BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004205
(768 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 252/652 (38%), Positives = 354/652 (54%), Gaps = 48/652 (7%)
Query: 119 TTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQ 178
TT SWDF+G + +P S + + NI+VG +DTGIWPESPSF D G P P KWKG
Sbjct: 1 TTRSWDFLGF----PLTVPRRS-QVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGT 55
Query: 179 CESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYV 238
CE+ F CNRK+IGAR Y G V PRD++GHG+HTASTAAG V
Sbjct: 56 CETSNNFR---CNRKIIGARSYHIGRPISPGDVN-----GPRDTNGHGTHTASTAAGGLV 107
Query: 239 ANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPE 298
+ N YK CW+ GC D D+LAA+DDAI DGV I+SLS+G
Sbjct: 108 SQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGA 167
Query: 299 APQGDYFSDAISIGSFHATSRGILVVASAGNEG-NEGSVTNLAPWMFTIAASSTDRDFTS 357
P+ YF DAI+IGSFHA RGIL SAGN G N + +L+PW+ ++AAS+ DR F +
Sbjct: 168 NPR-HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226
Query: 358 EIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVL 417
++ +G+G +F G S++ N ++S + F S +C + S+N +GK++
Sbjct: 227 QVQIGNGQSFQGVSINTFD-NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIV 285
Query: 418 VCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYI 477
VC E+ K G +L+ +D A + +PS+V+ L YI
Sbjct: 286 VC-------EASFGPHEFFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYI 338
Query: 478 SHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAV 537
+ IF + T+L + AP V +FSS+GPN +++KPD++ PG+ I+AAW P+V
Sbjct: 339 YSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW-PSV 396
Query: 538 GKMQ-------FNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHK 590
+ FNI+SGTSM+CPH+TGIAT +K +P+WSP+AIKSA+MTTA+ ++
Sbjct: 397 APVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFN 456
Query: 591 PITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLHLVTRD 650
P F YGSG +NP K + PGL+YDA DY FLC GY+ +++ +T D
Sbjct: 457 PQA---------EFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGD 507
Query: 651 NSKC-SQKLPAPYDLNYPSITV---PNLKGNFSVTRSVTNVGKPRSIYKXXXXXXXXXXX 706
S C S +DLNYPS + P+ N R++T+V S Y+
Sbjct: 508 YSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTI 567
Query: 707 XXXXERLIFNSYGQKINFTVHFKLTSPPKGYGF-GYLSWKNGKLRVTSPLVV 757
L FN G + +FT+ + + KG+ L W +G V SP+ +
Sbjct: 568 SVNPNVLSFNGLGDRKSFTLTVRGSI--KGFVVSASLVWSDGVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 348 bits (892), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 233/660 (35%), Positives = 347/660 (52%), Gaps = 41/660 (6%)
Query: 119 TTHSWDFMGLMGEESM-EIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKG 177
TTH+ DF+ L + G ++IV +D+GIWPES SF D GMP P +WKG
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQ----DVIVAVLDSGIWPESASFQDDGMPEIPKRWKG 56
Query: 178 QCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRY 237
C+ G FNAS CNRK+IGA Y+ G A + V ++ S RD+ GHG+H AS AG +
Sbjct: 57 ICKPGTQFNASMCNRKLIGANYFNKGILANDPTVN-ITMNSARDTDGHGTHCASITAGNF 115
Query: 238 VANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGP 297
+++ VYK ++ G + DL+AA D A+ DGV ++S+S G
Sbjct: 116 AKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGY 175
Query: 298 EAPQGDYFSDAISIGSFHATSRGILVVASAGNEG-NEGSVTNLAPWMFTIAASSTDRDFT 356
+ DAISI SF A +G+LV ASAGN G GS+ N +PW+ +A+ TDR F
Sbjct: 176 RFIP--LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFA 233
Query: 357 SEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKV 416
+ LG+G G SL A A + + Y + S L N +
Sbjct: 234 GTLTLGNGLKIRGWSL----FPARAFVRDSPVIYNKTLSDCSSEELLSQVEN---PENTI 286
Query: 417 LVCR-HAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILS 475
++C + + S + ++ +K A + + ++PG + F P VV KK G ++++
Sbjct: 287 VICDDNGDFSDQMRIITRARLKAA----IFISEDPGVFRSATFPNPGVVVNKKEGKQVIN 342
Query: 476 YISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSP 535
Y+ ++ + I +T L ++PAP VAA S++GP+ I KPD+ APG+ I+AA+ P
Sbjct: 343 YVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPP 402
Query: 536 AV--GKMQFNIL--------SGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATAL 585
V + NIL SGTSMA PH GIA ++KA HP WSPSAI+SA+MTTA L
Sbjct: 403 NVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPL 462
Query: 586 DKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSIGYDEKSLH 645
D KPI + D G+G ++P + L PGL+YDA P DY LCS+ + E+
Sbjct: 463 DNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFK 522
Query: 646 LVTRDNSKCSQKLPAPYDLNYPS-ITVPNLKGNFSV-----TRSVTNVGKPRSIYKXXXX 699
+ R ++ + P+ DLNYPS I + +++GNF++ R+VTNVGK + YK
Sbjct: 523 TIARSSASHNCSNPSA-DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLK 581
Query: 700 XXXXXXXXXXXERLIFNSYGQKINFTVHFK-LTSPPKGYGFGYLSW--KNGKLRVTSPLV 756
+ L+F + +K ++T+ + + + G ++W +NG V SP+V
Sbjct: 582 APKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 150/355 (42%), Gaps = 51/355 (14%)
Query: 279 AFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTN 338
A DA+ G ++++S G A D +A S+G+ +V SAGN+ + G T
Sbjct: 149 AIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTR 208
Query: 339 L----------------APWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASAR 382
L A T+A+ S D+ T E + + + + N R
Sbjct: 209 LPLADHPDYGVVGTPAAADSTLTVASYSPDKQLT-ETATVKTDDHQAKEMPVLSTN---R 264
Query: 383 IISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGV 442
E Y Y + E K GK+ + + + K+ + K+AG V
Sbjct: 265 F----EPNKAYDYAYANRGMKEDDFKDVK--GKIALIERGDIDFKDKIANA---KKAGAV 315
Query: 443 GMILVDEPGKD--VAIPFV--IPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEP 498
G+++ D K + +P V +P+A + +K G +L + SK VL +
Sbjct: 316 GVLIYDNQDKGFPIELPNVDQMPAAFISRKDG--LL--LKDNSKKTITFNATPKVLPTAS 371
Query: 499 APRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGI 558
+++ FSS G A +KPD+ APG +I++ +V ++ LSGTSM+ P V GI
Sbjct: 372 DTKLSRFSSWGLTADGN--IKPDIAAPGQDILS----SVANNKYAKLSGTSMSAPLVAGI 425
Query: 559 ATLIK----AVHPSWSPSA----IKSAIMTTATALDKNHKPITVDPKGRRGNAFD 605
L++ +P +PS K +M++ATAL + P+ + A D
Sbjct: 426 MGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVD 480
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 502 VAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQ-----FNILSGTSMACPHVT 556
+ FSS+GP A N LKP+V APG IIAA + Q + GT+MA PHV
Sbjct: 309 ITDFSSRGPTADNR--LKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVA 366
Query: 557 GIATLIKAVHPSWSPSAIKSAIMTTA 582
GIA L+ HPSW+P +K+A++ TA
Sbjct: 367 GIAALLLQAHPSWTPDKVKTALIETA 392
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 60/304 (19%)
Query: 94 DQQASQIAQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEESMEI-PGFSTKNQVN---IIV 149
DQ+ S I +F N + DF+G + + I P + K +V II
Sbjct: 33 DQEVSTII-------MFDNQADKEKAVEILDFLGAKIKYNYHIIPALAVKIKVKDLLIIA 85
Query: 150 GFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEA--- 206
G +DTG + + S + K E+ E + S+ +V+ + GY+
Sbjct: 86 GLMDTGYFGNA-QLSGVQFIQEDYVVKVAVET-EGLDESAA--QVMATNMWNLGYDGSGI 141
Query: 207 ----------------EEDIVETVSF----RSPRDSSGHGSHTASTAAGRYVA-NMNYXX 245
+ ++ V F +P D +GHG+H AS AAG A N Y
