Query 004207
Match_columns 768
No_of_seqs 828 out of 4490
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 19:23:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 2.8E-35 6.1E-40 309.2 21.1 248 500-768 181-458 (459)
2 KOG0271 Notchless-like WD40 re 100.0 1.2E-33 2.6E-38 293.2 22.3 253 494-768 115-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 2.5E-32 5.3E-37 283.5 21.3 222 546-768 106-395 (480)
4 KOG0263 Transcription initiati 100.0 6.5E-32 1.4E-36 303.0 23.3 252 496-768 380-647 (707)
5 KOG0286 G-protein beta subunit 100.0 2.2E-30 4.8E-35 261.6 29.2 263 473-768 68-343 (343)
6 KOG0279 G protein beta subunit 100.0 2E-30 4.3E-35 260.7 28.7 267 472-768 28-311 (315)
7 KOG0284 Polyadenylation factor 100.0 7.7E-30 1.7E-34 267.2 14.8 245 502-768 104-378 (464)
8 KOG0279 G protein beta subunit 100.0 4E-28 8.7E-33 244.2 25.0 231 505-768 27-260 (315)
9 KOG0266 WD40 repeat-containing 100.0 2.4E-27 5.2E-32 269.9 30.3 256 494-768 159-452 (456)
10 KOG0315 G-protein beta subunit 100.0 2.3E-27 4.9E-32 235.2 25.6 241 505-768 9-286 (311)
11 KOG0272 U4/U6 small nuclear ri 100.0 1E-28 2.2E-33 260.0 16.9 215 552-768 172-416 (459)
12 KOG0295 WD40 repeat-containing 100.0 2.3E-27 5.1E-32 245.8 22.1 261 473-768 121-404 (406)
13 KOG0285 Pleiotropic regulator 100.0 1.8E-27 3.9E-32 245.6 20.7 223 543-768 139-387 (460)
14 KOG0263 Transcription initiati 100.0 4E-27 8.6E-32 264.6 22.9 244 494-758 451-703 (707)
15 KOG0286 G-protein beta subunit 100.0 3E-26 6.5E-31 231.9 26.9 229 505-768 66-301 (343)
16 cd00200 WD40 WD40 domain, foun 100.0 1.6E-25 3.6E-30 231.1 32.9 245 503-768 18-289 (289)
17 KOG0645 WD40 repeat protein [G 100.0 3.8E-26 8.3E-31 229.1 26.6 262 475-768 30-309 (312)
18 KOG0273 Beta-transducin family 100.0 2.1E-26 4.7E-31 245.1 26.2 235 481-768 237-521 (524)
19 KOG0293 WD40 repeat-containing 100.0 4.6E-27 9.9E-32 246.4 20.1 257 493-768 223-511 (519)
20 KOG0285 Pleiotropic regulator 99.9 1.1E-26 2.3E-31 239.9 22.2 254 493-768 150-437 (460)
21 KOG0273 Beta-transducin family 99.9 1.7E-26 3.6E-31 245.9 24.1 254 506-768 191-480 (524)
22 KOG0265 U5 snRNP-specific prot 99.9 2.6E-26 5.7E-31 233.1 24.2 249 497-766 50-334 (338)
23 KOG0276 Vesicle coat complex C 99.9 1.4E-26 3.1E-31 252.7 23.6 235 499-768 18-255 (794)
24 KOG0266 WD40 repeat-containing 99.9 1.6E-25 3.5E-30 255.0 32.7 206 548-768 151-362 (456)
25 KOG0281 Beta-TrCP (transducin 99.9 4.8E-28 1E-32 248.7 9.9 218 505-768 206-426 (499)
26 KOG0295 WD40 repeat-containing 99.9 6.4E-27 1.4E-31 242.6 17.9 238 494-768 108-362 (406)
27 KOG0318 WD40 repeat stress pro 99.9 1.6E-25 3.5E-30 241.0 27.9 240 509-768 163-558 (603)
28 KOG0319 WD40-repeat-containing 99.9 3E-26 6.5E-31 254.9 22.0 232 504-768 375-617 (775)
29 KOG0265 U5 snRNP-specific prot 99.9 3.3E-26 7.1E-31 232.4 19.0 205 547-768 39-244 (338)
30 KOG0282 mRNA splicing factor [ 99.9 2.5E-26 5.4E-31 245.6 18.8 238 494-768 214-503 (503)
31 KOG0291 WD40-repeat-containing 99.9 1.8E-24 3.9E-29 240.8 32.5 296 471-768 156-506 (893)
32 KOG0645 WD40 repeat protein [G 99.9 1.4E-24 3E-29 217.9 27.4 224 506-768 27-259 (312)
33 KOG0278 Serine/threonine kinas 99.9 4.1E-26 8.8E-31 226.2 16.1 245 502-768 25-295 (334)
34 KOG0318 WD40 repeat stress pro 99.9 1.1E-24 2.4E-29 234.6 28.0 254 492-768 57-348 (603)
35 KOG0283 WD40 repeat-containing 99.9 1.5E-25 3.2E-30 254.0 22.2 220 546-768 257-574 (712)
36 KOG0275 Conserved WD40 repeat- 99.9 1.5E-26 3.3E-31 235.6 12.5 256 500-768 219-507 (508)
37 KOG0315 G-protein beta subunit 99.9 4E-25 8.6E-30 219.3 20.8 199 568-768 11-243 (311)
38 KOG0291 WD40-repeat-containing 99.9 2.4E-24 5.3E-29 239.8 29.2 253 493-768 349-610 (893)
39 KOG0292 Vesicle coat complex C 99.9 2.6E-25 5.6E-30 250.2 21.6 235 499-768 14-278 (1202)
40 KOG0296 Angio-associated migra 99.9 2.6E-24 5.7E-29 223.4 27.3 263 481-768 54-354 (399)
41 KOG0640 mRNA cleavage stimulat 99.9 1.9E-25 4.2E-30 226.9 18.4 268 499-768 117-424 (430)
42 KOG0282 mRNA splicing factor [ 99.9 5.3E-26 1.1E-30 243.1 15.0 221 546-768 205-460 (503)
43 KOG0316 Conserved WD40 repeat- 99.9 1E-24 2.2E-29 214.8 22.2 248 496-767 19-296 (307)
44 PLN00181 protein SPA1-RELATED; 99.9 1.1E-23 2.5E-28 255.8 36.0 235 506-768 545-791 (793)
45 KOG0277 Peroxisomal targeting 99.9 4.7E-25 1E-29 219.4 19.0 232 503-768 70-307 (311)
46 PTZ00421 coronin; Provisional 99.9 8.4E-24 1.8E-28 241.3 31.7 203 550-768 70-288 (493)
47 cd00200 WD40 WD40 domain, foun 99.9 1E-23 2.2E-28 217.7 28.9 218 549-768 3-247 (289)
48 KOG0281 Beta-TrCP (transducin 99.9 8.7E-26 1.9E-30 232.1 13.1 260 471-768 206-475 (499)
49 PLN00181 protein SPA1-RELATED; 99.9 1.2E-23 2.6E-28 255.7 34.2 249 494-768 483-736 (793)
50 KOG0313 Microtubule binding pr 99.9 1.7E-24 3.8E-29 225.6 21.4 229 505-768 114-374 (423)
51 KOG0643 Translation initiation 99.9 5.6E-24 1.2E-28 213.1 22.5 250 497-767 13-314 (327)
52 KOG0276 Vesicle coat complex C 99.9 5.5E-24 1.2E-28 232.6 24.3 236 494-765 55-294 (794)
53 KOG0294 WD40 repeat-containing 99.9 1.5E-23 3.2E-28 214.4 24.0 248 509-768 4-279 (362)
54 PTZ00420 coronin; Provisional 99.9 1.4E-22 3.1E-27 232.7 34.3 206 547-768 66-291 (568)
55 KOG0316 Conserved WD40 repeat- 99.9 5.9E-24 1.3E-28 209.4 19.4 219 546-768 8-255 (307)
56 KOG0305 Anaphase promoting com 99.9 1.7E-23 3.8E-28 232.0 24.5 237 494-768 217-459 (484)
57 KOG0313 Microtubule binding pr 99.9 4.9E-23 1.1E-27 214.8 24.8 262 472-768 115-416 (423)
58 KOG0274 Cdc4 and related F-box 99.9 8E-23 1.7E-27 233.9 27.9 236 505-768 217-480 (537)
59 KOG0284 Polyadenylation factor 99.9 2E-24 4.4E-29 226.7 13.3 195 555-768 96-292 (464)
60 KOG0306 WD40-repeat-containing 99.9 5.1E-23 1.1E-27 229.2 22.9 251 480-768 392-662 (888)
61 KOG0310 Conserved WD40 repeat- 99.9 8.5E-23 1.8E-27 219.1 23.7 231 497-766 71-305 (487)
62 KOG0299 U3 snoRNP-associated p 99.9 4.7E-23 1E-27 219.6 20.7 264 493-768 141-408 (479)
63 KOG0277 Peroxisomal targeting 99.9 7.8E-23 1.7E-27 203.6 20.4 206 545-768 51-263 (311)
64 KOG0641 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 192.1 27.9 252 493-768 31-301 (350)
65 KOG0293 WD40 repeat-containing 99.9 1.7E-23 3.6E-28 219.7 16.3 225 542-768 211-468 (519)
66 KOG0646 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 216.2 21.6 214 555-768 81-305 (476)
67 KOG0310 Conserved WD40 repeat- 99.9 5.4E-23 1.2E-27 220.6 17.9 201 551-768 64-266 (487)
68 KOG0289 mRNA splicing factor [ 99.9 4.9E-22 1.1E-26 210.1 24.8 260 473-767 232-503 (506)
69 KOG0647 mRNA export protein (c 99.9 9.3E-22 2E-26 200.2 25.6 256 471-768 19-279 (347)
70 KOG0319 WD40-repeat-containing 99.9 1.7E-22 3.7E-27 225.2 22.0 251 498-768 66-393 (775)
71 PTZ00421 coronin; Provisional 99.9 1.4E-21 3.1E-26 223.0 30.2 200 505-717 87-295 (493)
72 KOG0264 Nucleosome remodeling 99.9 2E-22 4.4E-27 214.9 21.2 252 503-768 134-402 (422)
73 KOG0275 Conserved WD40 repeat- 99.9 2.1E-23 4.6E-28 212.8 12.9 214 553-767 211-464 (508)
74 KOG0296 Angio-associated migra 99.9 1.6E-21 3.4E-26 202.9 26.7 275 474-768 78-396 (399)
75 KOG0772 Uncharacterized conser 99.9 5.8E-22 1.3E-26 213.0 22.5 260 493-767 166-484 (641)
76 KOG0292 Vesicle coat complex C 99.9 8.5E-22 1.8E-26 222.1 24.8 255 476-767 25-318 (1202)
77 KOG0288 WD40 repeat protein Ti 99.9 6.5E-23 1.4E-27 215.8 14.7 242 505-768 186-459 (459)
78 KOG0973 Histone transcription 99.9 8.3E-22 1.8E-26 228.6 24.5 260 499-767 18-352 (942)
79 PTZ00420 coronin; Provisional 99.9 4.1E-21 8.9E-26 220.7 28.6 180 573-768 50-246 (568)
80 KOG0300 WD40 repeat-containing 99.9 1.4E-21 3E-26 199.2 20.8 279 476-768 164-474 (481)
81 KOG0643 Translation initiation 99.9 6.4E-21 1.4E-25 191.2 23.3 202 550-768 5-218 (327)
82 KOG0308 Conserved WD40 repeat- 99.9 7.7E-22 1.7E-26 217.2 17.8 233 504-766 35-281 (735)
83 KOG0640 mRNA cleavage stimulat 99.9 7.9E-22 1.7E-26 200.8 16.5 205 547-768 104-333 (430)
84 KOG0269 WD40 repeat-containing 99.9 5.5E-22 1.2E-26 222.0 15.7 229 505-765 99-335 (839)
85 KOG1332 Vesicle coat complex C 99.9 2.6E-21 5.7E-26 191.9 18.8 247 493-768 10-284 (299)
86 KOG1408 WD40 repeat protein [F 99.9 4E-21 8.6E-26 212.3 21.1 199 553-768 457-711 (1080)
87 KOG0301 Phospholipase A2-activ 99.9 6.3E-21 1.4E-25 211.5 22.4 245 474-767 27-285 (745)
88 KOG0267 Microtubule severing p 99.9 1.5E-22 3.2E-27 224.9 9.2 222 503-761 37-259 (825)
89 KOG1407 WD40 repeat protein [F 99.9 1.6E-20 3.6E-25 187.8 22.0 229 503-767 29-308 (313)
90 KOG1446 Histone H3 (Lys4) meth 99.9 4.8E-20 1E-24 189.4 25.3 219 547-768 6-260 (311)
91 KOG0289 mRNA splicing factor [ 99.9 1.7E-20 3.7E-25 198.5 22.1 228 506-768 231-460 (506)
92 KOG0268 Sof1-like rRNA process 99.9 2.4E-21 5.2E-26 201.1 15.3 247 496-768 68-343 (433)
93 KOG0283 WD40 repeat-containing 99.9 7.8E-21 1.7E-25 215.8 20.7 224 493-721 266-541 (712)
94 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.4E-19 9.5E-24 188.3 33.1 238 507-768 2-277 (300)
95 KOG1446 Histone H3 (Lys4) meth 99.9 2.5E-19 5.4E-24 184.2 27.7 248 497-767 17-300 (311)
96 KOG4283 Transcription-coupled 99.9 4.6E-20 1E-24 187.0 21.5 257 505-767 55-362 (397)
97 KOG0301 Phospholipase A2-activ 99.9 1.8E-20 3.8E-25 208.0 19.4 220 506-768 25-247 (745)
98 KOG0641 WD40 repeat protein [G 99.8 4.4E-19 9.6E-24 173.9 26.4 256 483-767 78-346 (350)
99 KOG0264 Nucleosome remodeling 99.8 4.4E-20 9.6E-25 197.1 20.8 196 506-713 190-405 (422)
100 KOG1274 WD40 repeat protein [G 99.8 1.2E-19 2.6E-24 206.9 25.0 235 497-768 16-260 (933)
101 KOG0274 Cdc4 and related F-box 99.8 5.7E-20 1.2E-24 210.6 22.4 206 553-768 206-439 (537)
102 KOG1036 Mitotic spindle checkp 99.8 1.3E-19 2.9E-24 185.3 21.1 208 554-768 12-260 (323)
103 KOG0288 WD40 repeat protein Ti 99.8 3.6E-21 7.7E-26 202.8 9.6 216 549-768 169-415 (459)
104 KOG0772 Uncharacterized conser 99.8 5.4E-20 1.2E-24 198.0 18.5 209 547-768 159-392 (641)
105 KOG0300 WD40 repeat-containing 99.8 2.2E-20 4.7E-25 190.6 14.3 207 545-768 138-384 (481)
106 KOG0302 Ribosome Assembly prot 99.8 6.5E-20 1.4E-24 191.4 18.0 205 551-768 147-376 (440)
107 KOG0308 Conserved WD40 repeat- 99.8 1.3E-19 2.9E-24 199.7 21.0 260 474-768 39-325 (735)
108 KOG2445 Nuclear pore complex c 99.8 1.1E-18 2.3E-23 178.4 25.8 255 498-768 17-316 (361)
109 KOG0270 WD40 repeat-containing 99.8 1.1E-19 2.4E-24 193.2 19.2 251 503-768 189-447 (463)
110 KOG1407 WD40 repeat protein [F 99.8 1.7E-19 3.6E-24 180.7 19.0 201 549-768 14-217 (313)
111 KOG0973 Histone transcription 99.8 2.2E-19 4.7E-24 208.6 22.5 223 495-718 70-361 (942)
112 KOG0267 Microtubule severing p 99.8 5.3E-21 1.1E-25 212.7 7.1 204 547-768 20-224 (825)
113 KOG2055 WD40 repeat protein [G 99.8 1.5E-18 3.3E-23 185.2 24.3 253 496-768 215-510 (514)
114 KOG0306 WD40-repeat-containing 99.8 9.9E-19 2.2E-23 195.3 23.7 224 505-768 384-620 (888)
115 KOG0302 Ribosome Assembly prot 99.8 5E-19 1.1E-23 184.8 20.0 252 505-763 164-432 (440)
116 KOG0321 WD40 repeat-containing 99.8 5.3E-19 1.2E-23 194.6 19.7 252 503-768 61-389 (720)
117 KOG1332 Vesicle coat complex C 99.8 1.2E-19 2.7E-24 180.0 13.4 203 551-767 7-238 (299)
118 KOG4283 Transcription-coupled 99.8 5.2E-19 1.1E-23 179.4 17.7 212 550-768 38-274 (397)
119 KOG0268 Sof1-like rRNA process 99.8 1.1E-19 2.5E-24 188.7 11.9 214 547-768 58-300 (433)
120 KOG1273 WD40 repeat protein [G 99.8 2.8E-18 6E-23 175.6 21.2 207 558-768 26-320 (405)
121 KOG0639 Transducin-like enhanc 99.8 2.8E-18 6E-23 184.1 21.6 211 555-767 465-701 (705)
122 KOG0294 WD40 repeat-containing 99.8 3.6E-18 7.8E-23 175.1 21.1 200 494-714 41-283 (362)
123 KOG0642 Cell-cycle nuclear pro 99.8 6.7E-19 1.5E-23 192.1 16.3 249 493-768 293-559 (577)
124 KOG0299 U3 snoRNP-associated p 99.8 3E-18 6.6E-23 183.1 20.3 228 496-759 204-444 (479)
125 KOG1539 WD repeat protein [Gen 99.8 2E-17 4.3E-22 187.0 27.6 252 498-768 206-604 (910)
126 KOG4328 WD40 protein [Function 99.8 2.9E-18 6.3E-23 182.9 19.9 261 479-767 186-492 (498)
127 KOG0647 mRNA export protein (c 99.8 5.2E-18 1.1E-22 173.1 20.4 198 552-767 24-225 (347)
128 KOG2096 WD40 repeat protein [G 99.8 4.3E-18 9.4E-23 174.4 18.7 210 548-768 79-306 (420)
129 KOG2048 WD40 repeat protein [G 99.8 7.1E-17 1.5E-21 179.4 28.4 235 496-767 27-272 (691)
130 KOG0278 Serine/threonine kinas 99.8 5E-19 1.1E-23 176.1 10.2 215 551-768 10-252 (334)
131 KOG2096 WD40 repeat protein [G 99.8 2.2E-17 4.9E-22 169.2 22.5 197 552-767 184-399 (420)
132 KOG0639 Transducin-like enhanc 99.8 3.4E-18 7.5E-23 183.3 15.5 215 552-768 416-661 (705)
133 KOG1036 Mitotic spindle checkp 99.8 3.5E-17 7.6E-22 167.7 22.1 231 503-760 22-294 (323)
134 KOG1274 WD40 repeat protein [G 99.8 5E-17 1.1E-21 185.7 24.7 219 505-764 65-294 (933)
135 KOG0270 WD40 repeat-containing 99.8 8.4E-18 1.8E-22 179.1 17.1 186 567-768 192-402 (463)
136 KOG4378 Nuclear protein COP1 [ 99.8 2.9E-17 6.3E-22 176.2 20.4 242 476-752 51-305 (673)
137 KOG0269 WD40 repeat-containing 99.8 2.1E-18 4.7E-23 193.5 12.1 195 558-768 90-294 (839)
138 KOG0305 Anaphase promoting com 99.8 5E-17 1.1E-21 180.8 22.7 223 506-768 188-417 (484)
139 KOG1188 WD40 repeat protein [G 99.8 2E-17 4.2E-22 171.4 16.6 245 505-768 39-344 (376)
140 KOG0307 Vesicle coat complex C 99.7 6.8E-18 1.5E-22 197.0 13.9 231 507-767 81-324 (1049)
141 KOG1539 WD repeat protein [Gen 99.7 1.3E-16 2.9E-21 180.4 22.7 237 498-767 404-645 (910)
142 KOG1009 Chromatin assembly com 99.7 7.4E-17 1.6E-21 170.3 19.3 247 508-766 28-368 (434)
143 KOG1063 RNA polymerase II elon 99.7 1.3E-16 2.9E-21 177.3 22.0 266 474-768 281-646 (764)
144 KOG1007 WD repeat protein TSSC 99.7 7.3E-17 1.6E-21 163.7 18.0 222 543-766 110-357 (370)
145 KOG2445 Nuclear pore complex c 99.7 3.6E-16 7.7E-21 160.1 21.9 204 552-768 10-254 (361)
146 KOG0303 Actin-binding protein 99.7 1.4E-16 3E-21 167.4 19.2 202 548-767 74-291 (472)
147 KOG4378 Nuclear protein COP1 [ 99.7 1.7E-16 3.6E-21 170.4 18.8 193 558-768 82-278 (673)
148 KOG0646 WD40 repeat protein [G 99.7 3.2E-16 6.9E-21 168.0 20.0 200 499-720 86-315 (476)
149 KOG1034 Transcriptional repres 99.7 1.9E-16 4.1E-21 163.3 15.0 229 506-768 105-381 (385)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 3.5E-15 7.5E-20 158.4 25.1 182 567-768 1-185 (300)
151 KOG1408 WD40 repeat protein [F 99.7 7.8E-16 1.7E-20 170.9 19.8 232 536-768 350-669 (1080)
152 KOG4328 WD40 protein [Function 99.7 3.9E-16 8.4E-21 166.9 16.8 213 543-768 174-397 (498)
153 KOG0650 WD40 repeat nucleolar 99.7 3.1E-16 6.7E-21 171.8 16.3 207 543-767 388-677 (733)
154 COG2319 FOG: WD40 repeat [Gene 99.7 2.5E-14 5.4E-19 154.5 30.7 238 497-768 68-312 (466)
155 KOG2055 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 162.1 20.4 199 554-768 212-415 (514)
156 KOG0307 Vesicle coat complex C 99.7 8.9E-17 1.9E-21 187.8 11.3 198 556-768 65-282 (1049)
157 KOG1063 RNA polymerase II elon 99.7 4.6E-16 9.9E-21 173.1 16.3 219 545-768 515-761 (764)
158 KOG2106 Uncharacterized conser 99.7 1.6E-14 3.4E-19 155.9 26.7 189 556-767 247-474 (626)
159 KOG2106 Uncharacterized conser 99.7 8.2E-15 1.8E-19 158.1 24.4 220 509-768 260-519 (626)
160 KOG1445 Tumor-specific antigen 99.7 3.1E-15 6.7E-20 164.3 21.0 196 505-713 91-294 (1012)
161 KOG0290 Conserved WD40 repeat- 99.7 4.1E-15 8.9E-20 151.2 20.3 200 552-768 93-316 (364)
162 KOG0303 Actin-binding protein 99.7 6.2E-15 1.3E-19 155.2 20.8 196 505-715 93-297 (472)
163 KOG2919 Guanine nucleotide-bin 99.6 1.3E-14 2.8E-19 149.5 21.2 242 504-768 59-325 (406)
164 KOG0321 WD40 repeat-containing 99.6 2.3E-15 4.9E-20 166.3 15.9 201 560-768 54-299 (720)
165 COG2319 FOG: WD40 repeat [Gene 99.6 1.9E-13 4.1E-18 147.7 30.6 206 546-768 146-357 (466)
166 KOG2048 WD40 repeat protein [G 99.6 5.1E-14 1.1E-18 156.9 26.2 207 549-768 19-231 (691)
167 KOG1445 Tumor-specific antigen 99.6 2.7E-14 5.9E-19 156.9 22.7 157 556-714 628-800 (1012)
168 KOG1310 WD40 repeat protein [G 99.6 1.7E-15 3.6E-20 164.5 12.8 220 547-768 42-301 (758)
169 KOG4227 WD40 repeat protein [G 99.6 1.7E-14 3.7E-19 151.1 19.7 261 495-768 57-385 (609)
170 KOG0650 WD40 repeat nucleolar 99.6 6.1E-15 1.3E-19 161.8 17.0 205 549-767 515-732 (733)
171 KOG0649 WD40 repeat protein [G 99.6 8.8E-14 1.9E-18 138.5 22.9 202 500-718 16-241 (325)
172 KOG2919 Guanine nucleotide-bin 99.6 1.2E-14 2.6E-19 149.7 16.7 230 499-762 116-362 (406)
173 KOG0771 Prolactin regulatory e 99.6 8.2E-15 1.8E-19 156.0 15.5 192 559-767 148-351 (398)
174 KOG1273 WD40 repeat protein [G 99.6 1.5E-14 3.3E-19 148.4 16.5 152 600-768 26-224 (405)
175 KOG0644 Uncharacterized conser 99.6 2.9E-16 6.2E-21 177.1 4.3 217 546-768 181-424 (1113)
176 PRK11028 6-phosphogluconolacto 99.6 5.4E-13 1.2E-17 145.8 29.1 241 509-768 5-302 (330)
177 KOG1034 Transcriptional repres 99.6 1.1E-14 2.4E-19 150.3 14.2 214 551-768 34-277 (385)
178 KOG1538 Uncharacterized conser 99.6 1.8E-13 3.9E-18 151.3 24.2 204 547-768 45-291 (1081)
179 PRK01742 tolB translocation pr 99.6 9.9E-14 2.1E-18 157.4 22.5 194 549-768 197-399 (429)
180 KOG1524 WD40 repeat-containing 99.6 2.5E-14 5.3E-19 155.2 16.2 207 507-766 76-282 (737)
181 KOG1007 WD repeat protein TSSC 99.6 4.6E-14 1E-18 143.5 16.2 202 549-767 57-286 (370)
182 KOG4227 WD40 repeat protein [G 99.6 7E-14 1.5E-18 146.6 17.3 218 548-768 49-320 (609)
183 KOG1538 Uncharacterized conser 99.6 3.2E-14 6.9E-19 157.1 14.6 204 557-767 14-249 (1081)
184 KOG1517 Guanine nucleotide bin 99.6 1.9E-13 4.2E-18 157.9 20.9 247 504-768 1121-1379(1387)
185 KOG1188 WD40 repeat protein [G 99.6 7.4E-14 1.6E-18 145.1 15.7 187 568-768 41-240 (376)
186 KOG1009 Chromatin assembly com 99.5 1.1E-13 2.5E-18 146.4 16.7 203 555-759 13-249 (434)
187 KOG1240 Protein kinase contain 99.5 1.2E-12 2.6E-17 153.6 26.2 258 499-768 1054-1431(1431)
188 KOG1523 Actin-related protein 99.5 6.5E-13 1.4E-17 137.1 20.1 213 553-767 8-233 (361)
189 KOG1587 Cytoplasmic dynein int 99.5 8.6E-13 1.9E-17 150.9 22.7 236 505-768 254-514 (555)
190 KOG0649 WD40 repeat protein [G 99.5 3.2E-12 6.9E-17 127.5 23.6 195 505-713 71-275 (325)
191 KOG1310 WD40 repeat protein [G 99.5 5.4E-13 1.2E-17 145.2 19.2 196 503-717 59-308 (758)
192 KOG0644 Uncharacterized conser 99.5 2.7E-14 5.8E-19 161.4 8.6 234 495-767 191-465 (1113)
193 KOG2110 Uncharacterized conser 99.5 3.3E-12 7.2E-17 134.2 23.4 208 556-768 88-328 (391)
194 KOG0642 Cell-cycle nuclear pro 99.5 1.2E-13 2.7E-18 151.3 13.1 213 546-768 285-517 (577)
195 KOG0290 Conserved WD40 repeat- 99.5 5.3E-13 1.2E-17 136.0 16.6 189 505-709 162-362 (364)
196 KOG1523 Actin-related protein 99.5 1.7E-12 3.7E-17 134.1 18.7 192 506-714 22-238 (361)
197 KOG1240 Protein kinase contain 99.5 2.2E-12 4.7E-17 151.6 20.9 223 546-768 1039-1332(1431)
198 KOG1517 Guanine nucleotide bin 99.5 4.3E-12 9.4E-17 146.9 22.6 238 500-768 1070-1331(1387)
199 PRK02889 tolB translocation pr 99.4 1.8E-11 3.8E-16 138.9 26.1 193 551-762 191-392 (427)
200 KOG0771 Prolactin regulatory e 99.4 7.4E-13 1.6E-17 141.2 13.9 193 500-713 150-355 (398)
201 KOG1587 Cytoplasmic dynein int 99.4 2.6E-12 5.7E-17 146.9 19.0 199 555-768 242-470 (555)
202 KOG0322 G-protein beta subunit 99.4 3.9E-13 8.4E-18 135.5 10.7 204 547-768 6-321 (323)
203 KOG1963 WD40 repeat protein [G 99.4 1.8E-11 3.9E-16 140.6 25.2 213 552-767 202-484 (792)
204 PRK05137 tolB translocation pr 99.4 4E-11 8.7E-16 136.4 27.5 192 549-761 195-397 (435)
205 KOG4594 Sequence-specific sing 99.4 8.7E-14 1.9E-18 140.4 4.7 76 4-80 12-91 (354)
206 KOG2394 WD40 protein DMR-N9 [G 99.4 1.5E-11 3.3E-16 134.1 21.7 168 565-749 183-383 (636)
207 PRK04922 tolB translocation pr 99.4 2.4E-11 5.2E-16 138.1 24.5 191 550-761 198-399 (433)
208 PRK03629 tolB translocation pr 99.4 3.4E-11 7.4E-16 136.6 25.7 191 552-763 195-396 (429)
209 KOG2321 WD40 repeat protein [G 99.4 1.4E-11 3.1E-16 135.2 20.7 212 553-766 49-339 (703)
210 KOG1963 WD40 repeat protein [G 99.4 3E-11 6.5E-16 138.8 23.5 258 493-768 204-536 (792)
211 KOG2139 WD40 repeat protein [G 99.4 3.4E-11 7.3E-16 126.2 21.2 235 505-762 109-367 (445)
212 PF08662 eIF2A: Eukaryotic tra 99.4 3.6E-11 7.7E-16 121.7 20.9 150 559-713 9-180 (194)
213 PRK01742 tolB translocation pr 99.4 4.4E-11 9.5E-16 135.8 24.0 173 558-751 250-426 (429)
214 KOG2110 Uncharacterized conser 99.4 1.1E-10 2.4E-15 122.9 24.5 191 557-768 48-246 (391)
215 KOG1272 WD40-repeat-containing 99.4 5.1E-13 1.1E-17 143.3 7.2 189 558-768 132-321 (545)
216 KOG1334 WD40 repeat protein [G 99.4 1.4E-12 3.1E-17 140.7 9.0 222 546-767 133-463 (559)
217 PF02239 Cytochrom_D1: Cytochr 99.4 4.5E-10 9.8E-15 124.6 29.0 239 508-768 8-300 (369)
218 TIGR02800 propeller_TolB tol-p 99.3 3E-10 6.5E-15 128.0 27.2 191 551-762 185-386 (417)
219 PF08662 eIF2A: Eukaryotic tra 99.3 6.5E-11 1.4E-15 119.8 19.3 148 601-768 9-177 (194)
220 KOG2394 WD40 protein DMR-N9 [G 99.3 3.1E-11 6.8E-16 131.8 16.0 97 553-650 288-384 (636)
221 KOG4497 Uncharacterized conser 99.3 7.5E-12 1.6E-16 129.4 10.1 205 560-767 13-237 (447)
222 KOG1409 Uncharacterized conser 99.3 9.7E-11 2.1E-15 122.2 18.1 252 499-768 29-392 (404)
223 PRK11028 6-phosphogluconolacto 99.3 3.6E-10 7.7E-15 123.6 23.6 188 570-768 5-203 (330)
224 KOG1524 WD40 repeat-containing 99.3 1.8E-11 3.8E-16 133.3 11.2 171 567-760 75-246 (737)
225 PRK00178 tolB translocation pr 99.3 9.8E-10 2.1E-14 124.8 25.8 191 550-761 193-394 (430)
226 KOG0280 Uncharacterized conser 99.3 1.5E-10 3.3E-15 118.6 16.9 200 557-767 123-330 (339)
227 KOG2139 WD40 repeat protein [G 99.3 1.7E-10 3.6E-15 121.1 17.4 184 557-759 100-299 (445)
228 PRK03629 tolB translocation pr 99.3 1.8E-09 3.8E-14 122.7 27.4 175 558-750 245-427 (429)
229 KOG3881 Uncharacterized conser 99.3 5.1E-10 1.1E-14 118.7 21.0 201 502-719 111-327 (412)
230 KOG0322 G-protein beta subunit 99.3 1.1E-10 2.4E-15 118.0 15.1 158 553-711 148-322 (323)
231 PRK05137 tolB translocation pr 99.2 7.2E-10 1.6E-14 126.2 23.4 172 577-768 182-364 (435)
232 KOG3881 Uncharacterized conser 99.2 8.3E-10 1.8E-14 117.1 21.4 203 547-768 97-318 (412)
233 KOG1272 WD40-repeat-containing 99.2 3.6E-11 7.8E-16 129.4 10.8 248 499-762 134-401 (545)
234 KOG2111 Uncharacterized conser 99.2 2.9E-09 6.3E-14 110.4 24.1 207 555-765 94-317 (346)
235 KOG2111 Uncharacterized conser 99.2 2.6E-09 5.6E-14 110.8 23.6 173 577-767 75-253 (346)
236 PF10282 Lactonase: Lactonase, 99.2 2.6E-08 5.6E-13 110.0 33.0 241 499-768 41-320 (345)
237 PRK04792 tolB translocation pr 99.2 2.1E-09 4.7E-14 122.6 24.8 190 551-761 213-413 (448)
238 KOG4497 Uncharacterized conser 99.2 1.1E-09 2.4E-14 113.6 18.7 210 556-767 49-388 (447)
239 PRK02889 tolB translocation pr 99.2 5.2E-09 1.1E-13 118.9 25.5 176 555-751 239-425 (427)
240 KOG1354 Serine/threonine prote 99.2 5.9E-10 1.3E-14 116.3 16.0 254 496-768 27-357 (433)
241 PRK04922 tolB translocation pr 99.2 1.6E-09 3.5E-14 123.2 20.5 172 577-768 184-366 (433)
242 PF02239 Cytochrom_D1: Cytochr 99.1 1.8E-08 3.9E-13 111.9 26.8 247 501-768 43-345 (369)
243 TIGR02800 propeller_TolB tol-p 99.1 4.8E-09 1E-13 118.2 22.4 172 577-768 170-352 (417)
244 PRK01029 tolB translocation pr 99.1 1.2E-08 2.5E-13 115.9 24.3 198 553-768 182-401 (428)
245 KOG0974 WD-repeat protein WDR6 99.1 2.7E-09 5.9E-14 124.8 19.3 150 562-715 140-291 (967)
246 KOG1064 RAVE (regulator of V-A 99.1 6E-10 1.3E-14 135.1 13.8 189 502-721 2216-2407(2439)
247 KOG0974 WD-repeat protein WDR6 99.1 2.9E-09 6.3E-14 124.6 18.2 190 558-768 90-286 (967)
248 PRK01029 tolB translocation pr 99.1 3.1E-08 6.8E-13 112.4 25.1 178 557-751 232-425 (428)
249 KOG4547 WD40 repeat-containing 99.0 1.6E-08 3.4E-13 112.6 21.1 184 565-767 3-217 (541)
250 KOG2321 WD40 repeat protein [G 99.0 4E-09 8.7E-14 116.3 15.7 163 551-714 171-345 (703)
251 PF10282 Lactonase: Lactonase, 99.0 4.4E-07 9.5E-12 100.2 31.5 205 556-768 37-273 (345)
252 KOG4190 Uncharacterized conser 99.0 2E-09 4.2E-14 117.6 12.3 173 547-721 727-915 (1034)
253 KOG1354 Serine/threonine prote 99.0 5.9E-09 1.3E-13 109.0 13.5 209 555-768 25-299 (433)
254 COG4946 Uncharacterized protei 98.9 1.2E-07 2.7E-12 102.6 22.8 147 552-701 356-507 (668)
255 PRK00178 tolB translocation pr 98.9 9.5E-08 2.1E-12 108.6 23.2 163 578-760 180-350 (430)
256 PRK04792 tolB translocation pr 98.9 7.8E-08 1.7E-12 109.9 22.0 170 578-767 199-377 (448)
257 KOG4714 Nucleoporin [Nuclear s 98.9 1.1E-08 2.5E-13 103.5 12.3 254 505-768 46-316 (319)
258 KOG0309 Conserved WD40 repeat- 98.9 4.3E-09 9.3E-14 118.6 9.7 210 550-767 109-336 (1081)
259 KOG3914 WD repeat protein WDR4 98.9 1.7E-08 3.7E-13 107.8 13.5 170 496-681 64-233 (390)
260 PRK04043 tolB translocation pr 98.9 1.2E-06 2.6E-11 99.1 28.6 182 557-761 189-388 (419)
261 PLN02919 haloacid dehalogenase 98.9 1.1E-06 2.3E-11 109.9 30.2 206 557-768 625-886 (1057)
262 KOG1064 RAVE (regulator of V-A 98.8 1E-08 2.3E-13 124.7 11.5 186 551-768 2204-2396(2439)
263 KOG1409 Uncharacterized conser 98.8 1.1E-07 2.3E-12 99.8 17.3 181 475-671 39-270 (404)
264 KOG2315 Predicted translation 98.8 3.2E-07 7E-12 101.7 21.9 122 645-768 222-388 (566)
265 KOG4547 WD40 repeat-containing 98.8 7.1E-07 1.5E-11 99.6 24.8 144 566-713 69-221 (541)
266 COG2706 3-carboxymuconate cycl 98.8 7.6E-06 1.6E-10 87.1 29.4 215 553-767 37-318 (346)
267 COG5170 CDC55 Serine/threonine 98.8 3.6E-08 7.9E-13 101.8 10.1 252 497-767 29-364 (460)
268 TIGR02658 TTQ_MADH_Hv methylam 98.7 1E-05 2.2E-10 88.8 28.6 200 563-768 53-328 (352)
269 KOG0882 Cyclophilin-related pe 98.7 5.2E-08 1.1E-12 105.1 10.1 201 503-721 17-240 (558)
270 KOG0280 Uncharacterized conser 98.7 1.1E-06 2.5E-11 90.6 19.3 158 556-713 70-242 (339)
271 KOG1275 PAB-dependent poly(A) 98.7 5.4E-07 1.2E-11 104.4 18.1 266 483-768 45-340 (1118)
272 KOG2041 WD40 repeat protein [G 98.7 1.1E-07 2.3E-12 107.1 11.8 158 554-713 13-187 (1189)
273 PF15492 Nbas_N: Neuroblastoma 98.7 1.1E-05 2.3E-10 83.8 25.5 205 561-768 3-257 (282)
274 KOG0309 Conserved WD40 repeat- 98.7 5.6E-08 1.2E-12 109.8 9.5 197 555-768 24-230 (1081)
275 COG5170 CDC55 Serine/threonine 98.6 2.6E-07 5.6E-12 95.6 11.7 209 555-768 26-307 (460)
276 KOG4532 WD40-like repeat conta 98.6 8.8E-06 1.9E-10 83.2 22.3 237 497-761 75-323 (344)
277 TIGR03300 assembly_YfgL outer 98.6 1.4E-05 3.1E-10 89.0 26.7 192 566-768 104-336 (377)
278 KOG4190 Uncharacterized conser 98.6 2.1E-07 4.5E-12 102.1 11.0 163 503-680 744-915 (1034)
279 KOG1912 WD40 repeat protein [G 98.6 2.5E-06 5.4E-11 97.4 19.2 208 557-767 17-301 (1062)
280 KOG1832 HIV-1 Vpr-binding prot 98.6 9.6E-08 2.1E-12 109.6 7.6 167 544-721 1090-1300(1516)
281 TIGR03300 assembly_YfgL outer 98.6 2.8E-05 6E-10 86.7 26.9 192 567-768 145-377 (377)
282 TIGR02658 TTQ_MADH_Hv methylam 98.5 3.5E-05 7.6E-10 84.6 26.6 162 558-720 107-338 (352)
283 KOG2315 Predicted translation 98.5 7.6E-06 1.7E-10 91.0 21.1 150 560-715 222-393 (566)
284 KOG1334 WD40 repeat protein [G 98.5 1.7E-07 3.6E-12 102.1 7.8 168 588-768 133-310 (559)
285 PF04762 IKI3: IKI3 family; I 98.5 1.6E-05 3.4E-10 97.9 25.9 211 554-768 208-454 (928)
286 PF08450 SGL: SMP-30/Gluconola 98.5 0.00023 5E-09 74.5 30.9 180 558-759 42-244 (246)
287 COG4946 Uncharacterized protei 98.5 2.3E-05 5E-10 85.5 22.6 174 563-759 327-507 (668)
288 PF08513 LisH: LisH; InterPro 98.5 1.5E-07 3.3E-12 63.3 3.6 27 10-36 1-27 (27)
289 KOG2041 WD40 repeat protein [G 98.5 1.1E-05 2.5E-10 91.2 20.2 247 505-765 25-332 (1189)
290 PF08450 SGL: SMP-30/Gluconola 98.4 0.00011 2.3E-09 77.0 26.1 193 559-768 3-211 (246)
291 KOG3914 WD repeat protein WDR4 98.4 2.1E-06 4.5E-11 92.1 13.0 159 558-721 65-232 (390)
292 KOG2314 Translation initiation 98.4 1.5E-05 3.2E-10 88.4 19.2 241 499-763 254-560 (698)
293 KOG2066 Vacuolar assembly/sort 98.4 1.3E-05 2.8E-10 92.6 18.9 174 504-712 47-233 (846)
294 COG5354 Uncharacterized protei 98.4 3.4E-05 7.3E-10 85.1 21.2 204 556-767 72-303 (561)
295 PLN02919 haloacid dehalogenase 98.4 1.8E-05 4E-10 99.0 22.0 157 558-716 685-892 (1057)
296 KOG2695 WD40 repeat protein [G 98.4 9.9E-07 2.1E-11 92.7 8.9 156 561-720 217-384 (425)
297 COG2706 3-carboxymuconate cycl 98.4 0.00039 8.5E-09 74.3 28.3 157 558-714 91-276 (346)
298 KOG1645 RING-finger-containing 98.4 6.1E-06 1.3E-10 88.5 14.2 218 546-768 184-459 (463)
299 KOG0882 Cyclophilin-related pe 98.4 1.7E-06 3.6E-11 93.7 9.9 210 553-768 7-229 (558)
300 PF15492 Nbas_N: Neuroblastoma 98.3 0.00018 3.9E-09 74.8 23.8 159 557-716 45-263 (282)
301 COG5354 Uncharacterized protei 98.3 0.00015 3.2E-09 80.2 23.9 203 560-768 136-393 (561)
302 PRK04043 tolB translocation pr 98.3 0.00012 2.5E-09 83.1 24.3 162 577-761 169-339 (419)
303 PF07433 DUF1513: Protein of u 98.3 0.00019 4.1E-09 76.6 23.8 201 557-768 6-245 (305)
304 KOG4714 Nucleoporin [Nuclear s 98.3 3.2E-06 7E-11 86.0 9.9 95 578-672 160-255 (319)
305 KOG4532 WD40-like repeat conta 98.3 5.2E-05 1.1E-09 77.7 18.5 188 566-766 83-278 (344)
306 PF00400 WD40: WD domain, G-be 98.3 2.1E-06 4.5E-11 62.8 6.3 39 587-625 1-39 (39)
307 KOG3617 WD40 and TPR repeat-co 98.3 1E-05 2.3E-10 93.0 14.7 207 558-768 62-331 (1416)
308 KOG1912 WD40 repeat protein [G 98.3 0.00014 3E-09 83.7 23.4 211 480-713 56-305 (1062)
309 PF04762 IKI3: IKI3 family; I 98.3 0.0002 4.2E-09 88.5 26.9 199 553-767 73-330 (928)
310 PF13360 PQQ_2: PQQ-like domai 98.3 0.00023 4.9E-09 73.5 23.0 179 566-768 35-228 (238)
311 PF00400 WD40: WD domain, G-be 98.2 3.6E-06 7.8E-11 61.5 6.7 38 546-583 2-39 (39)
312 KOG1275 PAB-dependent poly(A) 98.2 1.9E-05 4.1E-10 92.0 15.6 151 555-711 177-341 (1118)
313 KOG2314 Translation initiation 98.2 8.4E-05 1.8E-09 82.7 18.5 135 559-699 214-363 (698)
314 KOG2066 Vacuolar assembly/sort 98.2 3.5E-05 7.5E-10 89.1 15.8 150 555-720 39-195 (846)
315 PF07433 DUF1513: Protein of u 98.2 0.00043 9.3E-09 73.9 22.9 155 561-718 56-253 (305)
316 PF11768 DUF3312: Protein of u 98.1 0.00029 6.3E-09 79.7 19.9 113 558-674 208-332 (545)
317 KOG2695 WD40 repeat protein [G 98.0 7.9E-06 1.7E-10 86.1 6.7 128 554-683 251-388 (425)
318 PRK11138 outer membrane biogen 98.0 0.0016 3.6E-08 73.2 25.6 176 568-768 206-392 (394)
319 KOG2114 Vacuolar assembly/sort 98.0 0.00078 1.7E-08 78.8 22.0 184 557-759 27-233 (933)
320 PF13360 PQQ_2: PQQ-like domai 98.0 0.0022 4.8E-08 66.1 23.5 147 566-717 75-235 (238)
321 PF11768 DUF3312: Protein of u 98.0 0.00032 6.9E-09 79.4 18.1 76 553-630 257-332 (545)
322 PRK11138 outer membrane biogen 97.9 0.0023 4.9E-08 72.0 25.0 146 566-717 119-279 (394)
323 PRK02888 nitrous-oxide reducta 97.9 0.00037 7.9E-09 80.6 17.3 149 563-713 200-405 (635)
324 KOG1008 Uncharacterized conser 97.9 6.2E-06 1.3E-10 92.8 2.7 188 506-713 70-276 (783)
325 KOG1920 IkappaB kinase complex 97.8 0.00079 1.7E-08 81.3 19.5 198 555-767 68-319 (1265)
326 KOG1832 HIV-1 Vpr-binding prot 97.8 1.5E-05 3.4E-10 92.0 4.3 125 587-715 1091-1217(1516)
327 KOG2114 Vacuolar assembly/sort 97.8 0.0035 7.6E-08 73.5 23.0 191 503-715 32-246 (933)
328 PF06977 SdiA-regulated: SdiA- 97.8 0.014 2.9E-07 61.4 25.0 209 548-767 14-247 (248)
329 COG0823 TolB Periplasmic compo 97.7 0.00093 2E-08 75.7 17.4 161 551-714 188-360 (425)
330 KOG3621 WD40 repeat-containing 97.7 0.0018 3.9E-08 74.5 18.6 130 502-649 41-179 (726)
331 KOG1645 RING-finger-containing 97.7 0.00033 7.2E-09 75.5 11.9 94 579-674 175-269 (463)
332 PF06433 Me-amine-dh_H: Methyl 97.7 0.0075 1.6E-07 65.3 22.0 205 559-768 39-318 (342)
333 COG3391 Uncharacterized conser 97.6 0.012 2.6E-07 66.0 24.1 157 558-717 76-244 (381)
334 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.012 2.7E-07 60.5 21.4 104 566-671 62-165 (354)
335 KOG1920 IkappaB kinase complex 97.6 0.012 2.6E-07 71.6 24.7 161 554-716 108-326 (1265)
336 PF04053 Coatomer_WDAD: Coatom 97.6 0.0061 1.3E-07 69.4 20.9 145 551-712 28-173 (443)
337 PF08596 Lgl_C: Lethal giant l 97.6 0.0074 1.6E-07 67.8 21.3 175 543-720 74-298 (395)
338 KOG4640 Anaphase-promoting com 97.5 0.00037 8E-09 79.0 9.8 94 556-650 21-115 (665)
339 KOG1008 Uncharacterized conser 97.5 3.8E-05 8.2E-10 86.7 1.8 198 555-768 56-273 (783)
340 PRK02888 nitrous-oxide reducta 97.5 0.0065 1.4E-07 70.6 19.8 196 566-768 140-402 (635)
341 PF03178 CPSF_A: CPSF A subuni 97.5 0.0072 1.6E-07 66.0 19.6 172 577-767 2-199 (321)
342 cd00216 PQQ_DH Dehydrogenases 97.5 0.024 5.1E-07 65.8 24.1 151 568-719 111-326 (488)
343 PF02897 Peptidase_S9_N: Proly 97.4 0.04 8.7E-07 62.2 25.5 155 558-714 126-311 (414)
344 KOG3617 WD40 and TPR repeat-co 97.4 0.00052 1.1E-08 79.5 9.5 110 558-671 18-131 (1416)
345 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.033 7.2E-07 61.7 23.1 160 555-715 42-271 (353)
346 PF08596 Lgl_C: Lethal giant l 97.3 0.035 7.6E-07 62.4 22.6 194 557-767 3-287 (395)
347 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.013 2.8E-07 65.0 18.6 100 564-665 1-125 (353)
348 PF00780 CNH: CNH domain; Int 97.2 0.092 2E-06 55.7 23.4 142 566-715 6-168 (275)
349 COG0823 TolB Periplasmic compo 97.1 0.0093 2E-07 67.6 15.4 154 587-760 182-345 (425)
350 KOG3621 WD40 repeat-containing 97.1 0.0034 7.3E-08 72.3 11.7 136 556-692 34-180 (726)
351 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.033 7.1E-07 50.7 15.8 102 643-766 2-110 (111)
352 PF04053 Coatomer_WDAD: Coatom 97.1 0.01 2.2E-07 67.6 15.6 137 567-713 117-263 (443)
353 PF06977 SdiA-regulated: SdiA- 97.1 0.17 3.6E-06 53.3 23.3 152 556-709 65-247 (248)
354 smart00320 WD40 WD40 repeats. 97.1 0.0016 3.4E-08 44.8 5.7 39 587-625 2-40 (40)
355 PF03178 CPSF_A: CPSF A subuni 97.1 0.042 9.1E-07 60.0 19.5 151 553-709 86-262 (321)
356 PF14583 Pectate_lyase22: Olig 97.0 0.3 6.5E-06 54.1 25.3 142 500-661 41-208 (386)
357 smart00320 WD40 WD40 repeats. 97.0 0.0017 3.7E-08 44.6 5.4 37 547-583 4-40 (40)
358 smart00667 LisH Lissencephaly 97.0 0.001 2.2E-08 46.9 4.1 31 9-39 3-33 (34)
359 COG3391 Uncharacterized conser 97.0 0.077 1.7E-06 59.5 21.3 160 557-718 117-289 (381)
360 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.025 5.3E-07 51.5 13.8 101 558-666 2-109 (111)
361 KOG4640 Anaphase-promoting com 96.9 0.0035 7.5E-08 71.4 9.5 92 598-692 21-115 (665)
362 PRK13616 lipoprotein LpqB; Pro 96.9 0.054 1.2E-06 64.0 19.7 139 556-705 350-518 (591)
363 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.32 7E-06 50.5 22.2 138 567-709 23-162 (354)
364 PF05096 Glu_cyclase_2: Glutam 96.8 0.56 1.2E-05 49.4 24.4 169 588-760 34-250 (264)
365 PF08553 VID27: VID27 cytoplas 96.8 0.039 8.4E-07 66.4 17.6 142 566-711 492-646 (794)
366 PF04841 Vps16_N: Vps16, N-ter 96.8 0.12 2.6E-06 58.6 20.8 48 578-627 62-109 (410)
367 cd00216 PQQ_DH Dehydrogenases 96.8 0.092 2E-06 60.9 20.3 148 567-719 61-271 (488)
368 COG3386 Gluconolactonase [Carb 96.8 0.39 8.5E-06 52.2 23.7 153 558-712 68-243 (307)
369 PF04841 Vps16_N: Vps16, N-ter 96.8 0.38 8.2E-06 54.6 24.4 151 556-714 81-248 (410)
370 PRK13616 lipoprotein LpqB; Pro 96.6 0.069 1.5E-06 63.1 17.6 150 598-767 350-522 (591)
371 KOG2079 Vacuolar assembly/sort 96.6 0.023 4.9E-07 68.5 13.1 101 566-670 98-202 (1206)
372 COG3490 Uncharacterized protei 96.5 0.32 7E-06 51.1 19.5 144 558-701 70-244 (366)
373 COG3386 Gluconolactonase [Carb 96.5 0.086 1.9E-06 57.2 16.1 144 557-702 112-275 (307)
374 PF08553 VID27: VID27 cytoplas 96.4 0.12 2.6E-06 62.3 18.4 127 616-761 501-639 (794)
375 KOG2444 WD40 repeat protein [G 96.4 0.0034 7.4E-08 63.6 4.2 138 611-768 32-175 (238)
376 PF05694 SBP56: 56kDa selenium 96.4 1.3 2.8E-05 49.7 24.3 198 561-759 135-392 (461)
377 PRK10115 protease 2; Provision 96.2 1.3 2.8E-05 53.7 25.8 112 557-670 128-254 (686)
378 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.2 1.5 3.3E-05 51.4 25.4 152 567-718 120-339 (527)
379 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.1 0.6 1.3E-05 54.8 21.8 111 567-681 69-199 (527)
380 PF14583 Pectate_lyase22: Olig 96.1 1.2 2.5E-05 49.6 22.1 142 561-704 41-209 (386)
381 PF00780 CNH: CNH domain; Int 96.0 0.26 5.7E-06 52.1 16.9 137 608-763 6-159 (275)
382 KOG3630 Nuclear pore complex, 96.0 0.073 1.6E-06 64.6 13.2 140 557-699 102-260 (1405)
383 KOG2395 Protein involved in va 95.8 0.24 5.2E-06 56.0 15.4 130 612-761 349-492 (644)
384 KOG2444 WD40 repeat protein [G 95.8 0.02 4.3E-07 58.3 6.3 134 570-713 33-167 (238)
385 PF15390 DUF4613: Domain of un 95.7 0.5 1.1E-05 54.3 17.7 149 555-713 19-187 (671)
386 PF15390 DUF4613: Domain of un 95.7 0.21 4.6E-06 57.2 14.7 137 556-692 57-212 (671)
387 PHA02713 hypothetical protein; 95.7 0.39 8.5E-06 56.7 17.7 64 566-631 303-379 (557)
388 KOG2395 Protein involved in va 95.7 0.13 2.9E-06 57.9 12.7 143 564-711 342-499 (644)
389 PF06433 Me-amine-dh_H: Methyl 95.6 1.2 2.5E-05 48.7 19.6 154 568-721 148-329 (342)
390 COG3204 Uncharacterized protei 95.6 0.56 1.2E-05 49.7 16.4 118 594-713 82-211 (316)
391 PF10168 Nup88: Nuclear pore c 95.6 0.95 2.1E-05 54.7 20.7 82 553-635 82-187 (717)
392 PF12234 Rav1p_C: RAVE protein 95.6 0.42 9.1E-06 56.4 17.1 125 543-670 17-155 (631)
393 PF10214 Rrn6: RNA polymerase 95.6 4.2 9.1E-05 50.0 26.7 158 553-713 77-277 (765)
394 TIGR03074 PQQ_membr_DH membran 95.5 2.2 4.7E-05 52.1 23.4 112 567-681 194-354 (764)
395 KOG4441 Proteins containing BT 95.5 0.91 2E-05 53.7 19.8 107 566-676 332-457 (571)
396 PF02333 Phytase: Phytase; In 95.4 2.7 5.9E-05 46.8 22.0 191 566-768 67-288 (381)
397 TIGR03118 PEPCTERM_chp_1 conse 95.4 3.3 7E-05 44.5 21.1 114 558-671 25-170 (336)
398 PF05694 SBP56: 56kDa selenium 95.2 0.89 1.9E-05 51.0 17.3 146 557-702 182-393 (461)
399 KOG4499 Ca2+-binding protein R 95.2 1.7 3.6E-05 44.8 17.6 134 598-750 109-263 (310)
400 COG3204 Uncharacterized protei 95.2 1.3 2.8E-05 47.2 17.4 162 552-714 82-265 (316)
401 COG3490 Uncharacterized protei 95.1 0.6 1.3E-05 49.2 14.6 153 562-717 120-315 (366)
402 KOG2079 Vacuolar assembly/sort 95.1 0.13 2.8E-06 62.3 11.0 71 554-626 129-202 (1206)
403 KOG1916 Nuclear protein, conta 95.1 0.0056 1.2E-07 72.0 -0.2 128 551-683 128-282 (1283)
404 KOG3630 Nuclear pore complex, 95.0 0.21 4.5E-06 60.8 12.4 146 599-757 102-260 (1405)
405 PF10647 Gmad1: Lipoprotein Lp 95.0 1.6 3.5E-05 46.1 18.0 151 599-762 25-187 (253)
406 KOG2377 Uncharacterized conser 95.0 2.1 4.5E-05 47.9 18.8 120 554-675 65-189 (657)
407 PHA02713 hypothetical protein; 94.9 0.56 1.2E-05 55.4 15.8 143 566-714 351-535 (557)
408 PF05096 Glu_cyclase_2: Glutam 94.8 3.5 7.6E-05 43.6 19.7 155 558-720 47-211 (264)
409 TIGR02604 Piru_Ver_Nterm putat 94.8 1.2 2.6E-05 49.7 17.5 142 556-699 14-200 (367)
410 PF02897 Peptidase_S9_N: Proly 94.7 9.7 0.00021 42.9 25.3 151 560-712 174-357 (414)
411 KOG1897 Damage-specific DNA bi 94.6 15 0.00032 45.0 26.8 207 555-766 629-894 (1096)
412 PF10647 Gmad1: Lipoprotein Lp 94.5 7.4 0.00016 41.1 21.6 145 557-704 25-187 (253)
413 PF12894 Apc4_WD40: Anaphase-p 94.4 0.1 2.2E-06 40.2 5.2 33 555-588 11-43 (47)
414 PF14870 PSII_BNR: Photosynthe 94.3 4.7 0.0001 43.7 19.7 161 542-709 133-301 (302)
415 KOG4441 Proteins containing BT 94.1 1.6 3.5E-05 51.6 17.1 108 566-678 380-506 (571)
416 PF14727 PHTB1_N: PTHB1 N-term 93.9 14 0.0003 41.9 28.6 177 568-766 146-356 (418)
417 KOG1916 Nuclear protein, conta 93.9 0.07 1.5E-06 63.2 5.1 119 557-676 182-328 (1283)
418 KOG1897 Damage-specific DNA bi 93.8 3.5 7.6E-05 50.2 18.8 149 556-709 830-1001(1096)
419 PF12234 Rav1p_C: RAVE protein 93.8 1.8 4E-05 51.1 16.5 116 642-768 31-154 (631)
420 PF07995 GSDH: Glucose / Sorbo 93.8 13 0.00028 40.9 23.4 28 738-765 303-330 (331)
421 PHA03098 kelch-like protein; P 93.5 1.8 4E-05 50.7 16.3 106 566-675 294-418 (534)
422 PRK10350 hypothetical protein; 93.5 0.25 5.4E-06 45.2 6.7 26 68-93 21-47 (145)
423 PF14727 PHTB1_N: PTHB1 N-term 93.4 17 0.00037 41.3 23.3 143 567-711 37-203 (418)
424 PF14870 PSII_BNR: Photosynthe 93.3 14 0.00031 40.1 24.8 155 594-767 141-301 (302)
425 TIGR03074 PQQ_membr_DH membran 93.3 22 0.00048 43.6 25.1 155 566-721 259-486 (764)
426 COG3823 Glutamine cyclotransfe 93.2 1.3 2.9E-05 44.7 12.0 103 608-713 55-159 (262)
427 TIGR02604 Piru_Ver_Nterm putat 93.2 3.1 6.7E-05 46.4 16.7 161 598-761 14-204 (367)
428 PHA03098 kelch-like protein; P 92.9 3.6 7.9E-05 48.2 17.6 106 566-676 342-469 (534)
429 PHA02790 Kelch-like protein; P 92.9 3.2 7E-05 48.1 16.8 105 566-675 271-388 (480)
430 PF14761 HPS3_N: Hermansky-Pud 92.8 7 0.00015 40.0 16.7 148 610-766 29-210 (215)
431 PF14781 BBS2_N: Ciliary BBSom 92.6 3 6.5E-05 39.4 12.8 113 601-715 2-128 (136)
432 COG5276 Uncharacterized conser 92.5 17 0.00037 38.9 26.9 185 505-713 95-286 (370)
433 PF12894 Apc4_WD40: Anaphase-p 92.4 0.38 8.2E-06 37.0 5.5 31 597-627 11-41 (47)
434 PF10395 Utp8: Utp8 family; I 92.4 16 0.00034 43.6 21.2 159 555-717 129-310 (670)
435 COG4257 Vgb Streptogramin lyas 92.2 18 0.00039 38.4 19.2 153 558-714 64-220 (353)
436 TIGR03548 mutarot_permut cycli 92.1 13 0.00028 40.4 19.5 107 566-675 72-198 (323)
437 PRK13684 Ycf48-like protein; P 91.6 25 0.00053 38.8 21.8 152 597-768 172-329 (334)
438 PRK13684 Ycf48-like protein; P 91.6 7.5 0.00016 42.8 17.0 150 555-711 172-330 (334)
439 PHA02790 Kelch-like protein; P 91.4 8.9 0.00019 44.5 18.1 104 566-676 318-428 (480)
440 PF08728 CRT10: CRT10; InterP 91.3 5.5 0.00012 47.7 16.1 112 558-670 103-245 (717)
441 PF11498 Activator_LAG-3: Tran 91.3 0.06 1.3E-06 57.3 0.0 14 121-134 371-384 (468)
442 PF08801 Nucleoporin_N: Nup133 90.8 6 0.00013 44.9 15.7 29 740-768 189-217 (422)
443 PF08728 CRT10: CRT10; InterP 90.5 6.8 0.00015 47.0 15.8 104 652-768 113-244 (717)
444 PF10168 Nup88: Nuclear pore c 90.4 9.3 0.0002 46.4 17.4 74 598-672 85-180 (717)
445 PF14761 HPS3_N: Hermansky-Pud 90.3 5.5 0.00012 40.7 13.0 112 653-767 29-160 (215)
446 KOG4499 Ca2+-binding protein R 90.0 12 0.00025 38.9 14.8 133 557-692 110-263 (310)
447 PF10395 Utp8: Utp8 family; I 89.6 45 0.00097 39.9 21.4 121 597-718 129-265 (670)
448 COG1520 FOG: WD40-like repeat 89.6 22 0.00048 39.5 18.7 147 566-717 68-222 (370)
449 PF07250 Glyoxal_oxid_N: Glyox 89.1 11 0.00024 39.5 14.6 141 579-721 48-206 (243)
450 PF14655 RAB3GAP2_N: Rab3 GTPa 89.0 4.5 9.8E-05 45.8 12.5 88 542-631 294-402 (415)
451 PLN00033 photosystem II stabil 88.9 30 0.00066 39.1 19.0 143 558-709 241-396 (398)
452 PF10214 Rrn6: RNA polymerase 88.9 23 0.00049 43.7 19.5 120 595-716 77-236 (765)
453 PF11635 Med16: Mediator compl 88.8 31 0.00067 42.5 20.5 80 682-765 259-345 (753)
454 PF14655 RAB3GAP2_N: Rab3 GTPa 88.4 5.3 0.00012 45.2 12.5 91 590-681 300-408 (415)
455 TIGR02276 beta_rpt_yvtn 40-res 88.2 2 4.4E-05 31.2 6.3 41 650-690 1-41 (42)
456 PF07995 GSDH: Glucose / Sorbo 88.2 25 0.00054 38.6 17.6 101 558-660 4-133 (331)
457 PF07569 Hira: TUP1-like enhan 88.0 3 6.5E-05 43.1 9.5 73 605-679 18-103 (219)
458 PF07569 Hira: TUP1-like enhan 87.9 2.8 6E-05 43.3 9.2 65 563-628 18-96 (219)
459 PF13449 Phytase-like: Esteras 87.4 49 0.0011 36.2 22.7 142 556-699 20-231 (326)
460 PF05935 Arylsulfotrans: Aryls 87.1 53 0.0011 38.1 20.1 197 561-762 153-438 (477)
461 KOG1900 Nuclear pore complex, 87.0 6.1 0.00013 49.6 12.6 139 574-714 96-274 (1311)
462 KOG4659 Uncharacterized conser 86.3 58 0.0013 41.4 19.8 16 559-574 596-611 (1899)
463 TIGR03548 mutarot_permut cycli 86.3 36 0.00079 36.9 17.4 66 608-675 72-151 (323)
464 PLN02153 epithiospecifier prot 86.2 43 0.00093 36.7 18.1 66 566-631 85-171 (341)
465 PF05935 Arylsulfotrans: Aryls 85.8 50 0.0011 38.3 19.0 143 575-721 126-310 (477)
466 PRK10115 protease 2; Provision 85.4 97 0.0021 37.7 27.0 150 559-712 175-346 (686)
467 KOG1896 mRNA cleavage and poly 85.4 41 0.00089 42.3 18.2 196 555-767 964-1210(1366)
468 TIGR03547 muta_rot_YjhT mutatr 85.4 62 0.0013 35.4 21.7 53 566-618 63-128 (346)
469 COG5167 VID27 Protein involved 85.3 20 0.00044 41.0 14.4 143 565-712 477-632 (776)
470 COG5276 Uncharacterized conser 85.0 60 0.0013 34.9 25.6 150 557-715 88-244 (370)
471 PF10313 DUF2415: Uncharacteri 84.9 3.3 7.2E-05 31.2 5.7 31 556-586 1-34 (43)
472 KOG4369 RTK signaling protein 83.7 1.2 2.5E-05 54.6 4.3 6 280-285 2018-2023(2131)
473 KOG1898 Splicing factor 3b, su 83.5 60 0.0013 40.4 18.2 124 579-708 855-1000(1205)
474 PF12657 TFIIIC_delta: Transcr 83.5 5.7 0.00012 39.3 8.7 32 641-672 86-122 (173)
475 PF10313 DUF2415: Uncharacteri 83.3 4 8.6E-05 30.8 5.5 32 641-672 1-34 (43)
476 KOG2377 Uncharacterized conser 83.3 12 0.00026 42.1 11.5 104 595-701 64-172 (657)
477 KOG2280 Vacuolar assembly/sort 83.2 41 0.00088 40.4 16.3 155 556-716 84-250 (829)
478 COG5167 VID27 Protein involved 83.1 8.6 0.00019 43.8 10.4 61 608-671 572-632 (776)
479 KOG4460 Nuclear pore complex, 82.9 13 0.00027 42.6 11.7 84 685-768 106-196 (741)
480 KOG2247 WD40 repeat-containing 82.8 0.18 3.8E-06 56.5 -2.6 144 600-763 37-181 (615)
481 COG1506 DAP2 Dipeptidyl aminop 82.7 36 0.00079 40.8 16.7 60 594-657 56-117 (620)
482 COG4257 Vgb Streptogramin lyas 82.7 34 0.00074 36.4 13.9 101 598-701 62-166 (353)
483 KOG1900 Nuclear pore complex, 82.6 7.4 0.00016 48.9 10.6 161 600-768 81-270 (1311)
484 TIGR01063 gyrA DNA gyrase, A s 82.3 1.4E+02 0.003 37.1 22.6 154 558-713 537-719 (800)
485 PRK10350 hypothetical protein; 82.1 8.5 0.00018 35.6 8.2 11 57-67 14-24 (145)
486 PF14779 BBS1: Ciliary BBSome 82.0 74 0.0016 33.7 18.2 70 640-709 176-255 (257)
487 PRK14131 N-acetylneuraminic ac 81.7 93 0.002 34.7 19.0 12 620-631 190-201 (376)
488 KOG2247 WD40 repeat-containing 81.6 0.33 7.2E-06 54.4 -1.0 140 559-704 38-180 (615)
489 KOG1520 Predicted alkaloid syn 81.2 60 0.0013 36.1 15.9 83 617-702 197-284 (376)
490 KOG1983 Tomosyn and related SN 80.9 21 0.00046 45.1 14.1 35 556-590 36-70 (993)
491 PLN00033 photosystem II stabil 80.3 1.1E+02 0.0024 34.6 23.0 148 600-767 241-396 (398)
492 TIGR03606 non_repeat_PQQ dehyd 80.2 1.2E+02 0.0026 35.0 20.8 108 554-661 28-166 (454)
493 KOG2280 Vacuolar assembly/sort 80.1 65 0.0014 38.7 16.5 50 577-628 64-113 (829)
494 KOG3616 Selective LIM binding 79.8 22 0.00049 42.2 12.5 68 557-627 16-83 (1636)
495 PF14781 BBS2_N: Ciliary BBSom 79.4 58 0.0013 30.9 13.5 113 561-678 4-132 (136)
496 TIGR03606 non_repeat_PQQ dehyd 79.3 67 0.0015 37.0 16.3 58 636-694 25-90 (454)
497 KOG1983 Tomosyn and related SN 78.9 46 0.001 42.2 16.1 26 691-716 243-268 (993)
498 PLN02193 nitrile-specifier pro 78.8 1.3E+02 0.0029 34.7 19.7 200 560-768 222-460 (470)
499 PLN02153 epithiospecifier prot 77.9 1.1E+02 0.0024 33.4 21.0 219 544-768 8-282 (341)
500 COG4590 ABC-type uncharacteriz 77.7 6.8 0.00015 43.9 7.4 163 548-713 213-387 (733)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.8e-35 Score=309.20 Aligned_cols=248 Identities=26% Similarity=0.397 Sum_probs=223.7
Q ss_pred ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC--CCEEEEEeCCC
Q 004207 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDK 577 (768)
Q Consensus 500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd--g~~LaSgs~Dg 577 (768)
..+...+..|++||++|.+++|.++.. ..+.++++|++.|.++.|+|. +..||||+.||
T Consensus 181 ~~fS~ds~~laT~swsG~~kvW~~~~~-------------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 181 CSFSRDSKHLATGSWSGLVKVWSVPQC-------------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred eEeecCCCeEEEeecCCceeEeecCCc-------------------ceeEEEeccccceeeEEEccCCCccceeeeccCC
Confidence 334556789999999999999965433 457889999999999999996 56899999999
Q ss_pred cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLa 657 (768)
+|++|++++.+++..+.+|...|..++|+|+|++|+|+|.|.+-++||++++.. +....||...|.+|+|+++|. +++
T Consensus 242 tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGS-L~~ 319 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGS-LAA 319 (459)
T ss_pred ceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCc-eee
Confidence 999999999999999999999999999999999999999999999999999775 677889999999999999987 888
Q ss_pred EEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---------------
Q 004207 658 SCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------------- 721 (768)
Q Consensus 658 Sgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--------------- 721 (768)
||+.|..-+|||+|+|.++..+.++ ..|..|.|+|+|-.+++|+.|++++|||++.......+.
