BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004207
(768 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 21/221 (9%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FS
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFS 394
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P +A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 395 PDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VK 451
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
W+ N + S + F P G+ +A+A ++ +T++LW
Sbjct: 452 LWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDD----------------KTVKLW 494
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
N TL+ H V +A S +ASAS DK VK+W
Sbjct: 495 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 21/220 (9%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V F P
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVNGVAFRP 272
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 273 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 329
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWN 727
W+ N + S + F P G+ +A+A ++ +T++LWN
Sbjct: 330 WNRNGQHLQTLTGHSSSVWGVAFSPD-GQTIASASDD----------------KTVKLWN 372
Query: 728 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
TL+ H V +A S +ASAS DK VK+W
Sbjct: 373 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 21/220 (9%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 108
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 109 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 165
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWN 727
W+ N + S + F P G+ +A+A ++ +T++LWN
Sbjct: 166 WNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDD----------------KTVKLWN 208
Query: 728 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
TL+ H V +A S +ASAS DK VK+W
Sbjct: 209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 21/220 (9%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 231
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 232 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT-VKL 288
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWN 727
W+ N + S + F P G+ +A+A ++ +T++LWN
Sbjct: 289 WNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDD----------------KTVKLWN 331
Query: 728 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
TL+ H V +A S +ASAS DK VK+W
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 21/220 (9%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 436
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 437 DDQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKL 493
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWN 727
W+ N + S + F P G+ +A+A ++ +T++LWN
Sbjct: 494 WNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDD----------------KTVKLWN 536
Query: 728 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
TL+ H V +A S +ASAS DK VK+W
Sbjct: 537 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 21/221 (9%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
E + A +S V FSPDG+ +A+ DK LW ++ TL H+ + V FS
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFS 66
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P +A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 67 PDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VK 123
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
W+ N + S + F P G+ +A+A ++ +T++LW
Sbjct: 124 LWNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDD----------------KTVKLW 166
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
N TL+ H V +A S +ASAS DK VK+W
Sbjct: 167 NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 28/244 (11%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V F PDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 313
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ N + L+T TGHS++V + F P + + + D+ + ++
Sbjct: 314 DGQTIASASDDKTVKLWN-RNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 370
Query: 668 WSIN----------NGSCAGVFKCQSGAT--------QMRFQPRLGRILAAAIENYISIL 709
W+ N + S GV G T ++ R G++L + S+
Sbjct: 371 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 430
Query: 710 DV------ETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 763
V +T +T++LWN TL+ H V +A S +ASAS DK
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 764 VKIW 767
VK+W
Sbjct: 491 VKLW 494
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 559
Query: 608 SLSRLATSSADRTVRVWD 625
+A++S+D+TV++W+
Sbjct: 560 DGQTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 51/266 (19%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V+ F GKLLA+ D LW + F T+ H ++ V P+
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWS 669
+ ++S D+T+++W+ + Y ++TFTGH V + P+++ L+ SC N+ +R W
Sbjct: 206 HIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWV 262
Query: 670 INNGSCAG-------VFKCQSGATQMRFQ----------PRLGR----ILAAAIENYISI 708
+ C V +C S A + + + G+ +L+ + + I +
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 709 LDVETQVCRLKL-------------------------QTLELWNMTENKTL-TLSAHDKL 742
DV T +C + L +TL +W+ + + TL+AH+
Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF 382
Query: 743 VSSLAASTVNGMVASASHDKCVKIWK 768
V+SL V + S D+ VK+W+
Sbjct: 383 VTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
K L H +T V F P S + ++S D T++VWD E D+ RT GH+ +V + F
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISFD 159
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISI 708
S + LL SC + I+ W C + + P I++A+ + I +
Sbjct: 160 HSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 218
Query: 709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
+V+T C T + H + V + + ++AS S+D+ V++W
Sbjct: 219 WEVQTGYC----------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 99/253 (39%), Gaps = 51/253 (20%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F P ++ + D +W E+ + TL+ HT + D+ F S LA+ SAD T++
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
+WD + + +RT GH V S+ P+ D + S + I+ W + G C F
Sbjct: 176 LWDFQGFE-CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGH 233
Query: 683 SGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKL-------------------- 720
+M +P L A+ N + + V T+ C+ +L
Sbjct: 234 REWVRM-VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 292
Query: 721 -------------------------QTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 754
+T+++W+++ L TL HD V + +
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 755 VASASHDKCVKIW 767
+ S + DK +++W
Sbjct: 353 ILSCADDKTLRVW 365
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 114/267 (42%), Gaps = 34/267 (12%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
+ +L+ S + +R W + G C S + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVCRLKL--------------------------QTLELWNMTENKTL-TLSAH-DKL 742
+ C L TL+LW+ ++ K L T + H ++
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 743 VSSLAASTVNG--MVASASHDKCVKIW 767
A +V G + S S D V IW
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW 267
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 114/267 (42%), Gaps = 34/267 (12%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
+ +L+ S + +R W + G C S + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVCRLKL--------------------------QTLELWNMTENKTL-TLSAH-DKL 742
+ C L TL+LW+ ++ K L T + H ++
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 743 VSSLAASTVNG--MVASASHDKCVKIW 767
A +V G + S S D V IW
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW 267
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 113/267 (42%), Gaps = 34/267 (12%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 710
+ +L+ S + +R W + G C S + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 711 VETQVCRLKL--------------------------QTLELWNMTENKTL-TLSAH-DKL 742
+ C L TL+LW+ ++ K L T + H ++
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 743 VSSLAASTVNG--MVASASHDKCVKIW 767
A +V G + S S D V IW
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIW 267
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 764 VKIW 767
V IW
Sbjct: 267 VYIW 270
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 76
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 77 VAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 705 YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764
+ I DV+T C LK TL AH VS++ + ++ S+S+D
Sbjct: 136 SVRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 765 KIW 767
+IW
Sbjct: 180 RIW 182
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 250 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 282
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 283 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 33/248 (13%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V S FSP+G+ LA+ DK +W + T+ H I+DV +S +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
L ++S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W +
Sbjct: 96 LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 153
Query: 671 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL--------- 720
G C S + + F I++++ + I D + C L
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 213
Query: 721 -----------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASAS 759
TL+LW+ ++ K L T + H ++ A +V G + S S
Sbjct: 214 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 760 HDKCVKIW 767
D V IW
Sbjct: 274 EDNLVYIW 281
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 87
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 88 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 705 YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764
+ I DV+T C LK TL AH VS++ + ++ S+S+D
Sbjct: 147 SVRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 765 KIW 767
+IW
Sbjct: 191 RIW 193
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------CTESFTVKSTLEEHTQWITDV 603
LI V FSP+GK + D LW C +++T ++ ++
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFA 259
Query: 604 RFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--D 660
FS + + + + S D V +W+ + + ++ GH+ V+S HP+ E+++ S +
Sbjct: 260 NFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPT-ENIIASAALE 317
Query: 661 NNSEIRYW 668
N+ I+ W
Sbjct: 318 NDKTIKLW 325
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Query: 625 DTE 627
++
Sbjct: 326 KSD 328
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 88 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 145
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 206 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 265
Query: 764 VKIW 767
V IW
Sbjct: 266 VYIW 269
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 75
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 76 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 705 YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764
+ I DV+T C LK TL AH VS++ + ++ S+S+D
Sbjct: 135 SVRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 765 KIW 767
+IW
Sbjct: 179 RIW 181
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 248
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 249 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 281
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 282 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 314
