Query 004205
Match_columns 768
No_of_seqs 479 out of 3108
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 19:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.8E-52 4E-57 450.1 29.7 299 115-583 1-307 (307)
2 cd07478 Peptidases_S8_CspA-lik 100.0 7.2E-51 1.6E-55 455.4 21.6 412 142-609 2-455 (455)
3 PTZ00262 subtilisin-like prote 100.0 1.9E-50 4.1E-55 450.8 23.8 300 123-623 293-618 (639)
4 cd05562 Peptidases_S53_like Pe 100.0 1E-48 2.2E-53 411.4 23.6 270 140-618 1-274 (275)
5 cd07479 Peptidases_S8_SKI-1_li 100.0 9.3E-49 2E-53 408.7 23.0 241 137-585 1-253 (255)
6 cd07497 Peptidases_S8_14 Pepti 100.0 2E-48 4.3E-53 415.2 24.4 281 144-582 1-311 (311)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 6.3E-48 1.4E-52 422.4 27.8 312 135-618 1-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 8.2E-47 1.8E-51 407.3 26.4 293 133-620 2-300 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 4.3E-46 9.4E-51 390.5 23.7 245 136-586 2-253 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 2.6E-45 5.7E-50 393.0 28.2 287 144-616 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 1.2E-45 2.7E-50 393.0 25.5 267 145-583 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 1.1E-45 2.3E-50 382.2 22.8 233 147-609 1-239 (239)
13 KOG1153 Subtilisin-related pro 100.0 4.5E-46 9.7E-51 387.2 19.8 333 32-585 76-463 (501)
14 cd07481 Peptidases_S8_Bacillop 100.0 1.7E-44 3.7E-49 379.9 24.5 246 144-583 1-264 (264)
15 cd07493 Peptidases_S8_9 Peptid 100.0 4.3E-44 9.2E-49 376.4 25.0 244 146-583 1-261 (261)
16 cd04857 Peptidases_S8_Tripepti 100.0 2E-43 4.4E-48 383.3 27.7 218 220-584 182-411 (412)
17 cd07487 Peptidases_S8_1 Peptid 100.0 1.7E-43 3.7E-48 372.7 25.1 251 144-583 1-264 (264)
18 cd07485 Peptidases_S8_Fervidol 100.0 1.5E-43 3.2E-48 374.7 23.0 260 135-581 1-273 (273)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 2.5E-43 5.5E-48 369.4 24.5 231 136-584 17-255 (255)
20 cd04847 Peptidases_S8_Subtilis 100.0 1.7E-43 3.7E-48 377.7 20.5 254 148-583 2-291 (291)
21 cd07484 Peptidases_S8_Thermita 100.0 7E-43 1.5E-47 367.2 24.0 248 125-585 10-259 (260)
22 cd07490 Peptidases_S8_6 Peptid 100.0 1.3E-42 2.7E-47 364.0 23.8 252 146-583 1-254 (254)
23 cd07494 Peptidases_S8_10 Pepti 100.0 3.4E-42 7.4E-47 366.5 24.4 248 131-585 8-285 (298)
24 cd07496 Peptidases_S8_13 Pepti 100.0 2.8E-42 6E-47 367.3 22.6 197 218-581 66-285 (285)
25 cd07498 Peptidases_S8_15 Pepti 100.0 9.9E-42 2.1E-46 354.6 21.7 234 147-581 1-242 (242)
26 cd04842 Peptidases_S8_Kp43_pro 100.0 2.3E-41 4.9E-46 362.2 24.7 271 139-583 2-293 (293)
27 cd07480 Peptidases_S8_12 Pepti 100.0 3.3E-41 7.2E-46 360.8 24.0 265 138-614 2-296 (297)
28 cd04843 Peptidases_S8_11 Pepti 100.0 2.7E-41 5.8E-46 355.6 21.4 241 132-583 3-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 1.8E-40 3.8E-45 348.8 24.8 250 145-583 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 1.3E-40 2.7E-45 343.3 22.8 225 146-581 1-229 (229)
31 PF00082 Peptidase_S8: Subtila 100.0 5.5E-41 1.2E-45 357.1 16.9 276 148-618 1-282 (282)
32 cd07491 Peptidases_S8_7 Peptid 100.0 1.8E-40 4E-45 343.7 18.8 215 145-565 3-229 (247)
33 cd04059 Peptidases_S8_Protein_ 100.0 3.4E-40 7.4E-45 353.7 19.7 251 131-583 26-297 (297)
34 cd07482 Peptidases_S8_Lantibio 100.0 8E-40 1.7E-44 350.4 22.2 149 146-332 1-157 (294)
35 cd07492 Peptidases_S8_8 Peptid 100.0 7.6E-39 1.7E-43 328.4 22.4 221 146-583 1-222 (222)
36 KOG4266 Subtilisin kexin isozy 100.0 1.5E-37 3.2E-42 331.2 24.9 355 36-618 49-465 (1033)
37 cd04848 Peptidases_S8_Autotran 100.0 6.7E-38 1.4E-42 330.4 21.6 243 142-583 1-267 (267)
38 KOG1114 Tripeptidyl peptidase 100.0 6.9E-33 1.5E-37 308.0 24.0 358 222-758 309-687 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 3.7E-33 8E-38 288.1 14.4 195 219-581 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 2.3E-31 5.1E-36 274.9 22.6 195 218-581 39-241 (241)
41 KOG3526 Subtilisin-like propro 99.9 1.3E-26 2.7E-31 235.7 8.2 418 17-638 12-474 (629)
42 COG1404 AprE Subtilisin-like s 99.9 1.5E-23 3.2E-28 240.5 23.1 274 131-618 127-420 (508)
43 cd04056 Peptidases_S53 Peptida 99.7 3.3E-17 7.1E-22 179.7 15.9 101 250-353 82-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.2 1.6E-10 3.4E-15 109.8 10.4 109 396-512 30-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.1 7.3E-10 1.6E-14 102.9 11.4 115 359-486 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.8 8.7E-09 1.9E-13 87.9 8.0 78 38-118 1-82 (82)
47 PF06280 DUF1034: Fn3-like dom 98.8 4.6E-08 1E-12 88.8 12.4 87 669-756 1-112 (112)
48 cd04816 PA_SaNapH_like PA_SaNa 98.7 1.1E-07 2.5E-12 87.6 10.4 84 399-485 29-120 (122)
49 cd02122 PA_GRAIL_like PA _GRAI 98.6 1.9E-07 4.2E-12 87.5 10.4 86 398-486 43-137 (138)
50 KOG3525 Subtilisin-like propro 98.6 9.5E-07 2.1E-11 98.2 17.1 158 132-332 21-186 (431)
51 cd02129 PA_hSPPL_like PA_hSPPL 98.6 2.2E-07 4.7E-12 84.3 9.2 79 398-479 29-114 (120)
52 cd02127 PA_hPAP21_like PA_hPAP 98.6 3.6E-07 7.7E-12 83.3 10.7 85 399-487 21-116 (118)
53 PF02225 PA: PA domain; Inter 98.6 8.8E-08 1.9E-12 85.1 6.4 78 397-477 17-101 (101)
54 cd02130 PA_ScAPY_like PA_ScAPY 98.5 6.8E-07 1.5E-11 82.5 10.1 84 399-486 31-121 (122)
55 cd04818 PA_subtilisin_1 PA_sub 98.5 7.7E-07 1.7E-11 81.6 10.1 85 397-485 25-116 (118)
56 cd02126 PA_EDEM3_like PA_EDEM3 98.5 8.1E-07 1.7E-11 82.3 9.7 83 399-485 27-124 (126)
57 COG4934 Predicted protease [Po 98.5 1.3E-06 2.8E-11 104.2 13.4 97 249-348 286-395 (1174)
58 cd04817 PA_VapT_like PA_VapT_l 98.4 1.1E-06 2.3E-11 82.1 9.4 72 406-480 49-134 (139)
59 cd02132 PA_GO-like PA_GO-like: 98.4 1.2E-06 2.6E-11 82.6 9.6 81 399-485 48-137 (139)
60 cd00538 PA PA: Protease-associ 98.4 1.3E-06 2.7E-11 81.0 9.6 85 397-484 28-123 (126)
61 cd02124 PA_PoS1_like PA_PoS1_l 98.4 1.5E-06 3.3E-11 80.5 10.0 84 398-485 40-127 (129)
62 cd02125 PA_VSR PA_VSR: Proteas 98.4 1.6E-06 3.4E-11 80.2 10.0 85 399-486 22-126 (127)
63 cd04813 PA_1 PA_1: Protease-as 98.4 1.5E-06 3.2E-11 79.1 9.6 78 397-479 25-111 (117)
64 cd02123 PA_C_RZF_like PA_C-RZF 98.3 4.2E-06 9.2E-11 80.1 10.4 81 399-482 50-142 (153)
65 cd04819 PA_2 PA_2: Protease-as 98.0 3.8E-05 8.3E-10 71.3 9.0 78 401-481 32-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.1 0.0017 3.7E-08 60.8 7.6 75 408-485 34-132 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 97.0 0.00095 2.1E-08 65.2 5.2 68 409-479 51-155 (183)
68 PF14874 PapD-like: Flagellar- 96.6 0.067 1.4E-06 47.3 13.9 83 675-759 19-101 (102)
69 KOG2442 Uncharacterized conser 96.3 0.011 2.4E-07 64.5 7.9 79 409-490 91-178 (541)
70 cd04814 PA_M28_1 PA_M28_1: Pro 95.7 0.017 3.7E-07 54.2 5.3 54 400-453 34-102 (142)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 95.6 0.038 8.2E-07 52.5 7.1 77 400-476 34-131 (151)
72 cd04820 PA_M28_1_1 PA_M28_1_1: 95.5 0.026 5.7E-07 52.6 5.8 53 400-452 36-97 (137)
73 cd02121 PA_GCPII_like PA_GCPII 94.5 0.044 9.5E-07 55.5 4.5 54 396-452 49-107 (220)
74 PF10633 NPCBM_assoc: NPCBM-as 94.3 0.25 5.3E-06 41.4 8.0 56 676-731 5-61 (78)
75 cd02131 PA_hNAALADL2_like PA_h 94.2 0.071 1.5E-06 50.1 4.8 40 410-452 37-76 (153)
76 KOG4628 Predicted E3 ubiquitin 93.7 0.25 5.4E-06 53.0 8.4 77 400-479 63-149 (348)
77 KOG3920 Uncharacterized conser 92.0 0.18 4E-06 46.9 3.9 87 398-488 73-172 (193)
78 PF11614 FixG_C: IG-like fold 91.4 5.5 0.00012 36.2 13.1 53 678-731 33-85 (118)
79 PF06030 DUF916: Bacterial pro 90.3 2.5 5.4E-05 38.8 9.6 70 675-746 26-120 (121)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 81.5 2.1 4.6E-05 41.1 4.5 46 406-451 42-103 (157)
81 PF00345 PapD_N: Pili and flag 79.8 16 0.00035 33.2 9.7 68 676-745 14-89 (122)
82 COG1470 Predicted membrane pro 79.5 12 0.00025 41.8 9.7 72 676-747 397-470 (513)
83 COG1470 Predicted membrane pro 79.4 21 0.00045 39.9 11.6 71 676-747 284-361 (513)
84 KOG1114 Tripeptidyl peptidase 75.5 2.1 4.5E-05 51.0 2.9 24 140-164 77-100 (1304)
85 PF00635 Motile_Sperm: MSP (Ma 74.9 18 0.0004 31.9 8.4 54 675-731 17-70 (109)
86 TIGR02745 ccoG_rdxA_fixG cytoc 74.4 19 0.00041 40.6 10.0 54 677-731 347-400 (434)
87 PF07718 Coatamer_beta_C: Coat 73.0 31 0.00067 32.3 9.3 67 679-746 72-139 (140)
88 PF05506 DUF756: Domain of unk 61.5 45 0.00098 28.5 7.7 59 677-743 19-77 (89)
89 PF07610 DUF1573: Protein of u 49.4 70 0.0015 23.5 5.9 43 682-728 2-45 (45)
90 PF04744 Monooxygenase_B: Mono 48.9 2.8E+02 0.0061 30.3 12.5 86 676-763 263-380 (381)
91 PRK15098 beta-D-glucoside gluc 48.8 47 0.001 40.6 7.7 53 676-731 667-728 (765)
92 PF12690 BsuPI: Intracellular 46.8 1.3E+02 0.0028 25.5 7.9 52 678-730 2-70 (82)
93 smart00635 BID_2 Bacterial Ig- 45.0 65 0.0014 26.9 5.9 40 705-748 4-43 (81)
94 smart00237 Calx_beta Domains i 40.0 1.6E+02 0.0034 25.2 7.6 61 667-730 9-75 (90)
95 PLN03080 Probable beta-xylosid 37.9 80 0.0017 38.7 7.4 77 677-754 685-778 (779)
96 PF07705 CARDB: CARDB; InterP 36.9 2.6E+02 0.0056 23.6 10.2 53 675-731 18-72 (101)
97 PF05753 TRAP_beta: Translocon 36.6 4.1E+02 0.0088 26.2 10.8 70 675-746 37-114 (181)
98 PF08260 Kinin: Insect kinin p 34.4 18 0.00039 16.6 0.4 6 504-509 3-8 (8)
99 PF02845 CUE: CUE domain; Int 34.3 43 0.00094 24.2 2.7 25 559-583 5-29 (42)
100 PF00927 Transglut_C: Transglu 32.5 2.3E+02 0.005 24.8 7.8 57 674-731 13-77 (107)
101 PF00699 Urease_beta: Urease b 32.1 1.8E+02 0.0039 25.5 6.5 52 675-727 16-81 (100)
102 cd00407 Urease_beta Urease bet 31.4 1.4E+02 0.003 26.3 5.7 51 676-727 18-82 (101)
103 PRK15019 CsdA-binding activato 30.6 49 0.0011 31.4 3.2 33 543-576 77-109 (147)
104 PRK13203 ureB urease subunit b 29.9 1.4E+02 0.0031 26.2 5.5 51 676-727 18-82 (102)
105 TIGR03391 FeS_syn_CsdE cystein 29.5 54 0.0012 30.8 3.2 35 542-577 71-105 (138)
106 TIGR00192 urease_beta urease, 28.8 1.6E+02 0.0034 26.0 5.5 51 676-727 18-82 (101)
107 PRK09296 cysteine desufuration 26.7 64 0.0014 30.3 3.2 33 543-576 67-99 (138)
108 PRK13202 ureB urease subunit b 26.1 1.8E+02 0.004 25.6 5.5 49 678-727 21-83 (104)
109 PF13940 Ldr_toxin: Toxin Ldr, 26.0 57 0.0012 22.4 1.9 13 550-562 14-26 (35)
110 PF02657 SufE: Fe-S metabolism 24.5 79 0.0017 29.1 3.3 34 543-577 58-91 (125)
111 COG2166 sufE Cysteine desulfur 24.0 72 0.0016 30.0 2.9 34 542-576 71-104 (144)
112 smart00546 CUE Domain that may 23.6 1.2E+02 0.0026 21.9 3.5 25 558-582 5-29 (43)
113 TIGR00845 caca sodium/calcium 23.3 9.3E+02 0.02 30.1 12.7 62 667-731 407-475 (928)
114 PF04255 DUF433: Protein of un 22.5 75 0.0016 24.6 2.3 38 542-579 11-54 (56)
115 PRK13201 ureB urease subunit b 22.3 2.2E+02 0.0048 26.3 5.5 51 676-727 18-82 (136)
116 TIGR01451 B_ant_repeat conserv 22.0 2.7E+02 0.0059 21.2 5.4 40 674-715 10-50 (53)
117 PRK15308 putative fimbrial pro 21.2 3.4E+02 0.0075 27.9 7.5 53 677-730 32-100 (234)
118 PRK13205 ureB urease subunit b 20.6 2.4E+02 0.0053 26.6 5.5 51 676-727 18-82 (162)
119 PF08821 CGGC: CGGC domain; I 20.5 6.2E+02 0.013 22.6 8.1 66 256-325 36-104 (107)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-52 Score=450.07 Aligned_cols=299 Identities=54% Similarity=0.937 Sum_probs=257.2
Q ss_pred eccCCCCCcccccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCcee
Q 004205 115 RRLHTTHSWDFMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKV 194 (768)
Q Consensus 115 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki 194 (768)
+++++++++++++++......+|..+.+| +||+|||||||||++||+|.+....+.+..|++.|..+..++..+|++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAG-EGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKL 79 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCC-CccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeE
Confidence 46788999999999854444467779999 99999999999999999999988889999999999999988888899999
Q ss_pred EEEEeccCCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecC-CCCCH
Q 004205 195 IGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWD-SGCYD 273 (768)
Q Consensus 195 ~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~-~g~~~ 273 (768)
++.++|.++++.......+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++. ..+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 80 IGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 99999988755432222334456778999999999999999987766666666677899999999999999987 44888
Q ss_pred HHHHHHHHHHHHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCC
Q 004205 274 VDLLAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTD 352 (768)
Q Consensus 274 ~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~ 352 (768)
+++++||++|++++++|||||||.... ....+.+..++..+.++|++||+||||+|+ ....++..||+++|||+
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~--~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~--- 234 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSP--DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAS--- 234 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCC--CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEec---
Confidence 999999999999999999999998751 345677888888999999999999999998 77888899999999962
Q ss_pred ccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHH
Q 004205 353 RDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRK 432 (768)
Q Consensus 353 ~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k 432 (768)
T Consensus 235 -------------------------------------------------------------------------------- 234 (307)
T cd04852 235 -------------------------------------------------------------------------------- 234 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCC
Q 004205 433 SMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNA 512 (768)
Q Consensus 433 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 512 (768)
.
T Consensus 235 ---------------------------------------------------------------~---------------- 235 (307)
T cd04852 235 ---------------------------------------------------------------T---------------- 235 (307)
T ss_pred ---------------------------------------------------------------c----------------
Confidence 0
Q ss_pred CCCCcccCceeeCCceEEEEecC------CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 513 LNPEILKPDVTAPGLNIIAAWSP------AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 513 ~~~~~~KPDI~APG~~I~Sa~~~------~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
+||||+|||.+|++++.. ......|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 -----~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -----LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -----CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 467999999999999762 123456999999999999999999999999999999999999999985
No 2
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=7.2e-51 Score=455.36 Aligned_cols=412 Identities=23% Similarity=0.239 Sum_probs=259.2
Q ss_pred CCCcceEEEEEeCCCCCCCCCCCC-CCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCC
Q 004205 142 KNQVNIIVGFIDTGIWPESPSFSD-IGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPR 220 (768)
Q Consensus 142 ~Gg~GV~VgVIDtGid~~Hp~f~~-~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (768)
+| +||+|||||||||+.||+|++ ++.+++...|++....+.... ....+..+..+..+.......+.+.....
T Consensus 2 tG-~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~p~~~~~~~ 75 (455)
T cd07478 2 TG-KGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG-----GYYGGGEYTEEIINAALASDNPYDIVPSR 75 (455)
T ss_pred CC-CceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCc-----cccCceEEeHHHHHHHHhcCCccccCcCC
Confidence 57 999999999999999999985 457899999999887654211 11222222222122221122244445567
Q ss_pred CCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-----------CCHHHHHHHHHHHHHc---
Q 004205 221 DSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-----------CYDVDLLAAFDDAIRD--- 286 (768)
Q Consensus 221 D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-----------~~~~~i~~ai~~a~~~--- 286 (768)
|..||||||||||||+..++ ..+.||||+|+|+++|++...+ +...++++||+|+++.
T Consensus 76 D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~ 147 (455)
T cd07478 76 DENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALE 147 (455)
T ss_pred CCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999987542 2358999999999999998664 4578999999999874
Q ss_pred --CCcEEEeccCCCCCCCCCchhHHHHHHHHhhcC-CcEEEEeccCCCC-CCCcccC-C----Cc--eEEEcccCCCccc
Q 004205 287 --GVHILSLSLGPEAPQGDYFSDAISIGSFHATSR-GILVVASAGNEGN-EGSVTNL-A----PW--MFTIAASSTDRDF 355 (768)
Q Consensus 287 --g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~-~~~~~~~-~----p~--vitVgAs~~~~~~ 355 (768)
.+.|||||||... +++...++++++++.+..+ |++||+||||+|. ..+..+. . .. -+.|+.- +..+
T Consensus 148 ~~~p~VInlSlG~~~-g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~--~~~~ 224 (455)
T cd07478 148 LNKPLVINISLGTNF-GSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEG--EKGF 224 (455)
T ss_pred hCCCeEEEEccCcCC-CCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCC--Ccce
Confidence 3789999999876 5667778899999888766 9999999999997 3333221 0 01 1233321 1111
Q ss_pred eeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecC---CCchhHHHH
Q 004205 356 TSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAE---SSTESKLRK 432 (768)
Q Consensus 356 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~---~g~~~~~~k 432 (768)
. +++. ..+|-.+.....+|.++....... ..-....+.......+|.+..+.. .|......+
T Consensus 225 ~--~eiW----------~~~~d~~~v~i~sP~Ge~~~~i~~---~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~ 289 (455)
T cd07478 225 N--LEIW----------GDFPDRFSVSIISPSGESSGRINP---GIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIR 289 (455)
T ss_pred E--EEEe----------cCCCCEEEEEEECCCCCccCccCc---CCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEE
Confidence 1 0000 111111111122222111000000 000000000000011111111000 111111111
Q ss_pred HHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCe------eecC-CCCCCccccc
Q 004205 433 SMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAK------TVLG-SEPAPRVAAF 505 (768)
Q Consensus 433 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~------~~~~-~~~~~~~a~f 505 (768)
..+ ...|.+-+.++........++.|+|.-.+..++..++ ..... .+++.+. ++.. +...+.++.|
T Consensus 290 ~~~-~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~----~~~~~--~tit~Pa~~~~vitVga~~~~~~~~~~~ 362 (455)
T cd07478 290 FKN-IKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRFL----EPDPY--TTLTIPGTARSVITVGAYNQNNNSIAIF 362 (455)
T ss_pred ccC-CCccceEEEEEeccCCCceEEEEecCcCcCCCCCEee----cCCCC--ceEecCCCCCCcEEEEEEeCCCCcccCc
Confidence 122 2347788888877766666778888765554443333 22222 2333322 2222 2334569999
Q ss_pred cCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhC------CCCCHHHHHHHHH
Q 004205 506 SSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVH------PSWSPSAIKSAIM 579 (768)
Q Consensus 506 Ss~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~lsp~~ik~~L~ 579 (768)
|||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.|++++||++|+
T Consensus 363 Ss~G~~~--~~~~kpdi~APG~~i~s~~~~----~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~ 436 (455)
T cd07478 363 SGRGPTR--DGRIKPDIAAPGVNILTASPG----GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLI 436 (455)
T ss_pred cCCCcCC--CCCcCceEEecCCCEEEeecC----CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHH
Confidence 9999998 899999999999999999884 569999999999999999999999975 5679999999999
Q ss_pred hhcccccCCCCCccCCCCCCCCCCCccccc
Q 004205 580 TTATALDKNHKPITVDPKGRRGNAFDYGSG 609 (768)
Q Consensus 580 ~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G 609 (768)
+||+++. ...+++++||||
T Consensus 437 ~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 437 RGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred HhCccCC-----------CCCCCCCCCCCC
Confidence 9999752 345678899998
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.9e-50 Score=450.79 Aligned_cols=300 Identities=20% Similarity=0.223 Sum_probs=215.9
Q ss_pred cccccccccCCCCcCCC--CCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccc---cccCCCCccccCCceeEEE
Q 004205 123 WDFMGLMGEESMEIPGF--STKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQ---CESGEAFNASSCNRKVIGA 197 (768)
Q Consensus 123 ~~~~g~~~~~~~~~~~~--~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~---~~~~~~f~~~~~n~ki~g~ 197 (768)
...|+++.++++++|+. +..| +||+|||||||||++||||.+.-... +....|. ...+.++ -..+ .+
T Consensus 293 ~~qWgLd~i~~~~aw~~~~~~~g-~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~GrdgiDdD~nG~-----vdd~-~G 364 (639)
T PTZ00262 293 NLQWGLDLTRLDETQELIEPHEV-NDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRKGIDDDNNGN-----VDDE-YG 364 (639)
T ss_pred ccCcCcchhCchHHHHHhhccCC-CCcEEEEEccCCCCCChhhhhhcccc-cccccCccccccccCCc-----cccc-cc
Confidence 34478887788888873 4567 99999999999999999997542110 0001110 0000000 0011 12
Q ss_pred EeccCCccccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHH
Q 004205 198 RYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDL 276 (768)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i 276 (768)
++|.++ ..++.|.+||||||||||||...++. .+.||||+|+|+++|+++..+ +..+++
T Consensus 365 ~nfVd~------------~~~P~D~~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G~G~~sdI 424 (639)
T PTZ00262 365 ANFVNN------------DGGPMDDNYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHKLGRLGDM 424 (639)
T ss_pred ccccCC------------CCCCCCCCCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCCCccHHHH
Confidence 233222 13567899999999999999764332 248999999999999998766 788999
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCC--------------ccc---
Q 004205 277 LAAFDDAIRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGS--------------VTN--- 338 (768)
Q Consensus 277 ~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~--------------~~~--- 338 (768)
++||+||++.|++|||||||... ....+..|+.+|.++|++||+||||+|. ... +|+
T Consensus 425 ~~AI~yA~~~GA~VINmSlG~~~-----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s 499 (639)
T PTZ00262 425 FKCFDYCISREAHMINGSFSFDE-----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILS 499 (639)
T ss_pred HHHHHHHHHCCCCEEEeccccCC-----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhh
Confidence 99999999999999999999763 3456788888999999999999999986 211 111
Q ss_pred -CCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEE
Q 004205 339 -LAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVL 417 (768)
Q Consensus 339 -~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv 417 (768)
..+++|+|||+..+.
T Consensus 500 ~~~~nVIaVGAv~~d~---------------------------------------------------------------- 515 (639)
T PTZ00262 500 KKLRNVITVSNLIKDK---------------------------------------------------------------- 515 (639)
T ss_pred ccCCCEEEEeeccCCC----------------------------------------------------------------
Confidence 134566666532110
Q ss_pred EEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCC
Q 004205 418 VCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSE 497 (768)
Q Consensus 418 l~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 497 (768)
.
T Consensus 516 -------------------------------------------------------------------------------~ 516 (639)
T PTZ00262 516 -------------------------------------------------------------------------------N 516 (639)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004205 498 PAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSA 577 (768)
Q Consensus 498 ~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~ 577 (768)
.....+.||+||.. ++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|++.||+++
T Consensus 517 ~~~s~s~~Snyg~~-------~VDIaAPG~dI~St~p~----g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~i 585 (639)
T PTZ00262 517 NQYSLSPNSFYSAK-------YCQLAAPGTNIYSTFPK----NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRI 585 (639)
T ss_pred CcccccccccCCCC-------cceEEeCCCCeeeccCC----CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 01123456777632 24999999999999874 56999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCCCccCCCCCCCCCCCccc-ccccCccccCCCCeee
Q 004205 578 IMTTATALDKNHKPITVDPKGRRGNAFDYG-SGFLNPRKVLSPGLIY 623 (768)
Q Consensus 578 L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G-~G~vn~~~Al~~~l~~ 623 (768)
|++||.++.. .+..+| .|+||+++|++.++-+
T Consensus 586 L~~TA~~l~~--------------~~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 586 LKESIVQLPS--------------LKNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHhCccCCC--------------CCCccccCcEEcHHHHHHHHHhc
Confidence 9999986421 111233 3899999999866544
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1e-48 Score=411.35 Aligned_cols=270 Identities=21% Similarity=0.233 Sum_probs=202.6
Q ss_pred CCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCC
Q 004205 140 STKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSP 219 (768)
Q Consensus 140 ~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 219 (768)
+++| +||+|||||||||.+||++.+...+. +.+...+..+ ....
