+++++|..+++++
T Consensus 172 ~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 172 GDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred CCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence 999866655421 1 55555443211 0000 00122357899999999999887775
No 294
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0012 Score=72.66 Aligned_cols=94 Identities=16% Similarity=0.224 Sum_probs=78.8
Q ss_pred EEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004203 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS 210 (768)
Q Consensus 131 VrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS 210 (768)
|++.+-.+.+....+.+|+..|+.++|+|.+..++..++.+..|+|.|+++..++..+.....+.+++|+-|....+.++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 66676666666667788889999999999555689999999999999999998888877779999999999888766666
Q ss_pred C--CeEEEEEcCCCcc
Q 004203 211 G--HKLYIWRYNMREE 224 (768)
Q Consensus 211 d--d~I~IWDl~t~~~ 224 (768)
+ |.|.|||++..+.
T Consensus 255 l~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEG 270 (463)
T ss_pred ccCceEEEEEccCCCc
Confidence 3 4599999998764
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.50 E-value=0.029 Score=58.56 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=105.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCC--------CC-CCCCeEEEEECCCCCEEEEEeCC--------CeEEEEeCCCCeEEE
Q 004203 81 RRGLASWVEAESLHHLRPKYCPL--------SP-PPRSTIAAAFSPDGKTLASTHGD--------HTVKIIDCQTGSCLK 143 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~~L--------~g-H~~~VtslafSPDG~~LaSgS~D--------gtVrVWDl~tg~~l~ 143 (768)
+..++.+...+ +.++|..++++ .. .....+++++.++|++.++.... +.|+.++.. ++...
T Consensus 51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence 35555555544 44447776521 12 34568999999999977776553 668888887 66554
Q ss_pred EEecCCCCcEEEEEccCCCCEE-EEEeCCCeEEEEECCCCc--E--EEEe---cCC-CCeEEEEEcCCCCEEEEEE-CCe
Q 004203 144 VLHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAE--C--IGSR---DFY-RPIASIAFHASGELLAVAS-GHK 213 (768)
Q Consensus 144 ~l~gH~g~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~sg~--~--i~~l---~h~-~~V~svafSPDG~~LatgS-dd~ 213 (768)
...+ -...+.++|+| +++.| ++-+..+.|..+|+.... . .+.+ ... +..-.++++.+|++.++.. .++
T Consensus 129 ~~~~-~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 129 VADG-LGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR 206 (246)
T ss_dssp EEEE-ESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred EecC-cccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence 4443 45578899999 77655 456677889999986322 1 1222 222 2367899999998666554 567
Q ss_pred EEEEEcCCCccccCCeEeecCCCCeEEEEE-ccCCCeEEEEE
Q 004203 214 LYIWRYNMREETSSPRIVLRTRRSLRAVHF-HPHAAPLLLTA 254 (768)
Q Consensus 214 I~IWDl~t~~~~~~~~~l~~h~~~V~sVaF-SPDG~~LlaS~ 254 (768)
|.++|.+ ++... .+.-....+++++| -++.+.|.+++
T Consensus 207 I~~~~p~-G~~~~---~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 207 IVVFDPD-GKLLR---EIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEETT-SCEEE---EEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEECCC-ccEEE---EEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 9999987 44322 22223358999999 46767666654
No 296
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.49 E-value=0.0014 Score=71.10 Aligned_cols=174 Identities=14% Similarity=0.190 Sum_probs=126.1
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC-C-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC----CCeEEEEEecC
Q 004203 79 DARRGLASWVEAESLHHLRPKYC-P-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ----TGSCLKVLHGH 148 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~-~-----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~----tg~~l~~l~gH 148 (768)
.....+++.++|.++++|--... + ...-..+++++.+.++-+.|+.|-..|++.-+.+. .....+.+..|
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h 113 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH 113 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence 35667899999999999976532 2 22346789999999999999999999999999653 33445666788
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-----------------------------c------------EEEE
Q 004203 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----------------------------E------------CIGS 187 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-----------------------------~------------~i~~ 187 (768)
...|..+-|+- ...++++.+.|+.+.---.+++ + .+.+
T Consensus 114 ~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 114 QARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred hcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence 88888888887 6777888777764422111111 0 0111
Q ss_pred -ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 188 -RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 188 -l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
-+|.+.+.+++|.+....|.+++.+. +.+||+...+... ....+|...|+.+..-+.-+.+++...
T Consensus 193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~e 260 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGE 260 (404)
T ss_pred EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccC
Confidence 24778899999999999999998554 9999997766533 456778888888887777776655544
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.49 E-value=0.012 Score=62.69 Aligned_cols=178 Identities=16% Similarity=0.133 Sum_probs=110.0
Q ss_pred EEEEEeCCCeEEEEeCCCC--------C-CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC-----
Q 004203 83 GLASWVEAESLHHLRPKYC--------P-LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----- 148 (768)
Q Consensus 83 ~LvSgs~DgsIrlWd~~t~--------~-L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----- 148 (768)
+++..-.|..|.+-..+.. + -+.....-.-++||||+.+||.+...|+|++||+... .+..+...
T Consensus 10 k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~ 88 (282)
T PF15492_consen 10 KLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPG 88 (282)
T ss_pred cEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCC
Confidence 3444445666666655432 1 1233445789999999999999999999999998753 34444321
Q ss_pred --CCCcEEEEEccCC-----CCEEEEEeCCCeEEEEECCCC-----cEEEEec----CCCCeEEEEEcCCCCEEEEEEC-
Q 004203 149 --RRTPWVVRFHPLN-----PTIIASGSLDHEVRLWNASTA-----ECIGSRD----FYRPIASIAFHASGELLAVASG- 211 (768)
Q Consensus 149 --~g~V~sVafSP~d-----g~lLaSgS~DgtVrLWDl~sg-----~~i~~l~----h~~~V~svafSPDG~~LatgSd- 211 (768)
..+|..+.|-+.. ...|+....+|.++-|-+..+ +....+. ....|.++.|+|.-++|++|+.
T Consensus 89 d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~ 168 (282)
T PF15492_consen 89 DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCE 168 (282)
T ss_pred ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccC
Confidence 2456666665422 225666777887777765332 2222222 4678999999999998888761
Q ss_pred ---C--------eEEEEEcCCCcc-----------cc-----------CCeEe----ecCCCCeEEEEEccCCCeEEEEE
Q 004203 212 ---H--------KLYIWRYNMREE-----------TS-----------SPRIV----LRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 212 ---d--------~I~IWDl~t~~~-----------~~-----------~~~~l----~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
+ ++..|.+-+... .. ....+ ......|..|..||||..|++..
T Consensus 169 ~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih 248 (282)
T PF15492_consen 169 QNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH 248 (282)
T ss_pred CCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE
Confidence 1 367776544321 00 00001 11256799999999999777643
Q ss_pred e-----eCCcCC
Q 004203 255 E-----VNDLDS 261 (768)
Q Consensus 255 s-----vwdl~s 261 (768)
- +|++.+
T Consensus 249 ~sG~lsLW~iPs 260 (282)
T PF15492_consen 249 FSGSLSLWEIPS 260 (282)
T ss_pred cCCeEEEEecCc
Confidence 2 666653
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.48 E-value=0.021 Score=62.15 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=109.7
Q ss_pred CCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeC------------------CCeEEEEeCCCCeEEEE-
Q 004203 89 EAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHG------------------DHTVKIIDCQTGSCLKV- 144 (768)
Q Consensus 89 ~DgsIrlWd~~t~-----~L~gH~~~VtslafSPDG~~LaSgS~------------------DgtVrVWDl~tg~~l~~- 144 (768)
..|.|-+||.... ++..|.-.-..+.+.|||+.|+.+-. +-.+.+.|..+|+.+..
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 4678999999832 56677777788999999988876632 33466677888887765
Q ss_pred -E--ecCCCCcEEEEEccCCCCEEEEEeCCC-------eEEEEECCCCcEEEEe--------cCCCCeEEEEEcCCCCEE
Q 004203 145 -L--HGHRRTPWVVRFHPLNPTIIASGSLDH-------EVRLWNASTAECIGSR--------DFYRPIASIAFHASGELL 206 (768)
Q Consensus 145 -l--~gH~g~V~sVafSP~dg~lLaSgS~Dg-------tVrLWDl~sg~~i~~l--------~h~~~V~svafSPDG~~L 206 (768)
+ .-|.-.++.+++.+ ++..++..-..+ -|-+++.. +....+ ...+++-+|++++++.++
T Consensus 155 ~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i 231 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLI 231 (305)
T ss_pred ecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEE
Confidence 4 33777899999999 777666654443 24444433 322222 246789999999999999
Q ss_pred EEEE--CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 207 AVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 207 atgS--dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
++.+ .+.+.+||..++.... ...-..+..++-.+++ ++++++
T Consensus 232 a~tsPrGg~~~~~d~~tg~~~~-----~~~l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 232 AVTSPRGGRVAVWDAATGRLLG-----SVPLPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EEECCCCCEEEEEECCCCCEee-----ccccCceeeeeecCCc-eEEeCC
Confidence 9888 4559999999987533 2234567778877777 455444
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.46 E-value=0.043 Score=58.71 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=88.8
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCC--eEEEEE---ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 004203 113 AAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVL---HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS 187 (768)
Q Consensus 113 lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l---~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~ 187 (768)
++.+.||+.||.. .|..|.|-..++. .++... +...-.-+.++||| |+.+||.+...|+|+++|+...+....
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEc
Confidence 5667899988865 4556666654432 222222 22233466799999 999999999999999999976443222
Q ss_pred e-------cCCCCeEEEEEcCCC-------CEEEEEECCeEEEEEcCCC--cc--ccCCeEeec-CCCCeEEEEEccCCC
Q 004203 188 R-------DFYRPIASIAFHASG-------ELLAVASGHKLYIWRYNMR--EE--TSSPRIVLR-TRRSLRAVHFHPHAA 248 (768)
Q Consensus 188 l-------~h~~~V~svafSPDG-------~~LatgSdd~I~IWDl~t~--~~--~~~~~~l~~-h~~~V~sVaFSPDG~ 248 (768)
- .....|..+.|-+-. ++|+..-.|.++-|-+..+ +. ....+.+.. ....|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 1 123567777776532 3555555666666655322 11 111122222 367899999999999
Q ss_pred eEEEEEe
Q 004203 249 PLLLTAE 255 (768)
Q Consensus 249 ~LlaS~s 255 (768)
.|++++.
T Consensus 161 LLlVgG~ 167 (282)
T PF15492_consen 161 LLLVGGC 167 (282)
T ss_pred EEEEecc
Confidence 8887766
No 300
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.0012 Score=76.63 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=79.6
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC-------------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC-------------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ 137 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~-------------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~ 137 (768)
......+++.++.||.+++..+.+. +|.||+..|.-+.|+.+.+.|-+...+|.|.+|-+-
T Consensus 22 WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly 101 (1189)
T KOG2041|consen 22 WNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY 101 (1189)
T ss_pred EcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence 3456788999999999999987643 467999999999999999999999999999999987
Q ss_pred CCeEEEEE--ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203 138 TGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (768)
Q Consensus 138 tg~~l~~l--~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (768)
.|.-...+ .-....|.+++|.- ||..+...-.||.|.+=.++
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeec
Confidence 66432211 12345688999999 88888877777776654443
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.41 E-value=0.0016 Score=69.76 Aligned_cols=117 Identities=16% Similarity=0.268 Sum_probs=82.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----EEEEEecCC------------CCcEEEEEccCC-CCEEEE
Q 004203 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-----CLKVLHGHR------------RTPWVVRFHPLN-PTIIAS 167 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-----~l~~l~gH~------------g~V~sVafSP~d-g~lLaS 167 (768)
....|+++.|...|.+|++|...|.|.+|.-+... ....|++|. ..|..+.|..+. ...++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999765422 233456664 347778886523 346777
Q ss_pred EeCCCeEEEEECCCCcE-------------------------------------E-----E--EecCCCCeEEEEEcCCC
Q 004203 168 GSLDHEVRLWNASTAEC-------------------------------------I-----G--SRDFYRPIASIAFHASG 203 (768)
Q Consensus 168 gS~DgtVrLWDl~sg~~-------------------------------------i-----~--~l~h~~~V~svafSPDG 203 (768)
...|++|+||.+..... + + .-.|..-++++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 88899999998864310 0 0 01244557788898888
Q ss_pred CEEEEEECCeEEEEEcCCC
Q 004203 204 ELLAVASGHKLYIWRYNMR 222 (768)
Q Consensus 204 ~~LatgSdd~I~IWDl~t~ 222 (768)
+.++++.+=+|.+|++...
T Consensus 185 et~lSaDdLrINLWnl~i~ 203 (460)
T COG5170 185 ETLLSADDLRINLWNLEII 203 (460)
T ss_pred heeeeccceeeeecccccc
Confidence 8888777777888877543
No 302
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.36 E-value=0.00043 Score=87.05 Aligned_cols=140 Identities=11% Similarity=0.148 Sum_probs=111.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE
Q 004203 80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~ 153 (768)
....-++++.||+|++|....++ ..+. ..|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|.....
T Consensus 2219 ~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2219 SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALS 2296 (2439)
T ss_pred CCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCcccc
Confidence 34566788888888888876542 2344 789999999999999999999999999986 566777888998888
Q ss_pred EEEEccCCCCEEEEEe---CCCeEEEEECCCCc---EEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004203 154 VVRFHPLNPTIIASGS---LDHEVRLWNASTAE---CIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET 225 (768)
Q Consensus 154 sVafSP~dg~lLaSgS---~DgtVrLWDl~sg~---~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~ 225 (768)
.++|-. ..+++.+ .++.+.+||..-.. ++. ..|.+.++++++-|..+.|++|+.++ |++||++..+..
T Consensus 2297 Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2297 DFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred ceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 888854 6677654 46789999975422 233 67999999999999999999999554 999999988753
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.00055 Score=74.18 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=94.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeE---EEEEecC
Q 004203 81 RRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC---LKVLHGH 148 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~--------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~~---l~~l~gH 148 (768)
+..++.|...|.|...|++.. +..-|...|+++..-. ++++|.+.+-+|+|++||++--++ +..+.||
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH 343 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH 343 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc
Confidence 566788899999999999865 1235889999998887 889999999999999999987666 8889999
Q ss_pred CCCcE--EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-----CeEEEEEc
Q 004203 149 RRTPW--VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-----PIASIAFH 200 (768)
Q Consensus 149 ~g~V~--sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~-----~V~svafS 200 (768)
-..-. .+..++ ....+++++.|...|||.++.|..+.++.... .+.+++|.
T Consensus 344 vN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 344 VNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 65333 334556 66788889999999999999999998876543 44455554
No 304
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.33 E-value=0.015 Score=64.56 Aligned_cols=231 Identities=16% Similarity=0.177 Sum_probs=129.9
Q ss_pred CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-c-------C---------C
Q 004203 90 AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-G-------H---------R 149 (768)
Q Consensus 90 DgsIrlWd~~t~~---L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-g-------H---------~ 149 (768)
.+.+.++|+.+++ +......+....|||||+.++... ++.|++++..+++..+.-. | - -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 4568889998873 333356799999999999999886 4799999988875443221 2 0 1
Q ss_pred CCcEEEEEccCCCCEEEEEeCCC------------------------------------eEEEEECCCCcEEEE--e---
Q 004203 150 RTPWVVRFHPLNPTIIASGSLDH------------------------------------EVRLWNASTAECIGS--R--- 188 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~Dg------------------------------------tVrLWDl~sg~~i~~--l--- 188 (768)
+.-..+-||| |++.|+....|. .+.++|+.+++.... .
T Consensus 101 ~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 101 DRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred ccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 1234588999 888888754331 244456655543221 1
Q ss_pred -cCCCCeEEEEEcCCCC-EEEEEEC---Ce--EEEEEcCCCccccCCeEeecCCCCe---EEEEEc-cCCCeEEEEEeeC
Q 004203 189 -DFYRPIASIAFHASGE-LLAVASG---HK--LYIWRYNMREETSSPRIVLRTRRSL---RAVHFH-PHAAPLLLTAEVN 257 (768)
Q Consensus 189 -~h~~~V~svafSPDG~-~LatgSd---d~--I~IWDl~t~~~~~~~~~l~~h~~~V---~sVaFS-PDG~~LlaS~svw 257 (768)
.....+..+.|.++++ +++...+ +. +.++|..++.... .........| ....|. +++..++......
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~--~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV--VLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE--EEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE--EEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 1334678899999999 5555442 22 7888887765422 1122223333 355554 7777776665522
Q ss_pred CcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce-EEEEecCCCEEEEEecC-CCCCcceEEec
Q 004203 258 DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTE-HDSGATRTQQS 335 (768)
Q Consensus 258 dl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil-~psFSpDG~rIv~~~~d-~~~Gs~~~~~~ 335 (768)
. + ..+.+.+...+....|..+ ...+. ...++++++.|+|.-+. ...-.-++...
T Consensus 258 G---------------~-----~hly~~~~~~~~~~~lT~G----~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 258 G---------------Y-----RHLYLYDLDGGKPRQLTSG----DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp S---------------S-----EEEEEEETTSSEEEESS-S----SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred C---------------C-----cEEEEEcccccceeccccC----ceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 1 1 1223322222211111111 22232 57899999999998554 33445566666
Q ss_pred cC-CCceeeeeccc
Q 004203 336 LR-SSSSVRLLTYS 348 (768)
Q Consensus 336 ~~-ss~~~rl~~~~ 348 (768)
++ ++..++|+...
T Consensus 314 ~~~~~~~~~LT~~~ 327 (353)
T PF00930_consen 314 LDSGGEPKCLTCED 327 (353)
T ss_dssp TTETTEEEESSTTS
T ss_pred eCCCCCeEeccCCC
Confidence 66 66666555433
No 305
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.30 E-value=0.0074 Score=75.16 Aligned_cols=172 Identities=13% Similarity=0.211 Sum_probs=113.5
Q ss_pred cCCCEEEEEeCCCeEEEE----eCCCCC--C-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC--------------
Q 004203 79 DARRGLASWVEAESLHHL----RPKYCP--L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-------------- 137 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlW----d~~t~~--L-~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~-------------- 137 (768)
.+...++....+|.|-+. +..... . ..-...|.+++||||+.+|+..+.+++|.+.+..
T Consensus 85 ~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~ 164 (928)
T PF04762_consen 85 ADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF 164 (928)
T ss_pred cCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence 355667777778888777 544442 2 2345689999999999999999999998887531
Q ss_pred -C--------CeEEEEEecC------------------------CCCcEEEEEccCCCCEEEEEeC---C---CeEEEEE
Q 004203 138 -T--------GSCLKVLHGH------------------------RRTPWVVRFHPLNPTIIASGSL---D---HEVRLWN 178 (768)
Q Consensus 138 -t--------g~~l~~l~gH------------------------~g~V~sVafSP~dg~lLaSgS~---D---gtVrLWD 178 (768)
. |+....|.|. ...-..++|-. ||.++|..+. + ..+|+|+
T Consensus 165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEEC
Confidence 0 1112222221 11223578988 9999998764 2 4799999
Q ss_pred CCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeEee--cCCCCeEEEEEccCCCeEE
Q 004203 179 ASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIVL--RTRRSLRAVHFHPHAAPLL 251 (768)
Q Consensus 179 l~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd--d~--I~IWDl~t~~~~~~~~~l~--~h~~~V~sVaFSPDG~~Ll 251 (768)
-+ |+...+-. ..+--.+++|-|.|.+||+... ++ |.+|.-+.-+... +.+. .....|..+.|++|+..|+
T Consensus 244 Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge--F~l~~~~~~~~v~~l~Wn~ds~iLA 320 (928)
T PF04762_consen 244 RE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE--FTLRFDPEEEKVIELAWNSDSEILA 320 (928)
T ss_pred CC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee--EecCCCCCCceeeEEEECCCCCEEE
Confidence 76 66655543 2333457899999999998873 33 7777644332211 2222 3456799999999999776
Q ss_pred EEE
Q 004203 252 LTA 254 (768)
Q Consensus 252 aS~ 254 (768)
...
T Consensus 321 v~~ 323 (928)
T PF04762_consen 321 VWL 323 (928)
T ss_pred EEe
Confidence 644
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.28 E-value=0.013 Score=72.05 Aligned_cols=174 Identities=13% Similarity=0.156 Sum_probs=112.8
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC----C-----------
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ----T----------- 138 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~~L---~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~----t----------- 138 (768)
.......++....+|.|.+-|.++..+ ..-...|.+++||||+++++..+.++++.+-+-. .
T Consensus 76 fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~ 155 (1265)
T KOG1920|consen 76 FLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERK 155 (1265)
T ss_pred EecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccc
Confidence 334566677777888888888887743 2346789999999999999999998888776430 0
Q ss_pred --------CeEEEEEecCCC---------------------CcEEEEEccCCCCEEEEEe----CC-CeEEEEECCCCcE
Q 004203 139 --------GSCLKVLHGHRR---------------------TPWVVRFHPLNPTIIASGS----LD-HEVRLWNASTAEC 184 (768)
Q Consensus 139 --------g~~l~~l~gH~g---------------------~V~sVafSP~dg~lLaSgS----~D-gtVrLWDl~sg~~ 184 (768)
|+....|.|..+ .=..|.|-- ||+++|... .+ +.|++||-+ |..
T Consensus 156 sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~L 233 (1265)
T KOG1920|consen 156 SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GAL 233 (1265)
T ss_pred cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chh
Confidence 122223332211 012388888 898888732 23 789999987 544
Q ss_pred EEEe-cCCCCeEEEEEcCCCCEEEEEE----CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203 185 IGSR-DFYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (768)
Q Consensus 185 i~~l-~h~~~V~svafSPDG~~LatgS----dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla 252 (768)
...- ...+--.+++|-|.|.++++-. +++|.++.-+.-....-..........|..++|+.++..|+.
T Consensus 234 ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 234 NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 3332 2334556899999999998765 344888875443321100111222344899999999996655
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.26 E-value=0.0018 Score=77.24 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=111.0
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeC---------CCeEEEEeCCCCeEE
Q 004203 76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGSCL 142 (768)
Q Consensus 76 a~~d~g~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG~~LaSgS~---------DgtVrVWDl~tg~~l 142 (768)
.-+.+++.+..|...|+|.+-|..+. ++..|++.|.+++.. |++|++++. |.-|+|||++..+.+
T Consensus 182 imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 182 IMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred EEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 34567788999999999999999876 578999999887765 899999986 667999999988877
Q ss_pred EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC---CCcE-EEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEE
Q 004203 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS---TAEC-IGS-RDFYRPIASIAFHASGELLAVAS-GHKLYI 216 (768)
Q Consensus 143 ~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~---sg~~-i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~I 216 (768)
.-+.-+.++ .-+.|+|.-...++.++..|...+-|.. +... +.. ......+..++++++|+.|+++. +|.|.+
T Consensus 260 ~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 260 SPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred CCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 767666664 4578999777789999999999999943 3211 122 23445699999999999999998 455999
Q ss_pred EE
Q 004203 217 WR 218 (768)
Q Consensus 217 WD 218 (768)
|-
T Consensus 339 wa 340 (1118)
T KOG1275|consen 339 WA 340 (1118)
T ss_pred ec
Confidence 97
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0032 Score=74.48 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=100.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (768)
Q Consensus 107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~ 186 (768)
...++|++++ ++.|+-|+.+|.|++++... .. .+...|... .- +|.++++++.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 4457788887 78999999999999999763 33 444445443 33 89999999999999999999999888
Q ss_pred EecCCCCeEEEEEcCC-----CCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 187 SRDFYRPIASIAFHAS-----GELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 187 ~l~h~~~V~svafSPD-----G~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.+....++.+++++|| .+.+++|+..++.++.-+--+.. .........++|.++.| .|.+++.+..
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk-~~v~l~~~eG~I~~i~W--~g~lIAWand 178 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNK-DSVVLSEGEGPIHSIKW--RGNLIAWAND 178 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCc-cceeeecCccceEEEEe--cCcEEEEecC
Confidence 8889999999999998 45777777655777654322221 12245566889999999 4666666543
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.25 E-value=0.0011 Score=76.25 Aligned_cols=75 Identities=25% Similarity=0.413 Sum_probs=63.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 004203 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA 182 (768)
Q Consensus 105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg 182 (768)
..+..|.+++++|+.+.|+.|+.||.|.+||...+... +....-.+..++||| +|.+++.|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 56778999999999999999999999999998766432 333445678899999 9999999999999999998654
No 310
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.24 E-value=0.017 Score=64.16 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=65.3
Q ss_pred CCCCCEEEEEe---------CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203 116 SPDGKTLASTH---------GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (768)
Q Consensus 116 SPDG~~LaSgS---------~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~ 186 (768)
|||+++++... ..+.+.|||+++++....... ...+....||| +++.++... ++.|+++++.+++..+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEE
Confidence 68888887643 257899999999875544433 56788899999 899999886 5689999998886554
Q ss_pred EecC------------------CCCeEEEEEcCCCCEEEEEE
Q 004203 187 SRDF------------------YRPIASIAFHASGELLAVAS 210 (768)
Q Consensus 187 ~l~h------------------~~~V~svafSPDG~~LatgS 210 (768)
.... -+.-..+-|+|||++|++..
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 3211 12235688999999999876
No 311
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.20 E-value=0.00081 Score=78.47 Aligned_cols=167 Identities=16% Similarity=0.239 Sum_probs=115.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe-EEEEEecCCCC
Q 004203 81 RRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRT 151 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~-------~L~gH~~~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~g~ 151 (768)
...+++++..+.| +|++... -+-+|.+.|+++-|+| .-..+++++-|..|..||+++-. .+..+..-...
T Consensus 82 ~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred ceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc
Confidence 3456666665444 6777643 2568999999999999 55689999999999999998754 34444433444
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe-cCCCCeEEEEEcCC--CCEEEEEECCeEEEEEcCCCccccC
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHAS--GELLAVASGHKLYIWRYNMREETSS 227 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l-~h~~~V~svafSPD--G~~LatgSdd~I~IWDl~t~~~~~~ 227 (768)
...|+|+-.++..+|+ +..+.|++||++.|.. ...+ .|-..|+.++|..- +..+-...++.|++||+.+... .
T Consensus 161 asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e 237 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--E 237 (1081)
T ss_pred CceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--c
Confidence 5678999867777765 4456799999998653 3333 36677888888753 3334444467799999987655 2
Q ss_pred CeEeecCCCCeEEEEEccCCCeEE
Q 004203 228 PRIVLRTRRSLRAVHFHPHAAPLL 251 (768)
Q Consensus 228 ~~~l~~h~~~V~sVaFSPDG~~Ll 251 (768)
+........+|+--.|-|-|.-.+
T Consensus 238 ~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 238 SKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred cceeccccCcceeccccccCceeE
Confidence 334455567777777777665433
No 312
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.18 E-value=0.004 Score=69.10 Aligned_cols=131 Identities=15% Similarity=0.054 Sum_probs=84.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC-cEEEEE
Q 004203 81 RRGLASWVEAESLHHLRPKYCPLSPPP--RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT-PWVVRF 157 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~~L~gH~--~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~-V~sVaf 157 (768)
+..++....++.+..||..++++.-.. ...... ..++..++.++.|+.|+.+|..+|+.+......... ......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV 318 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence 346777778899999998877422111 111111 125778888999999999999999887665322222 222222
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004203 158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS-GHKLYIW 217 (768)
Q Consensus 158 SP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~-~V~svafSPDG~~LatgS-dd~I~IW 217 (768)
.+..++.++.||.|+++|..+|+.+..+.... .+..--.-.+++ |++++ +++|+.|
T Consensus 319 ---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 ---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence 35688889999999999999999988876433 332221222444 55555 5667765
No 313
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.0026 Score=74.83 Aligned_cols=135 Identities=18% Similarity=0.249 Sum_probs=100.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCC-----------CCEEEEEeCCCeE
Q 004203 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN-----------PTIIASGSLDHEV 174 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~d-----------g~lLaSgS~DgtV 174 (768)
|...-.+++|+|.| +||.|+.. .|.+.|..+.+.+..+.-|...|+.+.|.|.. .-+||++...|.|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 34447789999866 77777765 78899999999999999999999999998721 2267888889999
Q ss_pred EEEECCCCcEEEEec-CCCCeEEEEEcC---CCC-EEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEcc
Q 004203 175 RLWNASTAECIGSRD-FYRPIASIAFHA---SGE-LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (768)
Q Consensus 175 rLWDl~sg~~i~~l~-h~~~V~svafSP---DG~-~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSP 245 (768)
.+||...+..+..+. +.+++..++|-+ +.+ .|++-. ...|.+|+..+++... +..-......++.+.|
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDP 165 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCC
Confidence 999999988877775 566888898876 343 333333 4559999999988644 2222334556677777
No 314
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.17 E-value=0.00086 Score=70.41 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=92.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCe-----EEEEECCCCCEEEEEeC-----CCeEEEEeCCCCeEEEEEecCC
Q 004203 80 ARRGLASWVEAESLHHLRPKYCPLSPPPRST-----IAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGHR 149 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~V-----tslafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~~l~gH~ 149 (768)
.+..++.+..|+.+-+.+.+.-.-..|+.++ .+..+-..+..+.++.- -+..++|+++-.+.+..-+...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 4667888889999888887652111122111 11222223444443321 2356677765443322222223
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--ecCCCCeEEEEEcC-CCCEEEEEECCe-EEEEEcCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHA-SGELLAVASGHK-LYIWRYNM 221 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~h~~~V~svafSP-DG~~LatgSdd~-I~IWDl~t 221 (768)
..|.+++-+|...++++.|+.||.+-|||.+....... ..|+.++..+-|+| ++..|++++.|+ +..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 44899999997777888999999999999998754333 35899999999999 456888888555 99999876
No 315
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.13 E-value=0.0016 Score=76.00 Aligned_cols=135 Identities=17% Similarity=0.325 Sum_probs=96.1
Q ss_pred CeEEEEECCCC--CEEEEEeCCCeEEEEeCCC---CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 004203 109 STIAAAFSPDG--KTLASTHGDHTVKIIDCQT---GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE 183 (768)
Q Consensus 109 ~VtslafSPDG--~~LaSgS~DgtVrVWDl~t---g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~ 183 (768)
.|-.+.|+|.. .+-++......-.+|++.. ......+-||+..|+.+.|+|++..++++++.|-.+..||+++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 36677888732 3333444445667898743 344567789999999999999999999999999999999999864
Q ss_pred -EEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEcc
Q 004203 184 -CIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (768)
Q Consensus 184 -~i~~l~-h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSP 245 (768)
++..+. .......+.|+-....+.+.+ +..|++||++.+... ...+.+|-..|+.+.|..
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~p--l~s~K~~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTP--LCSLKGHVSSVNSIDFNR 211 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcc--eEEecccceeeehHHHhh
Confidence 344432 455667899987554444444 445999999988763 234555777777777764
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.07 E-value=0.0067 Score=72.65 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=116.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 80 ARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~L----~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
+...++-|+-...+...|+.+.+. .--...|+-+.. +++.+.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 344444454455566666665421 112223665555 58999999999999999999999999999999999766
Q ss_pred EEccCCCCEEEEEeC---------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCcc
Q 004203 156 RFHPLNPTIIASGSL---------DHEVRLWNASTAECIGSRDFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREE 224 (768)
Q Consensus 156 afSP~dg~lLaSgS~---------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG-~~LatgS-dd~I~IWDl~t~~~ 224 (768)
.. .|++|++++. |.-|++||++.-+.+.-+.....-.-+.|+|.= ..+++.+ .+...+.|..+-..
T Consensus 224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 55 6788888764 557999999987766555544444567788853 3444444 67799998433222
Q ss_pred cc-CCeEeecCCCCeEEEEEccCCCeEEEEEeeC
Q 004203 225 TS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257 (768)
Q Consensus 225 ~~-~~~~l~~h~~~V~sVaFSPDG~~LlaS~svw 257 (768)
.. ....+......+..+.+|++|+.++++-...
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g 334 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG 334 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence 11 1112222345599999999999887765533
No 317
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.93 E-value=0.02 Score=58.50 Aligned_cols=106 Identities=18% Similarity=0.074 Sum_probs=74.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCC----C
Q 004203 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFY----R 192 (768)
Q Consensus 118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-~h~----~ 192 (768)
++.++++++.++.|+.||..+|+.+..+.. .+.+.... .. .+..++.+..|+.|+.+|..+|+.+... ... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-ee-cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 577888889999999999999999888775 33222211 22 3556666778889999999999998873 211 1
Q ss_pred CeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004203 193 PIASIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (768)
Q Consensus 193 ~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~ 226 (768)
.........++..++++. ++.|..+|+++++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 222333333477777777 6779999999987643
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.91 E-value=0.00023 Score=82.05 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=116.9
Q ss_pred CEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeC----CCeEEEEeCCCC--e--EEEEEe
Q 004203 82 RGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHG----DHTVKIIDCQTG--S--CLKVLH 146 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSP-DG~~LaSgS~----DgtVrVWDl~tg--~--~l~~l~ 146 (768)
-.++.|..+|.|-+-..... ...+|.+.+++++|++ |..+||.|-. |..++|||+.++ . ....|.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 44567778888888777644 3567889999999999 7788887743 778999999886 2 222333
Q ss_pred c-CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcC-CCCEEEEEECCeEEEEE-cCCCc
Q 004203 147 G-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASGHKLYIWR-YNMRE 223 (768)
Q Consensus 147 g-H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSP-DG~~LatgSdd~I~IWD-l~t~~ 223 (768)
+ ......+++|-. +.+++.+|...+.++++|++........-....+..+..+| .+.+++.-.++.|-+|| .++-+
T Consensus 151 ~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnie 229 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIE 229 (783)
T ss_pred cccccCcccccccc-CcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhc
Confidence 3 334456789986 89999999999999999998432222111233556677788 77888888888899999 44433
Q ss_pred cccCCeEeecCC-----CCeEEEEEccCCCeEEEEE
Q 004203 224 ETSSPRIVLRTR-----RSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 224 ~~~~~~~l~~h~-----~~V~sVaFSPDG~~LlaS~ 254 (768)
. ++....+. +.+..++|+|...-++++.