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Query: 625 DTE 627
++
Sbjct: 314 KSD 316
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 764 VKIW 767
V IW
Sbjct: 267 VYIW 270
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 77
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENY 705
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 78 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 765
+ I DV+T C LK TL AH VS++ + ++ S+S+D +
Sbjct: 137 VRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 766 IW 767
IW
Sbjct: 181 IW 182
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 250 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 282
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 283 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 83 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 260
Query: 764 VKIW 767
V IW
Sbjct: 261 VYIW 264
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 70
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 71 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 705 YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764
+ I DV+T C LK TL AH VS++ + ++ S+S+D
Sbjct: 130 SVRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 765 KIW 767
+IW
Sbjct: 174 RIW 176
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 243
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 244 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 276
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 277 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 625 DTE 627
++
Sbjct: 309 KSD 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 82 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 139
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 200 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 259
Query: 764 VKIW 767
V IW
Sbjct: 260 VYIW 263
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 69
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 70 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 705 YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764
+ I DV+T C LK TL AH VS++ + ++ S+S+D
Sbjct: 129 SVRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
Query: 765 KIW 767
+IW
Sbjct: 173 RIW 175
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 242
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 243 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 275
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 276 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 308
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 248 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Query: 625 DTE 627
++
Sbjct: 308 KSD 310
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 84 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 141
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 202 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 261
Query: 764 VKIW 767
V IW
Sbjct: 262 VYIW 265
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 71
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 72 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 705 YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764
+ I DV+T C LK TL AH VS++ + ++ S+S+D
Sbjct: 131 SVRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
Query: 765 KIW 767
+IW
Sbjct: 175 RIW 177
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 244
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 245 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 277
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 310
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 250 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Query: 625 DTE 627
++
Sbjct: 310 KSD 312
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 764 VKIW 767
V IW
Sbjct: 267 VYIW 270
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 77
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENY 705
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 78 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 765
+ I DV+T C LK TL AH VS++ + ++ S+S+D +
Sbjct: 137 VRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 766 IW 767
IW
Sbjct: 181 IW 182
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 250 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 282
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 283 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Query: 625 DTE 627
++
Sbjct: 315 KSD 317
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 107 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 225 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 284
Query: 764 VKIW 767
V IW
Sbjct: 285 VYIW 288
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 95
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENY 705
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 96 AWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 765
+ I DV+T C LK TL AH VS++ + ++ S+S+D +
Sbjct: 155 VRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 766 IW 767
IW
Sbjct: 199 IW 200
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 267
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 268 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 300
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 301 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 333
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Query: 625 DTE 627
++
Sbjct: 333 KSD 335
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 223 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Query: 764 VKIW 767
V IW
Sbjct: 283 VYIW 286
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 93
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENY 705
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 94 AWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 765
+ I DV+T C LK TL AH VS++ + ++ S+S+D +
Sbjct: 153 VRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 766 IW 767
IW
Sbjct: 197 IW 198
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 265
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 266 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 298
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 299 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 331
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 625 DTE 627
++
Sbjct: 331 KSD 333
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 83 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 260
Query: 764 VKIW 767
V IW
Sbjct: 261 VYIW 264
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 70
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 71 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 705 YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764
+ I DV+T C LK TL AH VS++ + ++ S+S+D
Sbjct: 130 SVRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 765 KIW 767
+IW
Sbjct: 174 RIW 176
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 243
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 244 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 276
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 277 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Query: 625 DTE 627
++
Sbjct: 309 KSD 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 79 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 197 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 256
Query: 764 VKIW 767
V IW
Sbjct: 257 VYIW 260
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 66
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIEN 704
+ + S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 67 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 705 YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764
+ I DV+T C LK TL AH VS++ + ++ S+S+D
Sbjct: 126 SVRIWDVKTGKC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
Query: 765 KIW 767
+IW
Sbjct: 170 RIW 172
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 239
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 240 -FSVTGGK---------------------WIVSGSEDNLVYIWNLQTKEIVQKLQ----- 272
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 273 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 305
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 245 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Query: 625 DTE 627
++
Sbjct: 305 KSD 307
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 86 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
TL+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM 263
Query: 764 VKIW 767
V IW
Sbjct: 264 VYIW 267
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 74
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENY 705
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 75 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 765
+ I DV+T +C LK TL AH VS++ + ++ S+S+D +
Sbjct: 134 VRIWDVKTGMC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 766 IW 767
IW
Sbjct: 178 IW 179
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 246
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 247 -FSVTGGK---------------------WIVSGSEDNMVYIWNLQTKEIVQKLQ----- 279
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 280 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 74
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENY 705
+ S +LL S ++ ++ W +++G C K S F P+ I++ + +
Sbjct: 75 AW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 765
+ I DV+T +C LK TL AH VS++ + ++ S+S+D +
Sbjct: 134 VRIWDVKTGMC-LK---------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 766 IW 767
IW
Sbjct: 178 IW 179
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 33/244 (13%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 86 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------------- 720
C S + + F I++++ + I D + C L
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 721 -------------QTLELWNMTENKTL-TLSAH-DKLVSSLAASTVNG--MVASASHDKC 763
L+LW+ ++ K L T + H ++ A +V G + S S D
Sbjct: 204 SPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM 263
Query: 764 VKIW 767
V IW
Sbjct: 264 VYIW 267
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 59/224 (26%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D +++WD L+T+TGH K + C N
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 246
Query: 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726
+S+ G I++ + +N + I +++T+ KLQ
Sbjct: 247 -FSVTGGK---------------------WIVSGSEDNMVYIWNLQTKEIVQKLQ----- 279
Query: 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 768
H +V S A ++ASA+ +DK +K+WK
Sbjct: 280 -----------GHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624
GK + +G D +W ++ + L+ HT + P+ + +A+++ D+T+++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Query: 625 DTE 627
++
Sbjct: 312 KSD 314
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 89/217 (41%), Gaps = 54/217 (24%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P+S + S FSPDGK LATG D+ +W E+ + L+ H Q I + + PS +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
L + S DRTVR+WD LRT
Sbjct: 180 LVSGSGDRTVRIWD-------LRT------------------------------------ 196
Query: 672 NGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQTLELWNMTE 730