T Consensus 1 g~tG-~gv~vaviDtGvd~~~~~~~~~~~~~-----------------------l~~~~~~~~~------------~~~~ 44 (275)
T cd05562 1 GVDG-TGIKIGVISDGFDGLGDAADDQASGD-----------------------LPGNVNVLGD------------LDGG 44 (275)
T ss_pred CCCC-CceEEEEEeCCccccccccccccCCC-----------------------CCcceeeccc------------cCCC
Confidence 4678 99999999999999998653221111 1111111111 0234
Q ss_pred CCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCCcEEEeccCCCC
Q 004205 220 RDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEA 299 (768)
Q Consensus 220 ~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 299 (768)
.|..+||||||||| .||||+|+|+.+|+. ...+++++||+||+++|++|||||||...
T Consensus 45 ~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~ 102 (275)
T cd05562 45 SGGGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLN 102 (275)
T ss_pred CCCCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 57889999999999 479999999999885 45788999999999999999999999864
Q ss_pred CCCCCchhHHHHHHHHhhcC-CcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccc
Q 004205 300 PQGDYFSDAISIGSFHATSR-GILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCK 376 (768)
Q Consensus 300 ~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p 376 (768)
.+.+.+..+..+++++.++ |++||+||||+|. ....++..|++|+|||++.+.......
T Consensus 103 -~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s----------------- 164 (275)
T cd05562 103 -EPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS----------------- 164 (275)
T ss_pred -CCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-----------------
Confidence 2222345677888888887 9999999999998 455678899999999976432100000
Q ss_pred cccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCc
Q 004205 377 MNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAI 456 (768)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 456 (768)
|. +.
T Consensus 165 -------------------------~~------------------------------------~~--------------- 168 (275)
T cd05562 165 -------------------------DP------------------------------------AP--------------- 168 (275)
T ss_pred -------------------------cc------------------------------------cc---------------
Confidence 00 00
Q ss_pred cceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCc-eEEEEecC
Q 004205 457 PFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGL-NIIAAWSP 535 (768)
Q Consensus 457 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~I~Sa~~~ 535 (768)
.......+.|+++||+. ++++||||+|||+ .+.+++..
T Consensus 169 ---------------------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~ 207 (275)
T cd05562 169 ---------------------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG 207 (275)
T ss_pred ---------------------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC
Confidence 00112345678889987 7889999999975 44555432
Q ss_pred CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccc
Q 004205 536 AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRK 615 (768)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~ 615 (768)
+.|..++|||||||||||++|||+|++|+|+++|||++|++||+++. .+.++..||||+||+.+
T Consensus 208 ----~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~~g~d~~~G~G~vda~~ 271 (275)
T cd05562 208 ----DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------EPGYDNASGSGLVDADR 271 (275)
T ss_pred ----CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------CCCCCCCcCcCcccHHH
Confidence 56999999999999999999999999999999999999999999753 13345689999999999
Q ss_pred cCC
Q 004205 616 VLS 618 (768)
Q Consensus 616 Al~ 618 (768)
|++
T Consensus 272 Av~ 274 (275)
T cd05562 272 AVA 274 (275)
T ss_pred Hhh
Confidence 986
No 5
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=9.3e-49 Score=408.74 Aligned_cols=241 Identities=25% Similarity=0.372 Sum_probs=197.6
Q ss_pred CCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccC
Q 004205 137 PGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSF 216 (768)
Q Consensus 137 ~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 216 (768)
|+++++| +||+|||||||||.+||+|.+.. ...+|.++
T Consensus 1 W~~g~tG-~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~~------------- 38 (255)
T cd07479 1 WQLGYTG-AGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTNE------------- 38 (255)
T ss_pred CCCCCCC-CCCEEEEEeCCCCCCCcchhccc----------------------------cccccCCC-------------
Confidence 8899999 99999999999999999996310 00111111
Q ss_pred CCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEecc
Q 004205 217 RSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSL 295 (768)
Q Consensus 217 ~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~Sl 295 (768)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..+.++++|+||++++++||||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~ 107 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSI 107 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeec
Confidence 2345778999999999998752 248999999999999998766 5667899999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC--CcccCCCceEEEcccCCCccceeeEEeCCCceEecccc
Q 004205 296 GPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG--SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESL 372 (768)
Q Consensus 296 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 372 (768)
|... +...++..++.++.++|++||+||||+|+ .. ..++..+++|+|||..
T Consensus 108 G~~~----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~---------------------- 161 (255)
T cd07479 108 GGPD----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID---------------------- 161 (255)
T ss_pred cCCC----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec----------------------
Confidence 9764 33456666777888999999999999997 33 3567788899999742
Q ss_pred cccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 373 SLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 373 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCC----CCCcccCceeeCCce
Q 004205 453 DVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNAL----NPEILKPDVTAPGLN 528 (768)
Q Consensus 453 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~APG~~ 528 (768)
..++++.|||+|++.. ..+++||||+|||.+
T Consensus 162 ---------------------------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~ 196 (255)
T cd07479 162 ---------------------------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSG 196 (255)
T ss_pred ---------------------------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCC
Confidence 1256789999996521 257889999999999
Q ss_pred EEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCC----CCCHHHHHHHHHhhcccc
Q 004205 529 IIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHP----SWSPSAIKSAIMTTATAL 585 (768)
Q Consensus 529 I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~lsp~~ik~~L~~TA~~~ 585 (768)
|+++... ..|..++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 197 i~~~~~~----~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 197 VYGSKLK----GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred eeccccC----CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 9988653 4588999999999999999999999998 789999999999999965
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-48 Score=415.22 Aligned_cols=281 Identities=25% Similarity=0.270 Sum_probs=189.0
Q ss_pred CcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCC
Q 004205 144 QVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSS 223 (768)
Q Consensus 144 g~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~ 223 (768)
|+||+|||||||||++||||.+.... .|...++ + ...+....++..+ ....+.|.+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d----~-----~~~~~~g~d~~~~-----------~~~~~~D~~ 56 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFD----Y-----KAYLLPGMDKWGG-----------FYVIMYDFF 56 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccC----c-----CCCccCCcCCCCC-----------ccCCCCCcc
Confidence 49999999999999999999643210 0100000 0 0011111111111 012467899
Q ss_pred CCcchhhhccccccccccccccc-CCCcceeccCCCcEeeeeeecCCC-CCHHHHHH-------HHHHHH--HcCCcEEE
Q 004205 224 GHGSHTASTAAGRYVANMNYRGL-AAGGARGGAPMARIAVYKTCWDSG-CYDVDLLA-------AFDDAI--RDGVHILS 292 (768)
Q Consensus 224 gHGTHVAGi~ag~~~~~~~~~G~-~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~-------ai~~a~--~~g~dVIN 292 (768)
||||||||||||+.....+.+++ ....+.||||+|+|+.+|++...+ .....+.+ +++|.. +++++|||
T Consensus 57 gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN 136 (311)
T cd07497 57 SHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVIS 136 (311)
T ss_pred ccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEE
Confidence 99999999999986433222211 123469999999999999997543 32222333 344443 67899999
Q ss_pred eccCCCCCCCC---CchhHHHHHHHHh-hcCCcEEEEeccCCCC-C--CCcccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 293 LSLGPEAPQGD---YFSDAISIGSFHA-TSRGILVVASAGNEGN-E--GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 293 ~SlG~~~~~~~---~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~-~--~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
||||....... ...+..+..++.+ .++|+++|+||||+|+ . ...|+.++++|+|||++.....+..+
T Consensus 137 ~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~------ 210 (311)
T cd07497 137 NSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL------ 210 (311)
T ss_pred ecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh------
Confidence 99997641100 1112333333332 3899999999999998 3 34677889999999975321100000
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
.
T Consensus 211 -----------~-------------------------------------------------------------------- 211 (311)
T cd07497 211 -----------F-------------------------------------------------------------------- 211 (311)
T ss_pred -----------h--------------------------------------------------------------------
Confidence 0
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
.......+.++.||||||+. ++++||||+||
T Consensus 212 -----------------------------------------------~~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~Ap 242 (311)
T cd07497 212 -----------------------------------------------GYLPGGSGDVVSWSSRGPSI--AGDPKPDLAAI 242 (311)
T ss_pred -----------------------------------------------ccccCCCCCccccccCCCCc--ccCCCCceecc
Confidence 00012346789999999998 79999999999
Q ss_pred CceEEEEecCCC------CCcceEEeccccchhHHHHHHHHHHHHhCC------CCCHHHHHHHHHhhc
Q 004205 526 GLNIIAAWSPAV------GKMQFNILSGTSMACPHVTGIATLIKAVHP------SWSPSAIKSAIMTTA 582 (768)
Q Consensus 526 G~~I~Sa~~~~~------~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~lsp~~ik~~L~~TA 582 (768)
|++|+++.+... +...|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 243 G~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 243 GAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999876421 224699999999999999999999999876 689999999999997
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=6.3e-48 Score=422.41 Aligned_cols=312 Identities=29% Similarity=0.373 Sum_probs=234.3
Q ss_pred CcCCCCC-CCCcceEEEEEeCCCCCCCCCCCCCCCCCCCC-----ccccccccCCCCccccCCceeEEEEeccCCccccc
Q 004205 135 EIPGFST-KNQVNIIVGFIDTGIWPESPSFSDIGMPPAPA-----KWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEE 208 (768)
Q Consensus 135 ~~~~~~~-~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~-----~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~ 208 (768)
.+|+++. +| +||+|||||||||++||+|.+....+... .+...+..+ ...+++.+++..++|.++...
T Consensus 1 ~~w~~~~~~G-~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-- 74 (346)
T cd07475 1 PLWDKGGYKG-EGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDD-- 74 (346)
T ss_pred ChhhhcCCCC-CCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCc--
Confidence 3788888 88 99999999999999999998664333211 122222211 122356788888888765221
Q ss_pred cccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecC--C-CCCHHHHHHHHHHHHH
Q 004205 209 DIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWD--S-GCYDVDLLAAFDDAIR 285 (768)
Q Consensus 209 ~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~--~-g~~~~~i~~ai~~a~~ 285 (768)
.....|..+|||||||||+|...+... ...+.||||+|+|+.+|+++. . ......+++|++++++
T Consensus 75 -------~~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~ 142 (346)
T cd07475 75 -------ILDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVK 142 (346)
T ss_pred -------cCCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Confidence 112457889999999999998754211 234599999999999999973 3 3777889999999999
Q ss_pred cCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCC----------------cccCCCceEEEcc
Q 004205 286 DGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGS----------------VTNLAPWMFTIAA 348 (768)
Q Consensus 286 ~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~----------------~~~~~p~vitVgA 348 (768)
.|++|||||||... ........+..++.++.++|++||+||||+|. ... .++..+++|+||+
T Consensus 143 ~g~~Vin~S~G~~~-~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga 221 (346)
T cd07475 143 LGADVINMSLGSTA-GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVAS 221 (346)
T ss_pred cCCCEEEECCCcCC-CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEee
Confidence 99999999999886 22244567788888999999999999999986 211 1233455666665
Q ss_pred cCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchh
Q 004205 349 SSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTES 428 (768)
Q Consensus 349 s~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~ 428 (768)
+...
T Consensus 222 ~~~~---------------------------------------------------------------------------- 225 (346)
T cd07475 222 ANKK---------------------------------------------------------------------------- 225 (346)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 3200
Q ss_pred HHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCC
Q 004205 429 KLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSK 508 (768)
Q Consensus 429 ~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~ 508 (768)
......+.++.||+|
T Consensus 226 -----------------------------------------------------------------~~~~~~~~~~~~S~~ 240 (346)
T cd07475 226 -----------------------------------------------------------------VPNPNGGQMSGFSSW 240 (346)
T ss_pred -----------------------------------------------------------------cCCCCCCccCCCcCC
Confidence 002234678899999
Q ss_pred CCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHh----CCCCCHHH----HHHHHHh
Q 004205 509 GPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAV----HPSWSPSA----IKSAIMT 580 (768)
Q Consensus 509 Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~lsp~~----ik~~L~~ 580 (768)
||+. ++++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++
T Consensus 241 G~~~--~~~~~pdi~apG~~i~s~~~~----~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ 314 (346)
T cd07475 241 GPTP--DLDLKPDITAPGGNIYSTVND----NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMN 314 (346)
T ss_pred CCCc--ccCcCCeEEeCCCCeEEecCC----CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 9998 799999999999999999763 56999999999999999999999998 79999877 7889999
Q ss_pred hcccccCCCCCccCCCCCCCCCCCcccccccCccccCC
Q 004205 581 TATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 581 TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (768)
||.+.. ........+.+.++|+|+||+.+|++
T Consensus 315 ta~~~~------~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 315 TATPPL------DSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cCCccc------ccCCCCccCCccccCcchhcHHHhhC
Confidence 998421 11113556778899999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.2e-47 Score=407.30 Aligned_cols=293 Identities=28% Similarity=0.383 Sum_probs=228.7
Q ss_pred CCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccc
Q 004205 133 SMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVE 212 (768)
Q Consensus 133 ~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~ 212 (768)
.+++|+.+++| +||+|||||+|||++||+|.+.-.+ +.++.+.+++..+... ....
T Consensus 2 v~~~~~~g~tG-~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~--~~~~ 57 (312)
T cd07489 2 VDKLHAEGITG-KGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD--GTNP 57 (312)
T ss_pred hhhHHhCCCCC-CCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc--cccC
Confidence 35899999999 9999999999999999999753211 1123333333322100 0011
Q ss_pred cccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEE
Q 004205 213 TVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHIL 291 (768)
Q Consensus 213 ~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVI 291 (768)
..+...+.|..||||||||||+|+..+ . .+.||||+|+|+.+|++...+ ...+.++++|++|++++++||
T Consensus 58 ~~~~~~~~d~~gHGT~vAgiia~~~~~----~-----~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iI 128 (312)
T cd07489 58 PVPDDDPMDCQGHGTHVAGIIAANPNA----Y-----GFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVI 128 (312)
T ss_pred CCCCCCCCCCCCcHHHHHHHHhcCCCC----C-----ceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 222345667899999999999998743 2 348999999999999998655 667789999999999999999
Q ss_pred EeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-C---CCcccCCCceEEEcccCCCccceeeEEeCCCceE
Q 004205 292 SLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-E---GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANF 367 (768)
Q Consensus 292 N~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~---~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~ 367 (768)
|||||... . +..+.+..++.++.++|+++|+||||+|. . ...++..+++|+||+.+
T Consensus 129 n~S~g~~~-~--~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------------- 188 (312)
T cd07489 129 TASLGGPS-G--WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------------- 188 (312)
T ss_pred EeCCCcCC-C--CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------------
Confidence 99999874 2 34467777888889999999999999987 2 23456677888888521
Q ss_pred ecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEE
Q 004205 368 TGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILV 447 (768)
Q Consensus 368 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~ 447 (768)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCc
Q 004205 448 DEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGL 527 (768)
Q Consensus 448 n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 527 (768)
+.||+|||+. +...||||+|||+
T Consensus 189 -------------------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~ 211 (312)
T cd07489 189 -------------------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGG 211 (312)
T ss_pred -------------------------------------------------------CCccCCCCCC--CCCcCccEEcCCC
Confidence 5689999998 6889999999999
Q ss_pred eEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhC-CCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcc
Q 004205 528 NIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVH-PSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDY 606 (768)
Q Consensus 528 ~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~ 606 (768)
+++++++. ..+.|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+..-. .....+..++
T Consensus 212 ~i~~~~~~--~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~---~~~~~~~~~~ 286 (312)
T cd07489 212 NILSTYPL--AGGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA---LPDLAPVAQQ 286 (312)
T ss_pred CEEEeeeC--CCCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc---ccCCCCHhhc
Confidence 99999884 22459999999999999999999999999 999999999999999998654321111 1124677899
Q ss_pred cccccCccccCCCC
Q 004205 607 GSGFLNPRKVLSPG 620 (768)
Q Consensus 607 G~G~vn~~~Al~~~ 620 (768)
|+|+||+.+|++..
T Consensus 287 G~G~vn~~~a~~~~ 300 (312)
T cd07489 287 GAGLVNAYKALYAT 300 (312)
T ss_pred CcceeeHHHHhcCC
Confidence 99999999999854
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=4.3e-46 Score=390.48 Aligned_cols=245 Identities=27% Similarity=0.348 Sum_probs=201.2
Q ss_pred cCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccccccccccc
Q 004205 136 IPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVS 215 (768)
Q Consensus 136 ~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 215 (768)
+|+.+++| +||+|||||+|||++||+|.+....+ ...+.. .
T Consensus 2 lw~~g~~g-~gV~VaViDsGid~~hp~l~~~~~~~--------------------------~~~~~~------------~ 42 (267)
T cd07476 2 LFAFGGGD-PRITIAILDGPVDRTHPCFRGANLTP--------------------------LFTYAA------------A 42 (267)
T ss_pred ceeccCCC-CCeEEEEeCCCcCCCChhhCCCcccc--------------------------ccCccc------------c
Confidence 79999999 99999999999999999997532111 000000 0
Q ss_pred CCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC--CCHHHHHHHHHHHHHcCCcEEEe
Q 004205 216 FRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG--CYDVDLLAAFDDAIRDGVHILSL 293 (768)
Q Consensus 216 ~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~ 293 (768)
.....|..+|||||||||+|+... .+.||||+|+|+.+|++...+ ++..++++||+||+++|++||||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~ 112 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINI 112 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 123456789999999999987521 248999999999999997654 44688999999999999999999
Q ss_pred ccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccc
Q 004205 294 SLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESL 372 (768)
Q Consensus 294 SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 372 (768)
|||... ........+..+++.+.++|++||+||||+|. ....|+..+++|+|||++.
T Consensus 113 S~G~~~-~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------- 170 (267)
T cd07476 113 SGGRLT-QTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------------- 170 (267)
T ss_pred cCCcCC-CCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------------
Confidence 999764 22234567888888999999999999999998 7778888999999997431
Q ss_pred cccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 373 SLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 373 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEE
Q 004205 453 DVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAA 532 (768)
Q Consensus 453 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa 532 (768)
.+.++.||+||+.. .||||+|||.+|+++
T Consensus 171 ----------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~ 199 (267)
T cd07476 171 ----------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGA 199 (267)
T ss_pred ----------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceee
Confidence 13467899999864 388999999999999
Q ss_pred ecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCC----CCHHHHHHHHHhhccccc
Q 004205 533 WSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPS----WSPSAIKSAIMTTATALD 586 (768)
Q Consensus 533 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----lsp~~ik~~L~~TA~~~~ 586 (768)
.+. +.|..++|||||||||||++|||+|++|. ++|++||++|++||+++.
T Consensus 200 ~~~----~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~ 253 (267)
T cd07476 200 ALG----GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCD 253 (267)
T ss_pred cCC----CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCC
Confidence 874 56999999999999999999999999887 899999999999999874
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-45 Score=392.98 Aligned_cols=287 Identities=34% Similarity=0.484 Sum_probs=217.0
Q ss_pred CcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccccccc---ccccCCCCC
Q 004205 144 QVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIV---ETVSFRSPR 220 (768)
Q Consensus 144 g~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~---~~~~~~~~~ 220 (768)
|+||+|||||+|||++||+|.+..+ .+.++...++|..+........ .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF---------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC---------------------CCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 4999999999999999999974321 1345555555544311110000 000112245
Q ss_pred CCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCC
Q 004205 221 DSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEA 299 (768)
Q Consensus 221 D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 299 (768)
|..+|||||||+|+|...+. ..+.||||+|+|+.+|++...+ +...++++||+|+++++++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 68999999999999876442 2348999999999999998444 78889999999999999999999999774
Q ss_pred CCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC--CcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccc
Q 004205 300 PQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG--SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCK 376 (768)
Q Consensus 300 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p 376 (768)
. ...+.+..+++.+.++|+++|+||||+|. .. ..++..+++|+|||+....
T Consensus 132 ~---~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------- 185 (295)
T cd07474 132 N---GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------- 185 (295)
T ss_pred C---CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------
Confidence 2 24567788888999999999999999987 33 3467889999999853110
Q ss_pred cccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCc
Q 004205 377 MNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAI 456 (768)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 456 (768)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCC-CCCCCCCcccCceeeCCceEEEEecC
Q 004205 457 PFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKG-PNALNPEILKPDVTAPGLNIIAAWSP 535 (768)
Q Consensus 457 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G-p~~~~~~~~KPDI~APG~~I~Sa~~~ 535 (768)
.........|+++| +.. +..+||||+|||++|++++..
T Consensus 186 ---------------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~ 224 (295)
T cd07474 186 ---------------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPG 224 (295)
T ss_pred ---------------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccC
Confidence 00112334455554 544 788999999999999999874
Q ss_pred CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccc
Q 004205 536 AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRK 615 (768)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~ 615 (768)
. ...|..++|||||||+|||++|||+|++|+|++++||++|++||++....+ ....++..+|+|+||+.+
T Consensus 225 ~--~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~--------~~~~~~~~~G~G~l~~~~ 294 (295)
T cd07474 225 S--GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD--------GVVYPVSRQGAGRVDALR 294 (295)
T ss_pred C--CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC--------CCcCChhccCcceecccc
Confidence 2 346999999999999999999999999999999999999999999764322 222356799999999988
Q ss_pred c
Q 004205 616 V 616 (768)
Q Consensus 616 A 616 (768)
|
T Consensus 295 A 295 (295)
T cd07474 295 A 295 (295)
T ss_pred C
Confidence 7
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.2e-45 Score=392.97 Aligned_cols=267 Identities=25% Similarity=0.325 Sum_probs=191.9
Q ss_pred cceEEEEEeCCCCCCCCCCCCCCCC-CCCCccccccccCCCCccccCCceeEEEEeccCCcccc-----------ccccc
Q 004205 145 VNIIVGFIDTGIWPESPSFSDIGMP-PAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAE-----------EDIVE 212 (768)
Q Consensus 145 ~GV~VgVIDtGid~~Hp~f~~~~~~-~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~-----------~~~~~ 212 (768)
++|+|||||||||++||+|++..+. +.....++..+.+.+|. +++.| ++|...+... ...+.
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~-----dd~~g-~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYI-----DDVNG-WNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcc-----ccccC-eeccCCcccccccccCcccccccccc
Confidence 6899999999999999999865321 11112233333333332 12233 3333211100 00001
Q ss_pred cccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCCcEEE
Q 004205 213 TVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILS 292 (768)
Q Consensus 213 ~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN 292 (768)
..+...+.+..+|||||||||+|...++ .| +.||||+|+|+.+|++........++++||+||++.|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 1222345578999999999999976433 22 489999999999999875556778899999999999999999
Q ss_pred eccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC---Ccc--------cCCCceEEEcccCCCccceeeEE
Q 004205 293 LSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG---SVT--------NLAPWMFTIAASSTDRDFTSEIV 360 (768)
Q Consensus 293 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~---~~~--------~~~p~vitVgAs~~~~~~~~~~~ 360 (768)
||||... . .....+..++..+.++|+++|+||||+|. .. ..+ ...+++|+|||+...
T Consensus 147 ~S~G~~~-~--~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~-------- 215 (291)
T cd07483 147 MSFGKSF-S--PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK-------- 215 (291)
T ss_pred eCCCCCC-C--CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc--------
Confidence 9999753 1 23346777888899999999999999985 11 111 123456666653211
Q ss_pred eCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcC
Q 004205 361 LGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAG 440 (768)
Q Consensus 361 ~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~G 440 (768)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccC
Q 004205 441 GVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKP 520 (768)
Q Consensus 441 a~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 520 (768)
.....++.||++|+. +|
T Consensus 216 --------------------------------------------------------~~~~~~~~~Sn~G~~-------~v 232 (291)
T cd07483 216 --------------------------------------------------------YENNLVANFSNYGKK-------NV 232 (291)
T ss_pred --------------------------------------------------------CCcccccccCCCCCC-------ce
Confidence 011347889999984 35
Q ss_pred ceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 521 DVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 521 DI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
||+|||++|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 233 di~APG~~i~s~~~~----~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 233 DVFAPGERIYSTTPD----NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred EEEeCCCCeEeccCc----CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999999999764 56999999999999999999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-45 Score=382.21 Aligned_cols=233 Identities=27% Similarity=0.398 Sum_probs=191.1
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCc
Q 004205 147 IIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHG 226 (768)
Q Consensus 147 V~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 226 (768)
|+|||||||||.+||+|.+.. +...++.. ....|..+||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~--------------~~~~~~~~HG 39 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG--------------PGAPAPSAHG 39 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC--------------CCCCCCCCCH
Confidence 789999999999999996431 11111110 1245678999
Q ss_pred chhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC----CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCC
Q 004205 227 SHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG----CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQG 302 (768)
Q Consensus 227 THVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 302 (768)
|||||||+|+.... .||||+|+|+.+|++...+ ++..++++||+||++.|++|||||||...
T Consensus 40 T~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~--- 105 (239)
T cd05561 40 TAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP--- 105 (239)
T ss_pred HHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC---
Confidence 99999999976321 6999999999999998542 66788999999999999999999999653
Q ss_pred CCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccc
Q 004205 303 DYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNAS 380 (768)
Q Consensus 303 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~ 380 (768)
...++.+++++.++|++||+||||+|. ....|+..+++|+|++++
T Consensus 106 ---~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------ 152 (239)
T cd05561 106 ---NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------ 152 (239)
T ss_pred ---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec------------------------------
Confidence 246778888999999999999999997 456778888999998742
Q ss_pred hhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCcccee
Q 004205 381 ARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVI 460 (768)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 460 (768)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCc
Q 004205 461 PSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKM 540 (768)
Q Consensus 461 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~ 540 (768)
..+.++.||++|+.. ||+|||++|+++.+. +
T Consensus 153 -------------------------------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~----~ 183 (239)
T cd05561 153 -------------------------------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG----G 183 (239)
T ss_pred -------------------------------------CCCCccccCCCCCcc--------eEEccccceecccCC----C
Confidence 124567899999987 999999999998653 5
Q ss_pred ceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCccccc
Q 004205 541 QFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSG 609 (768)
Q Consensus 541 ~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G 609 (768)
.|..++|||||||||||++||++|++| ++++|||++|++||+++.. +.++..||||
T Consensus 184 ~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~------------~~~d~~~G~G 239 (239)
T cd05561 184 GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP------------PGRDPVFGYG 239 (239)
T ss_pred CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC------------CCcCCCcCCC
Confidence 699999999999999999999999999 9999999999999997632 3345688987
No 13
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-46 Score=387.23 Aligned_cols=333 Identities=25% Similarity=0.293 Sum_probs=260.0
Q ss_pred cCCCCcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCccc-----cccc------------ceEEEec---ceeeEEEEE
Q 004205 32 ICFSAKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSME-----QAQA------------SHVYSYK---HGFRGFAAK 91 (768)
Q Consensus 32 ~~~~~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~------------~~~~~y~---~~~~g~s~~ 91 (768)
.+..+.+|||.|++.. .+...+.|.+|++..+..+.. .... .+.+.|. .+|+|+.-.