T Consensus 230 n---pl~~i~~~~N~~~~~l~~~aycPtrtglla~l 262 (783)
T KOG1008|consen 230 N---PLQIILRNENKKPKQLFALAYCPTRTGLLAVL 262 (783)
T ss_pred c---HHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence 2 22222232 3489999999765555443
No 319
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.87 E-value=0.017 Score=64.12 Aligned_cols=137 Identities=13% Similarity=0.020 Sum_probs=88.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE-E
Q 004203 81 RRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV-V 155 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~~L~----gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s-V 155 (768)
+..++.++.++.|..+|..+++.. -......... .++..++.++.++.++.+|.++|+.+...... +.+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 456777777888888887776422 1111111222 25778889999999999999999988766532 22222 1
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeE------EEEEcCCCCEEEEEE-CCeEEEEEcCCCccc
Q 004203 156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA------SIAFHASGELLAVAS-GHKLYIWRYNMREET 225 (768)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~------svafSPDG~~LatgS-dd~I~IWDl~t~~~~ 225 (768)
.. .+..++.+..|+.|+.||.++|+.+..+....... ..... + ..++++. ++++..+|..+++..
T Consensus 142 ~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 142 LV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred EE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEe
Confidence 12 24566777889999999999999887765433221 11111 2 3555655 466999999887653
No 320
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.84 E-value=0.08 Score=59.43 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=93.5
Q ss_pred cCCCEEEEEeCCCe--EEEEeCCCC---CCCCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 79 DARRGLASWVEAES--LHHLRPKYC---PLSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 79 d~g~~LvSgs~Dgs--IrlWd~~t~---~L~gH~-~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
++.+.|+.+..|+. +.+.|+.++ +|.... ....+..++++.+.++.......|+..|+++.+....+.-....+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK 125 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc
Confidence 44455555555554 566667666 455443 233467788988998877777899999999998877777777766
Q ss_pred EEEEEcc-CCCCEEEEEeC----------------------CCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCC-EEEE
Q 004203 153 WVVRFHP-LNPTIIASGSL----------------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAV 208 (768)
Q Consensus 153 ~sVafSP-~dg~lLaSgS~----------------------DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~-~Lat 208 (768)
-...|.. .|+..++-.-. ...|.--|+.+|+....+.....+.-+.|+|... +|+.
T Consensus 126 g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 126 GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence 5567753 25555544221 1356677889988877777777888899999554 5666
Q ss_pred EECCe-----EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203 209 ASGHK-----LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (768)
Q Consensus 209 gSdd~-----I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla 252 (768)
+-.|- -+||-+++......+.........+..=-|.|||..|..
T Consensus 206 CHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 206 CHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred eccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 65432 367766654332111111111233444457777776655
No 321
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.82 E-value=0.022 Score=67.67 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=87.0
Q ss_pred CCCCeEEEEECCCCCEEEEEe------CCC--eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC------
Q 004203 106 PPRSTIAAAFSPDGKTLASTH------GDH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD------ 171 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS------~Dg--tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~D------ 171 (768)
....+...++||||+.++... .|+ .|.+++.. +.....+.+. ......|+| +++.+++.+..
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECC-CCCceEEEecCcceEEE
Confidence 335788999999999988765 244 56665653 3333333332 377789999 77766665422
Q ss_pred ------CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEE---EEcCCCc-cccCCeEeecC-CCCeEE
Q 004203 172 ------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI---WRYNMRE-ETSSPRIVLRT-RRSLRA 240 (768)
Q Consensus 172 ------gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~I---WDl~t~~-~~~~~~~l~~h-~~~V~s 240 (768)
+.+++.++..++... ...+.|..+.|+|||+.|++..+++|++ -....++ ....+..+... ...+.+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 234444555544433 3456799999999999999988887776 4433332 11112223222 334688
Q ss_pred EEEccCCCeE
Q 004203 241 VHFHPHAAPL 250 (768)
Q Consensus 241 VaFSPDG~~L 250 (768)
+.|.+++..+
T Consensus 502 l~W~~~~~L~ 511 (591)
T PRK13616 502 LDWRTGDSLV 511 (591)
T ss_pred ceEecCCEEE
Confidence 9999999844
No 322
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.78 E-value=0.06 Score=50.35 Aligned_cols=99 Identities=16% Similarity=0.139 Sum_probs=66.8
Q ss_pred eEEEEECC---CC-CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 004203 110 TIAAAFSP---DG-KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (768)
Q Consensus 110 VtslafSP---DG-~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i 185 (768)
|+++++.. || +.|+.|+.|..||+|+-+ +.+..+.. ...|..+.-.. ...|+++..+|+|-+|+-. +.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~--~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDRS--QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeCc--cee
Confidence 56666655 33 589999999999999843 55666664 45577776665 5789999999999999853 344
Q ss_pred EEecCCCCeEEEEEcC-CC----CEEEEEECCeEE
Q 004203 186 GSRDFYRPIASIAFHA-SG----ELLAVASGHKLY 215 (768)
Q Consensus 186 ~~l~h~~~V~svafSP-DG----~~LatgSdd~I~ 215 (768)
...+.+..+.++++.. ++ .+++.+++|+|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4455555566665543 33 345555566653
No 323
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.76 E-value=0.0058 Score=77.44 Aligned_cols=151 Identities=15% Similarity=0.221 Sum_probs=115.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec-CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 004203 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE 183 (768)
Q Consensus 105 gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~ 183 (768)
.|-..|.++.=+|...+-++|+.||.|++|....++.+..++. -...|+.+.|+. .|+.+..+..||.+.+|.+. .+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Cc
Confidence 3456688888888888889999999999999988887777652 226788899999 88888889999999999997 34
Q ss_pred EEEEe-cCCCCeEEEEEcCCCCEEEEEE---CCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe---
Q 004203 184 CIGSR-DFYRPIASIAFHASGELLAVAS---GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--- 255 (768)
Q Consensus 184 ~i~~l-~h~~~V~svafSPDG~~LatgS---dd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s--- 255 (768)
+.... .|......+.|-. ..+++++ +++ +.+||........ ..-..|...++.+++-|..+.+++++.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc--eeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence 43333 4777778888865 5666665 444 9999976554422 223678999999999999997777765
Q ss_pred --eCCcCC
Q 004203 256 --VNDLDS 261 (768)
Q Consensus 256 --vwdl~s 261 (768)
+||++.
T Consensus 2360 v~l~D~rq 2367 (2439)
T KOG1064|consen 2360 VCLFDIRQ 2367 (2439)
T ss_pred EEEeehHH
Confidence 777763
No 324
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0068 Score=70.30 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=82.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE-EEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 004203 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (768)
Q Consensus 107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~-sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i 185 (768)
...|.-+.|+|.-.+||.+..+|.|-++.+. .+.+.++.-|+..++ +++|.| ||++++.|-.||+|+|.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 4468889999999999999999999999988 888999987888887 999999 8999999999999999999999887
Q ss_pred EE--ecCCCCeEEEEEcC
Q 004203 186 GS--RDFYRPIASIAFHA 201 (768)
Q Consensus 186 ~~--l~h~~~V~svafSP 201 (768)
.. +-....|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 77 44567888888874
No 325
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0049 Score=68.94 Aligned_cols=175 Identities=11% Similarity=0.077 Sum_probs=119.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCC-C------CCCCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEecC--C
Q 004203 80 ARRGLASWVEAESLHHLRPKY-C------PLSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGH--R 149 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t-~------~L~gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH--~ 149 (768)
....+.+++-||.++.|.... . .+..|-..|.+++.+-||.++.|.+. |+.+|++|+++-..+..++-. .
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP 98 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP 98 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence 456788999999999999765 1 24567778999999999999999888 999999999887655443321 1
Q ss_pred CCcEEEEEccCCC--CEEEEEeCCCeEEEEECCCCcEEEE-e--cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC-
Q 004203 150 RTPWVVRFHPLNP--TIIASGSLDHEVRLWNASTAECIGS-R--DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR- 222 (768)
Q Consensus 150 g~V~sVafSP~dg--~lLaSgS~DgtVrLWDl~sg~~i~~-l--~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~- 222 (768)
+.+. ...++.+. .+.++.-.++.+.++|-...-+... + -|..+|..+.+.+.+..+++...++ |.-|.....
T Consensus 99 g~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~ 177 (558)
T KOG0882|consen 99 GFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPF 177 (558)
T ss_pred CceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcc
Confidence 2222 22234111 2333445678999999876654332 2 3888999999999999887776444 999987631
Q ss_pred ----cccc-------CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 223 ----EETS-------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ----~~~~-------~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.... ........+....++.|+|+|..+...+.
T Consensus 178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred cCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 1000 00111223467889999999998766554
No 326
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.71 E-value=0.055 Score=55.28 Aligned_cols=138 Identities=18% Similarity=0.087 Sum_probs=87.9
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCC-----CC---CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 81 RRGLASWVEAESLHHLRPKYCPLS-----PP---PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~~L~-----gH---~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
+..++....++.|..+|..++++. .. ...........+++.++.+..++.|..+|+++|+.+..+.......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 445555667778888887776321 11 0112223333348888999989999999999999988887644221
Q ss_pred -----------EEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc
Q 004203 153 -----------WVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRY 219 (768)
Q Consensus 153 -----------~sVafSP~dg~lLaSgS~Dgt-VrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl 219 (768)
..+.+. ++ .++.+..++. +.+ |+.+++.+.... ...+... ...++..|++.+ ++++.+||+
T Consensus 156 ~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred CcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 122222 34 6666676775 555 999998664333 3333331 456778888777 667999999
Q ss_pred CCCcc
Q 004203 220 NMREE 224 (768)
Q Consensus 220 ~t~~~ 224 (768)
++++.
T Consensus 230 ~tG~~ 234 (238)
T PF13360_consen 230 KTGKV 234 (238)
T ss_dssp TTTEE
T ss_pred CCCCE
Confidence 99875
No 327
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.68 E-value=0.0053 Score=41.97 Aligned_cols=39 Identities=38% Similarity=0.641 Sum_probs=34.5
Q ss_pred CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (768)
Q Consensus 139 g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (768)
+++...+..|...|.++.|++ ++.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 456677788999999999999 779999999999999996
No 328
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.66 E-value=0.39 Score=54.06 Aligned_cols=244 Identities=13% Similarity=0.041 Sum_probs=131.2
Q ss_pred EecCCCEEE-EEeCCCe----EEEEeCCCCCCCCCC--C-CeEEEEECCCCCEEEEEeCC-----------CeEEEEeCC
Q 004203 77 GRDARRGLA-SWVEAES----LHHLRPKYCPLSPPP--R-STIAAAFSPDGKTLASTHGD-----------HTVKIIDCQ 137 (768)
Q Consensus 77 ~~d~g~~Lv-Sgs~Dgs----IrlWd~~t~~L~gH~--~-~VtslafSPDG~~LaSgS~D-----------gtVrVWDl~ 137 (768)
.+.++.+++ +.+..|. |++.|++++++..-. . .-..+.|.+|++.|+....+ ..|++|.+.
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g 210 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG 210 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence 334455444 4454444 999999988533211 1 11239999999988766543 348999988
Q ss_pred CCeE--EEEEecCCCC--cEEEEEccCCCCEEEEEe-C--C-CeEEEEECCCC-----cEEEEecCCCCe-EEEEEcCCC
Q 004203 138 TGSC--LKVLHGHRRT--PWVVRFHPLNPTIIASGS-L--D-HEVRLWNASTA-----ECIGSRDFYRPI-ASIAFHASG 203 (768)
Q Consensus 138 tg~~--l~~l~gH~g~--V~sVafSP~dg~lLaSgS-~--D-gtVrLWDl~sg-----~~i~~l~h~~~V-~svafSPDG 203 (768)
+... ...+.+.... ...+..++ ++++++..+ . + ..+++.|+..+ +..........+ ..+... .+
T Consensus 211 t~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~ 288 (414)
T PF02897_consen 211 TPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GD 288 (414)
T ss_dssp S-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TT
T ss_pred CChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CC
Confidence 7643 3566555544 45678888 777766433 2 2 35899999875 333334433334 334333 44
Q ss_pred CEEEEEECC----eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCC
Q 004203 204 ELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPP 279 (768)
Q Consensus 204 ~~LatgSdd----~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~ 279 (768)
.+++...++ +|...++...........+..+...+.-..+...+.+|++....+...
T Consensus 289 ~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~------------------- 349 (414)
T PF02897_consen 289 RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS------------------- 349 (414)
T ss_dssp EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE-------------------
T ss_pred EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc-------------------
Confidence 444444332 377777777654221224556666544444555666777665533221
Q ss_pred CeEEEecCC-CCCCCCcccccCCCCCCceEEEEecCCCEEEEEecCCCCCcceEEeccCCCceeeee
Q 004203 280 PVICMAGAH-SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLL 345 (768)
Q Consensus 280 ~~V~l~d~~-s~d~~~L~~~~~~~slpil~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~ 345 (768)
.+.+.+.. ......+. .+ ....+......+++..+.+.-++-..+...+..+..+...+.+.
T Consensus 350 -~l~v~~~~~~~~~~~~~--~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 350 -RLRVYDLDDGKESREIP--LP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp -EEEEEETT-TEEEEEEE--SS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred -EEEEEECCCCcEEeeec--CC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 12222211 00000000 00 00111234556788899998899999999999999888776553
No 329
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.58 E-value=0.054 Score=64.23 Aligned_cols=138 Identities=12% Similarity=0.165 Sum_probs=101.3
Q ss_pred CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC------------CEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203 82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG------------KTLASTHGDHTVKIIDCQTGSCLKVL 145 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~----~L~gH~~~VtslafSPDG------------~~LaSgS~DgtVrVWDl~tg~~l~~l 145 (768)
..|+..+....|.+-|..+- .+..|+..|+.+.|.|.. -+||++...|.|.+||...+..+..+
T Consensus 26 ~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l 105 (1062)
T KOG1912|consen 26 SGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL 105 (1062)
T ss_pred cceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh
Confidence 33444445556777776543 466799999999998832 15677777899999999999988889
Q ss_pred ecCCCCcEEEEEccC--CC-CEEEEEeCCCeEEEEECCCCcEEEEecCC-CCeEEEEEcC-CCCEEEEE-ECCeEEEEEc
Q 004203 146 HGHRRTPWVVRFHPL--NP-TIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASIAFHA-SGELLAVA-SGHKLYIWRY 219 (768)
Q Consensus 146 ~gH~g~V~sVafSP~--dg-~lLaSgS~DgtVrLWDl~sg~~i~~l~h~-~~V~svafSP-DG~~Latg-Sdd~I~IWDl 219 (768)
..|..++..++|-+. +. ++++......+|.+|+..+|+........ ....++.++| |.+.+.+- +.|.+.+-+.
T Consensus 106 ~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 106 SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 999999999998762 33 57777777889999999999988876544 3455688998 55555444 4555655554
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.55 E-value=0.064 Score=63.45 Aligned_cols=92 Identities=13% Similarity=0.238 Sum_probs=63.0
Q ss_pred CCeEEEEeCCC-----CeEEEEEecCCCCcEEEEEccCCCCEEEE-EeCCCeEEEEECCCCcE------------EEEec
Q 004203 128 DHTVKIIDCQT-----GSCLKVLHGHRRTPWVVRFHPLNPTIIAS-GSLDHEVRLWNASTAEC------------IGSRD 189 (768)
Q Consensus 128 DgtVrVWDl~t-----g~~l~~l~gH~g~V~sVafSP~dg~lLaS-gS~DgtVrLWDl~sg~~------------i~~l~ 189 (768)
++.|.+.|..+ .+.+..+. -....+.+.++| |+++++. +..+.+|.+.|+.+.+. .....
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 46788999887 34445554 445678899999 7776655 55588999999988553 22233
Q ss_pred CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004203 190 FYRPIASIAFHASGELLAVAS-GHKLYIWRYNM 221 (768)
Q Consensus 190 h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t 221 (768)
....-.-.+|+++|....+-. +..|-.||+.+
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333334578999997555555 55699999876
No 331
>PRK10115 protease 2; Provisional
Probab=96.54 E-value=2.9 Score=51.00 Aligned_cols=228 Identities=12% Similarity=0.011 Sum_probs=118.2
Q ss_pred eEEEEeCCCCC--CCCCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeCCCC--eEEEEEecCCCCcEEEEEccCC
Q 004203 92 SLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQTG--SCLKVLHGHRRTPWVVRFHPLN 161 (768)
Q Consensus 92 sIrlWd~~t~~--L~gH~~~VtslafSPDG~~LaSgS~D------gtVrVWDl~tg--~~l~~l~gH~g~V~sVafSP~d 161 (768)
.|++.|+.++. .......-..++|++|++.|+....+ ..|+++++.++ +....+.+.........+.+.+
T Consensus 154 ~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d 233 (686)
T PRK10115 154 GIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTS 233 (686)
T ss_pred EEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCC
Confidence 47888887764 12222222569999999888776542 47999999988 4455665444444433344436
Q ss_pred CCEEEEEeC---CCeEEEEECC--CCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-C--e--EEEEEcCCCccccCCeEe
Q 004203 162 PTIIASGSL---DHEVRLWNAS--TAECIGSRDFYRPIASIAFHASGELLAVASG-H--K--LYIWRYNMREETSSPRIV 231 (768)
Q Consensus 162 g~lLaSgS~---DgtVrLWDl~--sg~~i~~l~h~~~V~svafSPDG~~LatgSd-d--~--I~IWDl~t~~~~~~~~~l 231 (768)
+++++..+. ++.+.+++.. +++....+.....+..-..+.. ..|..-++ + . |...++.... ....+
T Consensus 234 ~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~---~~~~l 309 (686)
T PRK10115 234 KHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQ---QWEEL 309 (686)
T ss_pred CCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCCcc---cCeEE
Confidence 665554333 4579999953 4443333333332222122333 44444442 2 2 4444544211 12334
Q ss_pred ecC--CCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEeecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceEE
Q 004203 232 LRT--RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRP 309 (768)
Q Consensus 232 ~~h--~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p 309 (768)
..+ ...|..+.++ +++|+......... .+.+.+........+....+. -....
T Consensus 310 ~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~--------------------~l~~~~~~~~~~~~l~~~~~~---~~~~~ 364 (686)
T PRK10115 310 IPPRENIMLEGFTLF--TDWLVVEERQRGLT--------------------SLRQINRKTREVIGIAFDDPA---YVTWI 364 (686)
T ss_pred ECCCCCCEEEEEEEE--CCEEEEEEEeCCEE--------------------EEEEEcCCCCceEEecCCCCc---eEeee
Confidence 444 2468888887 44566665432221 111111100000000000000 01122
Q ss_pred EEe--cCCCEEEEEecCCCCCcceEEeccCCCceeeeeccc
Q 004203 310 SFV--RDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYS 348 (768)
Q Consensus 310 sFS--pDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~~~~ 348 (768)
.++ +++..+.+...+...+...+..+..+...++|....
T Consensus 365 ~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~ 405 (686)
T PRK10115 365 AYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTE 405 (686)
T ss_pred cccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecC
Confidence 333 667788888899999999999888776666555443
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.29 Score=59.07 Aligned_cols=176 Identities=15% Similarity=0.154 Sum_probs=118.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCC-CEEEEEeCCC-----eEEEEeCCCC------eE
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDG-KTLASTHGDH-----TVKIIDCQTG------SC 141 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~---~L~gH~~~VtslafSPDG-~~LaSgS~Dg-----tVrVWDl~tg------~~ 141 (768)
...++..++-+..+|.|-+.+-... .++.+...|...-|.-++ .+|++.+.|. .|+|||++.- .+
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred EcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 4467888899999999988876544 355666663333344444 6788877765 4999998542 23
Q ss_pred E--EEEecC-----CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC----Cc-EEEEecCCCCeEEEEEcCCCCE-EEE
Q 004203 142 L--KVLHGH-----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST----AE-CIGSRDFYRPIASIAFHASGEL-LAV 208 (768)
Q Consensus 142 l--~~l~gH-----~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s----g~-~i~~l~h~~~V~svafSPDG~~-Lat 208 (768)
+ ..+.++ ..++.+++.|. +-+.+|.|-.||.|..+.-.- |. .........+|+.+++..|++. +.+
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence 3 122222 34677889998 788999999999999885321 11 1112335679999999999987 555
Q ss_pred EECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 209 ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 209 gSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
++...|.+|.+.... ........|...+++..|++....++.+++
T Consensus 190 ~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred EecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecC
Confidence 667779999988444 112335567888999999987664444443
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.40 E-value=0.058 Score=63.53 Aligned_cols=143 Identities=12% Similarity=0.005 Sum_probs=102.2
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEE-----
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVL----- 145 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~~-----L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l-~~l----- 145 (768)
......+++-|+..|.+.+++-..+. ..+-.+.+..+..|++..++|.|+..|.|.++-++.+... ..+
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d 120 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD 120 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence 33467889999999999999987763 2345667788889999999999999999999987664321 111
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-----cEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004203 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYN 220 (768)
Q Consensus 146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-----~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~ 220 (768)
+.|...|++++|++ ++..+++|...|+|.+-.+.+. +.+..+...+.|-.+... ..+|.+++--+..+++..
T Consensus 121 ~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r~~Lc~tE 197 (726)
T KOG3621|consen 121 KSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTRCILCQTE 197 (726)
T ss_pred ccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhhhheeecc
Confidence 23678899999999 9999999999999999888772 223334456677666554 334444444444455554
Q ss_pred CC
Q 004203 221 MR 222 (768)
Q Consensus 221 t~ 222 (768)
.+
T Consensus 198 ~e 199 (726)
T KOG3621|consen 198 AE 199 (726)
T ss_pred hh
Confidence 43
No 334
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.94 Score=51.04 Aligned_cols=144 Identities=14% Similarity=0.193 Sum_probs=99.6
Q ss_pred eEEEEECCCCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEE-EEe--CCCeEEEEECCCCcEE
Q 004203 110 TIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIA-SGS--LDHEVRLWNASTAECI 185 (768)
Q Consensus 110 VtslafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLa-SgS--~DgtVrLWDl~sg~~i 185 (768)
-..++.++++..++.. ..+..|.+.|..+.+......- ......++++| +++.+. +-. .++++.+.|-.+++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 4578889988855544 4568999999888777666542 22567799999 554444 444 3789999999999888
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcccc-CCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 186 GSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 186 ~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.+......-..++++|+|+.+++.. ++.|.+.|........ .......-......+.++|+|.++.+...
T Consensus 154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence 8754332228899999999888877 4559999976654431 01111223345678999999997665543
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.34 E-value=0.8 Score=54.52 Aligned_cols=134 Identities=10% Similarity=0.016 Sum_probs=90.6
Q ss_pred EEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----------------------
Q 004203 113 AAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS---------------------- 169 (768)
Q Consensus 113 lafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS---------------------- 169 (768)
+=++|||+.+...+. .+.+.+.|.++.+....+.-.. ....+.++| +++++++.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 445667776644333 5678888998887776665433 456678888 777776664
Q ss_pred ------------------CCCeEEEEECCC-----CcEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcc
Q 004203 170 ------------------LDHEVRLWNAST-----AECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREE 224 (768)
Q Consensus 170 ------------------~DgtVrLWDl~s-----g~~i~~l~h~~~V~svafSPDG~~LatgS--dd~I~IWDl~t~~~ 224 (768)
.++.|.+.|.++ .+.+..+........++++|||+++++++ ++.+.|+|+.+.+.
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 124588888887 45666677777888999999999999988 45599999988653
Q ss_pred cc----CCe----EeecCCCCeEEEEEccCCC
Q 004203 225 TS----SPR----IVLRTRRSLRAVHFHPHAA 248 (768)
Q Consensus 225 ~~----~~~----~l~~h~~~V~sVaFSPDG~ 248 (768)
.- .+. ....-.......+|.++|.
T Consensus 356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ 387 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN 387 (635)
T ss_pred hhhccCCccceEEEeeccCCCcceEEECCCCC
Confidence 10 000 0111133456788999987
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.34 Score=54.56 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=114.2
Q ss_pred EEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEE
Q 004203 83 GLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156 (768)
Q Consensus 83 ~LvSgs~DgsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVa 156 (768)
..+....++.|.+.|..+.+.. .-...-..++++++++.++.+.. +++|.+.|..+++.+.....-..+ ..++
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 4444445688888886554211 11225678999999988887765 789999999999888775433333 7899
Q ss_pred EccCCCCEEE-EEeCCCeEEEEECCCCcEEE-----EecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCcccc
Q 004203 157 FHPLNPTIIA-SGSLDHEVRLWNASTAECIG-----SRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETS 226 (768)
Q Consensus 157 fSP~dg~lLa-SgS~DgtVrLWDl~sg~~i~-----~l~h~~~V~svafSPDG~~LatgSdd----~I~IWDl~t~~~~~ 226 (768)
+.| ++..++ +-..++.|.+.|..+....+ .......-..+.++|+|+++++..++ .+.+.|..+.....
T Consensus 167 ~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 167 VDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred ECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 999 776444 44578899999987766553 12233344678999999987777633 58888888776533
Q ss_pred CCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 227 SPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
.. ...+.. ....+.++|+|+.+...
T Consensus 246 ~~-~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 246 TD-LPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred ec-cccccC-CCCceeECCCCCEEEEE
Confidence 10 112222 56788999999977665
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.20 E-value=0.06 Score=65.53 Aligned_cols=131 Identities=11% Similarity=0.103 Sum_probs=91.1
Q ss_pred CCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCC-cEEEEEccC------CCCEEEEEeCCCeEEEEECCCCc--EEEE-
Q 004203 119 GKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRT-PWVVRFHPL------NPTIIASGSLDHEVRLWNASTAE--CIGS- 187 (768)
Q Consensus 119 G~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g~-V~sVafSP~------dg~lLaSgS~DgtVrLWDl~sg~--~i~~- 187 (768)
.++|+.- .....|+-.|+++|+.+..++.|... |. .+.|+ +....+.|-.++.|..||.+-.. ++..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 3444433 34678999999999999999887754 44 44441 23345667778899999998632 3322
Q ss_pred ---ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 188 ---RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 188 ---l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+.......|++-+.+|. ||+|+ +|.||+||- .+.. ....+.+-..+|..|..+.||+++|+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~-~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDR-LGKR--AKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred ccccccCCCceEEEecCCce-EEEEeCCCcEEeecc-cchh--hhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 22445677888777774 66666 566999994 3322 23345566799999999999999999987
No 338
>PF08953 DUF1899: Domain of unknown function (DUF1899); InterPro: IPR015048 This set of proteins are found in various eukaryotic proteins. The function is unknown. ; PDB: 2B4E_A 2AQ5_A.
Probab=96.19 E-value=0.0027 Score=53.79 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCCCCcceecccccccccCCCccccceeecCCcceeecCCC
Q 004203 30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSF 70 (768)
Q Consensus 30 ~rssk~rnIf~~~akrEis~~~~kv~k~~wd~s~~~~s~s~ 70 (768)
+|.|||||+|++..|+|.+|.+.++....||.+.+.++..|
T Consensus 3 vR~SKfRhv~g~~~kke~~y~~i~vs~~~~d~n~i~~N~kf 43 (65)
T PF08953_consen 3 VRSSKFRHVFGKPAKKEECYDNIRVSTSSWDSNFIAANPKF 43 (65)
T ss_dssp ----TTTT-EEEE--GGGSEES--B-----SS-CEEE-SSE
T ss_pred ccccccccccCccCCccccCcCEEEeCccccCCeEEEcCCE
Confidence 68999999999999999999999999999999998888555
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.18 E-value=0.025 Score=66.53 Aligned_cols=138 Identities=13% Similarity=0.144 Sum_probs=95.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 004203 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~ 184 (768)
|...|.--+++..+++++.|+..|.+++|+-.+++....- .+-.+.+.....|+ +..++|.|+..|.|.++-+..+.+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 4445555566677999999999999999998777643322 23344455667888 888999999999999998877432
Q ss_pred E--EE---e--cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCC-ccccCCeEeecCCCCeEEEEEc
Q 004203 185 I--GS---R--DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMR-EETSSPRIVLRTRRSLRAVHFH 244 (768)
Q Consensus 185 i--~~---l--~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~-~~~~~~~~l~~h~~~V~sVaFS 244 (768)
- .. . .|...|++++|++|++.+++|.+ |+|.+-.++.. ........+..-...|-.+...
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1 11 1 25779999999999999999985 56777777662 1111222344445566555543
No 340
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.13 E-value=0.16 Score=57.14 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=84.6
Q ss_pred CeEEEEECCCCCEEEEE-eC----CCeEEEEeCCCCeEEEE-EecCCCCcEEEEEccCCCCEEEEEeCCC----------
Q 004203 109 STIAAAFSPDGKTLAST-HG----DHTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGSLDH---------- 172 (768)
Q Consensus 109 ~VtslafSPDG~~LaSg-S~----DgtVrVWDl~tg~~l~~-l~gH~g~V~sVafSP~dg~lLaSgS~Dg---------- 172 (768)
.+..+.+||||++|+.+ +. ..+|+++|+++|+.+.. +.... ...+.|.+ +++.|+....|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSD-DGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECT-TSSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeC-CCCEEEEEEeCcccccccCCCC
Confidence 44578999999998855 22 35699999999987643 23221 23489999 767666655332
Q ss_pred -eEEEEECCCCcEE--EEec--CCCC-eEEEEEcCCCCEEEEEE---CC--eEEEEEcCCCc-cccCCeEeecCCCCeEE
Q 004203 173 -EVRLWNASTAECI--GSRD--FYRP-IASIAFHASGELLAVAS---GH--KLYIWRYNMRE-ETSSPRIVLRTRRSLRA 240 (768)
Q Consensus 173 -tVrLWDl~sg~~i--~~l~--h~~~-V~svafSPDG~~LatgS---dd--~I~IWDl~t~~-~~~~~~~l~~h~~~V~s 240 (768)
.|++|++.+.... ..+. .... ...+..++|+++|+..+ .. .+++.|+.... ....+..+......+..
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 4889999876432 3333 2233 67889999999887655 12 28888887751 11123344444444444
Q ss_pred EEEccCCCeEEEE
Q 004203 241 VHFHPHAAPLLLT 253 (768)
Q Consensus 241 VaFSPDG~~LlaS 253 (768)
..-+..+.+++.+
T Consensus 282 ~v~~~~~~~yi~T 294 (414)
T PF02897_consen 282 YVDHHGDRLYILT 294 (414)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEEccCCEEEEee
Confidence 3333344444333
No 341
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.06 E-value=0.27 Score=52.33 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=89.8
Q ss_pred CeEEEEECCCCCEEEEEe---CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE-CCCCcE
Q 004203 109 STIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN-ASTAEC 184 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS---~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWD-l~sg~~ 184 (768)
.+.+.++++||+.++... ....++++..... ....+.+ ..+....|++ ++.+.+....+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g--~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG--GSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC--CccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 689999999999887666 3445666654322 2222232 3677789999 677777766666667763 344433
Q ss_pred EEE-ec---CCCCeEEEEEcCCCCEEEEEE----CCeEEEEEcCCCccc-----cCCeEee-cCCCCeEEEEEccCCCeE
Q 004203 185 IGS-RD---FYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREET-----SSPRIVL-RTRRSLRAVHFHPHAAPL 250 (768)
Q Consensus 185 i~~-l~---h~~~V~svafSPDG~~LatgS----dd~I~IWDl~t~~~~-----~~~~~l~-~h~~~V~sVaFSPDG~~L 250 (768)
... .. ....|..+.++|||..++.-. +++|++--+...... ..+..+. .....+..+.|.+++..+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 221 21 222899999999999888777 445766655322221 1122222 224688999999999866
Q ss_pred EEEE
Q 004203 251 LLTA 254 (768)
Q Consensus 251 laS~ 254 (768)
+.+.