G C+ + G T + P G+ +AA +++ + + D ET +L +E
Sbjct: 197 -GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD-------SE 248
Query: 731 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
N++ T H V S+ + V S S D+ VK+W
Sbjct: 249 NESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 512 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571
GS D V + + AD + F +I ++V+ +S DG LA
Sbjct: 76 GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 572 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
T DK +W T E + S L+EH+Q + V + PS + LA+SS D TVR+W
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 628 NPDYS-LRTFTGHSTTVMSLDFHPSKEDL-LCSCDNNSEIRYW 668
+ D+ + GH TV S DF ++ LCS ++S +R W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 27/216 (12%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADR 619
++P G LLA+ G D++ +W TE S+ KS L E H + + V +SP + LA++S D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 620 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SC 675
T +W D+ + T GH V S+ + PS +LL +C + + W ++ C
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 676 AGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQTLELWNMTENK 732
V + + + P + +A+ ++ + + E VC
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC---------------- 186
Query: 733 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
TL H+ V SLA +AS S D+ V+IW+
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCT---ESFTVKSTLEEHTQWITDVRFSPSLSRL 612
++V+S ++P G LLAT DK +W + + S L HTQ + V + PS L
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 613 ATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
A++S D TV+++ E D+ T GH +TV SL F PS + L SC ++ +R W
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCSDDRTVRIW 221
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--F 587
RD+ EV + + ++ + T V+ + P +LLA+ +D L+ E +
Sbjct: 125 RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184
Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
+TLE H + + F PS RLA+ S DRTVR+W
Sbjct: 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 24/137 (17%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLW------------CT---ESFTVKSTLEE-HTQW 599
S V S F P G+ LA+ D+ +W C+ S+ TL H++
Sbjct: 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254
Query: 600 ITDVRFSPSLSRLATSSADRTVRVW------DTENPDYSL--RTFTGHSTTVMSLDFHPS 651
I D+ + LAT+ D +RV+ D + P +SL HS V + ++P
Sbjct: 255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK 314
Query: 652 KEDLLCSCDNNSEIRYW 668
+ LL SC ++ E+ +W
Sbjct: 315 EPGLLASCSDDGEVAFW 331
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 46/289 (15%)
Query: 522 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
L D + R+ S++ GK FT + + + V +C ++P G +A GG D
Sbjct: 68 LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 577 KKAVLW-----CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
K ++ E+ K ++ HT +++ F+ S ++ T+S D T +WD E+
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 631 YSLRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT 686
L++F GH V+ LD PS+ + CD + + W + +G C F+ +S
Sbjct: 188 L-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFETHESDVN 244
Query: 687 QMRFQP--------------RLGRILA---AAIENYISILDVETQV-----CRLKL---- 720
+R+ P RL + A AI + SI+ + V RL
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304
Query: 721 -QTLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
T+ +W++ + ++ L H+ VS+L S S S D +++W
Sbjct: 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 32/207 (15%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
D +++ TG D +W + + +TL H + + +RF+ + + T S DR++ VWD
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWD 239
Query: 626 TENP-DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-- 681
+P D +L R GH V +DF + + S + I+ W N +C V
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW--NTSTCEFVRTLNG 294
Query: 682 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD 740
+ G ++++ RL +++ + +N I + D+E C L+ LE H+
Sbjct: 295 HKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGAC---LRVLE-------------GHE 336
Query: 741 KLVSSLAASTVNGMVASASHDKCVKIW 767
+LV + N + S ++D +K+W
Sbjct: 337 ELVRCIRFD--NKRIVSGAYDGKIKVW 361
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 12/163 (7%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
DG+ + +G +D +W E+ T TL+ HT + ++F + + S D ++RVWD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWD 305
Query: 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKC 681
E + + T TGH + ++ K+++L S + +S ++ W I G C G K
Sbjct: 306 VETGN-CIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLE 724
QS T ++F ++ ++ + + + D++T L TLE
Sbjct: 362 QSAVTCLQFNKNF--VITSSDDGTVKLWDLKTGEFIRNLVTLE 402
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 78/201 (38%), Gaps = 29/201 (14%)
Query: 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
++ +G D+ +W E+ TL HT + + R+ + S D T+RVWD E
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIET 228
Query: 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM 688
L GH V + + + + S + ++ W +C + G T
Sbjct: 229 GQ-CLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPETETCLHTLQ---GHTNR 281
Query: 689 RFQPRLG--RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSL 746
+ + +++ +++ I + DVET C TL+ H L S +
Sbjct: 282 VYSLQFDGIHVVSGSLDTSIRVWDVETGNC----------------IHTLTGHQSLTSGM 325
Query: 747 AASTVNGMVASASHDKCVKIW 767
+ ++ S + D VKIW
Sbjct: 326 ELK--DNILVSGNADSTVKIW 344
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ + LAT S D +++WD N T GH+ +V F P
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
E LL SC + +R W + + +
Sbjct: 756 E-LLASCSADGTLRLWDVRSAN 776
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 519 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS--PDGKLLATGGHD 576
+S+++ AD + ++ SA T+ E + +V CHF+ + LLATG +D
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 722
Query: 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
LW ++T+ HT + RFSP LA+ SAD T+R+WD + +
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS S
Sbjct: 613 PHTDAVYHAC-FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSI 670
+AT SAD+ V++WD+ + T+ HS V F + S LL + N+ ++ W +
Sbjct: 672 IATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 671 NNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713
N C +F + RF P + + + + + + DV +
Sbjct: 731 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 28/235 (11%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 616 SADRTVRVWDT----ENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
S D+T+RVW+T +N L+ F + T V+++D + L +I
Sbjct: 901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD---NIRGLQLIAGKTGQID 957
Query: 667 YWSINNGSCAGV--------FKCQSGATQMRFQPRLGRILAAAIENYISILDVE------ 712
Y SC + F + GA ++ P R+ ++ + + ++ ++
Sbjct: 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADGK 1016
Query: 713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
T + + +++WN + L AH + V + + S S D VK+W
Sbjct: 1017 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ-DSRLLSWSFDGTVKVW 1070
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
++ + A V+ D +LL + D +W + ++ H + S
Sbjct: 1036 DYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1094
Query: 607 PSLSRLATSSADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
++ +++SAD+T ++W D +P + L+ GH+ V F LL + D+N E
Sbjct: 1095 SDATKFSSTSADKTAKIWSFDLLSPLHELK---GHNGCVRCSAFSLDG-ILLATGDDNGE 1150
Query: 665 IRYWSINNG----SCAGV 678
IR W++++G SCA +
Sbjct: 1151 IRIWNVSDGQLLHSCAPI 1168
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 21/175 (12%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
HT + FS R+A+ AD+T++V+ E + L H V+ F S +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAF-SSDDSY 671
Query: 656 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIEN--YISILDVE 712
+ +C + +++ W G + S F + +L A N ++ + D+
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
+ CR T+ H V+ S + ++AS S D +++W
Sbjct: 732 QKECR----------------NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 18/111 (16%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT------DVRFSPS 608
T+ V C FSPD +LLA+ D LW S + ++ +++ DV
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV--- 799
Query: 609 LSRLATSSAD---------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
+ + + SAD V ++D TGH +T+ DF P
Sbjct: 800 IVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ + LAT S D +++WD N T GH+ +V F P
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
E LL SC + +R W + + +
Sbjct: 763 E-LLASCSADGTLRLWDVRSAN 783
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 519 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS--PDGKLLATGGHD 576
+S+++ AD + ++ SA T+ E + +V CHF+ + LLATG +D
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 729
Query: 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
LW ++T+ HT + RFSP LA+ SAD T+R+WD + +
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS S
Sbjct: 620 PHTDAVYHAC-FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSI 670
+AT SAD+ V++WD+ + T+ HS V F + S LL + N+ ++ W +
Sbjct: 679 IATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 671 NNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713
N C +F + RF P + + + + + + DV +
Sbjct: 738 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 28/235 (11%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 616 SADRTVRVWDT----ENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
S D+T+RVW+T +N L+ F + T V+++D + L +I
Sbjct: 908 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD---NIRGLQLIAGKTGQID 964
Query: 667 YWSINNGSCAGV--------FKCQSGATQMRFQPRLGRILAAAIENYISILDVE------ 712
Y SC + F + GA ++ P R+ ++ + + ++ ++
Sbjct: 965 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADGK 1023
Query: 713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
T + + +++WN + L AH + V + + S S D VK+W
Sbjct: 1024 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ-DSRLLSWSFDGTVKVW 1077
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
++ + A V+ D +LL + D +W + ++ H + S
Sbjct: 1043 DYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS 1101
Query: 607 PSLSRLATSSADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
++ +++SAD+T ++W D +P + L+ GH+ V F LL + D+N E
Sbjct: 1102 SDATKFSSTSADKTAKIWSFDLLSPLHELK---GHNGCVRCSAFSLDG-ILLATGDDNGE 1157
Query: 665 IRYWSINNG----SCAGV 678
IR W++++G SCA +
Sbjct: 1158 IRIWNVSDGQLLHSCAPI 1175
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 19/174 (10%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
HT + FS R+A+ AD+T++V+ E + L H V+ F S +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAF-SSDDSY 678
Query: 656 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENYISILDVETQ 714
+ +C + +++ W G + S F + +L A N
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF-------- 730
Query: 715 VCRLKLQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
L+LW++ + + T+ H V+ S + ++AS S D +++W
Sbjct: 731 -------FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 18/111 (16%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT------DVRFSPS 608
T+ V C FSPD +LLA+ D LW S + ++ +++ DV
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV--- 806
Query: 609 LSRLATSSAD---------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