T Consensus 76 ~~~~~~~YiV~f~~~~---~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ 152 (501)
T KOG1153|consen 76 EEALPSRYIVVFKPDA---SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGY 152 (501)
T ss_pred hcccccceEEEeCCCc---cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccc
Confidence 4567899999999554 223567788888877632111 1111 1333443 378899999
Q ss_pred eCHHHHHHHhcCCCeEEEEecceeccCC-----CCCcccccccccCCCC-----cC----CCCCCCCcceEEEEEeCCCC
Q 004205 92 LTDQQASQIAQMPGVVSVFPNMKRRLHT-----THSWDFMGLMGEESME-----IP----GFSTKNQVNIIVGFIDTGIW 157 (768)
Q Consensus 92 ~~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~~~-----~~----~~~~~Gg~GV~VgVIDtGid 157 (768)
++.+-+..+++.|-++.++++..++... .+....|||.++.-.+ -| .+-..| +||...|+||||+
T Consensus 153 ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG-~gvtaYv~DTGVn 231 (501)
T KOG1153|consen 153 FTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAG-KGVTAYVLDTGVN 231 (501)
T ss_pred cccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccC-CCeEEEEeccccc
Confidence 9999999999999999999998776543 2233334554432111 11 122358 9999999999999
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCcchhhhcccccc
Q 004205 158 PESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGSHTASTAAGRY 237 (768)
Q Consensus 158 ~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~ 237 (768)
.+||||.++. ..|..+ ... ....|++||||||||+|+++.
T Consensus 232 i~H~dFegRa------------~wGa~i--------------~~~--------------~~~~D~nGHGTH~AG~I~sKt 271 (501)
T KOG1153|consen 232 IEHPDFEGRA------------IWGATI--------------PPK--------------DGDEDCNGHGTHVAGLIGSKT 271 (501)
T ss_pred ccccccccce------------eccccc--------------CCC--------------CcccccCCCcceeeeeeeccc
Confidence 9999997542 111111 100 235689999999999999987
Q ss_pred cccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHc---------CCcEEEeccCCCCCCCCCchh
Q 004205 238 VANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRD---------GVHILSLSLGPEAPQGDYFSD 307 (768)
Q Consensus 238 ~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIN~SlG~~~~~~~~~~~ 307 (768)
.|||.+++|+++||++++| ++.+++++++|++++. +..|.|||+|+.. +-
T Consensus 272 --------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~------S~ 331 (501)
T KOG1153|consen 272 --------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR------SA 331 (501)
T ss_pred --------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc------cH
Confidence 7899999999999999988 8899999999999986 4799999999874 45
Q ss_pred HHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhccc
Q 004205 308 AISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIIS 385 (768)
Q Consensus 308 ~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~ 385 (768)
++..|+++|.+.||.+++||||+.. +.+.|+.+..+|||||++.
T Consensus 332 aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------------------------------- 377 (501)
T KOG1153|consen 332 ALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------------------------------- 377 (501)
T ss_pred HHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------------------------------
Confidence 7899999999999999999999998 8999999999999998642
Q ss_pred cccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEe
Q 004205 386 ASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVV 465 (768)
Q Consensus 386 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i 465 (768)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEe
Q 004205 466 GKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNIL 545 (768)
Q Consensus 466 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~ 545 (768)
.+.++.|||||+|+ ||.|||.+|+|+|.. ..+...++
T Consensus 378 ---------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iG--s~~at~il 414 (501)
T KOG1153|consen 378 ---------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIG--SNNATAIL 414 (501)
T ss_pred ---------------------------------ccchhhhcCcccee--------eeecCchhhhhhhhc--Cccchhee
Confidence 26789999999999 999999999999985 33568899
Q ss_pred ccccchhHHHHHHHHHHHHhCCC---------CCHHHHHHHHHhhcccc
Q 004205 546 SGTSMACPHVTGIATLIKAVHPS---------WSPSAIKSAIMTTATAL 585 (768)
Q Consensus 546 sGTSmAaP~VAG~aALl~q~~p~---------lsp~~ik~~L~~TA~~~ 585 (768)
||||||+|||||++|.+++.+|. .||.++|..+..-..+.
T Consensus 415 SGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~d 463 (501)
T KOG1153|consen 415 SGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQD 463 (501)
T ss_pred ecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccccc
Confidence 99999999999999999998873 38888888887766543
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.7e-44 Score=379.89 Aligned_cols=246 Identities=29% Similarity=0.352 Sum_probs=194.6
Q ss_pred CcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCC
Q 004205 144 QVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSS 223 (768)
Q Consensus 144 g~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~ 223 (768)
|+||+|||||+|||++||+|.+.- ++.... .+...+.+.+. ......+.|..
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~--------~~~~~~-----------~~~~~~~~~d~---------~~~~~~~~d~~ 52 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKY--------RGWGGG-----------SADHDYNWFDP---------VGNTPLPYDDN 52 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcc--------cccCCC-----------CcccccccccC---------CCCCCCCCCCC
Confidence 499999999999999999997531 110000 00000001010 00113456788
Q ss_pred CCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH------------cCCcEE
Q 004205 224 GHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR------------DGVHIL 291 (768)
Q Consensus 224 gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dVI 291 (768)
+|||||||||+|.... +...||||+|+|+.+|+++..++...+++++++++++ .+++||
T Consensus 53 ~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Ii 123 (264)
T cd07481 53 GHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVI 123 (264)
T ss_pred CchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEE
Confidence 9999999999987532 2238999999999999998777888899999999975 789999
Q ss_pred EeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC---CcccCCCceEEEcccCCCccceeeEEeCCCceE
Q 004205 292 SLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG---SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANF 367 (768)
Q Consensus 292 N~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~ 367 (768)
|||||... .....+..++..+.++|++||+||||++. .. ..++..+++|+|||.+
T Consensus 124 n~S~G~~~----~~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~----------------- 182 (264)
T cd07481 124 NNSWGGPS----GDNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD----------------- 182 (264)
T ss_pred EeCCCcCC----CCchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC-----------------
Confidence 99999875 13455666777888999999999999987 22 3577888999999743
Q ss_pred ecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEE
Q 004205 368 TGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILV 447 (768)
Q Consensus 368 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~ 447 (768)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCc
Q 004205 448 DEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGL 527 (768)
Q Consensus 448 n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 527 (768)
..+.++.||++||.. .+++||||+|||.
T Consensus 183 --------------------------------------------------~~~~~~~~S~~g~~~--~~~~~~dv~ApG~ 210 (264)
T cd07481 183 --------------------------------------------------RNDVLADFSSRGPST--YGRIKPDISAPGV 210 (264)
T ss_pred --------------------------------------------------CCCCCccccCCCCCC--CCCcCceEEECCC
Confidence 125678999999988 6899999999999
Q ss_pred eEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCC--CCHHHHHHHHHhhcc
Q 004205 528 NIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPS--WSPSAIKSAIMTTAT 583 (768)
Q Consensus 528 ~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--lsp~~ik~~L~~TA~ 583 (768)
+|+++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 211 ~i~s~~~~----~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 211 NIRSAVPG----GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CeEEecCC----CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 99999874 56999999999999999999999999999 999999999999985
No 15
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.3e-44 Score=376.37 Aligned_cols=244 Identities=30% Similarity=0.360 Sum_probs=196.1
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGH 225 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 225 (768)
||+|||||||||++||+|.... ..++.++.+.++|.++.. ....|..+|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~-----------~~~~~~~~H 49 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN-----------NTNYTDDDH 49 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC-----------CCCCCCCCc
Confidence 7999999999999999994211 012456777777765411 113578899
Q ss_pred cchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC---CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCC
Q 004205 226 GSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG---CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQG 302 (768)
Q Consensus 226 GTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 302 (768)
||||||||+|+.. +.+.||||+|+|+.+|+..... .....+++|++||.+.|++|||||||......
T Consensus 50 GT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~ 119 (261)
T cd07493 50 GTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDN 119 (261)
T ss_pred hhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC
Confidence 9999999999752 2358999999999999976432 34567899999999999999999999875211
Q ss_pred C----------CchhHHHHHHHHhhcCCcEEEEeccCCCC-C---CCcccCCCceEEEcccCCCccceeeEEeCCCceEe
Q 004205 303 D----------YFSDAISIGSFHATSRGILVVASAGNEGN-E---GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFT 368 (768)
Q Consensus 303 ~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~---~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~ 368 (768)
. .....+.++++.+.++|++||+||||+|. . ...|+..+++|+|||..
T Consensus 120 ~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~------------------ 181 (261)
T cd07493 120 PTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD------------------ 181 (261)
T ss_pred cccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec------------------
Confidence 1 11245778888899999999999999997 2 34577788999999742
Q ss_pred cccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEc
Q 004205 369 GESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVD 448 (768)
Q Consensus 369 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n 448 (768)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCce
Q 004205 449 EPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLN 528 (768)
Q Consensus 449 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 528 (768)
..+.++.||++||+. ++++||||+|||.+
T Consensus 182 -------------------------------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~ 210 (261)
T cd07493 182 -------------------------------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTG 210 (261)
T ss_pred -------------------------------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCC
Confidence 114578899999987 78999999999999
Q ss_pred EEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 529 IIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 529 I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
|++.... ..|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 211 ~~~~~~~----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 211 IYVINGD----GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred eEEEcCC----CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9986442 56999999999999999999999999999999999999999985
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=2e-43 Score=383.29 Aligned_cols=218 Identities=24% Similarity=0.296 Sum_probs=164.9
Q ss_pred CCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC---CCHHHHHHHHHHHHHcCCcEEEeccC
Q 004205 220 RDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG---CYDVDLLAAFDDAIRDGVHILSLSLG 296 (768)
Q Consensus 220 ~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG 296 (768)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 478899999999999986432 2358999999999999987532 23467999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHH-hhcCCcEEEEeccCCCC-CCC--ccc-CCCceEEEcccCCCccceeeEEeCCCceEeccc
Q 004205 297 PEAPQGDYFSDAISIGSFH-ATSRGILVVASAGNEGN-EGS--VTN-LAPWMFTIAASSTDRDFTSEIVLGDGANFTGES 371 (768)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~-~~~--~~~-~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~ 371 (768)
.... .. ....+..++.+ +.++|+++|+||||+|+ ..+ .|+ ..+++|+|||+........
T Consensus 254 ~~~~-~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~-------------- 317 (412)
T cd04857 254 EATH-WP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAA-------------- 317 (412)
T ss_pred cCCC-Cc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccc--------------
Confidence 8751 11 11233344443 34799999999999998 443 343 5789999998532210000
Q ss_pred ccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCC
Q 004205 372 LSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPG 451 (768)
Q Consensus 372 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~ 451 (768)
....
T Consensus 318 ----------------------------~y~~------------------------------------------------ 321 (412)
T cd04857 318 ----------------------------EYSL------------------------------------------------ 321 (412)
T ss_pred ----------------------------cccc------------------------------------------------
Confidence 0000
Q ss_pred CCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEE
Q 004205 452 KDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIA 531 (768)
Q Consensus 452 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~S 531 (768)
.....+.++.||||||+. ++++||||+|||+.|.|
T Consensus 322 -------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s 356 (412)
T cd04857 322 -------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIAS 356 (412)
T ss_pred -------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEE
Confidence 011235689999999998 89999999999999988
Q ss_pred EecCCCCCcceEEeccccchhHHHHHHHHHHHH----hCCCCCHHHHHHHHHhhccc
Q 004205 532 AWSPAVGKMQFNILSGTSMACPHVTGIATLIKA----VHPSWSPSAIKSAIMTTATA 584 (768)
Q Consensus 532 a~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~ 584 (768)
+-.. ....|..|+|||||||||||++|||++ ++|+|+|.+||++|++||++
T Consensus 357 ~p~~--~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~ 411 (412)
T cd04857 357 VPNW--TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411 (412)
T ss_pred cccC--CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence 6322 224589999999999999999999985 47899999999999999985
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-43 Score=372.74 Aligned_cols=251 Identities=33% Similarity=0.474 Sum_probs=202.3
Q ss_pred CcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCC
Q 004205 144 QVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSS 223 (768)
Q Consensus 144 g~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~ 223 (768)
|+||+|+|||+|||++||+|.+.... ...+.... .......|..
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~~---------~~~~~~~d~~ 44 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNTV---------NGRTTPYDDN 44 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------cccccccc---------cCCCCCCCCC
Confidence 49999999999999999999753210 01111100 0113456778
Q ss_pred CCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHc----CCcEEEeccCCC
Q 004205 224 GHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRD----GVHILSLSLGPE 298 (768)
Q Consensus 224 gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIN~SlG~~ 298 (768)
+|||||||+|+|...+. ...+.||||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||..
T Consensus 45 ~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~ 117 (264)
T cd07487 45 GHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAP 117 (264)
T ss_pred CchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCC
Confidence 99999999999986432 22359999999999999998766 6778999999999998 999999999988
Q ss_pred CCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC--CcccCCCceEEEcccCCCccceeeEEeCCCceEeccccccc
Q 004205 299 APQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EG--SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLC 375 (768)
Q Consensus 299 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~ 375 (768)
. ......+.+..+++++.++|++||+||||++. .. ..++..+++|+|||+..+..
T Consensus 118 ~-~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------- 175 (264)
T cd07487 118 P-DPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------- 175 (264)
T ss_pred C-CCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------
Confidence 6 22346678888999999999999999999998 43 66788899999998543210
Q ss_pred ccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCC
Q 004205 376 KMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVA 455 (768)
Q Consensus 376 p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~ 455 (768)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecC
Q 004205 456 IPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSP 535 (768)
Q Consensus 456 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~ 535 (768)
....++.||++||+. ++++||||+|||++|+++.+.
T Consensus 176 ------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~ 211 (264)
T cd07487 176 ------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSP 211 (264)
T ss_pred ------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccc
Confidence 113478899999998 899999999999999997542
Q ss_pred -----CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 536 -----AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 536 -----~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
....+.|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 212 ~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 212 GGNPGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccccCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 123456999999999999999999999999999999999999999985
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.5e-43 Score=374.66 Aligned_cols=260 Identities=29% Similarity=0.339 Sum_probs=199.0
Q ss_pred CcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccc
Q 004205 135 EIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETV 214 (768)
Q Consensus 135 ~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 214 (768)
.+|..+++| +||+|+|||||||++||+|.+..... +...+..++..... ...
T Consensus 1 ~aw~~g~~G-~gv~IaviDtGid~~Hp~~~~~~~~~-------------------------~~~~~~~~~~~~~~--~~~ 52 (273)
T cd07485 1 AAWEFGTGG-PGIIVAVVDTGVDGTHPDLQGNGDGD-------------------------GYDPAVNGYNFVPN--VGD 52 (273)
T ss_pred CccccccCC-CCcEEEEEeCCCCCCChhhccCCCCC-------------------------CcccccCCcccccc--cCC
Confidence 479999999 99999999999999999998651100 00000000000000 000
Q ss_pred cCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEe
Q 004205 215 SFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSL 293 (768)
Q Consensus 215 ~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 293 (768)
......|..||||||||||+|+..+....-|+ ..+.|+||+|+|+.+|++...+ +....+++||+||++.|++||||
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~ 130 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQN 130 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEe
Confidence 01234577899999999999976543222122 1346799999999999998754 77788999999999999999999
Q ss_pred ccCCCCCCCCCchhHHHHHHHHhhcC-------CcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 294 SLGPEAPQGDYFSDAISIGSFHATSR-------GILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 294 SlG~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
|||.... ..+...+..+++.+.++ |++||+||||++. ....|+..+++|+||+++.
T Consensus 131 S~g~~~~--~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~-------------- 194 (273)
T cd07485 131 SWGGTGG--GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT-------------- 194 (273)
T ss_pred cCCCCCc--cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC--------------
Confidence 9998741 23455677777788777 9999999999998 5555888899999997431
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
.+.++.||++|+.. ||+||
T Consensus 195 -----------------------------------------------------~~~~~~~S~~g~~~--------~i~ap 213 (273)
T cd07485 195 -----------------------------------------------------NDNKASFSNYGRWV--------DIAAP 213 (273)
T ss_pred -----------------------------------------------------CCCcCccccCCCce--------EEEeC
Confidence 14567899999987 99999
Q ss_pred Cc-eEEEEecCC--CCCcceEEeccccchhHHHHHHHHHHHHhCCC-CCHHHHHHHHHhh
Q 004205 526 GL-NIIAAWSPA--VGKMQFNILSGTSMACPHVTGIATLIKAVHPS-WSPSAIKSAIMTT 581 (768)
Q Consensus 526 G~-~I~Sa~~~~--~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-lsp~~ik~~L~~T 581 (768)
|. .|+++++.. .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 214 G~~~i~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 214 GVGTILSTVPKLDGDGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCccccccccccCCCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 99 999987742 12356999999999999999999999999999 9999999999986
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=2.5e-43 Score=369.37 Aligned_cols=231 Identities=30% Similarity=0.423 Sum_probs=195.0
Q ss_pred cCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccccccccccc
Q 004205 136 IPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVS 215 (768)
Q Consensus 136 ~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 215 (768)
+|..+++| +||+|||||+||+++||+|.+. +...+.+..+
T Consensus 17 ~~~~~~~G-~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------ 56 (255)
T cd04077 17 YYYDSSTG-SGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------ 56 (255)
T ss_pred eEecCCCC-CCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC------------
Confidence 67778999 9999999999999999999632 2222333222
Q ss_pred CCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHc-----CCc
Q 004205 216 FRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRD-----GVH 289 (768)
Q Consensus 216 ~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~d 289 (768)
....|..+|||||||||+++. .||||+|+|+.+|+++..+ ...+.++++++|+++. +++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ 121 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPA 121 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCe
Confidence 125578899999999999864 7999999999999998765 6778899999999987 489
Q ss_pred EEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC--CCCcccCCCceEEEcccCCCccceeeEEeCCCceE
Q 004205 290 ILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN--EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANF 367 (768)
Q Consensus 290 VIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~--~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~ 367 (768)
|||||||... ...+..+++.+.++|+++|+||||+|. ....|+..+++|+|||.+.
T Consensus 122 iin~S~g~~~------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~---------------- 179 (255)
T cd04077 122 VANMSLGGGA------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS---------------- 179 (255)
T ss_pred EEEeCCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC----------------
Confidence 9999999873 456777788899999999999999998 4667888899999997532
Q ss_pred ecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEE
Q 004205 368 TGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILV 447 (768)
Q Consensus 368 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~ 447 (768)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCc
Q 004205 448 DEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGL 527 (768)
Q Consensus 448 n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~ 527 (768)
.+.++.||++||.. ||+|||.
T Consensus 180 ---------------------------------------------------~~~~~~~S~~g~~~--------~i~apG~ 200 (255)
T cd04077 180 ---------------------------------------------------DDARASFSNYGSCV--------DIFAPGV 200 (255)
T ss_pred ---------------------------------------------------CCCccCcccCCCCC--------cEEeCCC
Confidence 13478899999987 9999999
Q ss_pred eEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhccc
Q 004205 528 NIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATA 584 (768)
Q Consensus 528 ~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~ 584 (768)
+|.++... ..+.|..++|||||||+|||++|||+|++|+++++|||++|++||++
T Consensus 201 ~i~~~~~~--~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 201 DILSAWIG--SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CeEecccC--CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99998773 23579999999999999999999999999999999999999999973
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-43 Score=377.69 Aligned_cols=254 Identities=26% Similarity=0.293 Sum_probs=185.6
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCcc
Q 004205 148 IVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGS 227 (768)
Q Consensus 148 ~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 227 (768)
+|||||||||.+||+|.+. +.....+... + ....|..||||
T Consensus 2 ~VaviDtGi~~~hp~l~~~---------------------------~~~~~~~~~~-----------~-~~~~d~~gHGT 42 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA---------------------------LAEDDLDSDE-----------P-GWTADDLGHGT 42 (291)
T ss_pred EEEEecCCCCCCChhhhhh---------------------------hccccccccC-----------C-CCcCCCCCChH
Confidence 7999999999999999632 1111111111 0 11568899999
Q ss_pred hhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-----CCHHHHHHHHHHHHHcC---CcEEEeccCCCC
Q 004205 228 HTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-----CYDVDLLAAFDDAIRDG---VHILSLSLGPEA 299 (768)
Q Consensus 228 HVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIN~SlG~~~ 299 (768)
||||||++....+ ....|+||+|+|+.+|++...+ ....++++||+|+++.+ ++|||||||...
T Consensus 43 ~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~ 114 (291)
T cd04847 43 AVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPL 114 (291)
T ss_pred HHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCC
Confidence 9999998755321 2348999999999999998763 45678999999999853 499999999875
Q ss_pred CCCCCchhHHHHHHHH-hhcCCcEEEEeccCCCC-CCC------------cccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 300 PQGDYFSDAISIGSFH-ATSRGILVVASAGNEGN-EGS------------VTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 300 ~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~-~~~------------~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
.........+..++++ +.++|++||+||||++. ... .|+.++++|+|||.+.+........
T Consensus 115 ~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~----- 189 (291)
T cd04847 115 PIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR----- 189 (291)
T ss_pred CccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc-----
Confidence 2111112245555544 56899999999999998 321 3567789999998764421000000
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
. |
T Consensus 190 ----------------------------------------------------------~---------------~----- 191 (291)
T cd04847 190 ----------------------------------------------------------Y---------------S----- 191 (291)
T ss_pred ----------------------------------------------------------c---------------c-----
Confidence 0 0
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
.......+.||++||.. ++.+||||+||
T Consensus 192 --------------------------------------------------~~~~~~~~~fs~~Gp~~--~~~~KPDl~ap 219 (291)
T cd04847 192 --------------------------------------------------AVGPAPAGATTSSGPGS--PGPIKPDVVAF 219 (291)
T ss_pred --------------------------------------------------ccccccCCCccccCCCC--CCCcCCcEEee
Confidence 00112233499999998 89999999999
Q ss_pred CceEEEEecC--------------CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 526 GLNIIAAWSP--------------AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 526 G~~I~Sa~~~--------------~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
|++|.++... ......|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 220 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 220 GGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999875431 123456999999999999999999999999999999999999999985
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=7e-43 Score=367.16 Aligned_cols=248 Identities=30% Similarity=0.380 Sum_probs=206.6
Q ss_pred cccccccCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCc
Q 004205 125 FMGLMGEESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGY 204 (768)
Q Consensus 125 ~~g~~~~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~ 204 (768)
.|.++.+++..+|..+ +| +||+|||||+|||++||+|.. .++...+.+.++
T Consensus 10 ~w~~~~~~~~~~~~~~-~G-~gv~I~viDsGi~~~h~~l~~--------------------------~~~~~~~~~~~~- 60 (260)
T cd07484 10 QWNLDQIGAPKAWDIT-GG-SGVTVAVVDTGVDPTHPDLLK--------------------------VKFVLGYDFVDN- 60 (260)
T ss_pred CCCccccChHHHHhhc-CC-CCCEEEEEeCCCCCCCccccc--------------------------CCcccceeccCC-
Confidence 3566666788999988 78 999999999999999999842 223333333322
Q ss_pred cccccccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHH
Q 004205 205 EAEEDIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDA 283 (768)
Q Consensus 205 ~~~~~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a 283 (768)
...+.|..+|||||||||++...+. ..+.|+||+|+|+.+|+++..+ +...++++||+++
T Consensus 61 -----------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a 121 (260)
T cd07484 61 -----------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYA 121 (260)
T ss_pred -----------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHH
Confidence 1235578899999999999875332 2348999999999999998755 7788999999999
Q ss_pred HHcCCcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeC
Q 004205 284 IRDGVHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLG 362 (768)
Q Consensus 284 ~~~g~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~ 362 (768)
++.|++|||||||... ....+..++..+.++|++||+||||+|. ....|+..+++|+||+.+.
T Consensus 122 ~~~~~~iin~S~g~~~-----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------- 185 (260)
T cd07484 122 ADKGAKVINLSLGGGL-----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ----------- 185 (260)
T ss_pred HHCCCeEEEecCCCCC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-----------
Confidence 9999999999999874 3456777788888999999999999999 7788899999999997431
Q ss_pred CCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCce
Q 004205 363 DGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGV 442 (768)
Q Consensus 363 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~ 442 (768)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCce
Q 004205 443 GMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDV 522 (768)
Q Consensus 443 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 522 (768)
.+.++.||++|+.. |+
T Consensus 186 --------------------------------------------------------~~~~~~~s~~g~~~--------~~ 201 (260)
T cd07484 186 --------------------------------------------------------DDKRASFSNYGKWV--------DV 201 (260)
T ss_pred --------------------------------------------------------CCCcCCcCCCCCCc--------eE
Confidence 14567899999887 99
Q ss_pred eeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccc
Q 004205 523 TAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATAL 585 (768)
Q Consensus 523 ~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~ 585 (768)
+|||.+|+++.+. ..|..++|||||||+|||++||+++++| +++++||++|++||+++
T Consensus 202 ~apG~~i~~~~~~----~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 202 SAPGGGILSTTPD----GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred EeCCCCcEeecCC----CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 9999999998764 5699999999999999999999999999 99999999999999864
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-42 Score=364.01 Aligned_cols=252 Identities=31% Similarity=0.391 Sum_probs=189.3
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGH 225 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 225 (768)
||+|||||+|||++||+|.+. +.....|..+. ........|..+|
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~--------~~~~~~~~d~~~H 45 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR--------RISATEVFDAGGH 45 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC--------CCCCCCCCCCCCc
Confidence 799999999999999999643 11122222110 0111345578899
Q ss_pred cchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCc
Q 004205 226 GSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYF 305 (768)
Q Consensus 226 GTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~ 305 (768)
||||||||+|+..+ +...||||+|+|+.+|++...++..+++++||+|+++.+++|||||||.... .
T Consensus 46 GT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~----~ 112 (254)
T cd07490 46 GTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYY----S 112 (254)
T ss_pred HHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCC----C
Confidence 99999999998641 2348999999999999998777788999999999999999999999998751 1
Q ss_pred hhHHHHHHHHhhc-CCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhc
Q 004205 306 SDAISIGSFHATS-RGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARI 383 (768)
Q Consensus 306 ~~~~~~a~~~a~~-~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 383 (768)
.+.+..+++.+.+ +|++||+||||+|. ....++..+++|+|||++.+......
T Consensus 113 ~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~------------------------- 167 (254)
T cd07490 113 EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWF------------------------- 167 (254)
T ss_pred CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCc-------------------------
Confidence 4556666655554 69999999999998 77788889999999986533210000
Q ss_pred cccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEE
Q 004205 384 ISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSA 463 (768)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 463 (768)
T Consensus 168 -------------------------------------------------------------------------------- 167 (254)
T cd07490 168 -------------------------------------------------------------------------------- 167 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceE
Q 004205 464 VVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFN 543 (768)
Q Consensus 464 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~ 543 (768)
..........++.+|.. .....||||+|||.+|+++.........|.