Sbjct: 142 TIGIIDTGIDASHPDLQGKVIGWVDFVNGKTTPYDDNGHGTHVASIAAGTGAASNGKYKG 201
Query: 246 XXXXXXXXXXXXXXXXVYKTCWDSGCYDV-DLLAAFDDAIRD----GVHILSLSLGPEAP 300
K G + D++ D A+++ G+ +++LSLG +
Sbjct: 202 MAPGAKLVGI--------KVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLG--SS 251
Query: 301 QGDYFSDAISIGSFHATSRGILVVASAGNEG-NEGSVTNLAPWMFTIAASSTDR-----D 354
Q +D++S +A G++VV +AGN G N+ +V + A I + D+ D
Sbjct: 252 QSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDVITD 311
Query: 355 FTSE 358
F+S
Sbjct: 312 FSSR 315
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A FSS GP + DV APG++I + + ++ LS
Sbjct: 162 YPSVIAVGAVDSSNQRAPFSSVGP--------ELDVMAPGVSICST----LPGGKYGALS 209
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ TAT L G++F Y
Sbjct: 210 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKL---------------GDSFYY 254
Query: 607 GSGFLN 612
G G +N
Sbjct: 255 GKGLIN 260
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I WS G ++ S
Sbjct: 159 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSI---WSTLPGN-KYGAKS 206
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT MA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 207 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 251
Query: 607 GSGFLN 612
G G +N
Sbjct: 252 GKGLIN 257
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + + ++ S
Sbjct: 162 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSICST----LPGNKYGAKS 209
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L GN+F Y
Sbjct: 210 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GNSFYY 254
Query: 607 GSGFLN 612
G G +N
Sbjct: 255 GKGLIN 260
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A FSS GP + DV APG++I + + ++ LS
Sbjct: 162 YPSVIAVGAVDSSNQRAPFSSVGP--------ELDVMAPGVSICST----LPGGKYGALS 209
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT+MA PHV G A LI + HP+W+ + ++S++ TAT L G++F Y
Sbjct: 210 GTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKL---------------GDSFYY 254
Query: 607 GSGFLN 612
G G +N
Sbjct: 255 GKGLIN 260
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + + ++ S
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIXST----LPGNKYGAYS 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I++ + ++ S
Sbjct: 162 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIVST----LPGNKYGAKS 209
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT+MA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 210 GTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 254
Query: 607 GSGFLN 612
G G +N
Sbjct: 255 GKGLIN 260
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I++ + ++ S
Sbjct: 162 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIVST----LPGNKYGAKS 209
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT+MA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 210 GTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 254
Query: 607 GSGFLN 612
G G +N
Sbjct: 255 GKGLIN 260
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG+N+ + + + + L+GTSMA PHV G+A L+K +PSWS I++ +
Sbjct: 191 DIVAPGVNVQSTYPGST----YASLNGTSMATPHVAGVAALVKQKNPSWSNVQIRNHLKN 246
Query: 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
TAT L GN YGSG +N
Sbjct: 247 TATGL---------------GNTNLYGSGLVN 263
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 283 AIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNLAPW 342
A +G+H+ +LSLG +P A++ ATSRG+LVVA++GN G GS++ A +
Sbjct: 112 AGNNGMHVANLSLGSPSPSAT-LEQAVN----SATSRGVLVVAASGNSG-AGSISYPARY 165
Query: 343 MFTIAASSTDRD 354
+A +TD++
Sbjct: 166 ANAMAVGATDQN 177
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + + ++ S
Sbjct: 162 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSICST----LPGNKYGAKS 209
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 210 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 254
Query: 607 GSGFLN 612
G G +N
Sbjct: 255 GKGLIN 260
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + + ++ S
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSICST----LPGNKYGAKS 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + + ++ S
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIXST----LPGNKYGAYS 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTYL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + + ++ S
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSICST----LPGNKYGAKS 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + ++ +
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSI----QSTLPGNKYGAYN 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + ++ +
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSI----QSTLPGNKYGAYN 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + ++ S
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSI----QSTLPGNKYGAKS 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + ++ +
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSI----QSTLPGNKYGAYN 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + ++ +
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSI----QSTLPGNKYGAYN 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + + ++ +
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQST----LPGNKYGAYN 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + + ++ S
Sbjct: 162 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSICST----LPGNKYGAKS 209
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT MA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 210 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 254
Query: 607 GSGFLN 612
G G +N
Sbjct: 255 GKGLIN 260
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + ++ S
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSI----QSTLPGNKYGAYS 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT MA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + ++ S
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSI----QSTLPGNKYGAYS 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT MA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + ++ S
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSI----QSTLPGNKYGAKS 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT MA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 19/116 (16%)
Query: 501 RVAAFSSKG--PNALNPEILKPDV--TAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVT 556
RVA +SS+G A + I + D+ +APG ++ + W +N +SGTSMA PHV+
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG----GYNTISGTSMATPHVS 257
Query: 557 GIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAF--DYGSGF 610
G+A I A +PS S + ++S + + +VD KG G A DY SGF
Sbjct: 258 GLAAKIWAENPSLSNTQLRSNLQ---------ERAKSVDIKGGYGAAIGDDYASGF 304
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGC-YDVD 275
S D +GHG+H A TA + YK DSG Y D
Sbjct: 63 NSCTDRNGHGTHVAGTA-------LADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYSDD 115
Query: 276 LLAAF----DDAIRDGVH-ILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNE 330
+ AA D A G I+S+SLG A S A++ +A S+G+L+VA+AGN
Sbjct: 116 IAAAIRHAADQATATGTKTIISMSLGSSANN-SLISSAVN----YAYSKGVLIVAAAGNS 170