+ + + SAD V ++D TGH +T+ DF P
Sbjct: 807 IVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 857
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IE 703
+ P + ++L + S+ IR W++ +G+C S + + P +++ +
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 354
Query: 704 NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 763
N + I T K L H V SL S VASA+ D+
Sbjct: 355 NQLVIWKYPTMA----------------KVAELKGHTSRVLSLTMSPDGATVASAAADET 398
Query: 764 VKIWK 768
+++W+
Sbjct: 399 LRLWR 403
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLS 610
+ +V ++PDG+ LA+GG+D +W + + T +H + V + P S
Sbjct: 241 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 300
Query: 611 R-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
LAT ++DR +R+W+ + L HS V S+ + P ++L+
Sbjct: 301 NVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKELI 347
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 332 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 391
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 392 SAAADETLRLW 402
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D + +AT DKK +W + + + T +
Sbjct: 643 KTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYD 702
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ S LAT S+D +++WD N T GH+ +V F P
Sbjct: 703 EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPD- 760
Query: 653 EDLLCSCDNNSEIRYW 668
+ LL SC + ++ W
Sbjct: 761 DKLLASCSADGTLKLW 776
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 28/235 (11%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW T+S + + H W+ V FSP S TS
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 616 SADRTVRVWDT----ENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
S D+T+R+W+T +N L+ F + V+++D H + L+ +I
Sbjct: 907 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVD-HIRRLQLING--RTGQID 963
Query: 667 YWSINNGSCAGV--------FKCQSGATQMRFQPRLGRILAAAIENYISILDVE------ 712
Y + SC + F ++GA ++ + RI + ++ ++ ++
Sbjct: 964 YLTEAQVSCCCLSPHLQYIAFGDENGAIEI-LELVNNRIFQSRFQHKKTVWHIQFTADEK 1022
Query: 713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
T + +++WN +K + L H + V N + S S D VK+W
Sbjct: 1023 TLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLK-NSRLLSWSFDGTVKVW 1076
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 555 TSKVESCHF--SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
+ +V CHF S LLATG D LW ++T+ HT + RFSP L
Sbjct: 705 SEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLL 764
Query: 613 ATSSADRTVRVWD 625
A+ SAD T+++WD
Sbjct: 765 ASCSADGTLKLWD 777
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS
Sbjct: 619 PHTDAVYHAC-FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSI 670
+AT S D+ V++W++ + + T+ HS V F S LL + ++ ++ W +
Sbjct: 678 IATCSVDKKVKIWNSMTGEL-VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 671 NNGSCAG-VFKCQSGATQMRFQP 692
N C +F + RF P
Sbjct: 737 NQKECRNTMFGHTNSVNHCRFSP 759
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 610 SRLATSSADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
++ +++SAD+T ++W D P + LR GH+ V F LL + D+N EIR
Sbjct: 1104 TKFSSTSADKTAKIWSFDLLLPLHELR---GHNGCVRCSAF-SVDSTLLATGDDNGEIRI 1159
Query: 668 WSINNG 673
W+++NG
Sbjct: 1160 WNVSNG 1165
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 6/139 (4%)
Query: 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608
Q+ + ++V C SP + +A G + + + + + +H + + ++F+
Sbjct: 961 QIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTAD 1020
Query: 609 LSRLATSSADRTVRVWDTE-NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
L +SS D ++VW+ + + LR GH TV DF K L S + ++
Sbjct: 1021 EKTLISSSDDAEIQVWNWQLDKCIFLR---GHQETVK--DFRLLKNSRLLSWSFDGTVKV 1075
Query: 668 WSINNGSCAGVFKCQSGAT 686
W+I G+ F C G
Sbjct: 1076 WNIITGNKEKDFVCHQGTV 1094
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V SC S D ++ DK A +W + L H + FS + LAT
Sbjct: 1094 VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD 1153
Query: 618 DRTVRVWDTENPD-------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
+ +R+W+ N + S H V L F P + L+ + I++W++
Sbjct: 1154 NGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA---GGYIKWWNV 1210
Query: 671 NNGSCAGVF 679
G + F
Sbjct: 1211 VTGESSQTF 1219
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
T K L + AH+ V A ST + +A+ S DK VKIW
Sbjct: 652 TGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IE 703
+ P + ++L + S+ IR W++ +G+C S + + P +++ +
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 343
Query: 704 NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 763
N + I T K L H V SL S VASA+ D+
Sbjct: 344 NQLVIWKYPTMA----------------KVAELKGHTSRVLSLTMSPDGATVASAAADET 387
Query: 764 VKIWK 768
+++W+
Sbjct: 388 LRLWR 392
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLS 610
+ +V ++PDG+ LA+GG+D +W + + T +H + V + P S
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 289
Query: 611 R-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
LAT ++DR +R+W+ + L HS V S+ + P ++L+
Sbjct: 290 NVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKELI 336
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 381 SAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705
+ P + ++L + S+ IR W++ +G+C S + + P +++ +
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG--HGF 261
Query: 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 765
+ Q+ K T+ K L H V SL S VASA+ D+ ++
Sbjct: 262 -----AQNQLVIWKYPTMA-------KVAELKGHTSRVLSLTMSPDGATVASAAADETLR 309
Query: 766 IWK 768
+W+
Sbjct: 310 LWR 312
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 545 FTEFQLIPASTSKVESC--HFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQ 598
E + S E C ++PDG+ LA+GG+D +W + + T +H
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197
Query: 599 WITDVRFSPSLSR-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
+ V + P S LAT ++DR +R+W+ + L HS V S+ + P ++L
Sbjct: 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKEL 255
Query: 656 L 656
+
Sbjct: 256 I 256
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 301 SAAADETLRLW 311
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 3/155 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FSPD + LATG H K ++ ES + +L+ ++I + +SP LA+ + D +
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 682
++D L T GH+ + SL F P + LL + ++ I+ + + + + AG
Sbjct: 190 IFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 683 -SGATQMRFQPRLGRILAAAIENYISILDVETQVC 716
S + F P ++++ + + + DV T+ C
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
+ S +SPDGK LA+G D ++ + + TLE H I + FSP L T+S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D ++++D ++ + + T +GH++ V+++ F P + S + S W + +C
Sbjct: 227 DGYIKIYDVQHANLA-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV-WDVGTRTCVH 284
Query: 678 -VFKCQSGATQMRFQPRLGRILAAAIENYISILD 710
F Q +++ +I++ + I I D
Sbjct: 285 TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 31/197 (15%)
Query: 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637
K W E ++ +LE H + V S +L A+SS D +R+WD EN +++
Sbjct: 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-QIKSID 119
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL--- 694
+L F P + L + + ++ + + +G K S T+ +F +
Sbjct: 120 AGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGK-----KEYSLDTRGKFILSIAYS 173
Query: 695 --GRILAA-AIENYISILDVETQVCRLKLQTLELWNMTENKTL-TLSAHDKLVSSLAAST 750
G+ LA+ AI+ I+I D+ T K L TL H + SL S
Sbjct: 174 PDGKYLASGAIDGIINIFDIAT-----------------GKLLHTLEGHAMPIRSLTFSP 216
Query: 751 VNGMVASASHDKCVKIW 767
+ ++ +AS D +KI+
Sbjct: 217 DSQLLVTASDDGYIKIY 233
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 36/258 (13%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 96 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 155
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 156 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 212
Query: 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ--- 714
++ + W + G C F +S + F P + + + D+
Sbjct: 213 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 272
Query: 715 --------VC-----------RLKLQTLELWN------MTENKTLTLSAHDKLVSSLAAS 749
+C RL L + +N + ++ L+ HD VS L +
Sbjct: 273 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 332
Query: 750 TVNGMVASASHDKCVKIW 767
VA+ S D +KIW
Sbjct: 333 DDGMAVATGSWDSFLKIW 350
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 36/258 (13%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ--- 714
++ + W + G C F +S + F P + + + D+
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 715 --------VC-----------RLKLQTLELWN------MTENKTLTLSAHDKLVSSLAAS 749
+C RL L + +N + ++ L+ HD VS L +
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 750 TVNGMVASASHDKCVKIW 767
VA+ S D +KIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 36/258 (13%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ--- 714
++ + W + G C F +S + F P + + + D+
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 715 --------VC-----------RLKLQTLELWN------MTENKTLTLSAHDKLVSSLAAS 749
+C RL L + +N + ++ L+ HD VS L +
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 750 TVNGMVASASHDKCVKIW 767
VA+ S D +KIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 36/258 (13%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ--- 714
++ + W + G C F +S + F P + + + D+
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 715 --------VC-----------RLKLQTLELWN------MTENKTLTLSAHDKLVSSLAAS 749
+C RL L + +N + ++ L+ HD VS L +
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 750 TVNGMVASASHDKCVKIW 767
VA+ S D +KIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 36/258 (13%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P L S
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVS 201
Query: 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ--- 714
++ + W + G C F +S + F P + + + D+
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 715 --------VC-----------RLKLQTLELWN------MTENKTLTLSAHDKLVSSLAAS 749
+C RL L + +N + ++ L+ HD VS L +
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 750 TVNGMVASASHDKCVKIW 767
VA+ S D +KIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 38/244 (15%)
Query: 502 LTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
LT + FV D +L +N + S D+ R ++ G T+ F S+V S
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSS-----WDKTLRLWDLRTGTTYKRF---VGHQSEVYS 123
Query: 561 CHFSPDGKLLATGGHDKKAVLW-----CTESFTVKSTLEEHTQWITDVRFSPSLS----- 610
FSPD + + + G +++ LW C S K E H+ W++ VR+SP +
Sbjct: 124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPIMKSANKV 180
Query: 611 -----RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
A+ D ++VW+T ++ +R TF H + V L P+ + + + + +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKK 236
Query: 665 IRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLK 719
+ W I N + F S Q+ F P+L + +A + + I ++ TQ VC ++
Sbjct: 237 LLIWDILNLTYPQREFDAGSTINQIAFNPKL-QWVAVGTDQGVKIFNLMTQSKAPVCTIE 295
Query: 720 LQTL 723
+ +
Sbjct: 296 AEPI 299
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 21/213 (9%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTV-KSTLEEHTQWITDVRFSPSLSRLATSSAD 618
D +L +G DK ++W F + L H +++D+ S +SS D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--- 675
+T+R+WD + + F GH + V S+ F P +L S EI+ W+I G C