T Consensus 168 --------------------------------s~~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~~~~~~~~ 214 (254)
T cd07490 168 --------------------------------SSFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGANGDGQYT 214 (254)
T ss_pred --------------------------------cCCcccccccccCCCCC-ccCCcCceEEeccCCeEccccCCCCCCCee
Confidence 00000112222334433 245689999999999999653323446799
Q ss_pred EeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 544 ILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 544 ~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
.++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 215 ~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 215 RLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999985
No 23
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-42 Score=366.47 Aligned_cols=248 Identities=25% Similarity=0.292 Sum_probs=184.9
Q ss_pred cCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc
Q 004205 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI 210 (768)
Q Consensus 131 ~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 210 (768)
+++..+|+++.+| +||+|||||||||..|| |....+. +...+..+
T Consensus 8 l~~~~~~~~G~~G-~Gv~VaViDTGv~~~h~-~~~~~~~--------------------------~~~~~~~~------- 52 (298)
T cd07494 8 LNATRVHQRGITG-RGVRVAMVDTGFYAHPF-FESRGYQ--------------------------VRVVLAPG------- 52 (298)
T ss_pred cChhHHHhcCCCC-CCcEEEEEeCCCcCCch-hhcCCcc--------------------------ceeecCCC-------
Confidence 3466899999999 99999999999999998 6532210 00011110
Q ss_pred cccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCCcE
Q 004205 211 VETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHI 290 (768)
Q Consensus 211 ~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~dV 290 (768)
......|++||||||||++ .||||+|+|+.+|+++. ..+++++||+||++++++|
T Consensus 53 ----~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dV 107 (298)
T cd07494 53 ----ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDI 107 (298)
T ss_pred ----CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCE
Confidence 0123567889999999876 58999999999999853 5677999999999999999
Q ss_pred EEeccCCCCCCCC--------CchhHHHHHHHHhhcCCcEEEEeccCCCCCCCcccCCCceEEEcccCCCccceeeEEeC
Q 004205 291 LSLSLGPEAPQGD--------YFSDAISIGSFHATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLG 362 (768)
Q Consensus 291 IN~SlG~~~~~~~--------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~ 362 (768)
||||||....... .....+..++++|.++|++||+||||++. .+|+..|++|+|||++.+..-
T Consensus 108 In~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~--~~Pa~~p~viaVga~~~~~~g------- 178 (298)
T cd07494 108 ISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW--SFPAQHPEVIAAGGVFVDEDG------- 178 (298)
T ss_pred EEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC--CcCCCCCCEEEEEeEeccCCC-------
Confidence 9999998641110 12346888888999999999999999985 568899999999986433210
Q ss_pred CCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCce
Q 004205 363 DGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGV 442 (768)
Q Consensus 363 ~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~ 442 (768)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCcccccc--CCCCCCCCCCcccC
Q 004205 443 GMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFS--SKGPNALNPEILKP 520 (768)
Q Consensus 443 g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS--s~Gp~~~~~~~~KP 520 (768)
.....++ ++.... .+++.||
T Consensus 179 ---------------------------------------------------------~~~~~~~~~~~~s~~-~~g~~~p 200 (298)
T cd07494 179 ---------------------------------------------------------ARRASSYASGFRSKI-YPGRQVP 200 (298)
T ss_pred ---------------------------------------------------------cccccccccCccccc-CCCCccC
Confidence 0000111 111111 2466777
Q ss_pred ce----------------eeCCceEEEEecC----CCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 004205 521 DV----------------TAPGLNIIAAWSP----AVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMT 580 (768)
Q Consensus 521 DI----------------~APG~~I~Sa~~~----~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~ 580 (768)
|+ +|||..|.++... ...+..|..++|||||||||||++|||+|++|.|+++|||++|++
T Consensus 201 d~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ 280 (298)
T cd07494 201 DVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPDGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNK 280 (298)
T ss_pred ccccccCcCCcccccccccCCCcceeccccCCCCCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 76 4799999765431 122356999999999999999999999999999999999999999
Q ss_pred hcccc
Q 004205 581 TATAL 585 (768)
Q Consensus 581 TA~~~ 585 (768)
||+++
T Consensus 281 ta~~~ 285 (298)
T cd07494 281 TARDV 285 (298)
T ss_pred hCccc
Confidence 99965
No 24
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-42 Score=367.26 Aligned_cols=197 Identities=32% Similarity=0.426 Sum_probs=166.9
Q ss_pred CCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHH----------HcC
Q 004205 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAI----------RDG 287 (768)
Q Consensus 218 ~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~----------~~g 287 (768)
...+..+|||||||||+|...++ . .+.||||+|+|+.+|+++..+...+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~---~-----~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG---V-----GVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC---C-----CceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 34567899999999999987532 2 34899999999999999877778899999999998 457
Q ss_pred CcEEEeccCCCCCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-C-CCcccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 288 VHILSLSLGPEAPQGDYFSDAISIGSFHATSRGILVVASAGNEGN-E-GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 288 ~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~-~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
++|||||||... .....+..++..+.++|++||+||||++. . ...|+..+++|+|||++.
T Consensus 138 ~~Iin~S~G~~~----~~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------- 199 (285)
T cd07496 138 AKVINLSLGGDG----ACSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL-------------- 199 (285)
T ss_pred CeEEEeCCCCCC----CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC--------------
Confidence 899999999875 11557778888999999999999999998 3 677888899999997431
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
.+.++.||++|+.. ||+||
T Consensus 200 -----------------------------------------------------~~~~~~~S~~g~~v--------di~ap 218 (285)
T cd07496 200 -----------------------------------------------------RGQRASYSNYGPAV--------DVSAP 218 (285)
T ss_pred -----------------------------------------------------CCCcccccCCCCCC--------CEEeC
Confidence 24578899999987 99999
Q ss_pred CceEEEEecCC-----------CCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 004205 526 GLNIIAAWSPA-----------VGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTT 581 (768)
Q Consensus 526 G~~I~Sa~~~~-----------~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 581 (768)
|++|.++.... .....|..++|||||||+|||++||++|++|+|++++||++|++|
T Consensus 219 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 219 GGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999886531 123468999999999999999999999999999999999999986
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.9e-42 Score=354.60 Aligned_cols=234 Identities=27% Similarity=0.383 Sum_probs=187.5
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCc
Q 004205 147 IIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHG 226 (768)
Q Consensus 147 V~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 226 (768)
|+|||||+|||++||+|.+.. ++...+.+... .....|..+||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~------------~~~~~~~~~HG 43 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN------------NDPTSDIDGHG 43 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC------------CCCCCCCCCCH
Confidence 689999999999999997520 01111111111 01345788999
Q ss_pred chhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCCc
Q 004205 227 SHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDYF 305 (768)
Q Consensus 227 THVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~ 305 (768)
|||||||+|+..+. ..+.||||+|+|+.+|++...+ +...++.++++|+++.+++|||||||... .....
T Consensus 44 T~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~-~~~~~ 114 (242)
T cd07498 44 TACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSD-STESI 114 (242)
T ss_pred HHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCC-CCchH
Confidence 99999999976432 2348999999999999998664 67788999999999999999999999875 22234
Q ss_pred hhHHHHHHHHhhc-CCcEEEEeccCCCC-CCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhc
Q 004205 306 SDAISIGSFHATS-RGILVVASAGNEGN-EGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARI 383 (768)
Q Consensus 306 ~~~~~~a~~~a~~-~Gi~vV~AAGN~g~-~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 383 (768)
...+..++..+.. +|+++|+||||+|. ....++..+++|+|||.+.
T Consensus 115 ~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~-------------------------------- 162 (242)
T cd07498 115 SSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS-------------------------------- 162 (242)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC--------------------------------
Confidence 5677888888888 99999999999998 5557888999999997531
Q ss_pred cccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEE
Q 004205 384 ISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSA 463 (768)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 463 (768)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCC-----CC
Q 004205 464 VVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPA-----VG 538 (768)
Q Consensus 464 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~-----~~ 538 (768)
.+.++.||+|||.. |++|||+++.++.... ..
T Consensus 163 -----------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~ 199 (242)
T cd07498 163 -----------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYP 199 (242)
T ss_pred -----------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCC
Confidence 14578899999987 9999999998874321 12
Q ss_pred CcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 004205 539 KMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTT 581 (768)
Q Consensus 539 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 581 (768)
...|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 200 ~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 200 GGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 3568999999999999999999999999999999999999976
No 26
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.3e-41 Score=362.18 Aligned_cols=271 Identities=29% Similarity=0.343 Sum_probs=200.7
Q ss_pred CCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCC
Q 004205 139 FSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRS 218 (768)
Q Consensus 139 ~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 218 (768)
++++| +||+|||||||||++||+|.+... .+..| ..+++.....+.+ .
T Consensus 2 ~g~tG-~gv~VaviDtGi~~~hp~l~~~~~------------~~~~~----~~~~~~~~~~~~~---------------~ 49 (293)
T cd04842 2 LGLTG-KGQIVGVADTGLDTNHCFFYDPNF------------NKTNL----FHRKIVRYDSLSD---------------T 49 (293)
T ss_pred CCcCC-cCCEEEEEecCCCCCCCcccCCCc------------CcCcc----CcccEEEeeccCC---------------C
Confidence 57889 999999999999999999975421 01111 1334444333322 1
Q ss_pred CCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC--CCHHHHHHHHHHHHHcCCcEEEeccC
Q 004205 219 PRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG--CYDVDLLAAFDDAIRDGVHILSLSLG 296 (768)
Q Consensus 219 ~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG 296 (768)
..|..+|||||||||+|+..+... ...+.||||+|+|+.+|++...+ ....++.++++++.+.+++|||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G 124 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWG 124 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCC
Confidence 227899999999999998754321 11359999999999999998665 55677899999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHhh--cCCcEEEEeccCCCC-C---CCcccCCCceEEEcccCCCccceeeEEeCCCceEecc
Q 004205 297 PEAPQGDYFSDAISIGSFHAT--SRGILVVASAGNEGN-E---GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGE 370 (768)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~~a~--~~Gi~vV~AAGN~g~-~---~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~ 370 (768)
..... .......+++++. .+|++||+||||++. . ...++..+++|+|||++......
T Consensus 125 ~~~~~---~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~-------------- 187 (293)
T cd04842 125 SPVNN---GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN-------------- 187 (293)
T ss_pred CCCcc---ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc--------------
Confidence 88521 1233344444433 389999999999998 3 36788899999999876442100
Q ss_pred cccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCC
Q 004205 371 SLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEP 450 (768)
Q Consensus 371 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~ 450 (768)
...|..
T Consensus 188 ----------------------------~~~~~~---------------------------------------------- 193 (293)
T cd04842 188 ----------------------------GEGGLG---------------------------------------------- 193 (293)
T ss_pred ----------------------------cccccc----------------------------------------------
Confidence 000000
Q ss_pred CCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEE
Q 004205 451 GKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNII 530 (768)
Q Consensus 451 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 530 (768)
.......++.||++||+. ++++||||+|||++|+
T Consensus 194 --------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~ 227 (293)
T cd04842 194 --------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGIL 227 (293)
T ss_pred --------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeE
Confidence 012336789999999987 7999999999999999
Q ss_pred EEecC-----CCCCcceEEeccccchhHHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhhcc
Q 004205 531 AAWSP-----AVGKMQFNILSGTSMACPHVTGIATLIKAVH-----P---SWSPSAIKSAIMTTAT 583 (768)
Q Consensus 531 Sa~~~-----~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~lsp~~ik~~L~~TA~ 583 (768)
++... ......|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 228 SARSGGGGIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred eccCCCCCCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99642 1233568999999999999999999999985 4 6667799999999985
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-41 Score=360.84 Aligned_cols=265 Identities=31% Similarity=0.406 Sum_probs=184.5
Q ss_pred CCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCC
Q 004205 138 GFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFR 217 (768)
Q Consensus 138 ~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 217 (768)
..+++| +||+|||||+|||.+||+|.+.. +....|.+. .
T Consensus 2 ~~~~tG-~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~-------------~ 40 (297)
T cd07480 2 TSPFTG-AGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG-------------E 40 (297)
T ss_pred CCCCCC-CCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC-------------C
Confidence 356889 99999999999999999997431 111122211 2
Q ss_pred CCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccC
Q 004205 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLG 296 (768)
Q Consensus 218 ~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG 296 (768)
...|..||||||||||+|+..+ +...||||+|+|+.+|++...+ +....+++||+||++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2467889999999999997643 2237999999999999997654 66777999999999999999999999
Q ss_pred CCCC--------CCCCchhHHHHHHHHh---------------hcCCcEEEEeccCCCC-CCCc-----ccCCCceEEEc
Q 004205 297 PEAP--------QGDYFSDAISIGSFHA---------------TSRGILVVASAGNEGN-EGSV-----TNLAPWMFTIA 347 (768)
Q Consensus 297 ~~~~--------~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~-~~~~-----~~~~p~vitVg 347 (768)
...+ ........++...+.+ .++|++||+||||++. .... +...+.+++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~ 191 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVA 191 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEE
Confidence 8541 1111222333333333 6899999999999986 2211 11122333333
Q ss_pred ccCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCch
Q 004205 348 ASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTE 427 (768)
Q Consensus 348 As~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~ 427 (768)
+...
T Consensus 192 ~V~~---------------------------------------------------------------------------- 195 (297)
T cd07480 192 AVGA---------------------------------------------------------------------------- 195 (297)
T ss_pred EECC----------------------------------------------------------------------------
Confidence 2110
Q ss_pred hHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccC
Q 004205 428 SKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSS 507 (768)
Q Consensus 428 ~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs 507 (768)
.+....|++
T Consensus 196 -----------------------------------------------------------------------~~~~~~~~~ 204 (297)
T cd07480 196 -----------------------------------------------------------------------LGRTGNFSA 204 (297)
T ss_pred -----------------------------------------------------------------------CCCCCCccc
Confidence 011222333
Q ss_pred CCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccC
Q 004205 508 KGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDK 587 (768)
Q Consensus 508 ~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~ 587 (768)
+.+. ...||||+|||.+|+++.+. +.|..++|||||||+|||++||++|++|.+++.+++.+|++.......
T Consensus 205 ~~~~----~~~~~dv~ApG~~i~s~~~~----~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~ 276 (297)
T cd07480 205 VANF----SNGEVDIAAPGVDIVSAAPG----GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAART 276 (297)
T ss_pred cCCC----CCCceEEEeCCCCeEeecCC----CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhccc
Confidence 3221 23578999999999999774 569999999999999999999999999999998888888754332100
Q ss_pred CCCCccCCCCCCCCCCCcccccccCcc
Q 004205 588 NHKPITVDPKGRRGNAFDYGSGFLNPR 614 (768)
Q Consensus 588 ~g~p~~~~~~~~~~~~~~~G~G~vn~~ 614 (768)
. ..........+|+|++++.
T Consensus 277 ~-------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 277 T-------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred C-------CCCCCCChhhcCCceeecC
Confidence 0 0233456678999999875
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.7e-41 Score=355.58 Aligned_cols=241 Identities=22% Similarity=0.189 Sum_probs=177.0
Q ss_pred CCCCcCCCCC-CCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc
Q 004205 132 ESMEIPGFST-KNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI 210 (768)
Q Consensus 132 ~~~~~~~~~~-~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 210 (768)
++.++|+... .| +||+|+|||+|||.+||||.+.... . ..+
T Consensus 3 ~~~~aw~~~~g~G-~gV~VaviDtGid~~Hpdl~~~~~~--------------------------~----~~~------- 44 (277)
T cd04843 3 NARYAWTKPGGSG-QGVTFVDIEQGWNLNHEDLVGNGIT--------------------------L----ISG------- 44 (277)
T ss_pred ChHHHHHhcCCCC-CcEEEEEecCCCCCCChhhcccccc--------------------------c----cCC-------
Confidence 4668898755 47 9999999999999999999743110 0 000
Q ss_pred cccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH----c
Q 004205 211 VETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR----D 286 (768)
Q Consensus 211 ~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~----~ 286 (768)
..+.|+++|||||||||+|..+ -.| +.||||+|+|+.+|+++ .++++++|.+|++ .
T Consensus 45 ------~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~ 104 (277)
T cd04843 45 ------LTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPG 104 (277)
T ss_pred ------CCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCC
Confidence 1145778999999999998642 123 48999999999999985 3456667777766 4
Q ss_pred CCcEEEeccCCCCCCC----CCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC--Cc----------cc-CCCceEEEcc
Q 004205 287 GVHILSLSLGPEAPQG----DYFSDAISIGSFHATSRGILVVASAGNEGN-EG--SV----------TN-LAPWMFTIAA 348 (768)
Q Consensus 287 g~dVIN~SlG~~~~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~--~~----------~~-~~p~vitVgA 348 (768)
++.+||||||...... ......+..++.++.++|++||+||||++. .. .. ++ ..+++|+|||
T Consensus 105 ~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA 184 (277)
T cd04843 105 DVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGA 184 (277)
T ss_pred CEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEe
Confidence 5778999999874111 012345667888889999999999999986 11 10 11 1245777776
Q ss_pred cCCCccceeeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchh
Q 004205 349 SSTDRDFTSEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTES 428 (768)
Q Consensus 349 s~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~ 428 (768)
++.+
T Consensus 185 ~~~~---------------------------------------------------------------------------- 188 (277)
T cd04843 185 GSST---------------------------------------------------------------------------- 188 (277)
T ss_pred ccCC----------------------------------------------------------------------------
Confidence 4211
Q ss_pred HHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCC
Q 004205 429 KLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSK 508 (768)
Q Consensus 429 ~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~ 508 (768)
....++.||||
T Consensus 189 ---------------------------------------------------------------------~~~~~~~fSn~ 199 (277)
T cd04843 189 ---------------------------------------------------------------------TGHTRLAFSNY 199 (277)
T ss_pred ---------------------------------------------------------------------CCCccccccCC
Confidence 01237899999
Q ss_pred CCCCCCCCcccCceeeCCceEEEEecCCC------CCcceEEeccccchhHHHHHHHHHHHH----h-CCCCCHHHHHHH
Q 004205 509 GPNALNPEILKPDVTAPGLNIIAAWSPAV------GKMQFNILSGTSMACPHVTGIATLIKA----V-HPSWSPSAIKSA 577 (768)
Q Consensus 509 Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~------~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~lsp~~ik~~ 577 (768)
|+.. ||+|||++|+++..... ....|..++|||||||||||++|||++ + +|+|+|+|||++
T Consensus 200 G~~v--------di~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~ 271 (277)
T cd04843 200 GSRV--------DVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMREL 271 (277)
T ss_pred CCcc--------ceEcCCCCeEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 9987 99999999999987421 112357899999999999999999975 3 499999999999
Q ss_pred HHhhcc
Q 004205 578 IMTTAT 583 (768)
Q Consensus 578 L~~TA~ 583 (768)
|++|++
T Consensus 272 L~~t~~ 277 (277)
T cd04843 272 LTATGT 277 (277)
T ss_pred HHhcCC
Confidence 999974
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-40 Score=348.83 Aligned_cols=250 Identities=29% Similarity=0.418 Sum_probs=189.7
Q ss_pred cceEEEEEeCCCCCCCCCCCCCCCC-CCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCC
Q 004205 145 VNIIVGFIDTGIWPESPSFSDIGMP-PAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSS 223 (768)
Q Consensus 145 ~GV~VgVIDtGid~~Hp~f~~~~~~-~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~ 223 (768)
+||+|||||||||++||+|.+.... .....+.+....+..|. ....++.+. ....++.|..
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------------~~~~~~~d~~ 63 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV-----DDIYGWNFV-------------NNDNDPMDDN 63 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc-----cCCCccccc-------------CCCCCCCCCC
Confidence 7999999999999999999864211 00011111111111110 001111110 1124567889
Q ss_pred CCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCC
Q 004205 224 GHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQG 302 (768)
Q Consensus 224 gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 302 (768)
+|||||||||+|...++. .+.||||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||...
T Consensus 64 ~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~--- 132 (259)
T cd07473 64 GHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG--- 132 (259)
T ss_pred CcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC---
Confidence 999999999999774332 248999999999999998776 78889999999999999999999999884
Q ss_pred CCchhHHHHHHHHhhcCCcEEEEeccCCCC-C---CCccc--CCCceEEEcccCCCccceeeEEeCCCceEecccccccc
Q 004205 303 DYFSDAISIGSFHATSRGILVVASAGNEGN-E---GSVTN--LAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCK 376 (768)
Q Consensus 303 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~---~~~~~--~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p 376 (768)
....+..++.++.++|++||+||||+|. . ...+. ..+++|+||+.+
T Consensus 133 --~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~-------------------------- 184 (259)
T cd07473 133 --PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD-------------------------- 184 (259)
T ss_pred --CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC--------------------------
Confidence 2567778888899999999999999987 2 23333 346788888643
Q ss_pred cccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCc
Q 004205 377 MNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAI 456 (768)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 456 (768)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCC
Q 004205 457 PFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPA 536 (768)
Q Consensus 457 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~ 536 (768)
..+.++.||++||.. ||+.|||.++++..+.
T Consensus 185 -----------------------------------------~~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~- 215 (259)
T cd07473 185 -----------------------------------------SNDALASFSNYGKKT-------VDLAAPGVDILSTSPG- 215 (259)
T ss_pred -----------------------------------------CCCCcCcccCCCCCC-------cEEEeccCCeEeccCC-
Confidence 124566799999863 5999999999997653
Q ss_pred CCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 537 VGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 537 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
..|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 216 ---~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 216 ---GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ---CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 56999999999999999999999999999999999999999985
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.3e-40 Score=343.33 Aligned_cols=225 Identities=33% Similarity=0.513 Sum_probs=185.6
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGH 225 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 225 (768)
||+|||||+||+++||+|.+. +.....|..+.+ ....|..+|
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~~-----------~~~~~~~~H 42 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDDN-----------NDYQDGNGH 42 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCCC-----------CCCCCCCCC
Confidence 799999999999999999642 112222222100 234578899
Q ss_pred cchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCC
Q 004205 226 GSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDY 304 (768)
Q Consensus 226 GTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~ 304 (768)
||||||||++..... .+.|+||+|+|+.+|+++..+ +...+++++++++++.|++|||||||...
T Consensus 43 GT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----- 108 (229)
T cd07477 43 GTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----- 108 (229)
T ss_pred HHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC-----
Confidence 999999999976322 348999999999999998766 66789999999999999999999999874
Q ss_pred chhHHHHHHHHhhcCCcEEEEeccCCCC-CCC--cccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccch
Q 004205 305 FSDAISIGSFHATSRGILVVASAGNEGN-EGS--VTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASA 381 (768)
Q Consensus 305 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~--~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 381 (768)
....+..++..+.++|+++|+||||++. ... .++..+++|+||+++.+
T Consensus 109 ~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------------- 159 (229)
T cd07477 109 DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN----------------------------- 159 (229)
T ss_pred CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-----------------------------
Confidence 3345667777889999999999999998 433 48888999999975321
Q ss_pred hccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceee
Q 004205 382 RIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIP 461 (768)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 461 (768)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcc
Q 004205 462 SAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQ 541 (768)
Q Consensus 462 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~ 541 (768)
+.++.||++|+.. |+.|||++|+++++. +.
T Consensus 160 --------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~----~~ 189 (229)
T cd07477 160 --------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN----ND 189 (229)
T ss_pred --------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC----CC
Confidence 4466899999976 999999999999774 55
Q ss_pred eEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 004205 542 FNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTT 581 (768)
Q Consensus 542 y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 581 (768)
|..++|||||||+|||++|||+|++|+++|++||++|++|
T Consensus 190 ~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 190 YAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred EEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999986
No 31
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=5.5e-41 Score=357.07 Aligned_cols=276 Identities=34% Similarity=0.522 Sum_probs=210.0
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCCcc
Q 004205 148 IVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGHGS 227 (768)
Q Consensus 148 ~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 227 (768)
+|||||||||++||+|.... + ...++.+.+.+.++. .......|..+|||
T Consensus 1 ~V~viDtGid~~h~~~~~~~-----------------~----~~~~~~~~~~~~~~~---------~~~~~~~~~~~HGT 50 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-----------------F----IWSKVPGGYNFVDGN---------PNPSPSDDDNGHGT 50 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-----------------E----EEEEEEEEEETTTTB---------STTTSSSTSSSHHH
T ss_pred CEEEEcCCcCCCChhHccCC-----------------c----ccccccceeeccCCC---------CCcCccccCCCccc
Confidence 69999999999999996111 0 012334455555442 11234567889999
Q ss_pred hhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHH-HcCCcEEEeccCCCCC-CCCCc
Q 004205 228 HTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAI-RDGVHILSLSLGPEAP-QGDYF 305 (768)
Q Consensus 228 HVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~~-~~~~~ 305 (768)
||||||+|.. . .. .....|+||+|+|+.+|++...+.....++++|++++ +.+++|||||||.... .....
T Consensus 51 ~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~ 123 (282)
T PF00082_consen 51 HVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSY 123 (282)
T ss_dssp HHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHH
T ss_pred hhhhhccccc-c-cc-----ccccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccc
Confidence 9999999986 2 11 1234899999999999998776677788999999999 8899999999998320 11123
Q ss_pred hhHHHHHHHHhhcCCcEEEEeccCCCC-CC---CcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccch
Q 004205 306 SDAISIGSFHATSRGILVVASAGNEGN-EG---SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASA 381 (768)
Q Consensus 306 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 381 (768)
...+..+++.+.++|+++|+||||+|. .. ..|+..+++|+||++..
T Consensus 124 ~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------------------ 173 (282)
T PF00082_consen 124 SDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------------------ 173 (282)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET------------------------------
T ss_pred ccccccccccccccCcceeecccccccccccccccccccccccccccccc------------------------------
Confidence 445667777888999999999999998 33 45667788899986421
Q ss_pred hccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceee
Q 004205 382 RIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIP 461 (768)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 461 (768)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcc
Q 004205 462 SAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQ 541 (768)
Q Consensus 462 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~ 541 (768)
.+.++.||++|+.. .++++||||+|||.+|+++++.. ....
T Consensus 174 -------------------------------------~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~-~~~~ 214 (282)
T PF00082_consen 174 -------------------------------------NGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGS-DRGS 214 (282)
T ss_dssp -------------------------------------TSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTT-ESEE
T ss_pred -------------------------------------cccccccccccccc-ccccccccccccccccccccccc-cccc
Confidence 13568899997654 27899999999999999998741 1145
Q ss_pred eEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCccccCC
Q 004205 542 FNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 542 y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (768)
|..++|||||||+|||++||++|++|++++++||.+|++||.+++.. ........||||++|+++|++
T Consensus 215 ~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~---------~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 215 YTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGST---------NGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSET---------TSSSSHHHHTTSBE-HHHHHH
T ss_pred ccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcC---------CCCCCCCCccCChhCHHHHhC
Confidence 88999999999999999999999999999999999999999976411 134556788999999999874
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-40 Score=343.67 Aligned_cols=215 Identities=24% Similarity=0.258 Sum_probs=166.3
Q ss_pred cceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCC
Q 004205 145 VNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSG 224 (768)
Q Consensus 145 ~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~g 224 (768)
++|+|||||||||++||+|.+. +...+.|........ .......|..|
T Consensus 3 ~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~~-----~~~~~~~d~~g 50 (247)
T cd07491 3 KRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDGN-----KVSPYYVSADG 50 (247)
T ss_pred CCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCcc-----cCCCCCCCCCC
Confidence 9999999999999999999642 112222222111000 00112357889
Q ss_pred CcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-------CCHHHHHHHHHHHHHcCCcEEEeccCC
Q 004205 225 HGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-------CYDVDLLAAFDDAIRDGVHILSLSLGP 297 (768)
Q Consensus 225 HGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIN~SlG~ 297 (768)
|||||||||+ |+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||.