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 9999999999999999999999864 569999999999999999999999999998876554443
Q ss_pred -----------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 -----------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 -----------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++++|...+..++ .+.+|++.|.++++++++.+|+|++.|.+||+|.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 8899998887766 6789999999999999999999999999999994
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=293.23 Aligned_cols=253 Identities=26% Similarity=0.419 Sum_probs=216.0
Q ss_pred cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 573 (768)
Q Consensus 494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg 573 (768)
.-++.+.++.+.+..+++|+-|.++|+|+.... .+..+.++|...|.|++|+|||+.||+|
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-------------------TPLFTCKGHKNWVLCVAWSPDGKKIASG 175 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCC-------------------CcceeecCCccEEEEEEECCCcchhhcc
Confidence 334445566777889999999999999954322 3567788999999999999999999999
Q ss_pred eCCCcEEEEECCCCeEE-EEeccCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207 574 GHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (768)
Q Consensus 574 s~Dg~I~VWdl~t~~~~-~tl~~h~~~V~sl~fsp-----dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla 647 (768)
+.||.|++||.++++.+ ..+.+|...|++++|.| .+++|++++.||+|+|||+..+.+ +..+.+|..+|+||.
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTASVTCVR 254 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-EEEeccCccceEEEE
Confidence 99999999999988765 67899999999999976 578999999999999999987664 899999999999999
Q ss_pred EeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----------------------------------------------
Q 004207 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---------------------------------------------- 681 (768)
Q Consensus 648 fsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---------------------------------------------- 681 (768)
|-- ..++++|+.|++|++|+...|.+.+++++
T Consensus 255 wGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 255 WGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred EcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 974 45899999999999998765432221110
Q ss_pred ----------------------------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc------
Q 004207 682 ----------------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------ 721 (768)
Q Consensus 682 ----------------------------------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------ 721 (768)
..-|..+.|+|++.++++++.|..|++||.++++....++
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V 412 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV 412 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence 1125779999999999999999999999999987766554
Q ss_pred -------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 -------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 -------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++++|++.+.++. .+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 413 YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 413 YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 8999999988876 6889999999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=283.53 Aligned_cols=222 Identities=28% Similarity=0.453 Sum_probs=199.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
++-..+.+|.++|.|+.|+|+|..|++|+.|.++++||+.+..+.++.++|..+|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCC----CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEE
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~----g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llag 700 (768)
.++++...+.+.+|...|++++|.|- +..+|++++.||.|+|||+..+.++..+.+ ...|+|++|--+ ++++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99999888999999999999999873 234788999999999999999999999886 456999999875 689999
Q ss_pred EcCCeEEEEECCCceEeeecc-----------------------------------------------------------
Q 004207 701 AIENYISILDVETQVCRLKLQ----------------------------------------------------------- 721 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~----------------------------------------------------------- 721 (768)
+.|++|++|+...+.+...+.
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999998765444332
Q ss_pred --eeEEeecCCCc--eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 --TLELWNMTENK--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 --~I~iwd~~~~~--~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++.+|+....+ +..+.+|...|+.+.|+||+++||++|-|..|++||
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 78888865443 336779999999999999999999999999999997
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.5e-32 Score=302.97 Aligned_cols=252 Identities=23% Similarity=0.406 Sum_probs=217.5
Q ss_pred cccCccccCCCCEEEeecCCCcEEEeecCCCC--------C-------CCCccccccccCCCceeeEEEEecCCCCCeEE
Q 004207 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------D-------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (768)
Q Consensus 496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~--------d-------~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~s 560 (768)
.+.+..+.+..+.+|.|-.|..|++|...... . ..+......+. ..-...+++.+|.++|+.
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~---~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDD---DSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccc---cCCceeEEeecCCCceee
Confidence 44556677788899999999999999554211 0 01111122222 222345568899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC
Q 004207 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (768)
Q Consensus 561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~ 640 (768)
+.|+|+.++|++|+.|++|++|.+.+..++..+.+|..+|+++.|+|.|-||||+|.|++.++|..+... +++.+.+|-
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghl 535 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHL 535 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998754 599999999
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
+.|.|+.|||+.. ++++|+.|.+|++||+.+|..++.|.+ .++|.+++|+|+|.+|++|+.|+.|.+||+.++..+.
T Consensus 536 sDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~- 613 (707)
T KOG0263|consen 536 SDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK- 613 (707)
T ss_pred cccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh-
Confidence 9999999999966 777999999999999999999999986 5679999999999999999999999999998876543
Q ss_pred cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 720 LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 720 ~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+.+|.+.|.+|.|+.+|.+||+||.|.+|++||
T Consensus 614 ---------------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 614 ---------------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred ---------------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 3458999999999999999999999999999997
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.98 E-value=2.2e-30 Score=261.63 Aligned_cols=263 Identities=19% Similarity=0.315 Sum_probs=228.2
Q ss_pred ccccCCCCCceEEEEecCCC-Cccc-------ccCccccCCCCEEEeecCCCcEEEeecCCC-CCCCCccccccccCCCc
Q 004207 473 TLQHNGASSKSLLMFGSDGM-GSLT-------SAPNQLTDMDRFVDDGSLDDNVESFLSPDD-ADPRDRVGRSAEVGKGF 543 (768)
Q Consensus 473 ~l~~s~s~~~~~l~~~~~~~-~~~~-------~~~~~l~~~~~~latGS~D~~v~~w~~~~~-~d~~~~~~~~~~~~~~~ 543 (768)
..+.+++.+..+++|..... ..++ +-..++.+.+.+||+|+.|....+|..... .++
T Consensus 68 r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g-------------- 133 (343)
T KOG0286|consen 68 RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG-------------- 133 (343)
T ss_pred CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccc--------------
Confidence 46678888999999998765 2222 226678999999999999999999955422 111
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEE
Q 004207 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVR 622 (768)
Q Consensus 544 ~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIr 622 (768)
.....+.+.+|++.+.||.|-. ...|+|++.|.++.+||++++..+..+.+|.+.|.++.++| +++.|++|+.|++.+
T Consensus 134 ~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 134 NVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred cceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 1233466889999999999987 55788999999999999999999999999999999999999 899999999999999
Q ss_pred EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEE
Q 004207 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILA 699 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~lla 699 (768)
|||++.+. ++++|.+|...|.+|+|+|+|. -|++|++|+++++||+|....+..+.+ ..+|++++|+..|++|++
T Consensus 213 lWD~R~~~-c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa 290 (343)
T KOG0286|consen 213 LWDVRSGQ-CVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA 290 (343)
T ss_pred eeeccCcc-eeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence 99999985 4999999999999999999986 677999999999999999988888876 456899999999999999
Q ss_pred EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|..|..+.+||.-..+.+ ..+.+|++.|+||..+|||.-|+|||.|..|+||.
T Consensus 291 gy~d~~c~vWDtlk~e~v----------------g~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 291 GYDDFTCNVWDTLKGERV----------------GVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eecCCceeEeeccccceE----------------EEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999997655443 34569999999999999999999999999999995
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.98 E-value=2e-30 Score=260.75 Aligned_cols=267 Identities=25% Similarity=0.367 Sum_probs=219.1
Q ss_pred CccccCCCCCceEEEEecCCC-------------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccc
Q 004207 472 PTLQHNGASSKSLLMFGSDGM-------------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (768)
Q Consensus 472 ~~l~~s~s~~~~~l~~~~~~~-------------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~ 538 (768)
++...++++++.+++|..... |.+.+....+...+.+..++|+|+++++|+...+
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g------------ 95 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG------------ 95 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC------------
Confidence 356678889999999986643 3455556666777778888999999999955432
Q ss_pred cCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC--CCCEEEEEEcCC--CCEEEE
Q 004207 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPS--LSRLAT 614 (768)
Q Consensus 539 ~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h--~~~V~sl~fspd--g~~LaT 614 (768)
+....|.+|...|.+++|++|.+.|++|+.|++|++|++.. .+..++..+ .+.|+|++|+|+ ..+|++
T Consensus 96 -------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 96 -------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred -------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 34567889999999999999999999999999999999875 555555443 789999999997 789999
Q ss_pred EeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCC
Q 004207 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 694 (768)
Q Consensus 615 gs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~ 694 (768)
+++|++|+|||+++-+. ...+.+|.+.++.++++|||. ++++|+.||.+.+||++.++++..+.+...|.+++|+|+
T Consensus 168 ~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspn- 244 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPN- 244 (315)
T ss_pred ccCCceEEEEccCCcch-hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCC-
Confidence 99999999999998664 788899999999999999987 777999999999999999999999999999999999998
Q ss_pred CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 695 GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 695 ~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+.+++..+..|+|||+++..++..+. +.+ ... ......-...+++|+++|..|++|-.|+.|++|.
T Consensus 245 rywL~~at~~sIkIwdl~~~~~v~~l~-~d~---~g~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 245 RYWLCAATATSIKIWDLESKAVVEELK-LDG---IGP---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ceeEeeccCCceEEEeccchhhhhhcc-ccc---ccc---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 677777777889999999987765543 111 000 1122233456789999999999999999999994
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=7.7e-30 Score=267.19 Aligned_cols=245 Identities=24% Similarity=0.444 Sum_probs=206.0
Q ss_pred ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (768)
Q Consensus 502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V 581 (768)
-.+.++-|.+|+..|.+.+|+ +..|....++.+|..+|.++.|++++.++++|+.+|.|++
T Consensus 104 WtPeGRRLltgs~SGEFtLWN-------------------g~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 104 WTPEGRRLLTGSQSGEFTLWN-------------------GTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred EcCCCceeEeecccccEEEec-------------------CceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEe
Confidence 345678899999999999993 3344445667899999999999999999999999999999
Q ss_pred EECCCCeEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207 582 WCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 582 Wdl~t~~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs 660 (768)
|+..-.. +..+.. |...|++++|+|+...|+||+.||+|+|||....+. .+.+.+|.-.|.|++|||... ++++++
T Consensus 165 Wqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kg-Liasgs 241 (464)
T KOG0284|consen 165 WQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKG-LIASGS 241 (464)
T ss_pred cccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccc-eeEEcc
Confidence 9976443 444444 458999999999999999999999999999987665 567799999999999999955 888999
Q ss_pred CCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc------------------
Q 004207 661 NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------------ 721 (768)
Q Consensus 661 ~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------------ 721 (768)
.|..|++||.++++|+.++.. ...|..+.|++++++|++++.|..+++||+++.+....++
T Consensus 242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence 999999999999999998875 5669999999999999999999999999998543322221
Q ss_pred --------eeEEeecCCCceE-E-eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 --------TLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 --------~I~iwd~~~~~~~-~-l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|..|.+...+.+ . -.+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred eeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 6667776633333 2 348999999999999999999999999999993
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=4e-28 Score=244.18 Aligned_cols=231 Identities=16% Similarity=0.228 Sum_probs=195.5
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
....+.+++.|.++.+|....+ +...-..++.+.+|...|..+..++||.+.++++.|+++++||+
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~d--------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSD--------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCceEEEcccceEEEEEEeccC--------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 4568899999999999965443 12223457788999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee-cCCCCeEEEEEeCCC-CeEEEEEeCC
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK-EDLLCSCDNN 662 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~-~h~~~V~slafsp~g-~~lLaSgs~D 662 (768)
.+++....|.+|...|.+++|++|.+.+++|+.|++|++|++..... ..... .+.+-|.|+.|+|+. +.+|++++.|
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 99999999999999999999999999999999999999999986432 33322 237889999999985 5688899999
Q ss_pred CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207 663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK 741 (768)
Q Consensus 663 g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~ 741 (768)
++|++||+++.+....+.+ .+.++.+.++|||...++|+.||.+.+||++.+++... ..|..
T Consensus 172 ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys-----------------l~a~~ 234 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS-----------------LEAFD 234 (315)
T ss_pred ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe-----------------ccCCC
Confidence 9999999999888877765 45689999999999999999999999999988766433 35888
Q ss_pred CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 742 LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 742 ~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|.+++|+|+.-+| ++..+..|+|||
T Consensus 235 ~v~sl~fspnrywL-~~at~~sIkIwd 260 (315)
T KOG0279|consen 235 IVNSLCFSPNRYWL-CAATATSIKIWD 260 (315)
T ss_pred eEeeEEecCCceeE-eeccCCceEEEe
Confidence 99999999976555 455566799997
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.4e-27 Score=269.95 Aligned_cols=256 Identities=26% Similarity=0.470 Sum_probs=217.7
Q ss_pred cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 573 (768)
Q Consensus 494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg 573 (768)
+..+....+...+.++++++.|+.+++|......+ .....+.+|...|.+++|+||+++++++
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~ 221 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGSYLLSG 221 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCcEEEEe
Confidence 44444566677888999999999999996622210 2334457999999999999999999999
Q ss_pred eCCCcEEEEEC-CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207 574 GHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (768)
Q Consensus 574 s~Dg~I~VWdl-~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g 652 (768)
+.|++|+|||+ ..+..+.++++|...|++++|+|+++++++|+.|++|+|||+++++. +..+.+|...|++++|++++
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-~~~l~~hs~~is~~~f~~d~ 300 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-VRKLKGHSDGISGLAFSPDG 300 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-EEeeeccCCceEEEEECCCC
Confidence 99999999999 55689999999999999999999999999999999999999999664 89999999999999999998
Q ss_pred CeEEEEEeCCCcEEEEECCCCe--eEEEEecC--C-CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc------
Q 004207 653 EDLLCSCDNNSEIRYWSINNGS--CAGVFKCQ--S-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------ 721 (768)
Q Consensus 653 ~~lLaSgs~Dg~I~iWDl~sg~--~i~~~~~~--~-~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------ 721 (768)
. +|++++.|+.|+|||+.++. ++..+... . .++++.|+|++.++++++.|+.+++||+....+.....
T Consensus 301 ~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~ 379 (456)
T KOG0266|consen 301 N-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV 379 (456)
T ss_pred C-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc
Confidence 7 55577889999999999998 55665542 2 57999999999999999999999999998764333221
Q ss_pred ----------------------eeEEeecCCCceE-EeccC-CCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 004207 722 ----------------------TLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK 768 (768)
Q Consensus 722 ----------------------~I~iwd~~~~~~~-~l~~H-~~~I~sla~spdg~~LaSgs--~DG~V~IWD 768 (768)
.|.+||..++..+ .+.+| ...|..++|++...++++++ .|+.|++|+
T Consensus 380 ~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 380 RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred eeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 8899999865444 67789 88999999999999999998 799999995
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=2.3e-27 Score=235.17 Aligned_cols=241 Identities=23% Similarity=0.370 Sum_probs=202.8
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
..-+|++++.|.+||+|....+ .+..++....+.|..+.+.||++.||+++. -.|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG-------------------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTG-------------------ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcC-------------------eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence 4568899999999999955433 356667777788999999999999999986 57999999
Q ss_pred CCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207 585 ESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 585 ~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D 662 (768)
.+++ ++.++++|+..|++|.|..+|+.++||++||+++|||++...+ .+.+ .|..+|++|..+|+...|| +|+.+
T Consensus 69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~-qR~~-~~~spVn~vvlhpnQteLi-s~dqs 145 (311)
T KOG0315|consen 69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC-QRNY-QHNSPVNTVVLHPNQTELI-SGDQS 145 (311)
T ss_pred cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-chhc-cCCCCcceEEecCCcceEE-eecCC
Confidence 8865 5889999999999999999999999999999999999998543 3444 4779999999999977555 99999
Q ss_pred CcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------
Q 004207 663 SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------------- 721 (768)
Q Consensus 663 g~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------------- 721 (768)
|.|++||+....+.+.+.. ...|.++.+.|+|..++++...|..++|++-+......+.
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 9999999998877766543 4568899999999999999999999999986542221111
Q ss_pred ------------eeEEeecCCC--ceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ------------TLELWNMTEN--KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ------------~I~iwd~~~~--~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+++||+.++- ..+.+.+|...+..++||.|+.||+||+.|+.+++||
T Consensus 226 d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 8999998876 2235779999999999999999999999999999997
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=259.99 Aligned_cols=215 Identities=30% Similarity=0.480 Sum_probs=195.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q 004207 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP 629 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~ 629 (768)
.+.+.+|..+.|+.|++.||||+.+|.++||+..+...+.++.+|+..|.++.|+|. +..||||+.||+|++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 467789999999999999999999999999999999999999999999999999996 568999999999999999975
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
. ++..+.+|...|..++|||+|. +|+|++.|.+-++||++++..+.-..+ ..+|.+++|+++|..+++|+.|..-+|
T Consensus 252 ~-~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 252 T-PLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred c-chhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 4 4889999999999999999988 566999999999999999887766665 566999999999999999999999999
Q ss_pred EECCCceEeeecc-------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeC-CCCEEEEEECC
Q 004207 709 LDVETQVCRLKLQ-------------------------TLELWNMTENKTL-TLSAHDKLVSSLAAST-VNGMVASASHD 761 (768)
Q Consensus 709 wD~~t~~~~~~~~-------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~sp-dg~~LaSgs~D 761 (768)
||++++.++..+. +++|||++....+ ++.+|.+.|+.|+|+| .|.+|+|+|.|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 9999998876654 8999999876554 7889999999999998 67899999999
Q ss_pred CcEEEeC
Q 004207 762 KCVKIWK 768 (768)
Q Consensus 762 G~V~IWD 768 (768)
++++||.
T Consensus 410 ~t~kiWs 416 (459)
T KOG0272|consen 410 NTVKIWS 416 (459)
T ss_pred cceeeec
Confidence 9999994
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-27 Score=245.79 Aligned_cols=261 Identities=20% Similarity=0.333 Sum_probs=228.2
Q ss_pred ccccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207 473 TLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (768)
Q Consensus 473 ~l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~ 544 (768)
.+...++++.++.+|..... ++.++-.+.++..+.+++++|.|-.+.+|+.. ..
T Consensus 121 ~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~------------------~~ 182 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD------------------TF 182 (406)
T ss_pred eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH------------------HH
Confidence 45566778889999987654 34445577788888999999988888888432 12
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW 624 (768)
+..++.+.+|...|.+++|-|-|.+|++++.|.+|+.|++.++-++.++.+|...|..++.+.||.++++|+.|.+|++|
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 45567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeeEEEeecCCCCeEEEEEeCC--------------CCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEE
Q 004207 625 DTENPDYSLRTFTGHSTTVMSLDFHPS--------------KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 689 (768)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~slafsp~--------------g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~ 689 (768)
-+.++.+ ...+..|..+|.|++|.|. +..++++++.|++|++||+.++.|+.++.++ .-|..++
T Consensus 263 ~~~t~~~-k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 263 VVATKQC-KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred Eeccchh-hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence 9998764 6788889999999999772 2358889999999999999999999999875 4599999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 690 FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 690 fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|+|.|.||+++..|+++++||+.+..|... +.+|..-|++++|+.+..+++||+-|.++++|.
T Consensus 342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~----------------~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 342 FSPGGKYILSCADDKTLRVWDLKNLQCMKT----------------LEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EcCCCeEEEEEecCCcEEEEEeccceeeec----------------cCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999999999999999999888543 338999999999999999999999999999995
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=1.8e-27 Score=245.62 Aligned_cols=223 Identities=22% Similarity=0.453 Sum_probs=201.8
Q ss_pred ceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 004207 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (768)
Q Consensus 543 ~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIr 622 (768)
..++..+.+.+|.+.|.|+++.|...+|++|+.|++|+|||+.++.+..++.+|...|..|++++...||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEE
Q 004207 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags 701 (768)
.||++..+. ++.+.+|-+.|.|++.+|.-+ +|++|+.|.+++|||+|+...+.++.+ ...|..+.+.|....+++++
T Consensus 219 CwDLe~nkv-IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEYNKV-IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechhhhh-HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999998776 899999999999999999855 777999999999999999999999985 56799999999989999999
Q ss_pred cCCeEEEEECCCceEeeecc------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEE
Q 004207 702 IENYISILDVETQVCRLKLQ------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 756 (768)
Q Consensus 702 ~Dg~I~IwD~~t~~~~~~~~------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~La 756 (768)
.|++|++||++.++....+. .++.|++..+..+ .+.+|...|++++.+.|+ +++
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~ 375 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLV 375 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEE
Confidence 99999999998876544332 6788888887765 577999999999988764 788
Q ss_pred EEECCCcEEEeC
Q 004207 757 SASHDKCVKIWK 768 (768)
Q Consensus 757 Sgs~DG~V~IWD 768 (768)
+|+++|.+.+||
T Consensus 376 ~G~dng~~~fwd 387 (460)
T KOG0285|consen 376 SGGDNGSIMFWD 387 (460)
T ss_pred EcCCceEEEEEe
Confidence 999999999997
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=4e-27 Score=264.60 Aligned_cols=244 Identities=25% Similarity=0.344 Sum_probs=202.5
Q ss_pred cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 573 (768)
Q Consensus 494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg 573 (768)
+-.+....+.+..+||.++|.|++||+|.. .++..+..+++|..+|.++.|+|-|-|||||
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl-------------------~t~s~~V~y~GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSL-------------------DTWSCLVIYKGHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeec-------------------ccceeEEEecCCCcceeeEEecCCceEEEec
Confidence 444556677889999999999999999933 2345677889999999999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (768)
Q Consensus 574 s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~ 653 (768)
+.|++.++|..+...+++.+.+|-..|.|+.|+|+..|++|||.|.+||+||+.++.. ++.|.||.++|++|+|+|+|.
T Consensus 512 s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999886 999999999999999999987
Q ss_pred eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEe------
Q 004207 654 DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW------ 726 (768)
Q Consensus 654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iw------ 726 (768)
.|++|+.|+.|++||+.+++.+..+.. .+.|.++.|+.+|+.|++++.|+.|++||+...........+...
T Consensus 591 -~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~ 669 (707)
T KOG0263|consen 591 -YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQ 669 (707)
T ss_pred -eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccc
Confidence 677999999999999999999887765 456899999999999999999999999999765443111111111
Q ss_pred --ecCCCceEEeccCCCCeeEEEEeCCCCEEEEE
Q 004207 727 --NMTENKTLTLSAHDKLVSSLAASTVNGMVASA 758 (768)
Q Consensus 727 --d~~~~~~~~l~~H~~~I~sla~spdg~~LaSg 758 (768)
+....-+..+..-..+|.+|.|.-..-.|++|
T Consensus 670 ~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 670 ENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 01111122444556689999998765444444
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=3e-26 Score=231.85 Aligned_cols=229 Identities=24% Similarity=0.406 Sum_probs=199.0
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
..+.|+++|.||.+-+|++... ..++.++-....|..|+|+|.|+++|+|+-|....||++
T Consensus 66 Dsr~ivSaSqDGklIvWDs~Tt-------------------nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTT-------------------NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccc-------------------cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 4678999999999999955333 345666777788999999999999999999999999999
Q ss_pred CCC------eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 585 ESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 585 ~t~------~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
.+. ...+.+.+|++.+.|+.|-+| ..|+|+|.|.++.+||++++.. +..|.+|.+.|.+|++.|...+.|++
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-TQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-EEEecCCcccEEEEecCCCCCCeEEe
Confidence 865 455778999999999999985 5789999999999999999876 89999999999999999955568889
Q ss_pred EeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEec
Q 004207 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS 737 (768)
Q Consensus 659 gs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~ 737 (768)
|+.|+..++||+|.+.++..|.+ ...|.+++|.|+|.-+++|+.|++.++||++....+. +|. -.
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a------~ys--------~~ 270 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELA------VYS--------HD 270 (343)
T ss_pred cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEe------eec--------cC
Confidence 99999999999999999999986 5679999999999999999999999999999865432 222 11
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 738 AHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 738 ~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.-...|++|+|+..|++|++|..|.++.|||
T Consensus 271 ~~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 271 SIICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred cccCCceeEEEcccccEEEeeecCCceeEee
Confidence 2235699999999999999999999999998
No 16
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.6e-25 Score=231.11 Aligned_cols=245 Identities=29% Similarity=0.516 Sum_probs=208.4
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW 582 (768)
.+.+.++++++.|+.+.+|...... ....+..|...|.++.|++++++|++++.||.|++|
T Consensus 18 ~~~~~~l~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 18 SPDGKLLATGSGDGTIKVWDLETGE-------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred cCCCCEEEEeecCcEEEEEEeeCCC-------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 4456789999999999999654321 344566888999999999999999999999999999
Q ss_pred ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 583 dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D 662 (768)
|+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+++++. ...+..|...|.+++|+|++. ++++++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~ 156 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGT-FVASSSQD 156 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcCC-EEEEEcCC
Confidence 9998888888889998999999999988899888899999999997554 666778999999999999854 66677779
Q ss_pred CcEEEEECCCCeeEEEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------------------
Q 004207 663 SEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------- 721 (768)
Q Consensus 663 g~I~iWDl~sg~~i~~~~~~~-~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------- 721 (768)
+.|++||+++++.+..+..+. .+.++.|+|++..+++++.++.|++||+++......+.
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 999999999888888777644 79999999999899999999999999998654433331
Q ss_pred -----eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 -----TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 -----~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+.+|++..+... .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus 237 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 6888998865544 5668889999999999999999999999999997
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.8e-26 Score=229.10 Aligned_cols=262 Identities=21% Similarity=0.324 Sum_probs=209.1
Q ss_pred ccCCCCCceEEEEecCC------------CCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCC
Q 004207 475 QHNGASSKSLLMFGSDG------------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (768)
Q Consensus 475 ~~s~s~~~~~l~~~~~~------------~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~ 542 (768)
..+.+.++.+..|+..+ .+...+..++..+++++|++||+|.++.+|.-. +
T Consensus 30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-----------------~ 92 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-----------------D 92 (312)
T ss_pred EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-----------------C
Confidence 34455566666666552 245667788889999999999999999999332 3
Q ss_pred ceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (768)
Q Consensus 543 ~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t---~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg 619 (768)
-.|+.+..+.+|...|.|++|+++|.|||+|+.|+.|-||.+.. .++...+..|+..|..+.|+|...+|+++|+|.
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 35678999999999999999999999999999999999998863 567889999999999999999999999999999
Q ss_pred cEEEEECCC-C-CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEE
Q 004207 620 TVRVWDTEN-P-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697 (768)
Q Consensus 620 tIrVWDl~t-~-~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~l 697 (768)
+|++|+-.. . -.++.++.+|...|.+++|++.|. .+++|+.|++|+||-..+. ....+...+..+.|. .+.|
T Consensus 173 TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 173 TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccce
Confidence 999998763 2 245789999999999999999986 5669999999999986621 111234678889998 5689
Q ss_pred EEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 004207 698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 768 (768)
Q Consensus 698 lags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd-g~~LaSgs~DG~V~IWD 768 (768)
++++.|+.|++|.......... |++.. ..-..|...|++|.|+|. .+.|++|+.||.|++|.
T Consensus 247 aS~ggD~~i~lf~~s~~~d~p~------~~l~~---~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKESDSPDEPS------WNLLA---KKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred EeccCCCEEEEEEecCCCCCch------HHHHH---hhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 9999999999997653211111 11000 022378899999999995 68999999999999994
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=2.1e-26 Score=245.11 Aligned_cols=235 Identities=17% Similarity=0.317 Sum_probs=201.9
Q ss_pred CceEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEE
Q 004207 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (768)
Q Consensus 481 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~s 560 (768)
+.+.+.|..+ +.+||+|+.||.+++|..... .+.++..|+++|.+
T Consensus 237 dVT~L~Wn~~---------------G~~LatG~~~G~~riw~~~G~--------------------l~~tl~~HkgPI~s 281 (524)
T KOG0273|consen 237 DVTSLDWNND---------------GTLLATGSEDGEARIWNKDGN--------------------LISTLGQHKGPIFS 281 (524)
T ss_pred CcceEEecCC---------------CCeEEEeecCcEEEEEecCch--------------------hhhhhhccCCceEE
Confidence 5666777664 569999999999999954322 35567789999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCe-----------------------------------------EEEEeccCCCC
Q 004207 561 CHFSPDGKLLATGGHDKKAVLWCTESFT-----------------------------------------VKSTLEEHTQW 599 (768)
Q Consensus 561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~-----------------------------------------~~~tl~~h~~~ 599 (768)
+.|+.+|.||++++.|+++.+||..+++ ++.++.+|.+.
T Consensus 282 lKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~ 361 (524)
T KOG0273|consen 282 LKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE 361 (524)
T ss_pred EEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc
Confidence 9999999999999999999999985432 23345679999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC--------CeEEEEEeCCCcEEEEECC
Q 004207 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK--------EDLLCSCDNNSEIRYWSIN 671 (768)
Q Consensus 600 V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g--------~~lLaSgs~Dg~I~iWDl~ 671 (768)
|.++.|+|.+.+|++||.|+|++||....... ...+.+|...|+.+.|+|+| ...+++++.|++|++||+.
T Consensus 362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 362 VNALKWNPTGSLLASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred eEEEEECCCCceEEEecCCCeeEeeecCCCcc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 99999999999999999999999999876554 78889999999999999865 3568899999999999999
Q ss_pred CCeeEEEE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207 672 NGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST 750 (768)
Q Consensus 672 sg~~i~~~-~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp 750 (768)
.+.++++| ++..+|.+++|+|++.++++|+.|+.|.||+..+++..... ...+.|..|+|+.
T Consensus 441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~-----------------~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY-----------------QGTGGIFELCWNA 503 (524)
T ss_pred CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee-----------------cCCCeEEEEEEcC
Confidence 99999999 67889999999999999999999999999998887665433 3456699999999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 004207 751 VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 751 dg~~LaSgs~DG~V~IWD 768 (768)
+|.+|..+-.||.|+|-|
T Consensus 504 ~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLD 521 (524)
T ss_pred CCCEEEEEecCCCceEEE
Confidence 999999999999999864
No 19
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.6e-27 Score=246.36 Aligned_cols=257 Identities=21% Similarity=0.284 Sum_probs=217.7
Q ss_pred CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (768)
Q Consensus 493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS 572 (768)
++..+--..+...+.++|++|.|.+.-+|....+. .++..+++.+|..+|..+.||||.++|++
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~----------------~~kl~~tlvgh~~~V~yi~wSPDdryLla 286 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV----------------HFKLKKTLVGHSQPVSYIMWSPDDRYLLA 286 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc----------------ceeeeeeeecccCceEEEEECCCCCeEEe
Confidence 44444455567788999999999999999654431 25677889999999999999999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC-CCeEEEEEeC
Q 004207 573 GGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHP 650 (768)
Q Consensus 573 gs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~-~~V~slafsp 650 (768)
|+.|..+.+||+.++.+...+. +|...+.+++|.|||..+++|+.|++|..||++... +..+.+.. -.|.+++..+
T Consensus 287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred cCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcC
Confidence 9999999999999999887774 345789999999999999999999999999998543 34444432 4699999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---------
Q 004207 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------- 721 (768)
Q Consensus 651 ~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--------- 721 (768)
||+.+++++ .|..|++|+.++...+..+..+.+|++++++.++.++++.-.+..|.+||++..+.+.++.
T Consensus 365 Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 365 DGKYVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFII 443 (519)
T ss_pred CCcEEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEE
Confidence 999888655 6999999999988877778888999999999999999999999999999998654433222
Q ss_pred -------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207 722 -------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 722 -------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD 768 (768)
.|+||+..+++++ ++.+|...|+||+|+|.. .+||++|+||+|+||.
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 8999999988876 688999999999999977 5899999999999994
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=239.91 Aligned_cols=254 Identities=16% Similarity=0.267 Sum_probs=215.3
Q ss_pred CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (768)
Q Consensus 493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS 572 (768)
+.-.+.+..+++.+.++++|+.|+++++|+...+ ....++.+|...|..+++|+-..||++
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs 210 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFS 210 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEE
Confidence 4455667888999999999999999999965433 345677899999999999999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207 573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (768)
Q Consensus 573 gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g 652 (768)
++.|+.|+.||++..+.++.+.+|-..|+|++.+|.-..|+||+.|.++||||+++... +..+.+|..+|.++.+.|..
T Consensus 211 ~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~d 289 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTD 289 (460)
T ss_pred ecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999998654 89999999999999999886
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc----------
Q 004207 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------- 721 (768)
Q Consensus 653 ~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~---------- 721 (768)
.. +++|+.|++|++||++.|+...++.+ ...+.+++.+|....+++++.| .|+-|++..+.....+.
T Consensus 290 pq-vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 290 PQ-VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLS 367 (460)
T ss_pred Cc-eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeee
Confidence 64 45999999999999999988777765 5568999999986655555554 58888887765544422
Q ss_pred --------------eeEEeecCCCceEEec---------cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 --------------TLELWNMTENKTLTLS---------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 --------------~I~iwd~~~~~~~~l~---------~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+.+||..++..+... ..+..|++.+|...+..|++|..|.+|++|+
T Consensus 368 ~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 368 VNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 7888998887655211 2345799999999999999999999999995
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.7e-26 Score=245.93 Aligned_cols=254 Identities=21% Similarity=0.321 Sum_probs=206.7
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
+.++++|+.|...++|...+...... ............. +. ...+..|++++|+.+|.+||+|+.||.++||+..
T Consensus 191 ~~llasg~~~s~ari~~l~e~~~~~~-~q~~lrh~~~~~~---~s-~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~ 265 (524)
T KOG0273|consen 191 DGLLASGSGDSTARIWNLLENSNIGS-TQLVLRHCIREGG---KS-VPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD 265 (524)
T ss_pred hhhhhccCCccceeeeeehhhccccc-hhhhhhhhhhhhc---cc-CCccCCcceEEecCCCCeEEEeecCcEEEEEecC
Confidence 34889999999999997654211000 0000000000000 01 1223569999999999999999999999999964
Q ss_pred CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (768)
Q Consensus 586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I 665 (768)
+..+.++..|.++|.++.|+..|+||++++.|+++.+||..++.. ...+.-|..+-..|.|-.+. -|++++.|+.|
T Consensus 266 -G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i 341 (524)
T KOG0273|consen 266 -GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSND--EFATSSTDGCI 341 (524)
T ss_pred -chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecCc--eEeecCCCceE
Confidence 678889999999999999999999999999999999999998775 66777788877889998664 47799999999
Q ss_pred EEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----------------------
Q 004207 666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----------------------- 721 (768)
Q Consensus 666 ~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----------------------- 721 (768)
+|+.+....++.++.+ ++.|.++.|.|.+..|++++.|++++||......+...+.
T Consensus 342 ~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 342 HVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred EEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence 9999998888888875 6779999999999999999999999999987665544433
Q ss_pred -----------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 -----------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 -----------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+|++||+..+.++ ++..|..+|.+|+|+|+++|||+|+.||.|+||+
T Consensus 422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 8999999988776 6779999999999999999999999999999996
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=2.6e-26 Score=233.12 Aligned_cols=249 Identities=17% Similarity=0.278 Sum_probs=210.2
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D 576 (768)
+....+++.+.++++|+.|..|.+|+...+- +.+..+++|.++|..+.|.+|+..|++++.|
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDC------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccc------------------cceeeeccccceeEeeeeccCCCEEEEecCC
Confidence 3344556678899999999999999654331 2244566999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l 655 (768)
++|++||+++++.++.+++|...|+++.-+.-| .++.+++.|++++|||+++.+. +.++. ....++++.|...+..+
T Consensus 112 k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~-~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE-NKYQLTAVGFKDTSDQV 189 (338)
T ss_pred ceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-cceeEEEEEecccccce
Confidence 999999999999999999999999999854444 4678889999999999997554 55554 35679999999887766
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee----cc---------
Q 004207 656 LCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQ--------- 721 (768)
Q Consensus 656 LaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~----~~--------- 721 (768)
+ +|+-|+.|++||++...+.+++.+ ...|+.+..++++.++++-+.|+++++||++......+ +.
T Consensus 190 ~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 190 I-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred e-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 6 899999999999999999999987 45699999999999999999999999999976532222 21
Q ss_pred --------------------eeEEeecCC-CceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 722 --------------------TLELWNMTE-NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 722 --------------------~I~iwd~~~-~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
.+.+||... .-++.+.+|.+.|++++|+|...+|.+++.|.+|++
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 788999877 445588999999999999999999999999999976
No 23
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-26 Score=252.66 Aligned_cols=235 Identities=21% Similarity=0.341 Sum_probs=213.0
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
++.+++.+.++.++-..|.|.+|+.... ..++.+.-..-+|.++.|-.-.+++++|+.|..
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyetq-------------------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~ 78 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYETQ-------------------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQ 78 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEecccc-------------------eeeeeeeecccchhhheeeeccceEEEecCCce
Confidence 4556777889999999999999976443 345556666778999999999999999999999
Q ss_pred EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
|+||+..+++.+..++.|.+.|.||+.+|.-.+++|+|.|-+|++||.+....+..++.+|...|.+|+|+|.....|++
T Consensus 79 IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 79 IRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred EEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEE
Q 004207 659 CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLT 735 (768)
Q Consensus 659 gs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~--~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~ 735 (768)
|+-|++|+||.+.+..+..++.+ ..+|.+++|-+.+ .++++|+.|.+|+|||..+..|+..
T Consensus 159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T---------------- 222 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT---------------- 222 (794)
T ss_pred eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH----------------
Confidence 99999999999999999999886 5679999998754 4899999999999999999887654
Q ss_pred eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 736 LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 736 l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.+|...|..++|+|.-.+|+|||+||+|+||+
T Consensus 223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred hhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 449999999999999999999999999999996
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=255.00 Aligned_cols=206 Identities=32% Similarity=0.529 Sum_probs=182.6
Q ss_pred EEEecC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 548 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (768)
Q Consensus 548 ~~~l~~-H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW 624 (768)
...+.. |...|+|+.|+++|++|++++.|+.+++|+..+.+ ....+.+|...|.+++|+|++.++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 444444 47899999999999999999999999999998777 777888999999999999999999999999999999
Q ss_pred ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcC
Q 004207 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~D 703 (768)
|++.....++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+..+ ..|++++|++++.+|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966656789999999999999999999 68889999999999999999999999874 579999999999999999999
Q ss_pred CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 704 NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 704 g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~--~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.|+|||+.++... ....+..+.. .++++.|+|++.+|++++.|+.|++||
T Consensus 310 ~~i~vwd~~~~~~~--------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 310 GTIRVWDLETGSKL--------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD 362 (456)
T ss_pred ccEEEEECCCCcee--------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence 99999999987632 0112224443 499999999999999999999999997
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=4.8e-28 Score=248.69 Aligned_cols=218 Identities=22% Similarity=0.428 Sum_probs=188.3
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
.+..+++|..|.+|++|+.. .+...+.+.+|++.|.|+.| |.+.|++|+.|.+|+|||+
T Consensus 206 DD~kiVSGlrDnTikiWD~n-------------------~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKN-------------------SLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDV 264 (499)
T ss_pred cchhhhcccccCceEEeccc-------------------cHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEec
Confidence 35578999999999999432 23446778899999999999 6779999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe--eEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~--~~~~~~~h~~~V~slafsp~g~~lLaSgs~D 662 (768)
++++++.++..|...|..+.|+ ..+++|++.|.+|.|||+..+.. +.+.+.||...|..+.|+. .++++++.|
T Consensus 265 ~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgD 339 (499)
T KOG0281|consen 265 NTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGD 339 (499)
T ss_pred cCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCC
Confidence 9999999999999999999998 45999999999999999987652 2367889999999999984 378899999
Q ss_pred CcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207 663 SEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK 741 (768)
Q Consensus 663 g~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~ 741 (768)
.+|++|++.++++++++.++ .+|.|+.+. +..+++|++|++|++||+..+.|... +.+|+.
T Consensus 340 RTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRv----------------LeGHEe 401 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV----------------LEGHEE 401 (499)
T ss_pred ceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHH----------------HhchHH
Confidence 99999999999999999864 456666554 56899999999999999988876443 449999
Q ss_pred CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 742 LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 742 ~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
-|.|+.|. .+.|++|+.||+|+|||
T Consensus 402 LvRciRFd--~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 402 LVRCIRFD--NKRIVSGAYDGKIKVWD 426 (499)
T ss_pred hhhheeec--CceeeeccccceEEEEe
Confidence 99999997 67899999999999997
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.4e-27 Score=242.59 Aligned_cols=238 Identities=24% Similarity=0.404 Sum_probs=207.7
Q ss_pred cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 573 (768)
Q Consensus 494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg 573 (768)
+..+..+.+++...++++++.|.+|++|+...+ .....+++|++.|.+|+|+..|++||++
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-------------------~~e~~LrGHt~sv~di~~~a~Gk~l~tc 168 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETG-------------------ELERSLRGHTDSVFDISFDASGKYLATC 168 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccch-------------------hhhhhhhccccceeEEEEecCccEEEec
Confidence 334445556777889999999999999966443 2256788999999999999999999999
Q ss_pred eCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207 574 GHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (768)
Q Consensus 574 s~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g 652 (768)
+.|-.+++||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++.+ +.++.+|..-|..++.+.||
T Consensus 169 SsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c-v~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC-VKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred CCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee-EEeccCchHhEEEEEecCCe
Confidence 9999999999887 678888899999999999999999999999999999999999765 99999999999999999997
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCC---------------CEEEEEEcCCeEEEEECCCceE
Q 004207 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL---------------GRILAAAIENYISILDVETQVC 716 (768)
Q Consensus 653 ~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~---------------~~llags~Dg~I~IwD~~t~~~ 716 (768)
. ++++|+.|.+|++|-+.++.|...+.. +..|.+++|.|.. .++++++.|++|++||+.++.|
T Consensus 248 t-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c 326 (406)
T KOG0295|consen 248 T-IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC 326 (406)
T ss_pred e-EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence 5 999999999999999999988777664 5668888887741 3788888899999999888766
Q ss_pred eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
. +++.+|.+.|..++|+|.|+||+++.+|++++|||
T Consensus 327 L----------------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 327 L----------------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred E----------------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 3 46679999999999999999999999999999997
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=1.6e-25 Score=241.01 Aligned_cols=240 Identities=22% Similarity=0.368 Sum_probs=195.9
Q ss_pred EEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004207 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (768)
Q Consensus 509 latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~ 588 (768)
+++|+.|.+|.+| .+..|+....++.|..-|.|+.|+|||.+||+++.||+|.|||-++++
T Consensus 163 i~T~sdDn~v~ff-------------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 163 IATGSDDNTVAFF-------------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred EEeccCCCeEEEe-------------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence 5667777777766 456677778889999999999999999999999999999999999999
Q ss_pred EEEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe----------------------------------
Q 004207 589 VKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---------------------------------- 631 (768)
Q Consensus 589 ~~~tl~---~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~---------------------------------- 631 (768)
.+..+. +|.+.|++|.|+||+..|+|++.|.+++|||+.+.+.
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in 303 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN 303 (603)
T ss_pred EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence 999997 8999999999999999999999999999999975432
Q ss_pred --------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee----------------------------
Q 004207 632 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---------------------------- 675 (768)
Q Consensus 632 --------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~---------------------------- 675 (768)
.+..+.+|...|+++..++++. .|++|+.||.|.-||..++..
T Consensus 304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~ 382 (603)
T KOG0318|consen 304 YLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW 382 (603)
T ss_pred EecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence 1234568999999999999986 555999999999999864321
Q ss_pred ---EEEEec---------------------------------------------------CCCeeEEEEecCCCEEEEEE
Q 004207 676 ---AGVFKC---------------------------------------------------QSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 676 ---i~~~~~---------------------------------------------------~~~i~sl~fsp~~~~llags 701 (768)
++.+.. .-...+++++|++.++++|+
T Consensus 383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG 462 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG 462 (603)
T ss_pred CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec
Confidence 011100 00124678899999999999
Q ss_pred cCCeEEEEECCCceEeeecc---------------------------eeEEeecCCCceE--EeccCCCCeeEEEEeCCC
Q 004207 702 IENYISILDVETQVCRLKLQ---------------------------TLELWNMTENKTL--TLSAHDKLVSSLAASTVN 752 (768)
Q Consensus 702 ~Dg~I~IwD~~t~~~~~~~~---------------------------~I~iwd~~~~~~~--~l~~H~~~I~sla~spdg 752 (768)
.|+.|+||.+.......... .+.+||..+.+.. .+.-|...|.||+|+|+.
T Consensus 463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 99999999997754221110 7888998877664 344599999999999999
Q ss_pred CEEEEEECCCcEEEeC
Q 004207 753 GMVASASHDKCVKIWK 768 (768)
Q Consensus 753 ~~LaSgs~DG~V~IWD 768 (768)
.+|||||.|-.|.||+
T Consensus 543 ~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 543 KLVATGSLDTNVIIYS 558 (603)
T ss_pred eEEEeccccceEEEEE
Confidence 9999999999999995
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3e-26 Score=254.92 Aligned_cols=232 Identities=24% Similarity=0.374 Sum_probs=200.2
Q ss_pred CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEE
Q 004207 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW 582 (768)
Q Consensus 504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VW 582 (768)
..+.++++||.|.++++|...+. ......+....+|+..|.+++++..+. +|+++|.|++|++|
T Consensus 375 ~~g~llat~sKD~svilWr~~~~---------------~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W 439 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNN---------------CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW 439 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCC---------------cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence 45569999999999999966222 122234555679999999999977554 79999999999999
Q ss_pred ECCCCeE-----E----EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207 583 CTESFTV-----K----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (768)
Q Consensus 583 dl~t~~~-----~----~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~ 653 (768)
++...+. + .+...|...|+||+++|+.++|||||.|++.+||+++... ...++.+|...|.||.|++...
T Consensus 440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEeccccc
Confidence 9876221 1 1335799999999999999999999999999999999655 4899999999999999999854
Q ss_pred eEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc
Q 004207 654 DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK 732 (768)
Q Consensus 654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~ 732 (768)
+++||+.|++|+||.+.+++|+.+|.+ ...|..+.|-.++..|++++.||-|++|++.+..|..
T Consensus 519 -~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~-------------- 583 (775)
T KOG0319|consen 519 -LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM-------------- 583 (775)
T ss_pred -eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh--------------
Confidence 888999999999999999999999995 5668999999999999999999999999999988854
Q ss_pred eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 733 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 733 ~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++..|.+.|++++.++.+.+++||+.||.|.+|+
T Consensus 584 --tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 584 --TLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred --hhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 4459999999999999999999999999999995
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=3.3e-26 Score=232.41 Aligned_cols=205 Identities=26% Similarity=0.470 Sum_probs=188.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
++..+.+|.+.|+++.|+|+|.+||+|+.|..|.+|++. ..+-..++++|+++|..+.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 455678999999999999999999999999999999954 3455678889999999999999999999999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~ 705 (768)
+++++. ++.+.+|...|.+++-...|..++++++.|+++++||+|...+++++.....++++.|...+..+++|+-|+.
T Consensus 119 ~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 999886 8889999999999997777888999999999999999999999999988889999999999999999999999
Q ss_pred EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|++||++.....+ ++.+|.+.|+.+..+++|.++.+-+.|.+|++||
T Consensus 198 ikvWd~r~~d~~~----------------~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd 244 (338)
T KOG0265|consen 198 IKVWDLRKNDGLY----------------TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWD 244 (338)
T ss_pred eeeeccccCcceE----------------EeecccCceeeEEeccCCCccccccccceEEEEE
Confidence 9999998766543 4569999999999999999999999999999997
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2.5e-26 Score=245.59 Aligned_cols=238 Identities=19% Similarity=0.300 Sum_probs=197.3
Q ss_pred cccccCccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207 494 SLTSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (768)
Q Consensus 494 ~~~~~~~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS 572 (768)
+-+++.+.+-+ ...++.+++.|+.|++|.+.++. ..++++.+|..+|.+++|+.+|..|++
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------------------RCLRTFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCc------------------ceehhhhcchhhhhhhhccccCCeeee
Confidence 44455555555 78899999999999999665431 457889999999999999999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207 573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (768)
Q Consensus 573 gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~ 651 (768)
++.|+.|++||+++|+++..+.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++. +..+..|-+.|..+.|-++
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDE 353 (503)
T ss_pred eecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccC
Confidence 99999999999999999998864 4578999999987 8999999999999999999885 7888889999999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCee--------------------------------EEEEec-----------------C
Q 004207 652 KEDLLCSCDNNSEIRYWSINNGSC--------------------------------AGVFKC-----------------Q 682 (768)
Q Consensus 652 g~~lLaSgs~Dg~I~iWDl~sg~~--------------------------------i~~~~~-----------------~ 682 (768)
+.. +++.++|++|+||+.+.... +..+.. .
T Consensus 354 g~r-FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 354 GRR-FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred Cce-EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 875 55888899999999874321 112211 1
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECC
Q 004207 683 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHD 761 (768)
Q Consensus 683 ~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~D 761 (768)
+..+.+.|+|+|.+|++|..||.+.+||.++.+.+. .+.+|+..+..+.|+|.. ..||||+.|
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~----------------~lkah~~~ci~v~wHP~e~Skvat~~w~ 496 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS----------------KLKAHDQPCIGVDWHPVEPSKVATCGWD 496 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh----------------ccccCCcceEEEEecCCCcceeEecccC
Confidence 234568888998888888889988888888755433 445899999999999975 689999999
Q ss_pred CcEEEeC
Q 004207 762 KCVKIWK 768 (768)
Q Consensus 762 G~V~IWD 768 (768)
|.|++||
T Consensus 497 G~Ikiwd 503 (503)
T KOG0282|consen 497 GLIKIWD 503 (503)
T ss_pred ceeEecC
Confidence 9999997
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.8e-24 Score=240.79 Aligned_cols=296 Identities=22% Similarity=0.327 Sum_probs=231.2
Q ss_pred CCccccCCCCCceEEEEecCCCCccc----------ccCccccCCCCEEEeecCCCcEEEeecCCCC----------CCC
Q 004207 471 RPTLQHNGASSKSLLMFGSDGMGSLT----------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------DPR 530 (768)
Q Consensus 471 ~~~l~~s~s~~~~~l~~~~~~~~~~~----------~~~~~l~~~~~~latGS~D~~v~~w~~~~~~----------d~~ 530 (768)
+..+...++++-+..+|..++...+. +...-+.....-+.+-+.||.+.+|.....+ ++.
T Consensus 156 DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~ 235 (893)
T KOG0291|consen 156 DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGS 235 (893)
T ss_pred CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccc
Confidence 33566777778888888776653211 1111122233345678899999999554211 111
Q ss_pred CccccccccCC----Cce-eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEE
Q 004207 531 DRVGRSAEVGK----GFT-FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605 (768)
Q Consensus 531 ~~~~~~~~~~~----~~~-~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~f 605 (768)
+......+... .+. ......+......|+|++|++..+.||+|-..|...+|.+....+++.+.-...+|..+.|
T Consensus 236 ~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~ 315 (893)
T KOG0291|consen 236 DDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSF 315 (893)
T ss_pred ccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEe
Confidence 11111111110 111 1112334444578999999999999999999999999999999999999877788999999
Q ss_pred cCCCCEEEEEeCC-CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CC
Q 004207 606 SPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS 683 (768)
Q Consensus 606 spdg~~LaTgs~D-gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~ 683 (768)
+..|..|+.|+.. |.+-||++.+..+ +....+|...+++++++|||. ++++|++||.|+|||..++-|+.+|.. ..
T Consensus 316 N~tGDWiA~g~~klgQLlVweWqsEsY-VlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts 393 (893)
T KOG0291|consen 316 NSTGDWIAFGCSKLGQLLVWEWQSESY-VLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTS 393 (893)
T ss_pred cccCCEEEEcCCccceEEEEEeeccce-eeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCC
Confidence 9999999998765 7999999998776 667788999999999999987 777999999999999999999999975 66
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---------------------------eeEEeecCCCceE-E
Q 004207 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------------------------TLELWNMTENKTL-T 735 (768)
Q Consensus 684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~---------------------------~I~iwd~~~~~~~-~ 735 (768)
.|+.+.|+..++.+++.+.||+|+.||+....+...+. .|.+|++.+|+++ .
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 79999999999999999999999999997765544432 8999999999998 5
Q ss_pred eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 736 LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 736 l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.+|+++|.+++|+|++..|+++|.|.+|++||
T Consensus 474 LsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 474 LSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred hcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 779999999999999999999999999999997
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=217.94 Aligned_cols=224 Identities=23% Similarity=0.425 Sum_probs=189.2
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
+.++|+++.|..|++|..... -++.....+ .+|+..|.+|+|+|.|++||+|+.|.++.||.-
T Consensus 27 g~ilAscg~Dk~vriw~~~~~----------------~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSG----------------DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCceEEEEecCCC----------------CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 668999999999999955431 112333333 479999999999999999999999999999975
Q ss_pred C--CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207 585 E--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 585 ~--t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSgs 660 (768)
. +.+++.++++|...|.|++|+++|++||||+.|+.|.||.+.... .++..+..|...|..+.|||... +|++|+
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEec
Confidence 4 467899999999999999999999999999999999999997433 35678899999999999999854 888999
Q ss_pred CCCcEEEEECC---CCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEe
Q 004207 661 NNSEIRYWSIN---NGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTL 736 (768)
Q Consensus 661 ~Dg~I~iWDl~---sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l 736 (768)
.|.+|++|+-. ...++.++..+ ..|.+++|++.|..+++++.|++|+||...+...
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-------------------- 229 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS-------------------- 229 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc--------------------
Confidence 99999999766 34678888764 4799999999999999999999999997653211
Q ss_pred ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 737 SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 737 ~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.-|...++.++|. ...|+|++.|+.|+||.
T Consensus 230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred hhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence 1477889999998 67899999999999984
No 33
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=4.1e-26 Score=226.18 Aligned_cols=245 Identities=18% Similarity=0.237 Sum_probs=212.5
Q ss_pred ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (768)
Q Consensus 502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V 581 (768)
+.+.+.|+.++|.|+.-.+-. +.+-.=+.+|.+|.+.|++.+++.+...-|+++.|-+.+|
T Consensus 25 itp~g~flisa~kd~~pmlr~-------------------g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 25 ITPDGYFLISASKDGKPMLRN-------------------GDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CCCCceEEEEeccCCCchhcc-------------------CCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 467888999999888754431 1122236788999999999999988888999999999999
Q ss_pred EECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (768)
Q Consensus 582 Wdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~ 661 (768)
||.-++..+..+. |..-|.+++|+.|.++|+||+.++.+||||++..+.+...+.+|.+.|..+.|......+| +...
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSad 163 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSAD 163 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEE-eecc
Confidence 9999999998885 8889999999999999999999999999999999888899999999999999998766555 6688
Q ss_pred CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--------------------
Q 004207 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------- 721 (768)
Q Consensus 662 Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------- 721 (768)
|++||+||.+++..+..+....+|+++.++++|. +++.+..+.|.+||..+...+..+.
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAG 242 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCceeEEeccccccceeeccCccccccccccCCCceEEec
Confidence 9999999999999999999999999999999965 5666777889999998876554433
Q ss_pred ----eeEEeecCCCceEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ----TLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ----~I~iwd~~~~~~~~l--~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.++.||..++..+.. .+|.++|.||.|+|+|...++||.||+|+||.
T Consensus 243 ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 677889888877644 69999999999999999999999999999993
No 34
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=1.1e-24 Score=234.58 Aligned_cols=254 Identities=19% Similarity=0.386 Sum_probs=215.9
Q ss_pred CCcccccCccccCCCCEEEeecCCCcEEEeecCCC------------------------------CCCCCccccccccCC
Q 004207 492 MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------ADPRDRVGRSAEVGK 541 (768)
Q Consensus 492 ~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~------------------------------~d~~~~~~~~~~~~~ 541 (768)
.|.+.+....+.+.+.|+|+|...|+||+|..... .++++++++.+-.+.
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS 136 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS 136 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC
Confidence 36777778888999999999999999999964431 244555665555555
Q ss_pred CceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207 542 GFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (768)
Q Consensus 542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt 620 (768)
+.. +-.+.+|...|.+|+|-|... .++||+.|++|.+|+-.-.+...++..|...|.|++|+|||.+|+|++.||+
T Consensus 137 G~S---vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 137 GNS---VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred CCc---cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 543 445679999999999999877 4999999999999999888999999999999999999999999999999999
Q ss_pred EEEEECCCCCeeEEEee---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC----eeEEEEecC
Q 004207 621 VRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG----ATQMRFQPR 693 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~----i~sl~fsp~ 693 (768)
|.+||-.+++. +..+. +|.+.|.+|+|+||+..++ +++.|.+++|||+.+.+++.++..... -..+.|.
T Consensus 214 i~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-- 289 (603)
T KOG0318|consen 214 IYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-- 289 (603)
T ss_pred EEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--
Confidence 99999999886 66665 8999999999999987555 899999999999999999999987544 3456676
Q ss_pred CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 694 LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 694 ~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...|++.+.+|+|.+++...... ...+.+|...|+++..++++.+|++|+.||.|.-||
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~----------------~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSV----------------LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCCh----------------hheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 45899999999999998876542 335669999999999999999999999999999996
No 35
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=253.98 Aligned_cols=220 Identities=24% Similarity=0.365 Sum_probs=185.2
Q ss_pred eEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------------
Q 004207 546 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------- 586 (768)
Q Consensus 546 ~~~~~l~-~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-------------------------------------- 586 (768)
.....+. +|.+.|.|+.||+||+|||+||.|+.|+||.+..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3445566 9999999999999999999999999999997644
Q ss_pred ----------------------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeE
Q 004207 587 ----------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (768)
Q Consensus 587 ----------------------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~ 644 (768)
.+++..+.+|.+.|.+|.|+.+ .+|++++.|+|||+|++.... ++.+|. |...|+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfVT 413 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFVT 413 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCeeE
Confidence 0122345689999999999987 589999999999999999755 477776 999999
Q ss_pred EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---
Q 004207 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--- 721 (768)
Q Consensus 645 slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--- 721 (768)
||+|+|..+++|++|+-||.|+||++...+.+.....+.-|++++|.|+|.+.++|+.+|.+++|+....+......
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99999999999999999999999999998888888888999999999999999999999999999997765443322
Q ss_pred -------------------------------eeEEeecCCCceE-EeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 722 -------------------------------TLELWNMTENKTL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 722 -------------------------------~I~iwd~~~~~~~-~l~~H~~--~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
.|+|+|..+..++ .+.++.. .-....|+.||++|+++++|..|+||
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 7888888655544 4444332 33567889999999999999999999
Q ss_pred C
Q 004207 768 K 768 (768)
Q Consensus 768 D 768 (768)
+
T Consensus 574 ~ 574 (712)
T KOG0283|consen 574 K 574 (712)
T ss_pred e
Confidence 6
No 36
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.5e-26 Score=235.65 Aligned_cols=256 Identities=23% Similarity=0.368 Sum_probs=210.0
Q ss_pred ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 004207 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (768)
Q Consensus 500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I 579 (768)
..+.+.+.|+++||.||.|++|+...+.-. ++..+..-..+--|.++|.|++||.|...||+|+.||.|
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlr-----------KDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLR-----------KDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhh-----------hhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 345567789999999999999988766432 233333344556788999999999999999999999999
Q ss_pred EEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 580 VLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 580 ~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
+||.+.+|.|++.+. .|+..|+|+.|+.|+..+++++.|-+|||.-+.+++. +..+.+|.+.|+...|.++|.+++ +
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-s 365 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-S 365 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-E
Confidence 999999999999886 8999999999999999999999999999999999886 899999999999999999988666 8
Q ss_pred EeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCceEee----------------
Q 004207 659 CDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRL---------------- 718 (768)
Q Consensus 659 gs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~-~~llags~Dg~I~IwD~~t~~~~~---------------- 718 (768)
++.||+|++|+..+.+|+.+|+. ...|.++...|.. ..++++...++|+|.++.......
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEe
Confidence 99999999999999999988875 3446676666644 357777778888887765421111
Q ss_pred -----------ecceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 719 -----------KLQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 719 -----------~~~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
....+.+|...++++. ++..|+..|..++-+|..+.||+-++||.+++|+
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 1114555666666554 5668999999999999999999999999999996
No 37
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=4e-25 Score=219.29 Aligned_cols=199 Identities=20% Similarity=0.407 Sum_probs=178.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe-eEEEeecCCCCeEEE
Q 004207 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL 646 (768)
Q Consensus 568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~-~~~~~~~h~~~V~sl 646 (768)
-+|++++.|.+|++|...+|.+..++.-..+.|+.+...|+++.||+++.- .||+||++++.. ++.++.+|...|++|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 379999999999999999999999998778899999999999999988754 699999998775 789999999999999
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----
Q 004207 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----- 721 (768)
Q Consensus 647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----- 721 (768)
.|..+|+ .+++|++||+++|||+|...+-+.+.+..+|+++..+|+...|+++..+|.|++||+.+..+...+-
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999987 5569999999999999999999999999999999999999999999999999999998875443321
Q ss_pred ---------------------eeEEeecCCCce-------EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ---------------------TLELWNMTENKT-------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ---------------------~I~iwd~~~~~~-------~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...+|++..... ..+.+|.+.|..+.+||++++||++|.|.+|+||+
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 778898765432 25779999999999999999999999999999995
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=2.4e-24 Score=239.75 Aligned_cols=253 Identities=18% Similarity=0.296 Sum_probs=211.9
Q ss_pred CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (768)
Q Consensus 493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS 572 (768)
|...+.+..+.+.+.+|++|+.|+.|++|+...+ .++.++..|+..|+.+.|+..|+.+++
T Consensus 349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-------------------fC~vTFteHts~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-------------------FCFVTFTEHTSGVTAVQFTARGNVLLS 409 (893)
T ss_pred cccceeeEEECCCCcEEEeccCCCcEEEEeccCc-------------------eEEEEeccCCCceEEEEEEecCCEEEE
Confidence 4555667778899999999999999999955332 357888999999999999999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEeccCC-CCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCCeeEEEeecCCCCeEEEEEeC
Q 004207 573 GGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650 (768)
Q Consensus 573 gs~Dg~I~VWdl~t~~~~~tl~~h~-~~V~sl~fspdg~~LaTgs~Dg-tIrVWDl~t~~~~~~~~~~h~~~V~slafsp 650 (768)
++-||+|+.||+...+..+++.... -...||+..|.|.+++.|+.|. .|.||++.+|+. +..+.||.++|.+++|+|
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l~f~~ 488 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGLSFSP 488 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcceeeEEcc
Confidence 9999999999999999999887543 2467889999999999998887 799999999886 899999999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207 651 SKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMT 729 (768)
Q Consensus 651 ~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~ 729 (768)
.+. +|++++.|.+|++||+-. ...+.++.....+..++|.|+|..+++++.||.|.+||.........+...+ |+.