T Consensus 181 V~~~ 184 (253)
T PF10647_consen 181 VLGR 184 (253)
T ss_pred EEeC
Confidence 6554
No 342
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.03 E-value=1.1 Score=50.63 Aligned_cols=139 Identities=14% Similarity=0.200 Sum_probs=80.6
Q ss_pred EEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 004203 112 AAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR 188 (768)
Q Consensus 112 slafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l 188 (768)
.=+|.+||+.|+.++. ...+++.|+++++..+.-.+.........++| +.+.++.......|+-.|+++.+....+
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 3467889988877766 56788889999987666554433343567788 6777777777778999999998876665
Q ss_pred cCCCC-eEEEEE--cCCCCEEEEEE----C-------------------CeEEEEEcCCCccccCCeEeecCCCCeEEEE
Q 004203 189 DFYRP-IASIAF--HASGELLAVAS----G-------------------HKLYIWRYNMREETSSPRIVLRTRRSLRAVH 242 (768)
Q Consensus 189 ~h~~~-V~svaf--SPDG~~LatgS----d-------------------d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVa 242 (768)
..... +....| +.|+..++..- + .+|...|+.+++. ..+.....++..+.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~~~~~wlgH~~ 194 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVFEDTDWLGHVQ 194 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEEEESS-EEEEE
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEEecCccccCcc
Confidence 54443 334556 44566654331 0 1155566666543 34566678899999
Q ss_pred EccCCCeEEEEEe
Q 004203 243 FHPHAAPLLLTAE 255 (768)
Q Consensus 243 FSPDG~~LlaS~s 255 (768)
|+|....++.=+-
T Consensus 195 fsP~dp~li~fCH 207 (386)
T PF14583_consen 195 FSPTDPTLIMFCH 207 (386)
T ss_dssp EETTEEEEEEEEE
T ss_pred cCCCCCCEEEEec
Confidence 9998887777665
No 343
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.071 Score=59.98 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=113.0
Q ss_pred EEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC------CeEEE---------
Q 004203 85 ASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLK--------- 143 (768)
Q Consensus 85 vSgs~DgsIrlWd~~t~------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~t------g~~l~--------- 143 (768)
++..+++.|.++|.... .-+-|..+|..+.+++-+..+++....|.|.-|..+. .+...
T Consensus 116 Vs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy 195 (558)
T KOG0882|consen 116 VSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY 195 (558)
T ss_pred eecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhh
Confidence 35557888999987643 1346999999999999999999999999999999872 11111
Q ss_pred EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------------------------------C
Q 004203 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------------------------------F 190 (768)
Q Consensus 144 ~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---------------------------------h 190 (768)
.+........++.|+| ++..+.+-..|..|++++.++|+.++.+. +
T Consensus 196 ~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~ 274 (558)
T KOG0882|consen 196 GFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH 274 (558)
T ss_pred cccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence 1223345677899999 99999999999999999999987643321 1
Q ss_pred C-CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEE
Q 004203 191 Y-RPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVH 242 (768)
Q Consensus 191 ~-~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVa 242 (768)
. ...+.+.|+..|++|+.++-=+|++.++.+.+..+ +.+....|+-++
T Consensus 275 ~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~r----i~gk~e~ir~~~ 323 (558)
T KOG0882|consen 275 GSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVR----ILGKDEAIRFTR 323 (558)
T ss_pred cCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEE----Eeccchhhhhhh
Confidence 1 12346789999999999998889999999987654 444444444433
No 344
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.94 E-value=0.011 Score=40.23 Aligned_cols=32 Identities=44% Similarity=0.586 Sum_probs=29.3
Q ss_pred CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q 004203 104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIID 135 (768)
Q Consensus 104 ~gH~~~VtslafSPDG~~LaSgS~DgtVrVWD 135 (768)
..|...|.++.|++++.++++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35788999999999999999999999999996
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.90 E-value=0.14 Score=58.98 Aligned_cols=131 Identities=13% Similarity=0.178 Sum_probs=74.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR 188 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l 188 (768)
....+.++|+|++++. .+||.-.||.....+.... | .-....|.+ .++ +|.-...++|.|+.--+.+..+.+
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--G---~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--G---SGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--E---E-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--C---ceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceEE
Confidence 3678999999999988 5677888888544443222 2 234578888 444 666666788999632222222334
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 189 ~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.....+..+-. |.+|...+++.|.+||+.+++... .+ .. ..|..|.|+++|.+++..+.
T Consensus 106 ~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~---~i-~v-~~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 106 KLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIR---RI-DV-SAVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp --SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEE---EE-SS--E-EEEEE-TTSSEEEEE-S
T ss_pred cCCcccceEEc---CcEEEEECCCCEEEEEhhHcceee---EE-ec-CCCcEEEEECCCCEEEEEeC
Confidence 43334444432 888888888889999999887644 22 22 24899999999998887765
No 346
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.76 E-value=0.38 Score=56.20 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=95.7
Q ss_pred CCCCCCCeEEEEECCC----CCEEEEEeCCCeEEEEeCC-----CCeEEEEEecCCC---C--cEEEEEccCCCCEEEEE
Q 004203 103 LSPPPRSTIAAAFSPD----GKTLASTHGDHTVKIIDCQ-----TGSCLKVLHGHRR---T--PWVVRFHPLNPTIIASG 168 (768)
Q Consensus 103 L~gH~~~VtslafSPD----G~~LaSgS~DgtVrVWDl~-----tg~~l~~l~gH~g---~--V~sVafSP~dg~lLaSg 168 (768)
..|.-+.|.++.|.|- -..|........|.||-+. +++.+.....+-+ + ...+.||| ...+|+.-
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VL 130 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVL 130 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEE
Confidence 4456677999999994 3244555566789999874 2332222221111 1 23468999 66666664
Q ss_pred eCCCeEEEEECCCC--cEEEEecCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCcccc-CCeEeecCCCCeEEEEE
Q 004203 169 SLDHEVRLWNASTA--ECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETS-SPRIVLRTRRSLRAVHF 243 (768)
Q Consensus 169 S~DgtVrLWDl~sg--~~i~~l~h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~-~~~~l~~h~~~V~sVaF 243 (768)
..+..-.+++++.. .....+...+-|.|.+|.+||+.|+++-+.. -++||-..+.... ....++.-...|.++.-
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~A 210 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEA 210 (671)
T ss_pred ecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEE
Confidence 44443346666543 3334467889999999999999999888766 8899865544322 22345556678888887
Q ss_pred ccCCCeEEEEEe
Q 004203 244 HPHAAPLLLTAE 255 (768)
Q Consensus 244 SPDG~~LlaS~s 255 (768)
.-|.+ ++.+.+
T Consensus 211 T~dsq-VAvaTE 221 (671)
T PF15390_consen 211 TVDSQ-VAVATE 221 (671)
T ss_pred eccce-EEEEec
Confidence 76655 555544
No 347
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.04 Score=64.16 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=73.4
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeE-EEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004203 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIA-SIAFHASGELLAVAS-GHKLYIWRYNMREETS 226 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~-svafSPDG~~LatgS-dd~I~IWDl~t~~~~~ 226 (768)
..+.-+.|+| .-+++|.+..+|.|-+..+. .+.+.++. +...++ +++|.|||+.|++|- +|+|++.|+.++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3477799999 99999999999999999887 67777777 555666 999999999999998 5669999999987644
Q ss_pred CCeEeecCCCCeEEEEEcc
Q 004203 227 SPRIVLRTRRSLRAVHFHP 245 (768)
Q Consensus 227 ~~~~l~~h~~~V~sVaFSP 245 (768)
. ....-...|..+.|++
T Consensus 99 ~--~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 S--FLFSVETDISKGIWDR 115 (665)
T ss_pred c--cccccccchheeeccc
Confidence 1 1233456788888874
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.64 E-value=0.17 Score=58.38 Aligned_cols=162 Identities=14% Similarity=0.183 Sum_probs=85.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEE-eCCCCeEEEEEecCCCCcEEEEEc
Q 004203 80 ARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKII-DCQTGSCLKVLHGHRRTPWVVRFH 158 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVW-Dl~tg~~l~~l~gH~g~V~sVafS 158 (768)
.++.++. ..|+.-.++......- ...+.-..++|..+++ +|+-....+|+|+ +++ .+..+.++-. ..+..+ .
T Consensus 43 ngr~v~V-~g~geY~iyt~~~~r~-k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~-~~~~k~i~~~-~~~~~I--f 115 (443)
T PF04053_consen 43 NGRFVLV-CGDGEYEIYTALAWRN-KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK-NEVVKSIKLP-FSVEKI--F 115 (443)
T ss_dssp TSSEEEE-EETTEEEEEETTTTEE-EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE-E-TT-----S-S-EEEE--E
T ss_pred CCCEEEE-EcCCEEEEEEccCCcc-cccCceeEEEEecCcc-EEEEECCCeEEEEEcCc-cccceEEcCC-cccceE--E
Confidence 4444443 4566666666322211 1234456788998554 6666668899996 442 2222233322 123332 2
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC-------ccccCCeEe
Q 004203 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR-------EETSSPRIV 231 (768)
Q Consensus 159 P~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~-------~~~~~~~~l 231 (768)
. |.+|...+.+ .|.+||+.+++.++.+.... |..+.|+++|++++..+++.+++++.+.. +.....+..
T Consensus 116 ~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~ 191 (443)
T PF04053_consen 116 G--GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFEL 191 (443)
T ss_dssp ---SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEE
T ss_pred c--CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEE
Confidence 2 6666666554 89999999999999988665 89999999999999999999888887654 011111222
Q ss_pred ecC-CCCeEEEEEccCCCeEEEEE
Q 004203 232 LRT-RRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 232 ~~h-~~~V~sVaFSPDG~~LlaS~ 254 (768)
... ...|.+..|.-| .++.+.
T Consensus 192 ~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 192 IHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp EEEE-S--SEEEEETT--EEEEE-
T ss_pred EEEecceeEEEEEEcC--EEEEEc
Confidence 222 678899999876 455544
No 349
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.63 E-value=1.1 Score=56.24 Aligned_cols=157 Identities=11% Similarity=0.132 Sum_probs=101.0
Q ss_pred eEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC
Q 004203 92 SLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171 (768)
Q Consensus 92 sIrlWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~D 171 (768)
.+++|-.....-. -...|.++.|.-|+..++.+..+|.|.+-|.++..... ...-...|.+++|+| |++.++..+.+
T Consensus 54 kv~~~~~s~~~~~-gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~-Dee~l~liT~~ 130 (1265)
T KOG1920|consen 54 KVRLVAESFLPED-GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSP-DEELLALITGR 130 (1265)
T ss_pred cccceeecccCcC-CCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecC-CCcEEEEEeCC
Confidence 3555554322222 23689999999999999999999999999988765332 222345699999999 99999999888
Q ss_pred CeEEEEEC----CCCcEE-----------EE-ec-----------------------------CCCCeEEEEEcCCCCEE
Q 004203 172 HEVRLWNA----STAECI-----------GS-RD-----------------------------FYRPIASIAFHASGELL 206 (768)
Q Consensus 172 gtVrLWDl----~sg~~i-----------~~-l~-----------------------------h~~~V~svafSPDG~~L 206 (768)
++|.+-+- -..+.+ .. ++ ..+.-+++.|--||+++
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYF 210 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEE
Confidence 88766432 111110 00 00 11122459999999999
Q ss_pred EEEE-----C-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 207 AVAS-----G-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 207 atgS-----d-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
++.. + .+|++||-. +.... .-......=.+++|-|.|..+++...
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns---~se~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNS---TSEPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhc---ccCcccccccceeecCCCCeEeeeee
Confidence 9854 3 349999976 32211 11111233457899999996665443
No 350
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.46 E-value=0.62 Score=50.52 Aligned_cols=150 Identities=13% Similarity=0.208 Sum_probs=101.5
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-CCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (768)
++.+-...|.++.|+|+.+.|++..+...-.||=..+|+.+.++.-.. .....+.+.. ++.++++--+++.+.++.+.
T Consensus 80 pi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 80 PILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEc
Confidence 356677779999999999999999888888888777898887764211 2244577877 78888888889999998887
Q ss_pred CCcEEEE-------e---cC-CCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecC-------CCCeEEE
Q 004203 181 TAECIGS-------R---DF-YRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-------RRSLRAV 241 (768)
Q Consensus 181 sg~~i~~-------l---~h-~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h-------~~~V~sV 241 (768)
....... + .+ +.....++|+|....|.++-..+ +.||.+..............+ -..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 6532111 1 12 55788999999999999888665 666655433211100011111 2467888
Q ss_pred EEccCCCeEEE
Q 004203 242 HFHPHAAPLLL 252 (768)
Q Consensus 242 aFSPDG~~Lla 252 (768)
.|++....+++
T Consensus 239 ~~~~~~~~LLV 249 (316)
T COG3204 239 EFNAITNSLLV 249 (316)
T ss_pred eecCCCCcEEE
Confidence 89876554444
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.44 E-value=0.49 Score=49.98 Aligned_cols=130 Identities=14% Similarity=0.149 Sum_probs=82.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCC-CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE----------
Q 004203 118 DGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG---------- 186 (768)
Q Consensus 118 DG~~LaSgS~DgtVrVWDl~t-g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~---------- 186 (768)
.++.|+.|.++| |++++... .+..+..+ ...|..+..-| +-+.++.-+ |+.++++|+..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 578999999999 99999833 33333332 23399999998 666666554 5999999997644333
Q ss_pred -----EecCCCCeEEEE---EcCCCCEEEEEECCeEEEEEcCCCcccc-CCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 187 -----SRDFYRPIASIA---FHASGELLAVASGHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 187 -----~l~h~~~V~sva---fSPDG~~LatgSdd~I~IWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
.+.....+..++ -...+..|+++...+|.+|......... .......-...+.+++|. ++.++.+.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence 122333455444 2234457788778888888886642211 122334456889999998 44455554
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.42 E-value=1.2 Score=47.14 Aligned_cols=141 Identities=12% Similarity=0.056 Sum_probs=93.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC-C--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE------------
Q 004203 79 DARRGLASWVEAESLHHLRPKY-C--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK------------ 143 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t-~--~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~------------ 143 (768)
..+..|+.|.++| +.+++... . ....+...|..+...++-+.|++-++ +.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcC-CccEEEEchhhcccccccccccccccc
Confidence 3567788888887 77777722 1 12234445999999998887776654 999999987644332
Q ss_pred ---EEecCCCCcEEEE-EccCCCCEEEEEeCCCeEEEEECCCC-----cEEEEecCCCCeEEEEEcCCCCEEEEEECCeE
Q 004203 144 ---VLHGHRRTPWVVR-FHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKL 214 (768)
Q Consensus 144 ---~l~gH~g~V~sVa-fSP~dg~lLaSgS~DgtVrLWDl~sg-----~~i~~l~h~~~V~svafSPDG~~LatgSdd~I 214 (768)
.+. ....+...+ -....+...+.....+.|.+|..... +..+.+.....+..++|. ++.|+++..++.
T Consensus 83 ~~~~~~-~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f 159 (275)
T PF00780_consen 83 LPTKLP-ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGF 159 (275)
T ss_pred cccccc-ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCce
Confidence 111 122343333 11223444444444558888887653 455667788999999999 778888988889
Q ss_pred EEEEcCCCcc
Q 004203 215 YIWRYNMREE 224 (768)
Q Consensus 215 ~IWDl~t~~~ 224 (768)
.+.|+.++..
T Consensus 160 ~~idl~~~~~ 169 (275)
T PF00780_consen 160 YLIDLNTGSP 169 (275)
T ss_pred EEEecCCCCc
Confidence 9999997654
No 353
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.42 E-value=0.42 Score=50.93 Aligned_cols=136 Identities=14% Similarity=0.040 Sum_probs=91.0
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc
Q 004203 76 AGRDARRGLASWVEAESLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152 (768)
Q Consensus 76 a~~d~g~~LvSgs~DgsIrlWd~~t~~L~g---H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V 152 (768)
...+.+..++-++-.+.+.--|..++.+.- -...|.+-+.- -|++++.|...|.+++.+.++|+....+..-.. |
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-v 95 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-V 95 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh-h
Confidence 344556777777777777777777664321 11222222222 477899999999999999999987776654322 2
Q ss_pred EE-EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCe-EEEEEcC-CCCEEEEEECCeE
Q 004203 153 WV-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI-ASIAFHA-SGELLAVASGHKL 214 (768)
Q Consensus 153 ~s-VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V-~svafSP-DG~~LatgSdd~I 214 (768)
.+ ....+ ++.++..|+.|++.+..|.++..++...+..+.+ .+-+..| ++.+.++...|.+
T Consensus 96 k~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 96 KVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred ccceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 22 34556 8899999999999999999999998887655433 3345566 5554444445543
No 354
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.37 E-value=0.24 Score=55.58 Aligned_cols=131 Identities=11% Similarity=0.023 Sum_probs=80.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC-CcEEEEEc
Q 004203 82 RGLASWVEAESLHHLRPKYCPLSP--PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR-TPWVVRFH 158 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~~L~g--H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g-~V~sVafS 158 (768)
..++..+.++.+..+|..+++..- .......+. .++..|+.++.++.+..+|.++|+.+.....-.. .......
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v- 333 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL- 333 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-
Confidence 455666677888888877663211 111111122 2567888899999999999999987654432111 1222222
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CCeEE-EEEcCCCCEEEEEE-CCeEEEEEc
Q 004203 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIAS-IAFHASGELLAVAS-GHKLYIWRY 219 (768)
Q Consensus 159 P~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~-~~V~s-vafSPDG~~LatgS-dd~I~IWDl 219 (768)
.+..++.++.||.|+..|..+|+.+...... ..+.+ ..+ .+..|++++ ++.++.++.
T Consensus 334 --~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 --YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred --ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 2456778899999999999999988776532 22221 222 234566666 555877754
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.11 E-value=0.66 Score=49.49 Aligned_cols=151 Identities=14% Similarity=0.130 Sum_probs=86.7
Q ss_pred CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCC-CCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 004203 102 PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-g~V~sVafSP~dg~lLaSgS~DgtVrLWDl 179 (768)
.+.+-...+.+++|+||.+ ++++....+.|..++. +|+.++.+.-.+ +..-.|++.- ++.++++--+++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 4556666799999999755 5566666889999997 478777765433 4577888876 7777777667999999998
Q ss_pred CCCc--E----EEE--ec----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCC--CccccCCeE------eecCCCCe
Q 004203 180 STAE--C----IGS--RD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNM--REETSSPRI------VLRTRRSL 238 (768)
Q Consensus 180 ~sg~--~----i~~--l~----h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t--~~~~~~~~~------l~~h~~~V 238 (768)
.... . ... +. .+..+..++|+|.++.|+++-... ..+|.++. ......... .......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 4321 1 111 22 345689999999988888877554 56666544 111000000 01123568
Q ss_pred EEEEEccCCCeEEEEE
Q 004203 239 RAVHFHPHAAPLLLTA 254 (768)
Q Consensus 239 ~sVaFSPDG~~LlaS~ 254 (768)
.+++++|....+++-+
T Consensus 174 S~l~~~p~t~~lliLS 189 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILS 189 (248)
T ss_dssp -EEEEETTTTEEEEEE
T ss_pred cceEEcCCCCeEEEEE
Confidence 9999999876555544
No 356
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.05 E-value=0.049 Score=65.01 Aligned_cols=133 Identities=16% Similarity=0.240 Sum_probs=91.4
Q ss_pred EEEEECCCCCEEEEEeC----CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203 111 IAAAFSPDGKTLASTHG----DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (768)
Q Consensus 111 tslafSPDG~~LaSgS~----DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~ 186 (768)
+-..|+|...+|++++. .|.|.||- ++|++.+...-. -.+.+++||| ..-.|+.|=.-|.+.+|...+.+.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P-~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP-VHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc-eehhhhccCh-HHHHHhhccccceeEEEecCCceeee
Confidence 34578888888887765 57788885 566654333211 1255799999 77788888889999999988765433
Q ss_pred E-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEeecC--CCC--eEEEEEccCC
Q 004203 187 S-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT--RRS--LRAVHFHPHA 247 (768)
Q Consensus 187 ~-l~h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t~~~~~~~~~l~~h--~~~--V~sVaFSPDG 247 (768)
. ..|..+|..+.|+++|..|+++.. +.+.+|.++.....+ ...+..| +.. ..+...++++
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q-~~~~~~hel~~~ltl~cfRL~~~~ 161 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQ-TSNIMQHELNDQLTLWCFRLSYDR 161 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccc-cchhhhhHhhceeeEEEEecCCCh
Confidence 3 458899999999999999999886 449999887544332 1123333 222 3445556664
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.97 E-value=0.66 Score=55.44 Aligned_cols=129 Identities=9% Similarity=0.019 Sum_probs=76.8
Q ss_pred CeEEEEECCCCCEEEEEeCC------------CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 004203 109 STIAAAFSPDGKTLASTHGD------------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~D------------gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrL 176 (768)
..+.-.|+|||+.|++.... +.+.+.+++.++... ...+.|..+.||| ||..++... ++.|++
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~V 472 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEE
Confidence 47889999999988877532 234444554443322 2345699999999 888887766 467777
Q ss_pred ---EECCCCcEEE----Ee--cCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEeec--CCCCeEEEEE
Q 004203 177 ---WNASTAECIG----SR--DFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR--TRRSLRAVHF 243 (768)
Q Consensus 177 ---WDl~sg~~i~----~l--~h~~~V~svafSPDG~~LatgSdd~--I~IWDl~t~~~~~~~~~l~~--h~~~V~sVaF 243 (768)
-....|+... .+ .....+..+.|..++.+++...+.. ++..+++..... .+.. ....+.+|+=
T Consensus 473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~----~~~~~n~~~~v~~vaa 548 (591)
T PRK13616 473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD----ALPSRNLSAPVVAVAA 548 (591)
T ss_pred EEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc----ccCCCCccCceEEEec
Confidence 4444554111 12 1233468899999999664433333 544455433221 1122 2456777777
Q ss_pred ccC
Q 004203 244 HPH 246 (768)
Q Consensus 244 SPD 246 (768)
+++
T Consensus 549 ~~~ 551 (591)
T PRK13616 549 SPS 551 (591)
T ss_pred CCc
Confidence 763
No 358
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.92 E-value=0.55 Score=52.72 Aligned_cols=139 Identities=7% Similarity=-0.009 Sum_probs=85.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCC---CCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCc---
Q 004203 81 RRGLASWVEAESLHHLRPKYCPLSPP---PRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP--- 152 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~~L~gH---~~~VtslafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V--- 152 (768)
+..++.+..++.+.-+|.+++++.-. ...+. -+| .+..++.+..++.|+.+|.++|+.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~---ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEAL---SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCcee---cCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 45667777889999999988753321 11121 122 34567778889999999999999887775431111
Q ss_pred --EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC--------eEEEEEcC--CCCEEEEEE-CCeEEEEEc
Q 004203 153 --WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP--------IASIAFHA--SGELLAVAS-GHKLYIWRY 219 (768)
Q Consensus 153 --~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~--------V~svafSP--DG~~LatgS-dd~I~IWDl 219 (768)
..... .+..++.+..++.+..+|..+|+.+.......+ ...+.-+| .+..+++++ ++.++.+|.
T Consensus 197 ~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 01111 123566677889999999999987665432111 11111222 234454444 667999999
Q ss_pred CCCccc
Q 004203 220 NMREET 225 (768)
Q Consensus 220 ~t~~~~ 225 (768)
.+++..
T Consensus 274 ~tG~~~ 279 (394)
T PRK11138 274 RSGQIV 279 (394)
T ss_pred CCCCEE
Confidence 888653
No 359
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=1.7 Score=52.78 Aligned_cols=144 Identities=17% Similarity=0.090 Sum_probs=101.5
Q ss_pred cCCCEEEEEeCCCe-----EEEEeCCCC-----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe-
Q 004203 79 DARRGLASWVEAES-----LHHLRPKYC-----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID- 135 (768)
Q Consensus 79 d~g~~LvSgs~Dgs-----IrlWd~~t~-----------------~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWD- 135 (768)
++...|++.++|+. +++|+++.- +......++.+++.+.|-+.+|.|=.+|.|..+.
T Consensus 75 ~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 75 NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG 154 (933)
T ss_pred cCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence 34457777776664 899998632 0112356789999999999999999999999994
Q ss_pred -C--CCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEec-CCCCeEEEEEcCCCCEEEEEE
Q 004203 136 -C--QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSRD-FYRPIASIAFHASGELLAVAS 210 (768)
Q Consensus 136 -l--~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-i~~l~-h~~~V~svafSPDG~~LatgS 210 (768)
+ +.|........-+.+|+.+.+.- ++..++.+..-..|.+|.+....+ ...+. +....+|..|++....+++++
T Consensus 155 Di~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 155 DILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred cchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec
Confidence 2 11222233333457899999988 676645555566799999985442 33344 455888888888777788888
Q ss_pred CCeEEEEEcCCCc
Q 004203 211 GHKLYIWRYNMRE 223 (768)
Q Consensus 211 dd~I~IWDl~t~~ 223 (768)
+..+.+||.+..+
T Consensus 234 ~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 234 SEFLYFYDSDGRG 246 (933)
T ss_pred CceEEEEcCCCcc
Confidence 8889999987554
No 360
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.6 Score=57.96 Aligned_cols=148 Identities=12% Similarity=0.076 Sum_probs=95.3
Q ss_pred CCeEEEEECCCCCEEEE--EeCCCeEEEEeCCCCeE-----EEEEecC------CCCcEEEEEccCCCCEEEEEeCCCeE
Q 004203 108 RSTIAAAFSPDGKTLAS--THGDHTVKIIDCQTGSC-----LKVLHGH------RRTPWVVRFHPLNPTIIASGSLDHEV 174 (768)
Q Consensus 108 ~~VtslafSPDG~~LaS--gS~DgtVrVWDl~tg~~-----l~~l~gH------~g~V~sVafSP~dg~lLaSgS~DgtV 174 (768)
-.|..+..++|+...++ .+++-.|+.||+++-.. ..-|..| ..-..++.|.|.-..-.+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35677777778765543 44556899999976422 1222222 23355788998545566777889989
Q ss_pred EEEECCCCc-EEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203 175 RLWNASTAE-CIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (768)
Q Consensus 175 rLWDl~sg~-~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla 252 (768)
++..+.--. ....+......++++|+|.|+.++.|-.++ +.-|..........+..-......|.+|.|-....++++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 888776433 233456777899999999999999998554 666654333211111111112578999999988887776
Q ss_pred EEe
Q 004203 253 TAE 255 (768)
Q Consensus 253 S~s 255 (768)
-+.
T Consensus 261 y~n 263 (1405)
T KOG3630|consen 261 YGN 263 (1405)
T ss_pred ecc
Confidence 554
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.35 E-value=5 Score=44.18 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=92.3
Q ss_pred CCeEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC-CCeEE
Q 004203 108 RSTIAAAFSPDGKTLASTHG-----------DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVR 175 (768)
Q Consensus 108 ~~VtslafSPDG~~LaSgS~-----------DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~-DgtVr 175 (768)
..-+++...|+|.+-++... -|.|+.+|. .+..++.+.++-..-+.++||| |++.++.+.. .+.|+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~ 188 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIH 188 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEE
Confidence 34678889999987775443 244666665 5677777777666678899999 7766666554 47888
Q ss_pred EEECCC--CcE----EEE-e-cCCCCeEEEEEcCCCCEEEEEECC--eEEEEEcCCCccccCCeEeecCCCCeEEEEEc-
Q 004203 176 LWNAST--AEC----IGS-R-DFYRPIASIAFHASGELLAVASGH--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFH- 244 (768)
Q Consensus 176 LWDl~s--g~~----i~~-l-~h~~~V~svafSPDG~~LatgSdd--~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFS- 244 (768)
-|++.. +.. ... + ...+..-.++...+|.+.+.+-.+ +|.+|+.+ ++... .+.-....+.+++|-
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~---~i~lP~~~~t~~~FgG 264 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG---EIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE---EEECCCCCCccceEeC
Confidence 888762 211 111 1 134555667888888877544433 69999988 55433 333334677788875
Q ss_pred cCCCeEEEEEeeC
Q 004203 245 PHAAPLLLTAEVN 257 (768)
Q Consensus 245 PDG~~LlaS~svw 257 (768)
|+.+.|.+++...
T Consensus 265 ~~~~~L~iTs~~~ 277 (307)
T COG3386 265 PDLNTLYITSARS 277 (307)
T ss_pred CCcCEEEEEecCC
Confidence 4567676666544
No 362
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.16 E-value=1.3 Score=49.53 Aligned_cols=136 Identities=12% Similarity=0.082 Sum_probs=74.7
Q ss_pred CeEEEEECCCCCEEEEEe-----------CCC-eEEEEeCCC--Ce--EEEEEecCCCCcEEEEEccCCCCEEEEEeCCC
Q 004203 109 STIAAAFSPDGKTLASTH-----------GDH-TVKIIDCQT--GS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS-----------~Dg-tVrVWDl~t--g~--~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg 172 (768)
....++|.++|+++++-. ..+ .|.+++-.+ |+ ....|.........+++.+ ++ +++ ++.+.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe
Confidence 456789999998877653 223 677776432 33 2344443344567899988 66 444 44444
Q ss_pred eEEEEECCCC-----cE--E-EEecC-----CCCeEEEEEcCCCCEEEEEEC--------------------CeEEEEEc
Q 004203 173 EVRLWNASTA-----EC--I-GSRDF-----YRPIASIAFHASGELLAVASG--------------------HKLYIWRY 219 (768)
Q Consensus 173 tVrLWDl~sg-----~~--i-~~l~h-----~~~V~svafSPDG~~LatgSd--------------------d~I~IWDl 219 (768)
.+++.|.... +. + ..+.. ......++|.|||.+.++-++ +.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3344455321 21 1 11222 234678999999986554331 12444444
Q ss_pred CCCccccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203 220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (768)
Q Consensus 220 ~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Ll 251 (768)
+..+. ..+...-.....++|+|+|+.++
T Consensus 172 dg~~~----e~~a~G~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 172 DGGKL----RVVAHGFQNPYGHSVDSWGDVFF 199 (367)
T ss_pred CCCeE----EEEecCcCCCccceECCCCCEEE
Confidence 43332 12222334566788888887543
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.03 E-value=7.4 Score=42.37 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=103.4
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECC-CCCEEEEEeCCCe-EEEEeCCCCeEEEEEecCCCCcE-
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSP-DGKTLASTHGDHT-VKIIDCQTGSCLKVLHGHRRTPW- 153 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~VtslafSP-DG~~LaSgS~Dgt-VrVWDl~tg~~l~~l~gH~g~V~- 153 (768)
..++...++..+++|++..--. -......++|+| ..+-++.+-.-|+ ..++|.++.+...++...++.-.
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~~~-------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfy 116 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFATA-------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFY 116 (366)
T ss_pred ccCCceeEEEEccCCceeeeee-------cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceee
Confidence 3456667778888887643222 122345677888 4455666655444 67889888776655543322211
Q ss_pred -EEEEccCCCCEEEEEeCC-----CeEEEEECCCC-cEEEEec-CCCCeEEEEEcCCCCEEEEEECCe------------
Q 004203 154 -VVRFHPLNPTIIASGSLD-----HEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGHK------------ 213 (768)
Q Consensus 154 -sVafSP~dg~lLaSgS~D-----gtVrLWDl~sg-~~i~~l~-h~~~V~svafSPDG~~LatgSdd~------------ 213 (768)
.-.||| ||.+|+..-.| |.|=|||.+.+ +.+..+. |.-.-..+.|.+||+.|+.+.++-
T Consensus 117 GHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN 195 (366)
T COG3490 117 GHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN 195 (366)
T ss_pred cccccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccc
Confidence 247899 99988876554 58999999843 2222333 444567799999999988775421
Q ss_pred -------EEEEEcCCCccccCCeEee--cCCCCeEEEEEccCCCeEEEEEe
Q 004203 214 -------LYIWRYNMREETSSPRIVL--RTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 214 -------I~IWDl~t~~~~~~~~~l~--~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+.+.|..+++.+.+ ..+. .+.-.|+.+...+||. +.+++.