Sbjct: 98 KTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI-LGECKFS 154
Query: 676 -AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL 734
A + +R+ P + A ++ + RLK +WN
Sbjct: 155 SAEKENHSDWVSCVRYSPIMKS--ANKVQPFAPYFASVGWDGRLK-----VWNTNFQIRY 207
Query: 735 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
T AH+ V+ L+ S +A+ DK + IW
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
P + + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 569 LLATGGHDKKAVLWCTESFTVKST---LEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 683
D N L TF H + + + P E +L S + + W ++ G +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQTLELWNMTEN 731
G ++ F + A I ++ + +C + + +++W M EN
Sbjct: 364 GPPELLF---IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 611 RLATSSADRTVRVWDTENPDYSLRT------FTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
L ++S D TV +WD + FTGHS V + +H E L S ++ +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 665 IRYWSINNGSCAGVFKCQSGATQ----MRFQPRLGRILA-AAIENYISILDVETQVCRLK 719
+ W + + + T + F P ILA + + +++ D+ +LK
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLK 311
Query: 720 LQTLE 724
L T E
Sbjct: 312 LHTFE 316
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 19/220 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSR 611
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+ + D+ V+VW+ N L+T GH+ + ++ P L S + + W
Sbjct: 186 PIIVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 669 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNM 728
+N G + F P L AA I I D+E ++ +L+
Sbjct: 243 DLNEGKHLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELK------- 294
Query: 729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
E + + A +SLA S + + D V++W+
Sbjct: 295 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
S DG+ +G D LW + T HT+ + V FS ++ + S D+T++
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINN 672
+W+T HS V + F P S ++ SC + ++ W++ N
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 565 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
PD ++ + DK ++W T + L H+ +++DV S + S D
Sbjct: 51 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
T+R+WD + R F GH+ V+S+ F ++ S + I+ W+ G C
Sbjct: 109 TLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTV 165
Query: 680 KCQS---GATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 719
+ +S + +RF P I++ + + + ++ C+LK
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLK 208
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 722 TLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
TL LW++T T H K V S+A S+ N + S S DK +K+W
Sbjct: 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 728 MTENKTL--TLSAHDKLVSSLAAS-TVNGMVASASHDKCVKIWK 768
MTE TL TL H+ V+ +A + M+ SAS DK + +WK
Sbjct: 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK 67
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 19/220 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSR 611
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+ + D+ V+VW+ N L+T GH+ + ++ P L S + + W
Sbjct: 163 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 669 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNM 728
+N G + F P L AA I I D+E ++ +L+
Sbjct: 220 DLNEGKHLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELK------- 271
Query: 729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
E + + A +SLA S + + D V++W+
Sbjct: 272 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
S DG+ +G D LW + T HT+ + V FS ++ + S D+T++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINN 672
+W+T HS V + F P S ++ SC + ++ W++ N
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 565 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
PD ++ + DK ++W T + L H+ +++DV S + S D
Sbjct: 28 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
T+R+WD + R F GH+ V+S+ F ++ S + I+ W+ G C
Sbjct: 86 TLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTV 142
Query: 680 KCQS---GATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 719
+ +S + +RF P I++ + + + ++ C+LK
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLK 185
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 722 TLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
TL LW++T T H K V S+A S+ N + S S DK +K+W
Sbjct: 86 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 728 MTENKTL--TLSAHDKLVSSLAAS-TVNGMVASASHDKCVKIWK 768
MTE TL TL H+ V+ +A + M+ SAS DK + +WK
Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK 44
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
P + + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYW 668
++CS ++ + W
Sbjct: 389 PWVICSVSEDNIXQIW 404
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKST---LEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K +W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 683
D N L TF H + + + P E +L S + + W ++ G +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363
Query: 684 GATQMRF 690
G ++ F
Sbjct: 364 GPPELLF 370
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 611 RLATSSADRTVRVWDTENPDYSLRT------FTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
L ++S D TV +WD + FTGHS V + +H E L S ++ +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 665 IRYWSINNGSCAGVFKCQSGATQ----MRFQPRLGRILA-AAIENYISILDVETQVCRLK 719
+ W + + + T + F P ILA + + +++ D+ +LK
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--LKLK 311
Query: 720 LQTLE 724
L T E
Sbjct: 312 LHTFE 316
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 397 IICSVSEDNIMQVWQM 412
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 683
D N L +F H + + + P E +L S + + W ++ G +
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 369
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQTLELWNMTEN 731
G ++ F + A I ++ + +C + + +++W M EN
Sbjct: 370 GPPELLF---IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 228 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 287
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINN 672
F+P E +L + + + W + N
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLRN 313
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 395 IICSVSEDNIMQVWQM 410
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 683
D N L +F H + + + P E +L S + + W ++ G +
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 367
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQTLELWNMTEN 731
G ++ F + A I ++ + +C + + +++W M EN
Sbjct: 368 GPPELLF---IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 226 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 285
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINN 672
F+P E +L + + + W + N
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRN 311
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 393 IICSVSEDNIMQVWQM 408
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 683
D N L +F H + + + P E +L S + + W ++ G +
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQTLELWNMTEN 731
G ++ F + A I ++ + +C + + +++W M EN
Sbjct: 366 GPPELLF---IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINN 672
F+P E +L + + + W + N
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRN 309
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 608 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 389 VICSVSEDNIMQVWQM 404
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T S +++ HT + + F+P S LAT SAD+TV +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS 683
D N L +F H + + + P E +L S + + W ++ G +
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAED 361
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQTLELWNMTEN 731
G ++ F + A I ++ + +C + + +++W M EN
Sbjct: 362 GPPELLF---IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT + + S + H+ V L
Sbjct: 220 KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCL 279
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINN 672
F+P E +L + + + W + N
Sbjct: 280 SFNPYSEFILATGSADKTVALWDLRN 305
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
LL + DK + W + F V + + H+ + D + + ++S D+T+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
WD + R F GH + VMS+D K ++ S + I+ W+I A +
Sbjct: 92 WDVATGETYQR-FVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
+Q+R P A ++ ++I+ + ++ WN+ + + H+
Sbjct: 150 WVSQVRVVPN-----EKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGHNSN 198
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
+++L AS ++ASA D + +W
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLW 223
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 32/196 (16%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697
GHS V L S + +R W + +G T RF +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDV-----------ATGETYQRFVGHKSDV 110
Query: 698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSL------AASTV 751
++ I+ S++ + + +T+++W + TL H+ VS + A
Sbjct: 111 MSVDIDKKASMI-----ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 752 NGMVASASHDKCVKIW 767
+ + SA +DK VK W
Sbjct: 166 SVTIISAGNDKMVKAW 181
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 32/211 (15%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 673 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK 732
F + G ++A+A ++ + LWN+ K
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKD----------------GEIMLWNLAAKK 229
Query: 733 TL-TLSAHDKLVS--------SLAASTVNGM 754
+ TLSA D++ S LAA+T G+
Sbjct: 230 AMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYW 668
+ L +N IR W
Sbjct: 296 ADGQTLFAGYTDNV-IRVW 313
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 30/183 (16%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
LE H+ +++DV S + + ++S D ++R+W+ +N + F GH+ V+S+ F P
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDN 121
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPRLGR--ILAAAIENY 705
++ +N+ +R W++ G C + GA + +RF P L I++ +N
Sbjct: 122 RQIVSGGRDNA-LRVWNV-KGEC--MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 706 ISILDVETQVCRLKLQTLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 764
+ + W++ + +T L H V+S+ S + AS+ D
Sbjct: 178 VKV-----------------WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVA 220
Query: 765 KIW 767
++W
Sbjct: 221 RLW 223
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 553 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
A T V FSP D ++ +GG D +W + + + L+ HT ++T V SP S
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 611 RLATSSADRTVRVWD 625
A+S D R+WD
Sbjct: 210 LCASSDKDGVARLWD 224
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
S +G + D LW ++ + HT+ + V FSP ++ + D +R
Sbjct: 75 LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALR 134
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNG 673
VW+ + + H+ V + F PS + ++ S ++ ++ W + G
Sbjct: 135 VWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG 186
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
LL + DK + W + F V + + H+ + D + + ++S D+T+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
WD + R F GH + VMS+D K ++ S + I+ W+I A +
Sbjct: 92 WDVATGETYQR-FVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
+Q+R P A ++ ++I+ + ++ WN+ + + H+
Sbjct: 150 WVSQVRVVPN-----EKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGHNSN 198
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
+++L AS ++ASA D + +W
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLW 223