Query: 331 G 331
G
Sbjct: 171 G 171
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 143/361 (39%), Gaps = 63/361 (17%)
Query: 279 AFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTN 338
A DAI G +++ S G A D +A S+G+ +V SAGN+ + G T
Sbjct: 140 AIRDAINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTR 199
Query: 339 L----------------APWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASAR 382
L A T+A+ S D+ T + + + + +
Sbjct: 200 LPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVK----------TADQQDKEXP 249
Query: 383 IISAS--EAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAG 440
++S + E Y Y + E K GK+ + + + K+ K+
Sbjct: 250 VLSTNRFEPNKAYDYAYANRGTKEDDFKDVK--GKIALIERGDIDFKDKIAKAKKAGA-- 305
Query: 441 GVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKT-------- 492
VG+++ D +D P +P+ ++IS + K P KT
Sbjct: 306 -VGVLIYD--NQDKGFPIELPNV------DQXPAAFISRKDGLLLKDNPQKTITFNATPK 356
Query: 493 VLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMAC 552
VL + +++ FSS G A +KPD+ APG +I++ +V ++ LSGTS +
Sbjct: 357 VLPTASGTKLSRFSSWGLTADGN--IKPDIAAPGQDILS----SVANNKYAKLSGTSXSA 410
Query: 553 PHVTGIATLIK----AVHPSWSPSA----IKSAIMTTATALDKNHKPITVDPKGRRGNAF 604
P V GI L++ +P +PS K + ++ATAL + P+ + A
Sbjct: 411 PLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQGAGAV 470
Query: 605 D 605
D
Sbjct: 471 D 471
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + ++ +
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSI----QSTLPGNKYGAYN 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT MA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + ++ +
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSI----QSTLPGNKYGAYN 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT MA PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG+N+ + + + + L+GTSMA PHV G A L+K +PSWS I++ +
Sbjct: 191 DIVAPGVNVQSTYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKN 246
Query: 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
TAT+L G+ YGSG +N
Sbjct: 247 TATSL---------------GSTNLYGSGLVN 263
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 316 ATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRD 354
ATSRG+LVVA++GN G GS++ A + +A +TD++
Sbjct: 140 ATSRGVLVVAASGNSG-AGSISYPARYANAMAVGATDQN 177
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG+N+ + + + + L+GTSMA PHV G A L+K +PSWS I++ +
Sbjct: 191 DIVAPGVNVQSTYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKN 246
Query: 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
TAT+L G+ YGSG +N
Sbjct: 247 TATSL---------------GSTNLYGSGLVN 263
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 38/149 (25%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGCYDVDLL 277
S +D +GHG+H A T +A +N V + Y V +L
Sbjct: 55 STQDGNGHGTHVAGT-----IAALN---------------NSIGVLGVAPSAELYAVKVL 94
Query: 278 AA------------FDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVA 325
A + A +G+H+ +LSLG +P A++ ATSRG+LVVA
Sbjct: 95 GADGRGAISSIAQGLEWAGNNGMHVANLSLGSPSPSAT-LEQAVN----SATSRGVLVVA 149
Query: 326 SAGNEGNEGSVTNLAPWMFTIAASSTDRD 354
++GN G S++ A + +A +TD++
Sbjct: 150 ASGNSG-ASSISYPARYANAMAVGATDQN 177
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG+N+ + + + + L+GTSMA PHV G A L+K +PSWS I++ +
Sbjct: 191 DIVAPGVNVQSTYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKN 246
Query: 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
TAT+L G+ YGSG +N
Sbjct: 247 TATSL---------------GSTNLYGSGLVN 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 38/149 (25%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGCYDVDLL 277
S +D +GHG+H A T +A +N V ++ Y V +L
Sbjct: 55 STQDGNGHGTHVAGT-----IAALN---------------NSIGVLGVAPNAELYAVKVL 94
Query: 278 A------------AFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVA 325
+ A +G+H+ +LSLG +P A++ ATSRG+LVVA
Sbjct: 95 GASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSAT-LEQAVN----SATSRGVLVVA 149
Query: 326 SAGNEGNEGSVTNLAPWMFTIAASSTDRD 354
++GN G GS++ A + +A +TD++
Sbjct: 150 ASGNSG-AGSISYPARYANAMAVGATDQN 177
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG+N+ + + + + L+GTSMA PHV G A L+K +PSWS I++ +
Sbjct: 191 DIVAPGVNVQSTYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKN 246
Query: 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
TAT+L G+ YGSG +N
Sbjct: 247 TATSL---------------GSTNLYGSGLVN 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 38/149 (25%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGCYDVDLL 277
S +D +GHG+H A T +A +N V ++ Y V +L
Sbjct: 55 STQDGNGHGTHVAGT-----IAALN---------------NSIGVLGVAPNAELYAVKVL 94
Query: 278 A------------AFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVA 325
+ A +G+H+ +LSLG +P A++ ATSRG+LVVA
Sbjct: 95 GASGGGSNSSIAQGLEWAGNNGMHVANLSLGSPSPSAT-LEQAVN----SATSRGVLVVA 149
Query: 326 SAGNEGNEGSVTNLAPWMFTIAASSTDRD 354
++GN G GS++ A + +A +TD++
Sbjct: 150 ASGNSG-AGSISYPARYANAMAVGATDQN 177
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG+N+ + + + + L+GTSMA PHV G A L+K +PSWS I++ +
Sbjct: 191 DIVAPGVNVQSTYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKN 246
Query: 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
TAT+L G+ YGSG +N
Sbjct: 247 TATSL---------------GSTNLYGSGLVN 263
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 283 AIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNLAPW 342
A +G+H+ +LSLG +P A++ ATSRG+LVVA++GN G GS++ A +
Sbjct: 112 AGNNGMHVANLSLGSPSPSAT-LEQAVN----SATSRGVLVVAASGNSG-AGSISYPARY 165
Query: 343 MFTIAASSTDRD 354
+A +TD++
Sbjct: 166 ANAMAVGATDQN 177
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + + A+FSS GP + DV APG++I + + ++ +
Sbjct: 171 YPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQST----LPGNKYGAYN 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTS A PHV G A LI + HP+W+ + ++S++ T T L G++F Y
Sbjct: 219 GTSXASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL---------------GDSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 19/116 (16%)
Query: 501 RVAAFSSKG--PNALNPEILKPDV--TAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVT 556
RVA +SS+G A + I + D+ +APG ++ + W +N +SGT MA PHV+
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG----GYNTISGTXMATPHVS 257
Query: 557 GIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAF--DYGSGF 610
G+A I A +PS S + ++S + + +VD KG G A DY SGF
Sbjct: 258 GLAAKIWAENPSLSNTQLRSNLQ---------ERAKSVDIKGGYGAAIGDDYASGF 304
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 217 RSPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGC-YDVD 275
S D +GHG+H A TA + YK DSG Y D
Sbjct: 63 NSCTDRNGHGTHVAGTA-------LADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYSDD 115
Query: 276 LLAAF----DDAIRDGVH-ILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNE 330
+ AA D A G I+S+SLG A S A++ +A S+G+L+VA+AGN
Sbjct: 116 IAAAIRHAADQATATGTKTIISMSLGSSANN-SLISSAVN----YAYSKGVLIVAAAGNS 170
Query: 331 G 331
G
Sbjct: 171 G 171
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ A + A+FSS G + DV APG++I + + +