T Consensus 196 ldsMePSlvlld~atG~liek-h~Lp~~l~~lSiRHld~g~dgt-vwfgcQ 244 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEK-HTLPASLRQLSIRHLDIGRDGT-VWFGCQ 244 (366)
T ss_pred hhhcCccEEEEeccccchhhh-ccCchhhhhcceeeeeeCCCCc-EEEEEE
Confidence 33444444443331 1122 2456789999999998 666655
No 364
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.69 E-value=1.1 Score=53.68 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=75.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE--EEecCCCCcEEEEEc--cCCCCEEEEEeCCCeEEEEECC---
Q 004203 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLHGHRRTPWVVRFH--PLNPTIIASGSLDHEVRLWNAS--- 180 (768)
Q Consensus 108 ~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--~l~gH~g~V~sVafS--P~dg~lLaSgS~DgtVrLWDl~--- 180 (768)
....-+.-|.-++.-++-+....+.|||.+.+.... .| ...+.|.++.|. | +++.+++.+..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEccchh
Confidence 344555555555555555556789999999887442 33 346779999985 5 78888888888889888432
Q ss_pred --C----CcEEEEe---cC-CCCeEEEEEcCCCCEEEEEECCeEEEEEcCC
Q 004203 181 --T----AECIGSR---DF-YRPIASIAFHASGELLAVASGHKLYIWRYNM 221 (768)
Q Consensus 181 --s----g~~i~~l---~h-~~~V~svafSPDG~~LatgSdd~I~IWDl~t 221 (768)
. ...++.+ .+ ..+|.+..|.++|. |++++++.+.|+|-.-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFDKWL 157 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEECCCc
Confidence 1 1233333 23 36899999999985 5667788899887543
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=0.59 Score=53.99 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=91.4
Q ss_pred CEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCC--EE-----EEEeCCCeEEEEeCCCC-e-EEEEEecC
Q 004203 82 RGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGK--TL-----ASTHGDHTVKIIDCQTG-S-CLKVLHGH 148 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~~L----~gH~~~VtslafSPDG~--~L-----aSgS~DgtVrVWDl~tg-~-~l~~l~gH 148 (768)
-.+.++.+...++..|++++++ +-|.. |+-+.+.||.+ .| +.|-.|..|..||.+-. + .+..-++|
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 3444566666777777777743 23444 88888888654 22 35666889999997632 2 23333333
Q ss_pred C----CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-e-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCC
Q 004203 149 R----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHKLYIWRYNM 221 (768)
Q Consensus 149 ~----g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t 221 (768)
. ....|.+-. ...+|+.|+.+|.|||||- .+..-++ + +...+|.-+..+.||++|+..++..+.+.|+.-
T Consensus 426 qy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 426 QYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred ccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence 2 224443332 5668999999999999997 4444333 2 466799999999999999999988888887654
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.57 E-value=0.6 Score=53.93 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=91.6
Q ss_pred CCCCCEEE-EEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCC-------EEEEEeCCCeEEEEECCCCcE--E
Q 004203 116 SPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-------IIASGSLDHEVRLWNASTAEC--I 185 (768)
Q Consensus 116 SPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~-------lLaSgS~DgtVrLWDl~sg~~--i 185 (768)
..+.++|+ ++..-..++-.|++.|+.+...+-+.. |.-+.+.| +.+ .-+.|-.|+.|.-||.+-... +
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCccee
Confidence 33445544 445566789999999999999987776 77677777 432 223466788899999984222 1
Q ss_pred EE-----ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 186 GS-----RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 186 ~~-----l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.. +.......|.+-..+| +|++|+ +|.|++||--.... ...+.+-...|..|..+.||++|++++.
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~A---KTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRA---KTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhh---hhcccccCCceeeEEeeccCcEEEEecc
Confidence 11 1123355666666666 566666 66699999732222 2356667889999999999999999987
No 367
>PRK10115 protease 2; Provisional
Probab=93.56 E-value=2.4 Score=51.63 Aligned_cols=110 Identities=10% Similarity=0.047 Sum_probs=69.1
Q ss_pred CCeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCeEE-EEEecCCCCcEEEEEccCCCCEEEEEeCC------CeEE
Q 004203 108 RSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCL-KVLHGHRRTPWVVRFHPLNPTIIASGSLD------HEVR 175 (768)
Q Consensus 108 ~~VtslafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l-~~l~gH~g~V~sVafSP~dg~lLaSgS~D------gtVr 175 (768)
-.+..+.|||||++|+.+.. ..+|++.|+.+|+.+ ..+.+ .. ..++|.+ |++.|+....+ ..|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEee-CCCEEEEEEecCCCCCCCEEE
Confidence 45778999999999886533 457999999988643 22222 11 4589999 66655554332 3788
Q ss_pred EEECCCC--cEEEEecC-CCCeE-EEEEcCCCCEEEEEEC----CeEEEEEcCC
Q 004203 176 LWNASTA--ECIGSRDF-YRPIA-SIAFHASGELLAVASG----HKLYIWRYNM 221 (768)
Q Consensus 176 LWDl~sg--~~i~~l~h-~~~V~-svafSPDG~~LatgSd----d~I~IWDl~t 221 (768)
++++.++ +....+.. ..... .+..+.|+++++..+. ..+.+|+...
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 9999988 33333432 22233 3333448887665552 2388888644
No 368
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.42 E-value=0.029 Score=65.31 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=88.3
Q ss_pred CCCeEEEEeCCCC--------CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEcc
Q 004203 89 EAESLHHLRPKYC--------PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159 (768)
Q Consensus 89 ~DgsIrlWd~~t~--------~L~g-H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP 159 (768)
.|..+.+||..+. .|.+ -.....+++|-.|.+++.+|.....++++|++... .....-.+..+..+...|
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp 205 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDP 205 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecC
Confidence 4667999999865 2333 44456789999999999999999999999987321 111111233455677778
Q ss_pred CCCCEEEEEeCCCeEEEEEC-CC-CcEEEEecC-----CCCeEEEEEcCCCC-EEEEEECC--eEEEEEcCC
Q 004203 160 LNPTIIASGSLDHEVRLWNA-ST-AECIGSRDF-----YRPIASIAFHASGE-LLAVASGH--KLYIWRYNM 221 (768)
Q Consensus 160 ~dg~lLaSgS~DgtVrLWDl-~s-g~~i~~l~h-----~~~V~svafSPDG~-~LatgSdd--~I~IWDl~t 221 (768)
..++++++-. |+.|-+||. ++ ..++..+.+ ...+..++|+|... .+++.+.+ .|+++|+..
T Consensus 206 ~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 206 FSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7778888766 899999993 32 222222222 23589999999654 55556644 399999864
No 369
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.39 E-value=2.1 Score=45.82 Aligned_cols=128 Identities=9% Similarity=-0.019 Sum_probs=86.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeE-EE
Q 004203 119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SI 197 (768)
Q Consensus 119 G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~-sv 197 (768)
..+++.|+..+.++-.|..+|+....-. -+..+.+-+.- -+++++.|...+.+++.+.++|+....+...+.|. ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 4577888999999999999998764432 22334432222 36789999999999999999998777765444443 24
Q ss_pred EEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEeecCCCCeEEEEEcc-CCCeEEE
Q 004203 198 AFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP-HAAPLLL 252 (768)
Q Consensus 198 afSPDG~~LatgSdd-~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSP-DG~~Lla 252 (768)
...+++..+..++.| ..+..|.++...+. +..-......+-+..| ++..+++
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVy---kskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVY---KSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEE---ecccCCceeccceecCCCceEEEE
Confidence 457889999999955 59999999887644 2111222233444555 5554443
No 370
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.27 E-value=6.3 Score=43.34 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC-CC
Q 004203 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA-ST 181 (768)
Q Consensus 103 L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl-~s 181 (768)
..+-.+.+..+.-++||+++++++.-....-||--...-...-+.....|..+.|.| ++.+.+. .+.+.|+.=|. ..
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~-~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWML-ARGGQIQFSDDPDD 217 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEE-ETTTEEEEEE-TTE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEE-eCCcEEEEccCCCC
Confidence 345567899999999999998887766667787532212222233457899999999 7776564 48888988872 22
Q ss_pred CcEEEE--ec--CC-CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 182 AECIGS--RD--FY-RPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 182 g~~i~~--l~--h~-~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
.+.... .. .. ..+..++|.+++...++++.+.+. ...+.++.-........-...++.|.|.++.+-++.+
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 222211 11 22 247899999999988887777543 3444444322011111235578888987776655543
No 371
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.25 E-value=10 Score=40.55 Aligned_cols=179 Identities=11% Similarity=0.095 Sum_probs=91.7
Q ss_pred eeecCCCCeEEEEEecCCCEEEEEeCCCeE-EEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--
Q 004203 64 RKCSGSFSQIFEAGRDARRGLASWVEAESL-HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-- 140 (768)
Q Consensus 64 ~~~s~s~~~l~~a~~d~g~~LvSgs~DgsI-rlWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-- 140 (768)
..++++... +++..+....|+..+.+|.| +.+.+ .+ .+-..+|++.-++.++++--.++.+.++++....
T Consensus 27 LTy~pd~~t-LfaV~d~~~~i~els~~G~vlr~i~l-----~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 27 LTYNPDTGT-LFAVQDEPGEIYELSLDGKVLRRIPL-----DG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp EEEETTTTE-EEEEETTTTEEEEEETT--EEEEEE------SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cEEcCCCCe-EEEEECCCCEEEEEcCCCCEEEEEeC-----CC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 345555444 44455666777777776553 33333 22 3567899998888777766568999999883321
Q ss_pred ----EEEEEe-----cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC---CcEEEE-----ec----CCCCeEEEEE
Q 004203 141 ----CLKVLH-----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---AECIGS-----RD----FYRPIASIAF 199 (768)
Q Consensus 141 ----~l~~l~-----gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s---g~~i~~-----l~----h~~~V~svaf 199 (768)
....+. .++..+-.++|.| .++.|+.+....-..||.++. ...... +. .-..+..+++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 111221 2345588999999 555555566665555665543 222111 11 3346789999
Q ss_pred cCCCCEEEEEECC--eEEEEEcCCCccccCCeEeec-------CCCCeEEEEEccCCCeEEE
Q 004203 200 HASGELLAVASGH--KLYIWRYNMREETSSPRIVLR-------TRRSLRAVHFHPHAAPLLL 252 (768)
Q Consensus 200 SPDG~~LatgSdd--~I~IWDl~t~~~~~~~~~l~~-------h~~~V~sVaFSPDG~~Lla 252 (768)
+|....|+.-|+. .|..+|. +++... ...+.. .-...-.|+|.++|+.+++
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~-~G~~~~-~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDR-QGRVVS-SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-T-T--EEE-EEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred cCCCCeEEEEECCCCeEEEECC-CCCEEE-EEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 9987766666643 3888883 443222 112221 1135789999999985443
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.12 E-value=1.7 Score=47.76 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=72.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCCC--C----eE-EEEEecCCCCcEEEEEccCCCCEEEEEeCCC-eEE
Q 004203 105 PPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQT--G----SC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDH-EVR 175 (768)
Q Consensus 105 gH~~~VtslafSPDG~~LaSgS~-DgtVrVWDl~t--g----~~-l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg-tVr 175 (768)
.|-..-++++||||++.|+.+-. .+.|..|++.. + +. ...+....+..-.++... ++.+.+++-.+| .|.
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~ 238 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVV 238 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEE
Confidence 34445679999999999888766 48899998752 2 11 122223445666677777 788776555554 899
Q ss_pred EEECCCCcEEEEecCC-CCeEEEEEc-CCCCEEEEEE
Q 004203 176 LWNASTAECIGSRDFY-RPIASIAFH-ASGELLAVAS 210 (768)
Q Consensus 176 LWDl~sg~~i~~l~h~-~~V~svafS-PDG~~LatgS 210 (768)
.|+.. |+.+..+... ..+++++|- |+.+.|++.+
T Consensus 239 ~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 99998 8888887765 778888884 4566665555
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.93 E-value=1.5 Score=53.88 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=84.8
Q ss_pred CCCeEEEEeCCCCCC----CCCCCC-eEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCe--EEE-EEe--cCCCCcE
Q 004203 89 EAESLHHLRPKYCPL----SPPPRS-TIAAAFSP-----DGKTLASTHGDHTVKIIDCQTGS--CLK-VLH--GHRRTPW 153 (768)
Q Consensus 89 ~DgsIrlWd~~t~~L----~gH~~~-VtslafSP-----DG~~LaSgS~DgtVrVWDl~tg~--~l~-~l~--gH~g~V~ 153 (768)
....|...|++++++ ..|... |..++-.. +....+.|-.+..+..||.+-.. ++. ..+ ..+....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 455677777777642 234332 55543321 12345677888899999987532 221 111 1233466
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-e-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004203 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHKLYIWRYN 220 (768)
Q Consensus 154 sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~ 220 (768)
|++-.. ..+||.|+.+|.|||||- .|+.-++ + +...+|..++.+.||++|+..++.-|.+++..
T Consensus 582 ~~aTt~--~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 582 CFATTE--DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred EEEecC--CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 665544 567999999999999994 4433222 3 35689999999999999999998888888863
No 374
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.82 E-value=6.7 Score=42.28 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=67.3
Q ss_pred eEEEEECCCCCEEEEEeCCC--eEEEEeCCCCeEEEEEecCCC-CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 004203 110 TIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRR-TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186 (768)
Q Consensus 110 VtslafSPDG~~LaSgS~Dg--tVrVWDl~tg~~l~~l~gH~g-~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~ 186 (768)
.-++.|..||.++-+.+.-| .|+.+|+++|+......-... ---.++.. ++++..-.=.++...+||..+-+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 56888877888888877755 799999999987655442221 11123333 24444445567888999999888888
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCc
Q 004203 187 SRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMRE 223 (768)
Q Consensus 187 ~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~ 223 (768)
.+...+.=..++ .||+.|+.+. .++|+++|..+-+
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcccc
Confidence 876665555555 4555555443 4558888876543
No 375
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.64 E-value=2.5 Score=46.09 Aligned_cols=130 Identities=8% Similarity=0.068 Sum_probs=75.2
Q ss_pred CCEEEEEeC----------CCeEEEEeCCCC----eEEEEE--ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 004203 119 GKTLASTHG----------DHTVKIIDCQTG----SCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA 182 (768)
Q Consensus 119 G~~LaSgS~----------DgtVrVWDl~tg----~~l~~l--~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg 182 (768)
..+|+.|.. .|.|.++++... ..++.+ ....++|++++--. +. ++.+. .+.|++|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCc
Confidence 467776654 288999999884 222222 23467888887653 44 44333 478999999988
Q ss_pred c-EEEEec--CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 183 E-CIGSRD--FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 183 ~-~i~~l~--h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
+ ....-. ....+.++... +.+|++|. .+++.++.++................++.++.|-+|++.++++-
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence 7 544433 33455555554 56888887 45577775554222111112222356688999987776555443
No 376
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.37 E-value=1.9 Score=50.68 Aligned_cols=140 Identities=12% Similarity=0.224 Sum_probs=85.7
Q ss_pred CCCCeEEEEECCCCCEEEEEe---CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccC---CCCEEEEEeCCCeEEEEEC
Q 004203 106 PPRSTIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL---NPTIIASGSLDHEVRLWNA 179 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS---~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~---dg~lLaSgS~DgtVrLWDl 179 (768)
--.+|.+++|. ||+.++-.. ..|.++.=| .+.+..| ..|..+.|.|- +..-++.....+.|.+|.+
T Consensus 18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 34578999998 787765332 133333322 1233333 34888999983 1235666677789999998
Q ss_pred CC-----CcEEEE--ecCCC--Ce--EEEEEcCCCCEEEEEECCeE-EEEEcCCCccccCCeEeecCCCCeEEEEEccCC
Q 004203 180 ST-----AECIGS--RDFYR--PI--ASIAFHASGELLAVASGHKL-YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA 247 (768)
Q Consensus 180 ~s-----g~~i~~--l~h~~--~V--~svafSPDG~~LatgSdd~I-~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG 247 (768)
.- ++.+.. -.... ++ ..+.|||....|++-....+ .+++++.... + ...-....+-|.+.+|.+||
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-r-VkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-R-VKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-e-EEEeccCCceEEEEEecCcC
Confidence 62 222211 11211 22 35789999999998886654 4555544332 1 11234567889999999999
Q ss_pred CeEEEEEe
Q 004203 248 APLLLTAE 255 (768)
Q Consensus 248 ~~LlaS~s 255 (768)
+.|+++.+
T Consensus 168 ~RLVVAvG 175 (671)
T PF15390_consen 168 QRLVVAVG 175 (671)
T ss_pred CEEEEEeC
Confidence 98887654
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.83 E-value=0.73 Score=56.97 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=68.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCC--CC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEE
Q 004203 81 RRGLASWVEAESLHHLRPKYC--PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV 155 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~--~L---~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sV 155 (768)
...++.++..|.|-..|.... .+ ..-.++|++++|+.||++++.|-.+|.|.+||+.+++..+.+..|+.+...+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 344666666666665555432 11 1235689999999999999999999999999999999999998887765554
Q ss_pred E---EccCCCCEEEEEeCCCeEEEEEC
Q 004203 156 R---FHPLNPTIIASGSLDHEVRLWNA 179 (768)
Q Consensus 156 a---fSP~dg~lLaSgS~DgtVrLWDl 179 (768)
- +.. ++..++++..-|. +|.+
T Consensus 179 i~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 3 333 3446777776665 4543
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.40 E-value=0.57 Score=37.17 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=30.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE
Q 004203 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC 141 (768)
Q Consensus 107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~ 141 (768)
...|..++|+|...+||.+..||.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 446999999999999999999999999998 5554
No 379
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.35 E-value=1 Score=47.24 Aligned_cols=101 Identities=11% Similarity=0.054 Sum_probs=64.3
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEE-EECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-CC
Q 004203 79 DARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAA-AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RT 151 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~-----~L~gH~~~Vtsl-afSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-g~ 151 (768)
.....++.|..++.|.+|+.... .+..-...|.+. .--.++.+..+++.|+.|+.|+++-++.+.....|+ ..
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 45678889999999999988621 111222233332 223366688899999999999999888887777777 33
Q ss_pred cEEEEEccCCCCEEEEE--eCCCeEEEEECC
Q 004203 152 PWVVRFHPLNPTIIASG--SLDHEVRLWNAS 180 (768)
Q Consensus 152 V~sVafSP~dg~lLaSg--S~DgtVrLWDl~ 180 (768)
+.....+. .++.+++. |.|..++.|++.
T Consensus 148 ~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEec-CCceEEeeccccchhhhhcchh
Confidence 33333333 34444444 555555556554
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.25 E-value=4.5 Score=38.06 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=64.9
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCC-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEE
Q 004203 79 DARRGLASWVEAESLHHLRPKYCPL-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (768)
Q Consensus 79 d~g~~LvSgs~DgsIrlWd~~t~~L-~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVaf 157 (768)
++...|+.+++|..|++|+-+.... ..-...|+++.-... ..|+.+-.+|+|-+|+- .+.+..++.. ..+.++.+
T Consensus 13 dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK-~~~~~~~~ 88 (111)
T PF14783_consen 13 DGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSK-NQVTSMAF 88 (111)
T ss_pred CCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccC-CCeEEEEE
Confidence 4568999999999999999875421 123456777776654 67899999999999985 3445555543 33667666
Q ss_pred ccCCC---CEEEEEeCCCeEE
Q 004203 158 HPLNP---TIIASGSLDHEVR 175 (768)
Q Consensus 158 SP~dg---~lLaSgS~DgtVr 175 (768)
...++ ..|++|-.+|.|-
T Consensus 89 ~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 89 YDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EcCCCCCceEEEEEecCCeEE
Confidence 54232 3688888888663
No 381
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.17 E-value=9.7 Score=42.00 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=90.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCe------EEEEeCCC--C--eEE-----EEEecCCC--------CcEEEEEccCCC
Q 004203 106 PPRSTIAAAFSPDGKTLASTHGDHT------VKIIDCQT--G--SCL-----KVLHGHRR--------TPWVVRFHPLNP 162 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS~Dgt------VrVWDl~t--g--~~l-----~~l~gH~g--------~V~sVafSP~dg 162 (768)
.-+.+.++.+.+++..++..++++. ++.+++.. + ..+ ..++...+ ..-.|++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 3456889999976777777888887 66666543 1 111 12222222 233688855 88
Q ss_pred CEEEEEeCC------CeEEEEECCCCcEEEEe----------------cCCCCeEEEEEcCCCCEEEEEEC------C--
Q 004203 163 TIIASGSLD------HEVRLWNASTAECIGSR----------------DFYRPIASIAFHASGELLAVASG------H-- 212 (768)
Q Consensus 163 ~lLaSgS~D------gtVrLWDl~sg~~i~~l----------------~h~~~V~svafSPDG~~LatgSd------d-- 212 (768)
.++++.-.+ ..|+.+|.. |+.+..+ ..+.....++++|||+.|++... +
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888888778 889999876 5554332 23456889999999997666541 1
Q ss_pred e-------EEEEEcCCCc---cccCCeEeec------CCCCeEEEEEccCCCeEEEE
Q 004203 213 K-------LYIWRYNMRE---ETSSPRIVLR------TRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 213 ~-------I~IWDl~t~~---~~~~~~~l~~------h~~~V~sVaFSPDG~~LlaS 253 (768)
. ++++.++... .......... ....|..+.+-++++.++.-
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 1 4555554332 1111111111 35678999999999966654
No 382
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.93 E-value=2.6 Score=44.86 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=61.8
Q ss_pred CcEEEEEccCCCCEEEEEe---CCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEE-cCCCccc
Q 004203 151 TPWVVRFHPLNPTIIASGS---LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWR-YNMREET 225 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS---~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~-I~IWD-l~t~~~~ 225 (768)
.+...++++ +++.++... ....|+++... ...........+..-.|++++...++..+.. .+++. ...++..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 578899999 777666655 22355555543 3333332444788889999988777666443 55553 2333321
Q ss_pred cCCeEeecC--CCCeEEEEEccCCCeEEEEEe
Q 004203 226 SSPRIVLRT--RRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 226 ~~~~~l~~h--~~~V~sVaFSPDG~~LlaS~s 255 (768)
. ..+... ...|..+.+||||..++....
T Consensus 102 ~--~~v~~~~~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 102 P--VEVDWPGLRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred e--EEecccccCCceEEEEECCCCcEEEEEEe
Confidence 1 122211 228999999999999887663
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.92 E-value=29 Score=40.11 Aligned_cols=175 Identities=14% Similarity=0.150 Sum_probs=83.6
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCCCCC--------C---CC----CCeEEEEECCCCCEEEEEeC------CCeEEEEeCC
Q 004203 80 ARRGLASWV-EAESLHHLRPKYCPLS--------P---PP----RSTIAAAFSPDGKTLASTHG------DHTVKIIDCQ 137 (768)
Q Consensus 80 ~g~~LvSgs-~DgsIrlWd~~t~~L~--------g---H~----~~VtslafSPDG~~LaSgS~------DgtVrVWDl~ 137 (768)
.+++|+..+ ....|.+.|..+..-. . +. ..-..+-.-|+|+.++|+-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 455555554 7778999998754211 0 00 11233444578999888643 3568889988
Q ss_pred CCeEEEEEecCC---CCcEEEEEccCCCCEEEEEeC--------------------CCeEEEEECCCCcEEEEecCCC--
Q 004203 138 TGSCLKVLHGHR---RTPWVVRFHPLNPTIIASGSL--------------------DHEVRLWNASTAECIGSRDFYR-- 192 (768)
Q Consensus 138 tg~~l~~l~gH~---g~V~sVafSP~dg~lLaSgS~--------------------DgtVrLWDl~sg~~i~~l~h~~-- 192 (768)
+.+......... .--+.+-|.| ..+.++|... -.++.+||+.+.+.++++....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 888777765433 2345678889 8888888652 2489999999999999976542
Q ss_pred -CeEEEEE--cCCCCEEEEEE--CCeEEEEEc-CCCccccCCe-Eee-----c------------CCCCeEEEEEccCCC
Q 004203 193 -PIASIAF--HASGELLAVAS--GHKLYIWRY-NMREETSSPR-IVL-----R------------TRRSLRAVHFHPHAA 248 (768)
Q Consensus 193 -~V~svaf--SPDG~~LatgS--dd~I~IWDl-~t~~~~~~~~-~l~-----~------------h~~~V~sVaFSPDG~ 248 (768)
....+.| .|+..+=++++ ..+|..|-- +.++-..+.. .+. + ...-|+.|..|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 3345555 45566555555 444554433 3332211000 000 0 023479999999999
Q ss_pred eEEEEEe
Q 004203 249 PLLLTAE 255 (768)
Q Consensus 249 ~LlaS~s 255 (768)
+|.++.-
T Consensus 325 fLYvs~W 331 (461)
T PF05694_consen 325 FLYVSNW 331 (461)
T ss_dssp EEEEEET
T ss_pred EEEEEcc
Confidence 8888764
No 384
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.89 E-value=29 Score=39.65 Aligned_cols=169 Identities=13% Similarity=0.121 Sum_probs=86.1
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCC---C-------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-
Q 004203 72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP---L-------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS- 140 (768)
Q Consensus 72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~---L-------~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~- 140 (768)
.++.........|+...+||.++++|..... + .-....|....+..+|-.+.+ .++.+++.+-....
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~ 159 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPV 159 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccc
Confidence 3444444567888888999999999985221 0 111122223344445533333 34445444322211
Q ss_pred EEEEEe---cCCC------CcEE-EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004203 141 CLKVLH---GHRR------TPWV-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS 210 (768)
Q Consensus 141 ~l~~l~---gH~g------~V~s-VafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS 210 (768)
..+.+. +... .... ..++. +....+....++.+.+.+-...+. +...+++..++.||+|++||.-.
T Consensus 160 ~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t 235 (410)
T PF04841_consen 160 KLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFT 235 (410)
T ss_pred hhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEE
Confidence 111111 1000 0000 12333 333344444444555333322111 33456899999999999999888
Q ss_pred C-CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCC
Q 004203 211 G-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA 248 (768)
Q Consensus 211 d-d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~ 248 (768)
+ +.+.+...+-.+... ..-.........+.|.-+..
T Consensus 236 ~~g~l~v~ssDf~~~~~--e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 236 DSGNLWVVSSDFSEKLC--EFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred CCCCEEEEECcccceeE--EeecCcCCCCcEEEEECCCc
Confidence 5 458888765554322 11222345677888887765
No 385
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.75 E-value=50 Score=40.95 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=95.2
Q ss_pred CCCCCeEEEEEC---C--C--CCEEEEEeCCCeEEEEeC------CC---------CeEEEEEec---CCCCcEEEEEcc
Q 004203 105 PPPRSTIAAAFS---P--D--GKTLASTHGDHTVKIIDC------QT---------GSCLKVLHG---HRRTPWVVRFHP 159 (768)
Q Consensus 105 gH~~~VtslafS---P--D--G~~LaSgS~DgtVrVWDl------~t---------g~~l~~l~g---H~g~V~sVafSP 159 (768)
.-..+|..|.|. . + .++|++ -....+.|+.. .. ..++..+.. -+.+.-.++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 355678889998 2 2 235544 34456666661 11 123334431 133567899999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcE-----E-EEecCC----------CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004203 160 LNPTIIASGSLDHEVRLWNASTAEC-----I-GSRDFY----------RPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (768)
Q Consensus 160 ~dg~lLaSgS~DgtVrLWDl~sg~~-----i-~~l~h~----------~~V~svafSPDG~~LatgSdd~I~IWDl~t~~ 223 (768)
.+...||.....|...|||+..+.. . ...... +.-..+.|.++-..|++++..++.++|+++..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 8889999999999999999922111 1 111111 23347889999999999999999999998876
Q ss_pred cccCCeEeecCCCCeEEEEEccC--CCeEEEEEe
Q 004203 224 ETSSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE 255 (768)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPD--G~~LlaS~s 255 (768)
.... .........|..+.-+|+ +..++.|+.
T Consensus 236 ~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiLTs~ 268 (765)
T PF10214_consen 236 QTEY-LVTAKTWSWILDVKRSPDNPSHVFILTSK 268 (765)
T ss_pred ccch-hccCCChhheeeEEecCCccceEEEEecC
Confidence 5221 223335578999999988 444444443
No 386
>PRK13684 Ycf48-like protein; Provisional
Probab=90.75 E-value=29 Score=38.48 Aligned_cols=143 Identities=13% Similarity=0.071 Sum_probs=81.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 004203 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185 (768)
Q Consensus 107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i 185 (768)
...+.++.+.+++.+++++ ..|.+..-.-..++....+ ..-...++.+.+.+ ++..++.+ ..|.+++=....|+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence 5578999999998766554 4555544211223322222 23345788899999 77766654 4576654334444433
Q ss_pred EEec-----CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 186 GSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 186 ~~l~-----h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
.... ....+..+.|.+++..++++.++.+. ...+.++.-........-....+.+.|..+++.++++
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G 320 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG 320 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC
Confidence 3222 12357889999998877777666544 3444433211000001223467888888777755544
No 387
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.31 E-value=6.4 Score=45.90 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=65.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCCCC----CC------CeE--EEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203 81 RRGLASWVEAESLHHLRPKYCPLSPP----PR------STI--AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (768)
Q Consensus 81 g~~LvSgs~DgsIrlWd~~t~~L~gH----~~------~Vt--slafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (768)
+..++.+..++.|.-.|..++++.-+ .. .+. .+... ++..++.++.++.|+-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566677778888888887742211 11 010 11111 2368888889999999999999998777543
Q ss_pred CCC-----cE-EEEEccCCCCEEEEEe---------CCCeEEEEECCCCcEEEEec
Q 004203 149 RRT-----PW-VVRFHPLNPTIIASGS---------LDHEVRLWNASTAECIGSRD 189 (768)
Q Consensus 149 ~g~-----V~-sVafSP~dg~lLaSgS---------~DgtVrLWDl~sg~~i~~l~ 189 (768)
... +. ...+. + .+++.++ .++.|+-+|..+|+.+..+.
T Consensus 140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 221 11 11222 2 4444543 36789999999999887754
No 388
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.03 E-value=0.93 Score=54.77 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=72.3
Q ss_pred CCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEE
Q 004203 89 EAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIA 166 (768)
Q Consensus 89 ~DgsIrlWd~~t~~L~--gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLa 166 (768)
..|+|.++--...+-. ..+-.+++++|+|..-.|++|-.-|.+.+|...+.+.-.....|..+|..+.||+ +|..++
T Consensus 39 r~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~ 117 (1416)
T KOG3617|consen 39 RGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLM 117 (1416)
T ss_pred CCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEE
Confidence 3566766643222111 1222367899999988999999999999999988887777778999999999999 999999
Q ss_pred EEeCCCeEEEEECC
Q 004203 167 SGSLDHEVRLWNAS 180 (768)
Q Consensus 167 SgS~DgtVrLWDl~ 180 (768)
++..-|.|.+|...
T Consensus 118 t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 118 TLDNPGSVHLWRYD 131 (1416)
T ss_pred EcCCCceeEEEEee
Confidence 99999999999876
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.25 E-value=8.5 Score=46.34 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=64.9
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--ecCCCCeEEEEEc--CCCCE-EEEEECCeEEEEEc-----C
Q 004203 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFH--ASGEL-LAVASGHKLYIWRY-----N 220 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~h~~~V~svafS--PDG~~-LatgSdd~I~IWDl-----~ 220 (768)
.+.-+.-+. -++..+.-+...++.|||.+.+..... +...+.|..++|. |||+. |++|-.+.|.+|-- .
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344444455 444444444445899999999875544 4558899999995 57775 55555777777743 2
Q ss_pred CCccccCC---eEeecC-CCCeEEEEEccCCCeEEEEEe
Q 004203 221 MREETSSP---RIVLRT-RRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 221 t~~~~~~~---~~l~~h-~~~V~sVaFSPDG~~LlaS~s 255 (768)
.......+ ..+..+ ..+|.+..|.++|..++.+++
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 22111111 112222 468999999999997777766
No 390
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.90 E-value=2.4 Score=48.49 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=62.5
Q ss_pred CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEE-EEEccCCC-----------------CEE
Q 004203 104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV-VRFHPLNP-----------------TII 165 (768)
Q Consensus 104 ~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~s-VafSP~dg-----------------~lL 165 (768)
....+.+.++..+|++++.++..+-|.|.++|+.++..++.++|..++=.. +....... -++
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 345667899999999999999888899999999999999999987764211 11111011 134
Q ss_pred EEEeCCCeEEEEECCCCcEEEEec
Q 004203 166 ASGSLDHEVRLWNASTAECIGSRD 189 (768)
Q Consensus 166 aSgS~DgtVrLWDl~sg~~i~~l~ 189 (768)
+..-+-|.|-||+++.|..+..+.
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEE
Confidence 456778889999998887766553
No 391
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.88 E-value=1 Score=35.81 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=29.6
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 004203 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~ 184 (768)
...|..+.|+| ..+++|.+..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 34688999999 9999999999999999999 5543
No 392
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=88.85 E-value=16 Score=41.73 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=33.1
Q ss_pred eEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q 004203 92 SLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ 137 (768)
Q Consensus 92 sIrlWd~~t~~L---~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~ 137 (768)
.|++|+.....+ .--.+.|.++.|+.+. .|+.-..||.+++||+.
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 588888765421 1122899999999754 55567799999999986
No 393
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=88.79 E-value=1.2 Score=46.71 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=54.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CC-CCeE
Q 004203 119 GKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FY-RPIA 195 (768)
Q Consensus 119 G~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~-~~V~ 195 (768)
+..++.|+.+|.|++|+..-. .....+..-...|.++-..-+++.+..++..|+.|+.|++.-++.+.... |. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 457889999999999997632 11111111122343333333355588899999999999999887776654 33 2333
Q ss_pred EEEEcCCCCEEEEE
Q 004203 196 SIAFHASGELLAVA 209 (768)
Q Consensus 196 svafSPDG~~Latg 209 (768)
.......+++|+.+
T Consensus 150 ~~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIA 163 (238)
T ss_pred eeEEecCCceEEee
Confidence 33333334444443
No 394
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.68 E-value=26 Score=40.78 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=36.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE--EEEE----ec-CCCCcEEEEEccC
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL----HG-HRRTPWVVRFHPL 160 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l----~g-H~g~V~sVafSP~ 160 (768)
.-..|+|.|||++|++--..|.|++++..++.. +..+ .. -.+....|+++|+
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 457899999998887766679999998665532 1111 11 2355788999983
No 395
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.66 E-value=12 Score=40.74 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=71.2
Q ss_pred cEEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---CCCeEEEEEcCCCCEEEEEECC------eEEEEEcCC
Q 004203 152 PWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVASGH------KLYIWRYNM 221 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~sg~~i~~l~h---~~~V~svafSPDG~~LatgSdd------~I~IWDl~t 221 (768)
-..++|+|.-..-++.+.+-|+ ..++|....+...++.. ...+--=.|+|||.+|+..-+| -|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3457889966777788887774 67899988776655431 1123334699999999877532 299999985
Q ss_pred CccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 222 ~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+-. ..-.+..|.-....+.|.+||+.++....