T Consensus 489 ~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk--D~~ 565 (893)
T KOG0291|consen 489 DGS-LLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK--DLS 565 (893)
T ss_pred ccC-eEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh--hcc
Confidence 987 888999999999999864 3467778888999999999999999999999999999998876554333111 222
Q ss_pred CCceE--E----eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 730 ENKTL--T----LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 730 ~~~~~--~----l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.++.. . -.+....++++++++||.+|++||....|+||+
T Consensus 566 ~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 566 GGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred ccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 22221 1 113346789999999999999999999999986
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.6e-25 Score=250.23 Aligned_cols=235 Identities=22% Similarity=0.418 Sum_probs=204.2
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
...+++...+|.++-..|.|.+|++.-+ ..+..|..|.++|..++|+|...+|++|+.|.+
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDyk 74 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYK 74 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccE
Confidence 3456777889999999999999966443 235667899999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
|+||+.++.+++.++.+|-+.|..+.|++...+++++|.|-|||||++.+.++ +..++||...|.|..|||..+ ++++
T Consensus 75 IkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptED-lIVS 152 (1202)
T KOG0292|consen 75 IKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTED-LIVS 152 (1202)
T ss_pred EEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCccc-eEEE
Confidence 99999999999999999999999999999999999999999999999998775 999999999999999999855 8889
Q ss_pred EeCCCcEEEEECCC--------C-------------------ee--EEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 659 CDNNSEIRYWSINN--------G-------------------SC--AGVFKC-QSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 659 gs~Dg~I~iWDl~s--------g-------------------~~--i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
++-|-+|+|||+.. + .+ .+++.+ ..+|..++|+|....|++|+.|..|++
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence 99999999999852 1 01 122232 456899999999999999999999999
Q ss_pred EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|.+... ..|.++ +..+|.+.|.++-|+|..++|+|.|+|++|+|||
T Consensus 233 Wrmnet---------KaWEvD-----tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 233 WRMNET---------KAWEVD-----TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred EEeccc---------cceeeh-----hhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 988763 345543 4569999999999999999999999999999998
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=2.6e-24 Score=223.41 Aligned_cols=263 Identities=17% Similarity=0.239 Sum_probs=220.3
Q ss_pred CceEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEE
Q 004207 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (768)
Q Consensus 481 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~s 560 (768)
+-++..|.......+ ...++++.+++++|+.|....+|....+. ....+.+|++.|+|
T Consensus 54 DdS~~tF~~H~~svF---avsl~P~~~l~aTGGgDD~AflW~~~~ge-------------------~~~eltgHKDSVt~ 111 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVF---AVSLHPNNNLVATGGGDDLAFLWDISTGE-------------------FAGELTGHKDSVTC 111 (399)
T ss_pred ccceeehhhcCCceE---EEEeCCCCceEEecCCCceEEEEEccCCc-------------------ceeEecCCCCceEE
Confidence 444555544433333 34455688999999999999999665442 34567899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC
Q 004207 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (768)
Q Consensus 561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~ 640 (768)
+.|+.||.+||||+.+|.|+||...++.....+...-..|.-++|+|.+.+|+.|+.||.|.+|.+.+... .+.+.+|.
T Consensus 112 ~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~ 190 (399)
T KOG0296|consen 112 CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHN 190 (399)
T ss_pred EEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-eeEecCCC
Confidence 99999999999999999999999999999888875667788999999999999999999999999998644 78899999
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee
Q 004207 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718 (768)
Q Consensus 641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~ 718 (768)
.++++=.|.|+|++++ ++..||+|++||..++.++..+.. +....++.++..+..++.|..++.+++....+++.+.
T Consensus 191 ~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 9999999999988555 899999999999999999888874 4456778888887778888888877777766665443
Q ss_pred ecc------------------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207 719 KLQ------------------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 762 (768)
Q Consensus 719 ~~~------------------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG 762 (768)
... +|.|||+...++.....|...|+.+.|-+ ..+|++++.||
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc
Confidence 221 89999999999888889999999999998 78999999999
Q ss_pred cEEEeC
Q 004207 763 CVKIWK 768 (768)
Q Consensus 763 ~V~IWD 768 (768)
.|++||
T Consensus 349 ~v~~wD 354 (399)
T KOG0296|consen 349 KVRQWD 354 (399)
T ss_pred eEEeee
Confidence 999997
No 41
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=226.95 Aligned_cols=268 Identities=15% Similarity=0.245 Sum_probs=215.1
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
..++...+.++++||.|..|+++....-- .+.....+...+.....-.++++..|.++|+++.|+|....|++|+.|++
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildverml-aks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERML-AKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhh-hhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence 44556678899999999999999654211 01111112222222223457889999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE--EeecCCCCeEEEEEeCCCCe
Q 004207 579 AVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~--~~~~h~~~V~slafsp~g~~ 654 (768)
|++||...-...+.++ ....+|.+|.|+|.|.+|+.|..-.++++||+++-.+.+. .-..|.+.|+++.+++.++
T Consensus 196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~- 274 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS- 274 (430)
T ss_pred EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-
Confidence 9999987533332221 2356899999999999999999999999999998665332 2346899999999999977
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc----------
Q 004207 655 LLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------- 721 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~---------- 721 (768)
+.++++.||.|++||--+++|+.++.. ...|++..|..++.++++.+.|..|++|.+.++.++..+.
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~ 354 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKH 354 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhh
Confidence 777999999999999999999998864 4568999999999999999999999999999988766543
Q ss_pred ---------------------eeEEeecCCCceEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ---------------------TLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ---------------------~I~iwd~~~~~~~~--l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+..||.++...+. ..+|.+.+..+.-+|.+.-|++||.|-.+++|-
T Consensus 355 rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 355 RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 67778887766553 348999999999999999999999999999993
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=5.3e-26 Score=243.13 Aligned_cols=221 Identities=20% Similarity=0.361 Sum_probs=187.9
Q ss_pred eEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrV 623 (768)
+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|.+++|+.+|..|++++.|++|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45788899999999999999 888999999999999999876 8999999999999999999999999999999999999
Q ss_pred EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc
Q 004207 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~ 702 (768)
||+++|.+ +..+. ....++|+.|+|++.++|++|+.|+.|+.||+|+++.+..+.. -+.|..+.|-+++.++++++.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999986 44444 2457899999999988999999999999999999998888765 467999999999999999999
Q ss_pred CCeEEEEECCCceEeeecc--------------------------eeEEeecCC----CceEEeccCC--CCeeEEEEeC
Q 004207 703 ENYISILDVETQVCRLKLQ--------------------------TLELWNMTE----NKTLTLSAHD--KLVSSLAAST 750 (768)
Q Consensus 703 Dg~I~IwD~~t~~~~~~~~--------------------------~I~iwd~~~----~~~~~l~~H~--~~I~sla~sp 750 (768)
|+.|+||+.+....+.... .+.++.... .+...+.+|. +.-..|.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 9999999998764332221 344444322 2222455664 4566789999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 004207 751 VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 751 dg~~LaSgs~DG~V~IWD 768 (768)
||.+|++|+.||.|.+||
T Consensus 443 DG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred CCCeEEeecCCccEEEee
Confidence 999999999999999997
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1e-24 Score=214.78 Aligned_cols=248 Identities=18% Similarity=0.285 Sum_probs=210.3
Q ss_pred cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (768)
Q Consensus 496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~ 575 (768)
++....+...++|..+++.|.+|++|+...+ ..++++.+|...|..++.+.|...|++|+.
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------------------~liktYsghG~EVlD~~~s~Dnskf~s~Gg 79 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------------------ALIKTYSGHGHEVLDAALSSDNSKFASCGG 79 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeeccccc-------------------ceeeeecCCCceeeeccccccccccccCCC
Confidence 3445556778889999999999999954333 357888999999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-eeEEEeecCCCCeEEEEEeCCCCe
Q 004207 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~-~~~~~~~~h~~~V~slafsp~g~~ 654 (768)
|+.|.+||+.+++.++.+.+|.+.|+.|+|+.+...+++|+.|.+|++||.++.. .+++++......|.+|... ++
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~h 156 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EH 156 (307)
T ss_pred CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---cc
Confidence 9999999999999999999999999999999999999999999999999998654 4577888788899999998 45
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------
Q 004207 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------- 721 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------- 721 (768)
.+++|+.||+++.||++.|...... ...+|++++|+++++..++++.|++|++.|-++++....+.
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred EEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 7889999999999999998875543 35889999999999999999999999999998876544332
Q ss_pred --------------eeEEeecCCCceE-EeccCCCC-eeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 722 --------------TLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 722 --------------~I~iwd~~~~~~~-~l~~H~~~-I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
.+.+||+.....+ .+..|... |++++++|.-..|+++...+ +.+|
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred cccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 8999999888776 45566666 78999999887777776544 3344
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=1.1e-23 Score=255.85 Aligned_cols=235 Identities=21% Similarity=0.270 Sum_probs=189.4
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl 584 (768)
..+|++++.|++|++|+.... ..+..+.+|.+.|++++|+| ++.+|++|+.|++|+|||+
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~-------------------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARS-------------------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCC-------------------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence 567888888888888854321 34566789999999999997 7899999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC
Q 004207 585 ESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fs-pdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg 663 (768)
.++..+..+..+ ..|.++.|+ +++.+|++|+.|++|++||+++....+..+.+|...|.++.|. ++. .|++++.|+
T Consensus 606 ~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~ 682 (793)
T PLN00181 606 NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDN 682 (793)
T ss_pred CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCC
Confidence 999988888755 579999995 4689999999999999999988765567788999999999997 444 677899999
Q ss_pred cEEEEECCCC------eeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc---e
Q 004207 664 EIRYWSINNG------SCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK---T 733 (768)
Q Consensus 664 ~I~iWDl~sg------~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~---~ 733 (768)
+|++||++.+ .++..+.. ...+..++|++++.+|++|+.|+.|++|+......... |...... .
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s------~~~~~~~~~~~ 756 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS------YKFKTIDPVSG 756 (793)
T ss_pred EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE------EecccCCcccc
Confidence 9999999743 45666665 34578899999999999999999999999876533211 1111111 1
Q ss_pred EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 734 LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 734 ~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.....|...|.+++|++++.+|++|+.||.|+|||
T Consensus 757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 757 LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 12345677899999999999999999999999996
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.7e-25 Score=219.41 Aligned_cols=232 Identities=21% Similarity=0.328 Sum_probs=194.4
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL 581 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~V 581 (768)
..+++.+++++-||++++|..... -.++..++.|...|.+|.|++ ++..+++++.|++|++
T Consensus 70 e~~e~~~~~a~GDGSLrl~d~~~~------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKL 131 (311)
T KOG0277|consen 70 ENHENQVIAASGDGSLRLFDLTMP------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKL 131 (311)
T ss_pred CCCcceEEEEecCceEEEeccCCC------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEe
Confidence 457888999999999999953222 236788899999999999999 5667888999999999
Q ss_pred EECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207 582 WCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 582 Wdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs 660 (768)
|+....+.+.++.+|...|+...|+|. .++|+++|.|+++++||++.....+. +..|...|.|+.|+.-..++++||+
T Consensus 132 W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 132 WDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred ecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecC
Confidence 999999999999999999999999994 78999999999999999998765344 8889999999999998899999999
Q ss_pred CCCcEEEEECCCC-eeEEEEecC-CCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEec
Q 004207 661 NNSEIRYWSINNG-SCAGVFKCQ-SGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLS 737 (768)
Q Consensus 661 ~Dg~I~iWDl~sg-~~i~~~~~~-~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~ 737 (768)
.|+.|++||+++- ..+.++..+ -.|..+.|+|...- |++++.|-+++|||....... ..+..
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~---------------~e~~~ 275 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA---------------IETVD 275 (311)
T ss_pred CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh---------------hhhhh
Confidence 9999999999974 345566543 34899999997554 667888999999998754321 11233
Q ss_pred cCCCCeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 004207 738 AHDKLVSSLAASTV-NGMVASASHDKCVKIWK 768 (768)
Q Consensus 738 ~H~~~I~sla~spd-g~~LaSgs~DG~V~IWD 768 (768)
.|.+-|..+.|++- ..++|+++.|+.++||+
T Consensus 276 ~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 276 HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccceEEeccccccccCceeeecccccceeeec
Confidence 68888999999874 57999999999999996
No 46
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=8.4e-24 Score=241.26 Aligned_cols=203 Identities=18% Similarity=0.283 Sum_probs=167.7
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCc
Q 004207 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRT 620 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~-------~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~Dgt 620 (768)
.+.+|.+.|++++|+| ++.+|++|+.|++|+|||+.+. +.+..+.+|...|.+|+|+|++ .+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4679999999999999 8899999999999999999764 3567889999999999999975 69999999999
Q ss_pred EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC--eeEEEEecCCCEEE
Q 004207 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRIL 698 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~--i~sl~fsp~~~~ll 698 (768)
|+|||++++.. +..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+.. +..+.|.+++..++
T Consensus 150 VrIWDl~tg~~-~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 150 VNVWDVERGKA-VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEECCCCeE-EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 99999998764 777888999999999999976 677999999999999999998888776543 45678999888888
Q ss_pred EEE----cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207 699 AAA----IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 768 (768)
Q Consensus 699 ags----~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD 768 (768)
+++ .|+.|++||+++..... ...+ ..+...+....|++++.+|++++ .||.|++||
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~-----~~~~---------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPY-----STVD---------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCce-----eEec---------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence 765 37889999987643211 1111 12334566678999999999888 599999996
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=1e-23 Score=217.68 Aligned_cols=218 Identities=32% Similarity=0.550 Sum_probs=187.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
..+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45678999999999999999999999999999999999888888889999999999999999999999999999999997
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS 707 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~ 707 (768)
++. +..+..|...|.++.|++++. ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++.++++++.|+.|+
T Consensus 83 ~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GEC-VRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred ccc-eEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 654 667778888999999999854 777777899999999998888887773 55799999999977777777799999
Q ss_pred EEECCCceEeeecc-------------------------eeEEeecCCCceEEe-ccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 708 ILDVETQVCRLKLQ-------------------------TLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 708 IwD~~t~~~~~~~~-------------------------~I~iwd~~~~~~~~l-~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
+||+++......+. .+.+||+..+..... ..|...|.+++|++++.++++++.|
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 99997654322221 788999887666644 4888899999999998888888889
Q ss_pred CcEEEeC
Q 004207 762 KCVKIWK 768 (768)
Q Consensus 762 G~V~IWD 768 (768)
|.|++||
T Consensus 241 ~~i~i~~ 247 (289)
T cd00200 241 GTIRVWD 247 (289)
T ss_pred CcEEEEE
Confidence 9999996
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=8.7e-26 Score=232.15 Aligned_cols=260 Identities=23% Similarity=0.370 Sum_probs=213.3
Q ss_pred CCccccCCCCCceEEEEecCCCC------cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207 471 RPTLQHNGASSKSLLMFGSDGMG------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (768)
Q Consensus 471 ~~~l~~s~s~~~~~l~~~~~~~~------~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~ 544 (768)
....+.+|.++.++-+|...... ++.-+...+.-.++++++||.|.+|++|+...+
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg------------------ 267 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG------------------ 267 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC------------------
Confidence 34567889999999999987652 333345556667889999999999999966544
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~---~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtI 621 (768)
+.++++-+|...|..+.|+ ..++++++.|.+|.|||+.... +...+.+|...|+.+.|+ .+++++++.|.+|
T Consensus 268 -e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 -EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred -chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 3466778999999999995 6799999999999999987654 335678999999999997 4699999999999
Q ss_pred EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC-CeeEEEEecCCCEEEEE
Q 004207 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAA 700 (768)
Q Consensus 622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~-~i~sl~fsp~~~~llag 700 (768)
++|++.+.++ ++++.+|...|.|+.+. ..++++|+.|.+|++||+..|.|++.+.++. -|.++.|.. ..+++|
T Consensus 343 kvW~~st~ef-vRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSG 416 (499)
T KOG0281|consen 343 KVWSTSTCEF-VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSG 416 (499)
T ss_pred EEEeccceee-ehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeec
Confidence 9999999886 99999999999999886 5588999999999999999999999998754 488999975 489999
Q ss_pred EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.||+|+|||+.+..-..... .+-.+.++..|.+.|..+.|. ...|++++.|.+|.|||
T Consensus 417 aYDGkikvWdl~aaldpra~~-------~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPA-------STLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred cccceEEEEecccccCCcccc-------cchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999998754321110 011122556899999999997 66899999999999997
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=1.2e-23 Score=255.72 Aligned_cols=249 Identities=14% Similarity=0.255 Sum_probs=195.4
Q ss_pred cccccCccccCCCCEEEeecCCCcEEEeecCCCC-CCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEE
Q 004207 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLA 571 (768)
Q Consensus 494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~La 571 (768)
...+....+++.+.++++|+.|+.|++|...... +.. ... ..+..+. +...|.+++|++ ++.+|+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-----------~~~-~~~~~~~-~~~~v~~l~~~~~~~~~la 549 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-----------DIH-YPVVELA-SRSKLSGICWNSYIKSQVA 549 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-----------ccc-cceEEec-ccCceeeEEeccCCCCEEE
Confidence 3344556677788999999999999999653210 000 000 0112222 346799999987 578999
Q ss_pred EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeC
Q 004207 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650 (768)
Q Consensus 572 Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp 650 (768)
+++.||+|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||++++.. +..+..+ ..|.++.|++
T Consensus 550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~ 627 (793)
T PLN00181 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPS 627 (793)
T ss_pred EEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeC
Confidence 999999999999999999999999999999999997 788999999999999999998764 5566544 6799999976
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCe-eEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeec
Q 004207 651 SKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNM 728 (768)
Q Consensus 651 ~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~ 728 (768)
....+|++|+.|+.|++||+++.. .+..+.. ...|.++.|. ++.++++++.|+.|++||+.......
T Consensus 628 ~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~---------- 696 (793)
T PLN00181 628 ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGI---------- 696 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcccc----------
Confidence 655688899999999999998765 3445543 4579999997 56889999999999999987532110
Q ss_pred CCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 729 ~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
....+..+.+|...|.+++|++++.+|++|+.||.|+||+
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 1112335678999999999999999999999999999996
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=1.7e-24 Score=225.56 Aligned_cols=229 Identities=21% Similarity=0.329 Sum_probs=194.0
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC---EEEEEeCCCcEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAVL 581 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~---~LaSgs~Dg~I~V 581 (768)
...+|.+|++||.+++|... | +....+.+|.++|.+++|.-... .|++++.|.++++
T Consensus 114 ~~~~IltgsYDg~~riWd~~-----------------G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 114 ASKWILTGSYDGTSRIWDLK-----------------G---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred cCceEEEeecCCeeEEEecC-----------------C---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 38899999999999999432 2 35677889999999888865333 5999999999999
Q ss_pred EECCCCeEE----EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------------------CeeE
Q 004207 582 WCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYSL 633 (768)
Q Consensus 582 Wdl~t~~~~----~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~------------------------~~~~ 633 (768)
|-.+.++.. ....+|...|-+|...+++..+++|+.|.+|.||+.++. +.++
T Consensus 174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 988766533 334599999999999999999999999999999993210 1245
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
.++.+|..+|.+|.|++. ..+++++.|.+|+.||+.++.++..+.+...+.++.++|....|++|+.|..|++||.++
T Consensus 254 vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred EEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 678899999999999983 467899999999999999999999999999999999999999999999999999999988
Q ss_pred ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207 714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD 768 (768)
+.... ....+.+|.+.|.+|.|+|.. ..|++|+.|+++++||
T Consensus 332 ~~gs~-------------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 332 GDGSV-------------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred CCCce-------------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 63211 123677999999999999987 4788999999999998
No 51
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=5.6e-24 Score=213.06 Aligned_cols=250 Identities=16% Similarity=0.175 Sum_probs=202.9
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D 576 (768)
+..+.+.-.+.+|.+++.|.++.+|.+..+ ..+-++.+|++.|+||..+-+.+++++|+.|
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nG-------------------erlGty~GHtGavW~~Did~~s~~liTGSAD 73 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNG-------------------ERLGTYDGHTGAVWCCDIDWDSKHLITGSAD 73 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCC-------------------ceeeeecCCCceEEEEEecCCcceeeecccc
Confidence 334445556789999999999999976554 2467788999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC------CeeEEEeecCCCCeEE
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENP------DYSLRTFTGHSTTVMS 645 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-----DgtIrVWDl~t~------~~~~~~~~~h~~~V~s 645 (768)
.++++||+++|+++.+++. ..+|..+.|++++++++.+.. .+.|.++|++.. +.++..+..+.+.++.
T Consensus 74 ~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~ 152 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS 152 (327)
T ss_pred ceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence 9999999999999999974 568999999999998877654 368999999832 2345666778899999
Q ss_pred EEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-EEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc--
Q 004207 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-- 721 (768)
Q Consensus 646 lafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-- 721 (768)
+-|.|-++ .|++|.+||.|.+||++++.... ... +...|+.+.++++..++++++.|.+-++||+.+..+...+.
T Consensus 153 a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 153 ALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred eeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999987 45599999999999999985443 322 45679999999999999999999999999999987766554
Q ss_pred ------------------------------------eeEEeecC-CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207 722 ------------------------------------TLELWNMT-ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764 (768)
Q Consensus 722 ------------------------------------~I~iwd~~-~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V 764 (768)
..++|++- ..++-.+.+|-++|++|+|+|+|+..++|++||.|
T Consensus 232 ~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 232 RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence 11111111 11122567899999999999999999999999999
Q ss_pred EEe
Q 004207 765 KIW 767 (768)
Q Consensus 765 ~IW 767 (768)
+|.
T Consensus 312 R~h 314 (327)
T KOG0643|consen 312 RLH 314 (327)
T ss_pred EEE
Confidence 984
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.5e-24 Score=232.60 Aligned_cols=236 Identities=22% Similarity=0.338 Sum_probs=196.8
Q ss_pred cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 004207 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 573 (768)
Q Consensus 494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSg 573 (768)
...+....+-...+++++||.|..|++|+... ...++.|.+|.+.|.||+.+|.-.+++|+
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt-------------------~ekV~~FeAH~DyIR~iavHPt~P~vLts 115 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT-------------------GEKVKTFEAHSDYIRSIAVHPTLPYVLTS 115 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEeccc-------------------ceeeEEeeccccceeeeeecCCCCeEEec
Confidence 34455666777889999999999999996543 35688899999999999999999999999
Q ss_pred eCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207 574 GHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (768)
Q Consensus 574 s~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~ 651 (768)
+.|.+|++||.+. ..+..++++|+..|-+|+|+| |.+.|+++|-|+||+||.+..... ..++.+|...|.||++-+.
T Consensus 116 SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~-nfTl~gHekGVN~Vdyy~~ 194 (794)
T KOG0276|consen 116 SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP-NFTLEGHEKGVNCVDYYTG 194 (794)
T ss_pred CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC-ceeeeccccCcceEEeccC
Confidence 9999999999875 568889999999999999999 578999999999999999998664 7889999999999999875
Q ss_pred C-CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207 652 K-EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMT 729 (768)
Q Consensus 652 g-~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~ 729 (768)
| +-.+++|++|.+|+|||..+..|+.++++ ...|..++|+|.-..+++|+.||+|+||+..+.+....+.
T Consensus 195 gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-------- 266 (794)
T KOG0276|consen 195 GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-------- 266 (794)
T ss_pred CCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh--------
Confidence 5 34677999999999999999999999996 4569999999999999999999999999988865543321
Q ss_pred CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 004207 730 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 765 (768)
Q Consensus 730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~ 765 (768)
-.-+.|+|++-.+.++.+++|.++|.|.
T Consensus 267 --------~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 267 --------YGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred --------cCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 1223456666555555666666665554
No 53
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=214.35 Aligned_cols=248 Identities=20% Similarity=0.322 Sum_probs=201.7
Q ss_pred EEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004207 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (768)
Q Consensus 509 latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~ 588 (768)
+++|++...|..|......+.. ......++.++..+.+|.++|+|+++ ++.|+|+|+.|-+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~-------~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGC-------TDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCcccc-------ccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh
Confidence 5678888888877543332111 11223556677888999999999999 69999999999999999999999
Q ss_pred EEEEeccCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 004207 589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (768)
Q Consensus 589 ~~~tl~~h~~~V~sl~fspdg~--~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~ 666 (768)
.+..+..|.+.|+++.|.+.-. .|++|+.||.|.+|+...- ..+.++.+|.+.|+.|++||.++ +.++.+.|+.++
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 9999999999999999998754 8999999999999999876 45899999999999999999987 555777799999
Q ss_pred EEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee-----------------------ccee
Q 004207 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-----------------------LQTL 723 (768)
Q Consensus 667 iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~-----------------------~~~I 723 (768)
+||+-.|+.-.........+.+.|+|.|.+++.+..+ .|-||.+.+...... ...+
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i 231 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWI 231 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceE
Confidence 9999999888777777777779999999988777664 477887765321111 1178
Q ss_pred EEeecCCCceE-EeccCCCCeeEEEE--eCCCCEEEEEECCCcEEEeC
Q 004207 724 ELWNMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 724 ~iwd~~~~~~~-~l~~H~~~I~sla~--spdg~~LaSgs~DG~V~IWD 768 (768)
.+||.....+. .+.+|...|.++.+ .|++.||+|+|.||.|+|||
T Consensus 232 ~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 232 SLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred EEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 88998865554 67799999999984 36678999999999999997
No 54
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.4e-22 Score=232.71 Aligned_cols=206 Identities=16% Similarity=0.227 Sum_probs=159.9
Q ss_pred EEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------EEEEeccCCCCEEEEEEcCCCCE-EEEEe
Q 004207 547 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATSS 616 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWdl~t~~--------~~~tl~~h~~~V~sl~fspdg~~-LaTgs 616 (768)
.+..+.+|.+.|.+|+|+|+ +.+||+|+.|++|+|||+.++. ++..+.+|...|.+|+|+|++.. |++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 56778899999999999996 7899999999999999997542 34567889999999999998775 57899
Q ss_pred CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-eeE-----EEE
Q 004207 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQ-----MRF 690 (768)
Q Consensus 617 ~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~-i~s-----l~f 690 (768)
.|++|+|||++++.. +..+. |...|.+++|+++|. +|++++.|+.|+|||+++++++..+..+.. +.. ..|
T Consensus 146 ~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 146 FDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred CCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 999999999998775 44444 567899999999987 566777899999999999999888876543 222 234
Q ss_pred ecCCCEEEEEEcCC----eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 691 QPRLGRILAAAIEN----YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 691 sp~~~~llags~Dg----~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
++++.+|++++.|+ .|+|||++..... +.. ..+..+.+.+......+++.++++|+.|+.|++
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p-----l~~--------~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSA-----LVT--------MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCc-----eEE--------EEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 58888999988774 6999998853211 111 122233344444444556889999999999999
Q ss_pred eC
Q 004207 767 WK 768 (768)
Q Consensus 767 WD 768 (768)
|+
T Consensus 290 ~e 291 (568)
T PTZ00420 290 YQ 291 (568)
T ss_pred EE
Confidence 96
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.9e-24 Score=209.42 Aligned_cols=219 Identities=21% Similarity=0.361 Sum_probs=189.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
+....+..|.++|.++.|+-||+|.++|+.|.+|++|+...+.+++++.+|...|.+++.+.|...|++|+.|+.|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC--CeeEEEEec-CCCeeEEEEecCCCEEEEEEc
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s--g~~i~~~~~-~~~i~sl~fsp~~~~llags~ 702 (768)
+++++. ++.+.+|.+.|..+.|+.+.. ++++|+.|.+|++||.++ .+++.++.. ...|.++.... ..|++|+.
T Consensus 88 V~TGkv-~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~ 163 (307)
T KOG0316|consen 88 VNTGKV-DRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSV 163 (307)
T ss_pred cccCee-eeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeecc
Confidence 999886 899999999999999998854 888999999999999986 456666653 56788888775 47999999
Q ss_pred CCeEEEEECCCceEeeecc-----------------------eeEEeecCCCceE-EeccCCCCee--EEEEeCCCCEEE
Q 004207 703 ENYISILDVETQVCRLKLQ-----------------------TLELWNMTENKTL-TLSAHDKLVS--SLAASTVNGMVA 756 (768)
Q Consensus 703 Dg~I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~-~l~~H~~~I~--sla~spdg~~La 756 (768)
||+++.||++.+......- ++++.|..+++++ .+.+|.+.-. .++++....+++
T Consensus 164 DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred CCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence 9999999999875443221 7888898888877 5668876544 456666678999
Q ss_pred EEECCCcEEEeC
Q 004207 757 SASHDKCVKIWK 768 (768)
Q Consensus 757 Sgs~DG~V~IWD 768 (768)
+||+||.|++||
T Consensus 244 sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 244 SGSEDGKVYFWD 255 (307)
T ss_pred eccCCceEEEEE
Confidence 999999999997
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-23 Score=231.99 Aligned_cols=237 Identities=20% Similarity=0.331 Sum_probs=204.5
Q ss_pred cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecC-CCCCeEEEEEcCCCCEEEE
Q 004207 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLAT 572 (768)
Q Consensus 494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-H~~~I~sl~fSpdg~~LaS 572 (768)
...+.++.....+.+|++|..+|.|.+|+.... +.+..+.+ |...|-|++|+ +..+.+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-------------------k~~~~~~~~h~~rvg~laW~--~~~lss 275 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-------------------KKTRTLRGSHASRVGSLAWN--SSVLSS 275 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhc-------------------cccccccCCcCceeEEEecc--CceEEE
Confidence 345567777889999999999999999955333 23444556 99999999997 778999
Q ss_pred EeCCCcEEEEECCCCeEEEE-eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207 573 GGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (768)
Q Consensus 573 gs~Dg~I~VWdl~t~~~~~t-l~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~ 651 (768)
|+.|+.|.++|+...+.... +.+|...|+.+.|++|+.+||+|+.|+.|.|||..... .+..+..|.+.|.+++|+|-
T Consensus 276 Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~ 354 (484)
T KOG0305|consen 276 GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPW 354 (484)
T ss_pred ecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCC
Confidence 99999999999988765544 88999999999999999999999999999999996555 47788889999999999999
Q ss_pred CCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE--cCCeEEEEECCCceEeeecceeEEee
Q 004207 652 KEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQTLELWN 727 (768)
Q Consensus 652 g~~lLaSgs--~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags--~Dg~I~IwD~~t~~~~~~~~~I~iwd 727 (768)
...+||+|+ .|+.|++||+.++..+..+.....|+.+.|++..+.|+++. .++.|.||+..+...
T Consensus 355 q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~----------- 423 (484)
T KOG0305|consen 355 QSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL----------- 423 (484)
T ss_pred ccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce-----------
Confidence 888999875 69999999999999999999999999999999988877754 567788888776433
Q ss_pred cCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 728 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 728 ~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 424 -----~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 424 -----VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred -----eeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 235669999999999999999999999999999996
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=4.9e-23 Score=214.80 Aligned_cols=262 Identities=19% Similarity=0.313 Sum_probs=203.9
Q ss_pred CccccCCCCCceEEEEecCCCCcccc----------cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCC
Q 004207 472 PTLQHNGASSKSLLMFGSDGMGSLTS----------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (768)
Q Consensus 472 ~~l~~s~s~~~~~l~~~~~~~~~~~~----------~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~ 541 (768)
...+++++.+....+|...+...+.+ .....+.....+++++.|.++++|....+...
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~------------ 182 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK------------ 182 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh------------
Confidence 35778889999999999887632211 12223444456899999999999965444211
Q ss_pred CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------------CCeEEEEeccC
Q 004207 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-------------------------SFTVKSTLEEH 596 (768)
Q Consensus 542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-------------------------t~~~~~tl~~h 596 (768)
.+.++.-.+|.+.|.|++..++|..+++|+.|..|+||+.. +..++.++.+|
T Consensus 183 ---~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 183 ---VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred ---hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 11122234999999999999999999999999999999832 12356678999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--
Q 004207 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-- 674 (768)
Q Consensus 597 ~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-- 674 (768)
..+|.+|.|++ ...+++++.|.+|++||++++.. +..+.+ ...+.|++.+|. ..+|++|+.|..|++||.|++.
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~-~~~~~~-~ksl~~i~~~~~-~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL-KSTLTT-NKSLNCISYSPL-SKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccc-eeeeec-CcceeEeecccc-cceeeecCCCCceeecCCCCCCCc
Confidence 99999999998 67899999999999999999886 444443 467999999997 4588899999999999998753
Q ss_pred e-EEEEec-CCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC
Q 004207 675 C-AGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV 751 (768)
Q Consensus 675 ~-i~~~~~-~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd 751 (768)
. ...+.+ ..-|.++.|+|...+ |++++.|+++++||+++.. ..+..+.+|.+.|.++.|+.
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---------------~plydI~~h~DKvl~vdW~~- 399 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---------------APLYDIAGHNDKVLSVDWNE- 399 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---------------CcceeeccCCceEEEEeccC-
Confidence 2 234443 445889999998777 6778899999999998843 22445668999999999984
Q ss_pred CCEEEEEECCCcEEEeC
Q 004207 752 NGMVASASHDKCVKIWK 768 (768)
Q Consensus 752 g~~LaSgs~DG~V~IWD 768 (768)
+.+|++||.|.+|+|++
T Consensus 400 ~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRIFK 416 (423)
T ss_pred CceEEeccCcceEEEec
Confidence 67999999999999974
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=8e-23 Score=233.94 Aligned_cols=236 Identities=26% Similarity=0.442 Sum_probs=204.9
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEE-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd 583 (768)
++.++.+|+.|.++++|..... ..+.. +.+|.+.|.+++|...+.+|++|+.|.+++|||
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~-------------------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNG-------------------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred ecCeEEecCCCceeEEeecccc-------------------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 3778999999999999944322 33444 899999999999987788999999999999999
Q ss_pred CCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC
Q 004207 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (768)
Q Consensus 584 l~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg 663 (768)
+.++.+..++.+|.+.|.++...+ .++++|+.|.+|+||++.++.. +..+.+|.+.|.++..+ ..++++|+.|+
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~---~~~lvsgs~d~ 351 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD---EPLLVSGSYDG 351 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec---CCEEEEEecCc
Confidence 999999999999999999998874 4788899999999999998775 88888899999999998 34788999999
Q ss_pred cEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc-eEeeecc--------------------
Q 004207 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQ-------------------- 721 (768)
Q Consensus 664 ~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~-~~~~~~~-------------------- 721 (768)
+|++||+.++++++++.+ ...|.++.+... .++++|+.|++|++||+++. .|+..+.
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~ 430 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSS 430 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEecc
Confidence 999999999999999986 456888888775 78999999999999999998 6665554
Q ss_pred ---eeEEeecCCCceE-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ---TLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ---~I~iwd~~~~~~~-~l~~-H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+|++||..++.++ ++.+ |...|+++++. ...+++++.||.+++||
T Consensus 431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 8999999998877 4445 56889888876 56899999999999997
No 59
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=2e-24 Score=226.67 Aligned_cols=195 Identities=17% Similarity=0.420 Sum_probs=173.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~ 634 (768)
..+|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++.++++|+.+|.|++|+..-.. +.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 4569999999999999999999999999987777667778999999999999999999999999999999987543 44
Q ss_pred EeecC-CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207 635 TFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (768)
Q Consensus 635 ~~~~h-~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~ 712 (768)
.+.+| ...|++++|+|+. ..|++|++||+|+|||....+....+.+ +-.|.++.|+|..+.|++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 44444 4899999999974 4778999999999999998888777776 4569999999999999999999999999999
Q ss_pred CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 713 t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++.|+.. +.+|+..|..+.|++++++|+|+|.|..+++||
T Consensus 253 Sg~cl~t----------------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~D 292 (464)
T KOG0284|consen 253 SGSCLAT----------------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFD 292 (464)
T ss_pred Ccchhhh----------------hhhccceEEEEEEcCCCCeeEEccCCceEEEEe
Confidence 9887654 448999999999999999999999999999997
No 60
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=5.1e-23 Score=229.22 Aligned_cols=251 Identities=24% Similarity=0.370 Sum_probs=207.4
Q ss_pred CCceEEEEecCCCC------cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecC
Q 004207 480 SSKSLLMFGSDGMG------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (768)
Q Consensus 480 ~~~~~l~~~~~~~~------~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (768)
...++..|..+... |--.....+.+.+++|+.|...|.+.+|..... ..+.++++
T Consensus 392 a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-------------------~l~Eti~A 452 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA-------------------SLVETIRA 452 (888)
T ss_pred CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh-------------------hhhhhhhc
Confidence 34566777777542 223335567788889999998888888843222 22455679
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CeE---E-----EEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTV---K-----STLEEHTQWITDVRFSPSLSRLATSSADRT 620 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-----~~~---~-----~tl~~h~~~V~sl~fspdg~~LaTgs~Dgt 620 (768)
|.+.|.+++.+||++.+++|+.|.+|++||.+- +.. + .+++ -...|.|+.+|||+++|+++--|.+
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCe
Confidence 999999999999999999999999999998642 111 1 2222 3567999999999999999999999
Q ss_pred EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEE
Q 004207 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 699 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~lla 699 (768)
|+||=+++-+. ...+-||.-+|.|++.+|++. +++||+.|.+|++|-+.-|.|-+.+.. ...|.++.|.|....+++
T Consensus 532 VkVyflDtlKF-flsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt 609 (888)
T KOG0306|consen 532 VKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT 609 (888)
T ss_pred EEEEEecceee-eeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE
Confidence 99999998776 667788999999999999976 777999999999999999999887765 567899999999888999
Q ss_pred EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++.|+.|+-||....+++. ++.+|...|+|++.+|+|.+++++|+|.+|++|.
T Consensus 610 ~gKD~kvKqWDg~kFe~iq----------------~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 610 CGKDGKVKQWDGEKFEEIQ----------------KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ecCcceEEeechhhhhhhe----------------eeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999988765543 4559999999999999999999999999999995
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.5e-23 Score=219.06 Aligned_cols=231 Identities=21% Similarity=0.304 Sum_probs=191.0
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeC
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGH 575 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~ 575 (768)
+.+..+...++++++|...|.|++|+... ..-+..+.+|..+|..+.|+|. +..|++|+.
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD 131 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKS-------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD 131 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEecccc-------------------HHHHHHHhhccCceeEEEecccCCeEEEecCC
Confidence 34556677899999999999999994211 1124567899999999999994 557889999
Q ss_pred CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~ 654 (768)
|+.+++||+.+......+.+|++.|.|.+|+|- +.+++|||+||+||+||++.....+..+. |..+|..+.+.|.|.
T Consensus 132 d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs- 209 (487)
T KOG0310|consen 132 DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS- 209 (487)
T ss_pred CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC-
Confidence 999999999999887789999999999999995 56899999999999999998754455555 889999999999977
Q ss_pred EEEEEeCCCcEEEEECCCC-eeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc
Q 004207 655 LLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK 732 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg-~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~ 732 (768)
++++++ ...|++||+-+| +.+..+. ++..|+|+++..++..|++++-|+.|++||+.+.+.++.+
T Consensus 210 ~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~------------ 276 (487)
T KOG0310|consen 210 LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW------------ 276 (487)
T ss_pred EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee------------
Confidence 565666 468999999865 4444444 6788999999999999999999999999998776664433
Q ss_pred eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 733 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 733 ~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
.-.++|.+++.+|++..++.|..||.+.+
T Consensus 277 -----~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 277 -----KYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred -----ecccceeeEEecCCCceEEEecccceeee
Confidence 24578999999999999999999998754
No 62
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4.7e-23 Score=219.56 Aligned_cols=264 Identities=21% Similarity=0.329 Sum_probs=205.8
Q ss_pred CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccC--CCceeeEEEEecCCCCCeEEEEEcCCCCEE
Q 004207 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG--KGFTFTEFQLIPASTSKVESCHFSPDGKLL 570 (768)
Q Consensus 493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~l~~H~~~I~sl~fSpdg~~L 570 (768)
|-+.+....+.+.+.++.+++.|++|--|....+.+.+....+. +.. .+..+++-. ++|...|.|++.|+||+||
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccCCCCccc--ccccceeEEEEEcCCCcEE
Confidence 33444555667788899999999999999776655433332221 111 122222222 4899999999999999999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeC
Q 004207 571 ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650 (768)
Q Consensus 571 aSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp 650 (768)
|+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....|++++.|.+|++|+++...+ +.++.+|.+.|.+|+...
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALS 296 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhc
Confidence 9999999999999999999999999999999999998888999999999999999998776 788889999999999887
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCC
Q 004207 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTE 730 (768)
Q Consensus 651 ~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~ 730 (768)
.+ .++++|+.|+++++|++.....+-...+.+.+-|++|-.+ ..+++|+.+|.|.+|++-+.+.+.... ..-
T Consensus 297 re-R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~------~AH 368 (479)
T KOG0299|consen 297 RE-RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSR------LAH 368 (479)
T ss_pred cc-ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEee------ccc
Confidence 64 4787888999999999965443333334567889998876 679999999999999998876654332 111
Q ss_pred CceE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 731 NKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 731 ~~~~--~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+... .-..+...|++|+..|..+++++|+.+|.|++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 1111 1113345899999999999999999999999994
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7.8e-23 Score=203.63 Aligned_cols=206 Identities=20% Similarity=0.344 Sum_probs=171.2
Q ss_pred eeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcE
Q 004207 545 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV 621 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtI 621 (768)
+.+...+.- .+.+..++|++.. +.+++++.||+++|||+.. .+++..+++|...|.+|.|++ +...++++|.|++|
T Consensus 51 i~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 51 IQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred eEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence 444444433 3559999999954 4788899999999999643 467888999999999999998 46678899999999
Q ss_pred EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeeEEEEecCCC-EEE
Q 004207 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLG-RIL 698 (768)
Q Consensus 622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~-~~~i~sl~fsp~~~-~ll 698 (768)
++|+...+.. +.++.+|...|+...|+|....+|++++.|+.+++||++. |+.+. +.. ...+.++.|+.-.. .++
T Consensus 130 KLW~~~r~~S-v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 130 KLWDPNRPNS-VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred EeecCCCCcc-eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEE
Confidence 9999987664 8899999999999999999999999999999999999986 44444 554 44899999987544 577
Q ss_pred EEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207 699 AAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 699 ags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD 768 (768)
+++.|+.|++||++..+. .+..+.+|.-.|..|.|+|.. .+|++++.|-+++|||
T Consensus 208 Tg~vd~~vr~wDir~~r~---------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRT---------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred ecCCCceEEEEehhhccc---------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence 888999999999987542 134567999999999999976 6899999999999997
No 64
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=192.08 Aligned_cols=252 Identities=17% Similarity=0.222 Sum_probs=200.2
Q ss_pred CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (768)
Q Consensus 493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS 572 (768)
..-++..+.+++.+.+.++||...+.++..+++-.+.+.. .+..+.......+.-+.|.+.|+|.+|+|+|.+|++
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 4556677888889999999999999999876655444322 111122223345666789999999999999999999
Q ss_pred EeCCCcEEEEECCCCeE-----EEEeccCCCCEEEEEEcCC----CCEEEEEeC-CCcEEEEECCCCCeeEEEeecCCCC
Q 004207 573 GGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPS----LSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTT 642 (768)
Q Consensus 573 gs~Dg~I~VWdl~t~~~-----~~tl~~h~~~V~sl~fspd----g~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~h~~~ 642 (768)
|+.|++|++.......+ ...+.-|.+.|.+++|-.+ +.+|++++. |..|++-|..++.. +..+.+|.+.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtgh 185 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGH 185 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCccc
Confidence 99999999975543222 2345669999999999653 556777654 66788888877765 7889999999
Q ss_pred eEEEE-EeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 643 VMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 643 V~sla-fsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
|.++- |+ ..+|++|+.|.+|++||++-..++.++.. ...|..++..|.|..+++|-.|....+||++.
T Consensus 186 ilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 186 ILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred EEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 98874 55 56999999999999999999999888763 24588999999999999999999999999998
Q ss_pred ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+..+.. +..|...|.||.|+|...|+++++.|..|++-|
T Consensus 263 ~r~iq~----------------f~phsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 263 GRMIQR----------------FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred Cceeee----------------eCCCccceeEEEeCCCceEEEEecccceEEEee
Confidence 776543 448999999999999999999999999999854
No 65
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.7e-23 Score=219.72 Aligned_cols=225 Identities=23% Similarity=0.379 Sum_probs=185.1
Q ss_pred CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q 004207 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (768)
Q Consensus 542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t---~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D 618 (768)
..+..+.+++..|++.|.-+.||++|+|||+++.|.+..||.+.. .+..+++.+|..+|..|.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 345567788999999999999999999999999999999997654 45678999999999999999999999999999
Q ss_pred CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCE
Q 004207 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR 696 (768)
Q Consensus 619 gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~ 696 (768)
..+++||+.++......-.+|...+.+++|.|||.. +++|+.|+.|..||+. |.....++. ...|.++++.++|.+
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcE
Confidence 999999999988644444456688999999999886 5599999999999997 555555554 245899999999999
Q ss_pred EEEEEcCCeEEEEECCCceEeeecc------------------------eeEEeecCCCceE-EeccCCCC--eeEEEEe
Q 004207 697 ILAAAIENYISILDVETQVCRLKLQ------------------------TLELWNMTENKTL-TLSAHDKL--VSSLAAS 749 (768)
Q Consensus 697 llags~Dg~I~IwD~~t~~~~~~~~------------------------~I~iwd~~~~~~~-~l~~H~~~--I~sla~s 749 (768)
+++.+.|..|++|+.++........ .+++||+.+.+.+ .+.+|+.. |..-||-
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred EEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 9999999999999987764431111 8899999977665 56677653 4444554
Q ss_pred C-CCCEEEEEECCCcEEEeC
Q 004207 750 T-VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 750 p-dg~~LaSgs~DG~V~IWD 768 (768)
- +..++++||+|+.|+||+
T Consensus 449 g~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred CCCcceEEecCCCceEEEEE
Confidence 3 347999999999999996
No 66
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=216.22 Aligned_cols=214 Identities=21% Similarity=0.235 Sum_probs=187.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC------
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------ 628 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t------ 628 (768)
.++|.|+.-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..|+|+.|+-|+.+|+||+.||.|++|++.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 46799999999999999998999999999999999999999999999999999999999999999999998642
Q ss_pred --CCeeEEEeecCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004207 629 --PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 629 --~~~~~~~~~~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~ 705 (768)
...++..+..|.-+|+++...+.+ +..++|++.|.+|++||+..+..+.++.....+.+++.+|-+..+++|+.+|.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence 223578899999999999987763 34677999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCceEeeecceeEEeecCCCceEEeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~--~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|.+.++.........-..+.++....+...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 999988765422211123455566666677889998 999999999999999999999999997
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.4e-23 Score=220.56 Aligned_cols=201 Identities=22% Similarity=0.325 Sum_probs=174.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP 629 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~ 629 (768)
+....+.|++++|..||++||+|...|.|+|||+++...+..+.+|..+|..+.|+|. +..|++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 3344567999999999999999999999999998877788899999999999999995 667888999999999999987
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
.. ...+.+|+..|.|.+|+|-..++++||+.||.|++||++.. ..+.++.++.+|..+.+-|.|..|++++ .+.|+|
T Consensus 144 ~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkV 221 (487)
T KOG0310|consen 144 YV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKV 221 (487)
T ss_pred EE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence 64 67899999999999999999999999999999999999986 8889999999999999999877666655 466888
Q ss_pred EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
||+.++.... ..+..|...|+|+++..++..|++||-|+.|+|||
T Consensus 222 WDl~~G~qll---------------~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 222 WDLTTGGQLL---------------TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred EEecCCceeh---------------hhhhcccceEEEEEeecCCceEeecccccceEEEE
Confidence 8887543211 12234999999999999999999999999999996
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=4.9e-22 Score=210.12 Aligned_cols=260 Identities=16% Similarity=0.246 Sum_probs=214.4
Q ss_pred ccccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207 473 TLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (768)
Q Consensus 473 ~l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~ 544 (768)
+.+..|..+++.++|..... +...+....++.....+.+++.|..|++|.+....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----------------- 294 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----------------- 294 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----------------
Confidence 45566777888888876543 45555677778888899999999999999654432
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVR 622 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~--h~~~V~sl~fspdg~~LaTgs~DgtIr 622 (768)
+...++.|.++|+.+..+|.|+||++++.|++..+.|++++..+..... ..-.+++++|+|||-+|.+|..|+.|+
T Consensus 295 --~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 295 --EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK 372 (506)
T ss_pred --CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence 2345678999999999999999999999999999999999998866543 223589999999999999999999999
Q ss_pred EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC--CeeEEEEecCCCEEEEE
Q 004207 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAA 700 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~--~i~sl~fsp~~~~llag 700 (768)
|||+..+. .+..|.+|.++|.+|+|+.+|. +++++.+|+.|++||+|..+...++.... ++.+++|.+.|.+++++
T Consensus 373 iwdlks~~-~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 373 IWDLKSQT-NVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEcCCcc-ccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 99999877 4888999999999999999865 66688889999999999888777776543 59999999999999999
Q ss_pred EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+.|=.|++++-.+.. |. +...+..|.+..+++.|.....+++++|.|..++|+
T Consensus 451 g~~l~Vy~~~k~~k~----------W~----~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKS----------WT----EIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred cceeEEEEEeccccc----------ce----eeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 888777777754432 11 123455788889999999999999999999999986
No 69
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=9.3e-22 Score=200.24 Aligned_cols=256 Identities=20% Similarity=0.277 Sum_probs=189.6
Q ss_pred CCccccCCCCCceEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEE
Q 004207 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL 550 (768)
Q Consensus 471 ~~~l~~s~s~~~~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 550 (768)
+.++..++.+.++.+.|++. .+.+++.||+|++||+|....... +.. +.
T Consensus 19 d~ev~~pP~DsIS~l~FSP~--------------~~~~~~A~SWD~tVR~wevq~~g~----------------~~~-ka 67 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQ--------------ADNLLAAGSWDGTVRIWEVQNSGQ----------------LVP-KA 67 (347)
T ss_pred ceecCCCcccchheeEeccc--------------cCceEEecccCCceEEEEEecCCc----------------ccc-hh
Confidence 33555666677777777772 357888999999999996654310 011 34
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCC
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTEN 628 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~--~LaTgs~DgtIrVWDl~t 628 (768)
...|.++|.|++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+... .|+|||+|++|+.||++.
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 46899999999999999999999999999999999984 456778999999999987654 899999999999999997
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-EEe--cCCCeeEEEEecCCCEEEEEEcCCe
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK--CQSGATQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~~~--~~~~i~sl~fsp~~~~llags~Dg~ 705 (768)
... +.++. -.+.|++++.. ..+++++..+..|.+|+++++.... .+. ....+.++++..+....+.|+-+|.
T Consensus 147 ~~p-v~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr 221 (347)
T KOG0647|consen 147 SNP-VATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR 221 (347)
T ss_pred CCe-eeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce
Confidence 654 44444 35678888765 3377788889999999998764332 221 2455889999888888899999999
Q ss_pred EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.|..+........+ ++++- ..++. ..+.--.|++|+|+|....|+|+|.||++.+||
T Consensus 222 v~iq~id~~~~~~nF-tFkCH-R~~~~---~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 222 VAIQYIDDPNPKDNF-TFKCH-RSTNS---VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred EEEEecCCCCccCce-eEEEe-ccCCC---CCCceEEecceEeecccceEEEecCCceEEEec
Confidence 999888764221111 01110 00000 000112478899999999999999999999998
No 70
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=1.7e-22 Score=225.21 Aligned_cols=251 Identities=23% Similarity=0.345 Sum_probs=214.2
Q ss_pred cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC
Q 004207 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHD 576 (768)
Q Consensus 498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~-H~~~I~sl~fSpdg~~LaSgs~D 576 (768)
....+.+.+.++.+.+...-+++|..+.+ + .++..++ |.+||.-++|+|.+.++++|+.|
T Consensus 66 ta~~l~~d~~~L~~a~rs~llrv~~L~tg-----k--------------~irswKa~He~Pvi~ma~~~~g~LlAtggaD 126 (775)
T KOG0319|consen 66 TALALTPDEEVLVTASRSQLLRVWSLPTG-----K--------------LIRSWKAIHEAPVITMAFDPTGTLLATGGAD 126 (775)
T ss_pred heeeecCCccEEEEeeccceEEEEEcccc-----h--------------HhHhHhhccCCCeEEEEEcCCCceEEecccc
Confidence 34445566888888888899999955443 2 2334445 99999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~--~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~ 654 (768)
+.|+|||+..+.+...+++|.+.|.++.|+|+-. .|++|..|++|++||+++...++.+...|.+.|++++|.+++..
T Consensus 127 ~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~ 206 (775)
T KOG0319|consen 127 GRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE 206 (775)
T ss_pred ceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce
Confidence 9999999999999999999999999999999744 58999999999999999766668888999999999999999776
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCCceEeeecc--------
Q 004207 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVETQVCRLKLQ-------- 721 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~-----~~~llags~Dg~I~IwD~~t~~~~~~~~-------- 721 (768)
+| +++.|..|.+||+...++.+++.....+.++.+-++ +.++++++.+|.+++||.++..+.....
T Consensus 207 ~l-s~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~ 285 (775)
T KOG0319|consen 207 LL-SVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEID 285 (775)
T ss_pred EE-EeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhh
Confidence 55 778899999999988888888887778888888877 7799999999999999998875543321
Q ss_pred -------------------------------------------------------------eeEEeecCCCceEEeccCC
Q 004207 722 -------------------------------------------------------------TLELWNMTENKTLTLSAHD 740 (768)
Q Consensus 722 -------------------------------------------------------------~I~iwd~~~~~~~~l~~H~ 740 (768)
.+++|+..+..+..+.+|+
T Consensus 286 ~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~ 365 (775)
T KOG0319|consen 286 HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHT 365 (775)
T ss_pred cceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCch
Confidence 7788888888888889999
Q ss_pred CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 741 KLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 741 ~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.|.+++...+|.+|+|||.|.+|++|+
T Consensus 366 e~vlSL~~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 366 EAVLSLDVWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred hheeeeeecccCcEEEEecCCceEEEEE
Confidence 9999999667788999999999999993
No 71
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=1.4e-21 Score=222.96 Aligned_cols=200 Identities=16% Similarity=0.189 Sum_probs=160.8
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWC 583 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWd 583 (768)
.+.+|++|+.|++|++|...+.... ......+..+.+|...|.+|+|+|++ .+|++|+.|++|+|||
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~------------~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLT------------QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccc------------cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 4578999999999999976543210 00113456788999999999999975 6999999999999999
Q ss_pred CCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCC-eEEEEEeCCCCeEEEEE---
Q 004207 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDLLCSC--- 659 (768)
Q Consensus 584 l~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~-V~slafsp~g~~lLaSg--- 659 (768)
+.+++.+..+.+|...|.+++|+|++.+|++++.|++|+|||++++.. +..+.+|.+. +..+.|.+++..++++|
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-EEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence 999999999999999999999999999999999999999999998775 6777888765 45678998877666555
Q ss_pred eCCCcEEEEECCCCe-eEEEEec--CCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEe
Q 004207 660 DNNSEIRYWSINNGS-CAGVFKC--QSGATQMRFQPRLGRILAAA-IENYISILDVETQVCR 717 (768)
Q Consensus 660 s~Dg~I~iWDl~sg~-~i~~~~~--~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~ 717 (768)
+.|+.|++||+++.. ++..+.. ...+....|++++..+++++ .|+.|++||+.++...
T Consensus 234 s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 234 SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 347999999998754 3333332 23455667899999988887 5999999999887643
No 72
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2e-22 Score=214.92 Aligned_cols=252 Identities=15% Similarity=0.271 Sum_probs=196.5
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVL 581 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~V 581 (768)
.-...+||+++..+.|.+|+...........+ .+.+-..+.+|.+.-++++|++. ..+|++++.|++|++
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~l 204 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICL 204 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccccceeEeeccCCCcEEE
Confidence 33467889999999999997765543222111 23445567899998999999994 447999999999999
Q ss_pred EECCCCe-------EEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CCeeEEEeecCCCCeEEEEEeCCC
Q 004207 582 WCTESFT-------VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSK 652 (768)
Q Consensus 582 Wdl~t~~-------~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t-~~~~~~~~~~h~~~V~slafsp~g 652 (768)
||+.... ....+.+|...|.+++|++ +..+|++++.|+.+.|||+++ ...+.....+|.+.|.|++|+|-+
T Consensus 205 wdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~ 284 (422)
T KOG0264|consen 205 WDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN 284 (422)
T ss_pred EeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC
Confidence 9986532 3466789999999999999 467899999999999999996 334467788999999999999999
Q ss_pred CeEEEEEeCCCcEEEEECCCC-eeEEEEec-CCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207 653 EDLLCSCDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMT 729 (768)
Q Consensus 653 ~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~-~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~ 729 (768)
..+||+|+.|++|++||+|+- .+++++.. ...|.+|.|+|.... |++++.|+.+.|||+..-....... |..
T Consensus 285 ~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e-----da~ 359 (422)
T KOG0264|consen 285 EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE-----DAE 359 (422)
T ss_pred CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh-----hhc
Confidence 999999999999999999974 45666665 566999999998665 5566789999999997633221100 111
Q ss_pred CC---ceEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207 730 EN---KTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 768 (768)
Q Consensus 730 ~~---~~~~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~IWD 768 (768)
.+ -++.-.+|...|..+.|+|... .|+|.+.|+.+.||+
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 22 2335569999999999999986 567788999999995
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.1e-23 Score=212.76 Aligned_cols=214 Identities=21% Similarity=0.317 Sum_probs=178.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--------ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--------EEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl--------~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW 624 (768)
+....+.|..|||||.||++|+.||.|-|||..+|+....+ .-+..+|.|+.|+.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34556899999999999999999999999999998876544 3477899999999999999999999999999
Q ss_pred ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcC
Q 004207 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~D 703 (768)
.++++.+..+.-.+|...|+|+.|+.|+..++ +++.|.+|++.-+.+|++++.+.++ ..|+...|.++|.++++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99999874444458999999999999988666 8999999999999999999999875 458899999999999999999
Q ss_pred CeEEEEECCCceEeeecc----------------------------eeEEeecCCCceEEecc---CCCCeeEEEEeCCC
Q 004207 704 NYISILDVETQVCRLKLQ----------------------------TLELWNMTENKTLTLSA---HDKLVSSLAASTVN 752 (768)
Q Consensus 704 g~I~IwD~~t~~~~~~~~----------------------------~I~iwd~~~~~~~~l~~---H~~~I~sla~spdg 752 (768)
|+|++|+..+.+|...++ ++.+.++...-+..+.. ..+...+++.+|.|
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCC
Confidence 999999999988877665 33333333322223321 23455677789999
Q ss_pred CEEEEEECCCcEEEe
Q 004207 753 GMVASASHDKCVKIW 767 (768)
Q Consensus 753 ~~LaSgs~DG~V~IW 767 (768)
.++++.++|+.++.|
T Consensus 450 ewiYcigED~vlYCF 464 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCF 464 (508)
T ss_pred cEEEEEccCcEEEEE
Confidence 999999999999876
No 74
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.90 E-value=1.6e-21 Score=202.87 Aligned_cols=275 Identities=14% Similarity=0.200 Sum_probs=217.4
Q ss_pred cccCCCCCceEEEEecCCC--------CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCcee
Q 004207 474 LQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (768)
Q Consensus 474 l~~s~s~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~ 545 (768)
+...|+.+...++|..... +...+....+...+.+||+|..+|.|.+|....+.
T Consensus 78 l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~------------------ 139 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG------------------ 139 (399)
T ss_pred eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc------------------
Confidence 4445555666666665432 33344566677788899999999999999654432
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
....+...-..|.=+.|+|-+..|+.|+.||.|-+|.+.+......+.+|..++++-.|.|+|++++++..||+|++||
T Consensus 140 -~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 140 -EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred -eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence 1222334456688899999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---------CCCeeEEE---EecC
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---------QSGATQMR---FQPR 693 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---------~~~i~sl~---fsp~ 693 (768)
+.++......-........++.++..+. ++++|+.++.+++.+..+|+.+..... ...+.++. ++..
T Consensus 219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~-~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~ 297 (399)
T KOG0296|consen 219 PKTGQPLHKITQAEGLELPCISLNLAGS-TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK 297 (399)
T ss_pred cCCCceeEEecccccCcCCccccccccc-eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc
Confidence 9998763333323345678888888865 666999999999999999988877762 22234444 4444
Q ss_pred CCEEEEEEcCCeEEEEECCCceEeeecc-----------------------eeEEeecCCCceE-EeccCCCCeeEEEEe
Q 004207 694 LGRILAAAIENYISILDVETQVCRLKLQ-----------------------TLELWNMTENKTL-TLSAHDKLVSSLAAS 749 (768)
Q Consensus 694 ~~~llags~Dg~I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~s 749 (768)
-...++|+.||+|.|||+...+..+.+. .|+.||.+++.++ ++.+|...|.+++++
T Consensus 298 lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 298 LPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred cchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence 4567788899999999998765444332 8999999999876 678999999999999
Q ss_pred CCCCEEEEEECCCcEEEeC
Q 004207 750 TVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 750 pdg~~LaSgs~DG~V~IWD 768 (768)
|+.++|+|+|.|++.+||+
T Consensus 378 ~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred CCCcEEEEecCCCeEEEEe
Confidence 9999999999999999985
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=5.8e-22 Score=213.00 Aligned_cols=260 Identities=18% Similarity=0.237 Sum_probs=197.5
Q ss_pred CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (768)
Q Consensus 493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS 572 (768)
++-+++...+++.+..+++|+.|.+|++|+...- +...+.++ .+. ......|.++.|++.|..|++
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gM-das~~~fr-----------~l~--P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGM-DASMRSFR-----------QLQ--PCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccc-cccchhhh-----------ccC--cccccccceeeecCCCCeEEE
Confidence 5667778888999999999999999999965432 11111111 111 233456999999999998888
Q ss_pred EeCCCcEEEEECCCCeEEEEe------------ccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEee--
Q 004207 573 GGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT-- 637 (768)
Q Consensus 573 gs~Dg~I~VWdl~t~~~~~tl------------~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~-- 637 (768)
.+....++|+|.+..+.+... ++|...++|.+|+|+ ...|+|++.||++||||++..+.-+..+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 888889999998876655433 579999999999996 45799999999999999987664444433
Q ss_pred ---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE--EEEe--c--CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 638 ---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK--C--QSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 638 ---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i--~~~~--~--~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
+..-++++++|++++. +|++|..||.|.+||.++.... ..++ + ...|+||.|+++|++|++-+.|+++++
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred cCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 2345789999999988 4778888999999998653322 2221 1 346999999999999999999999999
Q ss_pred EECCCceEeeecc----------------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCC
Q 004207 709 LDVETQVCRLKLQ----------------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 753 (768)
Q Consensus 709 wD~~t~~~~~~~~----------------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~ 753 (768)
||++..+...... .+.+||..+-..+ ++.-....|..+.|+|.-+
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 9998753221111 5777776654443 4445567799999999999
Q ss_pred EEEEEECCCcEEEe
Q 004207 754 MVASASHDKCVKIW 767 (768)
Q Consensus 754 ~LaSgs~DG~V~IW 767 (768)
.|+.|+.||+++||
T Consensus 471 Qi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVY 484 (641)
T ss_pred heeeecCCCceEEE
Confidence 99999999999986
No 76
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.5e-22 Score=222.11 Aligned_cols=255 Identities=16% Similarity=0.264 Sum_probs=203.1
Q ss_pred cCCCCCceEEEEecC--------CCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeE
Q 004207 476 HNGASSKSLLMFGSD--------GMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547 (768)
Q Consensus 476 ~s~s~~~~~l~~~~~--------~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~ 547 (768)
+.+-++..+-.|.-. ..|.-.+..+.+++...+.++|+.|..|++|++... ++
T Consensus 25 LtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r-------------------rc 85 (1202)
T KOG0292|consen 25 LTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR-------------------RC 85 (1202)
T ss_pred EEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc-------------------ee
Confidence 334445555555432 224555667888999999999999999999966433 45
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
+.++.+|-+.|..+.|++.-.+|+++|.|-+|+||+..+.+++..+.+|...|-|..|+|....++++|-|-+|||||+.
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CC---------------------------C-eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE--
Q 004207 628 NP---------------------------D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-- 677 (768)
Q Consensus 628 t~---------------------------~-~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-- 677 (768)
.- . .....+.||...|..++|||.-. +|++|++|..|++|.+...+.-.