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 32/196 (16%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697
GHS V L S + +R W + +G T RF +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDV-----------ATGETYQRFVGHKSDV 110
Query: 698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSL------AASTV 751
++ I+ S++ + + +T+++W + TL H+ VS + A
Sbjct: 111 MSVDIDKKASMI-----ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 752 NGMVASASHDKCVKIW 767
+ + SA +DK VK W
Sbjct: 166 SVTIISAGNDKMVKAW 181
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 32/211 (15%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 673 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK 732
F + G ++A+A ++ + LWN+ K
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKD----------------GEIMLWNLAAKK 229
Query: 733 TL-TLSAHDKLVS--------SLAASTVNGM 754
+ TLSA D++ S LAA+T G+
Sbjct: 230 AMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
LL + DK + W + F V + + H+ + D + + ++S D+T+R+
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
WD + R F GH + VMS+D K ++ S + I+ W+I A +
Sbjct: 86 WDVATGETYQR-FVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 143
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
+Q+R P A ++ ++I+ + ++ WN+ + + H+
Sbjct: 144 WVSQVRVVPN-----EKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGHNSN 192
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
+++L AS ++ASA D + +W
Sbjct: 193 INTLTASPDGTLIASAGKDGEIMLW 217
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 32/211 (15%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 122 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 179
Query: 673 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK 732
F + G ++A+A ++ + LWN+ K
Sbjct: 180 FQIEADFIGHNSNINTLTASPDGTLIASAGKD----------------GEIMLWNLAAKK 223
Query: 733 TL-TLSAHDKLVS--------SLAASTVNGM 754
+ TLSA D++ S LAA+T G+
Sbjct: 224 AMYTLSAQDEVFSLAFSPNRYWLAAATATGI 254
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 587 FTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFTGH 639
++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F GH
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 58
Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
S V L S + +R W + +G T RF +++
Sbjct: 59 SHIVQDCTLTADGAYAL-SASWDKTLRLWDV-----------ATGETYQRFVGHKSDVMS 106
Query: 700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSL------AASTVNG 753
I+ S++ + + +T+++W + TL H+ VS + A +
Sbjct: 107 VDIDKKASMI-----ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV 161
Query: 754 MVASASHDKCVKIW 767
+ SA +DK VK W
Sbjct: 162 TIISAGNDKMVKAW 175
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 232
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 233 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 289
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 290 ADGQTLFAGYTDNV-IRVWQV 309
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
LL + DK + W + F V + + H+ + D + + ++S D+T+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
WD + R F GH + VMS+D K ++ S + I+ W+I A +
Sbjct: 92 WDVATGETYQR-FVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
+Q+R P A ++ ++I+ + ++ WN+ + + H+
Sbjct: 150 WVSQVRVVPN-----EKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGHNSN 198
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
+++L AS ++ASA D + +W
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLW 223
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 32/196 (16%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697
GHS V L S + +R W + +G T RF +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDV-----------ATGETYQRFVGHKSDV 110
Query: 698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSL------AASTV 751
++ I+ S++ + + +T+++W + TL H+ VS + A
Sbjct: 111 MSVDIDKKASMI-----ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 752 NGMVASASHDKCVKIW 767
+ + SA +DK VK W
Sbjct: 166 SVTIISAGNDKMVKAW 181
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 32/211 (15%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 673 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK 732
F + G ++A+A ++ + LWN+ K
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKD----------------GEIMLWNLAAKK 229
Query: 733 TL-TLSAHDKLVS--------SLAASTVNGM 754
+ TLSA D++ S LAA+T G+
Sbjct: 230 AMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSAAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
LL + DK + W + F V + + H+ + D + + ++S D+T+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
WD + R F GH + VMS+D K ++ S + I+ W+I A +
Sbjct: 92 WDVATGETYQR-FVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
+Q+R P A ++ ++I+ + ++ WN+ + + H+
Sbjct: 150 WVSQVRVVPN-----EKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGHNSN 198
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
+++L AS ++ASA D + +W
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLW 223
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 32/196 (16%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697
GHS V L S + +R W + +G T RF +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDV-----------ATGETYQRFVGHKSDV 110
Query: 698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSL------AASTV 751
++ I+ S++ + + +T+++W + TL H+ VS + A
Sbjct: 111 MSVDIDKKASMI-----ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 752 NGMVASASHDKCVKIW 767
+ + SA +DK VK W
Sbjct: 166 SVTIISAGNDKMVKAW 181
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 32/211 (15%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 673 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK 732
F + G ++A+A ++ + LWN+ K
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKD----------------GEIMLWNLAAKK 229
Query: 733 TL-TLSAHDKLVS--------SLAASTVNGM 754
+ TLSA D++ S LAA+T G+
Sbjct: 230 AMYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 14/225 (6%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTL 723
++ WS+ G + F G+ +Y + D + T+
Sbjct: 164 TVKVWSL-------------GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 724 ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
++W+ T++ TL H VS ++ S S D +KIW
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP- 692
+TF+ S V +DFHP++ +L + + + W+ + + + Q+ P
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVEIWNYET-------QVEVRSIQVTETPV 58
Query: 693 RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN 752
R G+ +A +N+I + + ++ T E K + AH + S+A
Sbjct: 59 RAGKFIAR--KNWIIVGSDDFRIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTK 109
Query: 753 GMVASASHDKCVKIW 767
V S S D VK+W
Sbjct: 110 PYVLSGSDDLTVKLW 124
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 14/225 (6%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTL 723
++ WS+ G + F G+ +Y + D + T+
Sbjct: 164 TVKVWSL-------------GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 724 ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
++W+ T++ TL H VS ++ S S D +KIW
Sbjct: 211 KIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP- 692
+TF+ S V +DFHP++ +L + + + W+ + + + Q+ P
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYET-------QVEVRSIQVTETPV 58
Query: 693 RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN 752
R G+ +A +N+I + + ++ T E K + AH + S+A
Sbjct: 59 RAGKFIAR--KNWIIVGSDDFRIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTK 109
Query: 753 GMVASASHDKCVKIW 767
V S S D VK+W
Sbjct: 110 PYVLSGSDDLTVKLW 124
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
E H +I + P+ + + S D TV++W+ EN +TF GH VM + F+P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712
S + ++ WS+ G + F G+ +Y + D
Sbjct: 153 PSTFASGCLDRTVKVWSL-------------GQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 713 TQVCRLKLQTLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
+ T+++W+ T++ TL H VS ++ S S D +KIW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP- 692
+TF+ S V +DFHP++ +L + + + W+ + + + Q+ P
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYET-------QVEVRSIQVTETPV 58
Query: 693 RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN 752
R G+ +A +N+I + + ++ T E K + AH + S+A
Sbjct: 59 RAGKFIAR--KNWIIVGSDDFRIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTK 109
Query: 753 GMVASASHDKCVKIW 767
V S S D VK+W
Sbjct: 110 PYVLSGSDDLTVKLW 124
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
E H +I + P+ + + S D TV++W+ EN +TF GH VM + F+P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712
S + ++ WS+ G + F G+ +Y + D
Sbjct: 153 PSTFASGCLDRTVKVWSL-------------GQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 713 TQVCRLKLQTLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
+ T+++W+ T++ TL H VS ++ S S D +KIW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP- 692
+TF+ S V +DFHP++ +L + + + W+ + + + Q+ P
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYET-------QVEVRSIQVTETPV 58
Query: 693 RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN 752
R G+ +A +N+I + + ++ T E K + AH + S+A
Sbjct: 59 RAGKFIAR--KNWIIVGSDDFRIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTK 109
Query: 753 GMVASASHDKCVKIW 767
V S S D VK+W
Sbjct: 110 PYVLSGSDDLTVKLW 124
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
WD EN + + T GH+ V L + L S + IR W N+ S
Sbjct: 337 WDLENGEL-MYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
L +++AD ++R WD DYS R F+ H T + ++ +++L S N + ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 670 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 710
+ +G A + K + F+ G+ L AA+E +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 590 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
++TL H T IT ++F + + T + D+ +RV+D+ N + L+ +GH V +L +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+ +L S + +R W I G C VF+
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFE 200
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 8/163 (4%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSI 670
L + S DRTVRVWD + + F GH++TV LD K + + ++ + W +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCT-HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 671 NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-----QTLEL 725
S + + P + +++ + + + + TL +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 726 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
W++ + K L LS H + S SAS D ++IW
Sbjct: 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 19/205 (9%)
Query: 569 LLATGGHDKKAVLWCT----ESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
LL + DK + W + F V + + H+ + D + + ++S D+T+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683
WD + R F GH + V S+D K + S + I+ W+I A +
Sbjct: 92 WDVATGETYQR-FVGHKSDVXSVDI-DKKASXIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT-LTLSAHDKL 742
+Q+R P A ++ ++I+ + ++ WN+ + + H+
Sbjct: 150 WVSQVRVVPN-----EKADDDSVTIISAGND------KXVKAWNLNQFQIEADFIGHNSN 198
Query: 743 VSSLAASTVNGMVASASHDKCVKIW 767
+++L AS ++ASA D + +W
Sbjct: 199 INTLTASPDGTLIASAGKDGEIXLW 223
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 32/211 (15%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 673 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK 732
F + G ++A+A ++ + LWN+ K
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKD----------------GEIXLWNLAAKK 229