T Consensus 150 ~fq--rvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 150 GFQ--RVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccc--eecccccCCcCcceeEEecCCcEEEEeCC
Confidence 432 22345566777889999999998877654
No 396
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.65 E-value=13 Score=41.40 Aligned_cols=144 Identities=19% Similarity=0.138 Sum_probs=85.5
Q ss_pred CEEEEEeCCCeEEEEeCCCC---------CCCCCCCCe-EEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE--EEEecCC
Q 004203 82 RGLASWVEAESLHHLRPKYC---------PLSPPPRST-IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHR 149 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~---------~L~gH~~~V-tslafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~ 149 (768)
..+.+.+.||++....+... .|-.-..++ ..-+++.++..++--+.+|.|+--|+...... ..+.--+
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 34556666666655555421 122222222 23345555566666889999999998765422 2221100
Q ss_pred ----------CCcEEEEEccCCCCEEEEEe---CCC-------eEEEEECCCCcEEEEecCCCCeEEEEEcCCCC-EEEE
Q 004203 150 ----------RTPWVVRFHPLNPTIIASGS---LDH-------EVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAV 208 (768)
Q Consensus 150 ----------g~V~sVafSP~dg~lLaSgS---~Dg-------tVrLWDl~sg~~i~~l~h~~~V~svafSPDG~-~Lat 208 (768)
+.-..+++++ ..+.|+.-- .++ .|.++|+.+++.+..+....++.++..+.|.+ +|+.
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~-~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHA-ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEET-TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred ccccccCcCCcceeeeeecc-ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 1233477877 444333311 111 69999999999999988777888999999887 6655
Q ss_pred EEC--CeEEEEEcCCCcccc
Q 004203 209 ASG--HKLYIWRYNMREETS 226 (768)
Q Consensus 209 gSd--d~I~IWDl~t~~~~~ 226 (768)
.+. +.+.+||..+++...
T Consensus 307 ~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EETTTTEEEEEETTT--EEE
T ss_pred EcCCCCeEEEEeCcCCcEEe
Confidence 553 449999999987654
No 397
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.40 E-value=26 Score=40.87 Aligned_cols=126 Identities=7% Similarity=0.050 Sum_probs=73.3
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEE-----------------EeCCCeEEEEECCCCc
Q 004203 121 TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS-----------------GSLDHEVRLWNASTAE 183 (768)
Q Consensus 121 ~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaS-----------------gS~DgtVrLWDl~sg~ 183 (768)
.++.++.+|.++..|.++|+.+....... ..+..+| +.+++. ...++.|.-.|+.+|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 67888899999999999999887654211 1123333 222221 1235789999999999
Q ss_pred EEEEecCC---------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 184 CIGSRDFY---------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 184 ~i~~l~h~---------~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
.+...... .+...-...-.+..|++++ ++.++.+|.++++.... ..........-+.|..+|+.++.+
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~--~~~~~~~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK--FRTPSGIQATPMTYEVNGKQYVGV 455 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE--EECCCCceEcCEEEEeCCEEEEEE
Confidence 87776533 1111001112456677766 56699999999987541 111211112223445567655444
No 398
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.96 E-value=9.8 Score=47.02 Aligned_cols=109 Identities=14% Similarity=0.028 Sum_probs=72.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC--------cEEEEEcc---------------CCCCEEEEEeCCCeE
Q 004203 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT--------PWVVRFHP---------------LNPTIIASGSLDHEV 174 (768)
Q Consensus 118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~--------V~sVafSP---------------~dg~lLaSgS~DgtV 174 (768)
.+..|+.++.++.|.-.|.+||+.+..+.-.... .+.+.+.. ..+..++.++.|+.|
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 4668888888999999999999988877532211 12233321 033478888899999
Q ss_pred EEEECCCCcEEEEecCCCCeE-------------EEEEcC--CCCEEEEEE-----------CCeEEEEEcCCCcccc
Q 004203 175 RLWNASTAECIGSRDFYRPIA-------------SIAFHA--SGELLAVAS-----------GHKLYIWRYNMREETS 226 (768)
Q Consensus 175 rLWDl~sg~~i~~l~h~~~V~-------------svafSP--DG~~LatgS-----------dd~I~IWDl~t~~~~~ 226 (768)
.-.|.++|+....+...+.+. .+.-.| .+..+++++ ++.|+-+|+++++...
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999999999988776544331 111122 133555553 2349999999988644
No 399
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=87.93 E-value=3.1 Score=46.30 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=45.3
Q ss_pred eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEEEEecCCCC
Q 004203 130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFYRP 193 (768)
Q Consensus 130 tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~sg~~i~~l~h~~~ 193 (768)
.|.+||+.+++++..+.- ...+.+|..+.++..+|+..+ .++.|.+||..+|+.+++.+.-+.
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 488889999999988873 235778999995665776654 578999999999999988764443
No 400
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=87.68 E-value=22 Score=42.07 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=48.5
Q ss_pred CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEE--EEEcCCCC
Q 004203 129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIAS--IAFHASGE 204 (768)
Q Consensus 129 gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~s--vafSPDG~ 204 (768)
+.|.-+|+.+|+.+...+......-.. ..- .+.+++.++.||.++.+|.++|+.+..+.....+.. +.|.-+|+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~ 516 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LAT-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGK 516 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEE-CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCE
Confidence 458888999998877665322211111 112 456777788899999999999999988765443332 33344565
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.65 E-value=13 Score=42.92 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=75.0
Q ss_pred CCeEEEEECCCCCEEEEEeC--------------------CCeEEEEeCCCCeEEEEEecCC--CCcEEEEEccC-CCCE
Q 004203 108 RSTIAAAFSPDGKTLASTHG--------------------DHTVKIIDCQTGSCLKVLHGHR--RTPWVVRFHPL-NPTI 164 (768)
Q Consensus 108 ~~VtslafSPDG~~LaSgS~--------------------DgtVrVWDl~tg~~l~~l~gH~--g~V~sVafSP~-dg~l 164 (768)
.--+++-|.|.-+.++|... -.++.+||+.+.+.++++.--. ..+..|+|..+ +..+
T Consensus 181 ~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~ 260 (461)
T PF05694_consen 181 PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANY 260 (461)
T ss_dssp -----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--E
T ss_pred CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccc
Confidence 34577888888888887643 4679999999999998886322 23556777541 2333
Q ss_pred -EEEEeCCCeEEEEEC-CCCcEE----EEec---C---------------CCCeEEEEEcCCCCEEEEEE--CCeEEEEE
Q 004203 165 -IASGSLDHEVRLWNA-STAECI----GSRD---F---------------YRPIASIAFHASGELLAVAS--GHKLYIWR 218 (768)
Q Consensus 165 -LaSgS~DgtVrLWDl-~sg~~i----~~l~---h---------------~~~V~svafSPDG~~LatgS--dd~I~IWD 218 (768)
++.+....+|.+|-- +.++-. ..+. . ..-|+.+..|.|.++|++.+ .|.|+.||
T Consensus 261 gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYD 340 (461)
T PF05694_consen 261 GFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYD 340 (461)
T ss_dssp EEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred eEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEe
Confidence 444444556666644 344321 1111 0 24478999999999999998 56699999
Q ss_pred cCCCccccCCe-Eeec---------------CCCCeEEEEEccCCCeEEEEEe
Q 004203 219 YNMREETSSPR-IVLR---------------TRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 219 l~t~~~~~~~~-~l~~---------------h~~~V~sVaFSPDG~~LlaS~s 255 (768)
+.........- ...+ -.....-|+.|-||+.|.++.+
T Consensus 341 ISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 341 ISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred cCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 98765322000 0111 1234578999999999988887
No 402
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.63 E-value=1.7 Score=53.93 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=70.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeE-EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCC---
Q 004203 118 DGKTLASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYR--- 192 (768)
Q Consensus 118 DG~~LaSgS~DgtVrVWDl~tg~~-l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~--- 192 (768)
.+..++.|+..|.|-..|....-. ...=..-+++|.+++|+- +|.+++.|-.+|.|.+||+..++..+.+. +..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 456788899999999998764311 111123457899999999 99999999999999999999988877754 333
Q ss_pred CeEEEEEcCCCCEEEEEECCeEEEEEc
Q 004203 193 PIASIAFHASGELLAVASGHKLYIWRY 219 (768)
Q Consensus 193 ~V~svafSPDG~~LatgSdd~I~IWDl 219 (768)
.+--+.|..++..+.++..++ .+|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~G-sf~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGG-SFWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCC-ceEEE
Confidence 344456666777666655433 25544
No 403
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.35 E-value=3.3 Score=43.27 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=51.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEe---------------cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcc
Q 004203 161 NPTIIASGSLDHEVRLWNASTAECIGSR---------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREE 224 (768)
Q Consensus 161 dg~lLaSgS~DgtVrLWDl~sg~~i~~l---------------~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~ 224 (768)
.+++++..+.+|.+++||+.+++.+..- .....|..+..+.+|.-|++-+++..+.||.+.+.-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~W 99 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGCW 99 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccccee
Confidence 6788999999999999999998764431 133577888889899888888888889998776643
No 404
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.18 E-value=19 Score=39.58 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=71.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEE
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIG 186 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l-~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg-~~i~ 186 (768)
....+....++..++ .+..|.|+.=. +.|+.- .....-.+.+..+.-++ ++++++.++.-..+.-||--.. =...
T Consensus 105 s~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~ 181 (302)
T PF14870_consen 105 SPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPH 181 (302)
T ss_dssp -EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEE
T ss_pred CeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEE
Confidence 334444443443333 44555544432 334432 23345557788888888 8998888776666667775432 1223
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC-CCccccCCeE-eecCCCCeEEEEEccCCCeEEEEEe
Q 004203 187 SRDFYRPIASIAFHASGELLAVASGHKLYIWRYN-MREETSSPRI-VLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 187 ~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~-t~~~~~~~~~-l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.......|..|.|.|++.+.+.+.++.|++=+.. ..+.-.++.. .......+..++|.+++...+++++
T Consensus 182 ~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 182 NRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp E--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred ccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 3345689999999999988777766668887722 2221111111 1123445899999999886665554
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=87.08 E-value=24 Score=39.51 Aligned_cols=99 Identities=10% Similarity=0.078 Sum_probs=55.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-----CeEEEEEe---c----CCCCcEEEEEccCCCCEEEEEeCC----
Q 004203 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSCLKVLH---G----HRRTPWVVRFHPLNPTIIASGSLD---- 171 (768)
Q Consensus 108 ~~VtslafSPDG~~LaSgS~DgtVrVWDl~t-----g~~l~~l~---g----H~g~V~sVafSP~dg~lLaSgS~D---- 171 (768)
...++++|.++| |+++......++.|.+. ++....+. . +......++|.| |+.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASK 148 (367)
T ss_pred CCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCce
Confidence 346889999988 44444443333435432 12222222 2 123467899999 88877664421
Q ss_pred ---------------CeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEE
Q 004203 172 ---------------HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS 210 (768)
Q Consensus 172 ---------------gtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgS 210 (768)
+.|.-+|..+++.. .+. -......++|+|+|+++++-.
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 34555666554432 222 223346789999998876544
No 406
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.77 E-value=21 Score=42.29 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=45.1
Q ss_pred CeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeE
Q 004203 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL 250 (768)
Q Consensus 172 gtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~L 250 (768)
+.|.-+|+.+|+.........+...-...-.+.+++.++ ++.++.+|.++++.+.. ..+ +....-.-+.|.-+|+..
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~-~~~-g~~~~a~P~ty~~~G~qY 518 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWK-FKT-GSGIVGPPVTYEQDGKQY 518 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEE-EeC-CCCceecCEEEEeCCEEE
Confidence 468888999998877765433321111222445666666 56699999999987541 111 111111224444577765
Q ss_pred EEE
Q 004203 251 LLT 253 (768)
Q Consensus 251 laS 253 (768)
++.
T Consensus 519 v~~ 521 (527)
T TIGR03075 519 VAV 521 (527)
T ss_pred EEE
Confidence 543
No 407
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.76 E-value=13 Score=43.35 Aligned_cols=136 Identities=12% Similarity=0.114 Sum_probs=86.4
Q ss_pred ECCCCCEEEE-EeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCC------CCEEEEEeCCCeEEEEECCC-CcEEE
Q 004203 115 FSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN------PTIIASGSLDHEVRLWNAST-AECIG 186 (768)
Q Consensus 115 fSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~d------g~lLaSgS~DgtVrLWDl~s-g~~i~ 186 (768)
...|..+|+. ++.-..++-.|++.|+.+....-|..- .+.|.|.. ...-+.|-.|..|.-.|-+- |..+.
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 3345566654 444667888899999999999877664 47888821 11223355566666667664 33333
Q ss_pred EecCCCCeEEEEEcC----CCCEEEEEECCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 187 SRDFYRPIASIAFHA----SGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 187 ~l~h~~~V~svafSP----DG~~LatgSdd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.......++.-.|+. .+-++++++.++ |++||--.... ...+.+-...|..|..+.+|+++++++.
T Consensus 553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA---KtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA---KTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred eeeehhccccccccccccccCceEEEecCCCceeeehhhcchh---hhcCcccccceeeeEeecCCcEEEEeec
Confidence 333333333333332 345888888655 99999644332 1245566788999999999999999987
No 408
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.66 E-value=1.7 Score=34.06 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=27.8
Q ss_pred CCcEEEEEccCCC--CEEEEEeCCCeEEEEECCC
Q 004203 150 RTPWVVRFHPLNP--TIIASGSLDHEVRLWNAST 181 (768)
Q Consensus 150 g~V~sVafSP~dg--~lLaSgS~DgtVrLWDl~s 181 (768)
++|+++.|+|..+ ++|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998556 7999999899999999995
No 409
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=85.28 E-value=95 Score=37.49 Aligned_cols=144 Identities=20% Similarity=0.207 Sum_probs=81.5
Q ss_pred CCCCCCCCeEEEEECCCCCEEEEEeCCC----eEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe------CC
Q 004203 102 PLSPPPRSTIAAAFSPDGKTLASTHGDH----TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS------LD 171 (768)
Q Consensus 102 ~L~gH~~~VtslafSPDG~~LaSgS~Dg----tVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS------~D 171 (768)
....+...+..+.|+|||+.++..+.++ .+++.+.. + .+..+...+....|+| +++.++... .|
T Consensus 54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~~~ 127 (620)
T COG1506 54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSP-DGDRIAFLTAEGASKRD 127 (620)
T ss_pred cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCC-CCCeEEEEecccccccC
Confidence 3455777889999999999999887432 34444544 3 2333445577788898 666555521 12
Q ss_pred Ce-------EEEEECCCC-cE------------EEEecCCCCeEEEEEcCCCCEEEEEE--CC--e----EEEEEcCCCc
Q 004203 172 HE-------VRLWNASTA-EC------------IGSRDFYRPIASIAFHASGELLAVAS--GH--K----LYIWRYNMRE 223 (768)
Q Consensus 172 gt-------VrLWDl~sg-~~------------i~~l~h~~~V~svafSPDG~~LatgS--dd--~----I~IWDl~t~~ 223 (768)
+. +.+|....+ +. .........+....+++++..++... ++ . ..++...++.
T Consensus 128 ~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (620)
T COG1506 128 GGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE 207 (620)
T ss_pred CceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc
Confidence 22 334433333 11 11112334566677777777666654 21 1 3333331222
Q ss_pred cccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 224 ~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
..........+..+.|.++|+.+...+.
T Consensus 208 ----~~~~~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 208 ----LESLTPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred ----eEEEcCCCceeeeeeeCCCCCeeEEecc
Confidence 2344455667999999999996665443
No 410
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.26 E-value=9.7 Score=43.77 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=77.8
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--c---CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC
Q 004203 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--D---FYRPIASIAFHASGELLAVASGHKLYIWRYNMR 222 (768)
Q Consensus 148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l--~---h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~ 222 (768)
..|+|.++.||+ |.+.+|.-..|++|-+++....+.+... . ....|....|+.+ .-+|.-++.++-+|.....
T Consensus 65 d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPE 142 (657)
T ss_pred CCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchh
Confidence 456899999999 9999999999999999998544333222 2 2235888999866 6788888888888877665
Q ss_pred ccccCCeEeecCCCCeEEEEEccCCCeEEEEEe
Q 004203 223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~s 255 (768)
.. ....+..++-.|+.-.|.++-+.++.++.
T Consensus 143 kr--slRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 143 KR--SLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hh--hhhhhhhcccCccEEEEccccceEeeecc
Confidence 43 23456678889999999999887665544
No 411
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.12 E-value=43 Score=38.29 Aligned_cols=139 Identities=12% Similarity=0.038 Sum_probs=78.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE--EEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc---
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--- 183 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~--- 183 (768)
....+..++||.+++.+..-..++-||- |.. ...-......+..+.|.+ ++.+++.+ .+|.+ +|....++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceE-EEecCCCCccc
Confidence 3455677788877776654433334442 322 111122345678899988 77776655 55655 44444443
Q ss_pred --EEEEecC---CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 184 --CIGSRDF---YRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 184 --~i~~l~h---~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
....... ...+..+.|.+++..+++|..+.+.+.. +.++.-........-...++.+.|.++++.++++
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence 2222222 2358899999999988887777655553 3333211000011224578899998887765554
No 412
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.07 E-value=16 Score=38.28 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=67.9
Q ss_pred CEEEEEeCCCeEEEEeCCC--CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC------eEEEE---ECC--CCcEE-
Q 004203 120 KTLASTHGDHTVKIIDCQT--GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH------EVRLW---NAS--TAECI- 185 (768)
Q Consensus 120 ~~LaSgS~DgtVrVWDl~t--g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg------tVrLW---Dl~--sg~~i- 185 (768)
+.|+.+.....|.+|++.+ .+....|.. -+.|..+.++. .|+++++--.+. .+|+| +.. ..+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 4554546677899999983 344556654 37799999999 899999954432 45664 222 11111
Q ss_pred -EE---------------------ecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004203 186 -GS---------------------RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (768)
Q Consensus 186 -~~---------------------l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~ 223 (768)
+. +.......+++-.|-..-|++|+++++.+|.+....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT 166 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence 11 223446678888887777888999999999876554
No 413
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=84.10 E-value=17 Score=41.39 Aligned_cols=136 Identities=13% Similarity=0.068 Sum_probs=70.2
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC--eEEEEECCCCCEEEEEeCCCeEEEEeCCC---C------eEEEEE
Q 004203 77 GRDARRGLASWVEAESLHHLRPKYCPLSPPPRS--TIAAAFSPDGKTLASTHGDHTVKIIDCQT---G------SCLKVL 145 (768)
Q Consensus 77 ~~d~g~~LvSgs~DgsIrlWd~~t~~L~gH~~~--VtslafSPDG~~LaSgS~DgtVrVWDl~t---g------~~l~~l 145 (768)
.......|+.+...|.|-+|.....+..++... -....|.+ ....++.-.+-|+.. . .+...+
T Consensus 9 ~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 9 FAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRR------FSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp EETTTTEEEEEETTS-EEEEEEEE------------------S--------GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred ecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccc------ccccCCCcceEEehhhCCcccccccCchhhe
Confidence 344667777777777777777654433321111 11111111 011122223333322 1 233444
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCCeEEEEEcC-----CC---CEEEE
Q 004203 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHA-----SG---ELLAV 208 (768)
Q Consensus 146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~---------h~~~V~svafSP-----DG---~~Lat 208 (768)
....++|.+++.| |-.+++.|..+|.+.|.|++....+..-. ....++++.|.. |+ -.|.+
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 5567899999986 47799999999999999998887766521 233677888863 33 26777
Q ss_pred EEC-CeEEEEEcC
Q 004203 209 ASG-HKLYIWRYN 220 (768)
Q Consensus 209 gSd-d~I~IWDl~ 220 (768)
|++ |.+.+|.+.
T Consensus 161 GTn~G~v~~fkIl 173 (395)
T PF08596_consen 161 GTNSGNVLTFKIL 173 (395)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCCEEEEEEe
Confidence 775 558888764
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.67 E-value=21 Score=38.02 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=68.2
Q ss_pred EEEEECCCCCEEEEE-eCCCeEEEEe--CCCCeE-----EEEEecC----CCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203 111 IAAAFSPDGKTLAST-HGDHTVKIID--CQTGSC-----LKVLHGH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (768)
Q Consensus 111 tslafSPDG~~LaSg-S~DgtVrVWD--l~tg~~-----l~~l~gH----~g~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (768)
++++|+.|.+.++.- +.+..|.-|| +.+|.. +..++.. .-....++... +|++.++.-.-++|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 578999988877754 5688997887 677642 2233221 11123355555 788888888888999999
Q ss_pred CCCCcEEEEecC-CCCeEEEEEcCCC-CEEEEEE
Q 004203 179 ASTAECIGSRDF-YRPIASIAFHASG-ELLAVAS 210 (768)
Q Consensus 179 l~sg~~i~~l~h-~~~V~svafSPDG-~~LatgS 210 (768)
..+|+.+.++.. ...++++||--.+ ..|++.+
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 999999888764 5689999996432 3444444
No 415
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=81.85 E-value=16 Score=39.72 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=75.5
Q ss_pred CeEEEEeCCCC-----CC-----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEec-CCCCcEEEEEc
Q 004203 91 ESLHHLRPKYC-----PL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHG-HRRTPWVVRFH 158 (768)
Q Consensus 91 gsIrlWd~~t~-----~L-----~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~g-H~g~V~sVafS 158 (768)
|.|.++++... ++ ...+++|++++-- +|+ |+.+. ...|++|++...+ ....-.- ..-.+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~- 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV- 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-
Confidence 67777777662 21 2457789988877 444 44444 3689999998877 4332221 2224555554
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-CcEEEEec---CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCC
Q 004203 159 PLNPTIIASGSLDHEVRLWNAST-AECIGSRD---FYRPIASIAFHASGELLAVASG-HKLYIWRYNM 221 (768)
Q Consensus 159 P~dg~lLaSgS~DgtVrLWDl~s-g~~i~~l~---h~~~V~svafSPDG~~LatgSd-d~I~IWDl~t 221 (768)
.+++++.|...+.+.++..+. ...+..+. ....+.++.|-+|++.++++.. +.+.++.+..
T Consensus 138 --~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 138 --FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp --ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred --cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 356888998888788775443 22222222 3456888889877776666664 5588888763
No 416
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=81.46 E-value=29 Score=43.39 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=99.4
Q ss_pred EEEEeCCCCC-CCCC-------CCCeEEEEECCC-CCEEEEEeC----------CCeEEEEeCCCCeEEEEEecC--CCC
Q 004203 93 LHHLRPKYCP-LSPP-------PRSTIAAAFSPD-GKTLASTHG----------DHTVKIIDCQTGSCLKVLHGH--RRT 151 (768)
Q Consensus 93 IrlWd~~t~~-L~gH-------~~~VtslafSPD-G~~LaSgS~----------DgtVrVWDl~tg~~l~~l~gH--~g~ 151 (768)
++++|..+-+ +..| -.+|.++.|..| +.++++|.. .|.|.+|.+..++.++.+..+ .+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 5666666542 1122 224666679887 677777754 577888887774444444322 355
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCe
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPR 229 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~ 229 (768)
|.++..- +++++|.- ...|+||++.+++.++. -.+..++..+...-.|..+++|. -+.+.+..++..+..-...
T Consensus 832 v~aL~~f--ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 832 VYALVEF--NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred eeehhhh--CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 6655432 57777654 45799999998855554 45778888899999999999988 4556666665554211111
Q ss_pred EeecCCCCeEEEEEccCCCeEEEE
Q 004203 230 IVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 230 ~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
...-+..+.+++.+-.+..++.+.
T Consensus 908 ArD~~p~Wmtaveil~~d~ylgae 931 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDDTYLGAE 931 (1096)
T ss_pred ehhhCccceeeEEEecCceEEeec
Confidence 222356778888887766655443
No 417
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.23 E-value=30 Score=33.70 Aligned_cols=109 Identities=12% Similarity=0.087 Sum_probs=68.7
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCC--------eEEEEEecCCCCcEEEEEcc---C-CCCEEEEEeCCCeEEEEECC
Q 004203 113 AAFSPDGKTLASTHGDHTVKIIDCQTG--------SCLKVLHGHRRTPWVVRFHP---L-NPTIIASGSLDHEVRLWNAS 180 (768)
Q Consensus 113 lafSPDG~~LaSgS~DgtVrVWDl~tg--------~~l~~l~gH~g~V~sVafSP---~-dg~lLaSgS~DgtVrLWDl~ 180 (768)
-.|......|+.++.-++|.|++.... ..+..|. -...|++++-.+ . +.+.|+.|+.. .|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 345555556777777788888876432 2233332 345577665433 1 35566666654 68999999
Q ss_pred CCcEEEEecCCCCeEEEEEcC----CCCEEEEEECCeEEEEEcCCCc
Q 004203 181 TAECIGSRDFYRPIASIAFHA----SGELLAVASGHKLYIWRYNMRE 223 (768)
Q Consensus 181 sg~~i~~l~h~~~V~svafSP----DG~~LatgSdd~I~IWDl~t~~ 223 (768)
....+......+.++++.+-. +..++++|+.-.|+-||....+
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 877766666678888887743 3456666666667777765544
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.16 E-value=54 Score=41.82 Aligned_cols=123 Identities=14% Similarity=0.136 Sum_probs=81.5
Q ss_pred EEEeCCCeEEEEeCCCC---------CCCCC------CCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeE-EEEEec
Q 004203 85 ASWVEAESLHHLRPKYC---------PLSPP------PRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSC-LKVLHG 147 (768)
Q Consensus 85 vSgs~DgsIrlWd~~t~---------~L~gH------~~~VtslafSPDG-~~LaSgS~DgtVrVWDl~tg~~-l~~l~g 147 (768)
+.-+++..|..+|++.- .|..| ..-..++.|+|.- ...+.+..|+.|++.-+..-.. +..+.
T Consensus 118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p- 196 (1405)
T KOG3630|consen 118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP- 196 (1405)
T ss_pred EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-
Confidence 34445567888998632 12222 2345788899843 3456777888888887643221 22222
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-----cCCCCeEEEEEcCCCCEEEEEE
Q 004203 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----DFYRPIASIAFHASGELLAVAS 210 (768)
Q Consensus 148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l-----~h~~~V~svafSPDG~~LatgS 210 (768)
-+..+++++|+| .|+.++.|...|++.-|.-. .+....+ .....|.+++|-....+|++-+
T Consensus 197 ~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 197 VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred cccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 345688999999 99999999999998887653 3333332 1356899999998888777654
No 419
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=80.43 E-value=1.5e+02 Score=36.14 Aligned_cols=281 Identities=18% Similarity=0.112 Sum_probs=146.6
Q ss_pred ceeecCCcceeecCCCCeEEEEEecCCCEEEEEeCCC------eEEEEeCCCCCCCC--CCCCeEEEEECCCCCEEEEEe
Q 004203 55 SKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAE------SLHHLRPKYCPLSP--PPRSTIAAAFSPDGKTLASTH 126 (768)
Q Consensus 55 ~k~~wd~s~~~~s~s~~~l~~a~~d~g~~LvSgs~Dg------sIrlWd~~t~~L~g--H~~~VtslafSPDG~~LaSgS 126 (768)
.+.++|.+..+-..+|..+-.+.-+....++.++.|. ++++-|+.++.+.. -.....+++|.+|++.|+...
T Consensus 113 eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~ 192 (682)
T COG1770 113 EEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTR 192 (682)
T ss_pred eeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEE
Confidence 4455666655444455555555444455555555443 48888998885443 233478899999999887666
Q ss_pred CCCe-----EEEEeCCC--CeEEEEEecCCCCcE-EEEEccCCCCEEEEEeCC---CeEEEEECCCCcE--EEEecCCCC
Q 004203 127 GDHT-----VKIIDCQT--GSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSLD---HEVRLWNASTAEC--IGSRDFYRP 193 (768)
Q Consensus 127 ~Dgt-----VrVWDl~t--g~~l~~l~gH~g~V~-sVafSP~dg~lLaSgS~D---gtVrLWDl~sg~~--i~~l~h~~~ 193 (768)
.|-. |....+.+ ..-...+........ .+.-+. ..++|+....| ..+++.|....+. .....-...
T Consensus 193 ~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~-s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g 271 (682)
T COG1770 193 LDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSR-SEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENG 271 (682)
T ss_pred EcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeecc-CCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCC
Confidence 5422 33334444 222333333322211 222222 44555544333 3678888776443 222222211
Q ss_pred e-EEEEEcCCCCEEEE-EE-CCe-EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEEeeCCcCCCCcceeEe
Q 004203 194 I-ASIAFHASGELLAV-AS-GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLA 269 (768)
Q Consensus 194 V-~svafSPDG~~Lat-gS-dd~-I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~svwdl~sg~~~~~L~ 269 (768)
+ ..+. ..+.+++. .. +++ .+|+.............+..|+..++--.|+--..+|+...+...+
T Consensus 272 ~eY~~e--h~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~gl---------- 339 (682)
T COG1770 272 VEYSVE--HGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGL---------- 339 (682)
T ss_pred cEEeee--ecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCC----------
Confidence 1 1111 12443333 33 333 6666544411111234566677777666676666767655442222
Q ss_pred ecCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce-EEEEecCCCEEEEEecCCCCCcceEEeccCCCceeeeeccc
Q 004203 270 TSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYS 348 (768)
Q Consensus 270 t~~G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil-~psFSpDG~rIv~~~~d~~~Gs~~~~~~~~ss~~~rl~~~~ 348 (768)
+.+.+++...+....+....... ..+ ...--.|..+|.+.-.+-+.+...+..++.+...+.|-.-.
T Consensus 340 ----------p~v~v~~~~~~~~~~i~f~~~ay--~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqqe 407 (682)
T COG1770 340 ----------PRVVVRDRKTGEERGIAFDDEAY--SAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQE 407 (682)
T ss_pred ----------ceEEEEecCCCceeeEEecchhh--hccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEecc
Confidence 12222222222211111111111 111 22333456778877788889999999999999888887777
Q ss_pred CCC-CCcCceecc
Q 004203 349 TPS-GQYELVLSP 360 (768)
Q Consensus 349 ~~t-~~~~~~v~P 360 (768)
-+. -+|++|++=
T Consensus 408 V~~g~dp~~Y~s~ 420 (682)
T COG1770 408 VPGGFDPEDYVSR 420 (682)
T ss_pred CCCCCChhHeEEE
Confidence 777 788888874
No 420
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=80.36 E-value=32 Score=39.32 Aligned_cols=182 Identities=12% Similarity=0.032 Sum_probs=92.8
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC------CC------CCCCCeEEEEECC-----CC---CEEEEEeCCCe
Q 004203 71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP------LS------PPPRSTIAAAFSP-----DG---KTLASTHGDHT 130 (768)
Q Consensus 71 ~~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~~------L~------gH~~~VtslafSP-----DG---~~LaSgS~Dgt 130 (768)
+.+......+-+.++.+.++|.+.+.|.+... +. .....|+++.|+- |+ -.|++|.+.|.
T Consensus 87 g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~ 166 (395)
T PF08596_consen 87 GPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN 166 (395)
T ss_dssp -SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred CcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence 34444444577889999999999999997541 11 2345688898873 33 36889999999
Q ss_pred EEEEeCC--C-CeE----EEEEecCCCCcEEEE-EccCCC-------------------CEEEEEeCCCeEEEEECCCCc
Q 004203 131 VKIIDCQ--T-GSC----LKVLHGHRRTPWVVR-FHPLNP-------------------TIIASGSLDHEVRLWNASTAE 183 (768)
Q Consensus 131 VrVWDl~--t-g~~----l~~l~gH~g~V~sVa-fSP~dg-------------------~lLaSgS~DgtVrLWDl~sg~ 183 (768)
+.+|.+. . +.. ......+.++|..+. |+.+++ .-++....+..++++...+.+
T Consensus 167 v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k 246 (395)
T PF08596_consen 167 VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSK 246 (395)
T ss_dssp EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---
T ss_pred EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCc
Confidence 9999764 2 211 122234556666655 433111 123444456789999998877
Q ss_pred EEEEec-CCCCeEEEEEc-----CCCCEEEEEE-CCeEEEEEcCCCccccCCeEee--cCCCCeEEEEEccCCCeEEEE
Q 004203 184 CIGSRD-FYRPIASIAFH-----ASGELLAVAS-GHKLYIWRYNMREETSSPRIVL--RTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 184 ~i~~l~-h~~~V~svafS-----PDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~--~h~~~V~sVaFSPDG~~LlaS 253 (768)
...+.. ..-....+.+- ..+..|++-. ++.|+++.+-.-+.... ..+. .....+....|+++|..++..