T Consensus 166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeeh
Confidence 21 0 12356789999999999999865 88899999999999987533221
Q ss_pred E-EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207 678 V-FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 756 (768)
Q Consensus 678 ~-~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La 756 (768)
+ ..+...|.++.|+|..+.+++.+.|++|+|||+...+.+..++ ...+.-+.++.+|..++++
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr----------------rendRFW~laahP~lNLfA 308 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR----------------RENDRFWILAAHPELNLFA 308 (1202)
T ss_pred hhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee----------------ccCCeEEEEEecCCcceee
Confidence 1 1235679999999999999999999999999998877654432 3345567788888887776
Q ss_pred EEECCCcEEEe
Q 004207 757 SASHDKCVKIW 767 (768)
Q Consensus 757 Sgs~DG~V~IW 767 (768)
.|- |+-+.||
T Consensus 309 AgH-DsGm~VF 318 (1202)
T KOG0292|consen 309 AGH-DSGMIVF 318 (1202)
T ss_pred eec-CCceEEE
Confidence 554 4444444
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=6.5e-23 Score=215.76 Aligned_cols=242 Identities=19% Similarity=0.337 Sum_probs=205.7
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
....+++|+.|..|++|..... ....+.++.+..+.|+++.|.++++++++++.|+.+++|++
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~-----------------k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGE-----------------KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred Ccchhhhcchhhhhhhhhcccc-----------------hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4457799999999999955322 13345677788899999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~ 664 (768)
.......++.+|++.|+++.|......+++|+.|.+|++||+....+ .+++.. .+.+..|+.. ...+++|-.|++
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-~kt~l~-~S~cnDI~~~---~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-SKTVLP-GSQCNDIVCS---ISDVISGHFDKK 323 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe-eccccc-cccccceEec---ceeeeecccccc
Confidence 99999999999999999999998777799999999999999998655 443332 2456666665 346779999999
Q ss_pred EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----------------------
Q 004207 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----------------------- 721 (768)
Q Consensus 665 I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----------------------- 721 (768)
|++||+++..++.....++.|+++..++++..+++++.|+++.++|+++......+.
T Consensus 324 vRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred eEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 999999999999999999999999999999999999999999999999987666544
Q ss_pred ------eeEEeecCCCceEEec--cCCC-CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ------TLELWNMTENKTLTLS--AHDK-LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ------~I~iwd~~~~~~~~l~--~H~~-~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++|++.++++.... .+.. .|++++|+|.|.+|++++.++.+.+|.
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 8999999998876432 2333 699999999999999999999999994
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=8.3e-22 Score=228.56 Aligned_cols=260 Identities=19% Similarity=0.292 Sum_probs=198.8
Q ss_pred CccccCCCCEEEeec--CCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 004207 499 PNQLTDMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (768)
Q Consensus 499 ~~~l~~~~~~latGS--~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~D 576 (768)
++.+++....+++|+ .|+.+++|....-.+. .+.....-.+.+.....|.+.|+|+.|++||.+||+|+.|
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~-------~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE-------KEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccch-------hhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 444566777889999 9999999943221100 0000000123456678999999999999999999999999
Q ss_pred CcEEEEECCC------------------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeec
Q 004207 577 KKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (768)
Q Consensus 577 g~I~VWdl~t------------------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~ 638 (768)
+.|.||.... .+++..+.+|...|.+++|+|++.+|++++.|++|.||+..+. ..+..+.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeec
Confidence 9999998762 2467788999999999999999999999999999999999998 55899999
Q ss_pred CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------CCCeeEEEEecCCCEEEEEEc----CCeEE
Q 004207 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI----ENYIS 707 (768)
Q Consensus 639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-------~~~i~sl~fsp~~~~llags~----Dg~I~ 707 (768)
|.+.|..+.|+|-|+ +||+-+.|++|+||++.+..+.+.+.. ...+..+.|+|+|.+|++... -.++.
T Consensus 170 H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred ccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 999999999999987 777999999999999888777766653 234778999999998887542 23455
Q ss_pred EEECCCceEee------------------------------------------ecceeEEeecCCCceEEec--cCCCCe
Q 004207 708 ILDVETQVCRL------------------------------------------KLQTLELWNMTENKTLTLS--AHDKLV 743 (768)
Q Consensus 708 IwD~~t~~~~~------------------------------------------~~~~I~iwd~~~~~~~~l~--~H~~~I 743 (768)
|++-.+.++.. ..++|.+|.....+++... --...|
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI 328 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSI 328 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCce
Confidence 55443332111 1116777776555554322 224579
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEe
Q 004207 744 SSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 744 ~sla~spdg~~LaSgs~DG~V~IW 767 (768)
.+++|+|||..|+.+|.||+|.++
T Consensus 329 ~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 329 VDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred eeeeEcCCCCeEEEEecCCeEEEE
Confidence 999999999999999999999886
No 79
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=4.1e-21 Score=220.70 Aligned_cols=180 Identities=22% Similarity=0.325 Sum_probs=153.2
Q ss_pred EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCe-------eEEEeecCCCCeE
Q 004207 573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM 644 (768)
Q Consensus 573 gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~-------~~~~~~~h~~~V~ 644 (768)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++.. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998887888899999999999999996 78999999999999999976431 2446788999999
Q ss_pred EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeE
Q 004207 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLE 724 (768)
Q Consensus 645 slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~ 724 (768)
+|+|+|++..+|++++.|++|+|||++++..+..+.+...|.+++|+|++..|++++.|+.|+|||++++....
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~------ 203 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS------ 203 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE------
Confidence 99999998888889999999999999999888877777889999999999999999999999999999876543
Q ss_pred EeecCCCceEEeccCCCCeeE-----EEEeCCCCEEEEEECCC----cEEEeC
Q 004207 725 LWNMTENKTLTLSAHDKLVSS-----LAASTVNGMVASASHDK----CVKIWK 768 (768)
Q Consensus 725 iwd~~~~~~~~l~~H~~~I~s-----la~spdg~~LaSgs~DG----~V~IWD 768 (768)
.+.+|.+.+.+ ..|++++.+|++++.|+ .|+|||
T Consensus 204 ----------tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWD 246 (568)
T PTZ00420 204 ----------SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWD 246 (568)
T ss_pred ----------EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEE
Confidence 23467665433 33558889999988775 799997
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.4e-21 Score=199.24 Aligned_cols=279 Identities=19% Similarity=0.298 Sum_probs=217.6
Q ss_pred cCCCCCceEEEEecCCCCcc--------cccCccccCCCCEEEeecCCCcEEEee------cCCC-----CCCCCccc--
Q 004207 476 HNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFL------SPDD-----ADPRDRVG-- 534 (768)
Q Consensus 476 ~s~s~~~~~l~~~~~~~~~~--------~~~~~~l~~~~~~latGS~D~~v~~w~------~~~~-----~d~~~~~~-- 534 (768)
..++.+.+...|+.....|+ .+.++.++..+.++.++|-|++.++|. .+.. ..+.+...
T Consensus 164 gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s 243 (481)
T KOG0300|consen 164 GTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS 243 (481)
T ss_pred eecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence 34556777778887765333 344778888999999999999999995 1111 01111111
Q ss_pred ----cccc---cCCCcee-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEc
Q 004207 535 ----RSAE---VGKGFTF-TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606 (768)
Q Consensus 535 ----~~~~---~~~~~~~-~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fs 606 (768)
+..+ ..++.++ .++..+.+|.+.|.|+.|-..|+.+++++.|.+..+||+++++++..+.+|....+.++-+
T Consensus 244 De~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 244 DEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred cccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccC
Confidence 1111 1223333 3677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCCe
Q 004207 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGA 685 (768)
Q Consensus 607 pdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~~~~i 685 (768)
|.-++++|++.|.+.++||++..-..+..|.+|...|+++.|.-+.+ +++|+.|.+|++||+++. ..+.++....++
T Consensus 324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtdS~~ 401 (481)
T KOG0300|consen 324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTDSPA 401 (481)
T ss_pred CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeecCCcc
Confidence 99999999999999999999976666889999999999999998744 669999999999999974 577888888999
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC--CEEEEEECCCc
Q 004207 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN--GMVASASHDKC 763 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg--~~LaSgs~DG~ 763 (768)
..++++..+..|+.--.+..|++||+......... ...-.+|...|+|++|..+. .-|++++-|..
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP------------rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~ 469 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP------------RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRM 469 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecCCCccccCC------------cccccccceeeeeeeccccCcccccccccccce
Confidence 99999886555555555667999998765432111 11234899999999998654 46789999998
Q ss_pred EEEeC
Q 004207 764 VKIWK 768 (768)
Q Consensus 764 V~IWD 768 (768)
+.=|+
T Consensus 470 v~gW~ 474 (481)
T KOG0300|consen 470 VAGWK 474 (481)
T ss_pred eeeeE
Confidence 88774
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=6.4e-21 Score=191.20 Aligned_cols=202 Identities=21% Similarity=0.257 Sum_probs=175.2
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~ 629 (768)
.+.+|..+|+-|.|+.+|.+|++|+.|.++.||-..+++.+.++.+|++.|+||..+.+.++|+||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 35789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCeEEEEEe----CCCcEEEEECCC-------CeeEEEEec-CCCeeEEEEecCCCEE
Q 004207 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSINN-------GSCAGVFKC-QSGATQMRFQPRLGRI 697 (768)
Q Consensus 630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs----~Dg~I~iWDl~s-------g~~i~~~~~-~~~i~sl~fsp~~~~l 697 (768)
+. +..+. ...+|..+.|+.+|+.++++.+ ..+.|.++|++. .+++..+.. ...++.+.|.|.+.+|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 86 55555 4578999999999886665543 347899999983 444555543 6779999999999999
Q ss_pred EEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 698 lags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++|..||.|.+||++++..... ....|...|+.+.+++|..+|+++|.|.+-++||
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~---------------s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVD---------------SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred EEecCCCcEEEEEcccCceeee---------------chhhhccccccccccCCcceEEecccCccceeee
Confidence 9999999999999998644321 1236888999999999999999999999999997
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.7e-22 Score=217.17 Aligned_cols=233 Identities=16% Similarity=0.266 Sum_probs=198.1
Q ss_pred CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd 583 (768)
+.++++.+|+.|+.|++|......... .-.....+..|.+.|..+....+++.|++++.|-+|++|+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~-------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~ 101 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEP-------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN 101 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCc-------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence 457789999999999999655442110 0113556778999999999999999999999999999999
Q ss_pred CCCC--eEEEEeccCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCCCe---------eEEEee-cCCCCeEEEEEeC
Q 004207 584 TESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHP 650 (768)
Q Consensus 584 l~t~--~~~~tl~~h~~~V~sl~f-spdg~~LaTgs~DgtIrVWDl~t~~~---------~~~~~~-~h~~~V~slafsp 650 (768)
.... -++.++..|.+.|.|+++ .++...+|+|+-|+.|.|||++++.. ....+. ++...|++++.++
T Consensus 102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 8876 577888999999999999 78889999999999999999997622 122233 7889999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMT 729 (768)
Q Consensus 651 ~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~ 729 (768)
.| .+|++|+..+.|++||.++.+.+..+.+ ...|..+..+++|..++++++||+|++||+...+|...
T Consensus 182 t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T---------- 250 (735)
T KOG0308|consen 182 TG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT---------- 250 (735)
T ss_pred cc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee----------
Confidence 87 5888999999999999999888777775 45699999999999999999999999999998887653
Q ss_pred CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 730 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
+..|+..|+++..+|+-.+|++|+.||.|..
T Consensus 251 ------~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 251 ------YIVHKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred ------EEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 4489999999999999999999999999875
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=7.9e-22 Score=200.77 Aligned_cols=205 Identities=27% Similarity=0.422 Sum_probs=173.5
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEeccCCCCEEEEEEcCC
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS 608 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t------------------~~~~~tl~~h~~~V~sl~fspd 608 (768)
+...+..|+.++.+.+|++||.++|+|+.|..|+|+|++. --+++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4566789999999999999999999999999999999871 1256788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCe--eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cC
Q 004207 609 LSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQ 682 (768)
Q Consensus 609 g~~LaTgs~DgtIrVWDl~t~~~--~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~~ 682 (768)
..+|++|+.|++|++||+..... ..+.+. ...+|.+|.|||.|+.++ +|..-.++++||+.+..|...-. +.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999999976432 122232 346899999999998555 78888899999999988765443 35
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCCEEEEEECC
Q 004207 683 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 683 ~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSgs~D 761 (768)
+.|+++.+++.+...++++.||.|++||--+.+|+..+. .+|. ..|.+..|..+++||++.|.|
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~---------------~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG---------------NAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH---------------hhcCCceeeeEEEccCCeEEeecCCc
Confidence 679999999999999999999999999988888765544 2565 468999999999999999999
Q ss_pred CcEEEeC
Q 004207 762 KCVKIWK 768 (768)
Q Consensus 762 G~V~IWD 768 (768)
..|++|+
T Consensus 327 S~vkLWE 333 (430)
T KOG0640|consen 327 STVKLWE 333 (430)
T ss_pred ceeeeee
Confidence 9999995
No 84
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.5e-22 Score=222.02 Aligned_cols=229 Identities=18% Similarity=0.329 Sum_probs=190.2
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWd 583 (768)
.+++|++++..|.|.+|+..... .-+.+..|..|...|++++|++ .-.+|++|+.||+|++||
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~----------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSI----------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred hhhhheeecCCCcEEEEecCccc----------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 46789999999999999654321 1123456789999999999998 456899999999999999
Q ss_pred CCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207 584 TESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 584 l~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D 662 (768)
++..+...++.+....|.+|.|+|. +.+|+++...|.|.+||++.+..+...+.+|.++|.|+.|||+ +.+||||+.|
T Consensus 163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRD 241 (839)
T KOG0269|consen 163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRD 241 (839)
T ss_pred eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCC
Confidence 9999988899888999999999994 7889999999999999999998888999999999999999996 4588899999
Q ss_pred CcEEEEECCCCe--eEEEEecCCCeeEEEEecCCCEEEEEE---cCCeEEEEECCCceEeeecceeEEeecCCCceEEec
Q 004207 663 SEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQTLELWNMTENKTLTLS 737 (768)
Q Consensus 663 g~I~iWDl~sg~--~i~~~~~~~~i~sl~fsp~~~~llags---~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~ 737 (768)
+.|+|||+.+.+ .+.++....++.+|.|-|...+.++.+ .|-.|+|||++..-.. ..++.
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP---------------~~t~~ 306 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP---------------YATFL 306 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc---------------ceeee
Confidence 999999998643 556677778999999999988755544 3677888888653221 22566
Q ss_pred cCCCCeeEEEEeC-CCCEEEEEECCCcEE
Q 004207 738 AHDKLVSSLAAST-VNGMVASASHDKCVK 765 (768)
Q Consensus 738 ~H~~~I~sla~sp-dg~~LaSgs~DG~V~ 765 (768)
.|...++.++|.. |...|.+++.||+|.
T Consensus 307 eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 307 EHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred ccCccccceeccCCCceeeEeecCccHHH
Confidence 8999999999975 346899999999874
No 85
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.6e-21 Score=191.87 Aligned_cols=247 Identities=18% Similarity=0.244 Sum_probs=192.8
Q ss_pred CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEE
Q 004207 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLL 570 (768)
Q Consensus 493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~L 570 (768)
+...+....++--+..|+++|.|++|++|...... ....+.++.+|.++|.-++|.. -|.+|
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~----------------~s~ll~~L~Gh~GPVwqv~wahPk~G~iL 73 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG----------------QSKLLAELTGHSGPVWKVAWAHPKFGTIL 73 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC----------------CceeeeEecCCCCCeeEEeecccccCcEe
Confidence 34445556667778899999999999999554331 1356778899999999999976 79999
Q ss_pred EEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--CeeEEEeecCCCCeE
Q 004207 571 ATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP--DYSLRTFTGHSTTVM 644 (768)
Q Consensus 571 aSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~--~~~~~~~~~h~~~V~ 644 (768)
|+|+.||.|.||.-++++ .......|...|++|+|.|. |-.|++++.||.|.|.+++.. ....+...+|.-.|+
T Consensus 74 AScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn 153 (299)
T KOG1332|consen 74 ASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN 153 (299)
T ss_pred eEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc
Confidence 999999999999988764 33455679999999999996 668999999999999998764 233466778999999
Q ss_pred EEEEeCC---C----------CeEEEEEeCCCcEEEEECCCCeeE--EEEec-CCCeeEEEEecCC----CEEEEEEcCC
Q 004207 645 SLDFHPS---K----------EDLLCSCDNNSEIRYWSINNGSCA--GVFKC-QSGATQMRFQPRL----GRILAAAIEN 704 (768)
Q Consensus 645 slafsp~---g----------~~lLaSgs~Dg~I~iWDl~sg~~i--~~~~~-~~~i~sl~fsp~~----~~llags~Dg 704 (768)
+++|.|. | -..|++|+.|..|+||+..+++-+ .++.. .+-|..++|.|.. .+|++++.|+
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 9999985 3 135789999999999999886432 23433 3458899999875 3589999999
Q ss_pred eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 705 YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 705 ~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+|.||..+.... -| +...+......+..+.|+..|++|++++.|..|++|+
T Consensus 234 ~viIwt~~~e~e--------~w-----k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 234 TVIIWTKDEEYE--------PW-----KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cEEEEEecCccC--------cc-----cccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 999998763211 11 1122233557799999999999999999999999995
No 86
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=4e-21 Score=212.34 Aligned_cols=199 Identities=22% Similarity=0.354 Sum_probs=172.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCC
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENP 629 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd---g~~LaTgs~DgtIrVWDl~t~ 629 (768)
+..-.|.|++++|+|++||+|..-|+++||++...+....++.|...|.|+.|+.. .++||+++.|.-|+|||+...
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 34556999999999999999999999999999999999999999999999999852 578999999999999999865
Q ss_pred CeeEEEeecCCCCeEEEEEeC-------------------------------------------------CCCeEEEEEe
Q 004207 630 DYSLRTFTGHSTTVMSLDFHP-------------------------------------------------SKEDLLCSCD 660 (768)
Q Consensus 630 ~~~~~~~~~h~~~V~slafsp-------------------------------------------------~g~~lLaSgs 660 (768)
-..+.++.+|...|++|.|.. ..+ ++++++
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~c 615 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVC 615 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEe
Confidence 555566666666666666643 323 456788
Q ss_pred CCCcEEEEECCCCeeEEEEec----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEe
Q 004207 661 NNSEIRYWSINNGSCAGVFKC----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTL 736 (768)
Q Consensus 661 ~Dg~I~iWDl~sg~~i~~~~~----~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l 736 (768)
.|..|+|||+.+++.++.|+. ++....+...|.+.|+++.+.|.++.+||+.+++|+...
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m---------------- 679 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM---------------- 679 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh----------------
Confidence 899999999999999999986 356888999999999999999999999999998886543
Q ss_pred ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 737 SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 737 ~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+|...|+.+.|.+|.++|++.+.||+|.||+
T Consensus 680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred cCcchheeeeeecccchhheeecCCceEEEEE
Confidence 49999999999999999999999999999995
No 87
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=6.3e-21 Score=211.51 Aligned_cols=245 Identities=20% Similarity=0.304 Sum_probs=193.0
Q ss_pred cccCCCCCceEEEEecCCC-----------CcccccCccccCCC-CEEEeecCCCcEEEeecCCCCCCCCccccccccCC
Q 004207 474 LQHNGASSKSLLMFGSDGM-----------GSLTSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (768)
Q Consensus 474 l~~s~s~~~~~l~~~~~~~-----------~~~~~~~~~l~~~~-~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~ 541 (768)
.+.+++++.+..+|...+. ..+......+...+ ..+.+|+.|.++.+|...
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~----------------- 89 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS----------------- 89 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC-----------------
Confidence 4677888888888887443 11112223333333 347889999999999332
Q ss_pred CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 004207 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (768)
Q Consensus 542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtI 621 (768)
...++.++++|...|.|++...++. +++|+.|.+++||.. +++...+.+|...|+++++-|+. .++|||.|++|
T Consensus 90 --~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI 163 (745)
T KOG0301|consen 90 --QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI 163 (745)
T ss_pred --CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence 2245778899999999999877777 999999999999975 46667799999999999999987 88999999999
Q ss_pred EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEE
Q 004207 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llag 700 (768)
++|.-. ..++++.+|...|..+++.+++. |++|+.||.|++|++ +|+++....+ ...+.++....+++.++++
T Consensus 164 klWk~~---~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 164 KLWKGG---TLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST 237 (745)
T ss_pred eeccCC---chhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence 999863 35889999999999999998855 569999999999999 5777776665 5568899988888999999
Q ss_pred EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+.|++++||+.. .|...+ .|. ..|+++.+-++|+ |++|+.||.|+||
T Consensus 238 gEDrtlriW~~~--e~~q~I-----------------~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 238 GEDRTLRIWKKD--ECVQVI-----------------TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred cCCceEEEeecC--ceEEEE-----------------ecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 999999999876 222211 232 3678888877776 6789999999998
No 88
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.5e-22 Score=224.90 Aligned_cols=222 Identities=22% Similarity=0.325 Sum_probs=193.7
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW 582 (768)
....+++++|+.|..+.+|..... ..+..+.+|..+|.||.|+++..+|+.|+.+|+|+||
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp-------------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKP-------------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVW 97 (825)
T ss_pred eccceeeccCCCceeeccccccCC-------------------chhheeeccCCcceeeecCcchhhhcccccCCceeee
Confidence 456789999999999999944322 1233478999999999999999999999999999999
Q ss_pred ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 583 dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D 662 (768)
|++..+.++++.+|...+.+|.|+|-+.+++.|+.|+.+++||++...+ ...+.+|...|.++.|+|+|. +++++++|
T Consensus 98 DleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed 175 (825)
T KOG0267|consen 98 DLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC-SHTYKSHTRVVDVLRLSPDGR-WVASGGED 175 (825)
T ss_pred ehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc-eeeecCCcceeEEEeecCCCc-eeeccCCc
Confidence 9999999999999999999999999999999999999999999997554 888899999999999999987 66689999
Q ss_pred CcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207 663 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK 741 (768)
Q Consensus 663 g~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~ 741 (768)
.+++|||+..|+.+..|+ +.+.+..+.|+|..-.+..|+.|.+|++||+++...+...+ ....
T Consensus 176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~----------------~~~~ 239 (825)
T KOG0267|consen 176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK----------------PETD 239 (825)
T ss_pred ceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC----------------CccC
Confidence 999999999999999998 56779999999997778889999999999999876654332 3356
Q ss_pred CeeEEEEeCCCCEEEEEECC
Q 004207 742 LVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 742 ~I~sla~spdg~~LaSgs~D 761 (768)
.|.+++|+|++..+++|..+
T Consensus 240 ~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 240 GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CceeeeecCCceeeecCchh
Confidence 79999999999988888654
No 89
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=1.6e-20 Score=187.82 Aligned_cols=229 Identities=18% Similarity=0.300 Sum_probs=188.2
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL 581 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~V 581 (768)
.-.+..+++|+.|+++.+|+.... .+..-...++|.+.|..++|+| ....|++++.|++|++
T Consensus 29 n~~g~~lasgs~dktv~v~n~e~~-----------------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 29 NCDGTKLASGSFDKTVSVWNLERD-----------------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred cccCceeeecccCCceEEEEecch-----------------hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 345678999999999999966433 1112234579999999999998 5568999999999999
Q ss_pred EECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe------------------------------
Q 004207 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------------------------ 631 (768)
Q Consensus 582 Wdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~------------------------------ 631 (768)
||+..+++...+....+. .-+.|+|+|.+++.++.|..|.+.|.++.+.
T Consensus 92 wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 999999999888755444 4678999999999999999998888763211
Q ss_pred ----------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEE
Q 004207 632 ----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 632 ----------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llag 700 (768)
++..+.+|.....||.|+|+|+ .|++|+.|-.+.+||+..--|++.+.. .-+|..+.|+.+|.+|+++
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 2345668999999999999987 777999999999999998888888864 6789999999999999999
Q ss_pred EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC---------CcEEEe
Q 004207 701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW 767 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D---------G~V~IW 767 (768)
+.|..|-|=+++++..+..+ .+.++...|+|+|...+||-+++| |+||||
T Consensus 250 SEDh~IDIA~vetGd~~~eI-----------------~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDRVWEI-----------------PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred CccceEEeEecccCCeEEEe-----------------eccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 99999999888887654332 478889999999999999988764 577775
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.8e-20 Score=189.43 Aligned_cols=219 Identities=23% Similarity=0.324 Sum_probs=175.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEE
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVW 624 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~--DgtIrVW 624 (768)
..+.++.-.+.|+++.|+++|.++++++.|.+|+|||..+++.+.++..+...|..++|......++.++. |.+||..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 33445556788999999999999999999999999999999999999988888999999877777777776 8899999
Q ss_pred ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 004207 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (768)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg 704 (768)
++.+.++ ++.+.||...|.+|+.+|-++ .|++++.|++|++||++..+|...+... .-..++|+|.|-+++++...+
T Consensus 86 sl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 86 SLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEecCCC
Confidence 9999887 999999999999999999975 6669999999999999988888777653 334578999987777777777
Q ss_pred eEEEEECCCceEe--eecc----------------------------eeEEeecCCCceE-EeccCCC---CeeEEEEeC
Q 004207 705 YISILDVETQVCR--LKLQ----------------------------TLELWNMTENKTL-TLSAHDK---LVSSLAAST 750 (768)
Q Consensus 705 ~I~IwD~~t~~~~--~~~~----------------------------~I~iwd~~~~~~~-~l~~H~~---~I~sla~sp 750 (768)
.|++||++..... ..+. .+.+.|.-+|.+. ++..+.. .....+|+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 9999999875211 0000 3444555555443 3333322 225678999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 004207 751 VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 751 dg~~LaSgs~DG~V~IWD 768 (768)
|+.+|++|+.||+|.||+
T Consensus 243 ds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCcEEEEecCCCcEEEEE
Confidence 999999999999999996
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=1.7e-20 Score=198.49 Aligned_cols=228 Identities=18% Similarity=0.205 Sum_probs=191.8
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
..++.+|+.|.++-+|+.... ..+.+++||...|+.+.|+++...+++++.|..|+||...
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~-------------------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~ 291 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSN-------------------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVP 291 (506)
T ss_pred CCcceecCCCCceEEEecchh-------------------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccc
Confidence 467899999999999954322 3467788999999999999999999999999999999998
Q ss_pred CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (768)
Q Consensus 586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~Dg~ 664 (768)
..........|..+|+.+..+|.|.||++++.|++..+.|++++........ ...-.+++.+|||||- +|.+|..|+.
T Consensus 292 ~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~ 370 (506)
T KOG0289|consen 292 LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGV 370 (506)
T ss_pred cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCce
Confidence 8777888889999999999999999999999999999999999876333322 2334589999999975 8889999999
Q ss_pred EEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCe
Q 004207 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLV 743 (768)
Q Consensus 665 I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I 743 (768)
|+|||+.+...+..|.. .++|..+.|+.+|-++++++.|+.|++||++..+....+ .+ .....|
T Consensus 371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~--------------~l-~~~~~v 435 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI--------------QL-DEKKEV 435 (506)
T ss_pred EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee--------------ec-cccccc
Confidence 99999999988888875 567999999999999999999999999999886532221 11 222368
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 744 SSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 744 ~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+++|...|.+|+.++.|=.|++++
T Consensus 436 ~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred eeEEEcCCCCeEEeecceeEEEEEe
Confidence 9999999999999998887777664
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=2.4e-21 Score=201.08 Aligned_cols=247 Identities=16% Similarity=0.230 Sum_probs=193.7
Q ss_pred cccCccccCCC-CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207 496 TSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 574 (768)
Q Consensus 496 ~~~~~~l~~~~-~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs 574 (768)
++...+.++.. ..+++|+.||.|++|+... ..++..+.+|.+.|..|++.. ..+++++
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-------------------R~~~~~f~AH~G~V~Gi~v~~--~~~~tvg 126 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-------------------RECIRTFKAHEGLVRGICVTQ--TSFFTVG 126 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhh-------------------hhhhheeecccCceeeEEecc--cceEEec
Confidence 33344444444 5689999999999995432 235678889999999999975 7799999
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~ 654 (768)
.|++|+.|.++. .++.++.+ ...+..|.-+..+..++||+.+ |.|||..... ++..+.-....|.++.|+|....
T Consensus 127 dDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETs 201 (433)
T KOG0268|consen 127 DDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETS 201 (433)
T ss_pred CCcceeeeeccC-Ccceeeec-cccccccccccccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcch
Confidence 999999999875 46677754 4567888877778889998765 8999997644 47777766788999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee---------------
Q 004207 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--------------- 719 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~--------------- 719 (768)
+|++|..|+.|.+||++.+.++..+...-....++|+|..-.++++..|..++.||++.......
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred heeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 99999999999999999999988887777788899999666677888889999999876432211
Q ss_pred -----------cceeEEeecCCCceEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 720 -----------LQTLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 720 -----------~~~I~iwd~~~~~~~~l~--~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.++|+||....+....+. ..-..|.||.|+.|..||+|||+|+.|++|+
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 117777776665544322 1123599999999999999999999999996
No 93
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=7.8e-21 Score=215.84 Aligned_cols=224 Identities=15% Similarity=0.216 Sum_probs=171.7
Q ss_pred CcccccCccccCCCCEEEeecCCCcEEEeecCCCC--------------------------------CCCCccc------
Q 004207 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------------------------DPRDRVG------ 534 (768)
Q Consensus 493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~--------------------------------d~~~~~~------ 534 (768)
+.-++-...+...++|||+|+.|+.|++|.+.+.. .++....
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 33444556677788999999999999999766510 0000000
Q ss_pred ---cccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC-CCC
Q 004207 535 ---RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLS 610 (768)
Q Consensus 535 ---~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp-dg~ 610 (768)
........+.-+++..+.+|.+.|.+|.||. ..+|++++.|++|++|++...+++.+|. |.+.|+||+|+| |.+
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 0000011233456788999999999999995 5589999999999999999999999885 999999999999 789
Q ss_pred EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---------
Q 004207 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------- 681 (768)
Q Consensus 611 ~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--------- 681 (768)
||++|+-||.||||++...+ +..+..-..-|++++|.|+|.. +++|+.+|.+++|+.+..+....+..
T Consensus 424 yFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred cEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 99999999999999998754 4445445588999999999884 45899999999999987766544431
Q ss_pred CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecc
Q 004207 682 QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQ 721 (768)
Q Consensus 682 ~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~ 721 (768)
+..|+.+.|.|... .+++.+.|..|+|||.++...+..++
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 33699999987543 59999999999999997665554443
No 94
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=4.4e-19 Score=188.31 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=178.0
Q ss_pred CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004207 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (768)
Q Consensus 507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~L-aSgs~Dg~I~VWdl~ 585 (768)
.++++++.|+.+++|..... ..+..+..|. .+.+++|+|+++.+ ++++.++.|++||..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 56788999999999964322 1233344443 36789999999976 566788999999999
Q ss_pred CCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-C
Q 004207 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S 663 (768)
Q Consensus 586 t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g 663 (768)
+++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+++... +..+. +...+.+++|+|++..++ ++..+ .
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~ 137 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVV-NTSETTN 137 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEE-EEecCCC
Confidence 9888877765544 5788999999877655 5689999999987653 44444 234578899999988655 44444 4
Q ss_pred cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeec----------------------
Q 004207 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL---------------------- 720 (768)
Q Consensus 664 ~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~---------------------- 720 (768)
.+.+||.++++.+..+.....+..++|+|++.++++++ .++.|++||+++.+....+
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence 57788999888877665556678899999999886655 5899999999876432110
Q ss_pred -----------ceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 004207 721 -----------QTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 768 (768)
Q Consensus 721 -----------~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg-s~DG~V~IWD 768 (768)
..+.+||..+++......+...+.+++|+|++.+|+++ +.+|.|+|||
T Consensus 218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 15778888877766544555679999999999999886 4689999997
No 95
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.5e-19 Score=184.18 Aligned_cols=248 Identities=18% Similarity=0.234 Sum_probs=186.2
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCC----------------------------ccccccccCCCceeeEE
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD----------------------------RVGRSAEVGKGFTFTEF 548 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~----------------------------~~~~~~~~~~~~~~~~~ 548 (768)
+.+..+++.+.++.+.+.|.++++|....+...+. ..+|.... ..-+.+
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl---~dNkyl 93 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL---HDNKYL 93 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe---ecCceE
Confidence 33444566677777788888888886654421111 11111111 122457
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
+.+.||...|++|+.+|-++.|++++.|++|++||++..++...+.... -..++|+|+|-++|++...+.|++||++.
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 8899999999999999988999999999999999999888887775433 34588999999999998888999999986
Q ss_pred C-CeeEEEee---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC----eeEEEEecCCCEEEEE
Q 004207 629 P-DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG----ATQMRFQPRLGRILAA 700 (768)
Q Consensus 629 ~-~~~~~~~~---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~----i~sl~fsp~~~~llag 700 (768)
- +.+..++. +-....+.|.|+|+|+.+|+ +...+.+++.|.-+|....++..+.. ....+|.|++.+++++
T Consensus 172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl-sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL-STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred cCCCCceeEccCCCCccceeeeEEcCCCCEEEE-EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence 4 33333333 33577999999999998775 55578999999999998888876322 2478899999999999
Q ss_pred EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+.||+|.+|+++++..+..+. ..+...+.++.|+|.-.+++|++. .+.+|
T Consensus 251 s~dg~i~vw~~~tg~~v~~~~---------------~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 251 SDDGTIHVWNLETGKKVAVLR---------------GPNGGPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred cCCCcEEEEEcCCCcEeeEec---------------CCCCCCccccccCCceeeeeecCc--eEEEE
Confidence 999999999998876654332 126788999999998777777654 56666
No 96
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=4.6e-20 Score=186.96 Aligned_cols=257 Identities=18% Similarity=0.290 Sum_probs=200.2
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWd 583 (768)
.++++.+|+.|+.|.+|+.....+.+....-+ +.........-.+|.-.|.++.|-| |...|.+++.|.+++|||
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~----k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWD 130 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIA----KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWD 130 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhcccee----heeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEee
Confidence 57899999999999999765443222111000 1111112233457889999999999 777999999999999999
Q ss_pred CCCCeEEEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207 584 TESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 584 l~t~~~~~tl~~h~~~V~sl~fspd---g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs 660 (768)
..+......++ ..+.|++-+|+|- ..++|+|..|-.|++.|+..+.+ ..++.+|...|.+|.|+|..+++|++|+
T Consensus 131 tnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 131 TNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred cccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeEEEecC
Confidence 99988877775 4567999999983 44778888888999999999887 8999999999999999999999999999
Q ss_pred CCCcEEEEECCCC-eeEEEEec---------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc---
Q 004207 661 NNSEIRYWSINNG-SCAGVFKC---------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--- 721 (768)
Q Consensus 661 ~Dg~I~iWDl~sg-~~i~~~~~---------------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~--- 721 (768)
.||.|++||++.. .|..++.. .+.+..++|..++.++++++.|..+++|+...+.......
T Consensus 209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~ 288 (397)
T KOG4283|consen 209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI 288 (397)
T ss_pred CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc
Confidence 9999999999864 44444432 3457889999999999999999999999997764321110
Q ss_pred ---------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 722 ---------------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 722 ---------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
.+.++++-++..+ .+..|-..|.|.++-|+-..+.+|+.|+.|..|
T Consensus 289 ~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 289 IHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMW 362 (397)
T ss_pred cccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccc
Confidence 4455555554443 466787789999999988889999999999888
No 97
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=1.8e-20 Score=207.97 Aligned_cols=220 Identities=19% Similarity=0.357 Sum_probs=186.3
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEE
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~s-l~fSp-dg~~LaSgs~Dg~I~VWd 583 (768)
+..+.++|.|+++++|.- .+..+.+...+.+|.+-|.+ ++|-+ ++..|++|+.|++|.+|.
T Consensus 25 ~~~i~s~sRd~t~~vw~~-----------------~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAK-----------------KGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred CeEEeecCCCCceeeeec-----------------cCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 346889999999999933 23345556677888888887 88876 555699999999999999
Q ss_pred CCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC
Q 004207 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (768)
Q Consensus 584 l~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg 663 (768)
+....++.++++|...|+|+....++. +++||+|.+++||-... +...+.+|...|+++.+.|++ .++||+.|.
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDK 161 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADK 161 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcc
Confidence 999999999999999999999887776 99999999999998764 245589999999999999986 577999999
Q ss_pred cEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCC
Q 004207 664 EIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKL 742 (768)
Q Consensus 664 ~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~ 742 (768)
+|++|.- ++++++|.+| ..|..+++-++ ..+++++.||.|+.|++. +.+ +.++.+|.+.
T Consensus 162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~-ge~----------------l~~~~ghtn~ 221 (745)
T KOG0301|consen 162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD-GEV----------------LLEMHGHTNF 221 (745)
T ss_pred eeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc-Cce----------------eeeeeccceE
Confidence 9999976 7888888864 45889999987 458899999999999883 333 3355699999
Q ss_pred eeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 743 VSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 743 I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|++++...++..|+|+++|++++||+
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEee
Confidence 99999888889999999999999996
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.4e-19 Score=173.85 Aligned_cols=256 Identities=20% Similarity=0.256 Sum_probs=199.2
Q ss_pred eEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEE
Q 004207 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH 562 (768)
Q Consensus 483 ~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~ 562 (768)
+...+.....+.-.+......+.+.+|++||.|.+|++.....+.. .. .+ .-..+.-|.+.|..++
T Consensus 78 p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~--~~--------~g----~dle~nmhdgtirdl~ 143 (350)
T KOG0641|consen 78 PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC--NA--------TG----HDLEFNMHDGTIRDLA 143 (350)
T ss_pred CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccc--cc--------cC----cceeeeecCCceeeeE
Confidence 3455555555555555556667889999999999999874433210 01 11 1234568999999999
Q ss_pred EcCC----CCEEEEEe-CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207 563 FSPD----GKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (768)
Q Consensus 563 fSpd----g~~LaSgs-~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~ 637 (768)
|-.+ +.+|++++ .|..|++-|..++.....+.+|++.|.++ ++-++-.|++|+.|.+||+||++-+.+ +.++.
T Consensus 144 fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~-v~~l~ 221 (350)
T KOG0641|consen 144 FLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSC-VNTLD 221 (350)
T ss_pred EecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccce-eeecc
Confidence 9643 45677764 46778888999999999999999999887 444588999999999999999987654 44332
Q ss_pred c--C-----CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207 638 G--H-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISIL 709 (768)
Q Consensus 638 ~--h-----~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~Iw 709 (768)
. | .+.|.+++..|.|+ +|++|-.|....+||++.+..+..+.. ...|.++.|+|...|+++++.|..|++-
T Consensus 222 ~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLT 300 (350)
T ss_pred CcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEe
Confidence 1 2 36799999999976 888999999999999999999988764 5679999999999999999999999999
Q ss_pred ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 710 D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
|+..... +. -.++....|+..+..+.|+|..--|++.+.|.++.+|
T Consensus 301 dlqgdla-~e-----------l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 301 DLQGDLA-HE-----------LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred ecccchh-hc-----------CceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 9876321 11 1234556799999999999999899999999999999
No 99
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.85 E-value=4.4e-20 Score=197.10 Aligned_cols=196 Identities=22% Similarity=0.390 Sum_probs=163.1
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl 584 (768)
.-.+++|+.|+.|++|....... .+........+.+|.+.|..++|++ +..+|++++.|+.+.|||+
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESK------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred ceeEeeccCCCcEEEEecccccc------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEc
Confidence 45678899999999996654421 1233456678899999999999999 5668999999999999999
Q ss_pred C--CCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207 585 E--SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (768)
Q Consensus 585 ~--t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~ 661 (768)
+ +.++.....+|.+.|.|++|+| ++.+|||||.|++|++||+++...++.++.+|...|.+|.|+|....+|++++.
T Consensus 258 R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred CCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence 9 5667778889999999999999 577899999999999999999888899999999999999999999999999999
Q ss_pred CCcEEEEECCCCee------------EEEEec---CCCeeEEEEecCCCE-EEEEEcCCeEEEEECCC
Q 004207 662 NSEIRYWSINNGSC------------AGVFKC---QSGATQMRFQPRLGR-ILAAAIENYISILDVET 713 (768)
Q Consensus 662 Dg~I~iWDl~sg~~------------i~~~~~---~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t 713 (768)
|+.+.|||+..-.. ...|.+ ...|..+.|+|+..+ |++++.|+.+.||.+..
T Consensus 338 D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 338 DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99999999964211 112322 345888999999887 44567889999998865
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=206.89 Aligned_cols=235 Identities=17% Similarity=0.284 Sum_probs=192.3
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCC-CCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDD-ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~ 575 (768)
...+.+++.+.+|.+++.|+.|++|....+ .++ .++.-|...|.+|+. ++.+|++|+.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------------------~ti~~~g~~v~~ia~--~s~~f~~~s~ 74 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------------------ETIDISGELVSSIAC--YSNHFLTGSE 74 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------------------chhhccCceeEEEee--cccceEEeec
Confidence 445566777889999999999999954433 111 111126667888877 5669999999
Q ss_pred CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l 655 (768)
+++|.+|...+++.-..+...+-++.+++|+-+|+++|.||.|-.|++-++.+... ...+.+|.++|.+|.|+|.++ +
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~-f 152 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGN-F 152 (933)
T ss_pred cceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-heeecccCCceeeeeEcCCCC-E
Confidence 99999999988876666666678899999999999999999999999999988765 788999999999999999976 7
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEec---------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEe
Q 004207 656 LCSCDNNSEIRYWSINNGSCAGVFKC---------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELW 726 (768)
Q Consensus 656 LaSgs~Dg~I~iWDl~sg~~i~~~~~---------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iw 726 (768)
||+.+.||.|+|||+.++.+..++.. ...+..++|+|+++.+++.+.|+.|.+|+..+......+.
T Consensus 153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr----- 227 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR----- 227 (933)
T ss_pred EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-----
Confidence 77888899999999999888776653 2235678999999999999999999999988865543221
Q ss_pred ecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 727 NMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 727 d~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...|...+.++.|+|+|.|||+++.||.|.|||
T Consensus 228 ---------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 228 ---------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred ---------ccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 123445599999999999999999999999997
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=5.7e-20 Score=210.55 Aligned_cols=206 Identities=24% Similarity=0.463 Sum_probs=184.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~t-l~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~ 631 (768)
.|...|.|..|+ ..++++++.|.+|++||..++..+.. +.+|.+.|++++|...+.+|++|+.|.+++|||+.++.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 356778999997 67899999999999999999998888 999999999999988788999999999999999998876
Q ss_pred eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 710 (768)
Q Consensus 632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD 710 (768)
..++.+|.+.|.++...+ .++++|+.|.+|++|++.++.++..+. +...|.++.++ +.++++|+.|++|.+||
T Consensus 284 -~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 284 -THSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred -EEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 899999999999998874 477789999999999999999999999 67889999988 67999999999999999
Q ss_pred CCCceEeeecc------------------------eeEEeecCCC-ce-EEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207 711 VETQVCRLKLQ------------------------TLELWNMTEN-KT-LTLSAHDKLVSSLAASTVNGMVASASHDKCV 764 (768)
Q Consensus 711 ~~t~~~~~~~~------------------------~I~iwd~~~~-~~-~~l~~H~~~I~sla~spdg~~LaSgs~DG~V 764 (768)
+.++++...+. .|++||+.+. ++ .++.+|.+.|..+.+. +.+|++++.|++|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTI 435 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccccccE
Confidence 99988877654 6999999998 44 4788999988777765 7899999999999
Q ss_pred EEeC
Q 004207 765 KIWK 768 (768)
Q Consensus 765 ~IWD 768 (768)
++||
T Consensus 436 k~WD 439 (537)
T KOG0274|consen 436 KLWD 439 (537)
T ss_pred EEee
Confidence 9997
No 102
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.3e-19 Score=185.33 Aligned_cols=208 Identities=19% Similarity=0.315 Sum_probs=167.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~ 633 (768)
..+.|.++.|+|.+..|+++++||.+++||+........+. |..++.+++|.++ ..+++|+.||.|+++|+.++. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCc--c
Confidence 35679999999999999999999999999999876655554 8899999999974 679999999999999999876 3
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
..+..|..+|.||.+.+... .+++|+.|++|++||.+...++..+.....|.++... ++.|++|+.|..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 56667999999999997654 6669999999999999987777777777778777665 55899999999999999987
Q ss_pred ceEeeecc-----------------------------eeEEeecC---CCceEEeccCCC---------CeeEEEEeCCC
Q 004207 714 QVCRLKLQ-----------------------------TLELWNMT---ENKTLTLSAHDK---------LVSSLAASTVN 752 (768)
Q Consensus 714 ~~~~~~~~-----------------------------~I~iwd~~---~~~~~~l~~H~~---------~I~sla~spdg 752 (768)
........ .++.+|.. ..+...+..|.. +|++|+|+|-.
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 54322110 33333333 123335666643 69999999999
Q ss_pred CEEEEEECCCcEEEeC
Q 004207 753 GMVASASHDKCVKIWK 768 (768)
Q Consensus 753 ~~LaSgs~DG~V~IWD 768 (768)
..||||+.||.|.+||
T Consensus 245 ~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWD 260 (323)
T ss_pred ceEEecCCCceEEEcc
Confidence 9999999999999997
No 103
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=3.6e-21 Score=202.75 Aligned_cols=216 Identities=21% Similarity=0.354 Sum_probs=181.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl 626 (768)
..+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4467899999999999998999999999999999987766 66788888899999999999999999999999999999
Q ss_pred CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 004207 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 706 (768)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I 706 (768)
+.... ..++.+|...|+++.|.-.... +++|+.|.+|++||+....|.+++-....+..|+.++ ..++++-.|++|
T Consensus 249 d~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~--~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 249 DSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI--SDVISGHFDKKV 324 (459)
T ss_pred cchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecc--eeeeecccccce
Confidence 98664 7899999999999999876443 7799999999999999999998887777777777763 467888899999
Q ss_pred EEEECCCceEeeecc------------------------eeEEeecCCCceEE-ecc----CCCCeeEEEEeCCCCEEEE
Q 004207 707 SILDVETQVCRLKLQ------------------------TLELWNMTENKTLT-LSA----HDKLVSSLAASTVNGMVAS 757 (768)
Q Consensus 707 ~IwD~~t~~~~~~~~------------------------~I~iwd~~~~~~~~-l~~----H~~~I~sla~spdg~~LaS 757 (768)
++||.++..+..... ++.+.|..+..+.. +.+ .....+.+.|||++.|+++
T Consensus 325 RfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred EEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence 999998876655443 56666766655542 211 1223889999999999999
Q ss_pred EECCCcEEEeC
Q 004207 758 ASHDKCVKIWK 768 (768)
Q Consensus 758 gs~DG~V~IWD 768 (768)
||.||.|+||+
T Consensus 405 GS~dgsv~iW~ 415 (459)
T KOG0288|consen 405 GSADGSVYIWS 415 (459)
T ss_pred ccCCCcEEEEE
Confidence 99999999996
No 104
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=5.4e-20 Score=198.00 Aligned_cols=209 Identities=19% Similarity=0.290 Sum_probs=167.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTV 621 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~----~~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtI 621 (768)
....+++|+..|.++++.|.|..|++|+.|.+|++||+.... ..+.+ ......|.++.|++.+..|++.+....+
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 345678999999999999999999999999999999986532 12222 2234569999999999999999989999
Q ss_pred EEEECCCCCee-----------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec------CC
Q 004207 622 RVWDTENPDYS-----------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC------QS 683 (768)
Q Consensus 622 rVWDl~t~~~~-----------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~------~~ 683 (768)
+|+|-+..... +...++|...++|.+|+|..+..|++|+.||+++|||+.+.+ ...+|+. ..
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 99997643321 123468999999999999999999999999999999998643 3444443 23
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC--CeeEEEEeCCCCEEEEEECC
Q 004207 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK--LVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~--~I~sla~spdg~~LaSgs~D 761 (768)
.++.++|++++..|++|+.||.|-+|+......... ...-.+|.. .|+||.|+++|++|++-|.|
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~-------------~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV-------------MKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccc-------------eEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 478999999999999999999999999865432211 112347877 89999999999999999999
Q ss_pred CcEEEeC
Q 004207 762 KCVKIWK 768 (768)
Q Consensus 762 G~V~IWD 768 (768)
++++|||
T Consensus 386 ~tLKvWD 392 (641)
T KOG0772|consen 386 DTLKVWD 392 (641)
T ss_pred Cceeeee
Confidence 9999997
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.2e-20 Score=190.59 Aligned_cols=207 Identities=20% Similarity=0.343 Sum_probs=177.2
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW 624 (768)
+..++.+.+|.+.|+.++.......+.+++.|.+.+||.+++++|+.++.+|.+.|++|+|++.+.+++|++.|++.+||
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 34566778999999999988777789999999999999999999999999999999999999999999999999999999
Q ss_pred ECC------C---------------------------------CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207 625 DTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (768)
Q Consensus 625 Dl~------t---------------------------------~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I 665 (768)
... . -..++..+.+|.+.|.+..|...|.. +++++.|.+.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTA 296 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTA 296 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeeccccc
Confidence 721 0 01134567899999999999988774 5599999999
Q ss_pred EEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCee
Q 004207 666 RYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVS 744 (768)
Q Consensus 666 ~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~ 744 (768)
.+||+++++.+..+.++ ...+.++-+|....+++.+.|.+.++||++.... .+..|.+|.+.|+
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~---------------sV~VFQGHtdtVT 361 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ---------------SVAVFQGHTDTVT 361 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc---------------eeeeeccccccee
Confidence 99999999999998864 4578888999988899999999999999984321 1235679999999
Q ss_pred EEEEeCCCCEEEEEECCCcEEEeC
Q 004207 745 SLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 745 sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++.|..+. .+++|++|.+|+|||
T Consensus 362 S~vF~~dd-~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 362 SVVFNTDD-RVVSGSDDRTVKVWD 384 (481)
T ss_pred EEEEecCC-ceeecCCCceEEEee
Confidence 99998754 588999999999997
No 106
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=6.5e-20 Score=191.39 Aligned_cols=205 Identities=20% Similarity=0.380 Sum_probs=171.7
Q ss_pred ecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCC----------------CeEEEEeccCCCCEEEEEEcCC-CCE
Q 004207 551 IPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----------------FTVKSTLEEHTQWITDVRFSPS-LSR 611 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg--~~LaSgs~Dg~I~VWdl~t----------------~~~~~tl~~h~~~V~sl~fspd-g~~ 611 (768)
..+|.+.|..+..++-+ .+.++-+..|.|.||++.. .+++.++.+|...=+.|+|||- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34677778888877754 4667778899999998742 4567888999999999999993 345
Q ss_pred EEEEeCCCcEEEEECCCCCeeE--EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC---eeEEEEecCCCee
Q 004207 612 LATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGAT 686 (768)
Q Consensus 612 LaTgs~DgtIrVWDl~t~~~~~--~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg---~~i~~~~~~~~i~ 686 (768)
|+||..-+.|++|...++...+ ..+.+|...|-.|+|+|..+.+|++|+.||+|+|||+|.+ .++.+-.+.+.|.
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 8899888999999998876543 5677899999999999999999999999999999999998 5666655678899
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEE
Q 004207 687 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVK 765 (768)
Q Consensus 687 sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~ 765 (768)
.+.|+.+...|++|+.||+++|||++..+.. ..+..+.-|..+|++|.|+|.. ..|+++|.|..|.
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~-------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSG-------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCC-------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 9999999888999999999999999885432 2234677899999999999865 6888999999999
Q ss_pred EeC
Q 004207 766 IWK 768 (768)
Q Consensus 766 IWD 768 (768)
|||
T Consensus 374 iWD 376 (440)
T KOG0302|consen 374 IWD 376 (440)
T ss_pred EEE
Confidence 997
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=199.68 Aligned_cols=260 Identities=18% Similarity=0.289 Sum_probs=204.7
Q ss_pred cccCCCCCceEEEEecCCCC--------------cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCcccccccc
Q 004207 474 LQHNGASSKSLLMFGSDGMG--------------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (768)
Q Consensus 474 l~~s~s~~~~~l~~~~~~~~--------------~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~ 539 (768)
..+.++++..+..|...... ...+....+..+++.+.++|.|.+|++|....+.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~------------ 106 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN------------ 106 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc------------
Confidence 45778889999999876432 2233355667888899999999999999665431
Q ss_pred CCCceeeEEEEecCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCeE--E--------EEec-cCCCCEEEEEEcC
Q 004207 540 GKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFTV--K--------STLE-EHTQWITDVRFSP 607 (768)
Q Consensus 540 ~~~~~~~~~~~l~~H~~~I~sl~f-Spdg~~LaSgs~Dg~I~VWdl~t~~~--~--------~tl~-~h~~~V~sl~fsp 607 (768)
-.++.+++.|++.|.|+++ .++..++|+||-|+.|.|||+.++.. + ..+. ++...|++++.++
T Consensus 107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 1346778899999999999 77888999999999999999997622 2 2223 7888999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCee
Q 004207 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT 686 (768)
Q Consensus 608 dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~ 686 (768)
.+..|++|+..+.|++||.++.+. +..+.+|...|.++..+++|..+| +++.||+|++||+...+|+.++.. ...|.
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred cceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceeeeEEeccCceE
Confidence 999999999999999999999876 666779999999999999998666 888999999999999999998875 45688
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 687 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 687 sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
++..+|+-.++++|+.|+.|+.-|+++.... ..+...+.+|..+..+....-+.+++.|+.|+-
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~----------------tlick~daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS----------------TLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEecccCCchhh----------------eEeecCCCchhhhhhccccCCceeeecccccee
Confidence 9999999999999999999999998874211 111123334555555544444466667777777
Q ss_pred eC
Q 004207 767 WK 768 (768)
Q Consensus 767 WD 768 (768)
|.
T Consensus 324 W~ 325 (735)
T KOG0308|consen 324 WK 325 (735)
T ss_pred cC
Confidence 63
No 108
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.1e-18 Score=178.39 Aligned_cols=255 Identities=18% Similarity=0.324 Sum_probs=185.8
Q ss_pred cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeC
Q 004207 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGH 575 (768)
Q Consensus 498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~ 575 (768)
....++.+++.+|++|.|.+|++|.+.++ ..++......+.|.+.|..|.|.+ -|..+|+|+.
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 34445668899999999999999976332 345666777889999999999976 5889999999
Q ss_pred CCcEEEEECC---------CCeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCee------------
Q 004207 576 DKKAVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS------------ 632 (768)
Q Consensus 576 Dg~I~VWdl~---------t~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~~~------------ 632 (768)
|++|.||.-. ......++......|++|.|.|. |-.||+++.||+||||+.-..-..
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 9999999642 12234566777889999999995 778999999999999997653321
Q ss_pred EEEeecCCCCeEEEEEeCCC--CeEEEEEeCC-----CcEEEEECCCC--eeE--EEEe-cCCCeeEEEEecCCC----E
Q 004207 633 LRTFTGHSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCA--GVFK-CQSGATQMRFQPRLG----R 696 (768)
Q Consensus 633 ~~~~~~h~~~V~slafsp~g--~~lLaSgs~D-----g~I~iWDl~sg--~~i--~~~~-~~~~i~sl~fsp~~~----~ 696 (768)
+.....+..+..||.|+|.. ..+|++|+.+ +.++||..... +.. .++. +..+|+.++|.|+-+ .
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence 11122466778999999752 3467777754 47888876432 222 2222 367899999999754 3
Q ss_pred EEEEEcCCeEEEEECCCceEeeecc----eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 697 ILAAAIENYISILDVETQVCRLKLQ----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 697 llags~Dg~I~IwD~~t~~~~~~~~----~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|++++.|| |+||.+........-. ...+.++.-.++..+..|.+.|..+.|+-.|..|++.|.||+|++|+
T Consensus 242 lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 242 LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 77888888 9999997532111000 11112222233445779999999999999999999999999999995
No 109
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.1e-19 Score=193.22 Aligned_cols=251 Identities=17% Similarity=0.247 Sum_probs=186.4
Q ss_pred cCCCCEEEeecCCCcEEEeec--CCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 004207 503 TDMDRFVDDGSLDDNVESFLS--PDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKA 579 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I 579 (768)
.+.++|+|.|..|..|.+|+. .+...+...++....-.+...-+.-..-.+|++.|.+++|+..- +.||+||.|.+|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 456789999999999999943 23333322233221111111111122345799999999998854 479999999999
Q ss_pred EEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 580 VLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 580 ~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
++||+.++++..++..|.+.|.++.|+|. ..+|++|+.|++|.+.|.+.....-..+. ..+.|-.++|+|.....+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEE
Confidence 99999999999999999999999999995 77999999999999999996544333343 35789999999999989999
Q ss_pred EeCCCcEEEEECCC-CeeEEEEec-CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEE
Q 004207 659 CDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLT 735 (768)
Q Consensus 659 gs~Dg~I~iWDl~s-g~~i~~~~~-~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~ 735 (768)
+..||+|+-+|+|+ ++++.++.. ..+|.++++++... .+++++.|+.|++|++.......... -++ .
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~----~~~------~ 417 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE----HSF------K 417 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc----ccc------c
Confidence 99999999999997 488888875 56799999987654 47778899999999986643321100 000 0
Q ss_pred eccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207 736 LSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 736 l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD 768 (768)
-+...|.++.|+- .+++.|+..+.++|||
T Consensus 418 ----~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 418 ----LGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred ----ccceeecccCCCcceEEEecCccceEEEee
Confidence 1125566777776 4677888888899997
No 110
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=1.7e-19 Score=180.65 Aligned_cols=201 Identities=18% Similarity=0.301 Sum_probs=169.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 625 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~--tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWD 625 (768)
+.+.+|...|.+|+|+.+|..|++|+.|+++.||+++..+... ...+|.+.|-.++|+| ....|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5567899999999999999999999999999999998775543 4478999999999988 467999999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~ 705 (768)
++.+++...+.. ..+ =.-+.|+|+|.+ +++++.|..|.+.|.++.+.+........+..++|+-++..++....-|+
T Consensus 94 ~r~~k~~~~i~~-~~e-ni~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCTARIET-KGE-NINITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEEEEeec-cCc-ceEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 999887444443 233 345889999885 55788899999999999998888887788899999977777777777799
Q ss_pred EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|.|......+. +..+.+|.....||.|+|+|+|||+|+.|-.|.+||
T Consensus 171 v~ILsypsLkp----------------v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 171 VEILSYPSLKP----------------VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWD 217 (313)
T ss_pred EEEEecccccc----------------ccccccCCcceEEEEECCCCceEeeccccceeeccC
Confidence 98887665433 335669999999999999999999999999999998
No 111
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.83 E-value=2.2e-19 Score=208.63 Aligned_cols=223 Identities=17% Similarity=0.307 Sum_probs=182.6
Q ss_pred ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 574 (768)
Q Consensus 495 ~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs 574 (768)
-.+.++.+.+.+.++|+||.|..|.+|.... ......++..-.....+.|+.+..+++|...|..++|+|++.+||+++
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS 148 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec
Confidence 3445566677889999999999999996654 212222222223344567899999999999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe-----------------------
Q 004207 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----------------------- 631 (768)
Q Consensus 575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~----------------------- 631 (768)
.|++|.|||..+++.+.++.+|.+.|..+.|.|-|+|||+-+.|++|+||++.+...
T Consensus 149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 999999999999999999999999999999999999999999999999999642100
Q ss_pred ----------------------------eEEEeecCCCCeEEEEEeCC--------CC--------eEEEEEeCCCcEEE
Q 004207 632 ----------------------------SLRTFTGHSTTVMSLDFHPS--------KE--------DLLCSCDNNSEIRY 667 (768)
Q Consensus 632 ----------------------------~~~~~~~h~~~V~slafsp~--------g~--------~lLaSgs~Dg~I~i 667 (768)
.-..+.||.+++.++.|+|. |. .++|+|+.|++|.|
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 01245689999999999982 11 27889999999999
Q ss_pred EECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee
Q 004207 668 WSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718 (768)
Q Consensus 668 WDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~ 718 (768)
|.....+++.++.. ...|..++|+|+|-.|++++.||+|.++.++..+...
T Consensus 309 W~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 309 WNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred EecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 99977777666543 6789999999999999999999999999998765443
No 112
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=5.3e-21 Score=212.68 Aligned_cols=204 Identities=26% Similarity=0.480 Sum_probs=182.6
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl 626 (768)
+.+.+..|...|.|+..-..++.+++|+.|..+.+|.+.....+..+.+|..+|.||.|+++..+|++|+.+|+|++||+
T Consensus 20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 34556789999999998778899999999999999999888888889999999999999999999999999999999999
Q ss_pred CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecCCCEEEEEEcCCe
Q 004207 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~~~~llags~Dg~ 705 (768)
+..+. ++++.+|...+.+|+|+|-+. ++++|+.|+.+++||++...|++.+..+ ..+..+.|+|+|.+++.++.|..
T Consensus 100 eeAk~-vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 100 EEAKI-VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhh-hhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 98765 889999999999999999976 5589999999999999988888888864 34677899999999999999999
Q ss_pred EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.|||+..++... +|..|.+.|.++.|+|..-++++||.|++|++||
T Consensus 178 vki~d~~agk~~~----------------ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d 224 (825)
T KOG0267|consen 178 VKIWDLTAGKLSK----------------EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD 224 (825)
T ss_pred eeeeccccccccc----------------ccccccccccccccCchhhhhccCCCCceeeeec
Confidence 9999988766543 3448999999999999999999999999999997
No 113
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.5e-18 Score=185.18 Aligned_cols=253 Identities=15% Similarity=0.237 Sum_probs=193.2
Q ss_pred cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEe
Q 004207 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGG 574 (768)
Q Consensus 496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs 574 (768)
.+.+..+++...++.+++.|+++++|-.... .-..+..+.-...+|.+++|.|+|. .+++++
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk-----------------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-----------------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCc-----------------cChhheeeeeccCccceeeecCCCceEEEecc
Confidence 3445556667789999999999999954222 2223455555677899999999999 899999
Q ss_pred CCCcEEEEECCCCeEEE--EeccCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207 575 HDKKAVLWCTESFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (768)
Q Consensus 575 ~Dg~I~VWdl~t~~~~~--tl~~h~-~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~ 651 (768)
....++.||+.+.+... .+.++. ..+.....++++++|+..+..|.|.+....+++. +.+++ -.+.|..++|+.+
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSd 355 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSD 355 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecC
Confidence 99999999999876543 233333 3567788899999999999999999999988775 55555 4578999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe--eEEEEecCCCEEEEEEcCCeEEEEECCCceEe------eecc--
Q 004207 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIENYISILDVETQVCR------LKLQ-- 721 (768)
Q Consensus 652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i--~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~------~~~~-- 721 (768)
++.++++| .+|.|.+||++...|++.+...+.| +++|.++++.++++|+..|.|.|||..+.... ..+.
T Consensus 356 sk~l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL 434 (514)
T KOG2055|consen 356 SKELLASG-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL 434 (514)
T ss_pred CcEEEEEc-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence 98777555 5889999999999999999876665 56777899999999999999999996543111 1110
Q ss_pred -------------------------eeEEeecCCCceEE-ec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 -------------------------TLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 -------------------------~I~iwd~~~~~~~~-l~---~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+++..+.+-.++. +. ..-+.|+||+|+|.+.+||.|..+|.|.+|+
T Consensus 435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 45555555444432 11 2234699999999999999999999999995
No 114
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=9.9e-19 Score=195.28 Aligned_cols=224 Identities=18% Similarity=0.276 Sum_probs=185.1
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
...++++|+ .+.+++|+.... ++++++.. +.|.|..|.|.++++++|...|.+.|||+
T Consensus 384 d~~~~~Sga-~~SikiWn~~t~-------------------kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 384 DSILLASGA-GESIKIWNRDTL-------------------KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred CceeeeecC-CCcEEEEEccCc-------------------ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 344555554 467888854322 34444433 37999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CCe-e-E-----EEeecCCCCeEEEEEeCCC
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----PDY-S-L-----RTFTGHSTTVMSLDFHPSK 652 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t-----~~~-~-~-----~~~~~h~~~V~slafsp~g 652 (768)
.+...+.++..|.+.|++++.+||++.++|||.|.+|++||..- +.. . + +++ .-...|.|+.++||+
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDG 520 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999741 111 0 1 112 235679999999998
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCC
Q 004207 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTEN 731 (768)
Q Consensus 653 ~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~ 731 (768)
. +||++--|.+|+||-+.+-+....+.+ .-+|.|+.++|++..+++|+.|..|+||-+.-+.|...
T Consensus 521 k-~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS------------ 587 (888)
T KOG0306|consen 521 K-LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS------------ 587 (888)
T ss_pred c-EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh------------
Confidence 7 677888899999999998887766665 56799999999999999999999999998887777543
Q ss_pred ceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 732 KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 732 ~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.+|.+.|.+|.|.|...+|+++|.|+.|+-||
T Consensus 588 ----~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 588 ----FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred ----hhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 449999999999999999999999999999997
No 115
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=5e-19 Score=184.80 Aligned_cols=252 Identities=19% Similarity=0.294 Sum_probs=182.9
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWd 583 (768)
.+.+.++.+..|.|.+|.....-..... .--......++++.++.+|.+.=+.|+||| ....|++|..-+.|++|.
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~---~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~ 240 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSE---PGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWE 240 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcC---ccccccccccCceEEecccCccceeeecccccccccccCccccceEeee
Confidence 4567788899999999954322110000 000112245678899999999999999999 233578888788899998
Q ss_pred CCCCeEE---EEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-CeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 584 TESFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 584 l~t~~~~---~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~-~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
..++.-. .-+.+|+..|..++|+|. ...|++||.||+|+|||++.+ +......+.|.+.|..|.|+.... +|++
T Consensus 241 ~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLas 319 (440)
T KOG0302|consen 241 PSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLAS 319 (440)
T ss_pred eccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeee
Confidence 8775432 345679999999999996 568999999999999999986 333445588999999999998866 8999
Q ss_pred EeCCCcEEEEECCC---CeeEEEEec-CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecc--eeE-EeecCC
Q 004207 659 CDNNSEIRYWSINN---GSCAGVFKC-QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQ--TLE-LWNMTE 730 (768)
Q Consensus 659 gs~Dg~I~iWDl~s---g~~i~~~~~-~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~--~I~-iwd~~~ 730 (768)
|+.||+++|||+|. +.++..|+. ..+|+++.|+|... .|++++.|+.|.|||+....-..... ... +-|+.