T Consensus 51 HGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~ 112 (247)
T cd07491 51 HGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTI 112 (247)
T ss_pred cHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeec
Confidence 9999999994 589999999999998543 456789999999999999999999998
Q ss_pred CCCCC-CCchhHHHHHHHHhhcCCcEEEEeccCCCC-CC---CcccCCCceEEEcccCCCccceeeEEeCCCceEecccc
Q 004205 298 EAPQG-DYFSDAISIGSFHATSRGILVVASAGNEGN-EG---SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESL 372 (768)
Q Consensus 298 ~~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 372 (768)
..... ......+..++.+|.++|++||+||||+|. .. ..++..+++|+|||++.+
T Consensus 113 ~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~-------------------- 172 (247)
T cd07491 113 KKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED-------------------- 172 (247)
T ss_pred ccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC--------------------
Confidence 75110 113577888899999999999999999998 32 345677899999985421
Q ss_pred cccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 373 SLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 373 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEE
Q 004205 453 DVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAA 532 (768)
Q Consensus 453 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa 532 (768)
+.++.||++|+.. |++|||++|+++
T Consensus 173 -----------------------------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~ 197 (247)
T cd07491 173 -----------------------------------------------GGADAPVGDEDRV--------DYILPGENVEAR 197 (247)
T ss_pred -----------------------------------------------CCCccccCCCCcc--------eEEeCCCceecC
Confidence 4567899999988 999999999998
Q ss_pred ecCCCCCcceEEeccccchhHHHHHHHHHHHHh
Q 004205 533 WSPAVGKMQFNILSGTSMACPHVTGIATLIKAV 565 (768)
Q Consensus 533 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 565 (768)
.+. ...+.|..++|||||||||||++||+++.
T Consensus 198 ~~~-~~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 198 DRP-PLSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CcC-CCCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 752 12356999999999999999999999985
No 33
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=3.4e-40 Score=353.71 Aligned_cols=251 Identities=20% Similarity=0.184 Sum_probs=183.0
Q ss_pred cCCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccc
Q 004205 131 EESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDI 210 (768)
Q Consensus 131 ~~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~ 210 (768)
+++..+|+.+++| +||+|+|||||||++||+|.+.... ...+.+..+...
T Consensus 26 ~~~~~~w~~g~~G-~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~~---- 75 (297)
T cd04059 26 LNVTPAWEQGITG-KGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDPD---- 75 (297)
T ss_pred cccHHHHhCCCCC-cceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCCC----
Confidence 5677999999999 9999999999999999999743210 011122211100
Q ss_pred cccccCCCC--CCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCC
Q 004205 211 VETVSFRSP--RDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGV 288 (768)
Q Consensus 211 ~~~~~~~~~--~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~ 288 (768)
..+ .|..||||||||||+|+..+.. ...||||+|+|+.+|++... .....+..++.++.+ .+
T Consensus 76 ------~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~ 139 (297)
T cd04059 76 ------PTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YI 139 (297)
T ss_pred ------CCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-Cc
Confidence 112 2788999999999999864321 23899999999999999754 334445556655544 46
Q ss_pred cEEEeccCCCCCCC--CCchhHHHHHHHHhhc-----CCcEEEEeccCCCC-CC----CcccCCCceEEEcccCCCccce
Q 004205 289 HILSLSLGPEAPQG--DYFSDAISIGSFHATS-----RGILVVASAGNEGN-EG----SVTNLAPWMFTIAASSTDRDFT 356 (768)
Q Consensus 289 dVIN~SlG~~~~~~--~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~-~~----~~~~~~p~vitVgAs~~~~~~~ 356 (768)
+|||||||...... .........++.++.. +|++||+||||+|. .. ..+...+++|+|||++.
T Consensus 140 ~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~----- 214 (297)
T cd04059 140 DIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA----- 214 (297)
T ss_pred eEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC-----
Confidence 99999999775211 1122333444444442 79999999999997 22 22345678888887432
Q ss_pred eeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHH
Q 004205 357 SEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVV 436 (768)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~ 436 (768)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCC
Q 004205 437 KEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPE 516 (768)
Q Consensus 437 ~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 516 (768)
.+.++.||++|+..
T Consensus 215 --------------------------------------------------------------~g~~~~~s~~g~~~---- 228 (297)
T cd04059 215 --------------------------------------------------------------NGVRASYSEVGSSV---- 228 (297)
T ss_pred --------------------------------------------------------------CCCCcCCCCCCCcE----
Confidence 24567899999988
Q ss_pred cccCceeeCCce-------EEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 517 ILKPDVTAPGLN-------IIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 517 ~~KPDI~APG~~-------I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
+++|||.. |+++... .....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 229 ----~~~a~g~~~~~~~~~i~~~~~~-~~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 229 ----LASAPSGGSGNPEASIVTTDLG-GNCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred ----EEEecCCCCCCCCCceEeCCCC-CCCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 99999988 7776552 11356789999999999999999999999999999999999999985
No 34
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=8e-40 Score=350.39 Aligned_cols=149 Identities=30% Similarity=0.346 Sum_probs=106.6
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccc-ccccccccCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAE-EDIVETVSFRSPRDSSG 224 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~-~~~~~~~~~~~~~D~~g 224 (768)
.|+|||||||||++||+|.+.-. ...+.+....... .......+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS--------------------------SYSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc--------------------------ccccccccCCCcCCccccccCCCCcCCCCCC
Confidence 48999999999999999974210 0001110000000 00000111234567899
Q ss_pred CcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCC-CHHHHHHHHHHHHHcCCcEEEeccCCCCCCC-
Q 004205 225 HGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGC-YDVDLLAAFDDAIRDGVHILSLSLGPEAPQG- 302 (768)
Q Consensus 225 HGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~-~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~- 302 (768)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ...++++||+||++++++|||||||......
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~ 122 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGG 122 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCc
Confidence 99999999998642 259999999999999987664 7889999999999999999999999764211
Q ss_pred -----CCchhHHHHHHHHhhcCCcEEEEeccCCCC
Q 004205 303 -----DYFSDAISIGSFHATSRGILVVASAGNEGN 332 (768)
Q Consensus 303 -----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~ 332 (768)
......+..+++.+.++|++||+||||+|.
T Consensus 123 ~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~ 157 (294)
T cd07482 123 EYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGL 157 (294)
T ss_pred ccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCc
Confidence 112245677777888999999999999996
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.6e-39 Score=328.38 Aligned_cols=221 Identities=24% Similarity=0.303 Sum_probs=173.2
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGH 225 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 225 (768)
||+|||||||||++||+|.+... ..+.+..+.. ..+.....|..||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~~~-------~~~~~~~~d~~gH 46 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDLEI-------IVVSAEGGDKDGH 46 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------cccccccccc-------ccCCCCCCCCCCc
Confidence 79999999999999999974311 0011100000 0011345678899
Q ss_pred cchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCC
Q 004205 226 GSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDY 304 (768)
Q Consensus 226 GTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~ 304 (768)
||||||||++ .+|+++|+.+|+++..+ +..+++++||+|++++|++|||||||.... .
T Consensus 47 GT~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~---~ 105 (222)
T cd07492 47 GTACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD---R 105 (222)
T ss_pred HHHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC---C
Confidence 9999999975 35999999999998766 788899999999999999999999998751 2
Q ss_pred chhHHHHHHHHhhcCCcEEEEeccCCCCCCCcccCCCceEEEcccCCCccceeeEEeCCCceEecccccccccccchhcc
Q 004205 305 FSDAISIGSFHATSRGILVVASAGNEGNEGSVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASARII 384 (768)
Q Consensus 305 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~ 384 (768)
....+..+++++.++|+++|+||||++.....|+..+.+|+|++...+
T Consensus 106 ~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~Pa~~~~vi~V~~~~~~-------------------------------- 153 (222)
T cd07492 106 DFPLLKELLEYAYKAGGIIVAAAPNNNDIGTPPASFPNVIGVKSDTAD-------------------------------- 153 (222)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCceEEEEecCCC--------------------------------
Confidence 335677788888899999999999999833337788899999864311
Q ss_pred ccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceeeEEE
Q 004205 385 SASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIPSAV 464 (768)
Q Consensus 385 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~ 464 (768)
T Consensus 154 -------------------------------------------------------------------------------- 153 (222)
T cd07492 154 -------------------------------------------------------------------------------- 153 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEecCCCCCcceEE
Q 004205 465 VGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWSPAVGKMQFNI 544 (768)
Q Consensus 465 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~y~~ 544 (768)
... +.+++. +|+.|||.+|+++.+. +.|..
T Consensus 154 -----------------------------------~~~---~~~~~~--------~~~~apg~~i~~~~~~----~~~~~ 183 (222)
T cd07492 154 -----------------------------------DPK---SFWYIY--------VEFSADGVDIIAPAPH----GRYLT 183 (222)
T ss_pred -----------------------------------CCc---ccccCC--------ceEEeCCCCeEeecCC----CCEEE
Confidence 001 112343 4999999999999774 56999
Q ss_pred eccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 545 LSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 545 ~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 184 ~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 184 VSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred eccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999985
No 36
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=331.22 Aligned_cols=355 Identities=22% Similarity=0.306 Sum_probs=264.4
Q ss_pred CcEEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcccc-----cccceEEEecceeeEEEEEeCH-----HHHHHHhcCCC
Q 004205 36 AKVYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSMEQ-----AQASHVYSYKHGFRGFAAKLTD-----QQASQIAQMPG 105 (768)
Q Consensus 36 ~~~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~y~~~~~g~s~~~~~-----~~~~~L~~~p~ 105 (768)
+..|||.|+.... ...|...+++.+.+|... .....-..|-..|.-+-++=.. -++++|..+|.
T Consensus 49 e~EyIv~F~~y~~------Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~ 122 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP------AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD 122 (1033)
T ss_pred cceeEEEeccccc------chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence 5789999998752 245667777776333211 1112234455555555554332 35899999999
Q ss_pred eEEEEecceeccCCC------------C----------C--------cccccc----------cccCCCCcCCCCCCCCc
Q 004205 106 VVSVFPNMKRRLHTT------------H----------S--------WDFMGL----------MGEESMEIPGFSTKNQV 145 (768)
Q Consensus 106 V~~V~~~~~~~~~~~------------~----------s--------~~~~g~----------~~~~~~~~~~~~~~Gg~ 145 (768)
|+.|.|.+.+..-.. . + |.-++- +..+++-+|..|++| +
T Consensus 123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTG-a 201 (1033)
T KOG4266|consen 123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTG-A 201 (1033)
T ss_pred ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccC-C
Confidence 999999887643100 0 0 000000 013577899999999 9
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCCCCCC
Q 004205 146 NIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRDSSGH 225 (768)
Q Consensus 146 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 225 (768)
+|+|||.|||+.-+||.|+.- .....+.++ ..-.|.-||
T Consensus 202 ~VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE-------------~tLdD~lgH 240 (1033)
T KOG4266|consen 202 KVKVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE-------------DTLDDNLGH 240 (1033)
T ss_pred ceEEEEeecccccCCccccch----------------------------hhhcCCcCc-------------cccccCccc
Confidence 999999999999999999621 000111111 244578899
Q ss_pred cchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHHHcCCcEEEeccCCCCCCCCC
Q 004205 226 GSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAIRDGVHILSLSLGPEAPQGDY 304 (768)
Q Consensus 226 GTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~ 304 (768)
||.|||+|||... -.|.||+++|+++|||.+.. .+.+..+.|+.||+....||+|+|+|++. +
T Consensus 241 GTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD----f 304 (1033)
T KOG4266|consen 241 GTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD----F 304 (1033)
T ss_pred ceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc----c
Confidence 9999999998752 27889999999999998776 78899999999999999999999999885 7
Q ss_pred chhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcccCC--CceEEEcccCCCccceeeEEeCCCceEecccccccccccch
Q 004205 305 FSDAISIGSFHATSRGILVVASAGNEGN-EGSVTNLA--PWMFTIAASSTDRDFTSEIVLGDGANFTGESLSLCKMNASA 381 (768)
Q Consensus 305 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~~~~--p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 381 (768)
.+.|+-.-+.......|++|.|+||+|+ .++..+++ ..+|.||.
T Consensus 305 mD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG--------------------------------- 351 (1033)
T KOG4266|consen 305 MDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG--------------------------------- 351 (1033)
T ss_pred ccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc---------------------------------
Confidence 7778777777888999999999999999 77765543 34566652
Q ss_pred hccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCCccceee
Q 004205 382 RIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVIP 461 (768)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 461 (768)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCC----CCCcccCceeeCCceEEEEecCCC
Q 004205 462 SAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNAL----NPEILKPDVTAPGLNIIAAWSPAV 537 (768)
Q Consensus 462 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~APG~~I~Sa~~~~~ 537 (768)
.+..+.++.|||||-+.. ..||+||||++-|.+|......
T Consensus 352 ----------------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-- 395 (1033)
T KOG4266|consen 352 ----------------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-- 395 (1033)
T ss_pred ----------------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc--
Confidence 223478999999997653 3689999999999999876442
Q ss_pred CCcceEEeccccchhHHHHHHHHHHHH----hCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccccCc
Q 004205 538 GKMQFNILSGTSMACPHVTGIATLIKA----VHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGFLNP 613 (768)
Q Consensus 538 ~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~vn~ 613 (768)
.+...+||||.|+|.|||+++|+.+ +.--+.|+.+|++|+..|.++. ...-++||+|++|+
T Consensus 396 --~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLp-------------g~NMfEQGaGkldL 460 (1033)
T KOG4266|consen 396 --TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLP-------------GPNMFEQGAGKLDL 460 (1033)
T ss_pred --ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCC-------------CCchhhccCcchhH
Confidence 4578999999999999999999976 3344689999999999999762 12347999999999
Q ss_pred cccCC
Q 004205 614 RKVLS 618 (768)
Q Consensus 614 ~~Al~ 618 (768)
.++.+
T Consensus 461 L~syq 465 (1033)
T KOG4266|consen 461 LESYQ 465 (1033)
T ss_pred HHHHH
Confidence 88876
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=6.7e-38 Score=330.40 Aligned_cols=243 Identities=29% Similarity=0.411 Sum_probs=185.1
Q ss_pred CCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCC
Q 004205 142 KNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRD 221 (768)
Q Consensus 142 ~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D 221 (768)
+| +||+|+|||+||+++||+|.+..... ..+..... .......|
T Consensus 1 tG-~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~~--------~~~~~~~~ 44 (267)
T cd04848 1 TG-AGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVND--------AGYASNGD 44 (267)
T ss_pred CC-CceEEEEEeCCCCCCCccccCccccc---------------------------cccccccc--------ccCCCCCC
Confidence 46 99999999999999999997542110 00000000 00123457
Q ss_pred CCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC--CCHHHHHHHHHHHHHcCCcEEEeccCCCC
Q 004205 222 SSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG--CYDVDLLAAFDDAIRDGVHILSLSLGPEA 299 (768)
Q Consensus 222 ~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 299 (768)
..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||...
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~ 115 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNP 115 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCC
Confidence 789999999999998643 3358999999999999998764 56678899999999999999999999885
Q ss_pred CCCC----------CchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCc---------ccCCCceEEEcccCCCccceeeE
Q 004205 300 PQGD----------YFSDAISIGSFHATSRGILVVASAGNEGN-EGSV---------TNLAPWMFTIAASSTDRDFTSEI 359 (768)
Q Consensus 300 ~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~---------~~~~p~vitVgAs~~~~~~~~~~ 359 (768)
.... .....+...++.+.++|+++|+||||++. .... ++..+++|+||+.+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~------- 188 (267)
T cd04848 116 AIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN------- 188 (267)
T ss_pred cccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-------
Confidence 2111 14466777788889999999999999987 2221 3345778888875422
Q ss_pred EeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHc
Q 004205 360 VLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEA 439 (768)
Q Consensus 360 ~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~ 439 (768)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCcccc--ccCCCCCCCCCCc
Q 004205 440 GGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAA--FSSKGPNALNPEI 517 (768)
Q Consensus 440 Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~~~ 517 (768)
+.... ||++|+..
T Consensus 189 ------------------------------------------------------------~~~~~~~~s~~~~~~----- 203 (267)
T cd04848 189 ------------------------------------------------------------GTIASYSYSNRCGVA----- 203 (267)
T ss_pred ------------------------------------------------------------CCcccccccccchhh-----
Confidence 12223 48888654
Q ss_pred ccCceeeCCceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 518 LKPDVTAPGLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 518 ~KPDI~APG~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
-.++++|||.+|+++.+. ....|..++|||||||+|||++||++|++|+|+++|||++|++||+
T Consensus 204 ~~~~~~apG~~i~~~~~~--~~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 204 ANWCLAAPGENIYSTDPD--GGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred hhheeecCcCceeecccC--CCCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 234799999999999762 2356899999999999999999999999999999999999999985
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-33 Score=307.96 Aligned_cols=358 Identities=22% Similarity=0.242 Sum_probs=231.0
Q ss_pred CCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC---CCHHHHHHHHHHHHHcCCcEEEeccCCC
Q 004205 222 SSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG---CYDVDLLAAFDDAIRDGVHILSLSLGPE 298 (768)
Q Consensus 222 ~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 298 (768)
...|||||||||+|+..... ...||||+|+|+++++.+..- .+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 35699999999999986543 347999999999999987432 4456799999999999999999999988
Q ss_pred CCCCCCchhHHHHHHHHhhcCCcEEEEeccCCCC-CCCcc---cCCCceEEEcccCCCccceeeEEeCCCceEecccccc
Q 004205 299 APQGDYFSDAISIGSFHATSRGILVVASAGNEGN-EGSVT---NLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSL 374 (768)
Q Consensus 299 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~-~~~~~---~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (768)
. ..+.....++.+-+.+-++|+++|+||||+|+ -.+++ +....+|.|||.-......
T Consensus 381 a-~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~------------------ 441 (1304)
T KOG1114|consen 381 A-HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ------------------ 441 (1304)
T ss_pred C-CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH------------------
Confidence 6 22222334444444445899999999999999 44443 4556889999742111000
Q ss_pred cccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCC
Q 004205 375 CKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDV 454 (768)
Q Consensus 375 ~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~ 454 (768)
T Consensus 442 -------------------------------------------------------------------------------- 441 (1304)
T KOG1114|consen 442 -------------------------------------------------------------------------------- 441 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEec
Q 004205 455 AIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWS 534 (768)
Q Consensus 455 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~ 534 (768)
...+.. ..-...+..||||||+. ||.+--.|.|||+.|.|--.
T Consensus 442 -----------------a~y~~~------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~ 484 (1304)
T KOG1114|consen 442 -----------------AEYSVR------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQ 484 (1304)
T ss_pred -----------------hhhhhh------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCch
Confidence 000000 11234578899999998 89999999999999976532
Q ss_pred CCCCCcceEEeccccchhHHHHHHHHHHHH----hCCCCCHHHHHHHHHhhcccccCCCCCccCCCCCCCCCCCcccccc
Q 004205 535 PAVGKMQFNILSGTSMACPHVTGIATLIKA----VHPSWSPSAIKSAIMTTATALDKNHKPITVDPKGRRGNAFDYGSGF 610 (768)
Q Consensus 535 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~G~G~ 610 (768)
. .-..-..|.|||||+|+++|.+|||++ .+-.+||..||.+|++||++++. -.++.||.|+
T Consensus 485 ~--tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~-------------id~faqG~Gm 549 (1304)
T KOG1114|consen 485 Y--TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD-------------IDSFAQGQGM 549 (1304)
T ss_pred h--hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc-------------cchhccCcce
Confidence 1 112357899999999999999999976 46779999999999999997632 2468999999
Q ss_pred cCccccCCCCeeecCCCcchhhhh-hccCCC-ccceeEeecCCCcCCCCCCCCCCCCC---CeEEecCCCccEEEEEEEE
Q 004205 611 LNPRKVLSPGLIYDAQPIDYTVFL-CSIGYD-EKSLHLVTRDNSKCSQKLPAPYDLNY---PSITVPNLKGNFSVTRSVT 685 (768)
Q Consensus 611 vn~~~Al~~~l~~~~~~~~y~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~ln~---ps~~~~~~~~~~t~~~tv~ 685 (768)
+++.+|.+--.-.+.....-+.|+ ...|-+ ++.|++ +++..| ..+.+.+. |-|--.. .
T Consensus 550 lqVdkAyEyL~q~~~~f~~~l~f~~v~VgN~~srGIyL--Rep~~~----~~p~e~~i~VePiF~~~~-----------e 612 (1304)
T KOG1114|consen 550 LQVDKAYEYLAQSDFSFPNALGFINVNVGNSCSRGIYL--REPTQV----CSPSEHTIGVEPIFENGE-----------E 612 (1304)
T ss_pred eehhHHHHHHHHhhhcCCccceeEEEeeccccccceEe--cCCccc----CCccccceeccccccCcc-----------c
Confidence 999999862111111111112221 111111 122222 122211 01111211 1111000 0
Q ss_pred ecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCCCCceEEEEEEEEcC-----ceEEEEEEEEE
Q 004205 686 NVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKNG-----KLRVTSPLVVQ 758 (768)
Q Consensus 686 N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~i~~~~~-----~~~v~~P~~~~ 758 (768)
|. .+...|.+.......-.|.-.|..|-+ .++.+.|.|+++++.+..+.+++.|.--|- +...|||+.|.
T Consensus 613 ~~-keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 613 NE-KEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVI 687 (1304)
T ss_pred cc-cccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEE
Confidence 11 112223332221111124444777777 578899999999988888888888886652 46899999987
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-33 Score=288.11 Aligned_cols=195 Identities=22% Similarity=0.207 Sum_probs=142.1
Q ss_pred CCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHH--HHcCCcEEEeccC
Q 004205 219 PRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDA--IRDGVHILSLSLG 296 (768)
Q Consensus 219 ~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIN~SlG 296 (768)
..|.+||||||||||||.. |++|+++|+..++.. .....+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 4478999999999999863 467999999766532 2233466778888 5678999999999
Q ss_pred CCCCCC----CCchhHHHHHHHHhhcC-CcEEEEeccCCCC-C-----CCcccCCCceEEEcccCCCccceeeEEeCCCc
Q 004205 297 PEAPQG----DYFSDAISIGSFHATSR-GILVVASAGNEGN-E-----GSVTNLAPWMFTIAASSTDRDFTSEIVLGDGA 365 (768)
Q Consensus 297 ~~~~~~----~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~-~-----~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 365 (768)
...... -...+.+..+++.+.++ |+++|+||||+|. . ...+..++++|+|||++....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------- 163 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------- 163 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----------
Confidence 875211 01234567777777766 9999999999997 2 123567788999998542210
Q ss_pred eEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEE
Q 004205 366 NFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMI 445 (768)
Q Consensus 366 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i 445 (768)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeC
Q 004205 446 LVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAP 525 (768)
Q Consensus 446 ~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 525 (768)
....+.||++|.....++..||||+||
T Consensus 164 -----------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~AP 190 (247)
T cd07488 164 -----------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAP 190 (247)
T ss_pred -----------------------------------------------------cceecccccccCCCCCCCCceeEEEEe
Confidence 012345666543222367899999999
Q ss_pred CceEEEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHH------HHHHHHHhh
Q 004205 526 GLNIIAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPS------AIKSAIMTT 581 (768)
Q Consensus 526 G~~I~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~------~ik~~L~~T 581 (768)
|++|++ + . +.|..++|||||||||||++|||++++|++.+. ++|.+|++|
T Consensus 191 G~~i~s--~--~--~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 191 GSNYNL--P--D--GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eeeEEC--C--C--CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 999998 3 2 358899999999999999999999998887643 466666655
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=2.3e-31 Score=274.91 Aligned_cols=195 Identities=34% Similarity=0.510 Sum_probs=158.0
Q ss_pred CCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCC-CCHHHHHHHHHHHH-HcCCcEEEecc
Q 004205 218 SPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSG-CYDVDLLAAFDDAI-RDGVHILSLSL 295 (768)
Q Consensus 218 ~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIN~Sl 295 (768)
...+..+||||||++|++..... ...|+||+++|+.+|+....+ .....+++++++++ +.+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34567899999999999876432 127999999999999997665 66788999999999 89999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHhhcC-CcEEEEeccCCCC-CC---CcccCCCceEEEcccCCCccceeeEEeCCCceEecc
Q 004205 296 GPEAPQGDYFSDAISIGSFHATSR-GILVVASAGNEGN-EG---SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGE 370 (768)
Q Consensus 296 G~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~-~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~ 370 (768)
|..... ....+..++..+.++ |+++|+||||.+. .. ..++..+++|+||+++.+.
T Consensus 110 g~~~~~---~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------- 169 (241)
T cd00306 110 GGPGSP---PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------- 169 (241)
T ss_pred CCCCCC---CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------
Confidence 988511 345667777788777 9999999999998 43 5788899999999854321
Q ss_pred cccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCC
Q 004205 371 SLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEP 450 (768)
Q Consensus 371 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~ 450 (768)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCcc-ccccCCCCCCCCCCcccCceeeCCceE
Q 004205 451 GKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRV-AAFSSKGPNALNPEILKPDVTAPGLNI 529 (768)
Q Consensus 451 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSs~Gp~~~~~~~~KPDI~APG~~I 529 (768)
.. ..++++|+ |||+.|||.++
T Consensus 170 --------------------------------------------------~~~~~~~~~~~--------~~~~~apg~~~ 191 (241)
T cd00306 170 --------------------------------------------------TPASPSSNGGA--------GVDIAAPGGDI 191 (241)
T ss_pred --------------------------------------------------CccCCcCCCCC--------CceEEeCcCCc
Confidence 11 13445554 55999999999
Q ss_pred EEEecCCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 004205 530 IAAWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTT 581 (768)
Q Consensus 530 ~Sa~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 581 (768)
.+... .....+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 192 ~~~~~--~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 192 LSSPT--TGGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cCccc--CCCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 87522 233569999999999999999999999999999999999999875
No 41
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-26 Score=235.67 Aligned_cols=418 Identities=17% Similarity=0.192 Sum_probs=244.1
Q ss_pred hhHHHHHHHHhhccccCCCCcEEEEEeCCCCCCC-CchhhHhHHHHHHHHhcCcccccccceEEEec-ceeeEEEEEeCH
Q 004205 17 YIFYLLVGVFLAENNICFSAKVYVVYMGTTTGED-PLDVWRQHHQMLAVVHAGSMEQAQASHVYSYK-HGFRGFAAKLTD 94 (768)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~yiV~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~-~~~~g~s~~~~~ 94 (768)
.+++|++....+....+...+.|+|+|++....+ ..++..+| .+.. +.. -....-.|+|. ..+--..-+-+.