Query: 733 T-LTLSAHDKLVS--------SLAASTVNGM 754
TLSA D++ S LAA+T G+
Sbjct: 230 AXYTLSAQDEVFSLAFSPNRYWLAAATATGI 260
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 32/196 (16%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697
GHS V L S + +R W + +G T RF +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDV-----------ATGETYQRFVGHKSDV 110
Query: 698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSL------AASTV 751
+ I+ S + + + +T+++W + TL H+ VS + A
Sbjct: 111 XSVDIDKKASXI-----ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 752 NGMVASASHDKCVKIW 767
+ + SA +DK VK W
Sbjct: 166 SVTIISAGNDKXVKAW 181
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 564 SPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSPSL---SRLATSS 616
+ + + TGG D +W +++ ++STLE H+ W+ DV +SP++ S LA+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 617 ADRTVRVWDTEN 628
DRT +W +N
Sbjct: 227 QDRTCIIWTQDN 238
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNGSCAGV 678
+L SC + ++ W NG + +
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQI 92
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 70 TILASCSYDGKVLIWKEENG 89
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 217 TVLLRSYLASVSQDRTCIIWTQDN 240
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 68 TILASCSYDGKVLIWKEENG 87
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDN 238
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
L H + +T V+++ L + S D + VW + N + L T GH+ T+ S+D
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-RLGTLDGHTGTIWSIDVDCFT 86
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY------I 706
+ + + S I+ W ++NG C +K ++ F P G A ++N I
Sbjct: 87 KYCVTGSADYS-IKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSI 144
Query: 707 SILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKL-VSSLAASTVNGMVASASH 760
+I ++E T EL ++E + H+ L +++A + G A H
Sbjct: 145 NIYEIERDSA-----THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH 194
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
++ +G LL + D A +W + + TL+ HT I + T SAD +++
Sbjct: 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 623 VWDTEN 628
+WD N
Sbjct: 100 LWDVSN 105
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLW-CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618
+S GK + G D K + + ++ +++ H + I+D++FSP L+ TSS D
Sbjct: 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D R+AT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 68 TILASCSYDGKVMIWKEENG 87
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S +A+ S DRT +W +N
Sbjct: 215 TVLLRSYMASVSQDRTCIIWTQDN 238
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
WD EN + T GH+ V L + L S + IR W N+ S
Sbjct: 337 WDLENGELXY-TLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
L +++AD ++R WD DYS R F+ H T + ++ +++L S N + ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 670 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 710
+ +G A + K + F+ G+ L AA+E +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 590 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
++TL H T IT ++F + + T + D+ +RV+D+ N + L+ +GH V +L +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNY--VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+ +L S + +R W I G C VF+
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFE 200
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 8/163 (4%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSI 670
L + S DRTVRVWD + + F GH++TV LD K + + ++ + W +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCT-HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 671 NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-----QTLEL 725
S + + P + + + + + + + TL +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 726 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
W++ + K L LS H + S SAS D ++IW
Sbjct: 295 WDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 30/224 (13%)
Query: 560 SCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRF-SPSLSRL 612
SC + PD + L TG D+ VLW + S HT + + S + +
Sbjct: 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF 221
Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
+ S D TVR+WD ++RT+ GH + S+ F P + D+ + R + +
Sbjct: 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRT 280
Query: 673 GSCAGVFKCQSG--------ATQMRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQTL 723
G V+ + T + F GR+L A N + D L L TL
Sbjct: 281 GHQLQVYNREPDRNDNELPIVTSVAFSIS-GRLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339
Query: 724 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
+ ++H+ +S L S+ + + S DK +KIW
Sbjct: 340 Q------------NSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+ KV S ++P+ + + D + ++W + ++ H W+ + F+P+ +A
Sbjct: 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125
Query: 615 SSADRTVRVWDTE---NPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
D +++ + D ++ R TGH S + P +E L + + W
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 669 SINNGSCAGVF 679
+ G +F
Sbjct: 186 DVTTGQRISIF 196
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S A+ S DRT +W +N
Sbjct: 215 TVLLRSYXASVSQDRTCIIWTQDN 238
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D R AT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
+L SC + ++ W NG
Sbjct: 68 TILASCSYDGKVXIWKEENG 87
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 86/213 (40%), Gaps = 20/213 (9%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
VE S DG+ +G D + LW + HT+ + V FS ++ ++S
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 618 DRTVRVWDTENP-DYSL-RTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGS 674
DRT+++W+T Y++ GH V + F P+ + + S + ++ W+++N
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL 734
+G G + A+ ++ + + LW++ E K L
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL----------------LWDLAEGKKL 596
Query: 735 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
+ ++ +L S N A+ + +KIW
Sbjct: 597 YSLEANSVIHALCFSP-NRYWLCAATEHGIKIW 628
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 558 VESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
V FSP+ + + DK +W + ++STL HT +++ V SP S A+
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 616 SADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
D V +WD YSL ++ + +L F P++ LC+ + I+ W + +
Sbjct: 580 GKDGVVLLWDLAEGKKLYSLEA----NSVIHALCFSPNRY-WLCAATEHG-IKIWDLESK 633
Query: 674 S 674
S
Sbjct: 634 S 634
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V + SPDG L A+GG D +LW +LE ++ I + FSP+ L
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWLCA 619
Query: 615 SSADRTVRVWDTEN 628
++ + +++WD E+
Sbjct: 620 AT-EHGIKIWDLES 632
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSP 607
T V S ++PDG L A+ G D VL+ T E+ H+ + + +SP
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 608 SLSRLATSSADRTVRVWD 625
+++A++SAD+T+++W+
Sbjct: 250 DGTKIASASADKTIKIWN 267
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
+ S F P + +G D ++ F KST EHT+++ VR++P S A++
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209
Query: 617 ADRTVRVWDTEN-------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
D T+ +++ + D SL+ HS +V L + P + S + I+ W+
Sbjct: 210 GDGTIVLYNGVDGTKTGVFEDDSLKN-VAHSGSVFGLTWSPDGTK-IASASADKTIKIWN 267
Query: 670 I 670
+
Sbjct: 268 V 268
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLW-CTESFTVKST--LEEHTQWITDVRFSPSLSRL 612
+++ S FS +G L +K + + +F + T HT + V +SP RL
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 613 ATSSADRTVRVWDTENP-DYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
AT S D +V VW+ P D+ + H+ ++V S+ + E + S +S I++W++
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW--LNETTIVSAGQDSNIKFWNV 609
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 47/224 (20%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT----FTGHST 641
S T EH+ T + SPS A+ VR+WDT + L+T F+G
Sbjct: 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG--- 104
Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRY-WSINNGSCAGVFKCQSGA-TQMRFQP-RLGRIL 698
V + + + + + + + + G+ G Q+ A + F+P R RI+
Sbjct: 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII 164
Query: 699 AAAIENYISILDVETQVCRLKLQ---------------------------TLELWN---- 727
+ + +N ++I E + K T+ L+N
Sbjct: 165 SGSDDNTVAIF--EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
Query: 728 ----MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767
+ E+ +L AH V L S +ASAS DK +KIW
Sbjct: 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654
EH ++ V S ++ + S D ++VWD L ++ H+ V + P K+
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGA---TQMRFQPRLGRILAAAIEN-YISILD 710
+ SC ++ I W A C + T + + P+ + EN +S++D
Sbjct: 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243
Query: 711 VETQVCRL 718
++ C L
Sbjct: 244 TKSTSCVL 251
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 723 LELWNMTENKTLTLS-----AHDKLVSSLAASTVNGMVASASHDKCVKIW 767
+ELW + EN+TL +S HD +VS+++ + S S D C+K+W
Sbjct: 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 19/179 (10%)
Query: 598 QWITDVRFSPSLS-RLATSSA---DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK 652
Q ++ V + P S R+AT++ D ++ +WD N + L+T GH ++SLD+
Sbjct: 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAA---------- 701
E LL S ++ + W+ + F + + +F P + A A
Sbjct: 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT 334
Query: 702 IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 760
++N + LD + + + + WN N + S V L A T G + A+H
Sbjct: 335 LQNLTNTLDEQETETKQQESETDFWN---NVSREESKEKPSVFHLQAPTWYGEPSPAAH 390
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
+ N S+ F+ HS++V ++ F+ ++++L S NN EI W +N
Sbjct: 98 EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADR 619
CH D LL + G D +LW ES S W +F+P L A +S D
Sbjct: 271 CH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328
Query: 620 TVRV 623
+ V
Sbjct: 329 KIEV 332
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHP 650
+ H IT ++F PS L +SS D +++W D NP RT GH TV +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRATVTDIAIID 191
Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++L S + IR W G+ F
Sbjct: 192 RGRNVL-SASLDGTIRLWECGTGTTIHTF 219
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 613 ATSSADRTVRVWD 625
++S D T+R+W+
Sbjct: 197 LSASLDGTIRLWE 209
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDF-HPSKE 653
H I D + +RLAT S+DR+V+++D N L GH V + + HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 654 DLLCSCDNNSEIRYWSINNGS 674
++L SC + ++ W NG+
Sbjct: 72 NILASCSYDRKVIIWREENGT 92
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 568 KLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSL----SRLATSSADRT 620
K A+GG D LW E + + LE H+ W+ DV ++PS+ S +A+ S D
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 621 VRVWDTEN 628
V +W ++
Sbjct: 240 VFIWTCDD 247
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHP 650
+ H IT ++F PS L +SS D +++W D NP RT GH TV +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRATVTDIAIID 188
Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++L S + IR W G+ F
Sbjct: 189 RGRNVL-SASLDGTIRLWECGTGTTIHTF 216
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 613 ATSSADRTVRVWD 625
++S D T+R+W+
Sbjct: 194 LSASLDGTIRLWE 206