Sbjct: 171 YPSTIAVGAVNSANQRASFSSAGS--------ELDVMAPGVSIQSTLPGGT----YGAYN 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHV G A LI + HP+W+ + ++ + +TAT L G++F Y
Sbjct: 219 GTSMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYL---------------GSSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 220 RDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGCYDVDLLAA 279
+D S HG+H A T +A +N + T SG Y ++
Sbjct: 59 QDGSSHGTHVAGT-----IAALNNSIGVLGVAPSASLYAVKVLDST--GSGQYSW-IING 110
Query: 280 FDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNL 339
+ AI + + ++++SLG P G S A+ A S GI+V A+AGNEG+ GS + +
Sbjct: 111 IEWAISNNMDVINMSLG--GPTG---STALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTV 165
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG+N+ + + + + L+GT MA PHV G A L+K +PSWS I++ +
Sbjct: 191 DIVAPGVNVQSTYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKN 246
Query: 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
TAT+L G+ YGSG +N
Sbjct: 247 TATSL---------------GSTNLYGSGLVN 263
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 316 ATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRD 354
ATSRG+LVVA++GN G GS++ A + +A +TD++
Sbjct: 140 ATSRGVLVVAASGNSG-AGSISYPARYANAMAVGATDQN 177
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG+N+ + + + + L+GT MA PHV G A L+K +PSWS I++ +
Sbjct: 191 DIVAPGVNVQSTYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKN 246
Query: 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
TAT+L G+ YGSG +N
Sbjct: 247 TATSL---------------GSTNLYGSGLVN 263
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGCYDVDLL 277
S +D +GHG+H A T A K SG + +
Sbjct: 55 STQDGNGHGTHVAGTIA---------ALDNSIGVLGVAPSAELYAVKVLGASGSGAISSI 105
Query: 278 A-AFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSV 336
A + A +G+H+ +LSLG +P A++ ATSRG+LVVA++GNEG GS+
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSAT-LEQAVN----SATSRGVLVVAASGNEG-AGSI 159
Query: 337 TNLAPWMFTIAASSTDRD 354
A + +A +TD++
Sbjct: 160 DYPARYANAMAVGATDQN 177
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG+N+ + + + + L+GT MA PHV G A L+K +PSWS I++ +
Sbjct: 191 DIVAPGVNVQSTYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKN 246
Query: 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
TAT+L G+ YGSG +N
Sbjct: 247 TATSL---------------GSTNLYGSGLVN 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 38/149 (25%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGCYDVDLL 277
S +D +GHG+H A T +A +N V ++ Y V +L
Sbjct: 55 STQDGNGHGTHVAGT-----IAALN---------------NSIGVLGVAPNAELYAVKVL 94
Query: 278 A------------AFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVA 325
+ A +G+H+ +LSLG +P A++ ATSRG+LVVA
Sbjct: 95 GASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSAT-LEQAVN----SATSRGVLVVA 149
Query: 326 SAGNEGNEGSVTNLAPWMFTIAASSTDRD 354
++GN G GS++ A + +A +TD++
Sbjct: 150 ASGNSG-AGSISYPARYANAMAVGATDQN 177
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG+N+ + + + + L+GT MA PHV G A L+K +PSWS I++ +
Sbjct: 191 DIVAPGVNVQSTYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKN 246
Query: 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
TAT+L G+ YGSG +N
Sbjct: 247 TATSL---------------GSTNLYGSGLVN 263
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 218 SPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGCYDVDLL 277
S +D +GHG+H A T A K SG + +
Sbjct: 55 STQDGNGHGTHVAGTIA---------ALDNSIGVLGVAPSAELYAVKVLGASGSGAISSI 105
Query: 278 A-AFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSV 336
A + A +G+H+ +LSLG +P A++ ATSRG+LVVA++GN G GS+
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSAT-LEQAVN----SATSRGVLVVAASGNSG-AGSI 159
Query: 337 TNLAPWMFTIAASSTDRD 354
+ A + +A +TD++
Sbjct: 160 SYPARYANAMAVGATDQN 177
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + A+FSS G + DV APG++I + + +
Sbjct: 171 YPSTIAVGAVNSSNQRASFSSAGS--------ELDVMAPGVSIQSTLPGGT----YGAYN 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT MA PHV G A LI + HP+W+ + ++ + +TAT L GN+F Y
Sbjct: 219 GTCMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYL---------------GNSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 220 RDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGCYDVDLLAA 279
+D S HG+H A T +A +N + T SG Y ++
Sbjct: 59 QDGSSHGTHVAGT-----IAALNNSIGVLGVSPSASLYAVKVLDST--GSGQYSW-IING 110
Query: 280 FDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNL 339
+ AI + + ++++SLG P G S A+ A S GI+V A+AGNEG+ GS + +
Sbjct: 111 IEWAISNNMDVINMSLG--GPTG---STALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTV 165
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 28/126 (22%)
Query: 488 FPAKTVLGS-EPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILS 546
+P+ +G+ + + A+FSS G + DV APG++I + + +
Sbjct: 171 YPSTIAVGAVNSSNQRASFSSVGS--------ELDVMAPGVSIQSTLPGGT----YGAYN 218
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GT MA PHV G A LI + HP+W+ + ++ + +TAT L GN+F Y
Sbjct: 219 GTXMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYL---------------GNSFYY 263
Query: 607 GSGFLN 612
G G +N
Sbjct: 264 GKGLIN 269
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 220 RDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKTCWDSGCYDVDLLAA 279
+D S HG+H A T +A +N + T SG Y ++
Sbjct: 59 QDGSSHGTHVAGT-----IAALNNSIGVLGVAPSASLYAVKVLDST--GSGQYSW-IING 110
Query: 280 FDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNL 339
+ AI + + ++++SLG P G S A+ A S GI+V A+AGNEG+ GS + +
Sbjct: 111 IEWAISNNMDVINMSLG--GPTG---STALKTVVDKAVSSGIVVAAAAGNEGSSGSTSTV 165
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG +I +AW + Q L+GTSMA PHV G+A L +PS +P+++ SAI+
Sbjct: 196 DLFAPGASIPSAWYTSDTATQ--TLNGTSMATPHVAGVAALYLEQNPSATPASVASAILN 253
Query: 581 TAT 583
AT
Sbjct: 254 GAT 256
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 503 AAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI 562
A+FSS G + +V APG + + + + L+GTSMA PHV G A LI
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP----TNTYATLNGTSMASPHVAGAAALI 233
Query: 563 KAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
+ HP+ S S +++ + +TAT L G++F YG G +N
Sbjct: 234 LSKHPNLSASQVRNRLSSTATYL---------------GSSFYYGKGLIN 268
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 503 AAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI 562
A+FSS G + +V APG + + + + L+GTSMA PHV G A LI
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP----TNTYATLNGTSMASPHVAGAAALI 233
Query: 563 KAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
+ HP+ S S +++ + +TAT L G++F YG G +N
Sbjct: 234 LSKHPNLSASQVRNRLSSTATYL---------------GSSFYYGKGLIN 268
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 503 AAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI 562
A+FSS G + +V APG + + + + L+GTSMA PHV G A LI
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP----TNTYATLNGTSMASPHVAGAAALI 233
Query: 563 KAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
+ HP+ S S +++ + +TAT L G++F YG G +N