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlP- 398 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLP- 398 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCC-
Confidence 99999999999986 556777774 67899999999755 47777899999999996543211000 000 11111
Q ss_pred CceEEeccC--CCCeeEEEEeCCC-CEEEEEECCCc
Q 004207 731 NKTLTLSAH--DKLVSSLAASTVN-GMVASASHDKC 763 (768)
Q Consensus 731 ~~~~~l~~H--~~~I~sla~spdg-~~LaSgs~DG~ 763 (768)
...+..| ...|..|.|++.- .+|++.+.||.
T Consensus 399 --pQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 399 --PQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred --ceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 1122234 4568899999865 68889888884
No 116
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=5.3e-19 Score=194.65 Aligned_cols=252 Identities=17% Similarity=0.256 Sum_probs=183.6
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW 582 (768)
...+.+++.+..||.|.+|+..... .+ .....++...+|...|..+.|.|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~------fr-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIV------FR-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhh------cc-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 4467889999999999999543221 11 1112245667999999999999966689999999999999
Q ss_pred ECCCCeEEEE--eccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCe--------------------------eE
Q 004207 583 CTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--------------------------SL 633 (768)
Q Consensus 583 dl~t~~~~~t--l~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~--------------------------~~ 633 (768)
|+++.+++.. +.+|.+.|.+++|.|. ...|++|+.||.|.|||++-... .+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999998876 8999999999999995 56899999999999999873220 01
Q ss_pred EEeecCCCCeEE---EEEeCCCCeEEEEEeC-CCcEEEEECCCCeeEEEEe------c------CCCeeEEEEecCCCEE
Q 004207 634 RTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK------C------QSGATQMRFQPRLGRI 697 (768)
Q Consensus 634 ~~~~~h~~~V~s---lafsp~g~~lLaSgs~-Dg~I~iWDl~sg~~i~~~~------~------~~~i~sl~fsp~~~~l 697 (768)
.....+...|.+ +.+.-|.. .|++++. |+.|+|||++...+..... . ..++.++..+..|.++
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 122334444444 33444544 4556665 9999999999754432221 1 2347788888889999
Q ss_pred EEEEcCCeEEEEECCCceEeee----------cc-------------------eeEEeecCCCc--eEEeccCCCCeeEE
Q 004207 698 LAAAIENYISILDVETQVCRLK----------LQ-------------------TLELWNMTENK--TLTLSAHDKLVSSL 746 (768)
Q Consensus 698 lags~Dg~I~IwD~~t~~~~~~----------~~-------------------~I~iwd~~~~~--~~~l~~H~~~I~sl 746 (768)
++.+.|+.|++|++.+...... +. ...+|.+.... ...+.+|.-.|++|
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V 366 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTV 366 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEE
Confidence 9999999999999976422111 00 55666655433 33567899999999
Q ss_pred EEeCCC-CEEEEEECCCcEEEeC
Q 004207 747 AASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 747 a~spdg-~~LaSgs~DG~V~IWD 768 (768)
+|.|.. .-++++++|-.++||+
T Consensus 367 ~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 367 RWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred eeccccCCCceeeccCcceEEEe
Confidence 998754 4577779999999996
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.2e-19 Score=180.05 Aligned_cols=203 Identities=21% Similarity=0.324 Sum_probs=166.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~---~~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrVWD 625 (768)
-..|.+.|..+...--|+.||||+.|++|+|+.++.. +++.++.+|.++|+.++|.. -|.+||+|++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3578889999888888999999999999999998763 57889999999999999965 599999999999999999
Q ss_pred CCCCCe-eEEEeecCCCCeEEEEEeCCCC-eEEEEEeCCCcEEEEECCCC--eeEE--EEecCCCeeEEEEecC---C--
Q 004207 626 TENPDY-SLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNG--SCAG--VFKCQSGATQMRFQPR---L-- 694 (768)
Q Consensus 626 l~t~~~-~~~~~~~h~~~V~slafsp~g~-~lLaSgs~Dg~I~iWDl~sg--~~i~--~~~~~~~i~sl~fsp~---~-- 694 (768)
-+.+.. ....+..|...|++|+|.|.+. .+|++++.||.|.|++.++. -... .+.+.-++++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 987753 2356678999999999998753 46778889999999988754 1221 2224567899999886 3
Q ss_pred ---------CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC----CEEEEEECC
Q 004207 695 ---------GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN----GMVASASHD 761 (768)
Q Consensus 695 ---------~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg----~~LaSgs~D 761 (768)
..|++|+.|+.|+||+.....-. + ..++.+|.+.|+.++|.|.- .+||++|.|
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~----------~----e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK----------L----ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchh----------h----hhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 45999999999999998875211 1 11367999999999999975 489999999
Q ss_pred CcEEEe
Q 004207 762 KCVKIW 767 (768)
Q Consensus 762 G~V~IW 767 (768)
|+|.||
T Consensus 233 g~viIw 238 (299)
T KOG1332|consen 233 GTVIIW 238 (299)
T ss_pred CcEEEE
Confidence 999999
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=5.2e-19 Score=179.40 Aligned_cols=212 Identities=21% Similarity=0.345 Sum_probs=170.2
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe----------EEEE-----eccCCCCEEEEEEcC-CCCEE
Q 004207 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKST-----LEEHTQWITDVRFSP-SLSRL 612 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~----------~~~t-----l~~h~~~V~sl~fsp-dg~~L 612 (768)
..+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++... .+.. -.+|...|.++.|-| |...|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3467899999999988 79999999999999999997533 1111 135888999999999 56688
Q ss_pred EEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEE
Q 004207 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 689 (768)
Q Consensus 613 aTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~ 689 (768)
.+++.|.+++|||.++-.. ...|+ -.+.|++-+|+|- ...++++|..|-.|++-|+.+|.+.+++.+ ...|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 9999999999999998654 33443 4567888888874 356888999999999999999999999986 56799999
Q ss_pred EecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc---eE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207 690 FQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENK---TL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 764 (768)
Q Consensus 690 fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~---~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V 764 (768)
|+|...+ |++|+.||.|++||++.... ++++.|...++ .+ +-.+|.+.|+.++|+.++.++++++.|..+
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasg-----cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASG-----CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccc-----eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 9999888 45677899999999986521 23333443322 12 355899999999999999999999999999
Q ss_pred EEeC
Q 004207 765 KIWK 768 (768)
Q Consensus 765 ~IWD 768 (768)
++|+
T Consensus 271 r~wn 274 (397)
T KOG4283|consen 271 RVWN 274 (397)
T ss_pred EEee
Confidence 9996
No 119
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=1.1e-19 Score=188.72 Aligned_cols=214 Identities=19% Similarity=0.326 Sum_probs=174.8
Q ss_pred EEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 547 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
.+..+.+|.+.|.|++=+|.. ..+++|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|++|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 456678999999999999977 6899999999999999999999999999999999999987 6789999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEE-cC
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA-IE 703 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags-~D 703 (768)
++.+ ++.++.+ .+.+..|+-+.. ..+++||+. .|.|||.....++..+.. -..|.++.|+|....|++++ +|
T Consensus 136 ~~~~--p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 136 IDGP--PLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ccCC--cceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 8863 4666664 456777776655 447888876 599999988888888876 45589999999877766555 99
Q ss_pred CeEEEEECCCceEeeecc------------------------eeEEeecCCC--ceEEeccCCCCeeEEEEeCCCCEEEE
Q 004207 704 NYISILDVETQVCRLKLQ------------------------TLELWNMTEN--KTLTLSAHDKLVSSLAASTVNGMVAS 757 (768)
Q Consensus 704 g~I~IwD~~t~~~~~~~~------------------------~I~iwd~~~~--~~~~l~~H~~~I~sla~spdg~~LaS 757 (768)
+.|.+||+++.....+.- .+..+|+..- .+....+|.+.|.+|+|+|.|.-|++
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred CceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence 999999999876554432 3344443321 12245688899999999999999999
Q ss_pred EECCCcEEEeC
Q 004207 758 ASHDKCVKIWK 768 (768)
Q Consensus 758 gs~DG~V~IWD 768 (768)
||.|.+|+||.
T Consensus 290 gsyDksIRIf~ 300 (433)
T KOG0268|consen 290 GSYDKSIRIFP 300 (433)
T ss_pred ccccceEEEee
Confidence 99999999984
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.8e-18 Score=175.62 Aligned_cols=207 Identities=19% Similarity=0.338 Sum_probs=168.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~ 637 (768)
..||.|++.|.+||+|+.||.|.|||+.|..+-..+.+|..+|++++|+++|+.|+|+|.|..|.+||+..+.. +..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-LKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-eeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998764 22221
Q ss_pred cCCCCeEEEE-----------------------------------------------EeCCCCeEEEEEeCCCcEEEEEC
Q 004207 638 GHSTTVMSLD-----------------------------------------------FHPSKEDLLCSCDNNSEIRYWSI 670 (768)
Q Consensus 638 ~h~~~V~sla-----------------------------------------------fsp~g~~lLaSgs~Dg~I~iWDl 670 (768)
..++|+.+. |++.|+ ++++|...|.+.++|.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEecCcceEEEEec
Confidence 122333333 333444 5558888999999999
Q ss_pred CCCeeEEEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEe---------eecc------------------
Q 004207 671 NNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQVCR---------LKLQ------------------ 721 (768)
Q Consensus 671 ~sg~~i~~~~~~--~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~---------~~~~------------------ 721 (768)
.+.+|+..++.. ..|..+.|+-.+.+|+.-+.|..|+.|+++.-... +++.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 999999888753 56888999999999999999999999998632111 1111
Q ss_pred ----------eeEEeecCCCceEEe-ccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 ----------TLELWNMTENKTLTL-SAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ----------~I~iwd~~~~~~~~l-~~H~-~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+.+|....|.++.+ .+.+ .....|.|+|-...|++- ..|.|+||.
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 789999999888754 4555 567889999998888887 779999994
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.80 E-value=2.8e-18 Score=184.07 Aligned_cols=211 Identities=20% Similarity=0.360 Sum_probs=166.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~ 632 (768)
...|.+|.+.|||+.|++|+.-.+|.|||+..... ...+....-..++++.+||.+.+++|+.||.|.|||+.+.. .
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-L 543 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-e
Confidence 45699999999999999999999999999875443 33444333457889999999999999999999999999755 4
Q ss_pred EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (768)
Q Consensus 633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~ 712 (768)
++.|.+|...+.||+++++|..+. +|+-|.+|+.||++.+..+........|.++.+.|.+.++++|-..+.+.|....
T Consensus 544 VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 899999999999999999988655 9999999999999998877776667788888888888888888888888777664
Q ss_pred Cce---------Eeeecc---------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 713 TQV---------CRLKLQ---------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 713 t~~---------~~~~~~---------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
... |+..++ .+..|...-+..+.-....+.|.++.++.|.+||+|||.|....||
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 421 111111 2223333333333333456789999999999999999999888777
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3.6e-18 Score=175.09 Aligned_cols=200 Identities=15% Similarity=0.285 Sum_probs=153.1
Q ss_pred cccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC--EEE
Q 004207 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLA 571 (768)
Q Consensus 494 ~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~--~La 571 (768)
.|..+.-++.-..+++++||.|.+|++|+.... .++..+-.|.+.|++|.|.++-. +|+
T Consensus 41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~-------------------~qlg~ll~HagsitaL~F~~~~S~shLl 101 (362)
T KOG0294|consen 41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKR-------------------KQLGILLSHAGSITALKFYPPLSKSHLL 101 (362)
T ss_pred ccccceeEEEecceeEeccCCCCcEEEEeccch-------------------hhhcceeccccceEEEEecCCcchhhee
Confidence 344444455567889999999999999954322 34556678999999999999765 899
Q ss_pred EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC-----------
Q 004207 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS----------- 640 (768)
Q Consensus 572 Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~----------- 640 (768)
+|+.||.|.+|++...+++.++++|.+.|+.|+.+|.+++-++.+.|+.+++||+-+++.....-..+.
T Consensus 102 S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 102 SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD 181 (362)
T ss_pred eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC
Confidence 999999999999999999999999999999999999999999999999999999977653221111111
Q ss_pred ---------------------------CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEE--
Q 004207 641 ---------------------------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRF-- 690 (768)
Q Consensus 641 ---------------------------~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~f-- 690 (768)
..+.|+.|... . .+++|.+|+.|.+||..+..+...+..+ ..|-.+.+
T Consensus 182 ~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~-~-~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 182 HFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDG-S-ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred EEEEEeccEEEEEecccHhHhhhhhccccceeeeecCC-c-eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe
Confidence 12444444432 2 3457777888888888888888888774 34666653
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCc
Q 004207 691 QPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 691 sp~~~~llags~Dg~I~IwD~~t~ 714 (768)
.|++.+|+++++||.|+|||++..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 566778888889999999988765
No 123
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=6.7e-19 Score=192.06 Aligned_cols=249 Identities=18% Similarity=0.156 Sum_probs=189.0
Q ss_pred CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (768)
Q Consensus 493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS 572 (768)
+...+...++.+.+..+++++.|+++++|+..+.. ......+.++.+|++|.++|.|+++.+.+..+++
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-----------~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys 361 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-----------KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS 361 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-----------CccccceeeeEEEecccCceEEEEecCCceEEEe
Confidence 44455677788999999999999999999773321 2235567889999999999999999999999999
Q ss_pred EeCCCcEEEEECCC----------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCC
Q 004207 573 GGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (768)
Q Consensus 573 gs~Dg~I~VWdl~t----------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~ 642 (768)
|+.||+|+.|++.. .....++.||++.|+.+++|.....|++|+.||+||+|+......+........+.
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~ 441 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGY 441 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCC
Confidence 99999999996541 12345778999999999999998899999999999999987655422222223344
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~ 714 (768)
..+++|-.....+.++...-+.--++|+..+..+..+.. ...+..+.++|.....+++..|+.|++||..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 566776554322332332233333444554544444442 134677889999999999999999999999887
Q ss_pred eEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 715 VCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 715 ~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
..++.. .+|...++++++.|+|.+|++++.||.|++|+
T Consensus 522 ~~l~s~----------------~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 522 KILHSM----------------VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccchhe----------------eeccceecceeecCCCceEEeecCCceeehhh
Confidence 765433 37999999999999999999999999999995
No 124
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=3e-18 Score=183.06 Aligned_cols=228 Identities=16% Similarity=0.224 Sum_probs=184.8
Q ss_pred cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (768)
Q Consensus 496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~ 575 (768)
.+...++...++|+++|..|..|.+|...+ ...++.+.+|.+.|.+++|-....-|++++.
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t-------------------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDT-------------------LEHVKVFKGHRGAVSSLAFRKGTSELYSASA 264 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcc-------------------cchhhcccccccceeeeeeecCccceeeeec
Confidence 334555677889999999999999995432 2346668999999999999887778999999
Q ss_pred CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l 655 (768)
|++|++|+++....+.++.+|.+.|.+|....-++.+.+|+.|+++++|++.. ....++.+|.+.+-|++|-.+. -
T Consensus 265 Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~--H 340 (479)
T KOG0299|consen 265 DRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--H 340 (479)
T ss_pred CCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEeccc--c
Confidence 99999999999999999999999999999888778787888999999999953 3356788899999999998764 3
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEec-----CC--------CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecce
Q 004207 656 LCSCDNNSEIRYWSINNGSCAGVFKC-----QS--------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQT 722 (768)
Q Consensus 656 LaSgs~Dg~I~iWDl~sg~~i~~~~~-----~~--------~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~ 722 (768)
|++|+.||.|.+|++-..+++.+... .. =|++++..|....+++|+.+|.|++|-+..+....
T Consensus 341 fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i---- 416 (479)
T KOG0299|consen 341 FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI---- 416 (479)
T ss_pred eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc----
Confidence 66999999999999998888877653 11 36788999998999999999999999988763211
Q ss_pred eEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207 723 LELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 723 I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs 759 (768)
. ++.-..-.+.|++|+|+++|+.|++|-
T Consensus 417 -~--------~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 417 -N--------LLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred -c--------eeeecccccEEEEEEEccCCCEEEEec
Confidence 0 111112456799999999999666653
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.79 E-value=2e-17 Score=187.00 Aligned_cols=252 Identities=20% Similarity=0.282 Sum_probs=188.1
Q ss_pred cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCE-EEEEeCC
Q 004207 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL-LATGGHD 576 (768)
Q Consensus 498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~-LaSgs~D 576 (768)
....-.+.=.+|+.|..+|+|.+|+...+. .+..++-..+.|++|+|..||.. +|+|+..
T Consensus 206 T~ieqsPaLDVVaiG~~~G~ViifNlK~dk-------------------il~sFk~d~g~VtslSFrtDG~p~las~~~~ 266 (910)
T KOG1539|consen 206 TAIEQSPALDVVAIGLENGTVIIFNLKFDK-------------------ILMSFKQDWGRVTSLSFRTDGNPLLASGRSN 266 (910)
T ss_pred eEeccCCcceEEEEeccCceEEEEEcccCc-------------------EEEEEEccccceeEEEeccCCCeeEEeccCC
Confidence 344445666789999999999999765442 23444444689999999999985 6777778
Q ss_pred CcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe---eEEEeecCCCCeEEEEEeCCC
Q 004207 577 KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSK 652 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g 652 (768)
|.+.+||++..+....+. .|.+.|..+.|.|....++|++.|..+++|-.+++.. .++.-.||..+..||.|....
T Consensus 267 G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 267 GDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ 346 (910)
T ss_pred ceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence 999999999988887665 7889999999999999999999999999997765442 356667888888888887433
Q ss_pred CeEEEEEeCCCcEE-----------------------------------------------------------------E
Q 004207 653 EDLLCSCDNNSEIR-----------------------------------------------------------------Y 667 (768)
Q Consensus 653 ~~lLaSgs~Dg~I~-----------------------------------------------------------------i 667 (768)
.+.+.+++.|++++ .
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence 33444555555444 4
Q ss_pred EECCCCee-EEEEecC------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------
Q 004207 668 WSINNGSC-AGVFKCQ------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------------- 721 (768)
Q Consensus 668 WDl~sg~~-i~~~~~~------~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------------- 721 (768)
|+.++... .+++... ..+++++.++.|++.+.|++.|.|.+|++.++.....+.
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~ 506 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR 506 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc
Confidence 44433222 2222222 346788888888888888888888888888776655552
Q ss_pred --------------------------------------------------eeEEeecCCCceE-EeccCCCCeeEEEEeC
Q 004207 722 --------------------------------------------------TLELWNMTENKTL-TLSAHDKLVSSLAAST 750 (768)
Q Consensus 722 --------------------------------------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~sp 750 (768)
.|+++|..+.+++ .+.+|.+.|++++|||
T Consensus 507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~ 586 (910)
T KOG1539|consen 507 LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP 586 (910)
T ss_pred eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence 4555555544443 4668999999999999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 004207 751 VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 751 dg~~LaSgs~DG~V~IWD 768 (768)
||++|++++.|++|++||
T Consensus 587 DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 587 DGRWLISASMDSTIRTWD 604 (910)
T ss_pred CCcEEEEeecCCcEEEEe
Confidence 999999999999999998
No 126
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=2.9e-18 Score=182.95 Aligned_cols=261 Identities=13% Similarity=0.206 Sum_probs=194.7
Q ss_pred CCCceEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCe
Q 004207 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (768)
Q Consensus 479 s~~~~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I 558 (768)
...+.++.|++.. ...+|++|..-|.|-+|+.... ......+..+..|..+|
T Consensus 186 ~~Rit~l~fHPt~-------------~~~lva~GdK~G~VG~Wn~~~~---------------~~d~d~v~~f~~hs~~V 237 (498)
T KOG4328|consen 186 DRRITSLAFHPTE-------------NRKLVAVGDKGGQVGLWNFGTQ---------------EKDKDGVYLFTPHSGPV 237 (498)
T ss_pred ccceEEEEecccC-------------cceEEEEccCCCcEEEEecCCC---------------CCccCceEEeccCCccc
Confidence 3456666666633 2468999999999999976311 11123466778999999
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207 559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (768)
Q Consensus 559 ~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~ 635 (768)
.+|.|+| +-..|++.+.||+|++-|+++.... ..+......+.++.|+.+...++++..=|...+||+++++.....
T Consensus 238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~ 317 (498)
T KOG4328|consen 238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN 317 (498)
T ss_pred cceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh
Confidence 9999999 5557999999999999999875433 333334556788889888777888877789999999998876777
Q ss_pred eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC--e---eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--S---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (768)
Q Consensus 636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg--~---~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD 710 (768)
+.-|...|.+|+++|-..++|+||+.|++++|||+|.- + .+..+.+...|.+..|+|.++.|++.+.|+.|+|||
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 78899999999999999999999999999999999862 2 356666778899999999999999999999999999
Q ss_pred CC----Cce----E---------eeecc-----------------eeEEeecCCCceE-Eecc-CCCCeeEE-EEeCCCC
Q 004207 711 VE----TQV----C---------RLKLQ-----------------TLELWNMTENKTL-TLSA-HDKLVSSL-AASTVNG 753 (768)
Q Consensus 711 ~~----t~~----~---------~~~~~-----------------~I~iwd~~~~~~~-~l~~-H~~~I~sl-a~spdg~ 753 (768)
.. ... . ...++ .|.++|...++.+ .+.. ....|.++ .|+|-+.
T Consensus 398 ss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~ 477 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRD 477 (498)
T ss_pred cccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccccc
Confidence 84 111 1 11111 5666666666533 2222 22245544 7999888
Q ss_pred EEEEE-ECCCcEEEe
Q 004207 754 MVASA-SHDKCVKIW 767 (768)
Q Consensus 754 ~LaSg-s~DG~V~IW 767 (768)
.+++| +..|.|+||
T Consensus 478 ~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 478 TLAAGGNSSGKIYVF 492 (498)
T ss_pred ceeccCCccceEEEE
Confidence 55555 467888888
No 127
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=5.2e-18 Score=173.08 Aligned_cols=198 Identities=17% Similarity=0.259 Sum_probs=160.5
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-eEE-EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 552 PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-TVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 552 ~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~-~~~-~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
....+.|.+|+||| ...+++.++.|++|++|+++.. ..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 45567899999999 5567779999999999999862 332 44567999999999999999999999999999999999
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCC-eEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 707 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~-~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~ 707 (768)
+. +..+..|.++|.++.|-+... .+|+||+.|++|++||.|....+.++.....+.++..-.. .++++..+..|.
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~p--m~vVata~r~i~ 179 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYP--MAVVATAERHIA 179 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCc--eeEEEecCCcEE
Confidence 85 677788999999999976533 4788999999999999999999999998888888776543 688888999999
Q ss_pred EEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 708 ILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 708 IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+|++++.....+.. ...-+--+.||+...+....+.|+-+|.|-|.
T Consensus 180 vynL~n~~te~k~~--------------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 180 VYNLENPPTEFKRI--------------ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ 225 (347)
T ss_pred EEEcCCCcchhhhh--------------cCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence 99997754322110 01123347888888888878899988888763
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.3e-18 Score=174.35 Aligned_cols=210 Identities=18% Similarity=0.240 Sum_probs=155.9
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-----EEEeccCCCCEEEEEEcCCCCEEEE-EeCCCcE
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLAT-SSADRTV 621 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~-----~~tl~~h~~~V~sl~fspdg~~LaT-gs~DgtI 621 (768)
+..+++|.+.|+|++|+.||++|++++.|++|+||+++..+. ++.-. .-+..+.++|.||.+-++. +-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 456789999999999999999999999999999999987432 11111 1234688999999775544 4455689
Q ss_pred EEEECCC---CCeeE--------EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEE
Q 004207 622 RVWDTEN---PDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 689 (768)
Q Consensus 622 rVWDl~t---~~~~~--------~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~ 689 (768)
++|.+.. +.... .....|.-.|..+-.... ..+|.+|+.|..|.+||++ |..+..+.. ....+..+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 9998753 22111 122335556666665544 4577799999999999999 888877765 34456688
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 690 FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 690 fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+|+|+++++++..-.|++|.+--.+-.. +. +-.+.+.+.+|...|..++|+++...++|.|.||+++|||
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~-fq-------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGT-FQ-------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcc-hh-------hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 99999999999988889999763221110 00 1123457789999999999999999999999999999997
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.1e-17 Score=179.40 Aligned_cols=235 Identities=16% Similarity=0.218 Sum_probs=186.2
Q ss_pred cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCC-CCCeEEEEEcCCCCEEEEEe
Q 004207 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGG 574 (768)
Q Consensus 496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H-~~~I~sl~fSpdg~~LaSgs 574 (768)
++.+.++....+.||.+-.||+|++|+.... +-....+.++ +..|.+++|+ ++..|++.+
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g 87 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIESLAWA-EGGRLFSSG 87 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceeeEEEc-cCCeEEeec
Confidence 3344455556777999999999999966433 1222333444 5689999999 556678888
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE-EEeecCCCCeEEEEEeCCCC
Q 004207 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKE 653 (768)
Q Consensus 575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~-~~~~~h~~~V~slafsp~g~ 653 (768)
.+|.|.-||+.+++.+..+....+.|++++.+|.+..++.|+.||.+..++...+.... +.+...++.|.+++|+|++.
T Consensus 88 ~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 88 LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 99999999999999999999999999999999999999999999988888887665433 34455678999999999976
Q ss_pred eEEEEEeCCCcEEEEECCCCeeEEEEec-----C----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeE
Q 004207 654 DLLCSCDNNSEIRYWSINNGSCAGVFKC-----Q----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLE 724 (768)
Q Consensus 654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-----~----~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~ 724 (768)
. +++|+.||.|++||+..+..++.... . .-|.++.|-.+ +.|++|.+.|+|.+||...+..+..
T Consensus 168 ~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS----- 240 (691)
T KOG2048|consen 168 K-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQS----- 240 (691)
T ss_pred E-EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhh-----
Confidence 4 55999999999999999887773321 1 12566777644 6799999999999999888765443
Q ss_pred EeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 725 LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 725 iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+..|...|.+++.++++++|+++|.|+.|.-|
T Consensus 241 -----------~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 241 -----------HSCHDADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred -----------hhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence 33789999999999999999999999988654
No 130
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.78 E-value=5e-19 Score=176.07 Aligned_cols=215 Identities=21% Similarity=0.265 Sum_probs=188.0
Q ss_pred ecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 551 IPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 551 l~~H~~~I~sl~fSp---dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
-.+|+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+.++.+|.+.|++...+.+..+.++++.|-+-+|||.-
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 358999999999987 78889999999999999999999999999999999999999998899999999999999999
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEe-cCCCeeEEEEecCCCEEEEEEcCCe
Q 004207 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~ 705 (768)
++.. +..+. |+.-|.+++|+.|.+++| +|+.+..++|||+...+ ....+. +.+.|..+.|......|++++.|++
T Consensus 90 tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 90 TGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 8875 66665 888999999999977555 99999999999997643 334444 4677999999888899999999999
Q ss_pred EEEEECCCceEeeecc-----------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207 706 ISILDVETQVCRLKLQ-----------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 762 (768)
Q Consensus 706 I~IwD~~t~~~~~~~~-----------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG 762 (768)
|++||.+++..+..+. .|.+||...-.++....-...|.+...+|+..++++|+.|.
T Consensus 167 VRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred eEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcce
Confidence 9999999998776654 88899988877776666667799999999999999999999
Q ss_pred cEEEeC
Q 004207 763 CVKIWK 768 (768)
Q Consensus 763 ~V~IWD 768 (768)
.++.||
T Consensus 247 ~~~kfD 252 (334)
T KOG0278|consen 247 KVYKFD 252 (334)
T ss_pred EEEEEe
Confidence 999886
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.2e-17 Score=169.17 Aligned_cols=197 Identities=17% Similarity=0.262 Sum_probs=152.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---C
Q 004207 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---N 628 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~---t 628 (768)
+.|.-.|..+-....+++|++++.|.+|.+|+++ |..+..+......-+..+.+|+|++|++++..--|+||.+- .
T Consensus 184 ~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd 262 (420)
T KOG2096|consen 184 RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD 262 (420)
T ss_pred hhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccC
Confidence 3455566677777788899999999999999998 88888887766677889999999999999999999999863 2
Q ss_pred CC----eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------CeeEEEEe-----cCCCeeEEEEec
Q 004207 629 PD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFK-----CQSGATQMRFQP 692 (768)
Q Consensus 629 ~~----~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~~~~-----~~~~i~sl~fsp 692 (768)
+. ..+..+.+|...|..++|+++.. .+++.+.||+++|||+.- .+.+++.. ..+....+..+|
T Consensus 263 G~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP 341 (420)
T KOG2096|consen 263 GTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP 341 (420)
T ss_pred cchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC
Confidence 22 12467899999999999999976 555999999999999752 12223221 133455899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 693 RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 693 ~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
.+. +++.+....|.+|..++++....++ ..|...|++++|+++|++++|++ |..++|+
T Consensus 342 ~g~-~lA~s~gs~l~~~~se~g~~~~~~e---------------~~h~~~Is~is~~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 342 SGD-SLAVSFGSDLKVFASEDGKDYPELE---------------DIHSTTISSISYSSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred CCc-EEEeecCCceEEEEcccCccchhHH---------------HhhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence 866 5556666778999888765433222 36899999999999999999987 4677664
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.77 E-value=3.4e-18 Score=183.33 Aligned_cols=215 Identities=18% Similarity=0.323 Sum_probs=172.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~---~~~~tl~~--h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl 626 (768)
-.|..-|.++.+|...++++||+. |.|+|||+... .++..+.. ....|.++...|||+.|++|++-.+|.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 378888889999999999999975 78999998642 23333332 3457899999999999999999999999999
Q ss_pred CCCCeeEE-EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCC
Q 004207 627 ENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 704 (768)
Q Consensus 627 ~t~~~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg 704 (768)
......+. .+....-..++++.+||.+ +.++|..||.|.|||+.+...++.|.+ ..++.||.++++|..|.+|+-|+
T Consensus 495 AapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 87664332 3333334577899999977 555777799999999999999999986 56799999999999999999999
Q ss_pred eEEEEECCCceEeeecc------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 705 YISILDVETQVCRLKLQ------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 705 ~I~IwD~~t~~~~~~~~------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
+|+.||++++....... .+.+-.........+.-|++.|.++.|.+.|++|++.+.
T Consensus 574 tvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred ceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCc
Confidence 99999999875433221 344444444444566678999999999999999999999
Q ss_pred CCcEEEeC
Q 004207 761 DKCVKIWK 768 (768)
Q Consensus 761 DG~V~IWD 768 (768)
|..+..|.
T Consensus 654 DnlLnawr 661 (705)
T KOG0639|consen 654 DNLLNAWR 661 (705)
T ss_pred hhhhhhcc
Confidence 99998884
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=3.5e-17 Score=167.70 Aligned_cols=231 Identities=17% Similarity=0.246 Sum_probs=154.9
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW 582 (768)
.+....|.++|+|+++++|..... +.+..-.|..+|.+|+|.+ ...+++|+.||.|+++
T Consensus 22 ~~~~~~LLvssWDgslrlYdv~~~--------------------~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 22 SPSSSDLLVSSWDGSLRLYDVPAN--------------------SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRY 80 (323)
T ss_pred cCcCCcEEEEeccCcEEEEeccch--------------------hhhhheecCCceeeeeccC-CceEEEeccCceEEEE
Confidence 334567788889999999955432 1222236889999999985 5578999999999999
Q ss_pred ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 583 dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D 662 (768)
|+.++... .+..|..+|.||.+++....+++|++|++|++||.+... ....+.. ...|.|++... ..|++|..|
T Consensus 81 Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d~-~kkVy~~~v~g---~~LvVg~~~ 154 (323)
T KOG1036|consen 81 DLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFDQ-GKKVYCMDVSG---NRLVVGTSD 154 (323)
T ss_pred EecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccccc-CceEEEEeccC---CEEEEeecC
Confidence 99987665 556799999999999988899999999999999998632 2344442 34799988773 356678889
Q ss_pred CcEEEEECCCCeeEE---EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE------eeec-------------
Q 004207 663 SEIRYWSINNGSCAG---VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKL------------- 720 (768)
Q Consensus 663 g~I~iWDl~sg~~i~---~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~------~~~~------------- 720 (768)
..|.+||+++..... .-...-.+.++++.|++.-+++++-||.|.+=.++.... ..+.
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 999999999643222 111122344455555444444444555444322221100 0000
Q ss_pred -------------------ceeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 721 -------------------QTLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 721 -------------------~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
..|.+||+...+.+ .+..-...|.+++|+.+|..||+++.
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 03444554433332 34455677999999999999999874
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5e-17 Score=185.68 Aligned_cols=219 Identities=19% Similarity=0.251 Sum_probs=171.8
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
....+++|+.+++|.+|...... +-..+...+-++.+++|+.+|+++|.|+.|-.|+|.++
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~-------------------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~ 125 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGE-------------------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL 125 (933)
T ss_pred cccceEEeeccceEEEeeCCCCC-------------------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEec
Confidence 34477889999999999654432 11123334567999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeec--------CCCCeEEEEEeCCCCeEE
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------HSTTVMSLDFHPSKEDLL 656 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~--------h~~~V~slafsp~g~~lL 656 (768)
.+......+++|.++|.+|.|+|.+++||+.+.||.|+|||+.++.. ..++.+ ....+..++|+|++..++
T Consensus 126 ~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 126 DDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred cccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 99999999999999999999999999999999999999999997654 222221 134567789999988777
Q ss_pred EEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCce
Q 004207 657 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT 733 (768)
Q Consensus 657 aSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~ 733 (768)
+.+. |+.|++|+..+++....+.. ...+..+.|+|+|.||++++.||.|.|||+++... +
T Consensus 205 ~~~~-d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~--------------- 267 (933)
T KOG1274|consen 205 VPPV-DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H--------------- 267 (933)
T ss_pred eecc-CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c---------------
Confidence 5554 88999999999888877764 34488999999999999999999999999987211 1
Q ss_pred EEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207 734 LTLSAHDKLVSSLAASTVNGMVASASHDKCV 764 (768)
Q Consensus 734 ~~l~~H~~~I~sla~spdg~~LaSgs~DG~V 764 (768)
.-...|++++|.|+.+-|-.-...|..
T Consensus 268 ----~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 268 ----EFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred ----cccceeEEEecCCCCCeeEEEeecccc
Confidence 122457778888777655444444443
No 135
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=8.4e-18 Score=179.06 Aligned_cols=186 Identities=24% Similarity=0.422 Sum_probs=154.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCe---EEEE------------------eccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 004207 567 GKLLATGGHDKKAVLWCTESFT---VKST------------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRVW 624 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~---~~~t------------------l~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVW 624 (768)
|+|+|+|+.|..|.|||+.--. +..+ -.+|+..|.++.|+.. .+.||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 6799999999999999986311 1111 2368889999999875 5689999999999999
Q ss_pred ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeeEEEEecCCCE-EEEEEc
Q 004207 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGR-ILAAAI 702 (768)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~~-llags~ 702 (768)
|+.++++ ..++..|.+.|.++.|+|....+|++|+.|++|.+.|.|. ...-..++..+.|-.++|.|.... +++++.
T Consensus 272 D~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 9999886 7777889999999999999999999999999999999994 334456667799999999987665 666678
Q ss_pred CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207 703 ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 703 Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD 768 (768)
||+|+-||++... ..+.++.+|.+.|.+|++++.. .+++|++.|+.|++|+
T Consensus 351 dG~v~~~D~R~~~---------------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 351 DGTVYYFDIRNPG---------------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred CceEEeeecCCCC---------------CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 9999999998752 1233566999999999999765 5899999999999996
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=2.9e-17 Score=176.17 Aligned_cols=242 Identities=17% Similarity=0.199 Sum_probs=195.5
Q ss_pred cCCCCCceEEEEecCCCCccccc-----------CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207 476 HNGASSKSLLMFGSDGMGSLTSA-----------PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (768)
Q Consensus 476 ~s~s~~~~~l~~~~~~~~~~~~~-----------~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~ 544 (768)
.+-+.++.+..|..++. .-.++ +........++++|+..+.|++|+....
T Consensus 51 as~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k------------------ 111 (673)
T KOG4378|consen 51 ASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK------------------ 111 (673)
T ss_pred eecCCceeEEEecccCC-CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH------------------
Confidence 34456777777777665 11111 2222334578899999999999954321
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCEEEEEEcCCCC-EEEEEeCCCcEE
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLS-RLATSSADRTVR 622 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h-~~~V~sl~fspdg~-~LaTgs~DgtIr 622 (768)
..++.+++|...|+|+.|+....|||+++..|.|.|..+.++....++... ...|.-+.|+|..+ +|.+++++|+|.
T Consensus 112 -l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 112 -LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred -HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 234567899999999999999999999999999999999988777666544 34566899999755 567889999999
Q ss_pred EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~ 702 (768)
+||+............|..+...|+|+|..+.+|++.+.|+.|.+||++.......+....+...++|.++|.+|++|..
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecC
Confidence 99998776656677889999999999999999999999999999999998888888888899999999999999999999
Q ss_pred CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC
Q 004207 703 ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN 752 (768)
Q Consensus 703 Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg 752 (768)
.|.|..||++..+.. +..+.+|...|++|+|-+.-
T Consensus 271 ~G~~i~YD~R~~k~P---------------v~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAP---------------VAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCC---------------ceEeeecccceeEEEeeecc
Confidence 999999999875432 33556899999999998754
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.1e-18 Score=193.46 Aligned_cols=195 Identities=16% Similarity=0.323 Sum_probs=160.0
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCee
Q 004207 558 VESCHFSP-DGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYS 632 (768)
Q Consensus 558 I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t---~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~ 632 (768)
+..|.|+. +.++|||++..|.|.+||+.. .+.+..+..|+..|.+++|++. ..+|++||.||+|++||++..+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S- 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS- 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence 55677765 677999999999999999986 5566788899999999999984 67899999999999999998665
Q ss_pred EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 710 (768)
Q Consensus 633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD 710 (768)
..++.+....|..|.|+|...+.|+++.+.|.+.+||+|.. .+...+. +.++|.++.|+|++.+|++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 66777788899999999998889999999999999999864 3444343 467899999999999999999999999999
Q ss_pred CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE--CCCcEEEeC
Q 004207 711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS--HDKCVKIWK 768 (768)
Q Consensus 711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs--~DG~V~IWD 768 (768)
+.+.+.... .....-.+|.+|.|-|+.. .|++++ .|-.|+|||
T Consensus 249 ~t~~~~~~~---------------~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 249 MTDSRAKPK---------------HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred ccCCCccce---------------eEEeecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 986432211 1112345789999999875 566666 488999997
No 138
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5e-17 Score=180.78 Aligned_cols=223 Identities=20% Similarity=0.283 Sum_probs=177.2
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~ 585 (768)
.+.|++| .+..|.+|....+. ...+.. -+...|+++.|+++|.+|++|..+|.|.|||..
T Consensus 188 ~n~laVa-lg~~vylW~~~s~~-----------------v~~l~~--~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~ 247 (484)
T KOG0305|consen 188 ANVLAVA-LGQSVYLWSASSGS-----------------VTELCS--FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK 247 (484)
T ss_pred CCeEEEE-ecceEEEEecCCCc-----------------eEEeEe--cCCCceEEEEECCCCCEEEEeecCCeEEEEehh
Confidence 3456665 56788999654442 112222 227789999999999999999999999999999
Q ss_pred CCeEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207 586 SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (768)
Q Consensus 586 t~~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~ 664 (768)
+.+.+.++.+ |...|-+++|. +..+.+|+.|+.|.++|++.......++.+|...|..+.|++++. .+++|+.|+.
T Consensus 248 ~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~ 324 (484)
T KOG0305|consen 248 EQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNV 324 (484)
T ss_pred hccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccc
Confidence 9999999988 99999999999 668999999999999999987765566889999999999999976 7889999999
Q ss_pred EEEEECCCCeeEEEE-ecCCCeeEEEEecCCCEEE-EEE--cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC
Q 004207 665 IRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRIL-AAA--IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD 740 (768)
Q Consensus 665 I~iWDl~sg~~i~~~-~~~~~i~sl~fsp~~~~ll-ags--~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~ 740 (768)
|.|||.........+ .+...|..++|+|-..-|+ +|+ .|++|++||..++..+... ...
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-----------------dtg 387 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-----------------DTG 387 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----------------ccC
Confidence 999999766655544 4567899999999755544 443 5888999988876654332 345
Q ss_pred CCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 004207 741 KLVSSLAASTVNGMVASAS--HDKCVKIWK 768 (768)
Q Consensus 741 ~~I~sla~spdg~~LaSgs--~DG~V~IWD 768 (768)
+-|.+|.|++..+-|+++. .++.|.||+
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~ 417 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWK 417 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence 6799999999887666553 467888885
No 139
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2e-17 Score=171.39 Aligned_cols=245 Identities=15% Similarity=0.230 Sum_probs=184.5
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW 582 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg~I~VW 582 (768)
.+..++++...++|++|+...+ ..+..+++|...+..+.|.. ....+.+|+.||+|++|
T Consensus 39 ~e~~vav~lSngsv~lyd~~tg-------------------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDKGTG-------------------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred cceeEEEEecCCeEEEEeccch-------------------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 4578899999999999944321 23455667888888888877 35579999999999999
Q ss_pred ECCCCeEEEE--eccCC-CCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCCeeE-EEeecCCCCeEEEEEeCCCCe
Q 004207 583 CTESFTVKST--LEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 583 dl~t~~~~~t--l~~h~-~~V~sl~fspdg~~LaTgs~----DgtIrVWDl~t~~~~~-~~~~~h~~~V~slafsp~g~~ 654 (768)
|+++...... +..+. .+..|++....++.+++|.. |-.|.+||++.....+ .....|...|++|.|||....
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC
Confidence 9987655433 34454 45677777767788888754 6689999999877644 445679999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCC----eeEEEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCceEeeecc--------
Q 004207 655 LLCSCDNNSEIRYWSINNG----SCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQ-------- 721 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg----~~i~~~~~~~~i~sl~fsp~~-~~llags~Dg~I~IwD~~t~~~~~~~~-------- 721 (768)
+|++|+.||.|.+||+... .+..++.....|.++.|...+ ..|++.+...+..+|+++.+.+...+.
T Consensus 180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 9999999999999999753 345666667789999998765 458999999999999998876544332
Q ss_pred ------------------------------eeEE---eecCCCce----EEec-cCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207 722 ------------------------------TLEL---WNMTENKT----LTLS-AHDKLVSSLAASTVNGMVASASHDKC 763 (768)
Q Consensus 722 ------------------------------~I~i---wd~~~~~~----~~l~-~H~~~I~sla~spdg~~LaSgs~DG~ 763 (768)
+..+ -+...+.. ..+. +|...|.++.|...+.+++|||+||.
T Consensus 260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 1111 11111111 1233 37778899999988999999999999
Q ss_pred EEEeC
Q 004207 764 VKIWK 768 (768)
Q Consensus 764 V~IWD 768 (768)
|++|+
T Consensus 340 l~~Wk 344 (376)
T KOG1188|consen 340 LQAWK 344 (376)
T ss_pred EEEEe
Confidence 99995
No 140
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6.8e-18 Score=196.98 Aligned_cols=231 Identities=18% Similarity=0.232 Sum_probs=180.7
Q ss_pred CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 004207 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE 585 (768)
Q Consensus 507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~ 585 (768)
.+|+.|..||+|.+|+.... ..+.....+.....|++.|..+.|++... +||+|+.||.|.|||+.
T Consensus 81 GlIaGG~edG~I~ly~p~~~-------------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASI-------------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred ceeeccccCCceEEecchhh-------------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 68999999999999954321 01223344566789999999999999655 99999999999999998
Q ss_pred CCeEEEEec--cCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCC--CCeEEEEEeCCCCeEEEEEe
Q 004207 586 SFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 586 t~~~~~tl~--~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~--~~V~slafsp~g~~lLaSgs 660 (768)
..+.-.++. ...+.|.+|+|+.. ..+|++++.+|++.|||++..+. +..+..|. ..+..|.|||+...-+++++
T Consensus 148 n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~ls~~~~~~~~S~l~WhP~~aTql~~As 226 (1049)
T KOG0307|consen 148 KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIKLSDTPGRMHCSVLAWHPDHATQLLVAS 226 (1049)
T ss_pred CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-ccccccCCCccceeeeeeCCCCceeeeeec
Confidence 755544442 24567999999875 56789999999999999998754 33333333 45788999999877777776
Q ss_pred CC---CcEEEEECCCC-eeEEEEe-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceE
Q 004207 661 NN---SEIRYWSINNG-SCAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL 734 (768)
Q Consensus 661 ~D---g~I~iWDl~sg-~~i~~~~-~~~~i~sl~fsp~~-~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~ 734 (768)
.| -.|.+||+|.- ..++++. |..+|.++.|.+.+ .++++++.|+.|.+|+.++++.+..+.
T Consensus 227 ~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p------------- 293 (1049)
T KOG0307|consen 227 GDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP------------- 293 (1049)
T ss_pred CCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-------------
Confidence 55 36999999863 4566664 46779999999877 678889999999999999977655443
Q ss_pred EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 004207 735 TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 767 (768)
Q Consensus 735 ~l~~H~~~I~sla~spdg~-~LaSgs~DG~V~IW 767 (768)
...+.+..+.|+|... .|++++-||.|-||
T Consensus 294 ---~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 294 ---AQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred ---CCCcceeeeeecCCCcchhhhheeccceeee
Confidence 5567899999999885 88888999999987
No 141
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=180.36 Aligned_cols=237 Identities=15% Similarity=0.194 Sum_probs=190.7
Q ss_pred cCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004207 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (768)
Q Consensus 498 ~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg 577 (768)
....-...++++++.-.+...+.|+......++..+.. ..++.-...++||+.+++|++.+.|...|
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~-------------~~~~~~~~~~~av~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDP-------------KRFKKDDINATAVCVSFCGNFVFIGYSKG 470 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecC-------------ccccccCcceEEEEEeccCceEEEeccCC
Confidence 33444556777777777888888876655433222111 11122446799999999999999999999
Q ss_pred cEEEEECCCCeEEEEe---ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207 578 KAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl---~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~ 654 (768)
+|-+|++.+|-....+ ..|.++|+.++..--++.+++++.+|.+++||..+... +..+. -...+.++..+....
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-~~~l~-l~~~~~~iv~hr~s~- 547 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-KKSLR-LGSSITGIVYHRVSD- 547 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-eeeec-cCCCcceeeeeehhh-
Confidence 9999999999888888 58999999999998889999999999999999987553 44443 345788888887754
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCce
Q 004207 655 LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKT 733 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~ 733 (768)
+++.+..|-.|+++|+.+.+.++.|.+ ...|+.++|+|+|++|++++.|++|++||+.++.++..+
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~------------- 614 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL------------- 614 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-------------
Confidence 666777799999999999999999984 667999999999999999999999999999887765332
Q ss_pred EEeccCCCCeeEEEEeCCCCEEEEEECC-CcEEEe
Q 004207 734 LTLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 767 (768)
Q Consensus 734 ~~l~~H~~~I~sla~spdg~~LaSgs~D-G~V~IW 767 (768)
.-+.+++++.|+|+|.+|||...| .-|++|
T Consensus 615 ----~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 615 ----LVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred ----ecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 245678999999999999999998 679998
No 142
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=7.4e-17 Score=170.29 Aligned_cols=247 Identities=19% Similarity=0.294 Sum_probs=180.5
Q ss_pred EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--
Q 004207 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-- 585 (768)
Q Consensus 508 ~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-- 585 (768)
++++|+.|..|++|......++ +.+........+..|...|++|.|+|+|++||+|+.+|.|.+|-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~----------~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPG----------GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCC----------CCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 8999999999999955433211 1224566778889999999999999999999999999999999654
Q ss_pred ------C--------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207 586 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (768)
Q Consensus 586 ------t--------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~ 651 (768)
+ ......+.+|...|+.++|+|++.++++++.|.++++||+..+.. ...+..|...|..++|.|-
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchh
Confidence 2 334567788999999999999999999999999999999998875 7888999999999999998
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeEEEEe--------------------c----CCCeeEEEEecCCCEEEEEEc----C
Q 004207 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------C----QSGATQMRFQPRLGRILAAAI----E 703 (768)
Q Consensus 652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--------------------~----~~~i~sl~fsp~~~~llags~----D 703 (768)
+. .+++-+.|...+++++.....+.... + ..-...++|+|+|..+++.+. +
T Consensus 177 ~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g 255 (434)
T KOG1009|consen 177 NQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG 255 (434)
T ss_pred hh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence 66 44466667666666654332222111 1 112456889999888877542 2
Q ss_pred C-----eEEEEECCCce-Eeeec------------------------------------------ceeEEeecCCCceEE
Q 004207 704 N-----YISILDVETQV-CRLKL------------------------------------------QTLELWNMTENKTLT 735 (768)
Q Consensus 704 g-----~I~IwD~~t~~-~~~~~------------------------------------------~~I~iwd~~~~~~~~ 735 (768)
+ ..++|+-.... ....+ ..+.+||......+.
T Consensus 256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~ 335 (434)
T KOG1009|consen 256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLA 335 (434)
T ss_pred CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceE
Confidence 2 23444432210 00000 056667766644442
Q ss_pred --eccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 736 --LSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 736 --l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
-.-|-..|+.++|+++|.+|+..|.||...+
T Consensus 336 ~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 336 VVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 2357888999999999999999999997643
No 143
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.74 E-value=1.3e-16 Score=177.32 Aligned_cols=266 Identities=17% Similarity=0.253 Sum_probs=202.5
Q ss_pred cccCCCCCceEEEEecCCCCccc---------------ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccc
Q 004207 474 LQHNGASSKSLLMFGSDGMGSLT---------------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (768)
Q Consensus 474 l~~s~s~~~~~l~~~~~~~~~~~---------------~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~ 538 (768)
..++++.++++++|.++...+.. +-.....++.++|.+-+.-|..++|...
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~-------------- 346 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK-------------- 346 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc--------------
Confidence 45778899999999999763322 2233445666777777777888888411
Q ss_pred cCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEeccCCCCEEEEEEcCCCCEEEE
Q 004207 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLAT 614 (768)
Q Consensus 539 ~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~----t~~~~~tl~~h~~~V~sl~fspdg~~LaT 614 (768)
+...+.....+.+|.+.|.+++|+|.|++|++++.|-+-+||-.- +...+..-.-|...++|++|-+....|++
T Consensus 347 --d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 347 --DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS 424 (764)
T ss_pred --CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeee
Confidence 223345566778999999999999999999999999999998643 12334444568888999999986678889
Q ss_pred EeCCCcEEEEECCC-------------------------------------------CCe--------------------
Q 004207 615 SSADRTVRVWDTEN-------------------------------------------PDY-------------------- 631 (768)
Q Consensus 615 gs~DgtIrVWDl~t-------------------------------------------~~~-------------------- 631 (768)
|...+.+|+|+... +..
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 88889999998640 000
Q ss_pred ------------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-----CcEEEEECCCCeeEEEEecC-CCeeEEEEecC
Q 004207 632 ------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR 693 (768)
Q Consensus 632 ------------~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-----g~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~ 693 (768)
.+..+-||...|++++.+|+++ ++++++.. ..|++|+..+...+..+..| -.|+.++|+|+
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd 583 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD 583 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC
Confidence 0112347889999999999977 77676543 36999999998888776654 46999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 694 LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 694 ~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.+|++++.|.++.+|......... ........|...|.++.|+|++.+|+|+|.|.+|+||.
T Consensus 584 g~~LLsvsRDRt~sl~~~~~~~~~e------------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 584 GRYLLSVSRDRTVSLYEVQEDIKDE------------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred CcEEEEeecCceEEeeeeecccchh------------hhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999875432210 01113568999999999999999999999999999994
No 144
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=7.3e-17 Score=163.67 Aligned_cols=222 Identities=22% Similarity=0.342 Sum_probs=167.3
Q ss_pred ceeeEEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-----ccCCCCEEEEEEcC--CCCEEE
Q 004207 543 FTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRLA 613 (768)
Q Consensus 543 ~~~~~~~~l~-~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~-~~tl-----~~h~~~V~sl~fsp--dg~~La 613 (768)
.++..+..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+ .+|....++-+|+| +++.++
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence 3444555555 5667999999999999998875 88999999987665 3333 23556788899999 577777
Q ss_pred EEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCC-eeEEEEe
Q 004207 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSG-ATQMRFQ 691 (768)
Q Consensus 614 Tgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~~~~-i~sl~fs 691 (768)
+. .|++++.||+++..+...+-.+|...|..++|+|+..++|++|+.||.|+|||.|.- ..+..+..+.. |.++.|+
T Consensus 189 tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 189 TT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred Ee-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence 75 689999999998877667778899999999999999999999999999999999864 45566655443 8899999
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCceEeeecc-------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCC-EEE
Q 004207 692 PRLG-RILAAAIENYISILDVETQVCRLKLQ-------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVA 756 (768)
Q Consensus 692 p~~~-~llags~Dg~I~IwD~~t~~~~~~~~-------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~-~La 756 (768)
|... .|+++++|..|.+|....-.....+. .-+.--+..+.+.++..|.+.|++++|+.-.. .||
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence 9654 47788999999998765432111100 00000123344557889999999999997766 567
Q ss_pred EEECCCcEEE
Q 004207 757 SASHDKCVKI 766 (768)
Q Consensus 757 Sgs~DG~V~I 766 (768)
+-|.||.|.|
T Consensus 348 SLSYDGRviI 357 (370)
T KOG1007|consen 348 SLSYDGRVII 357 (370)
T ss_pred EeccCceEEe
Confidence 8899999876
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.6e-16 Score=160.07 Aligned_cols=204 Identities=19% Similarity=0.298 Sum_probs=153.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEeccCCCCEEEEEEcC-C-CCEEEEEeCCCcEEEEE
Q 004207 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP-S-LSRLATSSADRTVRVWD 625 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~----t~~~~~tl~~h~~~V~sl~fsp-d-g~~LaTgs~DgtIrVWD 625 (768)
.+|.+-|+|+.|.+.|+.+|+|+.|++|+|||.+ +..+....+.|.+.|..|.|.+ . |..+|+|+.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 5788999999999999999999999999999954 3457778899999999999965 3 89999999999999997
Q ss_pred CCC--C------CeeEEEeecCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCC------CeeEEEEe--------cC
Q 004207 626 TEN--P------DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN------GSCAGVFK--------CQ 682 (768)
Q Consensus 626 l~t--~------~~~~~~~~~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~s------g~~i~~~~--------~~ 682 (768)
-.. . -....++....+.|++|.|.|.. ...+++++.||.||||+.-. ....+.+. .+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 1 12245667778899999999963 35688999999999998654 23333333 34
Q ss_pred CCeeEEEEecCC---CEEEEEEcC-----CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC--
Q 004207 683 SGATQMRFQPRL---GRILAAAIE-----NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-- 752 (768)
Q Consensus 683 ~~i~sl~fsp~~---~~llags~D-----g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-- 752 (768)
....|+.|+|.. .+|++|+.+ +.+.||........ | .++.++.+|..+|++|+|.|+-
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK--------w----~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK--------W----LKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce--------e----eeehhcCCCCCcceeeeeccccCC
Confidence 456788888742 335555544 26667665442210 1 1123566999999999999974
Q ss_pred --CEEEEEECCCcEEEeC
Q 004207 753 --GMVASASHDKCVKIWK 768 (768)
Q Consensus 753 --~~LaSgs~DG~V~IWD 768 (768)
.+||+++.|| |+||+
T Consensus 238 ~y~~lAvA~kDg-v~I~~ 254 (361)
T KOG2445|consen 238 SYHLLAVATKDG-VRIFK 254 (361)
T ss_pred ceeeEEEeecCc-EEEEE
Confidence 4899999999 99985
No 146
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.4e-16 Score=167.45 Aligned_cols=202 Identities=20% Similarity=0.317 Sum_probs=155.2
Q ss_pred EEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCCCCEEEEEEcCC-CCEEEEEeCC
Q 004207 548 FQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSAD 618 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~-------~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~D 618 (768)
.-.+.+|+++|..++|+| +...||+|+.|.+|.||.+... +.+..+.+|...|--|.|+|. .+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 345679999999999999 5668999999999999988653 456788999999999999996 5789999999
Q ss_pred CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC--eeEEEEecCCCE
Q 004207 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGR 696 (768)
Q Consensus 619 gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~--i~sl~fsp~~~~ 696 (768)
.+|.|||+.+++. +..+. |...|++++|+.+|. +||+.+.|+.|+|||.++++.+..-..+.+ ...+.|-.++.
T Consensus 154 n~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 9999999999886 44455 999999999999987 777888999999999999999988754333 55677888877
Q ss_pred EEEEE----cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEe
Q 004207 697 ILAAA----IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIW 767 (768)
Q Consensus 697 llags----~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IW 767 (768)
+++.+ ++..|.+||.........+ .+ + ...+.|.---|.++.++|+.+| .|+.|+-|
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~-----~e--------l-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIAL-----QE--------L-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred eeeeccccccccceeccCcccccCccee-----EE--------e-ccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 55544 4667888887664332111 11 1 2233444455677777665555 47777765
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.72 E-value=1.7e-16 Score=170.45 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=159.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~ 637 (768)
-+|++......|+++|+..++|+|||++...+.+.+++|...|++|.++....|||+++..|.|.|..+.++.. ...|.
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~ 160 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFT 160 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-cccee
Confidence 44555555558999999999999999998778889999999999999999999999999999999999988664 33444
Q ss_pred cC-CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCC
Q 004207 638 GH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGR-ILAAAIENYISILDVET 713 (768)
Q Consensus 638 ~h-~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t 713 (768)
.. ...|.-+.|++..+.+|.+++.+|.|.+||+.....+..+. +..+...+||+|.... |++.+.|..|.+||.+.
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 33 34566899999999999999999999999999877776654 3567788999997665 66788999999999986
Q ss_pred ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.....++ ....+..+|+|.++|.+|+.|...|.|..||
T Consensus 241 ~~s~~~l-----------------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 241 QASTDRL-----------------TYSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred cccccee-----------------eecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 5443221 2334678999999999999999999999987
No 148
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.2e-16 Score=168.01 Aligned_cols=200 Identities=20% Similarity=0.310 Sum_probs=160.5
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
..+..+.+.||+.|...+++.+|....+. .+..+.+|=..|+|+.|+-||.+|+||+.||.
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~-------------------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGI-------------------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEecccc-------------------HHHHHHhhccceeEEEEeCCCcEEEecCCCcc
Confidence 44456778899988899999999654442 24455789999999999999999999999999
Q ss_pred EEEEECC---------CCeEEEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207 579 AVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (768)
Q Consensus 579 I~VWdl~---------t~~~~~tl~~h~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla 647 (768)
|.+|.+. +-++++.+..|+-+|+++...+. ..+|+|+|.|.+|++||+..+.. +.++. ....+.+++
T Consensus 147 V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-Llti~-fp~si~av~ 224 (476)
T KOG0646|consen 147 VLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-LLTIT-FPSSIKAVA 224 (476)
T ss_pred EEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-eEEEe-cCCcceeEE
Confidence 9999753 24567888999999999988764 46899999999999999998875 33333 356899999
Q ss_pred EeCCCCeEEEEEeCCCcEEEEECCCCe----------------eEEEEec-C--CCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 648 FHPSKEDLLCSCDNNSEIRYWSINNGS----------------CAGVFKC-Q--SGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 648 fsp~g~~lLaSgs~Dg~I~iWDl~sg~----------------~i~~~~~-~--~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
.+|-+. .+++|+.+|.|.+.++.... .+..+.+ . ..|+|++++-++..|++|+.||.|+|
T Consensus 225 lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 225 LDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV 303 (476)
T ss_pred Eccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence 999866 55689999999998875322 2333333 2 36999999999999999999999999
Q ss_pred EECCCceEeeec
Q 004207 709 LDVETQVCRLKL 720 (768)
Q Consensus 709 wD~~t~~~~~~~ 720 (768)
||+.+..++..+
T Consensus 304 Wdi~S~Q~iRtl 315 (476)
T KOG0646|consen 304 WDIYSKQCIRTL 315 (476)
T ss_pred EecchHHHHHHH
Confidence 999887765443
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=1.9e-16 Score=163.26 Aligned_cols=229 Identities=17% Similarity=0.255 Sum_probs=169.9
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCT 584 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl 584 (768)
+.++|.|+.-|.|++.+.... .....+.+|...|..|.|+|+. ++|++++.|..|++|++
T Consensus 105 ~p~la~~G~~GvIrVid~~~~-------------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG-------------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CeeEEeecceeEEEEEecchh-------------------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 456666666666666643222 3456778999999999999965 68999999999999999
Q ss_pred CCCeEEEEe---ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe------------------------e---EE
Q 004207 585 ESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------------------S---LR 634 (768)
Q Consensus 585 ~t~~~~~tl---~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~------------------------~---~~ 634 (768)
.+..++..+ .+|.+.|.+|.|++++.+|++++.|..|++|++...+. . ..
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 999999887 67999999999999999999999999999999983221 0 01
Q ss_pred EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEEC-CCCe-------------eEEEEec-CCCee--EEEEecCCCEE
Q 004207 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGS-------------CAGVFKC-QSGAT--QMRFQPRLGRI 697 (768)
Q Consensus 635 ~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl-~sg~-------------~i~~~~~-~~~i~--sl~fsp~~~~l 697 (768)
+-.-|...|-|+.|.- .++++-+.++.|.+|.. .-++ .+..+.. ...+. ..+|+|....|
T Consensus 246 t~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred ccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 2234777888888873 36668777889999976 2111 1222222 12233 35567877889
Q ss_pred EEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 698 LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 698 lags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.|...|.|++||++...... ...++.......|...+|+.|+.+|+..++|++|.-||
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~------------~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPK------------CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCCCCCcc------------CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 999999999999998754421 11222223345789999999999999999999999886
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.70 E-value=3.5e-15 Score=158.39 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=142.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE
Q 004207 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s 645 (768)
+.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++. +..+..+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence 3578899999999999999999888887654 46789999999876 5667889999999998765 44444443 3578
Q ss_pred EEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCceEeeecceeE
Q 004207 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQTLE 724 (768)
Q Consensus 646 lafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg-~I~IwD~~t~~~~~~~~~I~ 724 (768)
++|+|+++.+++++..++.|++||+++.+.+..+.....+..++|+|++..++++..++ .+.+||..+......
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~----- 152 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN----- 152 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE-----
Confidence 89999998787777788999999999988888887666678899999999988887764 466778776543211
Q ss_pred EeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207 725 LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 768 (768)
Q Consensus 725 iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD 768 (768)
+ .....+.+++|++++.+|++++ .|+.|++||
T Consensus 153 -----------~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 153 -----------V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred -----------E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 0 1223457899999999886554 699999996
No 151
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.69 E-value=7.8e-16 Score=170.88 Aligned_cols=232 Identities=13% Similarity=0.188 Sum_probs=165.0
Q ss_pred ccccCCCceeeEEEEecCCCCCeEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCCeEEEE------------
Q 004207 536 SAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATGGHDKKAVLWCTESFTVKST------------ 592 (768)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-----------g~~LaSgs~Dg~I~VWdl~t~~~~~t------------ 592 (768)
+|++.+.........+--|...|+.+.--|. ...|+||+.|++|++||+..+..-.+
T Consensus 350 vWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k 429 (1080)
T KOG1408|consen 350 VWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK 429 (1080)
T ss_pred EEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhc
Confidence 4555554444445555567777777665541 23589999999999999875211000
Q ss_pred -------------------------eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207 593 -------------------------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (768)
Q Consensus 593 -------------------------l~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla 647 (768)
.......|.+|+.+|++.+||+|..-|+|||||+..-+. .....+|...|.|+.