T Consensus 247 ~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~-~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 247 GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKS-VSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEE-EE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhc-ccCCCccccccccccEECCCCCEEEEe
Confidence 765533 22233344553 2444555555 56699999987665431 1111 112234566789999866544
No 421
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.80 E-value=57 Score=38.02 Aligned_cols=107 Identities=14% Similarity=0.188 Sum_probs=62.6
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE--e------cCCCCeEEEEEcCCC------CEEEEEE---
Q 004203 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--R------DFYRPIASIAFHASG------ELLAVAS--- 210 (768)
Q Consensus 148 H~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l------~h~~~V~svafSPDG------~~LatgS--- 210 (768)
.-...+.|+|.| |+++|++-...|.|++++-.++..... + ..++....|+|+|+- .+|++..
T Consensus 28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 345678899999 887776655569999998765532211 1 124677899999884 3455442
Q ss_pred --------CCeEEEEEcCCCc-cccCCeEeec-C----CCCeEEEEEccCCCeEEEEEe
Q 004203 211 --------GHKLYIWRYNMRE-ETSSPRIVLR-T----RRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 211 --------dd~I~IWDl~t~~-~~~~~~~l~~-h----~~~V~sVaFSPDG~~LlaS~s 255 (768)
...|..|.+.... .......+.. . ...-..|.|.|||..+++++.
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1236666664221 1111111211 1 123457889999986666664
No 422
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.04 E-value=12 Score=27.65 Aligned_cols=40 Identities=33% Similarity=0.498 Sum_probs=29.2
Q ss_pred CCCCEEEEEe-CCCeEEEEeCCCCeEEEEEecCCCCcEEEEE
Q 004203 117 PDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157 (768)
Q Consensus 117 PDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~g~V~sVaf 157 (768)
||+++|+++. .+++|.++|..+++.+..+.- ......+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5788777655 588999999999988888765 344445555
No 423
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=76.05 E-value=1.6e+02 Score=36.83 Aligned_cols=144 Identities=12% Similarity=0.096 Sum_probs=81.9
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCC---CCCCCe-------------EEEEECC--CCCEEEEEeC----------CCeEEE
Q 004203 82 RGLASWVEAESLHHLRPKYCPLS---PPPRST-------------IAAAFSP--DGKTLASTHG----------DHTVKI 133 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~~L~---gH~~~V-------------tslafSP--DG~~LaSgS~----------DgtVrV 133 (768)
.+|+....|+.+.-.|.++++.. +..+.| ..+.-+| .+..++.++. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 46777778888888888877432 111111 1112223 2345566643 688999
Q ss_pred EeCCCCeEEEEEecC-----------------CCCc-EEEEEccCCCCEEEEEe------------------CCCeEEEE
Q 004203 134 IDCQTGSCLKVLHGH-----------------RRTP-WVVRFHPLNPTIIASGS------------------LDHEVRLW 177 (768)
Q Consensus 134 WDl~tg~~l~~l~gH-----------------~g~V-~sVafSP~dg~lLaSgS------------------~DgtVrLW 177 (768)
+|++||+.+..+..- ...+ ..+++.| ...+++.+. ..+.|.-.
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 999999988776410 0111 1244555 333333311 12467778
Q ss_pred ECCCCcEEEEecC-CC---------CeEEEEEcC-CCC---EEEEEECC-eEEEEEcCCCcccc
Q 004203 178 NASTAECIGSRDF-YR---------PIASIAFHA-SGE---LLAVASGH-KLYIWRYNMREETS 226 (768)
Q Consensus 178 Dl~sg~~i~~l~h-~~---------~V~svafSP-DG~---~LatgSdd-~I~IWDl~t~~~~~ 226 (768)
|+++|+....+.. +. ...-+.+.- +|+ .++.++.+ .++++|-++++.+.
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 8899988776542 11 112223333 663 56666644 49999999987654
No 424
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=75.54 E-value=92 Score=35.36 Aligned_cols=179 Identities=11% Similarity=0.023 Sum_probs=93.4
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCC--CC--C--------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE
Q 004203 74 FEAGRDARRGLASWVEAESLHHLRPK--YC--P--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC 141 (768)
Q Consensus 74 ~~a~~d~g~~LvSgs~DgsIrlWd~~--t~--~--------L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~ 141 (768)
-....+++..++++..+|-|..-+.. .. . ...-.+.-..++|...|.-|+.+..=.=+...+.+.++.
T Consensus 69 ~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a 148 (376)
T KOG1520|consen 69 YTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLA 148 (376)
T ss_pred eEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcc
Confidence 34444566667777778887777662 11 1 111225567899999886666664332333334443331
Q ss_pred EEEEecCCC-----CcEEEEEccCCCCEEEE-----------------EeCCCeEEEEECCCCcEEEEecCCCCeEEEEE
Q 004203 142 LKVLHGHRR-----TPWVVRFHPLNPTIIAS-----------------GSLDHEVRLWNASTAECIGSRDFYRPIASIAF 199 (768)
Q Consensus 142 l~~l~gH~g-----~V~sVafSP~dg~lLaS-----------------gS~DgtVrLWDl~sg~~i~~l~h~~~V~svaf 199 (768)
..+..+.. -.+.+..++ ++.+..+ +..+|.+.-||..+......++.-.-.+.++.
T Consensus 149 -~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaL 226 (376)
T KOG1520|consen 149 -ELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLAL 226 (376)
T ss_pred -eeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccC
Confidence 11111100 122344444 3333333 33456666677665543333333344567899
Q ss_pred cCCCCEEEEEECC--eEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 200 HASGELLAVASGH--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 200 SPDG~~LatgSdd--~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
+||+.+++++-.. +|+-|-+...+.........+-.+..-.|..+++|.+.+.-.
T Consensus 227 S~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~ 283 (376)
T KOG1520|consen 227 SPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALH 283 (376)
T ss_pred CCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEe
Confidence 9999998887643 355555544433111112222334444566778998766543
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.49 E-value=37 Score=41.79 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=52.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeC---------CCCeE---EEEE--------ecCCCCcEEEEEccCC--CCEE
Q 004203 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDC---------QTGSC---LKVL--------HGHRRTPWVVRFHPLN--PTII 165 (768)
Q Consensus 108 ~~VtslafSPDG~~LaSgS~DgtVrVWDl---------~tg~~---l~~l--------~gH~g~V~sVafSP~d--g~lL 165 (768)
-.|..+.+||+|++|+..|..+.+.+.=- +.|+. .+++ ..+...|..+.|||.. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 36899999999999998888664433321 11221 1111 1334578899999942 5788
Q ss_pred EEEeCCCeEEEEECCCC
Q 004203 166 ASGSLDHEVRLWNASTA 182 (768)
Q Consensus 166 aSgS~DgtVrLWDl~sg 182 (768)
+.-..|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 88889999999999764
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=73.34 E-value=33 Score=38.01 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=55.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE---EEEE----ecCCCCcEEEEEccC---CCCEEEEEeCC-------
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVL----HGHRRTPWVVRFHPL---NPTIIASGSLD------- 171 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~---l~~l----~gH~g~V~sVafSP~---dg~lLaSgS~D------- 171 (768)
.-++|+|.|||++|++ ...|.|++++ .++.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999988765 5599999999 55543 2222 122345788999992 24444444421
Q ss_pred -CeEEEEECCCC--cE-----E-EEec----CCCCeEEEEEcCCCCEEEEEE
Q 004203 172 -HEVRLWNASTA--EC-----I-GSRD----FYRPIASIAFHASGELLAVAS 210 (768)
Q Consensus 172 -gtVrLWDl~sg--~~-----i-~~l~----h~~~V~svafSPDG~~LatgS 210 (768)
..|.-|.+..+ .. + ..+. ....-..+.|.|||.+.++.+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 23444544433 11 1 1111 233456799999997555544
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=73.20 E-value=29 Score=38.36 Aligned_cols=105 Identities=13% Similarity=0.204 Sum_probs=58.1
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---EEEe-----cCCCCeEEEEEcCC---CCEEEEE-E-C------
Q 004203 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGSR-----DFYRPIASIAFHAS---GELLAVA-S-G------ 211 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---i~~l-----~h~~~V~svafSPD---G~~Latg-S-d------ 211 (768)
..+.|+|.| +++++++ .+.|.|++++ ..+.. +... ........++++|+ ..+|++. + .
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 367899999 7877665 6699999999 44443 2222 13456789999995 3333333 3 1
Q ss_pred --CeEEEEEcCCC--ccccC--C-eEeec---CCCCeEEEEEccCCCeEEEEEeeCC
Q 004203 212 --HKLYIWRYNMR--EETSS--P-RIVLR---TRRSLRAVHFHPHAAPLLLTAEVND 258 (768)
Q Consensus 212 --d~I~IWDl~t~--~~~~~--~-~~l~~---h~~~V~sVaFSPDG~~LlaS~svwd 258 (768)
..|..|.+... ..... . ..... ....-..|.|.|||..+++.+...+
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 12666666544 11100 0 01111 2345677999999976666665433
No 428
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=73.17 E-value=2.3 Score=52.03 Aligned_cols=113 Identities=10% Similarity=0.164 Sum_probs=67.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEE-----------EccCCCCEEEEEeCCCeEEEEE
Q 004203 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR-----------FHPLNPTIIASGSLDHEVRLWN 178 (768)
Q Consensus 110 VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVa-----------fSP~dg~lLaSgS~DgtVrLWD 178 (768)
|..+-|-++.-++..+-.++.|++.+.++... ..|.+|...+..++ .|| ||..++..+.||.++.|.
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceee
Confidence 44444444667777777889999988765443 55566776655533 578 889999999999888877
Q ss_pred CCC-C----cEEEEecCCCCeEEEEE--cCC-------C--CEEEEEEC-Ce-EEEEEcCCCcc
Q 004203 179 AST-A----ECIGSRDFYRPIASIAF--HAS-------G--ELLAVASG-HK-LYIWRYNMREE 224 (768)
Q Consensus 179 l~s-g----~~i~~l~h~~~V~svaf--SPD-------G--~~LatgSd-d~-I~IWDl~t~~~ 224 (768)
+.- | .|+..++.+..-..+|| +.+ + .+++++++ ++ +++|.-...++
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 642 2 33444432221222333 322 1 14555554 33 88887665554
No 429
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=72.78 E-value=70 Score=35.00 Aligned_cols=130 Identities=13% Similarity=0.140 Sum_probs=92.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 004203 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS 187 (768)
Q Consensus 108 ~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~ 187 (768)
..-..++-+|||..-+++...+.|--.|-.+|+....--+.+.....|..-| |+..-++-+.. -|.-.|-++.+..+.
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEe
Confidence 3457889999999999999999999999999998777777777788889999 65555443322 465667666654433
Q ss_pred ---ecC-CCCeEEEEEcCCCCEEEEEECCe----------EEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEE
Q 004203 188 ---RDF-YRPIASIAFHASGELLAVASGHK----------LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252 (768)
Q Consensus 188 ---l~h-~~~V~svafSPDG~~LatgSdd~----------I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Lla 252 (768)
.+| ....+...|++.|.+-.++..+- |++|+.-.+ ...+.|+..|||...++
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG-------------~gpyGi~atpdGsvwya 205 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG-------------GGPYGICATPDGSVWYA 205 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC-------------CCCcceEECCCCcEEEE
Confidence 122 34677889999999888886432 555554322 34467788999985554
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.13 E-value=42 Score=38.90 Aligned_cols=116 Identities=10% Similarity=0.062 Sum_probs=74.6
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE----EEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK----VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~----~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s 181 (768)
-.+.|.++.||+|.+.||+--.|.+|.+++....+... .-+..+..|....|+. ..-+|..+..| +-+|....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEEch
Confidence 45689999999999999999999999999984333221 1122334577888876 45666666655 56665543
Q ss_pred CcE-EEEe-cCCCCeEEEEEcCCCCEEEEEEC--C-eEEEEEcCCCcc
Q 004203 182 AEC-IGSR-DFYRPIASIAFHASGELLAVASG--H-KLYIWRYNMREE 224 (768)
Q Consensus 182 g~~-i~~l-~h~~~V~svafSPDG~~LatgSd--d-~I~IWDl~t~~~ 224 (768)
.+. ++.. .+.-.|+-..|+++...+..++. + .+.=+.++++..
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 322 2222 35667888899998885554442 3 244444444443
No 431
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.42 E-value=0.73 Score=52.88 Aligned_cols=141 Identities=11% Similarity=0.163 Sum_probs=96.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCE-EEEEeCCCeEEEEECCCCcEEE
Q 004203 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI-IASGSLDHEVRLWNASTAECIG 186 (768)
Q Consensus 108 ~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~l-LaSgS~DgtVrLWDl~sg~~i~ 186 (768)
..-....|-+.+.-++.++-+..|..||-. ++....+. ..+....++|.- +++. ++-+-..+.+.|||+.+...+.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDk-egdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDK-EGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhcc-ccchhhhhhhcCCCeeechhhhhhHHH
Confidence 334456778877778888899999999943 44333333 345566789988 5554 4456778899999998753322
Q ss_pred -EecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEEE
Q 004203 187 -SRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 187 -~l~h~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS~ 254 (768)
.++....-.-+.|++.+..++.+. .+.+.|++..+..... ..-.|...+..++|.+.+..++..+
T Consensus 112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccceeeecCc
Confidence 122222223378999888888887 4559999988776533 3444889999999999887555433
No 432
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.18 E-value=27 Score=40.99 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=52.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEe---------CCCCeEEE---E-------Ee-cCCCCcEEEEEccCC--CCEEE
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIID---------CQTGSCLK---V-------LH-GHRRTPWVVRFHPLN--PTIIA 166 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWD---------l~tg~~l~---~-------l~-gH~g~V~sVafSP~d--g~lLa 166 (768)
.|..+..|+.|..++-.+.+|.+..+= +++|+.+. + |. ...-.+..++|||+. ...+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 578899999999999999998765543 23443221 1 11 111235668899944 46777
Q ss_pred EEeCCCeEEEEECCCCcEE
Q 004203 167 SGSLDHEVRLWNASTAECI 185 (768)
Q Consensus 167 SgS~DgtVrLWDl~sg~~i 185 (768)
.-+.|.++|+||+.....+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 7788999999999876554
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.82 E-value=27 Score=36.50 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=45.5
Q ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-------e-------cCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 004203 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-------H-------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180 (768)
Q Consensus 115 fSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-------~-------gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~ 180 (768)
+..++++|++-+.+|.+++||+.+++.+..- . .....|..+.++. +|.-+++-+ +|..+.||..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccc
Confidence 3346888999999999999999988754221 1 2345566677775 666665544 4667777766
Q ss_pred CCcEE
Q 004203 181 TAECI 185 (768)
Q Consensus 181 sg~~i 185 (768)
-+.-+
T Consensus 96 L~~W~ 100 (219)
T PF07569_consen 96 LGCWI 100 (219)
T ss_pred cceeE
Confidence 54433
No 434
>PRK13684 Ycf48-like protein; Provisional
Probab=70.58 E-value=1.1e+02 Score=33.94 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=69.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC----CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 004203 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s 181 (768)
-...++++.+.++++.++++ ..|.+++=..+.|+.-.....+ ...+..+.+.+ ++.+++ ++.+|.|. .....
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~-~S~d~ 288 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLL-VSKDG 288 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEE-EeCCC
Confidence 34678999999999877654 5577654344555443322222 23467788988 666555 44567554 44455
Q ss_pred CcEEEEec----CCCCeEEEEEcCCCCEEEEEECCeEEEEEc
Q 004203 182 AECIGSRD----FYRPIASIAFHASGELLAVASGHKLYIWRY 219 (768)
Q Consensus 182 g~~i~~l~----h~~~V~svafSPDG~~LatgSdd~I~IWDl 219 (768)
|+...... .....+.+.|..+++.+++|..+.|-.|+-
T Consensus 289 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 289 GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 55433322 234678888888888888888888777753
No 435
>PHA03098 kelch-like protein; Provisional
Probab=70.30 E-value=1.4e+02 Score=34.93 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=63.8
Q ss_pred eEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCeEEE--EEecCCCCcEEEEEc
Q 004203 92 SLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLK--VLHGHRRTPWVVRFH 158 (768)
Q Consensus 92 sIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~--~l~gH~g~V~sVafS 158 (768)
.+..||..+.+ +.........+.+ +++.++.||.+ ..+.+||..+.+-.. .+....... +++.
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~- 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN- 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-
Confidence 46677776552 2212222222322 57777777764 357888987754221 111111111 1222
Q ss_pred cCCCCEEEEEeCC------CeEEEEECCCCcEEEEecC--CCCeEEEEEcCCCCEEEEEECC---------eEEEEEcCC
Q 004203 159 PLNPTIIASGSLD------HEVRLWNASTAECIGSRDF--YRPIASIAFHASGELLAVASGH---------KLYIWRYNM 221 (768)
Q Consensus 159 P~dg~lLaSgS~D------gtVrLWDl~sg~~i~~l~h--~~~V~svafSPDG~~LatgSdd---------~I~IWDl~t 221 (768)
- ++.+++.|+.+ ..+..||..+.+-...-.. .....++ ..-++++.+.|+.+ .+.+||..+
T Consensus 388 ~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 2 56777777632 3688999887654332111 1111122 22356666666521 278888877
Q ss_pred Ccc
Q 004203 222 REE 224 (768)
Q Consensus 222 ~~~ 224 (768)
.+.
T Consensus 466 ~~W 468 (534)
T PHA03098 466 NKW 468 (534)
T ss_pred Cce
Confidence 654
No 436
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=70.28 E-value=16 Score=28.62 Aligned_cols=31 Identities=29% Similarity=0.436 Sum_probs=26.2
Q ss_pred CCeEEEEECC-CC--CEEEEEeCCCeEEEEeCCC
Q 004203 108 RSTIAAAFSP-DG--KTLASTHGDHTVKIIDCQT 138 (768)
Q Consensus 108 ~~VtslafSP-DG--~~LaSgS~DgtVrVWDl~t 138 (768)
+.|.++.||| .+ .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998 44 5888888889999999985
No 437
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.13 E-value=0.74 Score=52.81 Aligned_cols=136 Identities=13% Similarity=0.111 Sum_probs=94.5
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCCC--CCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCeEEEEEecCCCC
Q 004203 75 EAGRDARRGLASWVEAESLHHLRPKYCPL--SPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRT 151 (768)
Q Consensus 75 ~a~~d~g~~LvSgs~DgsIrlWd~~t~~L--~gH~~~VtslafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~g~ 151 (768)
......+..++.+..+..+..+|-..... ...++...+++|..+|..++ .+-..+.+++||+.+......-.+-+..
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s 119 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSS 119 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcch
Confidence 33334455577777777888888765522 23456678899999887665 4556789999999764322111121222
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCeEEEEEcCCCCEEEEEEC
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG 211 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-h~~~V~svafSPDG~~LatgSd 211 (768)
-.-+.|++ ....++.+...+.+.|++..+...+...+ |...+.+++|.+.+..+...++
T Consensus 120 ~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 120 KSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred HHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcH
Confidence 22268999 88888888889999999998877766676 8899999999998876655443
No 438
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=70.00 E-value=2.1e+02 Score=33.50 Aligned_cols=132 Identities=15% Similarity=0.065 Sum_probs=68.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC---cEEEEEc
Q 004203 82 RGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT---PWVVRFH 158 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~~L~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~---V~sVafS 158 (768)
...+.-..+|.|+ |.........+. +.+.++|.+++..+ ..++.+|+. |+.+..+.-..+. -..+.+-
T Consensus 128 ~~~~~iD~~G~Vr-w~~~~~~~~~~~-----~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l 198 (477)
T PF05935_consen 128 SYTYLIDNNGDVR-WYLPLDSGSDNS-----FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDEL 198 (477)
T ss_dssp EEEEEEETTS-EE-EEE-GGGT--SS-----EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-
T ss_pred ceEEEECCCccEE-EEEccCccccce-----eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEEC
Confidence 3444445566654 444333222222 67788998887665 789999985 6666555433322 3457778
Q ss_pred cCCCCEEEEEeC-------------CCeEEEEECCCCcEEEEec---CC-------------------------CCeEEE
Q 004203 159 PLNPTIIASGSL-------------DHEVRLWNASTAECIGSRD---FY-------------------------RPIASI 197 (768)
Q Consensus 159 P~dg~lLaSgS~-------------DgtVrLWDl~sg~~i~~l~---h~-------------------------~~V~sv 197 (768)
| +|++|+.+.. .-.|..+| .+|+.+..+. |- --++++
T Consensus 199 ~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi 276 (477)
T PF05935_consen 199 P-NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSI 276 (477)
T ss_dssp T-TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEE
T ss_pred C-CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCcc
Confidence 8 8888887771 11466777 7887766642 10 136789
Q ss_pred EEcCCCCEEEEEEC--CeEEEEEcCCCcc
Q 004203 198 AFHASGELLAVASG--HKLYIWRYNMREE 224 (768)
Q Consensus 198 afSPDG~~LatgSd--d~I~IWDl~t~~~ 224 (768)
.+.+....|++++. +.|..+|.++++.
T Consensus 277 ~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 277 DYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp EEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred EEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 99995555555554 3488888777654
No 439
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=69.83 E-value=2.3e+02 Score=33.20 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=44.9
Q ss_pred EEEEE---eCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC----
Q 004203 121 TLAST---HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP---- 193 (768)
Q Consensus 121 ~LaSg---S~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~---- 193 (768)
+|+.. .......++|. .|.....+.........+..-+ +|.+++... ..++.+|+. |+.+........
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~-nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~ 191 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLP-NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDF 191 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-T-TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcC-CCCEEEecC--CceEEEcCC-CCEEEeeecCCccccc
Confidence 45554 34677888885 4666666653332222255667 777776554 779999985 666665544443
Q ss_pred eEEEEEcCCCCEEEEEE
Q 004203 194 IASIAFHASGELLAVAS 210 (768)
Q Consensus 194 V~svafSPDG~~LatgS 210 (768)
-..+.+.|+|.+|+.+.
T Consensus 192 HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 192 HHDIDELPNGNLLILAS 208 (477)
T ss_dssp -S-EEE-TTS-EEEEEE
T ss_pred ccccEECCCCCEEEEEe
Confidence 35678889999888776
No 440
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.37 E-value=50 Score=36.31 Aligned_cols=109 Identities=10% Similarity=0.208 Sum_probs=71.9
Q ss_pred ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCC
Q 004203 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY--RPIASIAFHASGELLAVASG-HKLYIWRYNMR 222 (768)
Q Consensus 146 ~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~--~~V~svafSPDG~~LatgSd-d~I~IWDl~t~ 222 (768)
.|-...+.+++|+| +.+.|++......-.+|=...|+.++++... .....+.|.-+|++.++--. ..++++.++..
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 44555699999999 6776777666666667777789999886533 34566788877776655443 33777777655
Q ss_pred ccccCCe----Ee--ecC-CCCeEEEEEccCCCeEEEEEe
Q 004203 223 EETSSPR----IV--LRT-RRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 223 ~~~~~~~----~l--~~h-~~~V~sVaFSPDG~~LlaS~s 255 (768)
....... .+ ..+ +.....++|+|....+.+.-+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 3321111 11 112 567889999999887776654
No 441
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=68.69 E-value=18 Score=42.64 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=46.0
Q ss_pred CCCCEEEEEeCCCeEEEEeCCC----CeEEE-EEecC---------------------CCCcEEEEEcc---CCCCEEEE
Q 004203 117 PDGKTLASTHGDHTVKIIDCQT----GSCLK-VLHGH---------------------RRTPWVVRFHP---LNPTIIAS 167 (768)
Q Consensus 117 PDG~~LaSgS~DgtVrVWDl~t----g~~l~-~l~gH---------------------~g~V~sVafSP---~dg~lLaS 167 (768)
++...|+.+..||.+....... +.... .+... ...+..+.++. .+..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4677888889999998887764 22221 11111 12234444444 25679999
Q ss_pred EeCCCeEEEEECCCCcEEEEec
Q 004203 168 GSLDHEVRLWNASTAECIGSRD 189 (768)
Q Consensus 168 gS~DgtVrLWDl~sg~~i~~l~ 189 (768)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977754
No 442
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=68.18 E-value=1.8e+02 Score=33.29 Aligned_cols=107 Identities=10% Similarity=0.037 Sum_probs=66.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeE-----EEEEec--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 004203 106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-----LKVLHG--HRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178 (768)
Q Consensus 106 H~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~-----l~~l~g--H~g~V~sVafSP~dg~lLaSgS~DgtVrLWD 178 (768)
....++++.|.++|..++.+ .+|.+.. ....++. ...+.- -...+..+.|.+ ++..+++ +.+|.+...
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~-G~~G~v~~s- 353 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAA-GGSGILLRS- 353 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEE-ECCCcEEEe-
Confidence 35568999999998887755 5566544 3344431 222221 123478888887 6665555 556755554
Q ss_pred CCCCcEEEEe----cCCCCeEEEEEcCCCCEEEEEECCeEEEE
Q 004203 179 ASTAECIGSR----DFYRPIASIAFHASGELLAVASGHKLYIW 217 (768)
Q Consensus 179 l~sg~~i~~l----~h~~~V~svafSPDG~~LatgSdd~I~IW 217 (768)
...|+..... ......+.+.|.++++.+++|.++.|..|
T Consensus 354 ~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 354 TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 4455543332 23456789999998998888888776554
No 443
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.23 E-value=1.2e+02 Score=33.05 Aligned_cols=114 Identities=11% Similarity=0.182 Sum_probs=68.2
Q ss_pred CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe------CCCeEEEEECCCCcEEEEec-----CCCCeEEE
Q 004203 129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS------LDHEVRLWNASTAECIGSRD-----FYRPIASI 197 (768)
Q Consensus 129 gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS------~DgtVrLWDl~sg~~i~~l~-----h~~~V~sv 197 (768)
..|++||..+.+-...-.+-.+.|..+.|.. +.++++.|. ....+-.||+.+..-...-. ..++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 4699999887765444445667899999986 777777765 34578899998765422222 34788888
Q ss_pred EEcC-CCC-EEEEEE--CCe--EEEEEcCCCccccCCeEeecCCCCeEEEEEcc
Q 004203 198 AFHA-SGE-LLAVAS--GHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHP 245 (768)
Q Consensus 198 afSP-DG~-~LatgS--dd~--I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSP 245 (768)
.+.. |+. +.+.|. ++. |..||-.+-.... .........|+.+.+-|
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~--~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG--SDILGSGTTIRGLQVLP 146 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEecc--ccccCCCCEEEEEEEEe
Confidence 7743 443 343443 222 7788655443322 11222244566665443
No 444
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=66.85 E-value=3.6e+02 Score=34.39 Aligned_cols=147 Identities=15% Similarity=0.187 Sum_probs=84.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-ecCCCCcEEEEEccC--CCC---EEEEEeCCCeEEEE-EC
Q 004203 107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPL--NPT---IIASGSLDHEVRLW-NA 179 (768)
Q Consensus 107 ~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~g~V~sVafSP~--dg~---lLaSgS~DgtVrLW-Dl 179 (768)
.+.++....+.+...++.++.++.+...++..+...... +.-...|.|+.++|. +.+ +++.|..+..+.+. -+
T Consensus 487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 487 PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 444555555666778888888888888887766522111 122457889999873 333 78888887755444 33
Q ss_pred CCCcEEEEe--c---CCCCeEEEEEcCCCCEEEEEECCe-EE--EEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEE
Q 004203 180 STAECIGSR--D---FYRPIASIAFHASGELLAVASGHK-LY--IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL 251 (768)
Q Consensus 180 ~sg~~i~~l--~---h~~~V~svafSPDG~~LatgSdd~-I~--IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~Ll 251 (768)
.+...+... . .+..|--.+|--|+.+|.++.+++ +. +.|..++.... ..+..-...++.--.|+-.++.-+
T Consensus 567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd-~Kk~~lGt~P~~Lr~f~sk~~t~v 645 (1096)
T KOG1897|consen 567 PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSD-RKKVTLGTQPISLRTFSSKSRTAV 645 (1096)
T ss_pred CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcc-ccccccCCCCcEEEEEeeCCceEE
Confidence 333333222 1 234555666777788888888655 44 44555554332 111122335555556666665544
Q ss_pred EEE
Q 004203 252 LTA 254 (768)
Q Consensus 252 aS~ 254 (768)
+..
T Consensus 646 fa~ 648 (1096)
T KOG1897|consen 646 FAL 648 (1096)
T ss_pred EEe
Confidence 443
No 445
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=66.31 E-value=2.1e+02 Score=31.47 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=51.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcE---EEEEccC-CCCEEEEEeCCCeEEEEECC
Q 004203 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW---VVRFHPL-NPTIIASGSLDHEVRLWNAS 180 (768)
Q Consensus 110 VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~---sVafSP~-dg~lLaSgS~DgtVrLWDl~ 180 (768)
|+++....+|.+|+|.-.-..|.+.|-++|+.+..+.|..+.-. ...|+-+ +-+++-.+..+++|.|+|=.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 78899999999999999999999999999999999977622111 1123322 33344345667889898863
No 446
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.27 E-value=69 Score=33.77 Aligned_cols=163 Identities=10% Similarity=0.071 Sum_probs=87.4
Q ss_pred CeEEEEeCCCCCCC--C--CCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004203 91 ESLHHLRPKYCPLS--P--PPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII 165 (768)
Q Consensus 91 gsIrlWd~~t~~L~--g--H~~~VtslafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lL 165 (768)
..|+.||+.+++.. . ....+.+--...-|.+++.-. .++.-.++|.++-+++..+.- .+.=+.++- |++-|
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeGWgLt~---d~~~L 143 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEGWGLTS---DDKNL 143 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcceeeec---CCcce
Confidence 35899999866311 0 012222222222345555444 488889999999888777653 334455543 44445
Q ss_pred EEEeCCCeEEEEECCCCcEEEEec---CC---CCeEEEEEcCCCCEEE-EEECCeEEEEEcCCCcccc---------CCe
Q 004203 166 ASGSLDHEVRLWNASTAECIGSRD---FY---RPIASIAFHASGELLA-VASGHKLYIWRYNMREETS---------SPR 229 (768)
Q Consensus 166 aSgS~DgtVrLWDl~sg~~i~~l~---h~---~~V~svafSPDG~~La-tgSdd~I~IWDl~t~~~~~---------~~~ 229 (768)
..++...+++.-|-++-..+.+.. .. ..++.+.|- ||...| ++-.+.|...|.++++... ...
T Consensus 144 imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~ 222 (262)
T COG3823 144 IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELN 222 (262)
T ss_pred EeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcC
Confidence 555555577777766544333321 11 122334443 343332 2224445555555554321 000
Q ss_pred EeecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004203 230 IVLRTRRSLRAVHFHPHAAPLLLTAEVND 258 (768)
Q Consensus 230 ~l~~h~~~V~sVaFSPDG~~LlaS~svwd 258 (768)
....+..-.+.+++.|++..++.++..|.
T Consensus 223 ~~~~~~nvlNGIA~~~~~~r~~iTGK~wp 251 (262)
T COG3823 223 LDKSNDNVLNGIAHDPQQDRFLITGKLWP 251 (262)
T ss_pred ccccccccccceeecCcCCeEEEecCcCc
Confidence 11223456789999999988999988764
No 447
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.06 E-value=98 Score=33.23 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=45.3
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEE
Q 004203 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168 (768)
Q Consensus 112 slafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSg 168 (768)
.++..-+|++.+++-+-++|...|..+|+.+..++-.+..|++++|--.+-+++++.
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 344456788888888899999999999999999998899999999954233455543
No 448
>PHA02713 hypothetical protein; Provisional
Probab=64.01 E-value=2.8e+02 Score=33.06 Aligned_cols=124 Identities=7% Similarity=-0.064 Sum_probs=62.5
Q ss_pred eEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCeEE--EEEecCCCCcEEEEEc
Q 004203 92 SLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDH-----TVKIIDCQTGSCL--KVLHGHRRTPWVVRFH 158 (768)
Q Consensus 92 sIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~Dg-----tVrVWDl~tg~~l--~~l~gH~g~V~sVafS 158 (768)
.+..+|..+.+ +.........+. -+|+..+.||.++ +|..||..+.+-. ..+.........+..