Sbjct: 234 LSKHPNLSASQVRNRLSSTATYL---------------GSSFYYGKGLIN 268
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 503 AAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI 562
A+FSS G + +V APG + + + + L+GTSMA PHV G A LI
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTYP----TNTYATLNGTSMASPHVAGAAALI 234
Query: 563 KAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
+ HP+ S S +++ + +TAT L G++F YG G +N
Sbjct: 235 LSKHPNLSASQVRNRLSSTATYL---------------GSSFYYGKGLIN 269
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 503 AAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI 562
A+FSS G + +V APG + + + + L+GTSMA PHV G A LI
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTYP----TNTYATLNGTSMASPHVAGAAALI 234
Query: 563 KAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
+ HP+ S S +++ + +TAT L G++F YG G +N
Sbjct: 235 LSKHPNLSASQVRNRLSSTATYL---------------GSSFYYGKGLIN 269
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG +I ++W + N +SGTSMA PHV G+A L +P+ SP+ + + + T
Sbjct: 198 DIYAPGSSITSSWYTS--NSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKT 255
Query: 581 TATA 584
ATA
Sbjct: 256 RATA 259
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 503 AAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI 562
A+FSS G + +V APG + + + + L+GTSMA PHV G A LI
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP----TNTYATLNGTSMASPHVAGAAALI 233
Query: 563 KAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
+ HP+ S S +++ + +TAT L G++F YG G +N
Sbjct: 234 LSKHPNLSASQVRNRLSSTATYL---------------GSSFYYGKGLIN 268
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 27/110 (24%)
Query: 503 AAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI 562
A+FSS G + +V APG+++ + + + L+GTSMA PHV G A LI
Sbjct: 186 ASFSSVGS--------ELEVMAPGVSVYSTYP----SNTYTSLNGTSMASPHVAGAAALI 233
Query: 563 KAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
+ +P+ S S +++ + +TAT L G++F YG G +N
Sbjct: 234 LSKYPTLSASQVRNRLSSTATNL---------------GDSFYYGKGLIN 268
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 57/212 (26%)
Query: 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYE 205
N+ VG IDTGI + S +D+ KV+G ++SG
Sbjct: 25 NVKVGIIDTGI---ASSHTDL--------------------------KVVGGASFVSGE- 54
Query: 206 AEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYXXXXXXXXXXXXXXXXXXVYKT 265
S+ + D +GHG+H A T VA ++ + +
Sbjct: 55 ---------SYNT--DGNGHGTHVAGT-----VAALDNTTGVLGVAPNVSLYAIKVLNSS 98
Query: 266 CWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVA 325
SG Y +++ + A ++G+ ++++SLG P G S A+ A + GI+VVA
Sbjct: 99 G--SGSYSA-IVSGIEWATQNGLDVINMSLG--GPSG---STALKQAVDKAYASGIVVVA 150
Query: 326 SAGNEGNEGSVTNL---APWMFTIAASSTDRD 354
+AGN GN GS + A + IA + D +
Sbjct: 151 AAGNSGNSGSQNTIGYPAKYDSVIAVGAVDSN 182
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 503 AAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI 562
A+FSS G + +V APG + + + + L+GT MA PHV G A LI
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP----TNTYATLNGTXMASPHVAGAAALI 233
Query: 563 KAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLN 612
+ HP+ S S +++ + +TAT L G++F YG G +N
Sbjct: 234 LSKHPNLSASQVRNRLSSTATYL---------------GSSFYYGKGLIN 268
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 467 KKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEIL--KPDVTA 524
++ GN+ SY S K AK + + +S P NP ++ D+T
Sbjct: 280 ERVGNQGSSYPEINSTKACKTAGAKGI--------IVYSNSALPGLQNPFLVDANSDITV 331
Query: 525 PGLNIIAAWSPAV-------------GKMQFNILSGTSMACPHVTGIATLIKAVHPSWSP 571
P +++ A A+ G + +GTSMA PHV+G+ATL+ + HP S
Sbjct: 332 PSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSA 391
Query: 572 SAIKSAIMTTATAL 585
S +++A+ TA L
Sbjct: 392 SQVRAALNATADDL 405
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 501 RVAAFSSKG--PNALNPEILKPDV--TAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVT 556
RVA FSS+G A + I K DV +APG + + W + +SGTSMA PH
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDG----GYATISGTSMASPHAA 256
Query: 557 GIATLIKAVHPSWSPSAIKSAIMTTATALD 586
G+A I A P+ S ++ + T A+ D
Sbjct: 257 GLAAKIWAQSPAASNVDVRGELQTRASVND 286
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 14/66 (21%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ +P+V+APG++I++ + + L GT+MA PHV+G+
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTYP----DDSYETLMGTAMATPHVSGVVA 255
Query: 561 LIKAVH 566
LI+A +
Sbjct: 256 LIQAAY 261
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 282 DAIRDGVHILSLSLGPEAPQGD-YFSDAISIGSFHATSRGILVVASAGNEG 331
D D ++S+SLG P D Y D I A + GI++VA++GNEG
Sbjct: 142 DPDDDAAEVISMSLG--GPADDSYLYDMI----IQAYNAGIVIVAASGNEG 186
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 14/66 (21%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ +P+V+APG++I++ + + L GT+MA PHV+G+
Sbjct: 212 NIASFSNR----------QPEVSAPGVDILSTYP----DDSYETLMGTAMATPHVSGVVA 257
Query: 561 LIKAVH 566
LI+A +
Sbjct: 258 LIQAAY 263
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 282 DAIRDGVHILSLSLGPEAPQGD-YFSDAISIGSFHATSRGILVVASAGNEG 331
D D ++S+SLG P D Y D I A + GI++VA++GNEG
Sbjct: 144 DPDDDAAEVISMSLG--GPADDSYLYDMI----IQAYNAGIVIVAASGNEG 188
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 14/66 (21%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ +P+V+APG++I++ + + L GT+MA PHV+G+
Sbjct: 221 NIASFSNR----------QPEVSAPGVDILSTYP----DDSYETLMGTAMATPHVSGVVA 266
Query: 561 LIKAVH 566
LI+A +
Sbjct: 267 LIQAAY 272
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 282 DAIRDGVHILSLSLGPEAPQGD-YFSDAISIGSFHATSRGILVVASAGNEG 331
D D ++S+SLG P D Y D I A + GI++VA++GNEG
Sbjct: 153 DPDDDAAEVISMSLG--GPADDSYLYDMI----IQAYNAGIVIVAASGNEG 197
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 14/66 (21%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ +P+V+APG++I++ + + L GT+MA PHV+G+
Sbjct: 221 NIASFSNR----------QPEVSAPGVDILSTYP----DDSYETLMGTAMATPHVSGVVA 266
Query: 561 LIKAVH 566
LI+A +
Sbjct: 267 LIQAAY 272
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 282 DAIRDGVHILSLSLGPEAPQGD-YFSDAISIGSFHATSRGILVVASAGNEG 331
D D ++S+SLG P D Y D I A + GI++VA++GNEG
Sbjct: 153 DPDDDAAEVISMSLG--GPADDSYLYDMI----IQAYNAGIVIVAASGNEG 197
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 14/66 (21%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ +P+V+APG++I++ + + L GT+MA PHV+G+
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYP----DDSYETLMGTAMATPHVSGVVA 335
Query: 561 LIKAVH 566
LI+A +
Sbjct: 336 LIQAAY 341
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 282 DAIRDGVHILSLSLGPEAPQGD-YFSDAISIGSFHATSRGILVVASAGNEG 331
D D ++S+SLG P D Y D I A + GI++VA++GNEG
Sbjct: 222 DPDDDAAEVISMSLG--GPADDSYLYDMI----IQAYNAGIVIVAASGNEG 266
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 14/66 (21%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ +P+V+APG++I++ + + L GT+MA PHV+G+
Sbjct: 287 NIASFSNR----------QPEVSAPGVDILSTYP----DDSYETLMGTAMATPHVSGVVA 332
Query: 561 LIKAVH 566
LI+A +
Sbjct: 333 LIQAAY 338
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 282 DAIRDGVHILSLSLGPEAPQGD-YFSDAISIGSFHATSRGILVVASAGNEG 331