T Consensus 12 ~fl~lf~~~~gag~~~~vftnhflv~l~~g~g~~~ah~va~~h-gf~n----rg~-~~a~d~eyhf~h~~l~har~rrsl 85 (629)
T KOG3526|consen 12 VFLSLFCVMIGAGEAVDVFTNHFLVHLKEGGGLEDAHRVAKRH-GFIN----RGQ-VAASDNEYHFVHPALVHARTRRSL 85 (629)
T ss_pred HHHHHHHHHhccccCcceeeeeEEEEEeccCChHHHHHHHHHh-Cccc----ccc-ccccCceeeeeccccchhhhhccc
Confidence 3333333333444555677899999999985332 11111111 1110 000 01112234433 222111222233
Q ss_pred HHHHHHhcCCCeEEEEecceeccCC------------------CCCcccc------ccc--ccCCCCcCCCCCCCCcceE
Q 004205 95 QQASQIAQMPGVVSVFPNMKRRLHT------------------THSWDFM------GLM--GEESMEIPGFSTKNQVNII 148 (768)
Q Consensus 95 ~~~~~L~~~p~V~~V~~~~~~~~~~------------------~~s~~~~------g~~--~~~~~~~~~~~~~Gg~GV~ 148 (768)
..-.+|.++|.|+-+.+..-+.... +..|-+. |-. ..++.++|.++++| ++|+
T Consensus 86 ~h~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~awa~g~tg-knvt 164 (629)
T KOG3526|consen 86 GHHAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTG-KNVT 164 (629)
T ss_pred chhhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHHHhhcccC-CCce
Confidence 4456788888887766554443210 0111111 111 13466899999999 9999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccccccccccCCCCCC--CCCCc
Q 004205 149 VGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIVETVSFRSPRD--SSGHG 226 (768)
Q Consensus 149 VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~D--~~gHG 226 (768)
++|+|.||||-|||++-. | .--..++|.. ++|.+++...| .+.||
T Consensus 165 taimddgvdymhpdlk~n------------------y-------naeasydfss--------ndpfpyprytddwfnshg 211 (629)
T KOG3526|consen 165 TAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSS--------NDPFPYPRYTDDWFNSHG 211 (629)
T ss_pred EEeecCCchhcCcchhcc------------------c-------Cceeeccccc--------CCCCCCCcccchhhhccC
Confidence 999999999999999621 1 1112223322 22444444444 68999
Q ss_pred chhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH-cCCcEEEeccCCCCCCC--C
Q 004205 227 SHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR-DGVHILSLSLGPEAPQG--D 303 (768)
Q Consensus 227 THVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~~--~ 303 (768)
|.|||-+++...+ +.+| .|||.+.++..+|+++. .+..|+++|-..-.+ ...+|.+-|||....+- +
T Consensus 212 trcagev~aardn--gicg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgktvd 281 (629)
T KOG3526|consen 212 TRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVD 281 (629)
T ss_pred ccccceeeeeccC--Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCcccC
Confidence 9999998876654 3466 79999999999999964 566777776433322 24789999999876321 1
Q ss_pred CchhHHHHHHHHhh-----cCCcEEEEeccCCCC--CC--CcccCCCceEEEcccCCCccceeeEEeCCCceEecccccc
Q 004205 304 YFSDAISIGSFHAT-----SRGILVVASAGNEGN--EG--SVTNLAPWMFTIAASSTDRDFTSEIVLGDGANFTGESLSL 374 (768)
Q Consensus 304 ~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~--~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (768)
...++.-+|+.+-+ ..|-+.|.|.|..|. .. .-.+.+-|.|++-+.-.|.
T Consensus 282 gprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg--------------------- 340 (629)
T KOG3526|consen 282 GPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDG--------------------- 340 (629)
T ss_pred CchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCC---------------------
Confidence 12233334444444 356799999999887 22 2224556777775432211
Q ss_pred cccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCC
Q 004205 375 CKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDV 454 (768)
Q Consensus 375 ~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~ 454 (768)
....+++.|..
T Consensus 341 -------------------~nahydescss-------------------------------------------------- 351 (629)
T KOG3526|consen 341 -------------------ENAHYDESCSS-------------------------------------------------- 351 (629)
T ss_pred -------------------ccccccchhhH--------------------------------------------------
Confidence 11122333321
Q ss_pred CccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCCcccCceeeCCceEEEEec
Q 004205 455 AIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPEILKPDVTAPGLNIIAAWS 534 (768)
Q Consensus 455 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~Sa~~ 534 (768)
..-+.||+-|..+ +- | +-.+-.
T Consensus 352 ---------------------------------------------tlastfsng~rnp--------et---g--vattdl 373 (629)
T KOG3526|consen 352 ---------------------------------------------TLASTFSNGGRNP--------ET---G--VATTDL 373 (629)
T ss_pred ---------------------------------------------HHHHHhhcCCcCC--------Cc---c--eeeecc
Confidence 2235677766544 11 2 212211
Q ss_pred CCCCCcceEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcccccCCCCC--c-cCCCCCCCCCCCccccccc
Q 004205 535 PAVGKMQFNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSAIMTTATALDKNHKP--I-TVDPKGRRGNAFDYGSGFL 611 (768)
Q Consensus 535 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~p--~-~~~~~~~~~~~~~~G~G~v 611 (768)
.+......||||.|+|-.||+.||.++++|.|+..+++.+-.-|.+........ . ..........+..||+|.+
T Consensus 374 ---yg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvl 450 (629)
T KOG3526|consen 374 ---YGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVL 450 (629)
T ss_pred ---ccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccc
Confidence 124567789999999999999999999999999999998877777653211100 0 0001234556778999999
Q ss_pred CccccCCCCeeecCCCcchhhhhhccC
Q 004205 612 NPRKVLSPGLIYDAQPIDYTVFLCSIG 638 (768)
Q Consensus 612 n~~~Al~~~l~~~~~~~~y~~~~~~~g 638 (768)
|+.+.+.-...|.+.++.| -|.-|
T Consensus 451 dagamv~lak~wktvppry---hc~ag 474 (629)
T KOG3526|consen 451 DAGAMVMLAKAWKTVPPRY---HCTAG 474 (629)
T ss_pred cHHHHHHHHHHhccCCCce---eeccc
Confidence 9988887666677777665 46655
No 42
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-23 Score=240.48 Aligned_cols=274 Identities=28% Similarity=0.412 Sum_probs=196.7
Q ss_pred cCCCCcCCC--CCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCccccc
Q 004205 131 EESMEIPGF--STKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEE 208 (768)
Q Consensus 131 ~~~~~~~~~--~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~ 208 (768)
......|.. +.+| +||+|+|||+||+..||+|.+... .+ ..|.++..
T Consensus 127 ~~~~~~~~~~~~~~g-~gv~~~vid~gv~~~~~~~~~~~~--------------------------~~-~~~~~~~~--- 175 (508)
T COG1404 127 ISVGALVANGAGLTG-KGVTVAVIDTGVDASHPDLAGSAV--------------------------AG-GDFVDGDP--- 175 (508)
T ss_pred cccccccccccCCCC-CCeEEEEeccCCCCCChhhhcccc--------------------------cc-cccccCCC---
Confidence 345577887 8889 999999999999999999975321 00 12222100
Q ss_pred cccccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCC-C-CCHHHHHHHHHHHHHc
Q 004205 209 DIVETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDS-G-CYDVDLLAAFDDAIRD 286 (768)
Q Consensus 209 ~~~~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~-g-~~~~~i~~ai~~a~~~ 286 (768)
.....|..+|||||+|++++....+ .....|+||+++++.+|++... + ....+++++|+++++.
T Consensus 176 -------~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 241 (508)
T COG1404 176 -------EPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANL 241 (508)
T ss_pred -------CCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhc
Confidence 0024688999999999999843111 1234899999999999999865 4 6677889999999999
Q ss_pred C--CcEEEeccCCCCCCCCCchhHHHHHHHHhhcCC-cEEEEeccCCCC-CC----CcccCC--CceEEEcccCCCccce
Q 004205 287 G--VHILSLSLGPEAPQGDYFSDAISIGSFHATSRG-ILVVASAGNEGN-EG----SVTNLA--PWMFTIAASSTDRDFT 356 (768)
Q Consensus 287 g--~dVIN~SlG~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~-~~----~~~~~~--p~vitVgAs~~~~~~~ 356 (768)
+ +++||||+|.. ........+..++..+...| +++|+|+||.+. .. ..+... +.+++|+|..
T Consensus 242 ~~~~~~in~s~g~~--~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~------ 313 (508)
T COG1404 242 GGPADVINLSLGGS--LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD------ 313 (508)
T ss_pred CCCCcEEEecCCCC--ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC------
Confidence 9 99999999985 11133456667777877777 999999999987 21 122222 2455555421
Q ss_pred eeEEeCCCceEecccccccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHH
Q 004205 357 SEIVLGDGANFTGESLSLCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVV 436 (768)
Q Consensus 357 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~ 436 (768)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEEcCCCCCCCccceeeEEEechhhHHHHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCCCCCC
Q 004205 437 KEAGGVGMILVDEPGKDVAIPFVIPSAVVGKKTGNKILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNALNPE 516 (768)
Q Consensus 437 ~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 516 (768)
..+.++.||++|+..
T Consensus 314 -------------------------------------------------------------~~~~~~~~s~~g~~~---- 328 (508)
T COG1404 314 -------------------------------------------------------------LSDTVASFSNDGSPT---- 328 (508)
T ss_pred -------------------------------------------------------------CCCccccccccCCCC----
Confidence 125678899999741
Q ss_pred cccCceeeCCceEEE-----EecCCCCCcceEEeccccchhHHHHHHHHHHHHhCC-CCCHHHHHHHHHhhcccccCCCC
Q 004205 517 ILKPDVTAPGLNIIA-----AWSPAVGKMQFNILSGTSMACPHVTGIATLIKAVHP-SWSPSAIKSAIMTTATALDKNHK 590 (768)
Q Consensus 517 ~~KPDI~APG~~I~S-----a~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~lsp~~ik~~L~~TA~~~~~~g~ 590 (768)
..+++|||.+|.+ +++. ....|..++||||++|||+|++||+++.+| .+++.+++..+..++...
T Consensus 329 --~~~~~apg~~i~~~~~~~~~~~--~~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~----- 399 (508)
T COG1404 329 --GVDIAAPGVNILSLSAVNTLPG--DGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLT----- 399 (508)
T ss_pred --CcceeCCCccccccccceeeeC--CccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccc-----
Confidence 1299999999998 5543 112499999999999999999999999999 899999999988888730
Q ss_pred CccCCCCCCCCCCCcccccccCccccCC
Q 004205 591 PITVDPKGRRGNAFDYGSGFLNPRKVLS 618 (768)
Q Consensus 591 p~~~~~~~~~~~~~~~G~G~vn~~~Al~ 618 (768)
........++.|..+...+..
T Consensus 400 -------~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 400 -------PLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred -------cCCccccccccCccccccccc
Confidence 112233456667666655544
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.73 E-value=3.3e-17 Score=179.69 Aligned_cols=101 Identities=23% Similarity=0.255 Sum_probs=80.9
Q ss_pred cceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHc---CCcEEEeccCCCCCC-CCCchhHHHHHHHHhhcCCcEEEE
Q 004205 250 GARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRD---GVHILSLSLGPEAPQ-GDYFSDAISIGSFHATSRGILVVA 325 (768)
Q Consensus 250 ~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~ 325 (768)
.+.||||+|+|+.|++.++. ...++.++.+++.+ +++|||||||..... ...+...++.++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 45899999999999997542 45678888888887 999999999987511 011336778888899999999999
Q ss_pred eccCCCC-CC-----------CcccCCCceEEEcccCCCc
Q 004205 326 SAGNEGN-EG-----------SVTNLAPWMFTIAASSTDR 353 (768)
Q Consensus 326 AAGN~g~-~~-----------~~~~~~p~vitVgAs~~~~ 353 (768)
||||+|. .. ..|+.+|++++||+++...
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999998 32 2478899999999987654
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.16 E-value=1.6e-10 Score=109.84 Aligned_cols=109 Identities=19% Similarity=0.303 Sum_probs=86.1
Q ss_pred cccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCCC----ccceeeEEEechhhHH
Q 004205 396 PYQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDVA----IPFVIPSAVVGKKTGN 471 (768)
Q Consensus 396 ~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~----~~~~~p~~~i~~~~g~ 471 (768)
..+.+.|...++...+++|||+||+ +|.|.+.+|..+++++||.|+|++|+...... ....+|++.|++.+|+
T Consensus 30 lv~~g~g~~~d~~~~dv~GkIvL~~---rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~ 106 (143)
T cd02133 30 LVDAGLGTPEDFEGKDVKGKIALIQ---RGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGE 106 (143)
T ss_pred EEEccCCchhccCCCCccceEEEEE---CCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHH
Confidence 3444566666777788999999998 57899999999999999999999998865421 1247899999999999
Q ss_pred HHHHHHhccCccEEEEecCeeecCCCCCCccccccCCCCCC
Q 004205 472 KILSYISHTSKAISKIFPAKTVLGSEPAPRVAAFSSKGPNA 512 (768)
Q Consensus 472 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 512 (768)
.|++++.+ .++|.+..+.. ....+.++.||||||..
T Consensus 107 ~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 107 ALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred HHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 99999987 44555444444 34567799999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.09 E-value=7.3e-10 Score=102.94 Aligned_cols=115 Identities=34% Similarity=0.592 Sum_probs=90.9
Q ss_pred EEeCCCceEecccc---c--ccccccchhccccccccccccCcccCCccCcCCCCCCCCCCeEEEEeecCCCch-hHHHH
Q 004205 359 IVLGDGANFTGESL---S--LCKMNASARIISASEAYAGYFTPYQSSYCLESSLNSTKARGKVLVCRHAESSTE-SKLRK 432 (768)
Q Consensus 359 ~~~~~~~~~~g~~~---~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~-~~~~k 432 (768)
+.++|++.+.|+++ . .+|+++... .........|.+...+..+++|||+||+ ++.| .+.+|
T Consensus 2 i~LGng~~i~G~sl~~~~~~~~~~~~~~~----------~~~~~~~~~C~~~~~~~~~v~GkIVlc~---~~~~~~~~~k 68 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSA----------NSGDVDASLCLPGSLDPSKVKGKIVLCD---RGGNTSRVAK 68 (126)
T ss_pred EEeCCCCEEEEEEccCCCCCccceEeccC----------cCCCCccccCCCCCCChhhccccEEEEe---CCCCccHHHH
Confidence 67899999999998 2 345544211 0233455789998888899999999998 5668 89999
Q ss_pred HHHHHHcCceEEEEEcCCCCCC---CccceeeEEEechhhHHHHHHHHhccCccEEE
Q 004205 433 SMVVKEAGGVGMILVDEPGKDV---AIPFVIPSAVVGKKTGNKILSYISHTSKAISK 486 (768)
Q Consensus 433 ~~~~~~~Ga~g~i~~n~~~~~~---~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 486 (768)
..+++++||.|+|++++..... .....+|++.|..++|+.|++|++++.+++++
T Consensus 69 ~~~~~~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 69 GDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HHHHHHcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999999999998876552 22367999999999999999999987766554
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.85 E-value=8.7e-09 Score=87.90 Aligned_cols=78 Identities=29% Similarity=0.504 Sum_probs=56.7
Q ss_pred EEEEEeCCCCCCCCchhhHhHHHHHHHHhcCcc----cccccceEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEEecc
Q 004205 38 VYVVYMGTTTGEDPLDVWRQHHQMLAVVHAGSM----EQAQASHVYSYKHGFRGFAAKLTDQQASQIAQMPGVVSVFPNM 113 (768)
Q Consensus 38 ~yiV~l~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~ 113 (768)
+|||+|++.... ....+.|.+++.+++ .+. .....++.+.|...||||+++++++++++|+++|+|++|+||+
T Consensus 1 ~YIV~~k~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~ 77 (82)
T PF05922_consen 1 RYIVVFKDDASA--ASSFSSHKSWQASIL-KSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQ 77 (82)
T ss_dssp EEEEEE-TTSTH--HCHHHHHHHHHH-----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEEC
T ss_pred CEEEEECCCCCc--chhHHHHHHHHHHHH-hhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCc
Confidence 699999998532 113556677777554 211 3457899999999999999999999999999999999999999
Q ss_pred eeccC
Q 004205 114 KRRLH 118 (768)
Q Consensus 114 ~~~~~ 118 (768)
.++++
T Consensus 78 ~v~l~ 82 (82)
T PF05922_consen 78 VVSLH 82 (82)
T ss_dssp EEEE-
T ss_pred eEecC
Confidence 88763
No 47
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.83 E-value=4.6e-08 Score=88.80 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=62.1
Q ss_pred EEecCCCccEEEEEEEEecCCCceeEEEEEeC--------CCce-----------EEEEecCEEEEcCCCeEEEEEEEEE
Q 004205 669 ITVPNLKGNFSVTRSVTNVGKPRSIYKAVVSS--------PVGV-----------TVTVAPERLIFNSYGQKINFTVHFK 729 (768)
Q Consensus 669 ~~~~~~~~~~t~~~tv~N~~~~~~ty~~~~~~--------~~g~-----------~v~~~p~~~~~~~~~~~~~~~vt~~ 729 (768)
|+|+++....+++++|+|.|++..+|+++... ..|. .+...|..+++ ++|++++|+|+++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 45677777789999999999999999998761 1111 56677888889 7999999999999
Q ss_pred ecC----CCCceEEEEEEEEcC-ce-EEEEEEE
Q 004205 730 LTS----PPKGYGFGYLSWKNG-KL-RVTSPLV 756 (768)
Q Consensus 730 ~~~----~~~~~~~G~i~~~~~-~~-~v~~P~~ 756 (768)
++. ..+.+++|||.|++. ++ .+++||+
T Consensus 80 ~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 80 PPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 853 447899999999975 44 8999996
No 48
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.69 E-value=1.1e-07 Score=87.61 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=71.0
Q ss_pred CCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC-----C-C--ccceeeEEEechhhH
Q 004205 399 SSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD-----V-A--IPFVIPSAVVGKKTG 470 (768)
Q Consensus 399 ~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-----~-~--~~~~~p~~~i~~~~g 470 (768)
...|.+..++..+++|||+||+ ||.|.|.+|..+++++||.++|++|+.... . . ....+|+++|++.+|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~---rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G 105 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVD---RGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAG 105 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEE---CCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHH
Confidence 4679988888789999999999 688999999999999999999999987742 1 1 234699999999999
Q ss_pred HHHHHHHhccCccEE
Q 004205 471 NKILSYISHTSKAIS 485 (768)
Q Consensus 471 ~~l~~~~~~~~~~~~ 485 (768)
+.|++++.++.+.++
T Consensus 106 ~~l~~~l~~g~~v~~ 120 (122)
T cd04816 106 AALRRRLGAGETLEL 120 (122)
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999988765444
No 49
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.64 E-value=1.9e-07 Score=87.49 Aligned_cols=86 Identities=10% Similarity=0.122 Sum_probs=72.0
Q ss_pred cCCccCcCCC--CCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCC-CC----CC--ccceeeEEEechh
Q 004205 398 QSSYCLESSL--NSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPG-KD----VA--IPFVIPSAVVGKK 468 (768)
Q Consensus 398 ~~~~c~~~~~--~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~-~~----~~--~~~~~p~~~i~~~ 468 (768)
....|.+... +..++.|+|+|++ ||+|.|.+|..+++++||.++|+||+.. .. +. ....+|+++|+..
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~---RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~ 119 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQ---RGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNP 119 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEE---CCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHH
Confidence 3567998776 5678999999999 6899999999999999999999999886 21 12 2346899999999
Q ss_pred hHHHHHHHHhccCccEEE
Q 004205 469 TGNKILSYISHTSKAISK 486 (768)
Q Consensus 469 ~g~~l~~~~~~~~~~~~~ 486 (768)
+|+.|+.++.++.+.+++
T Consensus 120 ~G~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 120 KGMEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHHHcCCcEEEe
Confidence 999999999888766554
No 50
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=9.5e-07 Score=98.17 Aligned_cols=158 Identities=18% Similarity=0.112 Sum_probs=100.2
Q ss_pred CCCCcCCCCCCCCcceEEEEEeCCCCCCCCCCCCCCCCCCCCccccccccCCCCccccCCceeEEEEeccCCcccccccc
Q 004205 132 ESMEIPGFSTKNQVNIIVGFIDTGIWPESPSFSDIGMPPAPAKWKGQCESGEAFNASSCNRKVIGARYYMSGYEAEEDIV 211 (768)
Q Consensus 132 ~~~~~~~~~~~Gg~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~ 211 (768)
+....|..+++| .++.|+|.|.|++..||+.... ....+..++....+.
T Consensus 21 ~v~~~~~~~~~g-~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~~~----- 69 (431)
T KOG3525|consen 21 NVQNAWCKGYTG-TRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHDND----- 69 (431)
T ss_pred eeeeccccCCCC-CceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCCCC-----
Confidence 466899999999 9999999999999999998632 122333333322111
Q ss_pred ccccCCCCCCCCCCcchhhhcccccccccccccccCCCcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHH-cCCcE
Q 004205 212 ETVSFRSPRDSSGHGSHTASTAAGRYVANMNYRGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIR-DGVHI 290 (768)
Q Consensus 212 ~~~~~~~~~D~~gHGTHVAGi~ag~~~~~~~~~G~~~g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dV 290 (768)
+.+-.+....+.|||-||+-.+...++. ..+ .|+++++++..++++.. ...+...+...... .-+++
T Consensus 70 -p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--~C~------vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di 137 (431)
T KOG3525|consen 70 -PEPRCDGTNENKHGTRCAGCVAARANNL--TCG------VGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDI 137 (431)
T ss_pred -cccccCCCCccccCCCCCcccccccCCC--cCC------CCcccCccccceeeeee---ecccceecccccCCCCCcee
Confidence 2221223346889999999999876322 122 79999999999999852 11122233222222 23789
Q ss_pred EEeccCCCCCCC--CCchhHHHHHHHHh-----hcCCcEEEEeccCCCC
Q 004205 291 LSLSLGPEAPQG--DYFSDAISIGSFHA-----TSRGILVVASAGNEGN 332 (768)
Q Consensus 291 IN~SlG~~~~~~--~~~~~~~~~a~~~a-----~~~Gi~vV~AAGN~g~ 332 (768)
-+.|||....+. +........+...+ ..+|-+.++|.||.|.
T Consensus 138 ~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~ 186 (431)
T KOG3525|consen 138 YSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGT 186 (431)
T ss_pred ecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccc
Confidence 999999775221 11112233333333 3678899999999886
No 51
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.60 E-value=2.2e-07 Score=84.26 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=68.0
Q ss_pred cCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC-----C--CccceeeEEEechhhH
Q 004205 398 QSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD-----V--AIPFVIPSAVVGKKTG 470 (768)
Q Consensus 398 ~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-----~--~~~~~~p~~~i~~~~g 470 (768)
....|.+.++...+++|||+|++ ||+|+|.+|..+++++||.++|++|+.... . .....+|+++|++++|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~---RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG 105 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVM---RGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDM 105 (120)
T ss_pred CcCCCCccccCccccCCeEEEEE---CCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHH
Confidence 34679998888888999999999 689999999999999999999999988742 1 1345689999999999
Q ss_pred HHHHHHHhc
Q 004205 471 NKILSYISH 479 (768)
Q Consensus 471 ~~l~~~~~~ 479 (768)
+.|++.+.+
T Consensus 106 ~~i~~~l~~ 114 (120)
T cd02129 106 LDIQQTFGD 114 (120)
T ss_pred HHHHHHhcc
Confidence 999998764
No 52
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.60 E-value=3.6e-07 Score=83.34 Aligned_cols=85 Identities=22% Similarity=0.260 Sum_probs=70.3
Q ss_pred CCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC----C-------CccceeeEEEech
Q 004205 399 SSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD----V-------AIPFVIPSAVVGK 467 (768)
Q Consensus 399 ~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~----~-------~~~~~~p~~~i~~ 467 (768)
...|.+.. +..+++|||+|++ ||+|.|.+|..+++++||.++|+||+.... + .....+|+++|++
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~---RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~ 96 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIE---RGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLG 96 (118)
T ss_pred cccCCCCC-CccccCCeEEEEE---CCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecH
Confidence 46798644 3567999999999 689999999999999999999999976542 1 1235799999999
Q ss_pred hhHHHHHHHHhccCccEEEE
Q 004205 468 KTGNKILSYISHTSKAISKI 487 (768)
Q Consensus 468 ~~g~~l~~~~~~~~~~~~~i 487 (768)
.+|+.|++.+..+..+++.|
T Consensus 97 ~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 97 KNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHHcCCceEEee
Confidence 99999999999888776654
No 53
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.59 E-value=8.8e-08 Score=85.12 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=64.0
Q ss_pred ccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC-------CCccceeeEEEechhh
Q 004205 397 YQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD-------VAIPFVIPSAVVGKKT 469 (768)
Q Consensus 397 ~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-------~~~~~~~p~~~i~~~~ 469 (768)
.....|.+......+++|||+||+ ||.|+|.+|+.+++++||.|+|++|..... ......+|+++|+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~gkIvlv~---rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~ 93 (101)
T PF02225_consen 17 IDEGDCCPSDYNGSDVKGKIVLVE---RGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYED 93 (101)
T ss_dssp EECCHHHHHHTSTSTCTTSEEEEE---STSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHH
T ss_pred CCcccccccccCCccccceEEEEe---cCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHH
Confidence 345667888888999999999998 799999999999999999999999922221 2345789999999999
Q ss_pred HHHHHHHH
Q 004205 470 GNKILSYI 477 (768)
Q Consensus 470 g~~l~~~~ 477 (768)
|+.|++|+
T Consensus 94 g~~L~~~i 101 (101)
T PF02225_consen 94 GEALLAYI 101 (101)
T ss_dssp HHHHHHHH
T ss_pred HhhhhccC
Confidence 99999985
No 54
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.50 E-value=6.8e-07 Score=82.47 Aligned_cols=84 Identities=11% Similarity=0.182 Sum_probs=68.6
Q ss_pred CCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCC-CC------CCccceeeEEEechhhHH
Q 004205 399 SSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPG-KD------VAIPFVIPSAVVGKKTGN 471 (768)
Q Consensus 399 ~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~-~~------~~~~~~~p~~~i~~~~g~ 471 (768)
...|.+..+ +.+++|||+|++ ||.|.|.+|..+++++||.++|+||+.. .. ......+|++.|+.++|+
T Consensus 31 ~~gC~~~~~-~~~~~gkIvlv~---rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~ 106 (122)
T cd02130 31 NLGCDAADY-PASVAGNIALIE---RGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGK 106 (122)
T ss_pred CCCCCcccC-CcCCCCEEEEEE---CCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHH
Confidence 446887655 357999999999 6889999999999999999999998873 32 112457999999999999
Q ss_pred HHHHHHhccCccEEE
Q 004205 472 KILSYISHTSKAISK 486 (768)
Q Consensus 472 ~l~~~~~~~~~~~~~ 486 (768)
.|+..+.++.+.+++
T Consensus 107 ~L~~~l~~g~~v~~~ 121 (122)
T cd02130 107 ALVAALANGGEVSAN 121 (122)
T ss_pred HHHHHHhcCCcEEEe
Confidence 999999887765543
No 55
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.49 E-value=7.7e-07 Score=81.60 Aligned_cols=85 Identities=13% Similarity=0.241 Sum_probs=69.4
Q ss_pred ccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC--C-----CccceeeEEEechhh
Q 004205 397 YQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD--V-----AIPFVIPSAVVGKKT 469 (768)
Q Consensus 397 ~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~--~-----~~~~~~p~~~i~~~~ 469 (768)
.....|.+.... .+++|||+||+ |+.|.+.+|..+++++||.|+|++|+.... . .....+|++.|++++
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~---rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~ 100 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALID---RGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQAD 100 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEE---CCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHH
Confidence 345679887763 46999999998 577999999999999999999999887753 1 123579999999999
Q ss_pred HHHHHHHHhccCccEE
Q 004205 470 GNKILSYISHTSKAIS 485 (768)
Q Consensus 470 g~~l~~~~~~~~~~~~ 485 (768)
|+.|++|+..+...++
T Consensus 101 g~~l~~~l~~g~~v~v 116 (118)
T cd04818 101 GDALKAALAAGGTVTV 116 (118)
T ss_pred HHHHHHHHhcCCcEEE
Confidence 9999999987765444
No 56
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.47 E-value=8.1e-07 Score=82.25 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=67.2
Q ss_pred CCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC------------CC---ccceeeEE
Q 004205 399 SSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD------------VA---IPFVIPSA 463 (768)
Q Consensus 399 ~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~------------~~---~~~~~p~~ 463 (768)
...|.+... +.+++|||+|++ ||+|+|.+|..+++++||.++|++|+.... .. ....+|++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~---RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v 102 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIME---RGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVV 102 (126)
T ss_pred hhcccCCCC-ccccCceEEEEE---CCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEE
Confidence 467987554 557899999999 689999999999999999999999866541 01 23579999
Q ss_pred EechhhHHHHHHHHhccCccEE
Q 004205 464 VVGKKTGNKILSYISHTSKAIS 485 (768)
Q Consensus 464 ~i~~~~g~~l~~~~~~~~~~~~ 485 (768)
+|+..+|+.|+..+..+...++
T Consensus 103 ~I~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 103 FLFSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EEEHHHHHHHHHHHHhCCceEE
Confidence 9999999999999987655443
No 57
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.3e-06 Score=104.19 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=60.1
Q ss_pred CcceeccCCCcEeeeeeecCCCCCHHHHHHHHHHHHHcC-CcEEEeccCCCC-CCCCC--chhHHHHHHHHhhcCCcEEE
Q 004205 249 GGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDG-VHILSLSLGPEA-PQGDY--FSDAISIGSFHATSRGILVV 324 (768)
Q Consensus 249 g~~~GVAP~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g-~dVIN~SlG~~~-~~~~~--~~~~~~~a~~~a~~~Gi~vV 324 (768)
+..+-+||+|+|..|-.- .........|+..-...= --+|-.||+... ..+.+ .-+.+..-...|..+||.++
T Consensus 286 E~s~A~AP~A~I~lvvap---~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 286 EWSHAMAPKANIDLVVAP---NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hhhhccCccCceEEEEcC---CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 344679999999988772 122222333333222211 133445666533 12222 33556666678889999999
Q ss_pred EeccCCCC-CC--------CcccCCCceEEEcc
Q 004205 325 ASAGNEGN-EG--------SVTNLAPWMFTIAA 348 (768)
Q Consensus 325 ~AAGN~g~-~~--------~~~~~~p~vitVgA 348 (768)
+|+|.+|. .. ..|+.+|++.+||.