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQW 599
G + + + +V ++PD + T G D+ A +W + T K TL +
Sbjct: 39 GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98
Query: 600 ITDVRFSPSLSRLATSSADRTVRV--WDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLL 656
VR++P+ + A S R + + ++ EN + + +TV+SLD+HP+ L
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158
Query: 657 C-SCDNNSEI 665
SCD I
Sbjct: 159 AGSCDFKCRI 168
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRT 620
++PD + T G D+ A +W + T K TL + VR++P+ + A S R
Sbjct: 60 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 119
Query: 621 VRV--WDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLC-SCDNNSEI 665
+ + ++ EN + + +TV+SLD+HP+ L SCD I
Sbjct: 120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 168
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 78/184 (42%), Gaps = 25/184 (13%)
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFH 649
TL+ H+ + + + +LA+ D V++WD + P + T T H+ V ++ +
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF---TKTNHNAAVKAVAWC 268
Query: 650 PSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 707
P + +LL + + +I +W+ G+ S T + + P I++
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTH------ 322
Query: 708 ILDVETQVCRLKLQTLELWNMTEN---KTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764
L +W+ + + K + + AHD V A S ++++A+ D+ +
Sbjct: 323 ---------GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373
Query: 765 KIWK 768
K W+
Sbjct: 374 KFWR 377
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+S+V + DG LA+GG+D +W S K T H + V + P S L
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276
Query: 615 S---SADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCS---CDNNSEIRY 667
+ + D+ + W N R T + + V SL + P ++++ + DNN I
Sbjct: 277 TGGGTMDKQIHFW---NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI-- 331
Query: 668 WSINNGSCAGVFKCQSGATQMRFQPRL--GRILAAA 701
WS ++ + T++ + GRIL+ A
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 596 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLR--------TFTGHSTTVMSL 646
HT + D+ + P + + +A+ S D TV VW E PD L T GH+ V +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVW--EIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+HP+ +++L S ++ I W + G+
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGTGA 165
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 27/128 (21%)
Query: 561 CHFSPDGKLLA-----TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLAT 614
C S G L TG DK L C HT + D+ + P + + +A+
Sbjct: 51 CEASGGGAFLVLPLGKTGRVDKNVPLVCG-----------HTAPVLDIAWCPHNDNVIAS 99
Query: 615 SSADRTVRVWDTENPDYSLR--------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
S D TV VW E PD L T GH+ V + +HP+ +++L S ++ I
Sbjct: 100 GSEDCTVMVW--EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL 157
Query: 667 YWSINNGS 674
W + G+
Sbjct: 158 VWDVGTGA 165
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 46/193 (23%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SPSLSRLATSSADR 619
C S ++ +G DK A +W S L+ H + D + S S ++ T+SAD+
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLVYN--LQAHNASVWDAKVVSFSENKFLTASADK 165
Query: 620 TVRVW----------------------------------------DTENPDYSLRTFTGH 639
T+++W D D LRT+ GH
Sbjct: 166 TIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDV-LRTYEGH 224
Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 699
+ V + P+ + + SC + +R WS NGS V + + G I+
Sbjct: 225 ESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIV 282
Query: 700 AAIENYISILDVE 712
+ +N + I E
Sbjct: 283 GSSDNLVRIFSQE 295
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 73/213 (34%), Gaps = 21/213 (9%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATS 615
+ SC PDG L GG +W + T +K+ L + SP +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
+D + VWD N +R F GH+ +D L +N+ +R W + G
Sbjct: 160 CSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQ 217
Query: 676 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLT 735
S + + P G LA +E+ +E+ ++ +
Sbjct: 218 LQQHDFTSQIFSLGYCPT-GEWLAVGMES----------------SNVEVLHVNKPDKYQ 260
Query: 736 LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768
L H+ V SL + S D + W+
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 555 TSKVESCH---FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
TS +C+ SPD K+ + D +W + T+ + HT + + S ++
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 612 LATSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
L T D TVR WD E FT + + SL + P+ E L
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWL 239
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 299
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 300 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 331
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 298
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 299 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 298
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 299 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
I+ + F+ + L ++S D T+R+W N + S F GHS +++S + +D + SC
Sbjct: 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASW--VGDDKVISC 306
Query: 660 DNNSEIRYWSI 670
+ +R WS+
Sbjct: 307 SMDGSVRLWSL 317
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 612 LATSSADRTVRVWD---TENPDYSLRTFTGHST----TVMSLDFHPSKEDLLCSCDNNSE 664
+ T S D TV+VWD ++P ++ G + TV + + +E ++C+ +N +
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 665 IRYWSINNGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQ 714
I+ + + N + ++G + F + + +++A ++E + D+ TQ
Sbjct: 192 IKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 624
DG +GG D +W V + H+ + V P + S D + +W
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Query: 625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
DT P + R F T S+ +HP K+D D + +I N
Sbjct: 210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 558 VESCHFSPDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LA 613
V S H SP L+A G K L +S + L+ H Q I V +SP LA
Sbjct: 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203
Query: 614 TSSADRTVRVWDTENPDYSLRTFTGH----STTVMSLD-FHPSKEDLLC---------SC 659
T+SAD V++WD L T H S V S + H K + LC +
Sbjct: 204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263
Query: 660 DNNSEIRYWSINNG 673
++ +R W+ +NG
Sbjct: 264 GTDNRMRLWNSSNG 277
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTVKSTL-------EEHTQWITDVRFSPSLSRL 612
+G+ + +GG D VL+ E+ +T K+ + H + V++ P + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 613 ATSSA-DRTVRVWDTENPDYSLRT--FTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRY 667
TSS+ D+T++VWDT +L+T TV S P +K L+ +++
Sbjct: 115 FTSSSFDKTLKVWDTN----TLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 668 WSINNGSCAGVFKCQSGATQ----MRFQPRLGRILA-AAIENYISILDV 711
+ +GSC+ + + G Q + + PR ILA A+ ++ + + DV
Sbjct: 171 CDLKSGSCSHILQ---GHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 596 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK 652
H +T F+P L ATSS D TV++WD N S H V + F+P+
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 653 EDLLCSCDNNSEIRYWS 669
L + D +EIR +S
Sbjct: 262 STKLLTTDQRNEIRVYS 278
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 596 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK 652
H +T F+P L ATSS D TV++WD N S H V + F+P+
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 653 EDLLCSCDNNSEIRYWS 669
L + D +EIR +S
Sbjct: 263 STKLLTTDQRNEIRVYS 279
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 102 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 149
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 143 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 190
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 154
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+AT D + +WD + H + + FHPS + L +C + + +W
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 556 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SR 611
S V FSPD G+ + T G D+K + +S +E+ + + F+ S +
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 612 LATSSADRTVRVWDT 626
AT AD T+RVWD
Sbjct: 267 FATVGADATIRVWDV 281
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 556 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SR 611
S V FSPD G+ + T G D+K + +S +E+ + + F+ S +
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 612 LATSSADRTVRVWDT 626
AT AD T+RVWD
Sbjct: 267 FATVGADATIRVWDV 281
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 600 ITDVRFSPSLSRLAT---SSADRTVRVWDTEN---------PDYSLRTFTG---HSTTVM 644
I V+FSP S LA S++ + +++TE P +S + G HS+ VM
Sbjct: 246 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 305
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSI 670
SL F+ S E LCS + ++R+W +
Sbjct: 306 SLSFNDSGE-TLCSAGWDGKLRFWDV 330
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAV----LWCTE------SFTV-----KSTLEE--H 596
+++ + S FSP G LLA HD + L+ TE S +V +++L E H
Sbjct: 242 NSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 300
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
+ W+ + F+ S L ++ D +R WD + +
Sbjct: 301 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 334
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 600 ITDVRFSPSLSRLAT---SSADRTVRVWDTEN---------PDYSLRTFTG---HSTTVM 644
I V+FSP S LA S++ + +++TE P +S + G HS+ VM
Sbjct: 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSI 670
SL F+ S E LCS + ++R+W +
Sbjct: 296 SLSFNDSGE-TLCSAGWDGKLRFWDV 320
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAV----LWCTE------SFTV-----KSTLEE--H 596
+++ + S FSP G LLA HD + L+ TE S +V +++L E H
Sbjct: 232 NSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 290
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
+ W+ + F+ S L ++ D +R WD + +
Sbjct: 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 601 TDVRFSPSLSRLATSSADRTVRV---------WDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T VR+SP+ + A S R + V W +++ LR+ T++SLD+HP+
Sbjct: 104 TFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS------TILSLDWHPN 157
Query: 652 KEDLLCSC 659
L C
Sbjct: 158 NVLLAAGC 165
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 563 FSPD---GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
FSP G L G W + T+ + HT + DV +S S++ T+S
Sbjct: 47 FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106
Query: 618 DRTVRVWD 625
D+T ++WD
Sbjct: 107 DKTAKMWD 114
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 549 QLIPAS----TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604
Q IP + T V +S DG + T DK A +W S + +H + +
Sbjct: 76 QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQAIQIAQHDAPVKTIH 134
Query: 605 F--SPSLSRLATSSADRTVRVWDTE 627
+ +P+ S + T S D+T++ WDT
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTR 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,016,968
Number of Sequences: 62578
Number of extensions: 680631
Number of successful extensions: 1918
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 395
length of query: 768
length of database: 14,973,337
effective HSP length: 106
effective length of query: 662
effective length of database: 8,340,069
effective search space: 5521125678
effective search space used: 5521125678
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)