T Consensus 430 i~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-~~~~eAHesEilcLe 508 (1080)
T KOG1408|consen 430 IPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-TCFMEAHESEILCLE 508 (1080)
T ss_pred CccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-hhheecccceeEEEe
Confidence 001334689999999999999999999999999987665 667788999999999
Q ss_pred EeCC--CCeEEEEEeCCCcEEEEECCC-CeeEEEEec-CCCeeEEEEecCC--CEEEEEEcCCeEEE-------------
Q 004207 648 FHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISI------------- 708 (768)
Q Consensus 648 fsp~--g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~-~~~i~sl~fsp~~--~~llags~Dg~I~I------------- 708 (768)
|+-- +..+|++++.|..|.|||+.. ..++.++.. ...|+++.|.-.+ ..+++++.|..|.+
T Consensus 509 yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~ 588 (1080)
T KOG1408|consen 509 YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP 588 (1080)
T ss_pred ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence 9742 456899999999999999853 445555554 4568888887665 45677776655432
Q ss_pred -----------EECCCc---e---EeeecceeEEeecCCCceEE-e---ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 709 -----------LDVETQ---V---CRLKLQTLELWNMTENKTLT-L---SAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 709 -----------wD~~t~---~---~~~~~~~I~iwd~~~~~~~~-l---~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
||+.-. + .....+.|+||++..++... | .+|++....|...|.|.||++.+.|.++.|+
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~ 668 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFV 668 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEE
Confidence 222110 0 01112278888888777653 2 2677888899999999999999999999998
Q ss_pred C
Q 004207 768 K 768 (768)
Q Consensus 768 D 768 (768)
|
T Consensus 669 D 669 (1080)
T KOG1408|consen 669 D 669 (1080)
T ss_pred E
Confidence 7
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.69 E-value=3.9e-16 Score=166.88 Aligned_cols=213 Identities=19% Similarity=0.274 Sum_probs=163.6
Q ss_pred ceeeEEEEecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcCC-CCEEEEE
Q 004207 543 FTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615 (768)
Q Consensus 543 ~~~~~~~~l~~H~~~I~sl~fSpdg--~~LaSgs~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fspd-g~~LaTg 615 (768)
..+.....++-|.++|+|++|+|.. +++|+|..-|.|-+||+.+ ..-+..+..|..+|.++.|+|. ...+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3445556677899999999999954 5788999999999999953 2234566789999999999994 5689999
Q ss_pred eCCCcEEEEECCCCCee-EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee-EEEEe-cCCCeeEEEEec
Q 004207 616 SADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQP 692 (768)
Q Consensus 616 s~DgtIrVWDl~t~~~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~~-~~~~i~sl~fsp 692 (768)
|+||+|++-|++..... +.........+.++.|+.+...++ .++.=|...+||++++.. ...+. +...|..|+++|
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 99999999999875421 222222345677788888766555 555566999999998654 33332 345799999999
Q ss_pred CCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 693 RLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 693 ~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...+ +++++.|++++|||++....... ..+....|...|.+.+|||.+..|+|.+.|..|+|||
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~s------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKAS------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCC------------cceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 8765 77788999999999987433211 1344558999999999999999999999999999997
No 153
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.1e-16 Score=171.82 Aligned_cols=207 Identities=22% Similarity=0.322 Sum_probs=154.9
Q ss_pred ceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC--EEEEEeCC--
Q 004207 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSAD-- 618 (768)
Q Consensus 543 ~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~--~LaTgs~D-- 618 (768)
+...+-..+++|++.|.||+..|.|.+|++|+.||+|+||.+.++.|+.++.. .+.|.||+|+|.+. .||++-.+
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCce
Confidence 44456677899999999999999999999999999999999999999988753 45788888888643 33333221
Q ss_pred ------------------------------CcEEEEECCC--------------------------CCe-----------
Q 004207 619 ------------------------------RTVRVWDTEN--------------------------PDY----------- 631 (768)
Q Consensus 619 ------------------------------gtIrVWDl~t--------------------------~~~----------- 631 (768)
+.|..|.-.. |.+
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 1222332210 000
Q ss_pred --e---------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEE
Q 004207 632 --S---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 699 (768)
Q Consensus 632 --~---------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~lla 699 (768)
. ...|....+.|.++.|||....+|++ + -..|+|||+.....++.+.. ..-|..++++|.|..|++
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-T-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-T-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-e-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 0 01111234678999999998866644 3 46899999988777766554 344788999999999999
Q ss_pred EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
++.|+.+..||+.-. +....++.-|...|++|+|++.-.+|++|+.||+|.||
T Consensus 625 gs~d~k~~WfDldls---------------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLS---------------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred ecCCCeeEEEEcccC---------------cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 999999999998643 22233556799999999999999999999999999987
No 154
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=2.5e-14 Score=154.54 Aligned_cols=238 Identities=26% Similarity=0.403 Sum_probs=185.0
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC-CCeEEEEE-cCCCC-EEEEE
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATG 573 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~I~sl~f-Spdg~-~LaSg 573 (768)
+....+......+..++.|+.+.+|...... ..+..+..+. ..+..+.+ ++++. +++..
T Consensus 68 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (466)
T COG2319 68 ITSIAFSPDGELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129 (466)
T ss_pred EEEEEECCCCcEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEecc
Confidence 3444556677888888899999999654332 1233333422 36777777 78887 55554
Q ss_pred eC-CCcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeC
Q 004207 574 GH-DKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650 (768)
Q Consensus 574 s~-Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp 650 (768)
+. |+.+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|++..+.. +..+.+|...|.+++|+|
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~ 208 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP-LSTLAGHTDPVSSLAFSP 208 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce-EEeeccCCCceEEEEEcC
Confidence 44 99999999998 7888889999999999999999998888885 99999999997443 777788999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeEE-EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecC
Q 004207 651 SKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMT 729 (768)
Q Consensus 651 ~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~ 729 (768)
++..++++++.|+.|++||...+..+. .+..+.......|++++..+++++.|+.+++||.......
T Consensus 209 ~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------------ 276 (466)
T COG2319 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL------------ 276 (466)
T ss_pred CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcE------------
Confidence 887566666899999999999777777 4554443322279999888888999999999999875430
Q ss_pred CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 730 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...+..|...|.++.|+|++..+++++.|+.+++||
T Consensus 277 ---~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~ 312 (466)
T COG2319 277 ---LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312 (466)
T ss_pred ---EEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 111146788999999999888888899998899995
No 155
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.7e-15 Score=162.08 Aligned_cols=199 Identities=17% Similarity=0.236 Sum_probs=163.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD 630 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t--~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~ 630 (768)
..+.|+||.|+|...+|++|+.|++++||.++. ...+..+..-..+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 356799999999999999999999999997753 445666666678999999999998 89999999999999998866
Q ss_pred ee-EEEeecCC-CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 631 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 631 ~~-~~~~~~h~-~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
.. +....++. ..+.....++++. +|+..+..|.|.+....+++.+..++..+.|..++|+.++..|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 42 22233333 3466778889987 555777799999999999999999999999999999999999999999999999
Q ss_pred EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
||++...|.+++. -.. . -.-+++|.+.++.|||+||..|.|.|||
T Consensus 371 ~nl~~~~~~~rf~------D~G-~--------v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 371 WNLRQNSCLHRFV------DDG-S--------VHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred EecCCcceEEEEe------ecC-c--------cceeeeeecCCCceEEeccCcceEEEec
Confidence 9999987654332 111 1 1236778889999999999999999997
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=8.9e-17 Score=187.78 Aligned_cols=198 Identities=18% Similarity=0.320 Sum_probs=157.0
Q ss_pred CCeEEEEEcCCCCE----EEEEeCCCcEEEEECCCC------eEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 004207 556 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVW 624 (768)
Q Consensus 556 ~~I~sl~fSpdg~~----LaSgs~Dg~I~VWdl~t~------~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVW 624 (768)
.+.+.++|.+.|.. ||.|..||.|.+||.... ..+.+...|++.|..+.|++. ++.||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45778999886654 899999999999997652 345667789999999999997 5599999999999999
Q ss_pred ECCCCCeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC---eeEEEEecCCCE-EEE
Q 004207 625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGR-ILA 699 (768)
Q Consensus 625 Dl~t~~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~---i~sl~fsp~~~~-lla 699 (768)
|+.+.+..... .....+.|.+|+|+..-.++|++++.+|.+.|||+|..+.+-.+..... +..+.|+|+... +++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99876543322 1224578999999988889999999999999999998877766654333 778999998765 666
Q ss_pred EEcCC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207 700 AAIEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 700 gs~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD 768 (768)
++.|. .|.+||++.... ...++.+|...|.+|.|++.+ .+|+|++.|+.|.+|+
T Consensus 225 As~dd~~PviqlWDlR~ass---------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN 282 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASS---------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWN 282 (1049)
T ss_pred ecCCCCCceeEeecccccCC---------------chhhhcccccceeeeccCCCCchhhhcccCCCCeeEec
Confidence 66554 477777665322 223456899999999999987 8999999999999997
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=4.6e-16 Score=173.11 Aligned_cols=219 Identities=18% Similarity=0.292 Sum_probs=170.0
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg-----~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg 619 (768)
|.+++.+.+|...|+|++.+|+++++|+++... .|++|+..+...+..+.+|.-.|+.++|+||+++|+++|.|.
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 456778889999999999999999999997643 589999999988889999999999999999999999999999
Q ss_pred cEEEEECCCCC---eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC--eeEE---EEecCCCeeEEEEe
Q 004207 620 TVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAG---VFKCQSGATQMRFQ 691 (768)
Q Consensus 620 tIrVWDl~t~~---~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg--~~i~---~~~~~~~i~sl~fs 691 (768)
++.+|...... ......+.|..-|.+++|+|++. .|+|++.|++|++|..... +.+. .++....|+.++|.
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 99999875432 22344778999999999999976 4889999999999998876 4443 34456788888887
Q ss_pred cCC-----CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC----------CEEE
Q 004207 692 PRL-----GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN----------GMVA 756 (768)
Q Consensus 692 p~~-----~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg----------~~La 756 (768)
|-. ..+++|-..|.|.+|........ .++-.|.+... .....+|.+.|+.+.|.|.. ..|+
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~---~~~~~~~~~~~-l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la 749 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQ---VTVGTFNLDTR-LCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLA 749 (764)
T ss_pred ccccccccceEEEEecccEEEEEeccccccc---ccceeeeeccc-cccccChHHhhheeEeccccccccccccceeEEe
Confidence 632 24566778899999986532211 11222222211 12344788899999999752 3679
Q ss_pred EEECCCcEEEeC
Q 004207 757 SASHDKCVKIWK 768 (768)
Q Consensus 757 Sgs~DG~V~IWD 768 (768)
+|++|.+++|++
T Consensus 750 ~~g~D~~vri~n 761 (764)
T KOG1063|consen 750 VGGDDESVRIFN 761 (764)
T ss_pred eecccceeEEee
Confidence 999999999985
No 158
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.68 E-value=1.6e-14 Score=155.92 Aligned_cols=189 Identities=21% Similarity=0.338 Sum_probs=156.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-----
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----- 630 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~----- 630 (768)
.-|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|+.|..|..||-+-.+
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEecccccccccccc
Confidence 5699999999887 6799999999999998888888777999999999999998655 59999999999842100
Q ss_pred -----------------ee-----------------EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE
Q 004207 631 -----------------YS-----------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (768)
Q Consensus 631 -----------------~~-----------------~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i 676 (768)
.. .....+|......++.+|+.+ .+++|+.|+.+++|+ ..+.+
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--CCcee
Confidence 00 012346888899999999965 667999999999999 56777
Q ss_pred EEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEE
Q 004207 677 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 756 (768)
Q Consensus 677 ~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~La 756 (768)
.+.....++.++.|+|.+ .+++|+..|...++|.++...+ ++......+++++|+|+|.+||
T Consensus 402 wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv-----------------~~~~d~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 402 WTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV-----------------TIHTDNEQLSVVRYSPDGAFLA 463 (626)
T ss_pred EEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeE-----------------EEEecCCceEEEEEcCCCCEEE
Confidence 777778999999999998 8999999999999998884432 2222367899999999999999
Q ss_pred EEECCCcEEEe
Q 004207 757 SASHDKCVKIW 767 (768)
Q Consensus 757 Sgs~DG~V~IW 767 (768)
.|+.|+.|+||
T Consensus 464 vgs~d~~iyiy 474 (626)
T KOG2106|consen 464 VGSHDNHIYIY 474 (626)
T ss_pred EecCCCeEEEE
Confidence 99999999998
No 159
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.67 E-value=8.2e-15 Score=158.08 Aligned_cols=220 Identities=20% Similarity=0.236 Sum_probs=169.4
Q ss_pred EEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004207 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (768)
Q Consensus 509 latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~ 588 (768)
+.+|..+|+|.+|.. .+.. ..+...+|.+.|.|++.-.+|.+|- |+.|..|..||-.-.+
T Consensus 260 viTgDS~G~i~Iw~~-----------------~~~~--~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k 319 (626)
T KOG2106|consen 260 VITGDSGGNILIWSK-----------------GTNR--ISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRK 319 (626)
T ss_pred EEeecCCceEEEEeC-----------------CCce--EEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccc
Confidence 467888999999932 1111 2233339999999999999997655 9999999999832100
Q ss_pred -----------E-----------------------------EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 589 -----------V-----------------------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 589 -----------~-----------------------------~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
. ..+..+|....+.++.+|+...|+|++.|+.+++|+-
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~-- 397 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND-- 397 (626)
T ss_pred cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC--
Confidence 0 0112358888899999999999999999999999992
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
.+. +- ..--..++.|++|+|.| .++.|...|...+.|.++...+........+++++|+|+|.+|++++.|+.|+|
T Consensus 398 ~k~-~w-t~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 398 HKL-EW-TKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred Cce-eE-EEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 222 22 22234689999999998 677899999999999999777776666888999999999999999999999999
Q ss_pred EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|.+......... .-..|..+|+.+.|++|+.+|.+-+-|-.|..|+
T Consensus 474 y~Vs~~g~~y~r--------------~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 474 YRVSANGRKYSR--------------VGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEECCCCcEEEE--------------eeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 988664332110 0012337899999999999999999999999984
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=3.1e-15 Score=164.28 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=145.7
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
++.+++++|.|..|++|..+.+...+- . .....+.+..-.|.|+.|+|...-|+..+..|+++|||+
T Consensus 91 ~D~LLAT~S~D~~VKiW~lp~g~~q~L------------S-ape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~ 157 (1012)
T KOG1445|consen 91 ADELLATCSRDEPVKIWKLPRGHSQKL------------S-APEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDI 157 (1012)
T ss_pred chhhhhcccCCCeeEEEecCCCccccc------------C-CcceeecCCceEEEEeecccCcCceEEeccCceEEEEEc
Confidence 578899999999999997663321100 0 011223344457899999996654555556789999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCC-eEEEEEeCCCCeEEEEEeC--
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDLLCSCDN-- 661 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~-V~slafsp~g~~lLaSgs~-- 661 (768)
.+.+.+..+.+|.+.|.+..|+.||.+|++++.|+.|+|||.+.....+....+|.+. =..+.|.-+-.+++.+|-.
T Consensus 158 stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~ 237 (1012)
T KOG1445|consen 158 STQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTK 237 (1012)
T ss_pred ccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchh
Confidence 9999999999999999999999999999999999999999999877778888888653 3446777665667755543
Q ss_pred -CCcEEEEECCC-CeeEEEEe--cCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCC
Q 004207 662 -NSEIRYWSINN-GSCAGVFK--CQSGATQMRFQPRLGRILAA-AIENYISILDVET 713 (768)
Q Consensus 662 -Dg~I~iWDl~s-g~~i~~~~--~~~~i~sl~fsp~~~~llag-s~Dg~I~IwD~~t 713 (768)
-..|++||.+. +..++++. ...++.--.|.|+.+.++.+ -.++.|..+.+..
T Consensus 238 R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 238 RIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred hheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence 35789999987 34555554 35566666789998875544 4677888877654
No 161
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=4.1e-15 Score=151.22 Aligned_cols=200 Identities=21% Similarity=0.306 Sum_probs=154.2
Q ss_pred cCCCCCeEEEEEcCCCC-----EEEEEeCCCcEEEEECCC--CeEE--EEe-----ccCCCCEEEEEEcC-CCCEEEEEe
Q 004207 552 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTES--FTVK--STL-----EEHTQWITDVRFSP-SLSRLATSS 616 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~-----~LaSgs~Dg~I~VWdl~t--~~~~--~tl-----~~h~~~V~sl~fsp-dg~~LaTgs 616 (768)
..|.-+++.+.|.|+.. +|||++ -.+++|.+.. .+.. ..+ ..+..++++..|+. +.++|.|+|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 37889999999999763 566654 3799998863 2211 111 23567899999987 678999999
Q ss_pred CCCcEEEEECCCCC--eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE---ec-CCCeeEEEE
Q 004207 617 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KC-QSGATQMRF 690 (768)
Q Consensus 617 ~DgtIrVWDl~t~~--~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~---~~-~~~i~sl~f 690 (768)
-|-|+.|||++++. .....+.+|...|..|+|...+..+|++++.||.||+||+|.-+-...+ .. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999862 2456778899999999999988999999999999999999975433222 22 456778899
Q ss_pred ecCCCE-EEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEe
Q 004207 691 QPRLGR-ILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIW 767 (768)
Q Consensus 691 sp~~~~-llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IW 767 (768)
++.... +++-. ....|.|.|++... ..+..+..|.+.|+.++|.|.. ..|+|+|+|..+.||
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~---------------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPC---------------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCC---------------cceehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence 886655 44433 34568888887532 2344677999999999999976 689999999999999
Q ss_pred C
Q 004207 768 K 768 (768)
Q Consensus 768 D 768 (768)
|
T Consensus 316 D 316 (364)
T KOG0290|consen 316 D 316 (364)
T ss_pred e
Confidence 7
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=6.2e-15 Score=155.17 Aligned_cols=196 Identities=18% Similarity=0.271 Sum_probs=158.0
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWC 583 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWd 583 (768)
++..||+||.|.+|.+|..++....++.. .++..+.+|...|--+.|+|. .+.|++++.|.+|.+||
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWn 160 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWN 160 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEe
Confidence 57789999999999999888775333221 467888999999999999995 45789999999999999
Q ss_pred CCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC-CeEEEEEeCCCCeEEEEEe--
Q 004207 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCD-- 660 (768)
Q Consensus 584 l~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~-~V~slafsp~g~~lLaSgs-- 660 (768)
+.+++.+.++. |.+-|+++.|+.||.+|+|.+.|+.|||||.++++. +..-.+|.+ .-..+.|..++. ++.||-
T Consensus 161 v~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g~-i~tTGfsr 237 (472)
T KOG0303|consen 161 VGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASGK-IFTTGFSR 237 (472)
T ss_pred ccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccCc-eeeecccc
Confidence 99999998987 999999999999999999999999999999999886 544466754 344566777776 665553
Q ss_pred -CCCcEEEEECCCCe---eEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCce
Q 004207 661 -NNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQV 715 (768)
Q Consensus 661 -~Dg~I~iWDl~sg~---~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~ 715 (768)
.+..+-+||-.+-+ ....+....+|.---|.++...++.++ .|+.|+.|.+....
T Consensus 238 ~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 238 MSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 46789999876533 344555667777777899888766555 79999999987764
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.65 E-value=1.3e-14 Score=149.47 Aligned_cols=242 Identities=17% Similarity=0.238 Sum_probs=173.5
Q ss_pred CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEec-CCCCCeEEEEEc-------CCCCEEEEEeC
Q 004207 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFS-------PDGKLLATGGH 575 (768)
Q Consensus 504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~I~sl~fS-------pdg~~LaSgs~ 575 (768)
+.+..|.+-+.|..+++|..+.+...+..-.. ..+.....++ .....|+..+|- |+..++++.+.
T Consensus 59 PDGSciL~~sedn~l~~~nlP~dlys~~~~~~-------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 59 PDGSCILSLSEDNCLNCWNLPFDLYSKKADGP-------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred CCCceEEeecccCeeeEEecChhhcccCCCCc-------cccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 35567888889999999977655332221111 1111111111 123457888885 57789999999
Q ss_pred CCcEEEEECCCCeEEEEecc--CCC---CEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCCe-eEEEe-----ecCCCCe
Q 004207 576 DKKAVLWCTESFTVKSTLEE--HTQ---WITDVRFSPSLSRLATSSADRTVRVWDT-ENPDY-SLRTF-----TGHSTTV 643 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~--h~~---~V~sl~fspdg~~LaTgs~DgtIrVWDl-~t~~~-~~~~~-----~~h~~~V 643 (768)
|.-|++||.-+++....+.. |.. ...+++|+|||..|++| ...+|+|||+ +.+.. .+... .+..+.|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998877643 332 34689999999999876 7789999999 44432 12222 2336789
Q ss_pred EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCceEeeecc
Q 004207 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQ 721 (768)
Q Consensus 644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~~~ 721 (768)
.|++|+|....++++|+....+-||.-....++..+.. .++|+.++|.++|+.|++|+. |..|..||++.....
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p---- 286 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP---- 286 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch----
Confidence 99999999888999999888998988877777776654 678999999999999999985 788999999874321
Q ss_pred eeEEeecCCCceEEeccCCC---CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 TLELWNMTENKTLTLSAHDK---LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ~I~iwd~~~~~~~~l~~H~~---~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+..+..|.+ --.-+...|++.+|++|+.||.|++||
T Consensus 287 -----------v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 287 -----------VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred -----------hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 112233433 112244568899999999999999997
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.64 E-value=2.3e-15 Score=166.31 Aligned_cols=201 Identities=19% Similarity=0.300 Sum_probs=149.7
Q ss_pred EEEEcC---CCCEEEEEeCCCcEEEEECCCCeEE------EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207 560 SCHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (768)
Q Consensus 560 sl~fSp---dg~~LaSgs~Dg~I~VWdl~t~~~~------~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~ 630 (768)
++.|++ ....|+.+..||.|.++|.+..... ..+..|...|.++.|.|....|++++.|.++++||++..+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 366766 2347999999999999998754332 4566899999999999977789999999999999999876
Q ss_pred ee-EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--------------------eE-------EEEe-c
Q 004207 631 YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--------------------CA-------GVFK-C 681 (768)
Q Consensus 631 ~~-~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--------------------~i-------~~~~-~ 681 (768)
.. ...+.+|.+.|.+++|++....+||+|+.||.|.|||++... .. +..+ .
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 42 235889999999999999999999999999999999997322 00 0000 0
Q ss_pred CCCeeE---EEEecCCCEEEEEEc-CCeEEEEECCCceEeeecceeEEeecCCCceEEeccC---CCCeeEEEEeCCCCE
Q 004207 682 QSGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAH---DKLVSSLAASTVNGM 754 (768)
Q Consensus 682 ~~~i~s---l~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H---~~~I~sla~spdg~~ 754 (768)
...|.+ +.+..|...|++++. |+.|+|||++...+......+.+ ..+..| .-.+.++.....|.+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~--------~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS--------DKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc--------cCccCcccceeeeEEEEecCCCCe
Confidence 112333 445555677887776 99999999999776554432221 111222 335788888888899
Q ss_pred EEEEECCCcEEEeC
Q 004207 755 VASASHDKCVKIWK 768 (768)
Q Consensus 755 LaSgs~DG~V~IWD 768 (768)
|++.+.|+.|++||
T Consensus 286 L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 286 LFASCTDNSIYFYN 299 (720)
T ss_pred EEEEecCCcEEEEe
Confidence 98888899999996
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.64 E-value=1.9e-13 Score=147.66 Aligned_cols=206 Identities=31% Similarity=0.497 Sum_probs=163.0
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 623 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrV 623 (768)
.....+..|...|.+++|+|++.++++++. |+.+++|++..++.+..+.+|...|.+++|+|++. ++++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 456777899999999999999999888885 99999999999889999999999999999999987 5556599999999
Q ss_pred EECCCCCeeEE-EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee-EEEE-ecCCCeeEEEEecCCCEEEEE
Q 004207 624 WDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 624 WDl~t~~~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~-~~~~~i~sl~fsp~~~~llag 700 (768)
||...+.. +. .+.+|...+ ...|++++ .++++++.|+.+++||++.... +..+ .+...+.++.|.|++..++++
T Consensus 226 wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 226 WDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 99886554 44 678887775 44899998 4666899999999999987654 4444 335678999999988888888
Q ss_pred EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 004207 701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 768 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg-s~DG~V~IWD 768 (768)
+.|+.+.+||..+........ ...|...|..+.|.+++..++.+ ..|+.+.+|+
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLT--------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred eCCCcEEEEEcCCCceEEEee--------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888889999887765432111 23677778999984332455555 6788888885
No 166
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.1e-14 Score=156.94 Aligned_cols=207 Identities=17% Similarity=0.246 Sum_probs=162.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEeccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-~~~tl~~h-~~~V~sl~fspdg~~LaTgs~DgtIrVWDl 626 (768)
+.+.--..+|+|++|+.+.+.||.+-.||.|-||++...- +..++.++ ...|.+++|++ +..|++.+.+|.|.-||+
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEec
Confidence 3334445679999999999999999999999999998743 33455555 45799999994 567889999999999999
Q ss_pred CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcC
Q 004207 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~D 703 (768)
.+.+. +..+....+.|++++.+|.+. .++.|++||.+.++++..+++...... .+.+.++.|+|++..+++|+.|
T Consensus 98 ~~lk~-~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 98 HTLKQ-KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred ccCce-eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 98876 666777789999999999976 566777899888999988887765443 4779999999999999999999
Q ss_pred CeEEEEECCCceEeeecceeEEeecCCCceEEecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 704 NYISILDVETQVCRLKLQTLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 704 g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~-H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|.|++||..++...+ +-++. ...+.. ....|++|.|-. ...|++|..-|+|++||
T Consensus 176 g~Iriwd~~~~~t~~------~~~~~---~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLH------IITMQ---LDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWD 231 (691)
T ss_pred ceEEEEEcCCCceEE------Eeeec---ccccccCCceEEEEEEEee-cCcEEEecCCceEEEEc
Confidence 999999998876544 11111 111111 234578888874 45799999999999998
No 167
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.63 E-value=2.7e-14 Score=156.93 Aligned_cols=157 Identities=20% Similarity=0.351 Sum_probs=129.0
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 004207 556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDT 626 (768)
Q Consensus 556 ~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~-------~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl 626 (768)
..|+.++|.| |...||+++.||.|++|.+..+ +....+..|...|++++|+|- ...|+++++|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4599999999 8889999999999999998753 345678889999999999994 678999999999999999
Q ss_pred CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec--CCCeeEEEEecCCCEEEEEEcC
Q 004207 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC--QSGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~--~~~i~sl~fsp~~~~llags~D 703 (768)
.+.+. ...+.+|.+.|.+++|+|+|. .+++.+.||+|++|.-++++ .++.-++ ...-..+.|.-++.++++.+.|
T Consensus 708 ~~~~~-~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 708 ANAKL-YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhh-hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 98775 677889999999999999987 66688889999999998754 3333332 2334568899999998888765
Q ss_pred C----eEEEEECCCc
Q 004207 704 N----YISILDVETQ 714 (768)
Q Consensus 704 g----~I~IwD~~t~ 714 (768)
. .|.+||..+.
T Consensus 786 k~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTL 800 (1012)
T ss_pred ccchhhhhhhhhhhc
Confidence 4 4778887664
No 168
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.7e-15 Score=164.49 Aligned_cols=220 Identities=15% Similarity=0.271 Sum_probs=159.4
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRV 623 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrV 623 (768)
....+.+|++.|.|+.|+.||.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| +.+++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34567899999999999999999999999999999999888877766 68999999999998 4678999999999999
Q ss_pred EECCC---------CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec----------CC
Q 004207 624 WDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QS 683 (768)
Q Consensus 624 WDl~t---------~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~----------~~ 683 (768)
||+.. .+.....+.+|...|..|+..|++.+.|.++++||+|+-+|++... |...... --
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 2334567788999999999999998999999999999999998632 1111100 12
Q ss_pred CeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeee-c-----------ceeEEeecCCCceEEecc-CC---CCeeEE
Q 004207 684 GATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLK-L-----------QTLELWNMTENKTLTLSA-HD---KLVSSL 746 (768)
Q Consensus 684 ~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~-~-----------~~I~iwd~~~~~~~~l~~-H~---~~I~sl 746 (768)
...++.++|...+ |++|+.|-..++||.+....... . .++..|.... +....+ .. ..++-+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h--lkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH--LKNSQGNLDRYITCCTYV 279 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc--ccCcccccccceeeeEEE
Confidence 3567889987655 77788899999999543211100 0 0122221110 000001 01 125678
Q ss_pred EEeCCCCEEEEEECCCcEEEeC
Q 004207 747 AASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 747 a~spdg~~LaSgs~DG~V~IWD 768 (768)
.|+|+|.-|++.-....|++||
T Consensus 280 tfnpNGtElLvs~~gEhVYlfd 301 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFD 301 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEe
Confidence 8999997555554445787775
No 169
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.7e-14 Score=151.14 Aligned_cols=261 Identities=13% Similarity=0.125 Sum_probs=177.3
Q ss_pred ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEe-cCCCCCeEEEEEcCCCCEEEEE
Q 004207 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATG 573 (768)
Q Consensus 495 ~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~I~sl~fSpdg~~LaSg 573 (768)
-.+....+...+++|++|+.|..+++|........+ ..+++... ..|...|.|++|.....+|++|
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhc-------------CCCCceeccCccccceEEEEEccCCeeEecC
Confidence 345566677789999999999999999543321110 01122222 3466899999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee--EEEeecCCCCeEEEEEe
Q 004207 574 GHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFH 649 (768)
Q Consensus 574 s~Dg~I~VWdl~t~~~~~tl~~--h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~--~~~~~~h~~~V~slafs 649 (768)
+.+++|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.+..... +...........++.|+
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 9999999999999888776632 2358999999999999999999999999999864422 23334455678899999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCee-EEEEe------c-CCCeeEEEEecCCCE-------------------------
Q 004207 650 PSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK------C-QSGATQMRFQPRLGR------------------------- 696 (768)
Q Consensus 650 p~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~~------~-~~~i~sl~fsp~~~~------------------------- 696 (768)
|....+|++.+..+-+.+||++.... +.... . ......+.|+|.|+.
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 99999999999999999999974211 00000 0 011123334444333
Q ss_pred -----------------------EEEEEcCCeEEEEECCCceEeeecceeEE------ee-cCCCceEEeccCCCCeeEE
Q 004207 697 -----------------------ILAAAIENYISILDVETQVCRLKLQTLEL------WN-MTENKTLTLSAHDKLVSSL 746 (768)
Q Consensus 697 -----------------------llags~Dg~I~IwD~~t~~~~~~~~~I~i------wd-~~~~~~~~l~~H~~~I~sl 746 (768)
+++|+.+-.|++|.+........+..|-- -. +..+....+.+|...++.|
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 44444444455554432211110000000 00 1123345788999999999
Q ss_pred EEeCCCCEEEEEECCCcEEEeC
Q 004207 747 AASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 747 a~spdg~~LaSgs~DG~V~IWD 768 (768)
.|++...+|++.+....++||.
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecCCcceEeccchhhheeccc
Confidence 9999999999999999999993
No 170
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=6.1e-15 Score=161.76 Aligned_cols=205 Identities=15% Similarity=0.266 Sum_probs=159.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
...-.|...|..+.|+..|.||++...+ ..|.|+.+...+...-|....+.|.++.|+|...+|++++ -..|+|||
T Consensus 515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYd 593 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYD 593 (733)
T ss_pred EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEe
Confidence 4555788899999999999999988654 4699999987776666655667899999999988888876 45799999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEec-CCCeeEEEEecCCCEEEEEEcC
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~-~~~i~sl~fsp~~~~llags~D 703 (768)
+..... +..+......|.+++.||.|.++| .|+.|+.++.||+.-. +....+.. ...+++|+|++.-..+++|+.|
T Consensus 594 L~kqel-vKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 594 LSKQEL-VKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred hhHHHH-HHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 987543 444444556799999999999877 6788999999999754 44555554 4568999999998889999999
Q ss_pred CeEEEEECCCceEeeecceeEEeecCCCc----eEEeccCCCC----eeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 704 NYISILDVETQVCRLKLQTLELWNMTENK----TLTLSAHDKL----VSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 704 g~I~IwD~~t~~~~~~~~~I~iwd~~~~~----~~~l~~H~~~----I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+++.||.-.-.. |+..+. +..+.+|... |..+.|+|...+|++++.||+|++|
T Consensus 672 gtv~Vfhg~VY~-----------Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 672 GTVIVFHGMVYN-----------DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CcEEEEeeeeeh-----------hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 999988542211 121111 1245577654 8999999999999999999999998
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=8.8e-14 Score=138.51 Aligned_cols=202 Identities=12% Similarity=0.155 Sum_probs=141.0
Q ss_pred ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 004207 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (768)
Q Consensus 500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I 579 (768)
.+..+...|+++|+.+|.|.++....-..+.. .......+....+|.++|+.++|. ..+|++|+ ||.|
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V 83 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLV 83 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceE
Confidence 34567788999999999999984433211111 111123455568999999999997 45677765 5999
Q ss_pred EEEECCCCeE------EEEe--ccCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207 580 VLWCTESFTV------KSTL--EEHT-----QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (768)
Q Consensus 580 ~VWdl~t~~~------~~tl--~~h~-----~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl 646 (768)
+-|....... +... .-|. -.|+++...|..+-+++++.|+.++-||+++++. .+.+.+|...|.++
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-QREYRGHTDYVHSV 162 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE-EEEEcCCcceeeee
Confidence 9997654221 1111 1122 3588999999877788888999999999999886 89999999999999
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-----------eeEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004207 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------ATQMRFQPRLGRILAAAIENYISILDVETQV 715 (768)
Q Consensus 647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~-----------i~sl~fsp~~~~llags~Dg~I~IwD~~t~~ 715 (768)
.--.....+| +|++||++++||.++++++..+..... |.+++.+. .++++|+ ...+.+|.++..+
T Consensus 163 v~R~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 163 VGRNANGQIL-SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred eecccCccee-ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEecC-CCceeEEeccCCC
Confidence 8844434344 999999999999999999888764111 33444443 3555544 4557778777765
Q ss_pred Eee
Q 004207 716 CRL 718 (768)
Q Consensus 716 ~~~ 718 (768)
+..
T Consensus 239 ~t~ 241 (325)
T KOG0649|consen 239 STC 241 (325)
T ss_pred ceE
Confidence 543
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=149.69 Aligned_cols=230 Identities=15% Similarity=0.206 Sum_probs=166.1
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCC---CeEEEEEcCCCCEEEEEeC
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH 575 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~---~I~sl~fSpdg~~LaSgs~ 575 (768)
.....+...++++.+.|.-|++|+.-++... ..+.. -.|-+ ...|++|+|||..|++| .
T Consensus 116 M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr-------------aSy~~----ydh~de~taAhsL~Fs~DGeqlfaG-y 177 (406)
T KOG2919|consen 116 MKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR-------------ASYRA----YDHQDEYTAAHSLQFSPDGEQLFAG-Y 177 (406)
T ss_pred cccCCCccceeeeccccCceeeeeccccccc-------------cchhh----hhhHHhhhhheeEEecCCCCeEeec-c
Confidence 4445667778888888888888866544210 01111 12222 35689999999999877 5
Q ss_pred CCcEEEEEC-CCCeEE--E-Ee----ccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207 576 DKKAVLWCT-ESFTVK--S-TL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (768)
Q Consensus 576 Dg~I~VWdl-~t~~~~--~-tl----~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl 646 (768)
...|+|||+ +.++.. . ++ .+..+.|.|++|+|. .+.+++++...++-||.-.... ++..+.+|.+.|+.+
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gGvThL 256 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGGVTHL 256 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCCeeeE
Confidence 678999998 444321 1 11 233678999999995 5689999999999999877655 478888999999999
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCC----eeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc
Q 004207 647 DFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSG----ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (768)
Q Consensus 647 afsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~~~~----i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~ 721 (768)
.|+++|+.++.-+..|-.|.+||+|.. .++..+..+.. -.-+...|.+++|++|+.||.|++||+.+...
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn----- 331 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN----- 331 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC-----
Confidence 999999988866667889999999863 34444443222 12345578899999999999999999987211
Q ss_pred eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207 722 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 762 (768)
Q Consensus 722 ~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG 762 (768)
.+..+..|+..|+.|+++|--.++++++...
T Consensus 332 ----------~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 332 ----------EVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ----------cccccccccccccceecCcccceeeeccCce
Confidence 1234457888899999999888888877543
No 173
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=8.2e-15 Score=156.02 Aligned_cols=192 Identities=23% Similarity=0.230 Sum_probs=149.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee-
Q 004207 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 637 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~- 637 (768)
.+++|+.+|..|++++.||+++||+......+.....|...|.++.|+||+++|++.+.| ..+||+++++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 689999999999999999999999988888888888899999999999999999999999 899999998853 33322
Q ss_pred -cCCCCeEEEEEeCCC---C-eEEEEEeCCCcEEEEECCCCee------EEEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 004207 638 -GHSTTVMSLDFHPSK---E-DLLCSCDNNSEIRYWSINNGSC------AGVFKCQSGATQMRFQPRLGRILAAAIENYI 706 (768)
Q Consensus 638 -~h~~~V~slafsp~g---~-~lLaSgs~Dg~I~iWDl~sg~~------i~~~~~~~~i~sl~fsp~~~~llags~Dg~I 706 (768)
.-...+..+.|.-++ . ++++.-...+.|+.||+..... ...+.....|++++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223345667777664 2 2333334456677777653222 1222235689999999999999999999999
Q ss_pred EEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 707 SILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 707 ~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
.||+..+..+....+ ..|...|+.|.|+|+.+++++.+.|..+.|.
T Consensus 306 ai~~~~~lq~~~~vk---------------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVK---------------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEEeceeeeeEeeh---------------hhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 999988766543322 3799999999999999999999888877653
No 174
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.5e-14 Score=148.42 Aligned_cols=152 Identities=18% Similarity=0.297 Sum_probs=120.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE
Q 004207 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (768)
Q Consensus 600 V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~ 679 (768)
..|+.|++.|.+||+|+.||.|.|||+.+... .+.+.+|..+|++++|+++|+.+| |++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-ar~lsaH~~pi~sl~WS~dgr~Ll-tsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-ARMLSAHVRPITSLCWSRDGRKLL-TSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch-hhhhhccccceeEEEecCCCCEee-eecCCceeEEEeccCCCceeEE
Confidence 68999999999999999999999999998663 788999999999999999988555 9999999999999999988888
Q ss_pred ecCCCeeEEEEecC-----------------------------------------------CCEEEEEEcCCeEEEEECC
Q 004207 680 KCQSGATQMRFQPR-----------------------------------------------LGRILAAAIENYISILDVE 712 (768)
Q Consensus 680 ~~~~~i~sl~fsp~-----------------------------------------------~~~llags~Dg~I~IwD~~ 712 (768)
....+|..+.|+|. |+++++|...|.+.+||..
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 77666655555553 4455555555555555555
Q ss_pred CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 713 TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 713 t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.+++..++ + .....|..+.|+-.|++|+.-+.|..|+.|+
T Consensus 184 t~e~vas~r--------------i-ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 184 TLECVASFR--------------I-TSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred hheeeeeee--------------e-chheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 554443322 0 0125688899999999999999999999985
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=2.9e-16 Score=177.09 Aligned_cols=217 Identities=22% Similarity=0.358 Sum_probs=170.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
+.++.+.+|...|+|+.|...|.+|++|+.|..|+||..++..++..+.+|.+.|+.++.+.+..++++++.|..|+||-
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34567789999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEE-----EecCCCeeEEEEecCCCEEEEE
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----FKCQSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~-----~~~~~~i~sl~fsp~~~~llag 700 (768)
+.++.. +..+.+|.+.|++|+|+|.- +.+.||++++||.+-...+.. +....-+.++.|-..+..++++
T Consensus 261 l~~~~p-vsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGAP-VSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCch-HHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 998764 88899999999999999863 677899999999982222211 1123345566666666667777
Q ss_pred EcCCeEEEEECCCceE-------------------ee-ecceeEEeecCCCceE-EeccCCCCeeEEEEeCCCC-EEEEE
Q 004207 701 AIENYISILDVETQVC-------------------RL-KLQTLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASA 758 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~-------------------~~-~~~~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~-~LaSg 758 (768)
+.|+.-..|.+.-..+ .. ....+.+|++.++... .+.+|...+..+.++|-.. .-.++
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 7776555443321100 00 0114667888777655 4568999999999999775 45688
Q ss_pred ECCCcEEEeC
Q 004207 759 SHDKCVKIWK 768 (768)
Q Consensus 759 s~DG~V~IWD 768 (768)
+.||.+.|||
T Consensus 415 g~dgst~iwd 424 (1113)
T KOG0644|consen 415 GYDGSTIIWD 424 (1113)
T ss_pred cCCCceEeee
Confidence 9999999997
No 176
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.60 E-value=5.4e-13 Score=145.83 Aligned_cols=241 Identities=12% Similarity=0.198 Sum_probs=160.2
Q ss_pred EEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-C
Q 004207 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-S 586 (768)
Q Consensus 509 latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs-~Dg~I~VWdl~-t 586 (768)
.++...|+.|.+|..... + .+..+..+. +.+....++++|++++|++++ .++.|.+|+++ +
T Consensus 5 y~~~~~~~~I~~~~~~~~--g--------------~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~ 67 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE--G--------------ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD 67 (330)
T ss_pred EEEcCCCCCEEEEEECCC--C--------------ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC
Confidence 344567899999965321 1 122333333 234577899999999887664 57889999986 3
Q ss_pred CeE--EEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCe---eEEEeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207 587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 587 ~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g~~lLaSgs 660 (768)
++. +.... .......++|+|++++|++++. ++.|.+|++++... .+..+. +.....+++++|+++.+++++.
T Consensus 68 g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 68 GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC
Confidence 332 22222 2335678999999999888875 78999999974321 122222 3345678899999998888888
Q ss_pred CCCcEEEEECCCCeeEE-------EEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC--ce--Eeeec--------
Q 004207 661 NNSEIRYWSINNGSCAG-------VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--QV--CRLKL-------- 720 (768)
Q Consensus 661 ~Dg~I~iWDl~sg~~i~-------~~~~~~~i~sl~fsp~~~~llags~-Dg~I~IwD~~t--~~--~~~~~-------- 720 (768)
.++.|.+||+.+...+. .+........+.|+|++.+++++.. ++.|.+||+.. +. ....+
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 88999999997632221 1223455678999999999988876 89999999863 11 11000
Q ss_pred ------------------------ceeEEeecCCCc-eEEeccC---CCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207 721 ------------------------QTLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK 768 (768)
Q Consensus 721 ------------------------~~I~iwd~~~~~-~~~l~~H---~~~I~sla~spdg~~LaSgs~-DG~V~IWD 768 (768)
..|.+|++.... ..++..| ......++|+|+|++|+++.. +++|.||+
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 056666654321 2222222 124568899999999998875 89999984
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.59 E-value=1.1e-14 Score=150.30 Aligned_cols=214 Identities=18% Similarity=0.325 Sum_probs=166.7
Q ss_pred ecCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCe---EEEEe--ccCCCCEEEEEEcCC----CCEEEEEe
Q 004207 551 IPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLATSS 616 (768)
Q Consensus 551 l~~H~~~I~sl~fSp-----dg~~LaSgs~Dg~I~VWdl~t~~---~~~tl--~~h~~~V~sl~fspd----g~~LaTgs 616 (768)
...|+.+|..++|++ +-..+++++. .+|.+|...... .+..+ ..|....+.++|+-+ ..+||.++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457889999999985 2235666665 478888765432 33333 236777888999764 45789999
Q ss_pred CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeeEEEEec
Q 004207 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQP 692 (768)
Q Consensus 617 ~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----~~~i~sl~fsp 692 (768)
.-|.|+|.|+.++.. ...+.+|...|..|.|+|+...++++|+.|..|++|++++..|+.+|.+ ...|.++.|++
T Consensus 113 ~~GvIrVid~~~~~~-~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQC-SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred ceeEEEEEecchhhh-ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 999999999998775 7888999999999999999999999999999999999999999999875 45699999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCc-------eE-----EeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 693 RLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENK-------TL-----TLSAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 693 ~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~-------~~-----~l~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
++.+|++++.|..|++|++........++...-|...... .. +...|...|-|+.|- |+++++-|-
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 9999999999999999999865443333322222211111 00 334689999999998 789999999
Q ss_pred CCcEEEeC
Q 004207 761 DKCVKIWK 768 (768)
Q Consensus 761 DG~V~IWD 768 (768)
++.|..|+
T Consensus 270 enaI~~w~ 277 (385)
T KOG1034|consen 270 ENAIVCWK 277 (385)
T ss_pred CceEEEEe
Confidence 99999995
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.59 E-value=1.8e-13 Score=151.28 Aligned_cols=204 Identities=15% Similarity=0.262 Sum_probs=155.4
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--------EEe-------------------------
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--------STL------------------------- 593 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~--------~tl------------------------- 593 (768)
.+.++++|.+.|+|++|+.||+.||+|+.|+.|.||+-+-...+ ..+
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK 124 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK 124 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence 46788999999999999999999999999999999975421111 000
Q ss_pred --c--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-eeEEEeecCCCCeEEEEEeCCC----CeEEEEEeCCCc
Q 004207 594 --E--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK----EDLLCSCDNNSE 664 (768)
Q Consensus 594 --~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~-~~~~~~~~h~~~V~slafsp~g----~~lLaSgs~Dg~ 664 (768)
. .....|.+++|..||.+|+.|-.||+|.|-+-...+ ..+....+..++|.+++|+|.. ..++++.+...+
T Consensus 125 ~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT 204 (1081)
T KOG1538|consen 125 SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT 204 (1081)
T ss_pred hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence 0 022357888999999999999999999998654322 2233334567899999999863 357888888889
Q ss_pred EEEEECCCCeeEE-EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCe
Q 004207 665 IRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLV 743 (768)
Q Consensus 665 I~iWDl~sg~~i~-~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I 743 (768)
+.+|.+. |+.+. .-...-...|+.+.++|.+++.|+.|+.+.+|.-+.- .. -++...+..|
T Consensus 205 LSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv-rL----------------GTvg~~D~WI 266 (1081)
T KOG1538|consen 205 LSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV-RL----------------GTVGEQDSWI 266 (1081)
T ss_pred eEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe-EE----------------eeccccceeE
Confidence 9999886 55444 3333566788999999999999999999998865431 11 1223456789
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 744 SSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 744 ~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++|+..|++.+++.|+.||+|..|+
T Consensus 267 WtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 267 WTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred EEEEEccCCceEEEEEccCeeehhh
Confidence 9999999999999999999998774
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=9.9e-14 Score=157.39 Aligned_cols=194 Identities=19% Similarity=0.209 Sum_probs=137.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeE--EEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEE
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVR 622 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIr 622 (768)
..+..|...|.+.+|||||+.|+.++.+ ..|++||+.+++. +..+.+| ..+++|+|||+.|++++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3455778889999999999999887654 3699999988754 3333333 44789999999888764 688766
Q ss_pred EE--ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEecCCCeeEEEEecCCCEEEE
Q 004207 623 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA 699 (768)
Q Consensus 623 VW--Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~~~~i~sl~fsp~~~~lla 699 (768)
|| |+.++. +..+..+...+.++.|+|+|+.++++++.++.+.||++... .....+.. .. ..+.|+|++.++++
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~-~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG-YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC-CCccCCCCCCEEEE
Confidence 55 555544 45566677778899999999988878777888888876532 22222322 22 45789999999888
Q ss_pred EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
++.++ +.+||+.++.... +..+ ....++.|+|++.+|++++.+|.+.+|+
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~-----------------lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEV-----------------LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred EcCCC-EEEEECCCCCeEE-----------------ecCC-CCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 77754 5558877654321 1111 1134678999999999999999888763
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=2.5e-14 Score=155.16 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=154.6
Q ss_pred CEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (768)
Q Consensus 507 ~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t 586 (768)
..++..+.||.+.+..... +..+.+.+|.+.|.|-.|+|||.-|++++.||.|++|.. +
T Consensus 76 d~~~i~s~DGkf~il~k~~--------------------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-s 134 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA--------------------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-S 134 (737)
T ss_pred ceEEEEcCCceEEEecccc--------------------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-c
Confidence 3455667788877762211 123456799999999999999999999999999999984 4
Q ss_pred CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 004207 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (768)
Q Consensus 587 ~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~ 666 (768)
|-+..++.-...+|+|++|.|+.+.++.| ..+.+.|=.+..... +..+.+|.+-|.+++|++..+ ++++|++|...+
T Consensus 135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK 211 (737)
T KOG1524|consen 135 GMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK 211 (737)
T ss_pred chHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccc-eeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence 55556666667889999999987665554 345566666654443 677889999999999999855 888999999999
Q ss_pred EEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEE
Q 004207 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSL 746 (768)
Q Consensus 667 iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sl 746 (768)
+||.-.......-.++.+|++++|.|+ ..++.++ -+++++ .....+.|..+
T Consensus 212 vWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S-~nt~R~---------------------------~~p~~GSifnl 262 (737)
T KOG1524|consen 212 IWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWS-YNTARF---------------------------SSPRVGSIFNL 262 (737)
T ss_pred eecccCcccccCChhccceeeeeeccc-cceeeee-eeeeee---------------------------cCCCccceEEE
Confidence 999874444344445778999999999 4344433 333331 11345779999
Q ss_pred EEeCCCCEEEEEECCCcEEE
Q 004207 747 AASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 747 a~spdg~~LaSgs~DG~V~I 766 (768)
+|++||..+++|+..|.|.+
T Consensus 263 sWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 263 SWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred EEcCCCceeeccccCceEEE
Confidence 99999999999999998754
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.57 E-value=4.6e-14 Score=143.51 Aligned_cols=202 Identities=17% Similarity=0.319 Sum_probs=151.8
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEeCC-------CcEEEEECCC---------CeEEEEec-cCCCCEEEEEEcCCCC
Q 004207 549 QLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTLE-EHTQWITDVRFSPSLS 610 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSp-dg~~LaSgs~D-------g~I~VWdl~t---------~~~~~tl~-~h~~~V~sl~fspdg~ 610 (768)
+.|..|.+.|..|+-+| |.+.|+++..| ..+.||.+.. .+++..+. .+-+.|.||.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 45667889999999999 66677777552 2478998764 23344443 4556899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCeeEEEe-----ecCCCCeEEEEEeCC-CCeEEEEEeCCCcEEEEECCCCeeEEEEec--C
Q 004207 611 RLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q 682 (768)
Q Consensus 611 ~LaTgs~DgtIrVWDl~t~~~~~~~~-----~~h~~~V~slafsp~-g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~ 682 (768)
.|++-. |..|.+|++......+..+ ..|....++-+|+|. ..+.+++. .|+++..||+|+.++...+.. .
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence 888875 8899999998765423222 235566888899983 23344444 489999999999888877763 4
Q ss_pred CCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEEC
Q 004207 683 SGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASH 760 (768)
Q Consensus 683 ~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~ 760 (768)
..|..+.|+|+..+ |++++.|+.|+|||.+..+. .+.++.+|.-.|.+|.|+|.. .+|++||.
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---------------PVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---------------cccccCCCceEEEEEEecCccceEEEecCC
Confidence 45899999998776 56677899999999987433 244667999999999999975 58889999
Q ss_pred CCcEEEe
Q 004207 761 DKCVKIW 767 (768)
Q Consensus 761 DG~V~IW 767 (768)
|..|.+|
T Consensus 280 Ds~V~Ls 286 (370)
T KOG1007|consen 280 DSAVNLS 286 (370)
T ss_pred CceeEEE
Confidence 9999887
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7e-14 Score=146.58 Aligned_cols=218 Identities=17% Similarity=0.231 Sum_probs=159.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCc
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT 620 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t------~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~Dgt 620 (768)
.+.+.+|.+.|.+|.|+.++++|++|+.|..++||+++. .+++.... .|...|.|++|....++|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 355679999999999999999999999999999999864 34444332 35688999999999999999999999
Q ss_pred EEEEECCCCCeeEEEee--cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe----eEEEEecCCCeeEEEEecCC
Q 004207 621 VRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPRL 694 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~--~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~----~i~~~~~~~~i~sl~fsp~~ 694 (768)
|.+.|+++... +..+. ...+.|+.+..+|. .++|++.+.++.|.+||.+... ++..-........+.|+|..
T Consensus 129 VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIETKQS-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeeccccee-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999998653 43333 23458999999999 4577788899999999998644 22222335668889999987
Q ss_pred CEEE-EEEcCCeEEEEECCCceEeee-------cc-------------------------eeEEeecCCCceEEec-cCC
Q 004207 695 GRIL-AAAIENYISILDVETQVCRLK-------LQ-------------------------TLELWNMTENKTLTLS-AHD 740 (768)
Q Consensus 695 ~~ll-ags~Dg~I~IwD~~t~~~~~~-------~~-------------------------~I~iwd~~~~~~~~l~-~H~ 740 (768)
..|+ +.+..+.+-+||.+....... +. .-.+||+....+..+. .|.
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 7654 556678899999876422110 00 2234455544443332 332
Q ss_pred C-------CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 741 K-------LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 741 ~-------~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
. .|.+++|..+ ..|++|+.+-.|++|+
T Consensus 287 ~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWK 320 (609)
T ss_pred CCcceeeeeeeeeeeecc-eeeeccCcccceEEEe
Confidence 2 4667777654 3489999999999995
No 183
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.56 E-value=3.2e-14 Score=157.12 Aligned_cols=204 Identities=19% Similarity=0.257 Sum_probs=151.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEe
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~ 636 (768)
.|+.++|-|||.-|+.+.. ..+.|||...|..+.++++|.+.|+||+|+.||++|++|+.|+.|.||...-.. +..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~Lk- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILK- 89 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eee-
Confidence 6999999999998877754 579999999999999999999999999999999999999999999999876433 122
Q ss_pred ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (768)
Q Consensus 637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~ 716 (768)
-.|...|.|+.|+|-.. .+++|+- ...-+|...... +...+....+.+++|..+|.+++.|-.+|+|.|-+......
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 24889999999999854 6667774 356788776433 33333456788999999999999999999999876544322
Q ss_pred eeecc--------------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 004207 717 RLKLQ--------------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 764 (768)
Q Consensus 717 ~~~~~--------------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V 764 (768)
+...+ ++.++.+....+-.-..-.-...|+.+.++|.|+..||.|+.+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 21111 2222222111111111222346789999999999999999999
Q ss_pred EEe
Q 004207 765 KIW 767 (768)
Q Consensus 765 ~IW 767 (768)
++|
T Consensus 247 ~~f 249 (1081)
T KOG1538|consen 247 SLF 249 (1081)
T ss_pred EEE
Confidence 887
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.9e-13 Score=157.91 Aligned_cols=247 Identities=15% Similarity=0.166 Sum_probs=172.7
Q ss_pred CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd 583 (768)
....++.+|+.||.||+|..-....++.+++..|..-.+. . .+..+.=.-+.|.-...+|+++|.-..|+|||
T Consensus 1121 ~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~-----~--~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWD 1193 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ-----L--PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWD 1193 (1387)
T ss_pred cchhheeeeccCceEEEecccccccCCceeEEeecccccc-----C--ccCCCCCeeeehhhhCCeEEecCCeeEEEEEe
Confidence 3456788999999999995433332334444444332221 1 11111113467877666777777788999999
Q ss_pred CCCCeEEEEecc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCCCC--eEEEEEeCCCCeEEE
Q 004207 584 TESFTVKSTLEE-HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTT--VMSLDFHPSKEDLLC 657 (768)
Q Consensus 584 l~t~~~~~tl~~-h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~~~--V~slafsp~g~~lLa 657 (768)
.....++..+.. ....|+++.-+- .|+.|+.|..||.||+||.+... ..+..+..|... |..+.+.+.|-.-|+
T Consensus 1194 a~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1194 AHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred cccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCccee
Confidence 998777776643 344566665433 47999999999999999987543 356778888887 999999998776678
Q ss_pred EEeCCCcEEEEECCCCeeEEEEe------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCC
Q 004207 658 SCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTEN 731 (768)
Q Consensus 658 Sgs~Dg~I~iWDl~sg~~i~~~~------~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~ 731 (768)
+|+.||.|++||+|.......+. .++..+++..+++...+++|+. +.|.||++....... ++ ++
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~----~k-~n---- 1343 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI----IK-YN---- 1343 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc----cc-cC----
Confidence 99999999999999743222211 1334899999999887777777 999999997654321 11 11
Q ss_pred ceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 732 KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 732 ~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...+.-..+.+.|++|+|..-+||+|+.|.+|.||.
T Consensus 1344 -~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1344 -PGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred -cccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 111222345679999999999999999999999983
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=7.4e-14 Score=145.09 Aligned_cols=187 Identities=17% Similarity=0.303 Sum_probs=148.0
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCe-eEEEeecCC-CCe
Q 004207 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV 643 (768)
Q Consensus 568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp--dg~~LaTgs~DgtIrVWDl~t~~~-~~~~~~~h~-~~V 643 (768)
..+|++...|.|++||..++..+..++++...++.++|.. ....+.+|+.||+||+||++.... ....+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688888899999999999999999999999999999976 467899999999999999987543 345556665 466
Q ss_pred EEEEEeCCCCeEEEEEe----CCCcEEEEECCCCee-EEEEe--cCCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCce
Q 004207 644 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPRLG-RILAAAIENYISILDVETQV 715 (768)
Q Consensus 644 ~slafsp~g~~lLaSgs----~Dg~I~iWDl~sg~~-i~~~~--~~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~ 715 (768)
.|++.... ..++++|. .+-.|.+||+|.... ++.+. ++..|++++|+|... .|++|+.||.|.+||+....
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 77776655 44777764 366799999998765 55543 578899999999764 58889999999999997631
Q ss_pred EeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207 716 CRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 716 ~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD 768 (768)
++..++....|...|.++.|..++ +.|.+-+..++..+|+
T Consensus 200 -------------EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 200 -------------EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred -------------chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence 222333445678889999999877 4688999999999996
No 186
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.54 E-value=1.1e-13 Score=146.38 Aligned_cols=203 Identities=20% Similarity=0.318 Sum_probs=156.5
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 555 TSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (768)
Q Consensus 555 ~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~---------~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW 624 (768)
..+|.++.|..+.. .|+||+.|..|+||-+... +.+..+..|...|++|+|+|+|.+|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45799999999766 9999999999999976532 2345677899999999999999999999999999999
Q ss_pred ECC--------C-----C--CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEE
Q 004207 625 DTE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQM 688 (768)
Q Consensus 625 Dl~--------t-----~--~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl 688 (768)
... + . ......+.+|...|+.++|+|++. ++++++.|..+++||+..|.....+.. ...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 765 2 1 123456778999999999999976 666899999999999999999888765 5668899
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEeeecce----eEEeecCCCceEEeccCCC----CeeEEEEeCCCCEEEEEE
Q 004207 689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQT----LELWNMTENKTLTLSAHDK----LVSSLAASTVNGMVASAS 759 (768)
Q Consensus 689 ~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~----I~iwd~~~~~~~~l~~H~~----~I~sla~spdg~~LaSgs 759 (768)
+|.|.+.++++-+.|...+++.+.....+..... .....-..++...+. |++ -...++|+|+|.+|++.+
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf-hDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF-HDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee-ecCchhhhhhhcccCCCCcEEEccc
Confidence 9999999999999998888888776655444331 111122223333322 222 245688999999988764
No 187
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=1.2e-12 Score=153.62 Aligned_cols=258 Identities=17% Similarity=0.212 Sum_probs=175.0
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
.....++..++++||.||+|++|+..+-. +.+...+...++..-..++.++...+.+..+|+++.||.
T Consensus 1054 ~a~s~~~~s~FvsgS~DGtVKvW~~~k~~------------~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1054 LAVSSEHTSLFVSGSDDGTVKVWNLRKLE------------GEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred eeecCCCCceEEEecCCceEEEeeehhhh------------cCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 33345667999999999999999665431 112333444445545678999999999999999999999
Q ss_pred EEEEECCCCe-------------------EEE----------------E------------------e--ccCCCCEEEE
Q 004207 579 AVLWCTESFT-------------------VKS----------------T------------------L--EEHTQWITDV 603 (768)
Q Consensus 579 I~VWdl~t~~-------------------~~~----------------t------------------l--~~h~~~V~sl 603 (768)
|.+.+++..+ .+. + + ....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 9998775310 000 0 0 0123569999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC---eEEEEEe-CCCcEEEEECCCCeeEEEE
Q 004207 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE---DLLCSCD-NNSEIRYWSINNGSCAGVF 679 (768)
Q Consensus 604 ~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~---~lLaSgs-~Dg~I~iWDl~sg~~i~~~ 679 (768)
+.+|.+.++++|...|.+.+||++-+.........+..+|..+..+|... ..++++. ..+.|.+|++.+|.+..++
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 99999999999999999999999976553444445667888888877543 3444444 5789999999999877766
Q ss_pred ecCCC--------------------eeEEEEecCCCEEEEEEcCCeEEEEECCCceEee-ecc-----------------
Q 004207 680 KCQSG--------------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQ----------------- 721 (768)
Q Consensus 680 ~~~~~--------------------i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~-~~~----------------- 721 (768)
..... ...+.+...++.++++++|..|+.||........ ...
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~ 1361 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLST 1361 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccc
Confidence 54311 1123334445789999999999999987654331 000
Q ss_pred ---------------eeEE-------eecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 004207 722 ---------------TLEL-------WNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 768 (768)
Q Consensus 722 ---------------~I~i-------wd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V~IWD 768 (768)
++.. -.+..+.......|...|+++++.... .+|++++.||.|+||+
T Consensus 1362 i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1362 IPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0000 000011111233588899999876544 6999999999999996
No 188
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.53 E-value=6.5e-13 Score=137.11 Aligned_cols=213 Identities=15% Similarity=0.192 Sum_probs=161.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-C
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-N 628 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t---~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~-t 628 (768)
--..+|+|.+|++|+..+|++.....|.||.... .+...++..|...|++|+|+|..+.|++|+.|..-+||... .
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 3456899999999999999999999999998765 35778999999999999999999999999999999999984 3
Q ss_pred CC-eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-----cCCCeeEEEEecCCCEEEEEEc
Q 004207 629 PD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 629 ~~-~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-----~~~~i~sl~fsp~~~~llags~ 702 (768)
++ .+...+..+...+++|.|+|.++ .|++|+.-..|.||-.+...--.+-+ ....|.++.|+|++-.+++|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 33 22345566889999999999965 77799988899888776543221111 2467899999999888999999
Q ss_pred CCeEEEEECCCceEeeecceeEEeecC--CCceE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 703 ENYISILDVETQVCRLKLQTLELWNMT--ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 703 Dg~I~IwD~~t~~~~~~~~~I~iwd~~--~~~~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
|+..+||...-... .....-..|+-+ -+.++ ++....+.|..+.|+|.|..|+-.+.|..|.+=
T Consensus 167 D~k~rVfSayIK~V-dekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGV-DEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred CcceeEEEEeeecc-ccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 99999986422110 000011122211 12222 233556789999999999999999999998764
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.52 E-value=8.6e-13 Score=150.87 Aligned_cols=236 Identities=14% Similarity=0.150 Sum_probs=169.5
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLW 582 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~--~LaSgs~Dg~I~VW 582 (768)
+..+++.|+.+|.|.+|+.....+.. ..+. -.....|..+|+.+.|-.+-. -|++++.||.|+.|
T Consensus 254 ~p~ll~gG~y~GqV~lWD~~~~~~~~---------~s~l----s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 254 DPNLLAGGCYNGQVVLWDLRKGSDTP---------PSGL----SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred CcceEEeeccCceEEEEEccCCCCCC---------Cccc----ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 56789999999999999776554321 0011 122347899999999977444 49999999999999
Q ss_pred ECCCCeEEE------Eec------cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEC---CCCC----eeEEEeecCCCC
Q 004207 583 CTESFTVKS------TLE------EHTQWITDVRFSP-SLSRLATSSADRTVRVWDT---ENPD----YSLRTFTGHSTT 642 (768)
Q Consensus 583 dl~t~~~~~------tl~------~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl---~t~~----~~~~~~~~h~~~ 642 (768)
+++...... ... .....+++++|.+ +...|+.|+.+|.|..-.- +... .....+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 877533210 011 1224589999988 4668999999998877332 2222 113356678999
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeEEEEec-CCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeee
Q 004207 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~~~~-~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~ 719 (768)
|+++.++|-+..+|.+++ |.+|+||... ...++..+.. ...+++++|+|.... |+++..||.|.|||+......
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~-- 477 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE-- 477 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC--
Confidence 999999999888888887 9999999987 5555555554 344999999998665 455556999999998764322
Q ss_pred cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 720 LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 720 ~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+.+...+....+.+.|++.|.+|++|...|.|++|+
T Consensus 478 ------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 478 ------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred ------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 1222223456677888999999999999999999985
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=3.2e-12 Score=127.54 Aligned_cols=195 Identities=17% Similarity=0.255 Sum_probs=144.3
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
++.++.+|+ ||.|+-|...+.... ....+.|+..... +.-...-..|+++...|..+.|+.++.|+.++.||+
T Consensus 71 ~d~~Lls~g-dG~V~gw~W~E~~es-~~~K~lwe~~~P~-----~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl 143 (325)
T KOG0649|consen 71 HDDFLLSGG-DGLVYGWEWNEEEES-LATKRLWEVKIPM-----QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL 143 (325)
T ss_pred ehhheeecc-CceEEEeeehhhhhh-ccchhhhhhcCcc-----ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence 466777775 499999976654322 2223334332211 110112245899999998888888889999999999
Q ss_pred CCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee---------cC-CCCeEEEEEeCCCCe
Q 004207 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT---------GH-STTVMSLDFHPSKED 654 (768)
Q Consensus 585 ~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~---------~h-~~~V~slafsp~g~~ 654 (768)
++++...++++|++.|.++.-......+++|+.||++||||+++.+. +..+. .| ...|.+++.+.+
T Consensus 144 E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~ed--- 219 (325)
T KOG0649|consen 144 EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNED--- 219 (325)
T ss_pred cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccCc---
Confidence 99999999999999999999866666799999999999999999875 43332 12 234667776643
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
.+ +|+....+.+|.++..+++.+|.....+..+.|..+ .+++++..+.|.-|.+..
T Consensus 220 Wl-vCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 220 WL-VCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eE-EecCCCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 44 344467899999999999999999999999999876 688888788888887654
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=5.4e-13 Score=145.23 Aligned_cols=196 Identities=18% Similarity=0.287 Sum_probs=148.8
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEE-EEecCCCCCeEEEEEcC--CCCEEEEEeCCCcE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF-QLIPASTSKVESCHFSP--DGKLLATGGHDKKA 579 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg~I 579 (768)
...+.++++||.|-.+.+|+... .+.+ ..-.+|...|.|+.|-| +.+.+++|..|..|
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~-------------------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFE-------------------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cCCCCEEeecCCcceEEeecchh-------------------cceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 44677999999999999994421 1222 23358999999999999 45689999999999
Q ss_pred EEEECCC----------CeEEEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCeeEEE---------eecC
Q 004207 580 VLWCTES----------FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRT---------FTGH 639 (768)
Q Consensus 580 ~VWdl~t----------~~~~~tl~~h~~~V~sl~fspdg-~~LaTgs~DgtIrVWDl~t~~~~~~~---------~~~h 639 (768)
+|||+.. .+....+..|...|..|+-.|++ ..|.+++.||+|+-||++....+... +...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999984 23345567899999999999987 78999999999999999875432211 1222
Q ss_pred CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC--------Ce----------eEEEEec-----C--------CCeeEE
Q 004207 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--------GS----------CAGVFKC-----Q--------SGATQM 688 (768)
Q Consensus 640 ~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s--------g~----------~i~~~~~-----~--------~~i~sl 688 (768)
--...|++.+|...++|++|+.|-.+++||.+. +. |+..+.. . ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 245789999999999999999999999999541 11 2333321 0 114567
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEe
Q 004207 689 RFQPRLGRILAAAIENYISILDVETQVCR 717 (768)
Q Consensus 689 ~fsp~~~~llags~Dg~I~IwD~~t~~~~ 717 (768)
.|+|+|..|++.-....|++||+...+..