T Consensus 363 AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999987 32 34678999999996
No 58
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.43 E-value=1.1e-06 Score=82.13 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=60.6
Q ss_pred CCCCCCCCCeEEEEeecCCCchh-----HHHHHHHHHHcCceEEEEEcCC--CCC----CCc---cceeeEEEechhhHH
Q 004205 406 SLNSTKARGKVLVCRHAESSTES-----KLRKSMVVKEAGGVGMILVDEP--GKD----VAI---PFVIPSAVVGKKTGN 471 (768)
Q Consensus 406 ~~~~~~~~gkivl~~~~~~g~~~-----~~~k~~~~~~~Ga~g~i~~n~~--~~~----~~~---~~~~p~~~i~~~~g~ 471 (768)
++...+++|||+|++ ||.|. |.+|.++++++||.++|+||+. .+. +.+ ..++|+++|++++|+
T Consensus 49 d~~~~d~~GkIaLI~---RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~ 125 (139)
T cd04817 49 SYICGGMAGKICLIE---RGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQ 125 (139)
T ss_pred cccCCCcCccEEEEE---CCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHH
Confidence 445668999999999 68899 9999999999999999999998 442 121 458999999999999
Q ss_pred HHHHHHhcc
Q 004205 472 KILSYISHT 480 (768)
Q Consensus 472 ~l~~~~~~~ 480 (768)
.|+..+...
T Consensus 126 ~L~~~l~~~ 134 (139)
T cd04817 126 ALLAALGQS 134 (139)
T ss_pred HHHHHhcCC
Confidence 999988543
No 59
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.42 E-value=1.2e-06 Score=82.56 Aligned_cols=81 Identities=12% Similarity=0.309 Sum_probs=67.0
Q ss_pred CCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC--CC-------ccceeeEEEechhh
Q 004205 399 SSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD--VA-------IPFVIPSAVVGKKT 469 (768)
Q Consensus 399 ~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~--~~-------~~~~~p~~~i~~~~ 469 (768)
...|.+.. .+++|||+|++ ||+|.|.+|..+++++||.++|+||+.... +. ....+|+++|++.+
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~---RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~ 121 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVE---RGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSA 121 (139)
T ss_pred ccccCCCC---cccCCeEEEEE---CCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHH
Confidence 46798754 37899999999 689999999999999999999999877543 10 13579999999999
Q ss_pred HHHHHHHHhccCccEE
Q 004205 470 GNKILSYISHTSKAIS 485 (768)
Q Consensus 470 g~~l~~~~~~~~~~~~ 485 (768)
|+.|++++.++...++
T Consensus 122 G~~L~~~l~~g~~Vtv 137 (139)
T cd02132 122 GDALNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 9999999988765443
No 60
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.41 E-value=1.3e-06 Score=80.98 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=70.1
Q ss_pred ccCCccCcCC--CCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC---C------CccceeeEEEe
Q 004205 397 YQSSYCLESS--LNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD---V------AIPFVIPSAVV 465 (768)
Q Consensus 397 ~~~~~c~~~~--~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---~------~~~~~~p~~~i 465 (768)
.....|.+.. +...+++|||+||+ +|.|.+.+|..+++++||.|+|++++.... . .....+|++.|
T Consensus 28 ~~~~~C~~~~~~~~~~~~~GkIvl~~---~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~i 104 (126)
T cd00538 28 GPLVGCGYGTTDDSGADVKGKIVLVR---RGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGI 104 (126)
T ss_pred cceEEEecCcccccCCCccceEEEEE---CCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEe
Confidence 4456788776 67788999999998 577999999999999999999999887642 1 13457999999
Q ss_pred chhhHHHHHHHHhccCccE
Q 004205 466 GKKTGNKILSYISHTSKAI 484 (768)
Q Consensus 466 ~~~~g~~l~~~~~~~~~~~ 484 (768)
+.++|+.|+.++.++.+..
T Consensus 105 s~~~g~~l~~~~~~~~~v~ 123 (126)
T cd00538 105 SYADGEALLSLLEAGKTVT 123 (126)
T ss_pred CHHHHHHHHHHHhcCCceE
Confidence 9999999999998765443
No 61
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.41 E-value=1.5e-06 Score=80.51 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=66.8
Q ss_pred cCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCCC----CccceeeEEEechhhHHHH
Q 004205 398 QSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKDV----AIPFVIPSAVVGKKTGNKI 473 (768)
Q Consensus 398 ~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~----~~~~~~p~~~i~~~~g~~l 473 (768)
....|.+...+..+++|||+|++ ||+|.|.+|..+++++||.++|+||+..... .+...+|.+.+ +++|++|
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~---rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l 115 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVR---RGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAW 115 (129)
T ss_pred CcccCcCCCcccccccCeEEEEE---CCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHH
Confidence 34679887666568999999999 6789999999999999999999998876542 22334566666 9999999
Q ss_pred HHHHhccCccEE
Q 004205 474 LSYISHTSKAIS 485 (768)
Q Consensus 474 ~~~~~~~~~~~~ 485 (768)
++.+..+...++
T Consensus 116 ~~~l~~G~~vtv 127 (129)
T cd02124 116 IDALAAGSNVTV 127 (129)
T ss_pred HHHHhcCCeEEE
Confidence 999987765443
No 62
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.41 E-value=1.6e-06 Score=80.21 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=67.8
Q ss_pred CCccCcCCCC--CC----CCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC---C-----------Cccc
Q 004205 399 SSYCLESSLN--ST----KARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD---V-----------AIPF 458 (768)
Q Consensus 399 ~~~c~~~~~~--~~----~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---~-----------~~~~ 458 (768)
.+.|.+.... +. ...+||+|++ ||+|.|.+|..+++++||.++|++|+.... + ....
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~---RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i 98 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLD---RGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKI 98 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEE---CCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCc
Confidence 4678876442 22 3788999999 689999999999999999999999987653 1 1123
Q ss_pred eeeEEEechhhHHHHHHHHhccCccEEE
Q 004205 459 VIPSAVVGKKTGNKILSYISHTSKAISK 486 (768)
Q Consensus 459 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 486 (768)
.+|+++|+..+|+.|++.+.++....++
T Consensus 99 ~IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 99 TIPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 6999999999999999999887765543
No 63
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.41 E-value=1.5e-06 Score=79.11 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=64.8
Q ss_pred ccCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC----C-----CccceeeEEEech
Q 004205 397 YQSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD----V-----AIPFVIPSAVVGK 467 (768)
Q Consensus 397 ~~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~----~-----~~~~~~p~~~i~~ 467 (768)
.....|.+. +..+++|||+|++ ||+|+|.+|..+++++||.++|++|+.... + .....+|++++++
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~---RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~ 99 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVL---RGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSR 99 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEE---CCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcH
Confidence 345679766 5578999999999 689999999999999999999999877642 1 1234799999999
Q ss_pred hhHHHHHHHHhc
Q 004205 468 KTGNKILSYISH 479 (768)
Q Consensus 468 ~~g~~l~~~~~~ 479 (768)
+++++|+.++..
T Consensus 100 ~~g~~L~~l~~~ 111 (117)
T cd04813 100 TSYHLLSSLLPK 111 (117)
T ss_pred HHHHHHHHhccc
Confidence 999999988754
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.30 E-value=4.2e-06 Score=80.13 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=67.9
Q ss_pred CCccCcCCCCC---CCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC---C-C-----ccceeeEEEec
Q 004205 399 SSYCLESSLNS---TKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD---V-A-----IPFVIPSAVVG 466 (768)
Q Consensus 399 ~~~c~~~~~~~---~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---~-~-----~~~~~p~~~i~ 466 (768)
...|.+....+ .++.|||+|++ ||+|+|.+|..+++++||.++|++|+.... + . ....+|+++|+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~---RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is 126 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIR---RGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVG 126 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEE---CCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEee
Confidence 45788766544 78999999999 689999999999999999999999987653 1 1 13589999999
Q ss_pred hhhHHHHHHHHhccCc
Q 004205 467 KKTGNKILSYISHTSK 482 (768)
Q Consensus 467 ~~~g~~l~~~~~~~~~ 482 (768)
..+|+.|+.++.....
T Consensus 127 ~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 127 KSTGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999987654
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.95 E-value=3.8e-05 Score=71.28 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=62.4
Q ss_pred ccCcCCCCCCCCCCeEEEEeecCCCch--hHHHHHHHHHHcCceEEEEEcCCCCCCC----------ccceeeEEEechh
Q 004205 401 YCLESSLNSTKARGKVLVCRHAESSTE--SKLRKSMVVKEAGGVGMILVDEPGKDVA----------IPFVIPSAVVGKK 468 (768)
Q Consensus 401 ~c~~~~~~~~~~~gkivl~~~~~~g~~--~~~~k~~~~~~~Ga~g~i~~n~~~~~~~----------~~~~~p~~~i~~~ 468 (768)
.+.+.++...+++|||+|++ ++.+ .+.+|..+++++||.|+|++|+...... ....+|++.|+.+
T Consensus 32 ~G~~~d~~~~~v~GkIvlv~---~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~e 108 (127)
T cd04819 32 YGLPKDFDGLDLEGKIAVVK---RDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGE 108 (127)
T ss_pred CCCHHHcCCCCCCCeEEEEE---cCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHH
Confidence 33334455667999999999 4667 8899999999999999999987766411 1346999999999
Q ss_pred hHHHHHHHHhccC
Q 004205 469 TGNKILSYISHTS 481 (768)
Q Consensus 469 ~g~~l~~~~~~~~ 481 (768)
||+.|+..++.+.
T Consensus 109 dg~~L~~~l~~g~ 121 (127)
T cd04819 109 DGLRLARVAERND 121 (127)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987643
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.08 E-value=0.0017 Score=60.80 Aligned_cols=75 Identities=9% Similarity=0.109 Sum_probs=59.0
Q ss_pred CCCCCCCeEEEEeecCCCch------hHHHH-------HHHHHHcCceEEEEEcCCCC-------C-C---CccceeeEE
Q 004205 408 NSTKARGKVLVCRHAESSTE------SKLRK-------SMVVKEAGGVGMILVDEPGK-------D-V---AIPFVIPSA 463 (768)
Q Consensus 408 ~~~~~~gkivl~~~~~~g~~------~~~~k-------~~~~~~~Ga~g~i~~n~~~~-------~-~---~~~~~~p~~ 463 (768)
+..+++|||+++. ++.| .|..| ...++++||.++|++|.... . . .....+|++
T Consensus 34 ~~~~v~GKIvlv~---~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v 110 (134)
T cd04815 34 PAGAVKGKIVFFN---QPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAA 110 (134)
T ss_pred chhhcCCeEEEec---CCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEE
Confidence 4568999999998 5778 88887 68999999999999985422 1 1 112459999
Q ss_pred EechhhHHHHHHHHhccCccEE
Q 004205 464 VVGKKTGNKILSYISHTSKAIS 485 (768)
Q Consensus 464 ~i~~~~g~~l~~~~~~~~~~~~ 485 (768)
.|+.+|+..|...+..+..+.+
T Consensus 111 ~is~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 111 AISVEDADMLERLAARGKPIRV 132 (134)
T ss_pred EechhcHHHHHHHHhCCCCeEE
Confidence 9999999999999887654443
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.00 E-value=0.00095 Score=65.17 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=55.1
Q ss_pred CCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC--------------------------------CC-
Q 004205 409 STKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD--------------------------------VA- 455 (768)
Q Consensus 409 ~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~--------------------------------~~- 455 (768)
..+++|||+|++ +|.|.+.+|+.+++++||.|+|+|++.... ..
T Consensus 51 gv~v~GkIvLvr---~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~ 127 (183)
T cd02128 51 GVSVNGSVVLVR---AGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPP 127 (183)
T ss_pred CCCCCCeEEEEE---CCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCc
Confidence 568999999999 578999999999999999999999884110 00
Q ss_pred ----ccceeeEEEechhhHHHHHHHHhc
Q 004205 456 ----IPFVIPSAVVGKKTGNKILSYISH 479 (768)
Q Consensus 456 ----~~~~~p~~~i~~~~g~~l~~~~~~ 479 (768)
.--.||+..|+..++..|++.+.-
T Consensus 128 ~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 128 SQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred ccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012488999999999999998753
No 68
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.64 E-value=0.067 Score=47.33 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=63.7
Q ss_pred CccEEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCCCCceEEEEEEEEcCceEEEEE
Q 004205 675 KGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKNGKLRVTSP 754 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~~v~~P 754 (768)
....+.+++|+|.+.....|++.......-.++++|..-.+ ++|++.++.|+|.+.. ..+.+++.|.+.-++..+.+|
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~~g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-PLGDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-CCceEEEEEEEEECCeEEEEE
Confidence 45667778999999999999997644234557777776666 7899999999999533 345688999988777788888
Q ss_pred EEEEE
Q 004205 755 LVVQV 759 (768)
Q Consensus 755 ~~~~~ 759 (768)
+-+.+
T Consensus 97 v~a~~ 101 (102)
T PF14874_consen 97 VKAEV 101 (102)
T ss_pred EEEEE
Confidence 87653
No 69
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.31 E-value=0.011 Score=64.47 Aligned_cols=79 Identities=15% Similarity=0.270 Sum_probs=65.3
Q ss_pred CCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC---------CCccceeeEEEechhhHHHHHHHHhc
Q 004205 409 STKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD---------VAIPFVIPSAVVGKKTGNKILSYISH 479 (768)
Q Consensus 409 ~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---------~~~~~~~p~~~i~~~~g~~l~~~~~~ 479 (768)
...++||++++. ||+|.|.+|.+.++++||.++++.|+.... ...+..||+++|++.+++.+.+...+
T Consensus 91 ~~kl~~~~~~v~---RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~ 167 (541)
T KOG2442|consen 91 QSKLSGKVALVF---RGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS 167 (541)
T ss_pred CccccceeEEEe---cccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence 456899999999 799999999999999999999999995443 22356799999999999999987777
Q ss_pred cCccEEEEecC
Q 004205 480 TSKAISKIFPA 490 (768)
Q Consensus 480 ~~~~~~~i~~~ 490 (768)
+.+.++.+..+
T Consensus 168 ~~~V~~~lYaP 178 (541)
T KOG2442|consen 168 NDNVELALYAP 178 (541)
T ss_pred CCeEEEEEECC
Confidence 77666665544
No 70
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=95.70 E-value=0.017 Score=54.21 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=42.6
Q ss_pred CccCcCCCCCCCCCCeEEEEeecCCCch---------------hHHHHHHHHHHcCceEEEEEcCCCCC
Q 004205 400 SYCLESSLNSTKARGKVLVCRHAESSTE---------------SKLRKSMVVKEAGGVGMILVDEPGKD 453 (768)
Q Consensus 400 ~~c~~~~~~~~~~~gkivl~~~~~~g~~---------------~~~~k~~~~~~~Ga~g~i~~n~~~~~ 453 (768)
..|...++...|++|||+|+.++..... .+..|...+.++||.|+|++++....
T Consensus 34 ~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~~~ 102 (142)
T cd04814 34 PELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELAPA 102 (142)
T ss_pred CCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCCcc
Confidence 4577778888999999999985422110 47789999999999999999987643
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.57 E-value=0.038 Score=52.53 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=54.1
Q ss_pred CccCcCCCCCCCCCCeEEEEeecCC---------------CchhHHHHHHHHHHcCceEEEEEcCCCCCCCcccee----
Q 004205 400 SYCLESSLNSTKARGKVLVCRHAES---------------STESKLRKSMVVKEAGGVGMILVDEPGKDVAIPFVI---- 460 (768)
Q Consensus 400 ~~c~~~~~~~~~~~gkivl~~~~~~---------------g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~---- 460 (768)
..|...++...+++|||+|+.++.. .-|.+..|..++.++||.|+|++++...........
T Consensus 34 ~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~~~ 113 (151)
T cd04822 34 PELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSHSGDADRLPRFG 113 (151)
T ss_pred cccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcccCcccccccccC
Confidence 4466667778899999999986531 116788999999999999999999876652222112
Q ss_pred --eEEEechhhHHHHHHH
Q 004205 461 --PSAVVGKKTGNKILSY 476 (768)
Q Consensus 461 --p~~~i~~~~g~~l~~~ 476 (768)
..+.++....+.+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 114 GTAPQRVDIAAADPWFTA 131 (151)
T ss_pred ccceEEechHHHHHHhhh
Confidence 2556666666666553
No 72
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.52 E-value=0.026 Score=52.65 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=41.4
Q ss_pred CccCcCCCCCCCCCCeEEEEeecCCCc---------hhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 400 SYCLESSLNSTKARGKVLVCRHAESST---------ESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 400 ~~c~~~~~~~~~~~gkivl~~~~~~g~---------~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
..|...++...+++|||+|+.++.... ..+..|.+++.++||.|+|++++...
T Consensus 36 ~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 36 PELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred cCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 457777777889999999999542110 13778999999999999999998654
No 73
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=94.49 E-value=0.044 Score=55.50 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=42.8
Q ss_pred cccCCccCcCCCC-----CCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 396 PYQSSYCLESSLN-----STKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 396 ~~~~~~c~~~~~~-----~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
.++...|...+++ ..+++|||+|++ +|.+.+.+|+.+++++||.|+|+|++...
T Consensus 49 lVyvnyG~~~D~~~L~~~gvdv~GKIvLvr---~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 49 LVYANYGSPEDFEYLEDLGIDVKGKIVIAR---YGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred EEEcCCCcHHHHHHHhhcCCCCCCeEEEEE---CCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 3445566655443 568999999998 56777889999999999999999998644
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.32 E-value=0.25 Score=41.44 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=36.0
Q ss_pred ccEEEEEEEEecCCCc-eeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEec
Q 004205 676 GNFSVTRSVTNVGKPR-SIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLT 731 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~-~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~ 731 (768)
...+++++|+|.|... ...++++..|.|-.+...|..+.--++|++++++++|+++
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP 61 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC
Confidence 4578889999999755 4588888899998877888877633899999999999975
No 75
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=94.16 E-value=0.071 Score=50.13 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=35.8
Q ss_pred CCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCC
Q 004205 410 TKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGK 452 (768)
Q Consensus 410 ~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 452 (768)
.+++|||+|++ .|...+-.|++++++.||.|+|+|.+...
T Consensus 37 V~v~GkIvi~R---yG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLK---LGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEe---ccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 67999999999 56788999999999999999999988643
No 76
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.25 Score=53.03 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=60.8
Q ss_pred CccCcCCC---CCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC-------CCccceeeEEEechhh
Q 004205 400 SYCLESSL---NSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD-------VAIPFVIPSAVVGKKT 469 (768)
Q Consensus 400 ~~c~~~~~---~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-------~~~~~~~p~~~i~~~~ 469 (768)
++|.+... ........++|+. ||+|+|.+|+.+++++|..++|+||+.... ......++..+++...
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~---Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ 139 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIR---RGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFS 139 (348)
T ss_pred cccCccccCccCCCCCcceEEEEE---ccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeeh
Confidence 45766322 2345667889998 678999999999999999999999977765 2345678999999999
Q ss_pred HHHHHHHHhc
Q 004205 470 GNKILSYISH 479 (768)
Q Consensus 470 g~~l~~~~~~ 479 (768)
|+.|++|...
T Consensus 140 ge~l~~~~~~ 149 (348)
T KOG4628|consen 140 GELLSSYAGR 149 (348)
T ss_pred HHHHHHhhcc
Confidence 9999997543
No 77
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=92.00 E-value=0.18 Score=46.91 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=64.3
Q ss_pred cCCccCcCCCCCCCCCCeEEEEeecCCCchhHHHHHHHHHHcCceEEEEEcCCCCC---------CC----ccceeeEEE
Q 004205 398 QSSYCLESSLNSTKARGKVLVCRHAESSTESKLRKSMVVKEAGGVGMILVDEPGKD---------VA----IPFVIPSAV 464 (768)
Q Consensus 398 ~~~~c~~~~~~~~~~~gkivl~~~~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---------~~----~~~~~p~~~ 464 (768)
....|.... +..+..|.++|++ ||+|+|..|..+++++||..+|+..+.... +. +...+|+.+
T Consensus 73 Pp~aC~elr-N~~f~~d~vaL~e---RGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~f 148 (193)
T KOG3920|consen 73 PPHACEELR-NEIFAPDSVALME---RGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVF 148 (193)
T ss_pred ChhHHHHHh-hcccCCCcEEEEe---cCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEE
Confidence 355676532 3456788999999 799999999999999999999998766654 22 245699999
Q ss_pred echhhHHHHHHHHhccCccEEEEe
Q 004205 465 VGKKTGNKILSYISHTSKAISKIF 488 (768)
Q Consensus 465 i~~~~g~~l~~~~~~~~~~~~~i~ 488 (768)
+-..+|-.++.-+..-.-+-+.|.
T Consensus 149 llg~~Gy~ir~sL~r~~r~ha~i~ 172 (193)
T KOG3920|consen 149 LLGVTGYYIRVSLKRYFRDHAKID 172 (193)
T ss_pred EeccceEEEehhHHHhCCccEEEe
Confidence 999888776666655554444444
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.35 E-value=5.5 Score=36.17 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=38.2
Q ss_pred EEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEec
Q 004205 678 FSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLT 731 (768)
Q Consensus 678 ~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~ 731 (768)
-.+++.|.|.+....+|++++..++|+++......+++ ++|++.++.|.+..+
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEEC
Confidence 46779999999999999999999889999665578888 789999999999875
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=90.25 E-value=2.5 Score=38.75 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=49.8
Q ss_pred CccEEEEEEEEecCCCceeEEEEEeC----CCce--------------------EEEEecCEEEEcCCCeEEEEEEEEEe
Q 004205 675 KGNFSVTRSVTNVGKPRSIYKAVVSS----PVGV--------------------TVTVAPERLIFNSYGQKINFTVHFKL 730 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~~ty~~~~~~----~~g~--------------------~v~~~p~~~~~~~~~~~~~~~vt~~~ 730 (768)
...++++++|+|.+++..+|.+.+.. ..|+ -+++ |..+++ +++|+++++++++.
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM 103 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc
Confidence 45789999999999999999997632 1221 1122 444777 78999999999997
Q ss_pred cCC-CCceEEEEEEEEc
Q 004205 731 TSP-PKGYGFGYLSWKN 746 (768)
Q Consensus 731 ~~~-~~~~~~G~i~~~~ 746 (768)
+.. -.+.+-|-|.|+.
T Consensus 104 P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 104 PKKAFDGIILGGIYFSE 120 (121)
T ss_pred CCCCcCCEEEeeEEEEe
Confidence 533 3566777777753
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=81.53 E-value=2.1 Score=41.06 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=34.9
Q ss_pred CCCCCCCCCeEEEEeecCCCch----------------hHHHHHHHHHHcCceEEEEEcCCC
Q 004205 406 SLNSTKARGKVLVCRHAESSTE----------------SKLRKSMVVKEAGGVGMILVDEPG 451 (768)
Q Consensus 406 ~~~~~~~~gkivl~~~~~~g~~----------------~~~~k~~~~~~~Ga~g~i~~n~~~ 451 (768)
++...|++||||++..+..+.. ....|...+.+.||.|+|++++..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 5667899999999985442211 234699999999999999997754
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=79.79 E-value=16 Score=33.21 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=47.8
Q ss_pred ccEEEEEEEEecCCCceeEEEEEeC---CCc----eEEEEecCEEEEcCCCeEEEEEEEEEecC-CCCceEEEEEEEE
Q 004205 676 GNFSVTRSVTNVGKPRSIYKAVVSS---PVG----VTVTVAPERLIFNSYGQKINFTVHFKLTS-PPKGYGFGYLSWK 745 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~~ty~~~~~~---~~g----~~v~~~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~G~i~~~ 745 (768)
+..+..++|+|.++....+.+.+.. ... -.+.++|..+.+ ++|+++.|.| +..+. .......=+|.++
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 3346679999999988888887764 111 257899999999 7899999999 76544 2344445556665
No 82
>COG1470 Predicted membrane protein [Function unknown]
Probab=79.47 E-value=12 Score=41.77 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=56.3
Q ss_pred ccEEEEEEEEecCCCcee-EEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCC-CCceEEEEEEEEcC
Q 004205 676 GNFSVTRSVTNVGKPRSI-YKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSP-PKGYGFGYLSWKNG 747 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~~t-y~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~-~~~~~~G~i~~~~~ 747 (768)
...++...+.|.|+.+.| -++++..|.|-++.|+|.++---++|+++++.+|++++.. ..+-++=+|+-+.+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 457888899999987765 7899999999999999986654489999999999997632 34556666776643
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=79.41 E-value=21 Score=39.88 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=51.2
Q ss_pred ccEEEEEEEEecCCCceeEEEEEe-CCCceEEEEec-----CEEEEcCCCeEEEEEEEEEecCC-CCceEEEEEEEEcC
Q 004205 676 GNFSVTRSVTNVGKPRSIYKAVVS-SPVGVTVTVAP-----ERLIFNSYGQKINFTVHFKLTSP-PKGYGFGYLSWKNG 747 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~~ty~~~~~-~~~g~~v~~~p-----~~~~~~~~~~~~~~~vt~~~~~~-~~~~~~G~i~~~~~ 747 (768)
.+..+++++.|.|....+|.++.. .|+|-...+.- +++.+ ++||+++|+|.+.++.. ..+.|.=.|+-+++
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~pG~Ynv~I~A~s~ 361 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNATPGTYNVTITASSS 361 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCCCCceeEEEEEecc
Confidence 456888999999999999999998 78775554332 23445 78999999999998632 23445555555554
No 84
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=75.46 E-value=2.1 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=21.4
Q ss_pred CCCCCcceEEEEEeCCCCCCCCCCC
Q 004205 140 STKNQVNIIVGFIDTGIWPESPSFS 164 (768)
Q Consensus 140 ~~~Gg~GV~VgVIDtGid~~Hp~f~ 164 (768)
.+.| +||+|||+|||+|+.-|-+.