D D ++S+SLG P D Y D I A + GI++VA++GNEG
Sbjct: 219 DPDDDAAEVISMSLG--GPADDSYLYDMI----IQAYNAGIVIVAASGNEG 263
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 14/66 (21%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ +P+V+APG++I++ + + L GT+MA PHV+G+
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYP----DDSYETLMGTAMATPHVSGVVA 335
Query: 561 LIKAVH 566
LI+A +
Sbjct: 336 LIQAAY 341
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 282 DAIRDGVHILSLSLGPEAPQGD-YFSDAISIGSFHATSRGILVVASAGNEG 331
D D ++S+SLG P D Y D I A + GI++VA++GNEG
Sbjct: 222 DPDDDAAEVISMSLG--GPADDSYLYDMI----IQAYNAGIVIVAASGNEG 266
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 14/66 (21%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ +P+V+APG++I++ + + L GT+MA PHV+G+
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYP----DDSYETLMGTAMATPHVSGVVA 335
Query: 561 LIKAVH 566
LI+A +
Sbjct: 336 LIQAAY 341
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 282 DAIRDGVHILSLSLGPEAPQGD-YFSDAISIGSFHATSRGILVVASAGNEG 331
D D ++S+SLG P D Y D I A + GI++VA++GNEG
Sbjct: 222 DPDADAAEVISMSLG--GPADDSYLYDMI----IQAYNAGIVIVAASGNEG 266
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 14/66 (21%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ +P+V+APG++I++ + + L GT+MA PHV+G+
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYP----DDSYETLMGTAMATPHVSGVVA 335
Query: 561 LIKAVH 566
LI+A +
Sbjct: 336 LIQAAY 341
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 14/66 (21%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ +P+V+APG++I++ + + L GT MA PHV+G+
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTYP----DDSYETLMGTXMATPHVSGVVA 255
Query: 561 LIKAVH 566
LI+A +
Sbjct: 256 LIQAAY 261
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 282 DAIRDGVHILSLSLGPEAPQGD-YFSDAISIGSFHATSRGILVVASAGNEG 331
D D ++S+SLG P D Y D I A + GI++VA++GNEG
Sbjct: 142 DPDDDAAEVISMSLG--GPADDSYLYDMI----IQAYNAGIVIVAASGNEG 186
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 20/130 (15%)
Query: 522 VTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATL----IKAVHPSWSPSAIKSA 577
V APG I A P + + +GTS A PHV G L +K + +SP +IK A
Sbjct: 437 VCAPGGAI--ASVPQFTXSKSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRA 494
Query: 578 IMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLSPGLIYDAQPIDYTVFLCSI 637
I TAT L VDP F G G LN K + + F +
Sbjct: 495 ISVTATKLG------YVDP-------FAQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRV 541
Query: 638 GYD-EKSLHL 646
G + +K +HL
Sbjct: 542 GNNADKGIHL 551
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 14/66 (21%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
+A+FS++ +P+V+APG++I++ + + L GT MA PHV+G+
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTYP----DDSYETLMGTCMATPHVSGVVA 255
Query: 561 LIKAVH 566
LI+A +
Sbjct: 256 LIQAAY 261
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 282 DAIRDGVHILSLSLGPEAPQGD-YFSDAISIGSFHATSRGILVVASAGNEG 331
D D ++S+SLG P D Y D I A + GI++VA++GNEG
Sbjct: 142 DPDDDAAEVISMSLG--GPADDSYLYDMI----IQAYNAGIVIVAASGNEG 186
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 36/124 (29%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWS--------------PAVGKMQFNILS 546
RVA FSS+ V APG+ I++ PA ++
Sbjct: 327 RVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQ 378
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTSMA PHVTG+ ++ P+ P I+ + TA D N GN +D+
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRK--LLENTAFDFN------------GNGWDH 424
Query: 607 GSGF 610
+G+
Sbjct: 425 DTGY 428
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 521 DVTAPGLNIIAAWSPAVGK---MQFNILSGTSMACPHVTGIATLI----KAVHPSWSPSA 573
D+ APG +I++ + ++ ++GTSMA PHV+G+A L+ +V+ + +P+
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAE 304
Query: 574 IKSAIMTTAT 583
+K +++T +
Sbjct: 305 LKDVLVSTTS 314
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 521 DVTAPGLNIIAAWSPAVGK---MQFNILSGTSMACPHVTGIATLI----KAVHPSWSPSA 573
D+ APG +I++ + ++ ++GTSMA PHV+G+A L+ +V+ + +P+
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAE 304
Query: 574 IKSAIMTTAT 583
+K +++T +
Sbjct: 305 LKDVLVSTTS 314
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 12/62 (19%)
Query: 501 RVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIAT 560
R+A+FS+ G DV APG++I++ + ++ +SGTSMA PHV G+A
Sbjct: 190 RLASFSNYGT--------WVDVVAPGVDIVST----ITGNRYAYMSGTSMASPHVAGLAA 237
Query: 561 LI 562
L+
Sbjct: 238 LL 239
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 521 DVTAPGLNIIAAWSPAVGK---MQFNILSGTSMACPHVTGIATLI----KAVHPSWSPSA 573
D+ APG +I++ + ++ ++GTSMA PHV+G+A L+ +V+ + +P+
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAE 304
Query: 574 IKSAIMTTAT 583
+K +++T +
Sbjct: 305 LKDVLVSTTS 314
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMA 551
TV S+ R ++FS+ G +L D+ PG +I++ W +G +I SGTSMA
Sbjct: 179 TVGASDRYDRRSSFSNYG------SVL--DIFGPGTDILSTW---IGGSTRSI-SGTSMA 226
Query: 552 CPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPI 592
PHV G+A + + + + SA + I TA D ++ P
Sbjct: 227 TPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSNIPF 266
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
D+ APG NI++ W +G N +SGTSMA PH+ G+ + + A+ I T
Sbjct: 203 DIFAPGSNILSTW---IGGTT-NTISGTSMATPHIVGLGAYLAGLEGFPGAQALCKRIQT 258
Query: 581 TAT 583
+T
Sbjct: 259 LST 261
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
DV APG +I + + + + LSGTSMA PHV G+A L+ + S S I++AI
Sbjct: 201 DVAAPGSSIYSTYPTST----YASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIEN 254
Query: 581 TATALDKNHKPITVDPKGR 599
TA DK T KGR
Sbjct: 255 TA---DKISGTGTYWAKGR 270
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMA 551
TV S+ R ++FS+ G +L D+ PG +I++ W +G +I SGTSMA
Sbjct: 179 TVGASDRYDRRSSFSNYG------SVL--DIFGPGTSILSTW---IGGSTRSI-SGTSMA 226
Query: 552 CPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPI 592
PHV G+A + + + + SA + I TA D ++ P
Sbjct: 227 TPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSNIPF 266
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 492 TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMA 551
TV S+ R ++FS+ G +L D+ PG +I++ W +G +I SGTSMA
Sbjct: 179 TVGASDRYDRRSSFSNYG------SVL--DIFGPGTSILSTW---IGGSTRSI-SGTSMA 226
Query: 552 CPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPI 592
PHV G+A + + + + SA + I TA D ++ P
Sbjct: 227 TPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSNIPF 266
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 502 VAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSP--------AVGKMQFNILSGTSMACP 553
VA FSS+GP +KPDV APG I++A S A ++ + GTSMA P
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATP 259
Query: 554 HVTG-IATL----IKAVHPSWSPSAIKSAIMTTA 582
V G +A L +K + PS +K+A++ A
Sbjct: 260 IVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580
DV APG I + + + + LSGTSMA PHV G+A L+ + S S I++AI
Sbjct: 201 DVAAPGSWIYSTYPTST----YASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIEN 254