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~- 397 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL- 397 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE-
Confidence 47778876652 111111222222 2677777787653 4889998775421 122111111112222
Q ss_pred cCCCCEEEEEeCCC-----------------------eEEEEECCCCcEEEE--ecCCCCeEEEEEcCCCCEEEEEECC-
Q 004203 159 PLNPTIIASGSLDH-----------------------EVRLWNASTAECIGS--RDFYRPIASIAFHASGELLAVASGH- 212 (768)
Q Consensus 159 P~dg~lLaSgS~Dg-----------------------tVrLWDl~sg~~i~~--l~h~~~V~svafSPDG~~LatgSdd- 212 (768)
++.+.+.|+.++ ++..||.++.+-... +.....-.+++ .-+|++.+.|+.+
T Consensus 398 --~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~ 474 (557)
T PHA02713 398 --DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKD 474 (557)
T ss_pred --CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCC
Confidence 678888777652 477788877654322 11111111222 2246665666521
Q ss_pred ------eEEEEEcCC
Q 004203 213 ------KLYIWRYNM 221 (768)
Q Consensus 213 ------~I~IWDl~t 221 (768)
.+..||..+
T Consensus 475 ~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 475 EKNVKTCIFRYNTNT 489 (557)
T ss_pred CCccceeEEEecCCC
Confidence 267888877
No 449
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=63.75 E-value=90 Score=34.77 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=74.0
Q ss_pred EEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC-
Q 004203 133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG- 211 (768)
Q Consensus 133 VWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd- 211 (768)
++|+.+++.+.. |..- ..+..|+ ++++.++-+..|.|.-+|.++|+........+....++|. |.+++++-.
T Consensus 189 vidv~s~evl~~--GLsm-PhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk 261 (335)
T TIGR03032 189 VIDIPSGEVVAS--GLSM-PHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSK 261 (335)
T ss_pred EEEeCCCCEEEc--CccC-CcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEecc
Confidence 467777765422 2221 3345776 4888888889999999999989877777777888889998 888877631
Q ss_pred --------------------CeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCC
Q 004203 212 --------------------HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA 248 (768)
Q Consensus 212 --------------------d~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~ 248 (768)
-+|.+.|++++.... ...+.+.-..+.+|++-|.-+
T Consensus 262 ~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~-~l~feg~v~EifdV~vLPg~r 317 (335)
T TIGR03032 262 LRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVH-WLRFEGVIEEIYDVAVLPGVR 317 (335)
T ss_pred ccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEE-EEEeCCceeEEEEEEEecCCC
Confidence 126777887777544 334444556677777777644
No 450
>PHA02713 hypothetical protein; Provisional
Probab=63.00 E-value=1.1e+02 Score=36.48 Aligned_cols=127 Identities=9% Similarity=-0.046 Sum_probs=66.6
Q ss_pred eEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC-----------------------CeEEEEeCCCCeEE
Q 004203 92 SLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----------------------HTVKIIDCQTGSCL 142 (768)
Q Consensus 92 sIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~D-----------------------gtVrVWDl~tg~~l 142 (768)
++..||..+.+ +.........+.+ +|+..+.|+.+ ..|..||.++.+-.
T Consensus 368 sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~ 445 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE 445 (557)
T ss_pred eEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe
Confidence 48889987652 2222222222222 57777777754 25788888776422
Q ss_pred --EEEecCCCCcEEEEEccCCCCEEEEEeCC------CeEEEEECCC-CcEEEE--ecCCCCeEEEEEcCCCCEEEEEEC
Q 004203 143 --KVLHGHRRTPWVVRFHPLNPTIIASGSLD------HEVRLWNAST-AECIGS--RDFYRPIASIAFHASGELLAVASG 211 (768)
Q Consensus 143 --~~l~gH~g~V~sVafSP~dg~lLaSgS~D------gtVrLWDl~s-g~~i~~--l~h~~~V~svafSPDG~~LatgSd 211 (768)
..+.........+.+ ++++.+.|+.+ ..+..||.++ .+-... +........++.. +|++.++|+.
T Consensus 446 ~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~ 521 (557)
T PHA02713 446 TLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLHCY 521 (557)
T ss_pred ecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEeee
Confidence 222111111111222 56777777654 2467899887 443322 2222222222222 6777777774
Q ss_pred Ce---EEEEEcCCCcc
Q 004203 212 HK---LYIWRYNMREE 224 (768)
Q Consensus 212 d~---I~IWDl~t~~~ 224 (768)
++ +..||..+.+.
T Consensus 522 ~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 522 ESYMLQDTFNVYTYEW 537 (557)
T ss_pred cceeehhhcCcccccc
Confidence 33 77888777664
No 451
>PHA03098 kelch-like protein; Provisional
Probab=62.74 E-value=2.1e+02 Score=33.42 Aligned_cols=128 Identities=14% Similarity=0.106 Sum_probs=63.7
Q ss_pred eEEEEeCCCCCCC-----CCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeCCCCeEEEE--EecCCCCcEEEEEc
Q 004203 92 SLHHLRPKYCPLS-----PPPRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQTGSCLKV--LHGHRRTPWVVRFH 158 (768)
Q Consensus 92 sIrlWd~~t~~L~-----gH~~~VtslafSPDG~~LaSgS~D------gtVrVWDl~tg~~l~~--l~gH~g~V~sVafS 158 (768)
.+..||..+.+.. .+...-.+++. -+++..+.|+.+ ..+.+||..+.+-... +....... ++..
T Consensus 359 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~- 435 (534)
T PHA03098 359 TVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY- 435 (534)
T ss_pred eEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-
Confidence 4777887765211 11111122222 256666666632 4688999887642221 11111111 2222
Q ss_pred cCCCCEEEEEeCC--------CeEEEEECCCCcEEEEe--cCCCCeEEEEEcCCCCEEEEEECC------eEEEEEcCCC
Q 004203 159 PLNPTIIASGSLD--------HEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASGH------KLYIWRYNMR 222 (768)
Q Consensus 159 P~dg~lLaSgS~D--------gtVrLWDl~sg~~i~~l--~h~~~V~svafSPDG~~LatgSdd------~I~IWDl~t~ 222 (768)
- ++.+++.|+.+ ..+.+||..+++-...- ........++ .-++++++.|+.+ .+.+||..+.
T Consensus 436 ~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 436 H-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred E-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2 56777777643 23889999876544331 1111111222 1266666666632 3788887766
Q ss_pred cc
Q 004203 223 EE 224 (768)
Q Consensus 223 ~~ 224 (768)
.-
T Consensus 514 ~W 515 (534)
T PHA03098 514 TW 515 (534)
T ss_pred EE
Confidence 43
No 452
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=61.85 E-value=2.4e+02 Score=30.67 Aligned_cols=168 Identities=13% Similarity=0.131 Sum_probs=83.8
Q ss_pred CCeEEEEeCCCCCCCCCCCCeEEEEECCC-C----CEEEEE-eCCCeEEEEeCCCCeEEEEEecCCC-------------
Q 004203 90 AESLHHLRPKYCPLSPPPRSTIAAAFSPD-G----KTLAST-HGDHTVKIIDCQTGSCLKVLHGHRR------------- 150 (768)
Q Consensus 90 DgsIrlWd~~t~~L~gH~~~VtslafSPD-G----~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~g------------- 150 (768)
++.++.+.+....+. ....+..+.+... + .+++.+ +..+-|.|+|+.+++..+.+..+..
T Consensus 44 ~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~ 122 (287)
T PF03022_consen 44 NQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGE 122 (287)
T ss_dssp TCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTE
T ss_pred CcEEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCc
Confidence 444555554433333 4556788888772 2 233333 3356899999999987666643321
Q ss_pred ------CcEEEEEccC--CCCEEEEEeCCCeEEEEECCC-----Cc---------EEEEecCC-CCeEEEEEcCCCCEEE
Q 004203 151 ------TPWVVRFHPL--NPTIIASGSLDHEVRLWNAST-----AE---------CIGSRDFY-RPIASIAFHASGELLA 207 (768)
Q Consensus 151 ------~V~sVafSP~--dg~lLaSgS~DgtVrLWDl~s-----g~---------~i~~l~h~-~~V~svafSPDG~~La 207 (768)
.+..++.+|. +++.|+.....+ -++|-+.+ .. .++.++.. .....++++++|.+.+
T Consensus 123 ~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~ 201 (287)
T PF03022_consen 123 SFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYF 201 (287)
T ss_dssp EEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEE
T ss_pred eEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEE
Confidence 1333343331 223444443322 12222221 11 12223332 3566788899887665
Q ss_pred EEE-CCeEEEEEcCCCccccCCeEeecC---CCCeEEEEEcc--CCCeEEEEEeeCCc
Q 004203 208 VAS-GHKLYIWRYNMREETSSPRIVLRT---RRSLRAVHFHP--HAAPLLLTAEVNDL 259 (768)
Q Consensus 208 tgS-dd~I~IWDl~t~~~~~~~~~l~~h---~~~V~sVaFSP--DG~~LlaS~svwdl 259 (768)
+-- .+.|..||..+.-.......+... -..+..+.+.+ +|...+.+.....+
T Consensus 202 ~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~ 259 (287)
T PF03022_consen 202 TDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRF 259 (287)
T ss_dssp EECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SS
T ss_pred ecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHh
Confidence 554 455999998874322211122222 35789999999 89877777665444
No 453
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=61.54 E-value=70 Score=35.58 Aligned_cols=72 Identities=21% Similarity=0.088 Sum_probs=47.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC--CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Q 004203 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR--RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR 192 (768)
Q Consensus 118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~--g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~ 192 (768)
|| .++.+..||.|.-.|.++++.+.....-. ..+..-.+.. +|+ ++.++.++.++.+|.++|+.+.......
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence 44 44556888899999999998665433221 2222223333 455 7778888899999999999888766544
No 454
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=61.32 E-value=1.7e+02 Score=35.10 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=74.0
Q ss_pred CeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeCCCCeEEE--EEecCCCCcEEEEE
Q 004203 91 ESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQTGSCLK--VLHGHRRTPWVVRF 157 (768)
Q Consensus 91 gsIrlWd~~t~~-----L~gH~~~VtslafSPDG~~LaSgS~D------gtVrVWDl~tg~~l~--~l~gH~g~V~sVaf 157 (768)
..++.+|..+.. -..+...-.+++.. ++...++|+.| .++.+||..+.+-.. .+...........
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~- 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV- 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE-
Confidence 467888887662 11233344455555 46777788888 468889988766222 1222222222222
Q ss_pred ccCCCCEEEEEeCCC-----eEEEEECCCCcEEEEecCCCCeEEEEE-cCCCCEEEEEE-C------CeEEEEEcCCCcc
Q 004203 158 HPLNPTIIASGSLDH-----EVRLWNASTAECIGSRDFYRPIASIAF-HASGELLAVAS-G------HKLYIWRYNMREE 224 (768)
Q Consensus 158 SP~dg~lLaSgS~Dg-----tVrLWDl~sg~~i~~l~h~~~V~svaf-SPDG~~LatgS-d------d~I~IWDl~t~~~ 224 (768)
-++.+.+.|+.|| +|-.||..+.+....-.........+- .-+|++.++|+ + +.+..||..+...
T Consensus 379 --l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 379 --LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred --ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 2788999999997 477788776543322222222222222 22566666665 2 2288999888765
Q ss_pred cc
Q 004203 225 TS 226 (768)
Q Consensus 225 ~~ 226 (768)
..
T Consensus 457 ~~ 458 (571)
T KOG4441|consen 457 TL 458 (571)
T ss_pred ee
Confidence 33
No 455
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=61.21 E-value=1.7e+02 Score=32.61 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=69.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCC------CC-eEEEEEec-----CCCCcEEEEEccCCCC------------E
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQ------TG-SCLKVLHG-----HRRTPWVVRFHPLNPT------------I 164 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~------tg-~~l~~l~g-----H~g~V~sVafSP~dg~------------l 164 (768)
.-..|+|+|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 35789999999888888888999999986 12 22333332 123566777765 222 3
Q ss_pred EEEEeCCCeEEEEECCCCcE-----EEEecC---CCCeEEEEEcCC--CCEEEEEE--CCeEEEEEcCCC
Q 004203 165 IASGSLDHEVRLWNASTAEC-----IGSRDF---YRPIASIAFHAS--GELLAVAS--GHKLYIWRYNMR 222 (768)
Q Consensus 165 LaSgS~DgtVrLWDl~sg~~-----i~~l~h---~~~V~svafSPD--G~~LatgS--dd~I~IWDl~t~ 222 (768)
++.+++||+|.-|.-.-+.. ...+.. ...+..+++... +.+|+.+. .++|.++|-.-.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 67788999999998543222 112221 223445666543 56666665 455888875433
No 456
>PRK13615 lipoprotein LpqB; Provisional
Probab=61.13 E-value=2.2e+02 Score=34.22 Aligned_cols=139 Identities=13% Similarity=0.033 Sum_probs=83.7
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEE-
Q 004203 110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGS- 187 (768)
Q Consensus 110 VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s-g~~i~~- 187 (768)
..+++.++|++.++....++.++++... +.....+. ...+..-.|.+ ++ .+-+...+...++..... |+....
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~-~g-~vWtv~~g~~~~l~~~~~~G~~~~v~ 410 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDA-QG-YVWSTPASDPRGLVAWGPDGVGHPVA 410 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcC-CC-CEEEEeCCCceEEEEecCCCceEEee
Confidence 3788999999999988888888888765 23233333 23355567777 55 344444333455544432 443222
Q ss_pred --ecCCCCeEEEEEcCCCCEEEEEEC----CeEEEEEcCC-Cc---cc-cCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 188 --RDFYRPIASIAFHASGELLAVASG----HKLYIWRYNM-RE---ET-SSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 188 --l~h~~~V~svafSPDG~~LatgSd----d~I~IWDl~t-~~---~~-~~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
+...+.|..+..++||..++.-.+ ++|++--+.. +. .. ..+..+......+.++.|..++...+.+
T Consensus 411 v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 411 VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 224468999999999998776543 4455543322 22 11 1222232233488999999999855554
No 457
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=60.89 E-value=2.5e+02 Score=30.52 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=79.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-----CC
Q 004203 80 ARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-----RT 151 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~L~---gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-----g~ 151 (768)
++...++| .++...+||..+-+.. ...+.=..++ .||+.|+.......++.+|.++.+....+.-.. ..
T Consensus 100 d~l~qLTW-k~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 100 DKLYQLTW-KEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp TEEEEEES-SSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred CEEEEEEe-cCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 33444455 4567888888754211 1122334555 468888888888899999999887776664321 24
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----------C-----CCCeEEEEEcCCCCEEEEEEC
Q 004203 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----------F-----YRPIASIAFHASGELLAVASG 211 (768)
Q Consensus 152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~-----------h-----~~~V~svafSPDG~~LatgSd 211 (768)
++-+.|. +|.+.|-.=....|...|..+|+....+. . ....+.+||+|+...|.+.+.
T Consensus 177 LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 177 LNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5667775 57777777677788888999999887652 0 235789999998887766663
No 458
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=60.48 E-value=1.2e+02 Score=29.77 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=56.1
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCC--------cEEEEecCCCCeEEEEEcC-----CCCEEEEEECCeEEEEEcCCC
Q 004203 156 RFHPLNPTIIASGSLDHEVRLWNASTA--------ECIGSRDFYRPIASIAFHA-----SGELLAVASGHKLYIWRYNMR 222 (768)
Q Consensus 156 afSP~dg~lLaSgS~DgtVrLWDl~sg--------~~i~~l~h~~~V~svafSP-----DG~~LatgSdd~I~IWDl~t~ 222 (768)
+|.. ....|+.++.-+.|.|.+.... ..+..+.....|++++-.+ +...|+.|+...+..||+...
T Consensus 5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 4544 3446677777778888876532 3455667777888876544 345899999999999999876
Q ss_pred ccccCCeEeecCCCCeEEEEEc
Q 004203 223 EETSSPRIVLRTRRSLRAVHFH 244 (768)
Q Consensus 223 ~~~~~~~~l~~h~~~V~sVaFS 244 (768)
...- ...-...|+++.+-
T Consensus 84 ~d~F----yke~~DGvn~i~~g 101 (136)
T PF14781_consen 84 SDLF----YKEVPDGVNAIVIG 101 (136)
T ss_pred chhh----hhhCccceeEEEEE
Confidence 5422 23344667777764
No 459
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=60.40 E-value=89 Score=36.82 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=67.2
Q ss_pred EEEECCCCC-------EEEEEeCCCeEEEEeCCC-CeEEEEE--ecC--CCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 004203 112 AAAFSPDGK-------TLASTHGDHTVKIIDCQT-GSCLKVL--HGH--RRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179 (768)
Q Consensus 112 slafSPDG~-------~LaSgS~DgtVrVWDl~t-g~~l~~l--~gH--~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl 179 (768)
-+.|.|+.+ .-+.|-.+..|...|.+- |..+... +.. .....+..- . ...++|.++..|.|+|||-
T Consensus 513 vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~t-T-esGyIa~as~kGDirLyDR 590 (776)
T COG5167 513 VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMT-T-ESGYIAAASRKGDIRLYDR 590 (776)
T ss_pred eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccccccccc-c-cCceEEEecCCCceeeehh
Confidence 566777432 123455566677777543 3222221 111 111222221 2 4568999999999999995
Q ss_pred CCCcEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC
Q 004203 180 STAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMR 222 (768)
Q Consensus 180 ~sg~~i~~l-~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~ 222 (768)
-.......+ +....|..+..+.+|++|++.+...+.+.|++-.
T Consensus 591 ig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik 634 (776)
T COG5167 591 IGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIK 634 (776)
T ss_pred hcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecccc
Confidence 432222222 3566888899999999999999999999988643
No 460
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=60.00 E-value=32 Score=25.25 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=26.1
Q ss_pred CCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEE
Q 004203 161 NPT-IIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAF 199 (768)
Q Consensus 161 dg~-lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svaf 199 (768)
+++ ++++...+++|.++|..+++.+..+.....-..++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 445 444455678999999999888877665444444544
No 461
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=59.86 E-value=52 Score=38.14 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=69.4
Q ss_pred CCCEEEEEeCCCeEEEE-eCCC-Ce----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Q 004203 118 DGKTLASTHGDHTVKII-DCQT-GS----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY 191 (768)
Q Consensus 118 DG~~LaSgS~DgtVrVW-Dl~t-g~----~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~ 191 (768)
.|.-|..++.||.|.-| |++. +. .++.++-....+..+.-.. +.+-+++-+..|++.++.-...+.+-.-...
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~ 357 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAY 357 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhh
Confidence 45667888999999988 4433 22 2233333333444333333 5566777888888888876555443332233
Q ss_pred CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004203 192 RPIASIAFHASGELLAVASGHKLYIWRYNMRE 223 (768)
Q Consensus 192 ~~V~svafSPDG~~LatgSdd~I~IWDl~t~~ 223 (768)
....-++++|.+.+|++-..++|+++.+++..
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cCcceeeeCcccchheeecCCceEEEEecCCC
Confidence 36677899999999999888999999987764
No 462
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=59.83 E-value=3.1e+02 Score=33.99 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=53.8
Q ss_pred cceeEEEeccC--ccceEEeecccccccceeeEEcCceeeeeEEEEEEEEecCcEEEEeecCCCCceeeeEecccCCCce
Q 004203 649 HCLTSIQFSPT--SENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGL 726 (768)
Q Consensus 649 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (768)
+.+.--+|.+. .+.+|+--=.++..|+| -.....+.+|- +|+-++++..-+ ...-|-+|+.|..|.-+ =+
T Consensus 542 ~s~~g~~~~~~~~~~~~l~vTT~~~~~L~~----~~~L~~~~~t~-~iF~l~~~~~~~--~~~~~ri~~~~~ipel~-~v 613 (717)
T PF08728_consen 542 DSPNGYKLKSYSSSDDFLLVTTSKKLYLLR----ADPLICNSSTK-RIFPLSIPFNCE--SKSSNRINMVHHIPELS-CV 613 (717)
T ss_pred cCCCcceecccCCCccEEEEEeccEEEEEc----CCCeeeeecch-hccCcccccccc--ccccceEEEEEecCccc-EE
Confidence 45555667765 44445544555665654 23445555555 777777766555 33448999999999875 46
Q ss_pred eeeeccceEEEEEe
Q 004203 727 VYGTKEGKLRILQF 740 (768)
Q Consensus 727 ~~~~~~~~~~~~~~ 740 (768)
|=++-.|++-|+|.
T Consensus 614 v~asq~G~v~i~rL 627 (717)
T PF08728_consen 614 VVASQQGLVSILRL 627 (717)
T ss_pred EEEcccCeEEEEEE
Confidence 77899999655554
No 463
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=59.74 E-value=1.1e+02 Score=35.23 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=57.8
Q ss_pred EEEECCCCCEEEEEeCCCeEEE---EeCC-----CCeEEEEEec---C--CCCcEEEEEccC----------CCCEEEEE
Q 004203 112 AAAFSPDGKTLASTHGDHTVKI---IDCQ-----TGSCLKVLHG---H--RRTPWVVRFHPL----------NPTIIASG 168 (768)
Q Consensus 112 slafSPDG~~LaSgS~DgtVrV---WDl~-----tg~~l~~l~g---H--~g~V~sVafSP~----------dg~lLaSg 168 (768)
.++.+|+++.|+.+..+..+.+ |+.. .+.......+ + ...|+++.|-|. |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999988776666 5431 1122222211 1 145777666442 45788999
Q ss_pred eCCCeEEEEECCCCcEEE-EecCCCCeEEEEEcC
Q 004203 169 SLDHEVRLWNASTAECIG-SRDFYRPIASIAFHA 201 (768)
Q Consensus 169 S~DgtVrLWDl~sg~~i~-~l~h~~~V~svafSP 201 (768)
..+|.|++|.. +|..+. ..-|+.+|..+....
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999997 455433 345788888887653
No 464
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=59.72 E-value=2.7e+02 Score=33.98 Aligned_cols=113 Identities=20% Similarity=0.160 Sum_probs=68.7
Q ss_pred CeEEEEECCCCCEEEE-----EeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC---eEEEE--E
Q 004203 109 STIAAAFSPDGKTLAS-----THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH---EVRLW--N 178 (768)
Q Consensus 109 ~VtslafSPDG~~LaS-----gS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg---tVrLW--D 178 (768)
.+-.++.|||.+++|- |....++++-|+.+|+.+-... .+....++|.+ |++.++....|. .=++| .
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~-d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAA-DGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEec-CCCeEEEEEEcCCCCcceEEEEe
Confidence 5678889999999984 4456789999999997653322 23355689999 777666655543 23333 3
Q ss_pred CCC--CcEEEEec--CCCCeEEEEEcCCCCEEEEEECCe----EEEEEcCCCcc
Q 004203 179 AST--AECIGSRD--FYRPIASIAFHASGELLAVASGHK----LYIWRYNMREE 224 (768)
Q Consensus 179 l~s--g~~i~~l~--h~~~V~svafSPDG~~LatgSdd~----I~IWDl~t~~~ 224 (768)
+.+ .+....+. ...-..++.=+.+.++|+....+. +++.+.+..+.
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~ 260 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEA 260 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCC
Confidence 333 11111222 223334454555667777665332 88888877665
No 465
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=59.65 E-value=1.5e+02 Score=36.90 Aligned_cols=112 Identities=9% Similarity=0.068 Sum_probs=73.3
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-----eEEEEEecCCCCc----------EEEEEccCCCCEEEEEeCCC
Q 004203 109 STIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-----SCLKVLHGHRRTP----------WVVRFHPLNPTIIASGSLDH 172 (768)
Q Consensus 109 ~VtslafSP-DG~~LaSgS~DgtVrVWDl~tg-----~~l~~l~gH~g~V----------~sVafSP~dg~lLaSgS~Dg 172 (768)
+..+++|+| +.+.||.....|.-.|||+... ........+.+.+ ..+.|.+ +.+.|+.+++.
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r~- 224 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNRS- 224 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcCC-
Confidence 567999999 7789999999999999999211 1111111222222 3578988 66666666654
Q ss_pred eEEEEECCCCcEEE-E--ecCCCCeEEEEEcCCC-CEEEEEECCeEEEEEcCCC
Q 004203 173 EVRLWNASTAECIG-S--RDFYRPIASIAFHASG-ELLAVASGHKLYIWRYNMR 222 (768)
Q Consensus 173 tVrLWDl~sg~~i~-~--l~h~~~V~svafSPDG-~~LatgSdd~I~IWDl~t~ 222 (768)
.+.++|+++..... . ......|..+.-+|+. .+++.-+...|...|+...
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~ 278 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSS 278 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCC
Confidence 58899999876533 2 2344578888888763 2344445566777777764
No 466
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=59.53 E-value=10 Score=46.69 Aligned_cols=103 Identities=17% Similarity=0.280 Sum_probs=61.7
Q ss_pred CEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEE-----------ECCCCCEEEEEeCCCeEEEEeC-----CCCeEE
Q 004203 82 RGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAA-----------FSPDGKTLASTHGDHTVKIIDC-----QTGSCL 142 (768)
Q Consensus 82 ~~LvSgs~DgsIrlWd~~t~---~L~gH~~~Vtsla-----------fSPDG~~LaSgS~DgtVrVWDl-----~tg~~l 142 (768)
.++..+-.++.|++....+. -+.+|...++.++ .||||+.|+.+..||.++.|-+ ..-.|+
T Consensus 196 ~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rcl 275 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCL 275 (1283)
T ss_pred ceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhh
Confidence 44444556777777766543 3556777665543 5899999999999998888864 223455
Q ss_pred EEEecCCCCcE-EEEEccCCC---------CEEEEEeC-CCeEEEEECCCCcEE
Q 004203 143 KVLHGHRRTPW-VVRFHPLNP---------TIIASGSL-DHEVRLWNASTAECI 185 (768)
Q Consensus 143 ~~l~gH~g~V~-sVafSP~dg---------~lLaSgS~-DgtVrLWDl~sg~~i 185 (768)
...+.|.+... |.-++. .. .+++++++ ...+++|.-...+|.
T Consensus 276 hewkphd~~p~vC~lc~~-~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 276 HEWKPHDKHPRVCWLCHK-QEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hccCCCCCCCceeeeecc-ccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 56666763322 222322 11 12333333 446888887776665
No 467
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=59.22 E-value=60 Score=34.71 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=69.0
Q ss_pred EEEEeCCCCeEEEEEecCCC-CcEEEEEccCCCCEEEEEeC-C--CeEEEEECCC--CcE--EE---EecCCCCeEEEEE
Q 004203 131 VKIIDCQTGSCLKVLHGHRR-TPWVVRFHPLNPTIIASGSL-D--HEVRLWNAST--AEC--IG---SRDFYRPIASIAF 199 (768)
Q Consensus 131 VrVWDl~tg~~l~~l~gH~g-~V~sVafSP~dg~lLaSgS~-D--gtVrLWDl~s--g~~--i~---~l~h~~~V~svaf 199 (768)
-.+||+.+++.. .+.-... -+..-.+-+ ||+++.+|+. | ..+++++-.. +.+ .. .+.....+....-
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 457898887643 2322222 222234667 8999988765 3 3688888654 111 11 1345566777888
Q ss_pred cCCCCEEEEEECCe--EEEEEcCCCccccCCe-Eeec-----CCCCeEEEEEccCCCeEEEEEe
Q 004203 200 HASGELLAVASGHK--LYIWRYNMREETSSPR-IVLR-----TRRSLRAVHFHPHAAPLLLTAE 255 (768)
Q Consensus 200 SPDG~~LatgSdd~--I~IWDl~t~~~~~~~~-~l~~-----h~~~V~sVaFSPDG~~LlaS~s 255 (768)
-|||+.|+.|+... ..+|.-.......... .+.. ....=-.+...|||+.++.+..
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 89999999988553 6666543221100001 1111 1122236778899997766654
No 468
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=58.23 E-value=1.8e+02 Score=32.28 Aligned_cols=108 Identities=13% Similarity=0.023 Sum_probs=63.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCC------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-CCc
Q 004203 80 ARRGLASWVEAESLHHLRPKYCPL------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTP 152 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~L------~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-g~V 152 (768)
....+.....++.|.-.|.++... ......+.+-.+..+|+ |+.++.++.++.+|.++|+.+....... -.+
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 344455555666666666655431 11112222222333666 7788889999999998999888877655 111
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Q 004203 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF 190 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h 190 (768)
..-..- ....+..++.|+.+.-.|..+|+.......
T Consensus 146 ~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 146 ASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred ecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEec
Confidence 111111 122333344788999999998888776543
No 469
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=56.43 E-value=57 Score=40.86 Aligned_cols=87 Identities=7% Similarity=0.035 Sum_probs=61.7
Q ss_pred EEEEEeC-CCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEE-EE-CC---e--EEEEEcCCCccccCCeEeecC
Q 004203 164 IIASGSL-DHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAV-AS-GH---K--LYIWRYNMREETSSPRIVLRT 234 (768)
Q Consensus 164 lLaSgS~-DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~Lat-gS-dd---~--I~IWDl~t~~~~~~~~~l~~h 234 (768)
.||.... .+.|.+-|......... +.+..+|..-+|+|||+.|+. .+ .+ + |++-|+++... .+.++.-.
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~--~~vkl~ve 397 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS--GLVKLPVE 397 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCC--CceEeecc
Confidence 4555443 35899999987776655 778889999999999999998 44 33 3 99999988765 23444444
Q ss_pred CCCeEEEEEccCCCeEEE
Q 004203 235 RRSLRAVHFHPHAAPLLL 252 (768)
Q Consensus 235 ~~~V~sVaFSPDG~~Lla 252 (768)
...|-.-....+|..+++
T Consensus 398 ~aaiprwrv~e~gdt~iv 415 (912)
T TIGR02171 398 NAAIPRWRVLENGDTVIV 415 (912)
T ss_pred cccccceEecCCCCeEEE
Confidence 556666667777776554
No 470
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=55.27 E-value=41 Score=41.32 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=60.3
Q ss_pred EEEEEccCCCCEEEEEeCCC-----eEEEEECC---CCcEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcc
Q 004203 153 WVVRFHPLNPTIIASGSLDH-----EVRLWNAS---TAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREE 224 (768)
Q Consensus 153 ~sVafSP~dg~lLaSgS~Dg-----tVrLWDl~---sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~ 224 (768)
..+.|-| .|..+++-..|| .|+++.-+ -|+.-...+....+..++|+-....++++..+.+++|-..+-..
T Consensus 250 ~~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHW 328 (1243)
T ss_pred hcccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEE
Confidence 3589999 888889876555 45555432 23332333445567788999888888888888899997654432
Q ss_pred ccCCeEeecCCCCeEEEEEccCCCe
Q 004203 225 TSSPRIVLRTRRSLRAVHFHPHAAP 249 (768)
Q Consensus 225 ~~~~~~l~~h~~~V~sVaFSPDG~~ 249 (768)
..+..-.-..+.-+.|+|..+.
T Consensus 329 ---YLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 329 ---YLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred ---EEEEeecCCCcceeeeccccCc
Confidence 1122223345677889986543
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=54.53 E-value=1.8e+02 Score=31.74 Aligned_cols=93 Identities=9% Similarity=0.088 Sum_probs=58.2
Q ss_pred CCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEe------CCCeEEEEeCCCCeEEEEEecC-----CCCcEE
Q 004203 90 AESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTH------GDHTVKIIDCQTGSCLKVLHGH-----RRTPWV 154 (768)
Q Consensus 90 DgsIrlWd~~t~~----L~gH~~~VtslafSPDG~~LaSgS------~DgtVrVWDl~tg~~l~~l~gH-----~g~V~s 154 (768)
-..|++||....+ -.+-.+.|+++.|..+.++++.|. ....+..||+++.. ...+.+- .++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 4568999987663 234567899999996666666553 35678999988765 3344431 367888
Q ss_pred EEEccCCCC-EEEEEe-CCC--eEEEEECCCCc
Q 004203 155 VRFHPLNPT-IIASGS-LDH--EVRLWNASTAE 183 (768)
Q Consensus 155 VafSP~dg~-lLaSgS-~Dg--tVrLWDl~sg~ 183 (768)
+.+...|.. +.+.|. .++ .|..||-.+..
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 777543444 444444 333 46666654433
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=54.04 E-value=48 Score=34.80 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=35.1
Q ss_pred CEEEEEECCeEEEEEcCCCccccCCeEeecCCCCeEEEEEccCCCeEEEE
Q 004203 204 ELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 204 ~~LatgSdd~I~IWDl~t~~~~~~~~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
.++++.++.+|.+|++..... .+.....+-+.|..+.++..|+|+++-
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~--~~~~~F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEEC--PLLCTFSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCC--ceeEEEcchhheeEEEeccccceEEEE
Confidence 344445667799999984433 344555667899999999999988764
No 473
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=53.31 E-value=4.8e+02 Score=31.41 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=61.4
Q ss_pred CCCCCEEEEEeCC------CeEEEEeCCCCeEEE--EEecCCCCcEEEEEccCCCCEEEEEeCC-C-----eEEEEECCC
Q 004203 116 SPDGKTLASTHGD------HTVKIIDCQTGSCLK--VLHGHRRTPWVVRFHPLNPTIIASGSLD-H-----EVRLWNAST 181 (768)
Q Consensus 116 SPDG~~LaSgS~D------gtVrVWDl~tg~~l~--~l~gH~g~V~sVafSP~dg~lLaSgS~D-g-----tVrLWDl~s 181 (768)
+..+.+++.|+.+ ..|..||..+++-.. .+.. ...-.+++.. ++.+.++|+.| + ++..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEE--CCEEEEEccccCCCcccceEEEecCCC
Confidence 3346667777776 468899988874332 2222 2223344544 47888889988 3 688899888
Q ss_pred CcEEEEecCCCCeEEEEE-cCCCCEEEEEECC-e-----EEEEEcCCCcc
Q 004203 182 AECIGSRDFYRPIASIAF-HASGELLAVASGH-K-----LYIWRYNMREE 224 (768)
Q Consensus 182 g~~i~~l~h~~~V~svaf-SPDG~~LatgSdd-~-----I~IWDl~t~~~ 224 (768)
.+-...-.-...-..... .-+|.+.++|+.+ . +..||..+.+.