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 89999999999888889999999876543
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.50 E-value=2.7e-14 Score=161.44 Aligned_cols=234 Identities=18% Similarity=0.259 Sum_probs=168.2
Q ss_pred ccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 574 (768)
Q Consensus 495 ~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs 574 (768)
-++.+..++-.+++|.+|+.|..|++|...+. .+....++|.+.|+.++.+....++++++
T Consensus 191 naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS 251 (1113)
T KOG0644|consen 191 NAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAAS 251 (1113)
T ss_pred hheeeeeeccccceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcc
Confidence 34556778889999999999999999953322 23456689999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCC-e-----------eEEE------
Q 004207 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD-Y-----------SLRT------ 635 (768)
Q Consensus 575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~-t~~-~-----------~~~~------ 635 (768)
.|..|+||.+.++.++..+.+|++.|++|+|+|-. +.+.||++++||.+ ... . .+..
T Consensus 252 ~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 252 NDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN 327 (1113)
T ss_pred cCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccc
Confidence 99999999999999999999999999999999964 77899999999987 110 0 0000
Q ss_pred ----eec------CCCCeEEEEEeC----------CCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCC
Q 004207 636 ----FTG------HSTTVMSLDFHP----------SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL 694 (768)
Q Consensus 636 ----~~~------h~~~V~slafsp----------~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~ 694 (768)
..+ ..-.+.+++|.. +...+.+++-.+..+++|++-+|...+.+.. ...+..+.++|..
T Consensus 328 ~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred ccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 000 001122222222 2222333444566688888888887777665 4557888999987
Q ss_pred CEE-EEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 695 GRI-LAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 695 ~~l-lags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
..+ +.++.||.+.|||+-.+..+ +.|+ .+| ..+...+|+++|..++....-|.+.|.
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pi------k~y~---------~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPI------KHYF---------IGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcc------eeee---------ccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 664 46789999999998776543 2222 233 445667888888888777777777664
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=3.3e-12 Score=134.18 Aligned_cols=208 Identities=16% Similarity=0.189 Sum_probs=149.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc---CCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCC
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPD 630 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~---h~~~V~sl~fspdg~~LaTgs--~DgtIrVWDl~t~~ 630 (768)
.+|.+|.++ .+.|+++-.+ .|+|||+++.+.+.++.. +...+.++.+++.+.+|+.-+ ..|.|.|||+.+-.
T Consensus 88 t~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~ 164 (391)
T KOG2110|consen 88 TSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ 164 (391)
T ss_pred CceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence 457778774 5567776655 499999999999988753 444566666676677887643 36899999998765
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc-EEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeE
Q 004207 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYI 706 (768)
Q Consensus 631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~-I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I 706 (768)
. +..+..|++.+.|++|+++|. ++||+++.|+ ||||++.+|..+..|.. ...|.+++|+|++.+|.+.+..++|
T Consensus 165 ~-v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 165 P-VNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred e-eeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence 4 788889999999999999987 8889998886 78999999999999985 3447899999999999999999999
Q ss_pred EEEECCCceEeeecc----------------------eeEEeecCCCceEEeccCCC--CeeEEEEeCCCCEEEEEECCC
Q 004207 707 SILDVETQVCRLKLQ----------------------TLELWNMTENKTLTLSAHDK--LVSSLAASTVNGMVASASHDK 762 (768)
Q Consensus 707 ~IwD~~t~~~~~~~~----------------------~I~iwd~~~~~~~~l~~H~~--~I~sla~spdg~~LaSgs~DG 762 (768)
+||.++......... -..+||....-........+ .+..+.-.+...++..++.||
T Consensus 243 HiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG 322 (391)
T KOG2110|consen 243 HIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDG 322 (391)
T ss_pred EEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCC
Confidence 999987643111000 01123322211111111111 344444345678999999999
Q ss_pred cEEEeC
Q 004207 763 CVKIWK 768 (768)
Q Consensus 763 ~V~IWD 768 (768)
.++.|.
T Consensus 323 ~~y~y~ 328 (391)
T KOG2110|consen 323 HLYSYR 328 (391)
T ss_pred eEEEEE
Confidence 998873
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.2e-13 Score=151.28 Aligned_cols=213 Identities=15% Similarity=0.213 Sum_probs=150.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t--------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~ 617 (768)
..-.++..|.+.|..+.|++....|++|+.||+|++|++.. .+.+.++.+|.++|.|+++.+++.++++|+.
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 33347889999999999999999999999999999999832 3577899999999999999999999999999
Q ss_pred CCcEEEEECCC---------CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe---cCCCe
Q 004207 618 DRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGA 685 (768)
Q Consensus 618 DgtIrVWDl~t---------~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~---~~~~i 685 (768)
||+|+.|++.. .......+.||.+.|+.+++++.... |++|+.||+|+.|+...... .+|. .++..
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 99999996531 12334678899999999999998664 55999999999999876555 3332 23445
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 004207 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 765 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~ 765 (768)
.++.+......+.. .+..+..+++.+.+.... +.++.... .....-...|.-+.++|...+.+++..|+.|+
T Consensus 443 lsvd~~ss~~a~~~--~s~~~~~~~~~~~ev~s~---~~~~~s~~---~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSL--ASFRFGYTSIDDMEVVSD---LLIFESSA---SPGPRRYPQINKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred ceEeeccchhHhhh--hhcccccccchhhhhhhh---eeeccccC---CCcccccCccceEEecCCCCeeEecccCCcee
Confidence 55665443211222 222233333332222211 11211110 01111224577888999999999999999999
Q ss_pred EeC
Q 004207 766 IWK 768 (768)
Q Consensus 766 IWD 768 (768)
++|
T Consensus 515 ~~d 517 (577)
T KOG0642|consen 515 FFD 517 (577)
T ss_pred ccc
Confidence 986
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.50 E-value=5.3e-13 Score=136.01 Aligned_cols=189 Identities=14% Similarity=0.225 Sum_probs=147.8
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWC 583 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWd 583 (768)
..++|.+.|.|.+..+|....+ ........+-+|..+|+.|+|..++. .||+++.||.|++||
T Consensus 162 dp~~igtSSiDTTCTiWdie~~----------------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETG----------------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD 225 (364)
T ss_pred CcceeEeecccCeEEEEEEeec----------------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence 4578899999999999965443 11222345679999999999998554 799999999999999
Q ss_pred CCCCeEEEEecc---CCCCEEEEEEcC-CCCEEEEEeCCC-cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 584 TESFTVKSTLEE---HTQWITDVRFSP-SLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 584 l~t~~~~~tl~~---h~~~V~sl~fsp-dg~~LaTgs~Dg-tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
++..+....+.. ...+...++|++ |-+++||-..|. .|.|.|++.+..++..+.+|.+.|..|+|.|.....+|+
T Consensus 226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence 988665544422 245788899988 467888866654 799999999988899999999999999999999999999
Q ss_pred EeCCCcEEEEECCCC------eeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207 659 CDNNSEIRYWSINNG------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709 (768)
Q Consensus 659 gs~Dg~I~iWDl~sg------~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~Iw 709 (768)
|+.|..+.+||+... .++..+...+.|..+.|++...-.++.+.++++.|.
T Consensus 306 aGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred cCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 999999999999752 233344457889999999766556666666665544
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.48 E-value=1.7e-12 Score=134.08 Aligned_cols=192 Identities=19% Similarity=0.242 Sum_probs=151.5
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT- 584 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl- 584 (768)
..-+|++.....|.+|.... ...++..+++..|...|++|+|+|..+.|++|+.|..-+||..
T Consensus 22 rt~iAv~~~~~evhiy~~~~----------------~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 22 RTQIAVSPNNHEVHIYSMLG----------------ADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred CceEEeccCCceEEEEEecC----------------CCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 34677777777888883321 1225678889999999999999999999999999999999987
Q ss_pred CCC--eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe---eEEEeecCCCCeEEEEEeCCCCeEEEEE
Q 004207 585 ESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (768)
Q Consensus 585 ~t~--~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g~~lLaSg 659 (768)
+.+ ++...+..++..+++|.|+|.++.||+|+.-..|.||=++.... ...+-+.+.+.|++++|||++ .++++|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ceeccc
Confidence 333 45556677899999999999999999999999999998875331 223445567889999999994 588899
Q ss_pred eCCCcEEEEEC-----CC-------------CeeEEEE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207 660 DNNSEIRYWSI-----NN-------------GSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 660 s~Dg~I~iWDl-----~s-------------g~~i~~~-~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~ 714 (768)
+.|+.++||.. +. |..+..+ ...+-+..+.|+|.|..|+..+.|..|.+-|....
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99999999964 11 1223333 23566899999999999999999999999887665
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.47 E-value=2.2e-12 Score=151.57 Aligned_cols=223 Identities=18% Similarity=0.237 Sum_probs=162.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeC
Q 004207 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t-------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~ 617 (768)
..+..+..|...|..++.+++. .+|+||+.||+|+||++.. .+...++......+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4577788999999999998855 8999999999999999764 2333445445678999999999999999999
Q ss_pred CCcEEEEECCCCCee------EEEeecC-CCCeEEE-EEeCC-CCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCe
Q 004207 618 DRTVRVWDTENPDYS------LRTFTGH-STTVMSL-DFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGA 685 (768)
Q Consensus 618 DgtIrVWDl~t~~~~------~~~~~~h-~~~V~sl-afsp~-g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i 685 (768)
||.|++.+++..... .+....+ .+.+.++ +|... +..+++.+...+.|..||+++......++. ++.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999999999862211 1122222 2333333 34333 234777888889999999998776666554 6889
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------------------eeEEeecCCCceE
Q 004207 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------------------------------TLELWNMTENKTL 734 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~-------------------------------~I~iwd~~~~~~~ 734 (768)
++++.+|.+.+++.|++.|.+.+||++-...+.... .+.+|++.++...
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 999999999999999999999999998765544332 5778888877543
Q ss_pred Ee-c-c------------------CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 735 TL-S-A------------------HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 735 ~l-~-~------------------H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.. . . +.-....+++...+.++++|+.|..|+.||
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 21 1 1 111222344444567999999999999998
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=4.3e-12 Score=146.94 Aligned_cols=238 Identities=15% Similarity=0.193 Sum_probs=162.3
Q ss_pred ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC--CCCEEEEEeCCC
Q 004207 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDK 577 (768)
Q Consensus 500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp--dg~~LaSgs~Dg 577 (768)
..+++-+..+++......|++|+..+. ..+..+..-......|+.+.+-. |..++++|+.||
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~----------------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKG----------------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccC----------------ceeccccCCCCCCCccceeeeecccchhheeeeccCc
Confidence 334555666666665667777755433 22222222223446788888866 556899999999
Q ss_pred cEEEEEC-----CCCeEEEEecc-------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE
Q 004207 578 KAVLWCT-----ESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (768)
Q Consensus 578 ~I~VWdl-----~t~~~~~tl~~-------h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s 645 (768)
.|+||+- +..+.+..+.+ ..+.-.-+.|.....+|++++.-..|||||.+..........+....|++
T Consensus 1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred eEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcccee
Confidence 9999963 22344433322 11112345677766677777778899999999766544455556677888
Q ss_pred EEEeCCCCeEEEEEeCCCcEEEEECCCCe---eEEEEec---CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEee
Q 004207 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKC---QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRL 718 (768)
Q Consensus 646 lafsp~g~~lLaSgs~Dg~I~iWDl~sg~---~i~~~~~---~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~ 718 (768)
+.-+-....++++|..||.|++||.|... .+...+. ..+|..+.+.+.|- .|++|+.||.|.+||++......
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence 88766666799999999999999998643 3444433 23388899988654 49999999999999999852221
Q ss_pred ecceeEEeecCCCceEEeccCC--C-CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 719 KLQTLELWNMTENKTLTLSAHD--K-LVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 719 ~~~~I~iwd~~~~~~~~l~~H~--~-~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+ ++..|. + ..+++..+++...+|||+. +.|+||+
T Consensus 1294 ~~--------------~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1294 FL--------------TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred cc--------------eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 11 122222 2 4899999999999999999 9999996
No 199
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.8e-11 Score=138.95 Aligned_cols=193 Identities=17% Similarity=0.137 Sum_probs=130.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEC
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDT 626 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl 626 (768)
+..+...|.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+||++.|+ +.+.++...||.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 34667789999999999998877643 359999999887653 333345567899999998876 5677887677655
Q ss_pred CCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEEC--CCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 004207 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (768)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl--~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg 704 (768)
+........+..+...+.+..|+|+|+.+++++..++...+|.+ .++................|+|++.+|+.++.++
T Consensus 270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence 42222245555566667788999999988877766666666654 4454433322233345688999999988777654
Q ss_pred ---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207 705 ---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 762 (768)
Q Consensus 705 ---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG 762 (768)
.|.+||+.++. ...+..+ .....+.|+|++++|+.++.++
T Consensus 350 g~~~I~v~d~~~g~-----------------~~~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 350 GAFKLYVQDLATGQ-----------------VTALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CcEEEEEEECCCCC-----------------eEEccCC-CCccCceECCCCCEEEEEEecC
Confidence 46666665543 2222211 2345679999999888777544
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=7.4e-13 Score=141.23 Aligned_cols=193 Identities=18% Similarity=0.190 Sum_probs=146.5
Q ss_pred ccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 004207 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (768)
Q Consensus 500 ~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I 579 (768)
.++...++.+++|..||.+|+|..+.. ..+.....|.+.|.+++|+|||++|++.+.| ..
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~-------------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~ 209 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSM-------------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SA 209 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcc-------------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ce
Confidence 344566789999999999999965433 1234456889999999999999999999999 89
Q ss_pred EEEECCCCeEEEEec--cCCCCEEEEEEcCCC---C--EEEEEeCCCcEEEEECCCCCe----eEEEeecCCCCeEEEEE
Q 004207 580 VLWCTESFTVKSTLE--EHTQWITDVRFSPSL---S--RLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDF 648 (768)
Q Consensus 580 ~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg---~--~LaTgs~DgtIrVWDl~t~~~----~~~~~~~h~~~V~slaf 648 (768)
+||++.++.++.... .....+..++|+.|+ . +++....-+.|+.||+..... ..+........|++++.
T Consensus 210 ~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 210 RVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred EEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 999999997766554 233457788898876 2 233334456777777653222 12222223457999999
Q ss_pred eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 649 sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
+++|+ +++.|+.||.|-|++..+-+++..++. ...|+.+.|+|+.++++..+.|..+.+..+.-
T Consensus 290 S~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 290 SDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99987 777999999999999998888887764 45699999999999999999999888876644
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.44 E-value=2.6e-12 Score=146.94 Aligned_cols=199 Identities=18% Similarity=0.246 Sum_probs=147.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EE----EeccCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEE
Q 004207 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWD 625 (768)
Q Consensus 555 ~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~--~~----tl~~h~~~V~sl~fspdg--~~LaTgs~DgtIrVWD 625 (768)
...|+|+.|+| +..+||.|+.+|.|.+||+..+.. .. ....|..+|+.+.|..+. .-|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 45699999999 667889999999999999987654 22 224688999999997653 4599999999999999
Q ss_pred CCCCCeeEE-----Eee------cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEE---CCCCe-----eE-EEEecCCCe
Q 004207 626 TENPDYSLR-----TFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNGS-----CA-GVFKCQSGA 685 (768)
Q Consensus 626 l~t~~~~~~-----~~~------~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWD---l~sg~-----~i-~~~~~~~~i 685 (768)
++.-..+.. ... .-...+++++|.+.....|++|+++|.|..-+ .+... .. ....+.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 875332111 111 12346899999999888999999999987733 22222 11 122246779
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC-CEEEEEECCCcE
Q 004207 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCV 764 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg-~~LaSgs~DG~V 764 (768)
.++.++|-+..++..+.|.+|+||..... ...++.+..+...|++++|||.. ..|+++..||.|
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~---------------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVI---------------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCC---------------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 99999999888888777999999986521 11222344566779999999987 478888889999
Q ss_pred EEeC
Q 004207 765 KIWK 768 (768)
Q Consensus 765 ~IWD 768 (768)
.|||
T Consensus 467 ~iWD 470 (555)
T KOG1587|consen 467 DIWD 470 (555)
T ss_pred ehhh
Confidence 9998
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.44 E-value=3.9e-13 Score=135.46 Aligned_cols=204 Identities=19% Similarity=0.255 Sum_probs=144.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
++..+++|.+.|+|+.|-.+++ |.+|...|.|++|++.+.+.+..+. .|...|+.+.--|+ ..|.|-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 3556779999999999987665 8899999999999999998888887 56778998888887 5688889999999999
Q ss_pred CCCCCeeE-------------EEe---------------------------------------ecCCCCeEEEEEeC--C
Q 004207 626 TENPDYSL-------------RTF---------------------------------------TGHSTTVMSLDFHP--S 651 (768)
Q Consensus 626 l~t~~~~~-------------~~~---------------------------------------~~h~~~V~slafsp--~ 651 (768)
+.-..... ..+ .+..+.++|..|.- .
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 87422100 000 01123455555322 2
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeEEEEe-----------cCCCeeE---------------------------------
Q 004207 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFK-----------CQSGATQ--------------------------------- 687 (768)
Q Consensus 652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-----------~~~~i~s--------------------------------- 687 (768)
...++++|.++|.|.+||+.++..+-.++ +..+|.+
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 34567788899999999998863222111 1223333
Q ss_pred -------------EEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCE
Q 004207 688 -------------MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGM 754 (768)
Q Consensus 688 -------------l~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~ 754 (768)
+.+-||++.+++++.|+.|+||..++.... ..+.-|.+.|.+++|+|+..+
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL----------------AVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL----------------AVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch----------------hhhhhhhcceeEEEeCCCCch
Confidence 444455555556666666666655554332 244579999999999999999
Q ss_pred EEEEECCCcEEEeC
Q 004207 755 VASASHDKCVKIWK 768 (768)
Q Consensus 755 LaSgs~DG~V~IWD 768 (768)
+|.+|.|+.|.+|+
T Consensus 308 mAaaskD~rISLWk 321 (323)
T KOG0322|consen 308 MAAASKDARISLWK 321 (323)
T ss_pred hhhccCCceEEeee
Confidence 99999999999996
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.8e-11 Score=140.62 Aligned_cols=213 Identities=18% Similarity=0.282 Sum_probs=162.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t----~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
..|...++|.++||+++++|+|..||.|.||.--. ......+.=|...|.+++|+++|.+|++|+..|.+.+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 46777799999999999999999999999996322 12234566688899999999999999999999999999999
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------------CCCeeEEEEecCCC
Q 004207 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG 695 (768)
Q Consensus 628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------------~~~i~sl~fsp~~~ 695 (768)
+++ ...+..-.++|..+.++|+++ +++.+..|..|.+....+.....++.+ .+-.+.++++|..+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 977 455666678999999999987 444566699999988765544443332 12356789999888
Q ss_pred EEEEEEcCCeEEEEECCCceEeeecc----------------------------------------------eeEEeecC
Q 004207 696 RILAAAIENYISILDVETQVCRLKLQ----------------------------------------------TLELWNMT 729 (768)
Q Consensus 696 ~llags~Dg~I~IwD~~t~~~~~~~~----------------------------------------------~I~iwd~~ 729 (768)
.++..+..+.|-+||+.+...+..+. .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 88899999999999998765554433 56777654
Q ss_pred CCceE------EeccCCCCeeEEEEeC-CCC-EEEEEECCCcEEEe
Q 004207 730 ENKTL------TLSAHDKLVSSLAAST-VNG-MVASASHDKCVKIW 767 (768)
Q Consensus 730 ~~~~~------~l~~H~~~I~sla~sp-dg~-~LaSgs~DG~V~IW 767 (768)
....- ....|...+...++.+ ... .++++|.||.++||
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW 484 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence 43211 2347887766666654 333 89999999999999
No 204
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=4e-11 Score=136.36 Aligned_cols=192 Identities=13% Similarity=0.111 Sum_probs=135.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCc--EE
Q 004207 549 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR 622 (768)
Q Consensus 549 ~~l~~H~~~I~sl~fSpdg~~LaSgs~---Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~Dgt--Ir 622 (768)
+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 344577888999999999998887754 467999999887654 3445566788999999998765 5556665 77
Q ss_pred EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE
Q 004207 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag 700 (768)
+||++++. ...+..+.....+..|+|+|+.++++...+| .|++||+..+...........+....|+|++.+|+..
T Consensus 274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 77888765 3455656666788999999998877665544 6888898876655544444556778999999998887
Q ss_pred EcCC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 701 AIEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 701 s~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
..++ .|.+||+.+.. ...+. +...+..+.|+|||++|+..+.+
T Consensus 352 ~~~~~~~~i~~~d~~~~~-----------------~~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSG-----------------ERILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred EcCCCceEEEEEECCCCc-----------------eEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 6532 45666654322 11111 12236678999999988776543
No 205
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.42 E-value=8.7e-14 Score=140.37 Aligned_cols=76 Identities=33% Similarity=0.768 Sum_probs=63.0
Q ss_pred CcccHHhhHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCcccCCCCCcchhhhHHHHHHhhhhccc----ccchhhhhhh
Q 004207 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNE----KHSESAASYI 79 (768)
Q Consensus 4 ~~~~~~~~L~~yiydyl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~gfL~eww~~FWdlf~A~~~~----~~s~~a~qyi 79 (768)
++-.|++.|..||||||++-|..++|++|+.|..+..+ +.+-.+.+||.+|||+|||+|+|...+ .|+..+..+-
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 56679999999999999999999999999999886555 667778899999999999999995444 4555555554
Q ss_pred H
Q 004207 80 E 80 (768)
Q Consensus 80 q 80 (768)
.
T Consensus 91 d 91 (354)
T KOG4594|consen 91 D 91 (354)
T ss_pred h
Confidence 4
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.42 E-value=1.5e-11 Score=134.15 Aligned_cols=168 Identities=17% Similarity=0.251 Sum_probs=121.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEe----ccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC---------
Q 004207 565 PDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--------- 630 (768)
Q Consensus 565 pdg~~LaSgs~Dg~I~VWdl~t~~~~~tl----~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~--------- 630 (768)
+++--|++|-..|.|.+.|....+..+.+ .-....|+||.|-|. ...|+++-.+|.+++||.+-..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 34556788888889998886553222211 113467999999985 4567777889999999864110
Q ss_pred ------e------------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEe
Q 004207 631 ------Y------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQ 691 (768)
Q Consensus 631 ------~------------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fs 691 (768)
. ++..+.-..+.|..++|+|||. .||+.+.||.+||||..+.+++..++. -+...|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 1 1112222345788999999987 666888899999999998877766654 5779999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe
Q 004207 692 PRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS 749 (768)
Q Consensus 692 p~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s 749 (768)
||+++|++|+.|.-|.||.+...+.+.+-. +|++.|+.|+|.
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGq----------------GHkSWVs~VaFD 383 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQ----------------GHKSWVSVVAFD 383 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEecc----------------ccccceeeEeec
Confidence 999999999999999999998876655433 566666666665
No 207
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.4e-11 Score=138.09 Aligned_cols=191 Identities=21% Similarity=0.185 Sum_probs=132.1
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCC--cEEE
Q 004207 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV 623 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~Dg--tIrV 623 (768)
.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+.|+ +.+.+| .|++
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 344667789999999999998887643 469999998876543 333444556889999998775 455665 5999
Q ss_pred EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE
Q 004207 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags 701 (768)
||+.++. +..+..+......++|+|+|+.++++...++. |+++|+.+++.............++|+|++.+|+..+
T Consensus 277 ~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 277 MDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEE
Confidence 9998765 34455565566789999999988877766665 6667777766544333334455789999999988776
Q ss_pred cCC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 702 IEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 702 ~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
.++ .|.+||+.++.. ..+. +........|+|+|++|+..+.+
T Consensus 355 ~~~~~~~I~v~d~~~g~~-----------------~~Lt-~~~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSV-----------------RTLT-PGSLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CCCCceeEEEEECCCCCe-----------------EECC-CCCCCCCceECCCCCEEEEEEec
Confidence 543 466777655432 2221 22234467899999987776653
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.4e-11 Score=136.62 Aligned_cols=191 Identities=19% Similarity=0.151 Sum_probs=130.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCC--cEEEEE
Q 004207 552 PASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVWD 625 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~~LaSgs~---Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~Dg--tIrVWD 625 (768)
..+...+.+.+|||||+.|+..+. +..|++|++.+++.... ....+.+.+++|+|||+.|+.. +.+| .|++||
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 346678999999999998886542 35799999988764432 2233345578999999988765 4455 588999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D 703 (768)
++++.. ..+..+...+....|+|+|+.++++...++. |+++|+.++................|+|++.+++..+.+
T Consensus 274 ~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 274 LASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred CCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 987653 3444455578899999999988777765555 444577766554333333445678999999998877654
Q ss_pred C---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207 704 N---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 763 (768)
Q Consensus 704 g---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~ 763 (768)
+ .|.+||+.++. ...+... .......|+|||.+|+.++.|+.
T Consensus 352 ~g~~~I~~~dl~~g~-----------------~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 352 GGQQHIAKQDLATGG-----------------VQVLTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred CCCceEEEEECCCCC-----------------eEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 3 35566665543 2222211 12346789999999999988765
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.4e-11 Score=135.22 Aligned_cols=212 Identities=17% Similarity=0.273 Sum_probs=158.6
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEE----------------------------eccCCC-----
Q 004207 553 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKST----------------------------LEEHTQ----- 598 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~-LaSgs~Dg~I~VWdl~t~~~~~t----------------------------l~~h~~----- 598 (768)
.|....+.|..+|||+| +|+|...-.|+|||+....+... +.-|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 56677889999999997 56777788999999875432211 011110
Q ss_pred ------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC
Q 004207 599 ------WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (768)
Q Consensus 599 ------~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s 672 (768)
.-.+++++.-..-|++++....|+-++++.|.. +..+....+.+++|..++.. .||++|+.+|.|.+||.++
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf-L~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF-LNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEcccccc-ccccccccccceeeeecCcc-ceEEecccCceEEEecchh
Confidence 012333332222355555666788889998876 67777677899999999884 4888999999999999998
Q ss_pred CeeEEEEecCCC------------eeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------
Q 004207 673 GSCAGVFKCQSG------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------------- 721 (768)
Q Consensus 673 g~~i~~~~~~~~------------i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------------- 721 (768)
...+..+..... |+++.|+.+|-.+.+|+.+|.|.|||+++........
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 877777664332 8999999998889999999999999998864432211
Q ss_pred --------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 722 --------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 722 --------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
.++|||..+++..........|+.+|+-|++.+|+++-.++.+..
T Consensus 287 ~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 287 KVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred eEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence 678999999998877777777999999999999999988876654
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=3e-11 Score=138.82 Aligned_cols=258 Identities=16% Similarity=0.248 Sum_probs=172.8
Q ss_pred CcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 004207 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (768)
Q Consensus 493 ~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaS 572 (768)
+.+.+...++++.++++|+|..||.|.+|....-. ++. ...+.+.=|.++|.+++|+++|.+|++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~------------~~~---~t~t~lHWH~~~V~~L~fS~~G~~LlS 268 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS------------DDS---ETCTLLHWHHDEVNSLSFSSDGAYLLS 268 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccc------------ccc---ccceEEEecccccceeEEecCCceEee
Confidence 34444667889999999999999999999432210 011 124566789999999999999999999
Q ss_pred EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee--EEEe--------ecCCCC
Q 004207 573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTF--------TGHSTT 642 (768)
Q Consensus 573 gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~--~~~~--------~~h~~~ 642 (768)
|+..|.+.+|.+.+++ ...+..-.++|..+.++||+.+.+....|..|.+....+.... +..+ ....+-
T Consensus 269 GG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 269 GGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred cccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence 9999999999999988 4455566789999999999999999999999999987543321 1111 112445
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec------------CCCeeEEEEecCCCEEEEEEc--------
Q 004207 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGRILAAAI-------- 702 (768)
Q Consensus 643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------------~~~i~sl~fsp~~~~llags~-------- 702 (768)
.+.++++|.-+ .++-++..|.|.+||+-+.+.+..+.. ..+++.++.+-.|.++++.-.
T Consensus 348 ~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~ 426 (792)
T KOG1963|consen 348 TTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFF 426 (792)
T ss_pred ceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhcc
Confidence 67788888533 455677789999999877665544431 112444555555555544321
Q ss_pred C--CeEEEEECCCceEeee--------------------------------cceeEEeecCCCc----------eEE-ec
Q 004207 703 E--NYISILDVETQVCRLK--------------------------------LQTLELWNMTENK----------TLT-LS 737 (768)
Q Consensus 703 D--g~I~IwD~~t~~~~~~--------------------------------~~~I~iwd~~~~~----------~~~-l~ 737 (768)
| ..+++|-......... ...+++|-+...+ +.. -.
T Consensus 427 ~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 427 DGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred CceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec
Confidence 1 2244554322111000 0145666552211 111 11
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 738 AHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 738 ~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
-|...+++++|+.||..| +.+.|++|.|||
T Consensus 507 y~k~~i~a~~fs~dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 507 YHKTPITALCFSQDGSLL-AVSFDDTITIWD 536 (792)
T ss_pred cccCcccchhhcCCCcEE-EEecCCEEEEec
Confidence 378899999999999655 567788999997
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=3.4e-11 Score=126.17 Aligned_cols=235 Identities=14% Similarity=0.125 Sum_probs=150.2
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWC 583 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpd-g~~LaSgs~Dg~I~VWd 583 (768)
|-..++++..|..|++|....... ...-......|+|++|-|. +..|++|+.. -|.||.
T Consensus 109 H~~~fava~nddvVriy~ksst~p-------------------t~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~ 168 (445)
T KOG2139|consen 109 HIIAFAVATNDDVVRIYDKSSTCP-------------------TKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWS 168 (445)
T ss_pred hhhhhhhhccCcEEEEeccCCCCC-------------------ceecchhhcceeEEEeccCCcceeeeeecc-eeEEEE
Confidence 334567888999999994432110 0011123456999999994 4567777765 599997
Q ss_pred CCCC----eE----------EEEeccCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCeeEEEeecCCCCeEEEEE
Q 004207 584 TESF----TV----------KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (768)
Q Consensus 584 l~t~----~~----------~~tl~~h~~~V~sl~fspdg~~LaTgs~D-gtIrVWDl~t~~~~~~~~~~h~~~V~slaf 648 (768)
.+.- +. +....+| .+|+++.|.+||..+++++.+ ..|.|||.+++.. +.......+.++-+.|
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~~~glgg~slLkw 246 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-IPLIPKGLGGFSLLKW 246 (445)
T ss_pred cCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-ccccccCCCceeeEEE
Confidence 6421 11 1223455 579999999999999999875 5899999998775 3322234567889999
Q ss_pred eCCCCeEEEEEeCCCcEEEEEC-CCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCceEeee----c-c
Q 004207 649 HPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLK----L-Q 721 (768)
Q Consensus 649 sp~g~~lLaSgs~Dg~I~iWDl-~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~----~-~ 721 (768)
+||+..+| ++..|+..++|.. ++..+.+-.-..+.|...+|+|+|.+|+.++. +-.|+-........... . .
T Consensus 247 SPdgd~lf-aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~ 325 (445)
T KOG2139|consen 247 SPDGDVLF-AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKR 325 (445)
T ss_pred cCCCCEEE-EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCccccee
Confidence 99998776 5666999999954 44555555556678999999999998766554 34343332222111111 0 1
Q ss_pred eeEEeecCCCceEEe-ccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207 722 TLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDK 762 (768)
Q Consensus 722 ~I~iwd~~~~~~~~l-~~H~~~I~sla~spdg~~LaSgs~DG 762 (768)
.+-+-|+..-...+- .-..+.+.+++|.|.|.+||+.-..+
T Consensus 326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 112223222111110 01246789999999999999876544
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.39 E-value=3.6e-11 Score=121.68 Aligned_cols=150 Identities=19% Similarity=0.302 Sum_probs=106.6
Q ss_pred EEEEEcCCCCEEEEEeC---C-------CcEEEEECCC-CeEEEEecc-CCCCEEEEEEcCCCCEEEEE--eCCCcEEEE
Q 004207 559 ESCHFSPDGKLLATGGH---D-------KKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPSLSRLATS--SADRTVRVW 624 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~---D-------g~I~VWdl~t-~~~~~tl~~-h~~~V~sl~fspdg~~LaTg--s~DgtIrVW 624 (768)
..+.|+++|++|++-.. | +...||.++. ......+.. ..++|.+++|+|+++.||++ ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35789999987664332 1 2345555422 223333332 34579999999999987655 356799999
Q ss_pred ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe--CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs--~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~ 702 (768)
|++ .+. +..+ +...+..|.|+|+|+.++++|. ..|.|.+||+++.+++..+.+ ..++.++|+|+|.++++++.
T Consensus 89 d~~-~~~-i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKK-IFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccE-eEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-CcEEEEEEcCCCCEEEEEEe
Confidence 997 232 4444 3467889999999997765542 357899999999888887765 45789999999999998875
Q ss_pred ------CCeEEEEECCC
Q 004207 703 ------ENYISILDVET 713 (768)
Q Consensus 703 ------Dg~I~IwD~~t 713 (768)
|+.++||+...
T Consensus 164 ~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ccceeccccEEEEEecC
Confidence 67777777653
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=4.4e-11 Score=135.83 Aligned_cols=173 Identities=17% Similarity=0.115 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEE--ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCeeE
Q 004207 558 VESCHFSPDGKLLATGG-HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL 633 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs-~Dg~I~VW--dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~~~ 633 (768)
..+++|+|||+.|+.++ .+|.+.|| |+.+++. ..+..+...+.++.|+||++.|+.++ .++.+.||+++......
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 34689999999888764 67765555 6666554 45556777788999999999776555 57888888875433223
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
..+ .+.. .++.|+|+|+.+++++. + .|.+||+.++........ .....+.|+|++..|++++.++.+.+|++.
T Consensus 329 ~~l-~~~~--~~~~~SpDG~~ia~~~~-~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~- 401 (429)
T PRK01742 329 SLV-GGRG--YSAQISADGKTLVMING-D-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLV- 401 (429)
T ss_pred EEe-cCCC--CCccCCCCCCEEEEEcC-C-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEE-
Confidence 333 3433 46789999987665544 4 466699998876543322 234567899999999999988887776542
Q ss_pred ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC
Q 004207 714 QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV 751 (768)
Q Consensus 714 ~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd 751 (768)
+........+..|.+.+..++|+|-
T Consensus 402 -------------~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 -------------SADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -------------ECCCCceEEccCCCCCCCCcccCCC
Confidence 2222333455578888899999974
No 214
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=1.1e-10 Score=122.87 Aligned_cols=191 Identities=16% Similarity=0.174 Sum_probs=141.6
Q ss_pred CeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207 557 KVESCHFSPDGKLLATGGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~D--g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~ 634 (768)
.|.-+-|+ ..++|..+.+ +.+++++.+....+..+. ....|.+|+++.+ +|+++-.+. |+|||+++.+. +.
T Consensus 48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~Mkl-Lh 120 (391)
T KOG2110|consen 48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKL-LH 120 (391)
T ss_pred EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--eEEEEEccc-EEEEeccccee-eh
Confidence 35556665 4566655544 359999998888777765 3467999999864 676665555 99999998775 44
Q ss_pred Eee---cCCCCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCe-EEE
Q 004207 635 TFT---GHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY-ISI 708 (768)
Q Consensus 635 ~~~---~h~~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~-I~I 708 (768)
++. .+...+.++.+++.+.++.+-++ ..|.|.+||+.+-+.+..+.. .+.+.+++|+++|..|++++..|+ |+|
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 332 35555767777766555554443 468999999999888888775 567999999999999999999887 688
Q ss_pred EECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 709 LDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 709 wD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|.+.++.....+ +.|.. ...|.+++|+|++.+|++.|..++|+||+
T Consensus 201 f~v~~G~kl~eF--------RRG~~------~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 201 FSVPEGQKLYEF--------RRGTY------PVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred EEcCCccEeeee--------eCCce------eeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 888877654333 33322 23489999999999999999999999985
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.38 E-value=5.1e-13 Score=143.34 Aligned_cols=189 Identities=19% Similarity=0.286 Sum_probs=161.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~ 637 (768)
-+.+.|+.+|++|+.|+..|.|-.+|..++++...+.. ...|.++.|-.+..+||++ ....++|||-...+ +..+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtE--lHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTE--LHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCCcE--Eeehh
Confidence 46688999999999999999999999999999888864 4569999999888887776 66789999976433 67777
Q ss_pred cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (768)
Q Consensus 638 ~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~ 716 (768)
.| ..|..+.|.|. .++|++++..|.++.-|+.+|+.+..+.. .+.+..++-+|....+-.|...|+|.+|.....+.
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 65 46999999998 57888999999999999999999988876 55677888999988888888999999998876544
Q ss_pred eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
. +.+..|.++|.+|++.++|.|+||+|.|..|+|||
T Consensus 286 L----------------vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 286 L----------------VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD 321 (545)
T ss_pred H----------------HHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence 3 24457999999999999999999999999999998
No 216
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.4e-12 Score=140.73 Aligned_cols=222 Identities=21% Similarity=0.322 Sum_probs=172.0
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcCC--CCEEEEEeCCCcEE
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS--LSRLATSSADRTVR 622 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fspd--g~~LaTgs~DgtIr 622 (768)
.....+..|.+.|..|.|+..|..|++|+.|..|.+||...++.+..+ .+|...|....|-|. ...+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 345667899999999999999999999999999999999988777665 578888888889884 56799999999999
Q ss_pred EEECCCCCee--EEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-------------------
Q 004207 623 VWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------------- 681 (768)
Q Consensus 623 VWDl~t~~~~--~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------------------- 681 (768)
+=.+....+. ...+..|.++|..++..|+..+-|.+|+.|+.+.-+|++.+.....+.+
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 9887654432 3456679999999999999999999999999999999885432111100
Q ss_pred ------------------------C-------------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE--
Q 004207 682 ------------------------Q-------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVC-- 716 (768)
Q Consensus 682 ------------------------~-------------------~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~-- 716 (768)
. ..|++++|+.++..++++..|-.|++|....+.-
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 0 0256778887777788888888888874332211
Q ss_pred ----------eee-cc----------------------------eeEEeecCCCceEEe-ccCCCCeeEEEEeCCCCEEE
Q 004207 717 ----------RLK-LQ----------------------------TLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVA 756 (768)
Q Consensus 717 ----------~~~-~~----------------------------~I~iwd~~~~~~~~l-~~H~~~I~sla~spdg~~La 756 (768)
... ++ .|.||+..+++++.+ .+-...|+||.-+|.-.+||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence 000 00 788999888887743 34444899999999999999
Q ss_pred EEECCCcEEEe
Q 004207 757 SASHDKCVKIW 767 (768)
Q Consensus 757 Sgs~DG~V~IW 767 (768)
++|-|..||||
T Consensus 453 sSGid~DVKIW 463 (559)
T KOG1334|consen 453 SSGIDHDVKIW 463 (559)
T ss_pred ccCCccceeee
Confidence 99999999999
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.36 E-value=4.5e-10 Score=124.60 Aligned_cols=239 Identities=17% Similarity=0.148 Sum_probs=151.5
Q ss_pred EEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (768)
Q Consensus 508 ~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~ 587 (768)
++++-..++.|.+.+.. +.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.
T Consensus 8 ~~V~~~~~~~v~viD~~-------------------t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~ 68 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGA-------------------TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG 68 (369)
T ss_dssp EEEEEGGGTEEEEEETT-------------------T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred EEEEecCCCEEEEEECC-------------------CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence 44556667788777332 22334455544443445789999999999999999999999999
Q ss_pred eEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCeeEEEeec-------CCCCeEEEEEeCCCCeEEEEE
Q 004207 588 TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSC 659 (768)
Q Consensus 588 ~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~~~~~~~~-------h~~~V~slafsp~g~~lLaSg 659 (768)
+.+.++.... ...++++++||+++++++ .++.|.|+|.++.+. +..+.. ....+.+|..++....++++-
T Consensus 69 ~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 69 KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 9999997654 468899999999998776 588999999998775 443322 234678888888877666666
Q ss_pred eCCCcEEEEECCCCeeE--EEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecc---------------
Q 004207 660 DNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--------------- 721 (768)
Q Consensus 660 s~Dg~I~iWDl~sg~~i--~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~--------------- 721 (768)
-+.+.|.+.|......+ ..+..........|+|++++++++. .++.|.++|..+.+....+.
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph 226 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH 226 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE
T ss_pred ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccC
Confidence 66688988898765433 4555567788899999999987765 57789999998876554332
Q ss_pred -----------------------eeEEeecCCCceE-EeccCCCCeeEEEEeCCCCEEEEE----ECCCcEEEeC
Q 004207 722 -----------------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK 768 (768)
Q Consensus 722 -----------------------~I~iwd~~~~~~~-~l~~H~~~I~sla~spdg~~LaSg----s~DG~V~IWD 768 (768)
.+.+|+....+.+ ++...... ..+..+|++++|++. ..++.|.|+|
T Consensus 227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 1112333333333 22222333 677889999999988 3457788775
No 218
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.34 E-value=3e-10 Score=128.02 Aligned_cols=191 Identities=18% Similarity=0.163 Sum_probs=133.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEE-EeCCC--cEEEE
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVRVW 624 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaT-gs~Dg--tIrVW 624 (768)
+..+...+.+.+|+|||++|+.+..+ ..|++||+.+++.... ..+...+.+++|+||++.|+. .+.++ .|++|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 34566678999999999999877654 4799999998765433 335566778999999987764 44444 58889
Q ss_pred ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~ 702 (768)
|+.++. ...+..+........|+|+++.++++...++ .|++||+.+++..........+..+.|+|++.+++.++.
T Consensus 264 d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 264 DLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred ECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEc
Confidence 988765 3444445555667899999988877665544 578888887765544444556778899999999988887
Q ss_pred CC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207 703 EN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 762 (768)
Q Consensus 703 Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG 762 (768)
++ .|.+||+.++.. ..+..+ ......+|+|++++|+.++.++
T Consensus 342 ~~~~~~i~~~d~~~~~~-----------------~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 342 EGGGFNIAVMDLDGGGE-----------------RVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred cCCceEEEEEeCCCCCe-----------------EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 65 677777765321 111111 1234568999999888777654
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=6.5e-11 Score=119.78 Aligned_cols=148 Identities=12% Similarity=0.200 Sum_probs=105.8
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCeeEEEeec-CCCCeEEEEEeCCCCeEEEE-EeCCCcEEEE
Q 004207 601 TDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCS-CDNNSEIRYW 668 (768)
Q Consensus 601 ~sl~fspdg~~LaTgs~----------DgtIrVWDl~t~~~~~~~~~~-h~~~V~slafsp~g~~lLaS-gs~Dg~I~iW 668 (768)
..+.|+++|++|++-.. -+...||.++.....+..+.- ..++|.+++|+|++..++++ |..+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999887766433 134556665443333333322 34579999999999876544 5567899999
Q ss_pred ECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeE
Q 004207 669 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSS 745 (768)
Q Consensus 669 Dl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D---g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~s 745 (768)
|++ ++.+..+. ...+..+.|+|+|+++++++.+ |.|.+||+++.+.+.. ..|. .++.
T Consensus 89 d~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-----------------~~~~-~~t~ 148 (194)
T PF08662_consen 89 DVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-----------------FEHS-DATD 148 (194)
T ss_pred cCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-----------------cccC-cEEE
Confidence 997 66666664 4667889999999999998754 5688888876554332 1233 4789
Q ss_pred EEEeCCCCEEEEEEC------CCcEEEeC
Q 004207 746 LAASTVNGMVASASH------DKCVKIWK 768 (768)
Q Consensus 746 la~spdg~~LaSgs~------DG~V~IWD 768 (768)
++|+|+|++|++++. |..++||+
T Consensus 149 ~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 149 VEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 999999999999874 78889985
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.31 E-value=3.1e-11 Score=131.76 Aligned_cols=97 Identities=25% Similarity=0.336 Sum_probs=87.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~ 632 (768)
--.+.|..++|+|||++||+.+.||.++|||..+.+++..++.--+...||+|+|||+||+||++|.-|.||.+...+.
T Consensus 288 ~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV- 366 (636)
T KOG2394|consen 288 IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV- 366 (636)
T ss_pred eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE-
Confidence 3445899999999999999999999999999999888877777778899999999999999999999999999997664
Q ss_pred EEEeecCCCCeEEEEEeC
Q 004207 633 LRTFTGHSTTVMSLDFHP 650 (768)
Q Consensus 633 ~~~~~~h~~~V~slafsp 650 (768)
+..-.+|++.|..|+|+|
T Consensus 367 VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 367 VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccccccceeeEeecc
Confidence 777789999999999983
No 221
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.30 E-value=7.5e-12 Score=129.44 Aligned_cols=205 Identities=16% Similarity=0.243 Sum_probs=149.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCeeEEEeec
Q 004207 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTG 638 (768)
Q Consensus 560 sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl~t~~~~~~~~~~ 638 (768)
-++|||+|+++|+++.- ++.|-|.++.+....+.. -..|.-|.|..|..+++ ....|+.|.+|++...+. ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 37899999999999765 889999888766544432 34678889998866654 456688999999998886 444555
Q ss_pred CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe---EEE-------
Q 004207 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY---ISI------- 708 (768)
Q Consensus 639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~---I~I------- 708 (768)
...++.+++|+|+|++++.+...+-.|.+|.+.+.++...-.....+..++|+|+|.+.+.++.-.. +.|
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 6678999999999999999999999999999998887766555677889999999988776664321 111
Q ss_pred ----EECCCceE-----eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 709 ----LDVETQVC-----RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 709 ----wD~~t~~~-----~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
|++.|... ......+.+||-.-...+......-.|..++|+|.+.+|++|+.|+.++|-
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhh
Confidence 22222211 111115667764433322222223568999999999999999999998873
No 222
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.30 E-value=9.7e-11 Score=122.17 Aligned_cols=252 Identities=15% Similarity=0.243 Sum_probs=173.5
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
...+.+.+.-|.+.+.|.++|+|+-.+. +..+..+. .....+++++.++++...|++|-..|+
T Consensus 29 ~~~l~~~e~gv~~~s~drtvrv~lkrds---------------~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 29 AAILIPKEEGVISVSEDRTVRVWLKRDS---------------GQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred hheeccCCCCeEEccccceeeeEEeccc---------------cccCchhh--hhCCCCceEeeeeccceEEEEEEecce
Confidence 3334556677788999999999965443 22222222 133467999999999999999999999
Q ss_pred EEEEECC----CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------------------------
Q 004207 579 AVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--------------------------- 627 (768)
Q Consensus 579 I~VWdl~----t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~--------------------------- 627 (768)
+.-+.+. .....+.+..|...|..+-|+-..+.+++.+.|+.+.---.+
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvG 171 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVG 171 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEec
Confidence 9888653 344556667788888888888777777777766543211011
Q ss_pred -------------CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC--eeEEEEecCCCeeEEEEec
Q 004207 628 -------------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQMRFQP 692 (768)
Q Consensus 628 -------------t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg--~~i~~~~~~~~i~sl~fsp 692 (768)
+.-..+..+.+|.+.+++++|.+... ++.+|..|..|.+||+.-. .......+...|..+...+
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 00113456788999999999999855 7779999999999999643 3333334566788888877
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEeeecc---------------------------------------------------
Q 004207 693 RLGRILAAAIENYISILDVETQVCRLKLQ--------------------------------------------------- 721 (768)
Q Consensus 693 ~~~~llags~Dg~I~IwD~~t~~~~~~~~--------------------------------------------------- 721 (768)
.-..+++++.|+.|.+||++.......-.
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~ 330 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSY 330 (404)
T ss_pred hheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccc
Confidence 77889999999999999997654322111
Q ss_pred -------eeEEee--------cCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 722 -------TLELWN--------MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 722 -------~I~iwd--------~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+++-| .....+..+..-...|+.+.+..+-.+|+|+|.|..|+|||
T Consensus 331 p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd 392 (404)
T KOG1409|consen 331 PTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWD 392 (404)
T ss_pred ccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEe
Confidence 333322 11111112222234588999888889999999999999998
No 223
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.30 E-value=3.6e-10 Score=123.61 Aligned_cols=188 Identities=9% Similarity=0.122 Sum_probs=127.8
Q ss_pred EEEEeCCCcEEEEECCC-Ce--EEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CCeeEEEeecCCCCeE
Q 004207 570 LATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVM 644 (768)
Q Consensus 570 LaSgs~Dg~I~VWdl~t-~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t-~~~~~~~~~~h~~~V~ 644 (768)
+++...|+.|.+|++.+ ++ .+.++. +.+.+..++++|++++|++++ .++.|.+|+++. +...........+...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34446789999999964 33 445554 345677899999999987765 478999999973 3321111112334567
Q ss_pred EEEEeCCCCeEEEEEeCCCcEEEEECCC-Ce---eEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeee
Q 004207 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLK 719 (768)
Q Consensus 645 slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~---~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~ 719 (768)
.++|+|+++.+++++..++.|.+||+.+ +. .+..+........++++|+++++++++ .++.|.+||+.+......
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8999999998887777789999999964 32 233333334567789999999987666 569999999976322110
Q ss_pred cceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 004207 720 LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVKIWK 768 (768)
Q Consensus 720 ~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-DG~V~IWD 768 (768)
. ......... ...+..++|+|++++|+++.. ++.|.+||
T Consensus 164 ~---------~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 164 Q---------EPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQ 203 (330)
T ss_pred c---------CCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence 0 000011111 234678999999999988876 89999986
No 224
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.27 E-value=1.8e-11 Score=133.30 Aligned_cols=171 Identities=15% Similarity=0.183 Sum_probs=134.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEE
Q 004207 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sl 646 (768)
...|+.++.||++.|.+ +.+++...+..|.+.|.|-+|+|||.-|+|++.||.|++|.-... ...++.....+|+|+
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEE
Confidence 34788999999999987 457888889999999999999999999999999999999986431 123344456789999
Q ss_pred EEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEE
Q 004207 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLEL 725 (768)
Q Consensus 647 afsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~i 725 (768)
+|.|+.+.++++.+ +.+.|=.+.....+-.++ +.+-|.++.|++..+.+++|+.|-..+|||.....
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~---------- 219 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN---------- 219 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc----------
Confidence 99999888886654 456665665444444444 45568899999999999999999999999875532
Q ss_pred eecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 726 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 726 wd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
++....|+-+|++++|+|+ ..++.+|.
T Consensus 220 -------Lf~S~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 220 -------LFTSAAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred -------cccCChhccceeeeeeccc-cceeeeee
Confidence 2344579999999999999 66666665
No 225
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=9.8e-10 Score=124.75 Aligned_cols=191 Identities=17% Similarity=0.164 Sum_probs=128.2
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCC--cEEE
Q 004207 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV 623 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSpdg~~LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~Dg--tIrV 623 (768)
.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+.|+ +.+.+| .|++
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 344566789999999999998876544 368999998876543 323334556789999999876 444555 5888
Q ss_pred EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE
Q 004207 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags 701 (768)
||++++.. ..+..+........|+|+++.++++...++ .|+++|+.+++...............|+|++.+++..+
T Consensus 272 ~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 272 MDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence 89987653 445555566777899999998887776554 57777888777544332233345678999999988776
Q ss_pred cCC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 702 IEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 702 ~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
.++ .|.+||+.++.. ..+.. ........|+|+|++|+..+.+
T Consensus 350 ~~~~~~~l~~~dl~tg~~-----------------~~lt~-~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSV-----------------RILTD-TSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred ccCCceEEEEEECCCCCE-----------------EEccC-CCCCCCceECCCCCEEEEEEec
Confidence 533 356666655432 11111 1122245899999888776643
No 226
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=1.5e-10 Score=118.61 Aligned_cols=200 Identities=21% Similarity=0.265 Sum_probs=151.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~--tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~ 633 (768)
...++.|++.+.-++++-.+|.+.+-+.....+.. +++.|...++...|+. +.+++++|+.|+.+..||++-++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 35688999999999999999999966665555544 8899999999999976 45799999999999999999544333
Q ss_pred -EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-CeeEEEEecCCCeeEEEEecCCC-EEEEEEcCCeEEEEE
Q 004207 634 -RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLG-RILAAAIENYISILD 710 (768)
Q Consensus 634 -~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~-~llags~Dg~I~IwD 710 (768)
.....|...|.+|.-+|.....+++|+.|-.|++||.|+ ++++..-...++|..+.++|... .+++++..+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 336678899999999998888999999999999999994 78887777789999999999643 355566666677777
Q ss_pred CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEE-Ee
Q 004207 711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVK-IW 767 (768)
Q Consensus 711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~-IW 767 (768)
....... +. + .......|.+.+..-.|.....+|+|++ .|+.++ +|
T Consensus 283 ~~~~~~e--~~-~--------~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 283 SSDKVLE--FQ-I--------VLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred ecccccc--hh-e--------eeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 6554321 10 0 0113346777777777865556888876 577755 66
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.7e-10 Score=121.07 Aligned_cols=184 Identities=16% Similarity=0.239 Sum_probs=134.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCe---
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--- 631 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~--- 631 (768)
.+..++|++.-..||++..|-.|++||-.. ++...++. ....|+|++|.|. ++.|++|+..| |.||.......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc
Confidence 467789998666789999999999999766 55545542 3457999999996 55677777665 89998753221
Q ss_pred ----------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEE-ecCCCeeEEEEecCCCEEEEE
Q 004207 632 ----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 632 ----------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~-~~~~~i~sl~fsp~~~~llag 700 (768)
.+....+| .+|+++.|.+||..++-+.-.|..|.|||..++.++... ...++++-+.|+|++.+++++
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 11233445 689999999998866655556889999999999887766 457788999999999999999
Q ss_pred EcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207 701 AIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs 759 (768)
+-|+..++|.....-. -+-| .-..+.|...+|+|+|.+|+.++
T Consensus 257 t~davfrlw~e~q~wt------~erw----------~lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWT------KERW----------ILGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred cccceeeeehhcccce------ecce----------eccCCceeeeeecCCCCEEEEEE
Confidence 9999999995433111 0111 12334788888999887554443
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.8e-09 Score=122.70 Aligned_cols=175 Identities=17% Similarity=0.092 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCCe
Q 004207 558 VESCHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RT--VRVWDTENPDY 631 (768)
Q Consensus 558 I~sl~fSpdg~~LaSg-s~Dg--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-gt--IrVWDl~t~~~ 631 (768)
+.++.|+|||+.|+.. +.+| .|++||+++++..... .+...+....|+||++.|+.++.+ +. |+++|+.++..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 4568999999988754 4444 5889999887765443 344567889999999988777654 44 44456665543
Q ss_pred eEEEeecCCCCeEEEEEeCCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709 (768)
Q Consensus 632 ~~~~~~~h~~~V~slafsp~g~~lLaSgs~D--g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~Iw 709 (768)
..+..+...+.+..|+|+|+.+++++..+ ..|.+||+.++.... +..........|+|++..|++++.++...
T Consensus 324 --~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~-- 398 (429)
T PRK03629 324 --QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGS-- 398 (429)
T ss_pred --EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCce--
Confidence 33333445567889999999887766544 358889998876543 33323345678999999999988776421
Q ss_pred ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207 710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST 750 (768)
Q Consensus 710 D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp 750 (768)
.+.++++.......+..|.+.+...+|+|
T Consensus 399 ------------~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 399 ------------VLNLVSTDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ------------EEEEEECCCCCeEECccCCCCcCCcccCC
Confidence 12334444444445667888889999987
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=5.1e-10 Score=118.67 Aligned_cols=201 Identities=17% Similarity=0.278 Sum_probs=152.6
Q ss_pred ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC--Cc
Q 004207 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHD--KK 578 (768)
Q Consensus 502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~D--g~ 578 (768)
+.-.+..|.++-.+|.+.+|...... .. .. +...+..+ ..+..+.-++... .+++|+.. ..
T Consensus 111 l~~~dg~Litc~~sG~l~~~~~k~~d-~h-----------ss---~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 111 LKLADGTLITCVSSGNLQVRHDKSGD-LH-----------SS---KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE 174 (412)
T ss_pred hhhcCCEEEEEecCCcEEEEeccCCc-cc-----------cc---cceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence 34456677777888999999544331 10 00 11111122 3466666666444 56668888 78
Q ss_pred EEEEECCCCeEEEEeccC---------CCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEE
Q 004207 579 AVLWCTESFTVKSTLEEH---------TQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~~h---------~~~V~sl~fspd--g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~sla 647 (768)
+.|||++..+.++.-+.- .-+++++.|-+. ...|+|++.-+.||+||.+.+..++..+.-...+|+++.
T Consensus 175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~ 254 (412)
T KOG3881|consen 175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG 254 (412)
T ss_pred eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence 999999988666543321 125788999887 789999999999999999999888888888889999999
Q ss_pred EeCCCCeEEEEEeCCCcEEEEECCCCeeEEE-Eec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 648 fsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~-~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
..|.++ ++++|..-+.+..||++.++.... +.. .+.+.++..+|.+.++++++-|..|+|||+.+....+.
T Consensus 255 l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 255 LTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 999987 566899999999999999988776 443 67899999999999999999999999999999655543
No 230
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.25 E-value=1.1e-10 Score=117.97 Aligned_cols=158 Identities=20% Similarity=0.291 Sum_probs=124.8
Q ss_pred CCCCCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCC----------eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207 553 ASTSKVESCHFSP-DGK--LLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (768)
Q Consensus 553 ~H~~~I~sl~fSp-dg~--~LaSgs~Dg~I~VWdl~t~----------~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg 619 (768)
+..+.+.|..|.. ++. +++.|-.+|.|.+||+.++ +.+.....|..+|.++.|.+.-..=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 3456788888644 344 4667888999999999987 34445567999999999988666667888888
Q ss_pred cEEEEECCCC--CeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCC
Q 004207 620 TVRVWDTENP--DYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG 695 (768)
Q Consensus 620 tIrVWDl~t~--~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~ 695 (768)
.+..|.+... ...+.. ..-..-.|..+.+-||++ +++|++.|+.||||..++...+.+++. .+.|.+++|+|+.+
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 9999998753 222211 111234588899999976 999999999999999999999988875 57799999999999
Q ss_pred EEEEEEcCCeEEEEEC
Q 004207 696 RILAAAIENYISILDV 711 (768)
Q Consensus 696 ~llags~Dg~I~IwD~ 711 (768)
.+++++.|..|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 9999999999999986
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=7.2e-10 Score=126.16 Aligned_cols=172 Identities=13% Similarity=0.174 Sum_probs=122.3
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~ 653 (768)
..|.+||.+... ...+..|...+.+.+|+|||+.|+..+. +..|++||+.++.. ..+..+.+.+.+.+|+|+|+
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 478889986544 4456667888999999999999888764 45899999988764 34455666788999999999
Q ss_pred eEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCceEeeecceeEEeec
Q 004207 654 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQTLELWNM 728 (768)
Q Consensus 654 ~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg--~I~IwD~~t~~~~~~~~~I~iwd~ 728 (768)
.++++.+.++. |++||+.++................|+|++.+++.++. ++ .|+++|+.++
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-------------- 324 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-------------- 324 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC--------------
Confidence 88878776665 77789988776554444445667899999998887764 22 4555555443
Q ss_pred CCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC---cEEEeC
Q 004207 729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDK---CVKIWK 768 (768)
Q Consensus 729 ~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG---~V~IWD 768 (768)
....+..+...+....|+|+|++|+..+.++ .|.+||
T Consensus 325 ---~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d 364 (435)
T PRK05137 325 ---NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMK 364 (435)
T ss_pred ---CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEE
Confidence 2222323344567788999999988776532 455553
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=8.3e-10 Score=117.09 Aligned_cols=203 Identities=13% Similarity=0.155 Sum_probs=152.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCCCCEEEEEEcCCC-CEEEEEeCC--C
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSL-SRLATSSAD--R 619 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg-~~LaTgs~D--g 619 (768)
++......+++|..++.. ...|++|-.+|.+.+|..+.+. .+..+..+ ..+..+.-++.. .++++|+.. .
T Consensus 97 ~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 97 DAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENIN 173 (412)
T ss_pred cccccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccc
Confidence 344555667788887764 3467788889999999987432 33344444 457777777754 456668888 8
Q ss_pred cEEEEECCCCCeeEEEeec---------CCCCeEEEEEeCC-CCeEEEEEeCCCcEEEEECCCC-eeEEEEec-CCCeeE
Q 004207 620 TVRVWDTENPDYSLRTFTG---------HSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG-SCAGVFKC-QSGATQ 687 (768)
Q Consensus 620 tIrVWDl~t~~~~~~~~~~---------h~~~V~slafsp~-g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~~-~~~i~s 687 (768)
.+.|||++..+. +..-+. -.-.++++.|.+. -.+.|++|+.-+.|++||.+.+ +++..|.. ..++++
T Consensus 174 ~lkiwdle~~~q-iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 174 ELKIWDLEQSKQ-IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS 252 (412)
T ss_pred ceeeeeccccee-eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence 899999987632 222111 1123567778764 2457889999999999999875 46666765 678999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 688 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 688 l~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+...|.++.++++...+.+..||++.+..... .+.+-.+.|++|..+|.+.+|+++|-|..|+|+
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~---------------~~kg~tGsirsih~hp~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC---------------GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH 317 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceeecc---------------ccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence 99999999999999999999999998765432 234778899999999999999999999999999
Q ss_pred C
Q 004207 768 K 768 (768)
Q Consensus 768 D 768 (768)
|
T Consensus 318 D 318 (412)
T KOG3881|consen 318 D 318 (412)
T ss_pred e
Confidence 7
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.23 E-value=3.6e-11 Score=129.36 Aligned_cols=248 Identities=12% Similarity=0.092 Sum_probs=177.8
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCC---------CCc-ccc----------ccccCCCceeeEEEEecCCCCCe
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADP---------RDR-VGR----------SAEVGKGFTFTEFQLIPASTSKV 558 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~---------~~~-~~~----------~~~~~~~~~~~~~~~l~~H~~~I 558 (768)
...++..++.+..|+.-|.+-.|+.....-- +|. +.+ -|..--+..-.++++++.|.. |
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~-v 212 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIR-V 212 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCc-h
Confidence 3445667888888888888888755443211 000 000 000000112246677777654 8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeec
Q 004207 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~ 638 (768)
..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|...|+|.+|.....+. +..+.+
T Consensus 213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP-LvKiLc 291 (545)
T KOG1272|consen 213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP-LVKILC 291 (545)
T ss_pred hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch-HHHHHh
Confidence 8899999998999999999999999999999999988888899999999889999999999999999988665 666677
Q ss_pred CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee
Q 004207 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718 (768)
Q Consensus 639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~ 718 (768)
|.++|.+|+++++|. +++|.+.|..|+|||+++...+.++....+...++||..+ +++++....|.||.-......+
T Consensus 292 H~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~ 368 (545)
T KOG1272|consen 292 HRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGH 368 (545)
T ss_pred cCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhhhcCCCC
Confidence 999999999999987 5558888999999999998888877777778889998763 5667777778888432210000
Q ss_pred ecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207 719 KLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 762 (768)
Q Consensus 719 ~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG 762 (768)
...........+.|..|.|+|-.++|-+|...|
T Consensus 369 -----------~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 369 -----------GETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred -----------CCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 000000111234688888888777666665544
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.23 E-value=2.9e-09 Score=110.45 Aligned_cols=207 Identities=10% Similarity=0.134 Sum_probs=141.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEeccC--CCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCC
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEH--TQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPD 630 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-t~~~~~tl~~h--~~~V~sl~fspdg~~LaT-gs~DgtIrVWDl~t~~ 630 (768)
..+|.+|.+.+ ..|++.- +.+|+||... ..+.++.+... ...+.+++-+.+..+||. |-.-|.|.|-|+...+
T Consensus 94 ~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 94 NSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK 170 (346)
T ss_pred ccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence 56799999965 4455553 5789999876 44555544322 223444433334444544 3446899999998655
Q ss_pred e-eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc-EEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCe
Q 004207 631 Y-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 631 ~-~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~-I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~ 705 (768)
. ....+.+|.+.|.|++.+-+|. ++||++..|+ |||||..+|+.+.++.. +..|.+++|+|+..+|++++..|+
T Consensus 171 ~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 171 PNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred cCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 4 3578889999999999999976 8889998887 79999999999999875 566999999999999999999999
Q ss_pred EEEEECCCceEeee-cceeEEee------cC-CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 004207 706 ISILDVETQVCRLK-LQTLELWN------MT-ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK 765 (768)
Q Consensus 706 I~IwD~~t~~~~~~-~~~I~iwd------~~-~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~ 765 (768)
|+||.++....... ...+..+. +. ......+.--.+...-++|-.+.+.|+..+.||+.+
T Consensus 250 lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~ 317 (346)
T KOG2111|consen 250 LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYY 317 (346)
T ss_pred EEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence 99999876432211 00111111 00 111223333355666778877766777777788654
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.22 E-value=2.6e-09 Score=110.82 Aligned_cols=173 Identities=14% Similarity=0.136 Sum_probs=125.3
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecC--CCCeEEEEEeCCCCe
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STTVMSLDFHPSKED 654 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h--~~~V~slafsp~g~~ 654 (768)
.+|.|||-...+++.++. ...+|.+|++.++ +|++. ....|+||...+.-..++.+... ...+.+++-+.+...
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 379999977777777775 5678999999976 45554 46789999987433334444322 223444433333343
Q ss_pred EEEEEeCCCcEEEEECCCCee---EEEEecCCCeeEEEEecCCCEEEEEEcCCe-EEEEECCCceEeeecceeEEeecCC
Q 004207 655 LLCSCDNNSEIRYWSINNGSC---AGVFKCQSGATQMRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQTLELWNMTE 730 (768)
Q Consensus 655 lLaSgs~Dg~I~iWDl~sg~~---i~~~~~~~~i~sl~fsp~~~~llags~Dg~-I~IwD~~t~~~~~~~~~I~iwd~~~ 730 (768)
+++-|-.-|.|.|-|+...+. ...-.+...|.+++.+-+|..+++++..|+ |+|||..+++.+..++ .