Query: 581 TATALDKNHKPITVDPKGR 599
TA DK T KGR
Sbjct: 255 TA---DKISGTGTYWAKGR 270
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI 562
D+ APG +I + W +G + N +SGTSMA PH+ G+A +
Sbjct: 201 DIFAPGTSITSTW---IGG-RTNTISGTSMATPHIAGLAAYL 238
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATL 561
D+ APG I +AW + +SGTSMA PHV G+A L
Sbjct: 196 DLFAPGSQIKSAWYDG----GYKTISGTSMATPHVAGVAAL 232
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 24/131 (18%)
Query: 470 GNKILSYISHTSKAISKIFPAK-----TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTA 524
G I+ + ++ S+ +P+ +V + P + A FS+ G + + A
Sbjct: 198 GALIVIAAGNENQDASRTWPSSCNNVLSVGATTPKGKRAPFSNYG--------ARVHLAA 249
Query: 525 PGLNIIAAWSPAVG-----KMQFNILSGTSMACPHVTGIATLI----KAVHPSWSPSAIK 575
PG NI++ + VG + + + +GTSMA PHV+G+A L+ ++ + +PS +
Sbjct: 250 PGTNILS--TIDVGQAGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELS 307
Query: 576 SAIMTTATALD 586
++ T + +
Sbjct: 308 DILVRTTSRFN 318
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 24/131 (18%)
Query: 470 GNKILSYISHTSKAISKIFPAK-----TVLGSEPAPRVAAFSSKGPNALNPEILKPDVTA 524
G I+ + ++ S+ +P+ +V + P + A FS+ G + + A
Sbjct: 198 GALIVIAAGNENQDASRTWPSSCNNVLSVGATTPKGKRAPFSNYG--------ARVHLAA 249
Query: 525 PGLNIIAAWSPAVG-----KMQFNILSGTSMACPHVTGIATLI----KAVHPSWSPSAIK 575
PG NI++ + VG + + + +GTSMA PHV+G+A L+ ++ + +PS +
Sbjct: 250 PGTNILS--TIDVGQAGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELS 307
Query: 576 SAIMTTATALD 586
++ T + +
Sbjct: 308 DILVRTTSRFN 318
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 519 KPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVH----PSWSPSAI 574
K + APG +I+ A P G ++ LSGTS A P V+G+A L+ ++ P +
Sbjct: 198 KQGILAPGKDILGA-KPNGGTIR---LSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKV 253
Query: 575 KSAIMTTAT 583
K+A++ +AT
Sbjct: 254 KNALLASAT 262
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 15/94 (15%)
Query: 502 VAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSP--------AVGKMQFNILSGTSMACP 553
VA FSS+GP +KPDV APG I++A S A ++ GTS A P
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYXGGTSXATP 259
Query: 554 HVTG-IATL----IKAVHPSWSPSAIKSAIMTTA 582
V G +A L +K + PS +K+A++ A
Sbjct: 260 IVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 514 NPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI-----KAVHPS 568
N EI D+ APG+ I + + + + LSGT+MA PHV G LI A S
Sbjct: 222 NEEI---DIVAPGVGIKSTYLDS----GYAELSGTAMAAPHVAGALALIINLAEDAFKRS 274
Query: 569 WSPSAIKSAIMTTAT 583
S + I + ++ AT
Sbjct: 275 LSETEIYAQLVRRAT 289
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 514 NPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI-----KAVHPS 568
N EI D+ APG+ I + + + + LSGT+MA PHV G LI A S
Sbjct: 222 NEEI---DIVAPGVGIKSTYLDS----GYAELSGTAMAAPHVAGALALIINLAEDAFKRS 274
Query: 569 WSPSAIKSAIMTTAT 583
S + I + ++ AT
Sbjct: 275 LSETEIYAQLVRRAT 289
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 514 NPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI-----KAVHPS 568
N EI D+ APG+ I + + + + LSGT+MA PHV G LI A S
Sbjct: 222 NEEI---DIVAPGVGIKSTYLDS----GYAELSGTAMAAPHVAGALALIINLAEDAFKRS 274
Query: 569 WSPSAIKSAIMTTAT 583
S + I + ++ AT
Sbjct: 275 LSETEIYAQLVRRAT 289
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 514 NPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLI-----KAVHPS 568
N EI D+ APG+ I + + + + LSGT+MA PHV G LI A S
Sbjct: 204 NEEI---DIVAPGVGIKSTYLDS----GYAELSGTAMAAPHVAGALALIINLAEDAFKRS 256
Query: 569 WSPSAIKSAIMTTAT 583
S + I + ++ AT
Sbjct: 257 LSETEIYAQLVRRAT 271
>pdb|2ZM0|A Chain A, Structure Of 6-Aminohexanoate-Dimer Hydrolase,
G181dH266ND370Y Mutant
Length = 392
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 42 YMGTTTGEDPLDVWRQ-HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI 100
Y G GE LD W++ H A H G M + A + + + +
Sbjct: 13 YPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAA------------VSRRPVNAPGHAL 60
Query: 101 AQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
A++ + + P++++RL T++ F+ L G E
Sbjct: 61 ARLGAIAAQLPDLEQRLEQTYTDAFLVLRGTE 92
>pdb|2ZMA|A Chain A, Crystal Structure Of 6-Aminohexanoate-Dimer Hydrolase
S112aG181DH266ND370Y MUTANT WITH SUBSTRATE
pdb|3A66|A Chain A, Crystal Structure Of 6-Aminohexanoate-Dimer Hydrolase
S112aG181DH266ND370Y MUTANT WITH SUBSTRATE
Length = 392
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 42 YMGTTTGEDPLDVWRQ-HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI 100
Y G GE LD W++ H A H G M + A + + + +
Sbjct: 13 YPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAA------------VSRRPVNAPGHAL 60
Query: 101 AQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
A++ + + P++++RL T++ F+ L G E
Sbjct: 61 ARLGAIAAQLPDLEQRLEQTYTDAFLVLRGTE 92
>pdb|1WYC|A Chain A, Structure Of 6-Aminohexanoate-Dimer Hydrolase, Dn Mutant
Length = 392
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 42 YMGTTTGEDPLDVWRQ-HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI 100
Y G GE LD W++ H A H G M + A + + + +
Sbjct: 13 YPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAA------------VSRRPVNAPGHAL 60
Query: 101 AQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
A++ + + P++++RL T++ F+ L G E
Sbjct: 61 ARLGAIAAQLPDLEQRLEQTYTDAFLVLRGTE 92
>pdb|2DCF|A Chain A, Crystal Structure Of 6-Aminohexanoate-Dimer Hydrolase
S112aG181DH266N MUTANT WITH SUBSTRATE
pdb|3A65|A Chain A, Crystal Structure Of 6-Aminohexanoate-Dimer Hydrolase
S112aG181DH266N MUTANT WITH SUBSTRATE
Length = 392
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 42 YMGTTTGEDPLDVWRQ-HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI 100
Y G GE LD W++ H A H G M + A + + + +
Sbjct: 13 YPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAA------------VSRRPVNAPGHAL 60
Query: 101 AQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
A++ + + P++++RL T++ F+ L G E
Sbjct: 61 ARLGAIAAQLPDLEQRLEQTYTDAFLVLRGTE 92
>pdb|2ZLY|A Chain A, Structure Of 6-Aminohexanoate-Dimer Hydrolase, D370y
Mutant
Length = 392
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 42 YMGTTTGEDPLDVWRQ-HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI 100
Y G GE LD W++ H A H G M + A + + + +
Sbjct: 13 YPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAA------------VSRRPVNAPGHAL 60
Query: 101 AQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
A++ + + P++++RL T++ F+ L G E
Sbjct: 61 ARLGAIAAQLPDLEQRLEQTYTDAFLVLRGTE 92
>pdb|2ZM8|A Chain A, Structure Of 6-Aminohexanoate-Dimer Hydrolase, S112aD370Y
MUTANT Complexed With 6-Aminohexanoate-Dimer
Length = 392
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 42 YMGTTTGEDPLDVWRQ-HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI 100
Y G GE LD W++ H A H G M + A + + + +
Sbjct: 13 YPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAA------------VSRRPVNAPGHAL 60
Query: 101 AQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
A++ + + P++++RL T++ F+ L G E
Sbjct: 61 ARLGAIAAQLPDLEQRLEQTYTDAFLVLRGTE 92
>pdb|2E8I|A Chain A, Structure Of 6-Aminohexanoate-Dimer Hydrolase, D1 Mutant