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcc
Confidence 773332111111111111 1256666777633 2 88999887764
No 474
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=53.07 E-value=73 Score=34.89 Aligned_cols=103 Identities=14% Similarity=0.083 Sum_probs=76.0
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCC
Q 004203 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSP 228 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~~~ 228 (768)
.....++..| ||..-+++...+.|--.|-++|+.... ++....-..+...|||..-++-+...|...|-++.+...-+
T Consensus 62 ~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~ 140 (353)
T COG4257 62 SAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFP 140 (353)
T ss_pred CCccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEee
Confidence 3456788889 888888888888888889999987665 55555667788899998776655556888888777665433
Q ss_pred eEeecCCCCeEEEEEccCCCeEEEE
Q 004203 229 RIVLRTRRSLRAVHFHPHAAPLLLT 253 (768)
Q Consensus 229 ~~l~~h~~~V~sVaFSPDG~~LlaS 253 (768)
..............|.++|...++.
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~ 165 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTG 165 (353)
T ss_pred cccccCCCcccceeeCCCccEEEee
Confidence 3334446788999999999955443
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=52.99 E-value=1.4e+02 Score=36.74 Aligned_cols=111 Identities=12% Similarity=0.124 Sum_probs=65.3
Q ss_pred CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 004203 104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE 183 (768)
Q Consensus 104 ~gH~~~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~ 183 (768)
......++++.-+|.|+.++.++.||.|++|+.......+... -..+-..+.|.. .-+++...|..+--|.- .|-
T Consensus 11 ~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tn---hgl~~~tsdrr~la~~~-dgv 85 (1636)
T KOG3616|consen 11 PKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTN---HGLVTATSDRRALAWKE-DGV 85 (1636)
T ss_pred ccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeec---cceEEEeccchhheeec-cCc
Confidence 3445568888889999999999999999999986543322221 112233345533 33566666777777753 343
Q ss_pred EEEEec----CCCCeEEEEEcCCCCEEEEEECCeEEEEEc
Q 004203 184 CIGSRD----FYRPIASIAFHASGELLAVASGHKLYIWRY 219 (768)
Q Consensus 184 ~i~~l~----h~~~V~svafSPDG~~LatgSdd~I~IWDl 219 (768)
.+..+. ......++...|..+.++-.--|++.-+|.
T Consensus 86 vqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 86 VQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDC 125 (1636)
T ss_pred chhhccccchhhhhccceecCchhhhhhhhhccceeeehH
Confidence 433333 233555666677665444332445555553
No 476
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=52.69 E-value=45 Score=24.47 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEE--C--CeEEEE
Q 004203 184 CIGSRDFYRPIASIAFHASGELLAVAS--G--HKLYIW 217 (768)
Q Consensus 184 ~i~~l~h~~~V~svafSPDG~~LatgS--d--d~I~IW 217 (768)
..+............|+|||+.|+..+ . +...||
T Consensus 1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 477
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=52.34 E-value=91 Score=28.17 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=32.0
Q ss_pred EeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEECCe
Q 004203 168 GSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK 213 (768)
Q Consensus 168 gS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSdd~ 213 (768)
+..+|.+.-||..+++....+..-..-+.++.++|+++|+++-..+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence 3456789999999987655554444668899999999888886444
No 478
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=51.64 E-value=31 Score=40.67 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCeEEEEECC----CCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 004203 108 RSTIAAAFSP----DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH 148 (768)
Q Consensus 108 ~~VtslafSP----DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH 148 (768)
..+..++++. +..+|++.+.|+++|+||+++++++..+.-.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 4466777777 7789999999999999999999997776543
No 479
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=51.64 E-value=5.1e+02 Score=31.31 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=54.0
Q ss_pred eEEEEECCCCCEEEEEeCC---------CeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC----eEEE
Q 004203 110 TIAAAFSPDGKTLASTHGD---------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH----EVRL 176 (768)
Q Consensus 110 VtslafSPDG~~LaSgS~D---------gtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg----tVrL 176 (768)
+....++|++..++..... ..+.+.|..+ .....+...+..+.|+| ++..++..+.++ .+++
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~l~l 89 (620)
T COG1506 15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFGGGVSELRWSP-DGSVLAFVSTDGGRVAQLYL 89 (620)
T ss_pred ccCcccCCCCceeEEeeccccccccccccceEEEeccc----ccccccCCcccccccCC-CCCEEEEEeccCCCcceEEE
Confidence 3444556666555544332 2344434332 22334566788889999 888888877433 4555
Q ss_pred EECCCCcEEEEecCCCCeEEEEEcCCCCEEEE
Q 004203 177 WNASTAECIGSRDFYRPIASIAFHASGELLAV 208 (768)
Q Consensus 177 WDl~sg~~i~~l~h~~~V~svafSPDG~~Lat 208 (768)
.+.. + ....+...+....|+|+|..++.
T Consensus 90 ~~~~-g---~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 90 VDVG-G---LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred EecC-C---ceeeeecccccceeCCCCCeEEE
Confidence 5555 3 23334566778889999988777
No 480
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.34 E-value=2.1e+02 Score=35.43 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=48.1
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC----------CcE---EEEe---------cCCCCeEEEEEcCCC---
Q 004203 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST----------AEC---IGSR---------DFYRPIASIAFHASG--- 203 (768)
Q Consensus 149 ~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~s----------g~~---i~~l---------~h~~~V~svafSPDG--- 203 (768)
.-.|..|.++| +|.+++-.+..+ |.|-.+.. |+. .+++ .....|..+.|+|.+
T Consensus 84 ~f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 34688899999 999888887766 44444421 111 1111 123478899999964
Q ss_pred CEE-EEEECCeEEEEEcCCCcc
Q 004203 204 ELL-AVASGHKLYIWRYNMREE 224 (768)
Q Consensus 204 ~~L-atgSdd~I~IWDl~t~~~ 224 (768)
..| +-.+|+.+++||+.....
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCC
Confidence 455 455577799999975543
No 481
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=49.52 E-value=1.4e+02 Score=36.68 Aligned_cols=109 Identities=11% Similarity=0.039 Sum_probs=75.2
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------------------CC-CCCCCCeEEEEEC--CCCCEEEEEe
Q 004203 72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------------------PL-SPPPRSTIAAAFS--PDGKTLASTH 126 (768)
Q Consensus 72 ~l~~a~~d~g~~LvSgs~DgsIrlWd~~t~----------------------~L-~gH~~~VtslafS--PDG~~LaSgS 126 (768)
.+.+....+...|+.+.+||.|.+|..+.= .+ ..-..+++++++. ...++||+++
T Consensus 105 ~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSs 184 (717)
T PF08728_consen 105 FIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSS 184 (717)
T ss_pred EEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEec
Confidence 445555557788889999999999966310 01 1124478999998 7888999999
Q ss_pred CCCeEEEEeCCCC--eE-EEEEecCCCCcEEEEEccCC--CC---EEEEEeCCCeEEEEECC
Q 004203 127 GDHTVKIIDCQTG--SC-LKVLHGHRRTPWVVRFHPLN--PT---IIASGSLDHEVRLWNAS 180 (768)
Q Consensus 127 ~DgtVrVWDl~tg--~~-l~~l~gH~g~V~sVafSP~d--g~---lLaSgS~DgtVrLWDl~ 180 (768)
+...|.||-+... +. ...-..|...|-+|.|-+++ +. .+++++-.|.+.+|++.
T Consensus 185 Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 185 NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 9998888865432 11 11011256678899997743 22 78889999999998883
No 482
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=48.20 E-value=4.2e+02 Score=34.06 Aligned_cols=153 Identities=19% Similarity=0.180 Sum_probs=80.3
Q ss_pred eEEEEeCCCCC------CC--CCCCCeEEEEECCCCC--EEEEEeC-----------CCeEEEEeC-CCCeEEEEEecCC
Q 004203 92 SLHHLRPKYCP------LS--PPPRSTIAAAFSPDGK--TLASTHG-----------DHTVKIIDC-QTGSCLKVLHGHR 149 (768)
Q Consensus 92 sIrlWd~~t~~------L~--gH~~~VtslafSPDG~--~LaSgS~-----------DgtVrVWDl-~tg~~l~~l~gH~ 149 (768)
.|++.|...++ +. .-.-.|.++.|+.... +++++.. ++.++.|++ +.|+.+..+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 36667766542 11 2233577778877433 3333322 455777764 3455444442211
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--C-CCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccc
Q 004203 150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--F-YRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET 225 (768)
Q Consensus 150 g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~--h-~~~V~svafSPDG~~LatgS-dd~I~IWDl~t~~~~ 225 (768)
-.-...+.+| -...+++| ....+++||+-..+..+... + ...|..+.|. +..+++|. .+.++++-++.....
T Consensus 934 ~~~~v~Ai~~-f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 934 IPGPVGAICP-FQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred CCccceEEec-cCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCe
Confidence 1122346677 33444443 34589999999887766533 2 5567777664 56777776 455665555544332
Q ss_pred cCCeEeecCCCCeEEEEEccCCC
Q 004203 226 SSPRIVLRTRRSLRAVHFHPHAA 248 (768)
Q Consensus 226 ~~~~~l~~h~~~V~sVaFSPDG~ 248 (768)
-.++.-......|+.+.+-..+.
T Consensus 1010 l~~fadD~~pR~Vt~~~~lD~~t 1032 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELLDYDT 1032 (1205)
T ss_pred EEEEeCCCccceeeEEEEecCCc
Confidence 21111112245666666654444
No 483
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=45.22 E-value=1.2e+02 Score=30.28 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=22.8
Q ss_pred CcEEEEEccC-----CCCEEEEEeCCCeEEEEECCC
Q 004203 151 TPWVVRFHPL-----NPTIIASGSLDHEVRLWNAST 181 (768)
Q Consensus 151 ~V~sVafSP~-----dg~lLaSgS~DgtVrLWDl~s 181 (768)
.|..++|||. .+-+|+.-..++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 5778889882 234677788888898887664
No 484
>smart00020 Tryp_SPc Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Probab=45.14 E-value=23 Score=35.67 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=42.1
Q ss_pred cchhhhhh-HhhhccceeEEEeccCccceEEeecccccccceeeEEcCceeeeeEEEEEEE---------EecCcEEEEe
Q 004203 636 FGTVLTSR-AIRAAHCLTSIQFSPTSENLLLAYGRRHSSLLKSVLIDGEITVPTYTILEVY---------RVSDMELVRV 705 (768)
Q Consensus 636 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 705 (768)
-|.+|..+ .++||||+..-. +..-.+.++.-.+.. .+ ....+++.+++ ...|+.+++.
T Consensus 29 ~GtlIs~~~VLTaahC~~~~~--~~~~~v~~g~~~~~~-------~~---~~~~~~v~~~~~~p~~~~~~~~~DiAll~L 96 (229)
T smart00020 29 GGSLISPRWVLTAAHCVYGSD--PSNIRVRLGSHDLSS-------GE---EGQVIKVSKVIIHPNYNPSTYDNDIALLKL 96 (229)
T ss_pred EEEEecCCEEEECHHHcCCCC--CcceEEEeCcccCCC-------CC---CceEEeeEEEEECCCCCCCCCcCCEEEEEE
Confidence 37777777 899999998765 555566665433222 11 11445566665 3467888875
Q ss_pred ecC--CCCceeeeEe
Q 004203 706 LPS--AEDEVNVACF 718 (768)
Q Consensus 706 ~~~--~~~~~~~~~~ 718 (768)
-.. ..+.|.-+|+
T Consensus 97 ~~~i~~~~~~~pi~l 111 (229)
T smart00020 97 KSPVTLSDNVRPICL 111 (229)
T ss_pred CcccCCCCceeeccC
Confidence 333 2234666665
No 485
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.00 E-value=2.2e+02 Score=33.88 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=45.8
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEE---------CCCCcEE---EEec---------CCCCeEEEEEcCCC----CE
Q 004203 151 TPWVVRFHPLNPTIIASGSLDHEVRLWN---------ASTAECI---GSRD---------FYRPIASIAFHASG----EL 205 (768)
Q Consensus 151 ~V~sVafSP~dg~lLaSgS~DgtVrLWD---------l~sg~~i---~~l~---------h~~~V~svafSPDG----~~ 205 (768)
.|..+..++ .|..++-.+.+|.+.++= ++.|+.. +++. ..-.+..++|+|+. .+
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 466677888 788888778788443321 1234322 1121 11145578999976 35
Q ss_pred EEEEECCeEEEEEcCCCccc
Q 004203 206 LAVASGHKLYIWRYNMREET 225 (768)
Q Consensus 206 LatgSdd~I~IWDl~t~~~~ 225 (768)
++..+|+.|++||+......
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 55566777999999877653
No 486
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=43.81 E-value=1.1e+02 Score=32.61 Aligned_cols=82 Identities=16% Similarity=0.119 Sum_probs=49.8
Q ss_pred EEEEECCCCcEEEE-ecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC----ccccCCeEeecCCCCeEEEEEc
Q 004203 174 VRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR----EETSSPRIVLRTRRSLRAVHFH 244 (768)
Q Consensus 174 VrLWDl~sg~~i~~-l~h~~~V~svafSPDG~~LatgSd--d--~I~IWDl~t~----~~~~~~~~l~~h~~~V~sVaFS 244 (768)
-.+||+.+++.... .....-+..-.|-+||++|.+|++ + ++++++.... +....... .....+=-.+..-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-MQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-ccCCCccccceEC
Confidence 45899998765432 223334455678899999999984 2 2999986541 11110111 2233444556667
Q ss_pred cCCCeEEEEEee
Q 004203 245 PHAAPLLLTAEV 256 (768)
Q Consensus 245 PDG~~LlaS~sv 256 (768)
|||+.|+.++..
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 899988887764
No 487
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=42.87 E-value=50 Score=23.04 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=21.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEEEEE
Q 004203 120 KTLASTHGDHTVKIIDCQTGSCLKVL 145 (768)
Q Consensus 120 ~~LaSgS~DgtVrVWDl~tg~~l~~l 145 (768)
..++.++.++.+..+|.++|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778888999999999999876653
No 488
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=42.58 E-value=1.9e+02 Score=26.08 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=28.4
Q ss_pred CCCeEEEEeCCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe
Q 004203 127 GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS 169 (768)
Q Consensus 127 ~DgtVrVWDl~tg~~l~~l~gH~g~V~sVafSP~dg~lLaSgS 169 (768)
.+|.+..||..+++....+.+- .-.+.|+.++ |+..++.+-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~-d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGL-YFPNGVALSP-DESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEE-SSEEEEEE-T-TSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCC-CccCeEEEcC-CCCEEEEEe
Confidence 3688999999999866655543 3478899999 777666543
No 489
>PLN02153 epithiospecifier protein
Probab=40.68 E-value=5e+02 Score=28.44 Aligned_cols=65 Identities=9% Similarity=0.025 Sum_probs=35.0
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeEEE--EEec---CCCC-cEEEEEccCCCCEEEEEeCC-----------CeEE
Q 004203 118 DGKTLASTHGD-----HTVKIIDCQTGSCLK--VLHG---HRRT-PWVVRFHPLNPTIIASGSLD-----------HEVR 175 (768)
Q Consensus 118 DG~~LaSgS~D-----gtVrVWDl~tg~~l~--~l~g---H~g~-V~sVafSP~dg~lLaSgS~D-----------gtVr 175 (768)
++++++.|+.+ ..+.+||.++.+-.. .+.. .... -..++. - ++++++.|+.+ ..|.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-D-ENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-E-CCEEEEECCccCCCccCCCcccceEE
Confidence 46666666643 358889988754221 1110 1111 112222 2 56777777654 2578
Q ss_pred EEECCCCcE
Q 004203 176 LWNASTAEC 184 (768)
Q Consensus 176 LWDl~sg~~ 184 (768)
+||.++.+-
T Consensus 163 ~yd~~~~~W 171 (341)
T PLN02153 163 AYNIADGKW 171 (341)
T ss_pred EEECCCCeE
Confidence 889887653
No 490
>PRK13613 lipoprotein LpqB; Provisional
Probab=39.90 E-value=7e+02 Score=30.30 Aligned_cols=140 Identities=12% Similarity=0.059 Sum_probs=80.6
Q ss_pred CeEEEEECCCCCEEEEEeCCC-eEEEEeCCCCeE-----EEEEecCCCCcEEEEEccCCCCEEEEEeC--CC--eEEEEE
Q 004203 109 STIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSC-----LKVLHGHRRTPWVVRFHPLNPTIIASGSL--DH--EVRLWN 178 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~Dg-tVrVWDl~tg~~-----l~~l~gH~g~V~sVafSP~dg~lLaSgS~--Dg--tVrLWD 178 (768)
.+.+++.++++..++....++ .+++..+..+.. ...+.+ .....-.|.+ ++. +-+... ++ .+++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~--~~Lt~PS~d~-~g~-vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTAD--GRLTSPSWDG-RGD-LWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeecc--CcccCCcCcC-CCC-EEEecCCCCCceEEEEEc
Confidence 688999999999998877665 566655533322 123332 3455667777 454 333322 22 255554
Q ss_pred CCCCcEEEE--ecCCC-CeEEEEEcCCCCEEEEEEC----CeEEEEEcCC---Cc-cccCCeEeecCCCCeEEEEEccCC
Q 004203 179 ASTAECIGS--RDFYR-PIASIAFHASGELLAVASG----HKLYIWRYNM---RE-ETSSPRIVLRTRRSLRAVHFHPHA 247 (768)
Q Consensus 179 l~sg~~i~~--l~h~~-~V~svafSPDG~~LatgSd----d~I~IWDl~t---~~-~~~~~~~l~~h~~~V~sVaFSPDG 247 (768)
- +|+.... ....+ .|..+..++||..++.-.+ ++|++=-+.. +. ....+..+......+.++.|..++
T Consensus 440 ~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~ 518 (599)
T PRK13613 440 G-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDS 518 (599)
T ss_pred C-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCC
Confidence 3 4544322 22333 8999999999997776553 3355444422 11 112222332333458999999999
Q ss_pred CeEEEE
Q 004203 248 APLLLT 253 (768)
Q Consensus 248 ~~LlaS 253 (768)
..++.+
T Consensus 519 sL~Vlg 524 (599)
T PRK13613 519 QLVVLG 524 (599)
T ss_pred EEEEEe
Confidence 855544
No 491
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=39.44 E-value=6.6e+02 Score=29.10 Aligned_cols=140 Identities=12% Similarity=0.165 Sum_probs=84.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCC--------CCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEeCCC--Ce----
Q 004203 80 ARRGLASWVEAESLHHLRPKYCPLS--------PPPRSTIAAAFSP-----DGKTLASTHGDHTVKIIDCQT--GS---- 140 (768)
Q Consensus 80 ~g~~LvSgs~DgsIrlWd~~t~~L~--------gH~~~VtslafSP-----DG~~LaSgS~DgtVrVWDl~t--g~---- 140 (768)
+...|+.|+..|.+++++.....+. .-+.+|..++.-. +...||+ -.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 5678999999999999999654322 2345677666542 2234444 4456777887621 11
Q ss_pred ---EEEEEecCC--CCcEEEEEccCC----CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 004203 141 ---CLKVLHGHR--RTPWVVRFHPLN----PTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG 211 (768)
Q Consensus 141 ---~l~~l~gH~--g~V~sVafSP~d----g~lLaSgS~DgtVrLWDl~sg~~i~~l~h~~~V~svafSPDG~~LatgSd 211 (768)
.+..+..|. .....+++-|.+ .+++..=+.||.+.+++-+.-.....+...--...++|.+.-..+++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 223333343 223344443322 36788889999999999876554444432222234677787777777775
Q ss_pred C-eEEEEEcC
Q 004203 212 H-KLYIWRYN 220 (768)
Q Consensus 212 d-~I~IWDl~ 220 (768)
. .+..|.+.
T Consensus 195 s~~l~~Yky~ 204 (418)
T PF14727_consen 195 SWTLECYKYQ 204 (418)
T ss_pred ceeEEEecHH
Confidence 4 57777653
No 492
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=39.37 E-value=4e+02 Score=34.27 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=56.4
Q ss_pred eEEEEeCCCCeEEEEEecCC----CCcEEEEEccCCCC-EEEEEe-----------CCCeEEEEECC-CCcEEEEecCCC
Q 004203 130 TVKIIDCQTGSCLKVLHGHR----RTPWVVRFHPLNPT-IIASGS-----------LDHEVRLWNAS-TAECIGSRDFYR 192 (768)
Q Consensus 130 tVrVWDl~tg~~l~~l~gH~----g~V~sVafSP~dg~-lLaSgS-----------~DgtVrLWDl~-sg~~i~~l~h~~ 192 (768)
.|+++|..+++.+..+.-.. -.+..+.|+..+.. +++.+. .+|.++.|++- .|+.++ +-|..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~le-llh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLE-LLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceee-eeecc
Confidence 48888988887665553221 13555667653333 333332 23456777654 344222 22322
Q ss_pred --CeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc
Q 004203 193 --PIASIAFHASGELLAVASGHKLYIWRYNMREETS 226 (768)
Q Consensus 193 --~V~svafSPDG~~LatgSdd~I~IWDl~t~~~~~ 226 (768)
+-.-.+.+|-..++.+|-++.+++||+.+++..+
T Consensus 933 ~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLR 968 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLR 968 (1205)
T ss_pred CCCccceEEeccCCEEEEecccEEEEeeCChHHHHh
Confidence 2223566787778888888889999998876544
No 493
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=39.19 E-value=5.9e+02 Score=28.44 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=85.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE--ecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE--
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-- 184 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l--~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~-- 184 (768)
.+.++.++ +++.+.+.++.-++|.|+.+......+ -...+-.+++.. .|+++..+..|.-+-+.|+.+.+.
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCce
Confidence 45667776 678888888889999999876533222 112243444444 578888888666677889986543
Q ss_pred -EEEecCC-CCeEEEEEcCCCCEEEEE-ECCeEEEEEcCCCccccCCeEeec--CCCCeEEEEEccCCCeEEEEE
Q 004203 185 -IGSRDFY-RPIASIAFHASGELLAVA-SGHKLYIWRYNMREETSSPRIVLR--TRRSLRAVHFHPHAAPLLLTA 254 (768)
Q Consensus 185 -i~~l~h~-~~V~svafSPDG~~Latg-Sdd~I~IWDl~t~~~~~~~~~l~~--h~~~V~sVaFSPDG~~LlaS~ 254 (768)
....... ..-..++.+ |++-..+ -++++.+.|+..... |..+.. ....++++..+++-.+++.-.
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s---Pvli~~~n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS---PVLIGSYNTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC---CeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence 2223222 223455554 5555555 467799999988764 223222 233789999998887666533
No 494
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=38.88 E-value=70 Score=23.68 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.0
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEec
Q 004203 121 TLASTHGDHTVKIIDCQTGSCLKVLHG 147 (768)
Q Consensus 121 ~LaSgS~DgtVrVWDl~tg~~l~~l~g 147 (768)
.++.++.||.|+-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456679999999999999999888763
No 495
>PRK13614 lipoprotein LpqB; Provisional
Probab=37.55 E-value=6.5e+02 Score=30.42 Aligned_cols=140 Identities=15% Similarity=0.145 Sum_probs=78.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEecCCCCcEEEEEccCCCCEEEEEeCCC--eEEEEECC-CCcE
Q 004203 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRFHPLNPTIIASGSLDH--EVRLWNAS-TAEC 184 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~DgtVrVWDl~tg~~l-~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg--tVrLWDl~-sg~~ 184 (768)
.+.+++.++|++.++....|+. .+|-...+... ..+.+ ..+..-.|.+ ++ .+-+...+. .|..+.-. +++.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~-~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSP-QD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccC-CC-CEEEeeCCCCceEEEEecCCCccc
Confidence 6889999999999998877762 33322223332 33443 3356667877 55 344444333 33333321 2211
Q ss_pred -------EEEecCCC-CeEEEEEcCCCCEEEEEE--CCe--EEEEEcCC---Cc--cccCCeEeecCCCCeEEEEEccCC
Q 004203 185 -------IGSRDFYR-PIASIAFHASGELLAVAS--GHK--LYIWRYNM---RE--ETSSPRIVLRTRRSLRAVHFHPHA 247 (768)
Q Consensus 185 -------i~~l~h~~-~V~svafSPDG~~LatgS--dd~--I~IWDl~t---~~--~~~~~~~l~~h~~~V~sVaFSPDG 247 (768)
+..-...+ .|..+..++||..++.-. +++ |++=-+.. +. ....+..+ .....+.++.|..++
T Consensus 419 ~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 419 AQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDS 497 (573)
T ss_pred ccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCC
Confidence 11111333 599999999999777655 555 66644422 21 11112222 234688999999999
Q ss_pred CeEEEEE
Q 004203 248 APLLLTA 254 (768)
Q Consensus 248 ~~LlaS~ 254 (768)
..++.+.
T Consensus 498 sl~V~~~ 504 (573)
T PRK13614 498 TVVVTKA 504 (573)
T ss_pred EEEEEec
Confidence 8555543
No 496
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=35.81 E-value=4.9e+02 Score=28.38 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCC--CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE----
Q 004203 111 IAAAFSPDGKTLASTHGDHTVKIIDCQT--GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---- 184 (768)
Q Consensus 111 tslafSPDG~~LaSgS~DgtVrVWDl~t--g~~l~~l~gH~g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~---- 184 (768)
....+.-++++|+.|.++| +++.|+.. ++..+.+ +...|..+...+..+-+++-++....++++|+..-..
T Consensus 5 ~~~~~~~~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~ 81 (302)
T smart00036 5 WNHPITCDGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEA 81 (302)
T ss_pred EccccccCCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhc
Q ss_pred ------------EEEecCCCCeEEEEEcCCCC--EEEEEECCeEEEEEcCCC
Q 004203 185 ------------IGSRDFYRPIASIAFHASGE--LLAVASGHKLYIWRYNMR 222 (768)
Q Consensus 185 ------------i~~l~h~~~V~svafSPDG~--~LatgSdd~I~IWDl~t~ 222 (768)
...+.+......++...... +++.+...+|.++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~ 133 (302)
T smart00036 82 LGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNP 133 (302)
T ss_pred cCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccCh
No 497
>PHA02790 Kelch-like protein; Provisional
Probab=35.60 E-value=7.7e+02 Score=28.71 Aligned_cols=124 Identities=8% Similarity=-0.006 Sum_probs=60.8
Q ss_pred CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCCCeEEE--EEecCCCCcEEEEEcc
Q 004203 91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLK--VLHGHRRTPWVVRFHP 159 (768)
Q Consensus 91 gsIrlWd~~t~~------L~gH~~~VtslafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~--~l~gH~g~V~sVafSP 159 (768)
.++..||..+.+ +.........+. -+|+..+.|+.+ ..+..||.++.+-.. .+.........+. -
T Consensus 331 ~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~ 406 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--F 406 (480)
T ss_pred CceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--E
Confidence 458888876542 221111222222 257777777754 347788887654221 1111111111122 2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEE--ecCCCCeEEEEEcCCCCEEEEEEC------CeEEEEEcCCCc
Q 004203 160 LNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASGELLAVASG------HKLYIWRYNMRE 223 (768)
Q Consensus 160 ~dg~lLaSgS~DgtVrLWDl~sg~~i~~--l~h~~~V~svafSPDG~~LatgSd------d~I~IWDl~t~~ 223 (768)
++.+.+.|+ .+.+||.++.+-... +.....-..++ --+|++.++|+. +.+..||..+.+
T Consensus 407 -~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 407 -GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred -CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 567777764 467888877654332 12212112222 225666666652 126677766554
No 498
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=35.29 E-value=6.4e+02 Score=27.67 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=72.0
Q ss_pred CCeEEEEECCCCCEEEEE------------e------CCCeEEEEeCCCCeEEEEEec--CC------------------
Q 004203 108 RSTIAAAFSPDGKTLAST------------H------GDHTVKIIDCQTGSCLKVLHG--HR------------------ 149 (768)
Q Consensus 108 ~~VtslafSPDG~~LaSg------------S------~DgtVrVWDl~tg~~l~~l~g--H~------------------ 149 (768)
.....+.+.++|..|++. + .|..+...|++||+.+..... |-
T Consensus 57 ~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~ 136 (299)
T PF14269_consen 57 ADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGS 136 (299)
T ss_pred CCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcC
Confidence 346777778888877732 1 166777788888887655421 10
Q ss_pred -------CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-C-C----eEEEEEcCCCCEEEEEE-CCeEE
Q 004203 150 -------RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-R-P----IASIAFHASGELLAVAS-GHKLY 215 (768)
Q Consensus 150 -------g~V~sVafSP~dg~lLaSgS~DgtVrLWDl~sg~~i~~l~h~-~-~----V~svafSPDG~~LatgS-dd~I~ 215 (768)
--+++|...+ +|++|+|...-.+|.+.|-++|+.+..+.-+ . . -..++|-.|-+++-... ++.|.
T Consensus 137 ~~~~~D~~HiNsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~Is 215 (299)
T PF14269_consen 137 SSFPWDYFHINSVDKDD-DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTIS 215 (299)
T ss_pred CCCCCCccEeeeeeecC-CccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEE
Confidence 0145566666 7899999999999999999999998887533 1 1 11244444444443333 34488
Q ss_pred EEEcC
Q 004203 216 IWRYN 220 (768)
Q Consensus 216 IWDl~ 220 (768)
++|=.
T Consensus 216 lFDN~ 220 (299)
T PF14269_consen 216 LFDNA 220 (299)
T ss_pred EEcCC
Confidence 88863
No 499
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=33.81 E-value=6.4e+02 Score=27.28 Aligned_cols=65 Identities=9% Similarity=0.092 Sum_probs=36.6
Q ss_pred CCCEEEEEeC-----CCeEEEEeCCCCeEE--EEEecCCCCcEEEEEccCCCCEEEEEeCCC----eEEEEECCCCcE
Q 004203 118 DGKTLASTHG-----DHTVKIIDCQTGSCL--KVLHGHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWNASTAEC 184 (768)
Q Consensus 118 DG~~LaSgS~-----DgtVrVWDl~tg~~l--~~l~gH~g~V~sVafSP~dg~lLaSgS~Dg----tVrLWDl~sg~~ 184 (768)
++++.+.|+. ...+.+||+++.+-. ..+... .........- ++++.+.|+.++ .+..||.++.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCee
Confidence 5666666664 246889998775422 212211 1112222223 677888887664 356889887654
No 500
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=33.75 E-value=6.8e+02 Score=27.53 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=88.6
Q ss_pred CeEEEEECCCCCEEEEEeCC------CeEEEEeCCCCeEEEEEe---------------cCCCCcEEEEEccCCCCEEEE
Q 004203 109 STIAAAFSPDGKTLASTHGD------HTVKIIDCQTGSCLKVLH---------------GHRRTPWVVRFHPLNPTIIAS 167 (768)
Q Consensus 109 ~VtslafSPDG~~LaSgS~D------gtVrVWDl~tg~~l~~l~---------------gH~g~V~sVafSP~dg~lLaS 167 (768)
-..+|++.++|.++++.-.+ ..|+.+|.+ |+....+. ......-.++++| +++.|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEE
Confidence 45588887788888887777 899999977 66544431 1234577899999 7775555
Q ss_pred EeC-----CC--e-------EEEE--ECCC-CcEEEE----ec------CCCCeEEEEEcCCCCEEEEEEC-----C-e-
Q 004203 168 GSL-----DH--E-------VRLW--NAST-AECIGS----RD------FYRPIASIAFHASGELLAVASG-----H-K- 213 (768)
Q Consensus 168 gS~-----Dg--t-------VrLW--Dl~s-g~~i~~----l~------h~~~V~svafSPDG~~LatgSd-----d-~- 213 (768)
+.. |+ . ++|+ |..+ ++.... +. ....+..+.+-+++++|+.=-+ + .
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ 243 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYK 243 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceE
Confidence 332 22 1 4554 5544 322222 22 2457889999999998775432 1 2
Q ss_pred -EEEEEcCCCcccc-------------CCeEeec------CCCCeEEEEEcc--CCCeEEEEEeeCCcC
Q 004203 214 -LYIWRYNMREETS-------------SPRIVLR------TRRSLRAVHFHP--HAAPLLLTAEVNDLD 260 (768)
Q Consensus 214 -I~IWDl~t~~~~~-------------~~~~l~~------h~~~V~sVaFSP--DG~~LlaS~svwdl~ 260 (768)
|+..|+....... ....+.. ....+..|+|-| +|+..++-.++++..
T Consensus 244 ri~~v~l~~at~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF~ 312 (326)
T PF13449_consen 244 RIYRVDLSDATDVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNFN 312 (326)
T ss_pred EEEEEEcccccccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCCC
Confidence 5555554321110 0001100 145677888877 677666666666664
Done!