T Consensus 77 eYDG-RgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDG-RGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCC-CceEEEEeecCCCCCCCCce
Confidence 4668 99999999999999988875
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=74.87 E-value=18 Score=31.87 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=40.4
Q ss_pred CccEEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEec
Q 004205 675 KGNFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLT 731 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~ 731 (768)
......+++|+|.++...-|.+....+.. ..|.|..-.+ ++++++++.|++.+.
T Consensus 17 ~~~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 17 NKQQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp SS-EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SS
T ss_pred CceEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEec
Confidence 34567779999999999999998877665 4566998777 789999999999863
No 86
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=74.39 E-value=19 Score=40.64 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=46.3
Q ss_pred cEEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEec
Q 004205 677 NFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLT 731 (768)
Q Consensus 677 ~~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~ 731 (768)
...+++.+.|.+..+.+|+++++..++.++...+..+++ ++||+.++.|.+..+
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEec
Confidence 456779999999999999999999999888876557788 789999999998875
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=73.00 E-value=31 Score=32.29 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=49.7
Q ss_pred EEEEEEEecCCCc-eeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCCCCceEEEEEEEEc
Q 004205 679 SVTRSVTNVGKPR-SIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKN 746 (768)
Q Consensus 679 t~~~tv~N~~~~~-~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~i~~~~ 746 (768)
.+.+.|-|-.+.. +..++........++--.|..+++ .|++.++++.+++++.-..+.+||.|++..
T Consensus 72 vLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 72 VLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 4445666766532 334555555566777778888888 789999999999987778899999999853
No 88
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=61.47 E-value=45 Score=28.46 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=39.1
Q ss_pred cEEEEEEEEecCCCceeEEEEEeCCCceEEEEecCEEEEcCCCeEEEEEEEEEecCCCCceEEEEEE
Q 004205 677 NFSVTRSVTNVGKPRSIYKAVVSSPVGVTVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLS 743 (768)
Q Consensus 677 ~~t~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~i~ 743 (768)
...+.++++|.|....++++.-..- -.-.|.++++ ++|+++++.+.+. ..++||+=.|+
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y----~~~~~~~~~v-~ag~~~~~~w~l~---~s~gwYDl~v~ 77 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAY----GGGGPWTYTV-AAGQTVSLTWPLA---ASGGWYDLTVT 77 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCc----CCCCCEEEEE-CCCCEEEEEEeec---CCCCcEEEEEE
Confidence 3478899999999888888864211 1123556677 6898888777763 35677764444
No 89
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=49.42 E-value=70 Score=23.52 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=24.9
Q ss_pred EEEEecCCCceeEEEEEeCCCc-eEEEEecCEEEEcCCCeEEEEEEEE
Q 004205 682 RSVTNVGKPRSIYKAVVSSPVG-VTVTVAPERLIFNSYGQKINFTVHF 728 (768)
Q Consensus 682 ~tv~N~~~~~~ty~~~~~~~~g-~~v~~~p~~~~~~~~~~~~~~~vt~ 728 (768)
++++|.|+......-- +..=| ..+. ...-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~v-~tsCgCt~~~--~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDV-QTSCGCTTAE--YSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEe-eEccCCEEee--CCcceE-CCCCEEEEEEEC
Confidence 6789999876654322 11122 2223 222335 789999988874
No 90
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=48.94 E-value=2.8e+02 Score=30.34 Aligned_cols=86 Identities=21% Similarity=0.176 Sum_probs=44.0
Q ss_pred ccEEEEEEEEecCCCceeE---EE-EE--eCCC--------------ceEEEEecCEEEEcCCCeEEEEEEEEEec----
Q 004205 676 GNFSVTRSVTNVGKPRSIY---KA-VV--SSPV--------------GVTVTVAPERLIFNSYGQKINFTVHFKLT---- 731 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~~ty---~~-~~--~~~~--------------g~~v~~~p~~~~~~~~~~~~~~~vt~~~~---- 731 (768)
...+++++|||.|++...- +. .+ -.|. .-.++++|+.- + .+||+++++|+++-.
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~p-I-~PGETrtl~V~a~dA~Wev 340 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSP-I-APGETRTLTVEAQDAAWEV 340 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B--TT-EEEEEEEEE-HHHHH
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCC-c-CCCceEEEEEEeehhHHHH
Confidence 5678889999999876431 11 11 0111 00234444432 2 579999999999731
Q ss_pred -CC------CCceEEEEEEEEcC-ceEEEEEEEEEEecCc
Q 004205 732 -SP------PKGYGFGYLSWKNG-KLRVTSPLVVQVAPSD 763 (768)
Q Consensus 732 -~~------~~~~~~G~i~~~~~-~~~v~~P~~~~~~~~~ 763 (768)
.+ .....-|-|.|.|. +++.-+.+...++|.+
T Consensus 341 eRL~~l~~D~dsrfgGLLff~d~~G~r~i~~I~gpvIP~F 380 (381)
T PF04744_consen 341 ERLSDLIYDPDSRFGGLLFFFDASGNRYISEIAGPVIPKF 380 (381)
T ss_dssp TTGGGGGGSSS-EEEEEEEEEETTS-EEEEEEEEE-EEE-
T ss_pred hhhhhhhcCcccceeEEEEEEcCCCCEEEEeccCcccccc
Confidence 11 23345676777764 5666666666666654
No 91
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=48.78 E-value=47 Score=40.60 Aligned_cols=53 Identities=17% Similarity=0.356 Sum_probs=33.2
Q ss_pred ccEEEEEEEEecCCCceeEEEE--EeCCCceEEEEec-------CEEEEcCCCeEEEEEEEEEec
Q 004205 676 GNFSVTRSVTNVGKPRSIYKAV--VSSPVGVTVTVAP-------ERLIFNSYGQKINFTVHFKLT 731 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~~ty~~~--~~~~~g~~v~~~p-------~~~~~~~~~~~~~~~vt~~~~ 731 (768)
+..+++++|+|+|+....-.+. +..|.+- +. .| .++.+ ++||++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~ 728 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIE 728 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHH
Confidence 4578889999999854443333 3333321 11 12 12344 789999999999864
No 92
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=46.82 E-value=1.3e+02 Score=25.46 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=27.4
Q ss_pred EEEEEEEEecCCCcee--------EEEEEeCCCceEEE---------EecCEEEEcCCCeEEEEEEEEEe
Q 004205 678 FSVTRSVTNVGKPRSI--------YKAVVSSPVGVTVT---------VAPERLIFNSYGQKINFTVHFKL 730 (768)
Q Consensus 678 ~t~~~tv~N~~~~~~t--------y~~~~~~~~g~~v~---------~~p~~~~~~~~~~~~~~~vt~~~ 730 (768)
..++++|+|.++...+ |.+.+....|-.|- -.-...++ ++||+++++.++..
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~ 70 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDL 70 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECC
Confidence 3567888888876544 44455545554442 22234456 78999999988864
No 93
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=44.98 E-value=65 Score=26.89 Aligned_cols=40 Identities=25% Similarity=0.422 Sum_probs=29.4
Q ss_pred EEEEecCEEEEcCCCeEEEEEEEEEecCCCCceEEEEEEEEcCc
Q 004205 705 TVTVAPERLIFNSYGQKINFTVHFKLTSPPKGYGFGYLSWKNGK 748 (768)
Q Consensus 705 ~v~~~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~i~~~~~~ 748 (768)
.+.+.|..+++ ..|+++.|++++++... .. ...+.|++..
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~-~~--~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSA-KV--TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCC-Cc--cceEEEEECC
Confidence 47888999888 58999999999875322 11 6778888654
No 94
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=39.99 E-value=1.6e+02 Score=25.20 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=30.5
Q ss_pred CeEEecCCCccEEEEEEEEecCCCceeEEEEEe-----CCCceEEEEecCEEEEcCCC-eEEEEEEEEEe
Q 004205 667 PSITVPNLKGNFSVTRSVTNVGKPRSIYKAVVS-----SPVGVTVTVAPERLIFNSYG-QKINFTVHFKL 730 (768)
Q Consensus 667 ps~~~~~~~~~~t~~~tv~N~~~~~~ty~~~~~-----~~~g~~v~~~p~~~~~~~~~-~~~~~~vt~~~ 730 (768)
+++.+.+-.+..+ ++|.=.|......++.+. +.+|....-...+|+|. +| ..++|+|.+.-
T Consensus 9 ~~~~V~E~~g~~~--v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~-~ge~~k~i~i~i~d 75 (90)
T smart00237 9 PVYTVSESDGEVE--VCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFP-PGETEKCIRIKIID 75 (90)
T ss_pred CeEEEEECCeEEE--EEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEEC-CCCEEEEEEEEEeC
Confidence 3455555555433 444433333333333332 33455555557778884 45 44666666543
No 95
>PLN03080 Probable beta-xylosidase; Provisional
Probab=37.91 E-value=80 Score=38.68 Aligned_cols=77 Identities=17% Similarity=0.109 Sum_probs=42.6
Q ss_pred cEEEEEEEEecCCCceeEEEEE--eCCCc-e----EEEEecCEEEEcCCCeEEEEEEEEEe-cCC-----CCceE--EEE
Q 004205 677 NFSVTRSVTNVGKPRSIYKAVV--SSPVG-V----TVTVAPERLIFNSYGQKINFTVHFKL-TSP-----PKGYG--FGY 741 (768)
Q Consensus 677 ~~t~~~tv~N~~~~~~ty~~~~--~~~~g-~----~v~~~p~~~~~~~~~~~~~~~vt~~~-~~~-----~~~~~--~G~ 741 (768)
..+++++|+|+|+......+.+ ..|.. + +--+-=.++.+ ++||+++++++++. ..+ .+.|+ .|.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~ 763 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPLGD 763 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeCcc
Confidence 4788899999998655444443 33322 1 00011123344 78999999999975 322 23332 354
Q ss_pred EEEE--cCceEEEEE
Q 004205 742 LSWK--NGKLRVTSP 754 (768)
Q Consensus 742 i~~~--~~~~~v~~P 754 (768)
..+. +..|.|+++
T Consensus 764 y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 764 HVLMLGDLEHSLSIE 778 (779)
T ss_pred EEEEEeCCccceEEe
Confidence 4433 345666664
No 96
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=36.92 E-value=2.6e+02 Score=23.62 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=31.7
Q ss_pred CccEEEEEEEEecCCCc-eeEEEEEeCCCceEEEEecCEE-EEcCCCeEEEEEEEEEec
Q 004205 675 KGNFSVTRSVTNVGKPR-SIYKAVVSSPVGVTVTVAPERL-IFNSYGQKINFTVHFKLT 731 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~-~ty~~~~~~~~g~~v~~~p~~~-~~~~~~~~~~~~vt~~~~ 731 (768)
....+++.+|+|.|... ..+.+.+.. .|..+ .-..+ .+ ++|++.++++++.++
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~-~~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYL-DGNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEE-TTEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEE-CCcee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 45788899999999854 456666543 22222 11122 34 689999998888865
No 97
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.59 E-value=4.1e+02 Score=26.18 Aligned_cols=70 Identities=13% Similarity=0.329 Sum_probs=41.9
Q ss_pred CccEEEEEEEEecCCCceeEEEEEeC----CCceEEEEecCEEEEc--CCCeEEEEEEEEEecCCCCceEE--EEEEEEc
Q 004205 675 KGNFSVTRSVTNVGKPRSIYKAVVSS----PVGVTVTVAPERLIFN--SYGQKINFTVHFKLTSPPKGYGF--GYLSWKN 746 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~~ty~~~~~~----~~g~~v~~~p~~~~~~--~~~~~~~~~vt~~~~~~~~~~~~--G~i~~~~ 746 (768)
....+++.+|.|.|+. .-|.+++.. +..+++.--..+.++. ++|++.+.++++++.. .+.+.+ ..++.++
T Consensus 37 g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~-~G~f~~~~a~VtY~~ 114 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK-SGYFNFTPAVVTYRD 114 (181)
T ss_pred CcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee-eEEEEccCEEEEEEC
Confidence 3568889999999986 457777654 2344432111222222 7899999999988743 333333 3455544
No 98
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=34.35 E-value=18 Score=16.55 Aligned_cols=6 Identities=67% Similarity=0.867 Sum_probs=4.3
Q ss_pred cccCCC
Q 004205 504 AFSSKG 509 (768)
Q Consensus 504 ~fSs~G 509 (768)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577776
No 99
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=34.30 E-value=43 Score=24.16 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=19.4
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhhcc
Q 004205 559 ATLIKAVHPSWSPSAIKSAIMTTAT 583 (768)
Q Consensus 559 aALl~q~~p~lsp~~ik~~L~~TA~ 583 (768)
+--+++.+|+++++.|+..|...-.
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCC
Confidence 3457889999999999999976543
No 100
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=32.48 E-value=2.3e+02 Score=24.83 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=35.6
Q ss_pred CCccEEEEEEEEecCCCc-eeEEEEE----eCCCceE---EEEecCEEEEcCCCeEEEEEEEEEec
Q 004205 674 LKGNFSVTRSVTNVGKPR-SIYKAVV----SSPVGVT---VTVAPERLIFNSYGQKINFTVHFKLT 731 (768)
Q Consensus 674 ~~~~~t~~~tv~N~~~~~-~ty~~~~----~~~~g~~---v~~~p~~~~~~~~~~~~~~~vt~~~~ 731 (768)
.....++.++++|..+.. .+-++.. ..-.|+. .......+++ +++++.++++++.+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTL-KPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceee-CCCCEEEEEEEEEce
Confidence 356788899999999877 4433322 1234553 4555556667 789999999999864
No 101
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=32.05 E-value=1.8e+02 Score=25.52 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=25.2
Q ss_pred CccEEEEEEEEecCCCcee----EEEE-E--------eCCCceEEEEe-cCEEEEcCCCeEEEEEEE
Q 004205 675 KGNFSVTRSVTNVGKPRSI----YKAV-V--------SSPVGVTVTVA-PERLIFNSYGQKINFTVH 727 (768)
Q Consensus 675 ~~~~t~~~tv~N~~~~~~t----y~~~-~--------~~~~g~~v~~~-p~~~~~~~~~~~~~~~vt 727 (768)
.+..+++++|+|.|+.+.. |.+- + ....|..+.+- -+.+.| ++|+++++++.
T Consensus 16 ~gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRF-EPG~~k~V~LV 81 (100)
T PF00699_consen 16 AGRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRF-EPGDTKEVELV 81 (100)
T ss_dssp TTSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE--TT-EEEEEEE
T ss_pred CCCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEE-CCCCcEEEEEE
Confidence 3567888999999997532 1110 0 01123333331 124556 78888887664
No 102
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=31.36 E-value=1.4e+02 Score=26.29 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=29.7
Q ss_pred ccEEEEEEEEecCCCcee----EEEE-E--------eCCCceEEEEe-cCEEEEcCCCeEEEEEEE
Q 004205 676 GNFSVTRSVTNVGKPRSI----YKAV-V--------SSPVGVTVTVA-PERLIFNSYGQKINFTVH 727 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~~t----y~~~-~--------~~~~g~~v~~~-p~~~~~~~~~~~~~~~vt 727 (768)
+..+++++|+|.|+.+.. |.+- + ....|..+.+- -+.+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEEE
Confidence 556778999999996532 3221 0 11224444431 234567 78999987765
No 103
>PRK15019 CsdA-binding activator; Provisional
Probab=30.64 E-value=49 Score=31.38 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=28.1
Q ss_pred EEeccccchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 004205 543 NILSGTSMACPHVTGIATLIKAVHPSWSPSAIKS 576 (768)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~ 576 (768)
..+.|.| =|+.|-|.+||+.+.+-..+|+||.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4445665 68999999999999999999999876
No 104
>PRK13203 ureB urease subunit beta; Reviewed
Probab=29.89 E-value=1.4e+02 Score=26.21 Aligned_cols=51 Identities=24% Similarity=0.334 Sum_probs=29.5
Q ss_pred ccEEEEEEEEecCCCcee----EEEE-E--------eCCCceEEEEe-cCEEEEcCCCeEEEEEEE
Q 004205 676 GNFSVTRSVTNVGKPRSI----YKAV-V--------SSPVGVTVTVA-PERLIFNSYGQKINFTVH 727 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~~t----y~~~-~--------~~~~g~~v~~~-p~~~~~~~~~~~~~~~vt 727 (768)
+..+++++|+|.|+.+.. |.+- + ....|..+.+- -+.+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 556778999999996532 2221 0 11223333331 234566 78999987764
No 105
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=29.53 E-value=54 Score=30.79 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=29.1
Q ss_pred eEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004205 542 FNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSA 577 (768)
Q Consensus 542 y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~ 577 (768)
-..+.|.| =|+.|-|++||+++.+-..+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34455666 589999999999999999999998754
No 106
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=28.84 E-value=1.6e+02 Score=25.96 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=29.6
Q ss_pred ccEEEEEEEEecCCCcee----EEEE-E--------eCCCceEEEEe-cCEEEEcCCCeEEEEEEE
Q 004205 676 GNFSVTRSVTNVGKPRSI----YKAV-V--------SSPVGVTVTVA-PERLIFNSYGQKINFTVH 727 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~~t----y~~~-~--------~~~~g~~v~~~-p~~~~~~~~~~~~~~~vt 727 (768)
+..+++++|+|.|+.+.. |.+- + ....|..+.+- -+.+.| ++|+++++++-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF-EPGEEKSVELV 82 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 556778999999996532 3221 0 11223333331 234566 78999987765
No 107
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=26.68 E-value=64 Score=30.28 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=28.0
Q ss_pred EEeccccchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 004205 543 NILSGTSMACPHVTGIATLIKAVHPSWSPSAIKS 576 (768)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~ 576 (768)
..+.|.| =|+.|-|.+||+.+.+-..||+||.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4445666 68999999999999999999999875
No 108
>PRK13202 ureB urease subunit beta; Reviewed
Probab=26.06 E-value=1.8e+02 Score=25.63 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=28.7
Q ss_pred EEEEEEEEecCCCcee----EEEEE---------eCCCceEEEEe-cCEEEEcCCCeEEEEEEE
Q 004205 678 FSVTRSVTNVGKPRSI----YKAVV---------SSPVGVTVTVA-PERLIFNSYGQKINFTVH 727 (768)
Q Consensus 678 ~t~~~tv~N~~~~~~t----y~~~~---------~~~~g~~v~~~-p~~~~~~~~~~~~~~~vt 727 (768)
.+++++|+|.|+.+.. |.+-- ....|..+.+- -+.+.| ++|+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEEE
Confidence 5778999999996532 32210 11223333331 234567 78999987765
No 109
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=26.04 E-value=57 Score=22.38 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHH
Q 004205 550 MACPHVTGIATLI 562 (768)
Q Consensus 550 mAaP~VAG~aALl 562 (768)
.|||.+||++|-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 4899999998854
No 110
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=24.46 E-value=79 Score=29.11 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=27.2
Q ss_pred EEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 004205 543 NILSGTSMACPHVTGIATLIKAVHPSWSPSAIKSA 577 (768)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~ 577 (768)
..+.|.|= |+.|-|++||+++.+-..+|+||.+.
T Consensus 58 ~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 58 VHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 35556665 67999999999999999999998764
No 111
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.95 E-value=72 Score=30.04 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=27.5
Q ss_pred eEEeccccchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 004205 542 FNILSGTSMACPHVTGIATLIKAVHPSWSPSAIKS 576 (768)
Q Consensus 542 y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~ 576 (768)
-..+.|=|= |++|.|.+|++++.+-..||++|.+
T Consensus 71 ~~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 71 TLHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred eEEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 445556664 6899999999999999999998753
No 112
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=23.59 E-value=1.2e+02 Score=21.89 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhhc
Q 004205 558 IATLIKAVHPSWSPSAIKSAIMTTA 582 (768)
Q Consensus 558 ~aALl~q~~p~lsp~~ik~~L~~TA 582 (768)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998643
No 113
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=23.26 E-value=9.3e+02 Score=30.10 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=34.7
Q ss_pred CeEEecCCCccEEEEEEEEecC-CCceeEEEEEe-----CCCceEEEEecCEEEEcCCCeE-EEEEEEEEec
Q 004205 667 PSITVPNLKGNFSVTRSVTNVG-KPRSIYKAVVS-----SPVGVTVTVAPERLIFNSYGQK-INFTVHFKLT 731 (768)
Q Consensus 667 ps~~~~~~~~~~t~~~tv~N~~-~~~~ty~~~~~-----~~~g~~v~~~p~~~~~~~~~~~-~~~~vt~~~~ 731 (768)
++..+.+-.+..+ ++|+=.| +...+.+|.+. +.+|........+|+| ++||+ ++|+|.+--+
T Consensus 407 ~~Y~V~En~GtV~--VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF-~PGEt~KtItV~IIDD 475 (928)
T TIGR00845 407 GHYTCLENCGTVA--LTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVF-KPGETQKEFRIGIIDD 475 (928)
T ss_pred CeEEEeecCcEEE--EEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEE-CCCceEEEEEEEEccC
Confidence 3455555445444 5544333 33334444443 3456666667789999 56655 6777776543
No 114
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=22.51 E-value=75 Score=24.63 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=23.6
Q ss_pred eEEeccccchhHHHHHHHH------HHHHhCCCCCHHHHHHHHH
Q 004205 542 FNILSGTSMACPHVTGIAT------LIKAVHPSWSPSAIKSAIM 579 (768)
Q Consensus 542 y~~~sGTSmAaP~VAG~aA------Ll~q~~p~lsp~~ik~~L~ 579 (768)
--.+.||=+..=.|....+ -+.+.+|.|++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 4456677776666655543 3566799999999999984
No 115
>PRK13201 ureB urease subunit beta; Reviewed
Probab=22.26 E-value=2.2e+02 Score=26.31 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=29.5
Q ss_pred ccEEEEEEEEecCCCcee----EEEE-E--------eCCCceEEEEe-cCEEEEcCCCeEEEEEEE
Q 004205 676 GNFSVTRSVTNVGKPRSI----YKAV-V--------SSPVGVTVTVA-PERLIFNSYGQKINFTVH 727 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~~t----y~~~-~--------~~~~g~~v~~~-p~~~~~~~~~~~~~~~vt 727 (768)
+..+++++|+|.|+.+.. |.+- + ....|..+.+- -+.+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~LV 82 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRF-EPGDKKEVQLV 82 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 556778999999996532 3221 0 11223333331 234566 78999987765
No 116
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=22.03 E-value=2.7e+02 Score=21.19 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=24.2
Q ss_pred CCccEEEEEEEEecCCCcee-EEEEEeCCCceEEEEecCEEEE
Q 004205 674 LKGNFSVTRSVTNVGKPRSI-YKAVVSSPVGVTVTVAPERLIF 715 (768)
Q Consensus 674 ~~~~~t~~~tv~N~~~~~~t-y~~~~~~~~g~~v~~~p~~~~~ 715 (768)
.....+++++++|.|....+ ..+.-..|.|+.+. |.++++
T Consensus 10 ~Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~v--~~S~~~ 50 (53)
T TIGR01451 10 IGDTITYTITVTNNGNVPATNVVVTDILPSGTTFV--SNSVTV 50 (53)
T ss_pred CCCEEEEEEEEEECCCCceEeEEEEEcCCCCCEEE--eCcEEE
Confidence 35678899999999986654 33333445554332 444443
No 117
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=21.17 E-value=3.4e+02 Score=27.92 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=38.2
Q ss_pred cEEEEEEEEecCCCceeEEEEEe---CC---Cc----------eEEEEecCEEEEcCCCeEEEEEEEEEe
Q 004205 677 NFSVTRSVTNVGKPRSIYKAVVS---SP---VG----------VTVTVAPERLIFNSYGQKINFTVHFKL 730 (768)
Q Consensus 677 ~~t~~~tv~N~~~~~~ty~~~~~---~~---~g----------~~v~~~p~~~~~~~~~~~~~~~vt~~~ 730 (768)
.....++|.|.|+....+++.+. .| .+ -.+-++|..+++ ++|+++.|.|.-..
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 44456899999999888888762 11 11 147788999999 68888888876553
No 118
>PRK13205 ureB urease subunit beta; Reviewed
Probab=20.59 E-value=2.4e+02 Score=26.64 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=29.6
Q ss_pred ccEEEEEEEEecCCCcee----EEEEE---------eCCCceEEEEe-cCEEEEcCCCeEEEEEEE
Q 004205 676 GNFSVTRSVTNVGKPRSI----YKAVV---------SSPVGVTVTVA-PERLIFNSYGQKINFTVH 727 (768)
Q Consensus 676 ~~~t~~~tv~N~~~~~~t----y~~~~---------~~~~g~~v~~~-p~~~~~~~~~~~~~~~vt 727 (768)
+..+++++|+|.|+.+.. |.+-- ....|..+.+- -+.+.| ++|+++++++.
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRF-EPGe~ktV~LV 82 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRL-EPGDARTVNLV 82 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 556788999999996532 33210 11223333331 234566 78888887765
No 119
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=20.51 E-value=6.2e+02 Score=22.59 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=43.5
Q ss_pred CCCcEeeeeeecCCCCCHHHHHHHHHHHHHcCCcEEEeccCCCCCC---CCCchhHHHHHHHHhhcCCcEEEE
Q 004205 256 PMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHILSLSLGPEAPQ---GDYFSDAISIGSFHATSRGILVVA 325 (768)
Q Consensus 256 P~A~L~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~---~~~~~~~~~~a~~~a~~~Gi~vV~ 325 (768)
++++|+.+ +.++||....++.-+++..+.|+++|-+|-...... .-..-+.+...+..+. |+.||.
T Consensus 36 ~~~elvgf--~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 36 EDVELVGF--FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred CCeEEEEE--eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHh--CCCEee
Confidence 46777765 445678899999999999999999999987654311 1012344444443333 887774
Done!