Length = 392
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 42 YMGTTTGEDPLDVWRQ-HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI 100
Y G GE LD W++ H A H G M + A + + + +
Sbjct: 13 YPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAA------------VSRRPVNAPGHAL 60
Query: 101 AQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
A++ + + P++++RL T++ F+ L G E
Sbjct: 61 ARLGAIAAQLPDLEQRLEQTYTDAFLVLRGTE 92
>pdb|1WYB|A Chain A, Structure Of 6-aminohexanoate-dimer Hydrolase
Length = 392
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 42 YMGTTTGEDPLDVWRQ-HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI 100
Y G GE LD W++ H A H G M + A + + + +
Sbjct: 13 YPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAA------------VSRRPVNAPGHAL 60
Query: 101 AQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
A++ + + P++++RL T++ F+ L G E
Sbjct: 61 ARLGAIAAQLPDLEQRLEQTYTDAFLVLRGTE 92
>pdb|2ZM7|A Chain A, Structure Of 6-Aminohexanoate-Dimer Hydrolase, S112aG181D
MUTANT Complexed With 6-Aminohexanoate-Dimer
Length = 392
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 42 YMGTTTGEDPLDVWRQ-HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI 100
Y G GE LD W++ H A H G M + A + + + +
Sbjct: 13 YPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAA------------VSRRPVNAPGHAL 60
Query: 101 AQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
A++ + + P++++RL T++ F+ L G E
Sbjct: 61 ARLGAIAAQLPDLEQRLEQTYTDAFLVLRGTE 92
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 519 KPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSW----SPSAI 574
K + APG I+ A ++ L+GTSMA P +TGI+ L+ ++ A+
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVR---LTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAV 321
Query: 575 KSAIMTTATALD 586
++A++ TA D
Sbjct: 322 RTALLKTAIPCD 333
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 519 KPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSW----SPSAI 574
K + APG I+ A ++ L+GTSMA P +TGI+ L+ ++ A+
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVR---LTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAV 321
Query: 575 KSAIMTTATALD 586
++A++ TA D
Sbjct: 322 RTALLKTAIPCD 333
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 519 KPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSW----SPSAI 574
K + APG I+ A ++ L+GTSMA P +TGI+ L+ ++ A+
Sbjct: 247 KEGILAPGEEILGAQPCTEEPVR---LTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAV 303
Query: 575 KSAIMTTATALD 586
++A++ TA D
Sbjct: 304 RTALLKTAIPCD 315
>pdb|2ZM2|A Chain A, Structure Of 6-aminohexanoate-dimer Hydrolase,
A61v/a124v/r187s/f264c/g291r/g338a/d370y Mutant
(hyb-s4m94)
Length = 392
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 42 YMGTTTGEDPLDVWRQ-HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI 100
Y G GE LD W++ H A H G M + A + + + +
Sbjct: 13 YPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAA------------VSRRPVNAPGHAL 60
Query: 101 AQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
++ + + P++++RL T++ F+ L G E
Sbjct: 61 VRLGAIAAQLPDLEQRLEQTYTDAFLVLRGTE 92
>pdb|2ZM9|A Chain A, Structure Of 6-Aminohexanoate-Dimer Hydrolase,
A61vS112AA124VR187SF264CG291RG338AD370Y MUTANT
(HYB-S4m94) With Substrate
Length = 392
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 42 YMGTTTGEDPLDVWRQ-HHQMLAVVHAGSMEQAQASHVYSYKHGFRGFAAKLTDQQASQI 100
Y G GE LD W++ H A H G M + A + + + +
Sbjct: 13 YPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAA------------VSRRPVNAPGHAL 60
Query: 101 AQMPGVVSVFPNMKRRLHTTHSWDFMGLMGEE 132
++ + + P++++RL T++ F+ L G E
Sbjct: 61 VRLGAIAAQLPDLEQRLEQTYTDAFLVLRGTE 92
>pdb|3K1Q|B Chain B, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1027
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 543 NILSGTSMACPHVTGIATLIKAVHP-SWSPSAIKSAIMTTATALDKNHKPIT-----VDP 596
NI S T+ A P V ++TL+++V P P+ + +AI T + + + PI+ + P
Sbjct: 274 NISSNTAAALPLVEALSTLLRSVTPLVLDPTVLTNAITTISESTTQTISPISEILRLLQP 333
Query: 597 KGRRGNAF 604
G AF
Sbjct: 334 MGNDYAAF 341
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 543 NILSGTSMACPHVTGIATLIKAVHP-SWSPSAIKSAIMTTATALDKNHKPIT-----VDP 596
NI S T+ A P V ++TL+++V P P+ + +AI T + + + PI+ + P
Sbjct: 443 NISSNTAAALPLVEALSTLLRSVTPLVLDPTVLTNAITTISESTTQTISPISEILRLLQP 502
Query: 597 KGRRGNAF 604
G AF
Sbjct: 503 MGNDYAAF 510
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 543 NILSGTSMACPHVTGIATLIKAVHP-SWSPSAIKSAIMTTATALDKNHKPIT-----VDP 596
NI S T+ A P V ++TL+++V P P+ + +AI T + + + PI+ + P
Sbjct: 461 NISSNTAAALPLVEALSTLLRSVTPLVLDPTVLTNAITTISESTTQTISPISEILRLLQP 520
Query: 597 KGRRGNAF 604
G AF
Sbjct: 521 MGNDYAAF 528
>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
Length = 481
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 547 GTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606
GTS A P G+ TL+ +P+ + ++ + +A L+KN D + + Y
Sbjct: 263 GTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRY 322
Query: 607 GSGFLNPRKVL 617
G G ++ K++
Sbjct: 323 GFGKIDAHKLI 333
>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
Length = 503
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 543 NILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGN 602
N GTS A P G+ TL+ +P+ + ++ + +A L+KN D +
Sbjct: 266 NSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKY 325
Query: 603 AFDYGSGFLNPRKVL 617
+ YG G ++ K++
Sbjct: 326 SHRYGFGKIDAHKLI 340
>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
pdb|1OT5|B Chain B, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
Length = 477
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 543 NILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGN 602
N GTS A P G+ TL+ +P+ + ++ + +A L+KN D +
Sbjct: 257 NSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKY 316
Query: 603 AFDYGSGFLNPRKVL 617
+ YG G ++ K++
Sbjct: 317 SHRYGFGKIDAHKLI 331
>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
pdb|2VRE|B Chain B, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
pdb|2VRE|C Chain C, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
Length = 296
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 469 TGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEIL-----KPDVT 523
T K+++ + S +S++FP K V+ A SSK P A+ + +
Sbjct: 202 TARKMMADEALGSGLVSRVFPDKEVMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSV 261
Query: 524 APGLNIIAAWSPAVGKMQ 541
A LN +A+W+ ++ + Q
Sbjct: 262 AESLNYVASWNMSMLQTQ 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,575,568
Number of Sequences: 62578
Number of extensions: 918289
Number of successful extensions: 2233
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1914
Number of HSP's gapped (non-prelim): 307
length of query: 768
length of database: 14,973,337
effective HSP length: 106
effective length of query: 662
effective length of database: 8,340,069
effective search space: 5521125678
effective search space used: 5521125678
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)