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R--------R 222 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR--------R 222 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee--------c
Confidence 444566679999999986554 334446788999999999999999999987 7899988877654432 1
Q ss_pred CceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 731 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 731 ~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
| .....|.+++|+|+..+|+++|+.|+|+||
T Consensus 223 G------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 223 G------VDRADIYCIAFSPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred C------CchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence 1 234569999999999999999999999997
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.21 E-value=2.6e-08 Score=109.98 Aligned_cols=241 Identities=15% Similarity=0.171 Sum_probs=154.4
Q ss_pred CccccCCCCEEEeecC----CCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 004207 499 PNQLTDMDRFVDDGSL----DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 574 (768)
Q Consensus 499 ~~~l~~~~~~latGS~----D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs 574 (768)
...+++...+|.+... ++.|..|....+ ...+..+............++++|++++|+++.
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~---------------~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van 105 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD---------------TGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN 105 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETT---------------TTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCC---------------cceeEEeeeeccCCCCcEEEEEecCCCEEEEEE
Confidence 3444556666666554 345655533221 123444555543444566799999999998887
Q ss_pred C-CCcEEEEECCC-CeEEEE---ec----------cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCeeE---EE
Q 004207 575 H-DKKAVLWCTES-FTVKST---LE----------EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSL---RT 635 (768)
Q Consensus 575 ~-Dg~I~VWdl~t-~~~~~t---l~----------~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t~~~~~---~~ 635 (768)
. +|.|.++++.. +.+... +. .......++.|+|++++|++... ...|++|+++.....+ ..
T Consensus 106 y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 106 YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp TTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE
T ss_pred ccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec
Confidence 4 89999999986 443322 21 11245789999999998888654 3479999998655212 11
Q ss_pred -eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC--CCee--EEEEec-------CCCeeEEEEecCCCEEEEEE-c
Q 004207 636 -FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSC--AGVFKC-------QSGATQMRFQPRLGRILAAA-I 702 (768)
Q Consensus 636 -~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~--sg~~--i~~~~~-------~~~i~sl~fsp~~~~llags-~ 702 (768)
..........++|+|+++.+++++..++.|.+|++. .+.. +..+.. ......++++|++++|+++. .
T Consensus 186 ~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 186 IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence 223446688999999999999999999999999988 4432 222222 12467899999999988876 5
Q ss_pred CCeEEEEECCC--ceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 004207 703 ENYISILDVET--QVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 768 (768)
Q Consensus 703 Dg~I~IwD~~t--~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs-~DG~V~IWD 768 (768)
++.|.+|++.. +... . +. .+.........++++|++++|+++. .++.|.+|+
T Consensus 266 ~~sI~vf~~d~~~g~l~-~---~~----------~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLT-L---VQ----------TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp TTEEEEEEECTTTTTEE-E---EE----------EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEEecCCCceE-E---EE----------EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 67899999843 2221 1 11 1112233478999999999999887 466788874
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.1e-09 Score=122.62 Aligned_cols=190 Identities=19% Similarity=0.197 Sum_probs=123.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEE-EeCCCc--EEEE
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVW 624 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~D-g--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaT-gs~Dgt--IrVW 624 (768)
+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +....+.....+|+||++.|+. .+.++. |++|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 33556678899999999988876543 3 58889998876532 2222334457899999997765 556664 7777
Q ss_pred ECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~ 702 (768)
|+++++ ...+..+...+...+|+|+++.++++...++. |+++|+.+++..............+|+|++.+++..+.
T Consensus 292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence 887765 34445555667789999999988877765554 66678877765443322233445789999999887765
Q ss_pred C-C--eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 703 E-N--YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 703 D-g--~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
+ + .|.++|+.++.. ..+... .......|+|+|++|+..+.+
T Consensus 370 ~~g~~~I~~~dl~~g~~-----------------~~lt~~-~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 370 TNGKFNIARQDLETGAM-----------------QVLTST-RLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred cCCceEEEEEECCCCCe-----------------EEccCC-CCCCCceECCCCCEEEEEEec
Confidence 3 3 344455554322 111111 112234799999877766543
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.18 E-value=1.1e-09 Score=113.57 Aligned_cols=210 Identities=14% Similarity=0.174 Sum_probs=150.9
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeeE
Q 004207 556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~~~~ 633 (768)
+.|.-|.|..|..+++++ ..|+.|.+|++..-+-...+......+.+++|+|||+ +|.+...|-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 457778999888876654 6688999999998888888888888999999999995 56677789999999998866432
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCC-----------------------------------CcEEEEECCCCeeEEE
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----------------------------------SEIRYWSINNGSCAGV 678 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~D-----------------------------------g~I~iWDl~sg~~i~~ 678 (768)
... .+..+..++|+|+|....+....| ..+.+||---.-.+..
T Consensus 129 ~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 LPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred ecc--cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 222 244568899999987543322222 2344454333333344
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-------------------------------------
Q 004207 679 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ------------------------------------- 721 (768)
Q Consensus 679 ~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~------------------------------------- 721 (768)
+...-++..++|+|.+.++++|+.|+.++|.+--+-+....+.
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 4445678899999999999999999998886544332222111
Q ss_pred --------------------------------------------------------eeEEeecCCCceEEeccCCCCeeE
Q 004207 722 --------------------------------------------------------TLELWNMTENKTLTLSAHDKLVSS 745 (768)
Q Consensus 722 --------------------------------------------------------~I~iwd~~~~~~~~l~~H~~~I~s 745 (768)
.+-+||+...++..+-....+|..
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pira 366 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRA 366 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeE
Confidence 566788877777666666778999
Q ss_pred EEEeCCCCEEEEEECCCcEEEe
Q 004207 746 LAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 746 la~spdg~~LaSgs~DG~V~IW 767 (768)
..|+|....|+.+.....+++|
T Consensus 367 f~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 367 FEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred EEeCCCCceEEEEcCCceEEEE
Confidence 9999988777777766677777
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=5.2e-09 Score=118.85 Aligned_cols=176 Identities=15% Similarity=0.133 Sum_probs=113.0
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCcEEEE--ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEC--CC
Q 004207 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT--EN 628 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~La-Sgs~Dg~I~VW--dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl--~t 628 (768)
.+.+.+..|+|||+.|+ +.+.++...|| |+.++. ...+..+...+....|+|||+.|+..+. ++...||.+ .+
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 34567899999999876 56777776666 454444 4455555556678899999998876654 466666655 44
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCe-
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY- 705 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~- 705 (768)
+.. ..+..+.......+|+|+|+.+++++..++ .|.+||+.++...... .........|+|++..|+.++.++.
T Consensus 318 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 318 GAA--QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTTRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred Cce--EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCCCccCceECCCCCEEEEEEecCCC
Confidence 432 222222334456889999997776655443 6999999887654433 2334567899999999888876542
Q ss_pred --EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC
Q 004207 706 --ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV 751 (768)
Q Consensus 706 --I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd 751 (768)
+.+.++. ......+..+.+.+...+|+|-
T Consensus 395 ~~l~~~~~~-----------------g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 395 SVLAAVSSD-----------------GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEEEECC-----------------CCceEEeecCCCCCCCCccCCC
Confidence 3333332 2222233345667777888763
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=5.9e-10 Score=116.32 Aligned_cols=254 Identities=14% Similarity=0.227 Sum_probs=165.4
Q ss_pred cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCC------------CCCeEEEEE
Q 004207 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHF 563 (768)
Q Consensus 496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H------------~~~I~sl~f 563 (768)
.++.+.++..+.+|++|..+|.|.+|.......+ .+.....+..| ...|..+.|
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--------------ey~~~t~fqshepEFDYLkSleieEKinkIrw 92 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--------------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRW 92 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeeccccccc--------------ceeeeeeeeccCcccchhhhhhhhhhhhhcee
Confidence 3445566777899999999999999943322211 12222223333 346889999
Q ss_pred cCCCC--EEEEEeCCCcEEEEECCCCeEE-----------------------------------EEe-ccCCCCEEEEEE
Q 004207 564 SPDGK--LLATGGHDKKAVLWCTESFTVK-----------------------------------STL-EEHTQWITDVRF 605 (768)
Q Consensus 564 Spdg~--~LaSgs~Dg~I~VWdl~t~~~~-----------------------------------~tl-~~h~~~V~sl~f 605 (768)
.++++ .++..+.|++|++|.+...... +.+ ..|+..|.+|.+
T Consensus 93 ~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 93 LDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee
Confidence 98765 5777889999999976431110 111 258888999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCC-----CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE--
Q 004207 606 SPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-- 676 (768)
Q Consensus 606 spdg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~-----~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i-- 676 (768)
+.|...++++ .|-.|.+|+++-.. ..+.-++.+. .-|++..|||....+|+-.+..|+|++-|+|....-
T Consensus 173 NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 173 NSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred cCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 9999888886 67789999987433 2233333332 458899999998888988889999999999943211
Q ss_pred --EEEec-------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207 677 --GVFKC-------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK 741 (768)
Q Consensus 677 --~~~~~-------------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~ 741 (768)
..+.. -..|..+.|++.|+++++-.. -+|++||+...........++-+ ...++..+.. .+
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~--lr~kLc~lYE-nD 327 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY--LRSKLCSLYE-ND 327 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh--HHHHHHHHhh-cc
Confidence 11110 134678999999998887543 67999998543222111111111 1111111111 11
Q ss_pred C---eeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 742 L---VSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 742 ~---I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
. -..++|+.++.+++|||....+++|+
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred chhheeEEEEcCCcceEecccccceEEEec
Confidence 1 24688998889999999999999885
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=1.6e-09 Score=123.23 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=118.9
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D---gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~ 653 (768)
..|.+||..... ...+..+...+.+.+|+||++.|+.++.+ ..|++||+.++.. ..+..+.+...++.|+|+|+
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 368899986543 44555677789999999999999988754 3699999987664 23333445566889999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CCe--EEEEECCCceEeeecceeEEeec
Q 004207 654 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY--ISILDVETQVCRLKLQTLELWNM 728 (768)
Q Consensus 654 ~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg~--I~IwD~~t~~~~~~~~~I~iwd~ 728 (768)
.++++.+.++ .|++||+.+++.............++|+|++.++++++. ++. |+++|+.++.
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~------------- 327 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS------------- 327 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-------------
Confidence 8887776665 599999998876554433344567899999998887764 333 5555554432
Q ss_pred CCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC---cEEEeC
Q 004207 729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDK---CVKIWK 768 (768)
Q Consensus 729 ~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG---~V~IWD 768 (768)
...+..+......++|+|+|++|+..+.++ .|.+||
T Consensus 328 ----~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d 366 (433)
T PRK04922 328 ----AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMD 366 (433)
T ss_pred ----eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEE
Confidence 222222223345789999999988776443 477775
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.13 E-value=1.8e-08 Score=111.91 Aligned_cols=247 Identities=13% Similarity=0.151 Sum_probs=146.1
Q ss_pred cccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcE
Q 004207 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKA 579 (768)
Q Consensus 501 ~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs-~Dg~I 579 (768)
.+.+.++++.+.+.|+.|.+++.... +.+..++... ...++++|+||+++++++ .++.|
T Consensus 43 ~~s~Dgr~~yv~~rdg~vsviD~~~~-------------------~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 43 KFSPDGRYLYVANRDGTVSVIDLATG-------------------KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp E-TT-SSEEEEEETTSEEEEEETTSS-------------------SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEE
T ss_pred EecCCCCEEEEEcCCCeEEEEECCcc-------------------cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCce
Confidence 35667788888888999998855333 1233333333 367899999999988765 68999
Q ss_pred EEEECCCCeEEEEeccC-------CCCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC
Q 004207 580 VLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (768)
Q Consensus 580 ~VWdl~t~~~~~tl~~h-------~~~V~sl~fspdg~~LaTgs~D-gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~ 651 (768)
.|+|.++.+.+..+... ...+..|..+|....++..-.| +.|.+.|....+.................|+|+
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TT
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcc
Confidence 99999999999877532 3467888888887766655554 788888887765444344445567889999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeEEEEecC-----CCeeEEEEecCCCEEE----------EEEcCCeEEEEECCCceE
Q 004207 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRIL----------AAAIENYISILDVETQVC 716 (768)
Q Consensus 652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-----~~i~sl~fsp~~~~ll----------ags~Dg~I~IwD~~t~~~ 716 (768)
+++++++...+..|-++|..+++.+..+... ..+..+ .+|..+.+. +.-..+.+.+||..+.+.
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 9988887777889999999988877665431 111111 123222111 222222333444444333
Q ss_pred eeecc----------------------------eeEEeecCCCceEE-ecc-CCCCeeEEEEeCCCCEEEEEECC--CcE
Q 004207 717 RLKLQ----------------------------TLELWNMTENKTLT-LSA-HDKLVSSLAASTVNGMVASASHD--KCV 764 (768)
Q Consensus 717 ~~~~~----------------------------~I~iwd~~~~~~~~-l~~-H~~~I~sla~spdg~~LaSgs~D--G~V 764 (768)
+..+. .|.++|..+.+... +.. -...+..+.|+++|+++..+..| |.|
T Consensus 262 v~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 262 VKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp EEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred EEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE
Confidence 33222 56666766655442 221 12348899999999977666543 368
Q ss_pred EEeC
Q 004207 765 KIWK 768 (768)
Q Consensus 765 ~IWD 768 (768)
.|||
T Consensus 342 ~v~D 345 (369)
T PF02239_consen 342 VVYD 345 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.13 E-value=4.8e-09 Score=118.25 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=120.1
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCC
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D---gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~ 653 (768)
..|.++|..... ...+..+...+.+.+|+||+++|+.++.+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 358888876444 34455566778999999999999887754 3799999988753 23334556677899999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCceEeeecceeEEeec
Q 004207 654 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQTLELWNM 728 (768)
Q Consensus 654 ~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D-g--~I~IwD~~t~~~~~~~~~I~iwd~ 728 (768)
.++++.+.++ .|++||+.++................|+|++.+|+.++.. + .|+++|+.+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~-------------- 312 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG-------------- 312 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC--------------
Confidence 8887776554 5888999877654444333445577899999988877643 2 4555555443
Q ss_pred CCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC---cEEEeC
Q 004207 729 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDK---CVKIWK 768 (768)
Q Consensus 729 ~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG---~V~IWD 768 (768)
+...+..+...+..++|+|++++|+.++.++ .|.+||
T Consensus 313 ---~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 313 ---EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred ---CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 2223333445567889999999998888765 566664
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1.2e-08 Score=115.87 Aligned_cols=198 Identities=15% Similarity=0.077 Sum_probs=121.2
Q ss_pred CCCCCeEEEEEcCCCCE--E-EEEeCCC--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CC----cEE
Q 004207 553 ASTSKVESCHFSPDGKL--L-ATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR----TVR 622 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~--L-aSgs~Dg--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-Dg----tIr 622 (768)
.+...+.+-+|||||+. + ++...++ .|.+.++.+++..... ...+.....+|+|||+.|+..+. +| .+.
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 34556778899999974 2 2444444 4777888877644332 23445567899999988877653 22 345
Q ss_pred EEECCCC--CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEE--ECCC-CeeEEEEe-cCCCeeEEEEecCCCE
Q 004207 623 VWDTENP--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--SINN-GSCAGVFK-CQSGATQMRFQPRLGR 696 (768)
Q Consensus 623 VWDl~t~--~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iW--Dl~s-g~~i~~~~-~~~~i~sl~fsp~~~~ 696 (768)
+|++..+ .........+.......+|+|+|+.++++...+|...+| ++.. +.....+. ....+....|+|++..
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 5777653 222233333334456789999999888777767755555 4432 22233333 2345678899999999
Q ss_pred EEEEEcCC---eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-C--CcEEEeC
Q 004207 697 ILAAAIEN---YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIWK 768 (768)
Q Consensus 697 llags~Dg---~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-D--G~V~IWD 768 (768)
|+..+.++ .|.+||+.++ +...+......+....|+|||++|+..+. + ..|++||
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g-----------------~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATG-----------------RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCC-----------------CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 88776542 3555555443 33333333345677899999988775443 2 3455543
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=2.7e-09 Score=124.82 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=126.4
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC
Q 004207 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641 (768)
Q Consensus 562 ~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~ 641 (768)
-++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|.++.|+-||++++++|.|.++|+|++++.+.......+|..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence 34556668999999999999998744444468899999999999999999999999999999999998875557788999
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004207 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (768)
Q Consensus 642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~ 715 (768)
.|..++|+|. .++|++.|.+.++|+.. +....++.. ...+..++..+....+++++.|+.+++||.....
T Consensus 220 Rvw~~~~~~n---~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 220 RVWACCFLPN---RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eeEEEEeccc---eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 9999999987 67799999999999765 344445543 4568999999998889999999999999986643
No 246
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.10 E-value=6e-10 Score=135.06 Aligned_cols=189 Identities=22% Similarity=0.289 Sum_probs=148.0
Q ss_pred ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (768)
Q Consensus 502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V 581 (768)
-++...+..+|+-||.|++|....+ ..+...++ +....|+.+.|+..|+.+.++..||.+.+
T Consensus 2216 sHp~~~~Yltgs~dgsv~~~~w~~~----------------~~v~~~rt--~g~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2216 SHPSDPYYLTGSQDGSVRMFEWGHG----------------QQVVCFRT--AGNSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred CCCCCceEEecCCCceEEEEeccCC----------------CeEEEeec--cCcchhhhhhhcccCCceeeeccCCceee
Confidence 3667888899999999999954322 12222222 22378999999999999999999999999
Q ss_pred EECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 582 Wdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs---~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
|.+. .++....+.|.....+++|-. ..+++++ .++.+.+||..-....-...++|.+.++++++.|... +|++
T Consensus 2278 ~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llis 2353 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLIS 2353 (2439)
T ss_pred cccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEe
Confidence 9987 677778899999999999975 6677764 3679999997543322223388999999999999855 7779
Q ss_pred EeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc
Q 004207 659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (768)
Q Consensus 659 gs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~ 721 (768)
|+.+|.|++||++..+.++.+.. ++ ...++++++..|.|+||++.....++.+.
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999999998888777764 44 45789999999999999998875555443
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.08 E-value=2.9e-09 Score=124.57 Aligned_cols=190 Identities=16% Similarity=0.239 Sum_probs=148.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC----EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~----V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~ 633 (768)
|....+.-+.+.++.++.+..+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+....+.+
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p- 168 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP- 168 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-
Confidence 444555557778888888999999999887777666433322 112334667778999999999999999844432
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE--EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~--~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~ 711 (768)
..+.+|.+.|.++.|+.+|. +++++++|.++++|++++.+... .|.+...+..++|+|. ++++++.|.+.++|+.
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred ceecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 36889999999999999977 67799999999999999877654 4556788999999998 9999999999999965
Q ss_pred CCceEeeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 712 ETQVCRLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 712 ~t~~~~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...... ++..|. ..|..++..++...++|++.||.+++||
T Consensus 246 ~~~~l~-----------------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 246 NGTQLE-----------------VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred ccceeh-----------------hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 543221 233454 4589999999999999999999999996
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=3.1e-08 Score=112.39 Aligned_cols=178 Identities=16% Similarity=0.098 Sum_probs=112.7
Q ss_pred CeEEEEEcCCCCEEEEEeC-CC----cEEEEECCCC---eEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--E
Q 004207 557 KVESCHFSPDGKLLATGGH-DK----KAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW--D 625 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~-Dg----~I~VWdl~t~---~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVW--D 625 (768)
.....+|||||+.|+..+. +| .+.+|++..+ +.......+...+...+|+|||+.|+..+ .+|...|| +
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 3456899999998876543 22 3444776642 33333333333456789999999877665 46655555 4
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D--g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D 703 (768)
+.........+..+...+....|+|+|+.+++++..+ ..|.+||+.+++..........+....|+|++..|+..+.+
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC
Confidence 4422222444554556778899999999887776544 36999999988775544444456789999999988766543
Q ss_pred ---CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC
Q 004207 704 ---NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV 751 (768)
Q Consensus 704 ---g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd 751 (768)
..|+++|+.++ +...+....+.+...+|+|-
T Consensus 392 ~g~~~L~~vdl~~g-----------------~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 392 SNESELYLISLITK-----------------KTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CCCceEEEEECCCC-----------------CEEEeecCCCcccCceecCC
Confidence 34555555443 33333334455667788764
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.6e-08 Score=112.57 Aligned_cols=184 Identities=17% Similarity=0.254 Sum_probs=140.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEecc---CCCCEEEEEEc------C--------------CCCEEEEEeCCCcE
Q 004207 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV 621 (768)
Q Consensus 565 pdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~---h~~~V~sl~fs------p--------------dg~~LaTgs~DgtI 621 (768)
|...|||....||.++||++..++....+.. -++..++..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999988877655532 12334444552 1 22467788889999
Q ss_pred EEEECCCCCeeEEEe-ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEE
Q 004207 622 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 699 (768)
Q Consensus 622 rVWDl~t~~~~~~~~-~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~lla 699 (768)
.+|++..++...+.. .+|.+.|.++.++.+-. .|.+++.|+.+.+|+......++.+.. ...+.+++++|++..+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999887644433 56999999999987744 677999999999999999999998886 455889999999888887
Q ss_pred EEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC-----CCEEEEE-ECCCcEEEe
Q 004207 700 AAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV-----NGMVASA-SHDKCVKIW 767 (768)
Q Consensus 700 gs~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd-----g~~LaSg-s~DG~V~IW 767 (768)
++ +.|.+||+++.+.+ .+|.+|.++|.++.|... |.+|.++ ..+..+.+|
T Consensus 162 as--~~ik~~~~~~kevv----------------~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVV----------------ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred cc--ceEEEEEccCceEE----------------EEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 76 57888888876553 356799999999999876 5565554 456667776
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=4e-09 Score=116.31 Aligned_cols=163 Identities=17% Similarity=0.270 Sum_probs=133.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc------CCC-----CEEEEEEcCCCCEEEEEeCCC
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQ-----WITDVRFSPSLSRLATSSADR 619 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~------h~~-----~V~sl~fspdg~~LaTgs~Dg 619 (768)
+....+.|++|..++...+|++|+.||.|-.||..+...+.++.. |.+ .|+++.|+.+|-.+++|..+|
T Consensus 171 ~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G 250 (703)
T KOG2321|consen 171 FETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG 250 (703)
T ss_pred cccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC
Confidence 334457899999999999999999999999999887665555432 333 399999999999999999999
Q ss_pred cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC-CeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEE
Q 004207 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 698 (768)
Q Consensus 620 tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g-~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~ll 698 (768)
.|.|||+++....+..-.+..-+|..++|.+.+ ...+++++ ...++|||-.+|+....+.....+..+|+-|+++.++
T Consensus 251 ~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 251 SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFF 329 (703)
T ss_pred cEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEE
Confidence 999999998776555555567789999997753 33555655 6789999999999999998888899999999999999
Q ss_pred EEEcCCeEEEEECCCc
Q 004207 699 AAAIENYISILDVETQ 714 (768)
Q Consensus 699 ags~Dg~I~IwD~~t~ 714 (768)
++-.+..+..|-+...
T Consensus 330 ~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 330 TANESSKMHTYYIPSL 345 (703)
T ss_pred EecCCCcceeEEcccc
Confidence 9998888877766543
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.02 E-value=4.4e-07 Score=100.21 Aligned_cols=205 Identities=11% Similarity=0.135 Sum_probs=135.1
Q ss_pred CCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--e--EEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 004207 556 SKVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT 626 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~----Dg~I~VWdl~t~--~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl 626 (768)
.....++++|++++|+++.. ++.|..|++... + .+............|+++|++++|+++.. +|+|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34667899999999998876 568999987653 3 33344333455678999999999999886 889999999
Q ss_pred CCCCeeEE---Eee----------cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--eEE--EE--ecCCCeeE
Q 004207 627 ENPDYSLR---TFT----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG--VF--KCQSGATQ 687 (768)
Q Consensus 627 ~t~~~~~~---~~~----------~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--~i~--~~--~~~~~i~s 687 (768)
........ .+. .......++.|+|+++.++++.-....|.+|++.... ... .+ ........
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 87432221 111 1234578999999999888777667789999997654 322 22 33567889
Q ss_pred EEEecCCCEEEEEE-cCCeEEEEECC--CceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-CCc
Q 004207 688 MRFQPRLGRILAAA-IENYISILDVE--TQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKC 763 (768)
Q Consensus 688 l~fsp~~~~llags-~Dg~I~IwD~~--t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-DG~ 763 (768)
++|+|++.++++.. .++.|.+|++. ++.. .. +........ . .........|+++|++++|+++.. ++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~-~~---~~~~~~~~~---~-~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL-TE---IQTISTLPE---G-FTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEE-EE---EEEEESCET---T-SCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCce-eE---EEEeeeccc---c-ccccCCceeEEEecCCCEEEEEeccCCE
Confidence 99999999987776 47889999887 3321 11 111110000 0 011235788999999998887764 566
Q ss_pred EEEeC
Q 004207 764 VKIWK 768 (768)
Q Consensus 764 V~IWD 768 (768)
|.+|+
T Consensus 269 I~vf~ 273 (345)
T PF10282_consen 269 ISVFD 273 (345)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77764
No 252
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2e-09 Score=117.56 Aligned_cols=173 Identities=14% Similarity=0.220 Sum_probs=130.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-------~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg 619 (768)
.+..+.+|...|..++--.+.+.|++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3556789999999888777788899999999999998753 34778899999999999999888777664 89
Q ss_pred cEEEEECCCCCeeEEEe-ecCCCCeEEEEEeCC--CCeEEEEEeCCCcEEEEECCCCeeEEEEec------CCCeeEEEE
Q 004207 620 TVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRF 690 (768)
Q Consensus 620 tIrVWDl~t~~~~~~~~-~~h~~~V~slafsp~--g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~------~~~i~sl~f 690 (768)
.|++||.--+....... ....+.+..+...++ ...+++.|+...+|+++|.+.++.+..++. ...+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999976544322111 111223333333333 333455558889999999999887777764 234788999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEeeecc
Q 004207 691 QPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (768)
Q Consensus 691 sp~~~~llags~Dg~I~IwD~~t~~~~~~~~ 721 (768)
.+.|++++++-+.|+|.+.|.++++.+..++
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 9999999999999999999999998765443
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=5.9e-09 Score=108.99 Aligned_cols=209 Identities=20% Similarity=0.314 Sum_probs=138.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----EEEEeccCC------------CCEEEEEEcCCC--CEEEEE
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS 615 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-----~~~tl~~h~------------~~V~sl~fspdg--~~LaTg 615 (768)
.+-|.+|.|..+|.+||+|..+|.|.+|..+... ....+..|. ..|..|+|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999644322 233333333 358899999864 467778
Q ss_pred eCCCcEEEEECCCCCeeE----------------------------------E-EeecCCCCeEEEEEeCCCCeEEEEEe
Q 004207 616 SADRTVRVWDTENPDYSL----------------------------------R-TFTGHSTTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 616 s~DgtIrVWDl~t~~~~~----------------------------------~-~~~~h~~~V~slafsp~g~~lLaSgs 660 (768)
+.|++|++|.+....... + .-.+|.-.|.+|.++.|...++ +++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SAD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SAD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ecc
Confidence 899999999875321100 1 1235777899999999988655 554
Q ss_pred CCCcEEEEECCCC-eeEEEE--ec------CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeecceeEEeecCC
Q 004207 661 NNSEIRYWSINNG-SCAGVF--KC------QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTLELWNMTE 730 (768)
Q Consensus 661 ~Dg~I~iWDl~sg-~~i~~~--~~------~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~ 730 (768)
|-.|.+|+++-- .+.... +. ..-|++..|+|... .++..++.|+|++-|++......... .++....
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs--KlfEepe 260 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS--KLFEEPE 260 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh--hhhcccc
Confidence 788999998632 222222 11 22378889999754 46667789999999998643321111 1111111
Q ss_pred Cc-eE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 731 NK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 731 ~~-~~-~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.. .. .+..--..|..+.|+++|+|+++-+. -+|+|||
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD 299 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD 299 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence 10 00 12222346889999999999987654 5899997
No 254
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.95 E-value=1.2e-07 Score=102.62 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=116.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207 552 PASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg-~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~ 630 (768)
-+|.+.|.-..+..+++-++.|..|| .|-|||.++++... +...-+.|.++..+++|++++.+.....|.+.|++++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 36777888888988999999999999 89999999877654 44556789999999999999999888999999999987
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC----CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE
Q 004207 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D----g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags 701 (768)
. ...-....+-|+.++|||+++++ |-+--+ ..|+++|+..++........+.-.+-+|.|++++|+.-+
T Consensus 435 v-~~idkS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 V-RLIDKSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred e-eEecccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 5 33333455789999999998744 444333 469999999988877766555556678888888876654
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=9.5e-08 Score=108.55 Aligned_cols=163 Identities=12% Similarity=0.026 Sum_probs=110.3
Q ss_pred cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D---gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~ 654 (768)
.|.++|.+..+. ..+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++. ..+....+.+.+..|+|+|+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477888876544 4454567789999999999998877654 3699999987763 233333445667899999998
Q ss_pred EEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCceEeeecceeEEeecC
Q 004207 655 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQTLELWNMT 729 (768)
Q Consensus 655 lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg--~I~IwD~~t~~~~~~~~~I~iwd~~ 729 (768)
++++.+.++ .|++||+.++................|+|++..++..+. ++ .|+++|+.++..
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~------------- 323 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA------------- 323 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-------------
Confidence 887776665 688889998776554433444667889999998877664 22 466666655432
Q ss_pred CCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 730 ENKTLTLSAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
..+..........+|+|++++|+..+.
T Consensus 324 ----~~lt~~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 324 ----ERVTFVGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred ----EEeecCCCCccceEECCCCCEEEEEEc
Confidence 111111122345689999988877764
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=7.8e-08 Score=109.87 Aligned_cols=170 Identities=12% Similarity=0.081 Sum_probs=111.1
Q ss_pred cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe
Q 004207 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-g--tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~ 654 (768)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++. ..+....+.....+|+|+|+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 577778765443 3444566788999999999988876543 3 588999987664 222222334457899999998
Q ss_pred EEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCceEeeecceeEEeecC
Q 004207 655 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQTLELWNMT 729 (768)
Q Consensus 655 lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~-Dg--~I~IwD~~t~~~~~~~~~I~iwd~~ 729 (768)
++++.+.++. |++||+.+++..............+|+|++.+++..+. ++ .|+++|+.++.
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-------------- 341 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-------------- 341 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--------------
Confidence 8887777775 77889988776554444445677899999998877664 23 34555554432
Q ss_pred CCceEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcEEEe
Q 004207 730 ENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVKIW 767 (768)
Q Consensus 730 ~~~~~~l~~H~~~I~sla~spdg~~LaSgs~-DG~V~IW 767 (768)
...+..+.......+|+|+|++|+..+. ++...||
T Consensus 342 ---~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 342 ---VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred ---EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEE
Confidence 2222111222345689999988877655 4444444
No 257
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.91 E-value=1.1e-08 Score=103.48 Aligned_cols=254 Identities=11% Similarity=0.171 Sum_probs=152.4
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
.+..++++..++.+.++ ...+......|+-..+ ...++++..|.++-.+-+.+--+.-++++..||.+.+++.
T Consensus 46 ~~~~lf~~e~~~~~ss~-----g~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 46 AEYILFTGETSSQIISL-----GKGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred hhheeecccchhheeee-----ccceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 34566777777777766 2233333344443322 2345555566665555555556778999999999999987
Q ss_pred CCCe-EEEEeccCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEE
Q 004207 585 ESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 585 ~t~~-~~~tl~~h~~~V~sl~fspdg~~LaTgs~-----DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaS 658 (768)
+... ....+..-...-.+.++...++.+.++.. -+..++|+++..+..+..... ...|++++-||.-.+++++
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccccEEEE
Confidence 6511 11111111111223333334444444321 234567777654332222222 2349999999999999999
Q ss_pred EeCCCcEEEEECCCCeeEEEE-e-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCceEeeecc--eeEEee---cCC
Q 004207 659 CDNNSEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQ--TLELWN---MTE 730 (768)
Q Consensus 659 gs~Dg~I~iWDl~sg~~i~~~-~-~~~~i~sl~fsp~~-~~llags~Dg~I~IwD~~t~~~~~~~~--~I~iwd---~~~ 730 (768)
|+.||.|.+||.++......+ + ++..+..+-|+|.. ..|++++.||.+..||..+........ .+..|= ...
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~ 277 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVK 277 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCccc
Confidence 999999999999987543322 2 36778999999864 469999999999999998643222111 233441 111
Q ss_pred CceE---EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 731 NKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 731 ~~~~---~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
..+. .+....-.|+++.+. |..|++|++-+.|++++
T Consensus 278 s~i~i~~ll~~~~~SinsfDV~--g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 278 SRIEITSLLPSRSLSINSFDVL--GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ceEeeeccccccceeeeeeecc--CceEEeccccceEEEec
Confidence 1111 111223346666655 88999999999999874
No 258
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=4.3e-09 Score=118.56 Aligned_cols=210 Identities=19% Similarity=0.278 Sum_probs=154.8
Q ss_pred EecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 550 LIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 550 ~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg~I~VWdl~t~~-~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
.+.+|...|+.+-|+|.. ..+++++.|-.|..||+.+-. .+..+..-......|+|+-....+.+.+....|+|||++
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 457999999999999955 479999999999999998743 333443334456789998755555566778889999999
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC--eeEEEEecCCCeeEEEEecCCCEEE--EEEcC
Q 004207 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQMRFQPRLGRIL--AAAIE 703 (768)
Q Consensus 628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg--~~i~~~~~~~~i~sl~fsp~~~~ll--ags~D 703 (768)
.+..++..+++|...|..++|..-....+.+++.|++|++||.... +..+.+....+|..-++.|-+.-.+ ---.+
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~ 268 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG 268 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCC
Confidence 9998899999999999999998766667779999999999998753 3344555567777778888654322 22334
Q ss_pred CeEEEEECCCceEeeecceeEEeecCCC--ceEEeccCCCCeeEEEEeCCC----------CEEEEEECCCcEEEe
Q 004207 704 NYISILDVETQVCRLKLQTLELWNMTEN--KTLTLSAHDKLVSSLAASTVN----------GMVASASHDKCVKIW 767 (768)
Q Consensus 704 g~I~IwD~~t~~~~~~~~~I~iwd~~~~--~~~~l~~H~~~I~sla~spdg----------~~LaSgs~DG~V~IW 767 (768)
+.|.+++.+.. ...|+..++ .+.++.+|.+.|...-|-..+ -.|+|-|.|.++++|
T Consensus 269 n~v~~~~c~n~--------d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 269 NMVPQLRCENS--------DLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eeeeeccccch--------hhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 46666666553 223444332 345788999988877664322 279999999999999
No 259
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=1.7e-08 Score=107.81 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=116.5
Q ss_pred cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 004207 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (768)
Q Consensus 496 ~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~ 575 (768)
+.......+..++||++-.+....+|+...... +..+.....+......|..+..+........++.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCC
Confidence 334444567788888888777766765433321 1112222333333333444444333323334455
Q ss_pred CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l 655 (768)
...+.+|....+.+. .+-+|-.-+++|+|+||+++|+|+..|..|||-........-....||+..|..++.-++ +.
T Consensus 131 ~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~ 207 (390)
T KOG3914|consen 131 VYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YL 207 (390)
T ss_pred ceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ce
Confidence 566667776665554 345899999999999999999999999999998887654434556789999999999876 35
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEEec
Q 004207 656 LCSCDNNSEIRYWSINNGSCAGVFKC 681 (768)
Q Consensus 656 LaSgs~Dg~I~iWDl~sg~~i~~~~~ 681 (768)
|++++.|++|++||+++|+++.++..
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeecCCCCcEEEEecccCCcccccch
Confidence 77999999999999999999877764
No 260
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=1.2e-06 Score=99.13 Aligned_cols=182 Identities=11% Similarity=0.040 Sum_probs=119.0
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEE-EeCC--CcEEEEECCCC
Q 004207 557 KVESCHFSPDGKL-LATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD--RTVRVWDTENP 629 (768)
Q Consensus 557 ~I~sl~fSpdg~~-LaSgs~D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaT-gs~D--gtIrVWDl~t~ 629 (768)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+.+..|+|||+.|+. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6888999999984 6544443 468999998887654443 4555677889999987654 3334 46888888776
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC--cEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC---
Q 004207 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--- 704 (768)
Q Consensus 630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg--~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg--- 704 (768)
. ...+..+........|+|||+.++++.+..+ .|.++|+.+++......... ....|+|++.+++..+...
T Consensus 268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcc
Confidence 5 3344444443455689999998888876555 57778888777644433222 2358999999988777542
Q ss_pred ------eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 705 ------YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 705 ------~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
.|.++|+.+ +....+... .......|+|||+.|+..+.+
T Consensus 344 ~~~~~~~I~v~d~~~-----------------g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 344 FGKNTFNLYLISTNS-----------------DYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred cCCCCcEEEEEECCC-----------------CCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 344444443 333333222 123357899999877666543
No 261
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=1.1e-06 Score=109.86 Aligned_cols=206 Identities=15% Similarity=0.130 Sum_probs=137.2
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeccC-----------------CCCEEEEEEcC-CCCEEEEEeC
Q 004207 557 KVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEH-----------------TQWITDVRFSP-SLSRLATSSA 617 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs-~Dg~I~VWdl~t~~~~~tl~~h-----------------~~~V~sl~fsp-dg~~LaTgs~ 617 (768)
.-..|++.++++.|+++. ..+.|+++|..++.. .++.+. -....+|+|+| ++.++++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 457899999888766654 456799999877553 333210 11246899999 5666677777
Q ss_pred CCcEEEEECCCCCeeEEEeecC---------------CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-
Q 004207 618 DRTVRVWDTENPDYSLRTFTGH---------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC- 681 (768)
Q Consensus 618 DgtIrVWDl~t~~~~~~~~~~h---------------~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~- 681 (768)
++.|++||..++.. ..+.+. -.....|+|+|+++.++++...++.|++||+.++........
T Consensus 704 ~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 88999999987643 222111 123567999999988888888889999999987653211100
Q ss_pred ---------------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC
Q 004207 682 ---------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD 740 (768)
Q Consensus 682 ---------------------~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~ 740 (768)
......+++++++..+++-+.++.|++||..++........-. -....+. ...+.-
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~-~G~~dG~--~~~a~l 858 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK-AGFKDGK--ALKAQL 858 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC-cCCCCCc--cccccc
Confidence 0123578899998877777788999999998765432211000 0000111 112333
Q ss_pred CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 741 KLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 741 ~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.....|+++++|.++++-+.++.|++||
T Consensus 859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 859 SEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred CCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 4678999999999888888999999996
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.85 E-value=1e-08 Score=124.68 Aligned_cols=186 Identities=16% Similarity=0.298 Sum_probs=148.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~ 629 (768)
++.|-..|.++.-+|...+.+||+.||.|++|....+..+..+. .....|+.+.|+..|+.+..+..||.+.+|.+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence 34455668888889988999999999999999988777666553 2337899999999999999999999999999983
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCeEEEEEe---CCCcEEEEECCC---CeeEEEEecCCCeeEEEEecCCCEEEEEEcC
Q 004207 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINN---GSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs---~Dg~I~iWDl~s---g~~i~~~~~~~~i~sl~fsp~~~~llags~D 703 (768)
.+.....+|......+.|.. .++++.+ .++.+.+||.-- ..++. ..+.++++++++.|....+++|+.+
T Consensus 2283 -k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2283 -KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred -cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCc
Confidence 34778888999999999985 3555543 578999999642 23444 4457889999999999999999999
Q ss_pred CeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 704 NYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 704 g~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
|.|++||++....++.+. . ++ ...+|++|+..|.|+||+
T Consensus 2358 G~v~l~D~rqrql~h~~~---------------------~----~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQ---------------------A----LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred CcEEEeehHHHHHHHHhh---------------------h----hh-hhheeeccCcccceEEEE
Confidence 999999998876655443 1 33 456788888888888885
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.85 E-value=1.1e-07 Score=99.81 Aligned_cols=181 Identities=19% Similarity=0.296 Sum_probs=123.8
Q ss_pred ccCCCCCceEEEEecCCCCcc----------cccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCce
Q 004207 475 QHNGASSKSLLMFGSDGMGSL----------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (768)
Q Consensus 475 ~~s~s~~~~~l~~~~~~~~~~----------~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~ 544 (768)
..+.+.++++.+|-.-..+-+ ..+...+....+.|.+|-..+++.-|...++- ..
T Consensus 39 v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf---------------nk 103 (404)
T KOG1409|consen 39 VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF---------------NK 103 (404)
T ss_pred eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh---------------hh
Confidence 344556677777655443221 22233445566777888888888777443321 11
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE---------------------------------------EE--
Q 004207 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL---------------------------------------WC-- 583 (768)
Q Consensus 545 ~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V---------------------------------------Wd-- 583 (768)
....+....|...|..+-|+-...++++.+.|..+.- ..
T Consensus 104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~ 183 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLE 183 (404)
T ss_pred cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEe
Confidence 2234445567777777777666666666666543211 11
Q ss_pred CCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC
Q 004207 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (768)
Q Consensus 584 l~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg 663 (768)
.....++.++.+|.+.|++++|.+...+|++|..|..|.+||+-..+.....+.+|...|..+...+.-. .+++++.||
T Consensus 184 ~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg 262 (404)
T KOG1409|consen 184 QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDG 262 (404)
T ss_pred ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCC
Confidence 1112345677889999999999999999999999999999999877776788889999999998776644 566999999
Q ss_pred cEEEEECC
Q 004207 664 EIRYWSIN 671 (768)
Q Consensus 664 ~I~iWDl~ 671 (768)
.|.+||+.
T Consensus 263 ~i~~w~mn 270 (404)
T KOG1409|consen 263 GIVVWNMN 270 (404)
T ss_pred eEEEEecc
Confidence 99999986
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=3.2e-07 Score=101.66 Aligned_cols=122 Identities=11% Similarity=0.236 Sum_probs=84.3
Q ss_pred EEEEeCCCCeEEEEEe--CC---------CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE--cCCeEEEEEC
Q 004207 645 SLDFHPSKEDLLCSCD--NN---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDV 711 (768)
Q Consensus 645 slafsp~g~~lLaSgs--~D---------g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags--~Dg~I~IwD~ 711 (768)
.+.|++.|.-+|+..+ .| .+++++++...++...+...++|.++.|+|.+..++++. .-.++.|||+
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl 301 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL 301 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence 3566666665555433 23 367778887666777777789999999999998766554 4667888887
Q ss_pred CCceEeeecc--------------------------eeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC-----
Q 004207 712 ETQVCRLKLQ--------------------------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH----- 760 (768)
Q Consensus 712 ~t~~~~~~~~--------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~----- 760 (768)
+.... ..+. .+++||+...+.+.-.. ...-+-+.|+|||.+|+|++.
T Consensus 302 r~~~v-~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-a~~tt~~eW~PdGe~flTATTaPRlr 379 (566)
T KOG2315|consen 302 RGKPV-FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK-AANTTVFEWSPDGEYFLTATTAPRLR 379 (566)
T ss_pred CCCEe-EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc-cCCceEEEEcCCCcEEEEEeccccEE
Confidence 65322 1111 89999998866553222 223456899999999999873
Q ss_pred -CCcEEEeC
Q 004207 761 -DKCVKIWK 768 (768)
Q Consensus 761 -DG~V~IWD 768 (768)
|+.++||+
T Consensus 380 vdNg~Kiwh 388 (566)
T KOG2315|consen 380 VDNGIKIWH 388 (566)
T ss_pred ecCCeEEEE
Confidence 78899995
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=7.1e-07 Score=99.62 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=118.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~--~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V 643 (768)
|...++-|...|.|.+|++..+++...+. .|.+.|.++.|+.+-..|.+++.|+.+..|+...... ++.+.+....+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~ 147 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPLV 147 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eeeeccCCCcc
Confidence 44468888889999999999999988875 6899999999999999999999999999999987654 78888888899
Q ss_pred EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-CCeeEEEEecC-----CCEEEEEE-cCCeEEEEECCC
Q 004207 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR-----LGRILAAA-IENYISILDVET 713 (768)
Q Consensus 644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~-~~i~sl~fsp~-----~~~llags-~Dg~I~IwD~~t 713 (768)
.+++.+||+. ++++++ +.|++||+++.+.+..|.++ +.|.++.|.-. |.+++++. .+..|.+|-++.
T Consensus 148 ~sl~is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 148 SSLCISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ceEEEcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999977 555664 58999999999999999975 55888888766 66666654 455566665543
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=7.6e-06 Score=87.13 Aligned_cols=215 Identities=11% Similarity=0.134 Sum_probs=141.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCC--CeEEE--EeccCCCCEEEEEEcCCCCEEEEEeCC-CcEEEE
Q 004207 553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVW 624 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~---Dg~I~VWdl~t--~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~D-gtIrVW 624 (768)
.+.+.++-|+|+++.++|.++.. +|.|..|.++. |++.. .......+-+.|++++++++|+++... |.|.|+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 45566888999999999888855 47788777764 44432 112223344889999999999999874 689999
Q ss_pred ECCCCCee--EEEeecCCCC----------eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE----EEecCCCeeEE
Q 004207 625 DTENPDYS--LRTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKCQSGATQM 688 (768)
Q Consensus 625 Dl~t~~~~--~~~~~~h~~~----------V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~----~~~~~~~i~sl 688 (768)
-+...... ......|.+. +.+..+.|+++.++++.-..-.|.+|++..|.... .++...+...|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 98653221 1122335444 88899999988666554444579999999776543 23346678899
Q ss_pred EEecCCCEEEEEE-cCCeEEEEECCCc-eEeeecc-----------------------------------eeEEeecC--
Q 004207 689 RFQPRLGRILAAA-IENYISILDVETQ-VCRLKLQ-----------------------------------TLELWNMT-- 729 (768)
Q Consensus 689 ~fsp~~~~llags-~Dg~I~IwD~~t~-~~~~~~~-----------------------------------~I~iwd~~-- 729 (768)
.|+|++.+.++.+ -+++|.+|..... .....+. .|.+|.+.
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999877766 5899999988774 1111111 33334332
Q ss_pred CCceEE---eccCCCCeeEEEEeCCCCEEEEEECCC-cEEEe
Q 004207 730 ENKTLT---LSAHDKLVSSLAASTVNGMVASASHDK-CVKIW 767 (768)
Q Consensus 730 ~~~~~~---l~~H~~~I~sla~spdg~~LaSgs~DG-~V~IW 767 (768)
++++.. ...+......+.|++.+++|+++..|+ .|.||
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 222221 112333467788888888888888643 46555
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=3.6e-08 Score=101.79 Aligned_cols=252 Identities=16% Similarity=0.264 Sum_probs=154.8
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC------------CCeEEEEEc
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFS 564 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~------------~~I~sl~fS 564 (768)
+..+.++..+.++++|...|.|.+|...... ++.++.+..+.+|. ..|..|.|.
T Consensus 29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~--------------~ceykf~teFQshe~EFDYLkSleieEKin~I~w~ 94 (460)
T COG5170 29 ITAVEFDETGLYLATGDKGGRVVLFEREKSY--------------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF 94 (460)
T ss_pred eeEEEeccccceEeecCCCceEEEeeccccc--------------ccchhhhhhhcccccchhhhhhccHHHHhhheeee
Confidence 3445566677899999999999999332221 22333333344443 457888887
Q ss_pred CCCC--EEEEEeCCCcEEEEECCCCe-------------------------------------EEE-----Ee-ccCCCC
Q 004207 565 PDGK--LLATGGHDKKAVLWCTESFT-------------------------------------VKS-----TL-EEHTQW 599 (768)
Q Consensus 565 pdg~--~LaSgs~Dg~I~VWdl~t~~-------------------------------------~~~-----tl-~~h~~~ 599 (768)
.++. .++..+.|++|++|.+.... .+. .+ ..|...
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 7554 57777899999999764320 000 01 247777
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--eeEEEeecCC-----CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC
Q 004207 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (768)
Q Consensus 600 V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~--~~~~~~~~h~-----~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s 672 (768)
|.+|.|+.|...++++ .|-.|.+|+++-.. ..+..++.|. .-|++..|||....+|.-.+..|+|++-|+|.
T Consensus 175 iNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 175 INSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 8999999987777775 67789999987543 3344445553 45888999998777887788899999999984
Q ss_pred Cee-E---EEE----e---------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEE
Q 004207 673 GSC-A---GVF----K---------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLT 735 (768)
Q Consensus 673 g~~-i---~~~----~---------~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~ 735 (768)
... . ..+ . ....|..+.|+++|+++++-.. .+|.|||.+..+.... ++.+.+....++..
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik--Ti~~h~~l~~~l~d 330 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK--TIPMHCDLMDELND 330 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce--eechHHHHHHHHHh
Confidence 221 0 111 0 0234778899999887776544 6799999877542211 11110000000000
Q ss_pred eccCCCCe---eEEEEeCCCCEEEEEECCCcEEEe
Q 004207 736 LSAHDKLV---SSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 736 l~~H~~~I---~sla~spdg~~LaSgs~DG~V~IW 767 (768)
.. ....| ..+.|+.+...+++|+.....-||
T Consensus 331 ~Y-EnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 331 VY-ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred hh-hccceeeeEEEEecCCcccccccccccceeee
Confidence 00 01112 246677777777787776655443
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.72 E-value=1e-05 Score=88.75 Aligned_cols=200 Identities=13% Similarity=0.111 Sum_probs=114.2
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccCCC-------CEEEEEEcCCCCEEEEEeC--CCcEEE
Q 004207 563 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSSA--DRTVRV 623 (768)
Q Consensus 563 fSpdg~~LaSgs~----------Dg~I~VWdl~t~~~~~tl~~h~~-------~V~sl~fspdg~~LaTgs~--DgtIrV 623 (768)
+|||++.|+++.. +..|.|||..+.+.+..+..... ....++++|||++|++... +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998877765 77899999999999988864222 2347899999999998763 689999
Q ss_pred EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-Cee-EEE---Eec-CCCe-eEEEEec-CCC
Q 004207 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC-AGV---FKC-QSGA-TQMRFQP-RLG 695 (768)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-g~~-i~~---~~~-~~~i-~sl~fsp-~~~ 695 (768)
.|+.+++. +..+.- .++..-+..+++.. ++ -| .||......+.+ ++. ... +.. ...+ ..-.|.+ ++.
T Consensus 133 vD~~~~kv-v~ei~v-p~~~~vy~t~e~~~-~~-~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAF-VRMMDV-PDCYHIFPTANDTF-FM-HC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EECCCCcE-EEEEeC-CCCcEEEEecCCcc-EE-Ee-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 99998775 333332 12222222222211 11 11 233333332221 110 111 111 0000 0013445 444
Q ss_pred EEEEEEcCCeEEEEECCCc-----eEeeec------------------------------------------ceeEEeec
Q 004207 696 RILAAAIENYISILDVETQ-----VCRLKL------------------------------------------QTLELWNM 728 (768)
Q Consensus 696 ~llags~Dg~I~IwD~~t~-----~~~~~~------------------------------------------~~I~iwd~ 728 (768)
++++. .+|.|++.|+... .....+ ..|.++|.
T Consensus 208 ~~~vs-~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPT-YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEe-cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 44443 3477777774221 110000 03555666
Q ss_pred CCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207 729 TENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 768 (768)
Q Consensus 729 ~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD 768 (768)
.+.+.+....-...+..|+++||++ +|++.. .++.|.|+|
T Consensus 287 ~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 287 KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 6666665444455789999999999 887666 578888875
No 269
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.2e-08 Score=105.06 Aligned_cols=201 Identities=15% Similarity=0.113 Sum_probs=143.1
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVL 581 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~-Dg~I~V 581 (768)
.....++.++|.|++++.|--.. ......++.++.|-+.|.+++.+-|+.++.|.+. |..+++
T Consensus 17 ~tka~fiiqASlDGh~KFWkKs~----------------isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 17 PTKAKFIIQASLDGHKKFWKKSR----------------ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV 80 (558)
T ss_pred eehhheEEeeecchhhhhcCCCC----------------ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence 34567999999999999992111 1223456778899999999999999999999887 999999
Q ss_pred EECCCCeEEEEecc--CCCCEEEEEEcCC-C-CEEEE-EeCCCcEEEEECCCCCeeE-EEeecCCCCeEEEEEeCCCCeE
Q 004207 582 WCTESFTVKSTLEE--HTQWITDVRFSPS-L-SRLAT-SSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDL 655 (768)
Q Consensus 582 Wdl~t~~~~~tl~~--h~~~V~sl~fspd-g-~~LaT-gs~DgtIrVWDl~t~~~~~-~~~~~h~~~V~slafsp~g~~l 655 (768)
+|+++...+.-++. -.+.+. +..++. . ..|++ .-.++.|.|+|-....+.. ..-.-|..+|.++.+.+.++ .
T Consensus 81 fDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s 158 (558)
T KOG0882|consen 81 FDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-S 158 (558)
T ss_pred EEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-c
Confidence 99988665533322 122222 112332 1 13333 3447899999987655333 34445899999999999977 4
Q ss_pred EEEEeCCCcEEEEECCC------CeeEEEE----------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 656 LCSCDNNSEIRYWSINN------GSCAGVF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 656 LaSgs~Dg~I~iWDl~s------g~~i~~~----------~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
+++.+..|.|..|..+. .+....+ +......++.|+|++..+.+.+.|..|+++++.+++.+..
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 55888889999998872 2222222 2345578999999999999999999999999999876554
Q ss_pred cc
Q 004207 720 LQ 721 (768)
Q Consensus 720 ~~ 721 (768)
+.
T Consensus 239 iD 240 (558)
T KOG0882|consen 239 ID 240 (558)
T ss_pred hh
Confidence 43
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.71 E-value=1.1e-06 Score=90.60 Aligned_cols=158 Identities=14% Similarity=0.148 Sum_probs=116.7
Q ss_pred CCeEEEEEcC---CCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCC------CEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 556 SKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 556 ~~I~sl~fSp---dg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~------~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
..+..+.|+. +|. .++-+..+|.|.+|..........+.+-.. ...++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3456666653 455 567778889999997765444444433211 245788999899999999999998555
Q ss_pred CCCCC-eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeEEE--EecCCCeeEEEEecC-CCEEEEE
Q 004207 626 TENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQPR-LGRILAA 700 (768)
Q Consensus 626 l~t~~-~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~--~~~~~~i~sl~fsp~-~~~llag 700 (768)
..... ..+..++.|.-+++...|+....+++.+|++|+.+..||+| .++.+.. ..+..+|.++.-+|. ..++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 44332 22457899999999999998888899999999999999999 3344432 234677888887764 5679999
Q ss_pred EcCCeEEEEECCC
Q 004207 701 AIENYISILDVET 713 (768)
Q Consensus 701 s~Dg~I~IwD~~t 713 (768)
+.|..|++||.++
T Consensus 230 sYDe~i~~~DtRn 242 (339)
T KOG0280|consen 230 SYDECIRVLDTRN 242 (339)
T ss_pred ccccceeeeehhc
Confidence 9999999999985
No 271
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.69 E-value=5.4e-07 Score=104.38 Aligned_cols=266 Identities=17% Similarity=0.222 Sum_probs=171.1
Q ss_pred eEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCC-CCCCCCccc------cccccCCCceeeEEEEecCC-
Q 004207 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPD-DADPRDRVG------RSAEVGKGFTFTEFQLIPAS- 554 (768)
Q Consensus 483 ~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~-~~d~~~~~~------~~~~~~~~~~~~~~~~l~~H- 554 (768)
.-++|..+..+ .+++..++.++..+-.|+..|++..+.... ....+..+- +......+...-....++.-
T Consensus 45 ~~L~~~~~~~G--~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~~i~~ls~~alr~~~ 122 (1118)
T KOG1275|consen 45 AELISVGASYG--TVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTESGIFTLSKTALRATT 122 (1118)
T ss_pred cceeeeccccc--cccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhhhheeeeHHHhhhhh
Confidence 44555555554 677778888888888888888887763321 111111100 11001111000000001000
Q ss_pred CCCeEEEEE------------cCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 004207 555 TSKVESCHF------------SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (768)
Q Consensus 555 ~~~I~sl~f------------Spdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIr 622 (768)
...+....| .-++..++.|+.-..+..+|+.+.+..+........|+-++. ++++|++|...|+|.
T Consensus 123 r~gl~~~~~~~~s~~~M~~~~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~ 200 (1118)
T KOG1275|consen 123 RQGLPVFDFTCPSMTKMASSLHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVF 200 (1118)
T ss_pred ccCceeecccCCCHHHHHHHhccCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEE
Confidence 000110111 114556777877788899999988877776555545666655 478999999999999
Q ss_pred EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC---------CCcEEEEECCCCeeEEEEecCCCeeEEEEecC
Q 004207 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 693 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~---------Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~ 693 (768)
+-|.++.+. +.++.+|.+.|.+++.. |+ +|++|+. |..|+|||+|.-+.+..+..+....-+.|+|.
T Consensus 201 LrD~~s~~~-iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Ps 276 (1118)
T KOG1275|consen 201 LRDPNSFET-IHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPS 276 (1118)
T ss_pred eecCCcCce-eeeeeccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhccc
Confidence 999998765 89999999999888776 33 6667763 56789999999887777766666677888886
Q ss_pred CC-EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 694 LG-RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 694 ~~-~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
-. .+++++..|.+.+.|..+.... ......+......|.++++++++..++.|..+|.|.+|-
T Consensus 277 l~t~~~V~S~sGq~q~vd~~~lsNP------------~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 277 LTTRLAVTSQSGQFQFVDTATLSNP------------PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceEEEEecccceeeccccccCCC------------ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 54 4777778888888774332110 011112223445599999999999999999999999993
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1.1e-07 Score=107.06 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=121.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---------------VKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~---------------~~~tl~~h~~~V~sl~fspdg~~LaTgs~D 618 (768)
......|+.|+....|||+|+.||.++|..+.+.. .-.++.+|+..|..+.|+.+...|-|...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34568999999999999999999999999775421 124678999999999999998999999999
Q ss_pred CcEEEEECCCCCeeEEE-eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCE
Q 004207 619 RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 696 (768)
Q Consensus 619 gtIrVWDl~t~~~~~~~-~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~ 696 (768)
|.|.||-+-.+..+... -...++.|.+++|+.+|.. +|..-.||.|.+=.++. ..+.--.. ......+.|+++...
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDG-NRIWGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeecc-ceecchhcchheccceeecccHHH
Confidence 99999999876643222 2334577999999999874 55677788888777663 32221111 123457889999888
Q ss_pred EEEEEcCCeEEEEECCC
Q 004207 697 ILAAAIENYISILDVET 713 (768)
Q Consensus 697 llags~Dg~I~IwD~~t 713 (768)
++++-..|.+.+||...
T Consensus 171 ~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQG 187 (1189)
T ss_pred HHhhhcCCcEEEecccc
Confidence 88888889999998754
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.68 E-value=1.1e-05 Score=83.78 Aligned_cols=205 Identities=17% Similarity=0.214 Sum_probs=127.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207 561 CHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (768)
Q Consensus 561 l~fSpdg~~LaSgs~Dg~I~VWdl~t--~~~~~tl~~h~---~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~ 635 (768)
++.+.||++||+. .|..|-|-..+. ..++.....+. -.=.-++|+||+.+||.+...|+|+|||+.... +..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence 5667789888876 466677765433 12223322222 234679999999999999999999999998533 222
Q ss_pred ee-------cCCCCeEEEEEeCCC-----CeEEEEEeCCCcEEEEECCC-----CeeEEEEec----CCCeeEEEEecCC
Q 004207 636 FT-------GHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFKC----QSGATQMRFQPRL 694 (768)
Q Consensus 636 ~~-------~h~~~V~slafsp~g-----~~lLaSgs~Dg~I~iWDl~s-----g~~i~~~~~----~~~i~sl~fsp~~ 694 (768)
+. .-...|..+.|.+.. ...|++-..+|.++-|-+.. ....++|.. ..+|.++.|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 21 123457777775532 22344555677887776532 233444443 5679999999998
Q ss_pred CEEEEEEcCC-----------eEEEEECCCceEeee----c--------ceeEEeecCCCceEEe-ccCCCCeeEEEEeC
Q 004207 695 GRILAAAIEN-----------YISILDVETQVCRLK----L--------QTLELWNMTENKTLTL-SAHDKLVSSLAAST 750 (768)
Q Consensus 695 ~~llags~Dg-----------~I~IwD~~t~~~~~~----~--------~~I~iwd~~~~~~~~l-~~H~~~I~sla~sp 750 (768)
+.|++|+... .+..|.+-....-.. . .+..+|.+...+.... ......|..|..+|
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 8888776421 355565543321111 0 0112333222222211 22456799999999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 004207 751 VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 751 dg~~LaSgs~DG~V~IWD 768 (768)
||..||+...+|.|.||+
T Consensus 240 dg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWE 257 (282)
T ss_pred CCCEEEEEEcCCeEEEEe
Confidence 999999999999999996
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=5.6e-08 Score=109.78 Aligned_cols=197 Identities=20% Similarity=0.358 Sum_probs=144.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCC--CEEEEEEcCCC--CEEEEEeCCCcEEEEECCCC
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQ--WITDVRFSPSL--SRLATSSADRTVRVWDTENP 629 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t-~~~~~tl~~h~~--~V~sl~fspdg--~~LaTgs~DgtIrVWDl~t~ 629 (768)
.+.+.++.++|.|+-+|.++.-| +.+.|++. +....-+. |.. .|-.+.|+|.. .+-++....-.-.||++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 34578899999999999998776 55556654 33333332 322 36778898853 34444444444568988543
Q ss_pred --CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEec-CCCeeEEEEecCCCEEEEEEcCCe
Q 004207 630 --DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-QSGATQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 630 --~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~ 705 (768)
...-..+.+|...|+.+.|+|....++++|+.|-.|..||+++.. .+..+.. +.....|.|+.....+++.+..+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 233467788999999999999999999999999999999999743 4444443 667888999988888999999999
Q ss_pred EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 004207 706 ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 768 (768)
Q Consensus 706 I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd-g~~LaSgs~DG~V~IWD 768 (768)
|.+||.+.+... ...+.+|...|+.++|... ...+.+++.||+|++||
T Consensus 182 i~vwd~r~gs~p---------------l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~ 230 (1081)
T KOG0309|consen 182 IFVWDLRKGSTP---------------LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWD 230 (1081)
T ss_pred eEEEeccCCCcc---------------eEEecccceeeehHHHhhhhhhhhcccCCCCceeeec
Confidence 999998875431 2244568888888888743 35788999999999997
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.62 E-value=2.6e-07 Score=95.61 Aligned_cols=209 Identities=21% Similarity=0.334 Sum_probs=135.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----EEEEeccCC------------CCEEEEEEcCCC--CEEEEE
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS 615 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-----~~~tl~~h~------------~~V~sl~fspdg--~~LaTg 615 (768)
.+.|+++.|...|.||++|...|+|.+|..+... ....+.+|. ..|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999765422 122334443 347889997653 357777
Q ss_pred eCCCcEEEEECCCCCe-----------------------------------------eEEEe-ecCCCCeEEEEEeCCCC
Q 004207 616 SADRTVRVWDTENPDY-----------------------------------------SLRTF-TGHSTTVMSLDFHPSKE 653 (768)
Q Consensus 616 s~DgtIrVWDl~t~~~-----------------------------------------~~~~~-~~h~~~V~slafsp~g~ 653 (768)
+.|++|++|.+..... +.+.+ ..|.-.|.++.|+.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8999999998863210 00112 45777789999999877
Q ss_pred eEEEEEeCCCcEEEEECCCCe-e--EEEEec------CCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCceEeeeccee
Q 004207 654 DLLCSCDNNSEIRYWSINNGS-C--AGVFKC------QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQTL 723 (768)
Q Consensus 654 ~lLaSgs~Dg~I~iWDl~sg~-~--i~~~~~------~~~i~sl~fsp~~~-~llags~Dg~I~IwD~~t~~~~~~~~~I 723 (768)
.+| +++ |-.|.+|+++-.. + +..++. ..-|++..|+|... .+...++.|.|++-|++.........
T Consensus 186 t~l-SaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~-- 261 (460)
T COG5170 186 TLL-SAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK-- 261 (460)
T ss_pred eee-ecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch--
Confidence 555 544 7789999986421 1 111221 12378889999654 46667788999999998543211100
Q ss_pred EEeecC-CCc-eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 724 ELWNMT-ENK-TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 724 ~iwd~~-~~~-~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.++... .+. .-.+..-...|..+.|+++|+||++-+. -+|+|||
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 011100 000 0112233456889999999999987765 4899997
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.62 E-value=8.8e-06 Score=83.20 Aligned_cols=237 Identities=10% Similarity=0.023 Sum_probs=148.5
Q ss_pred ccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeC
Q 004207 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGH 575 (768)
Q Consensus 497 ~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~ 575 (768)
+..-.+-....+||+|+..|...+|...... + . ......|...|+-+.=..|. --+..++.
T Consensus 75 F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~-------------h----~~~cd~snn~v~~~~r~cd~~~~~~i~sn 136 (344)
T KOG4532|consen 75 FTPGSFINKCVTLADGGASGQFDLFACNTND-G-------------H----LYQCDVSNNDVTLVKRYCDLKFPLNIASN 136 (344)
T ss_pred ccchHhhccccEEEeccccceeeeecccCcc-c-------------c----eeeecccccchhhhhhhcccccceeeccC
Confidence 3344455677889999999999999443221 1 0 11112232222221111122 23667788
Q ss_pred CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-eeEE-EeecCCCCeEEEEEeCCCC
Q 004207 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLR-TFTGHSTTVMSLDFHPSKE 653 (768)
Q Consensus 576 Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~-~~~~-~~~~h~~~V~slafsp~g~ 653 (768)
|.++++.+++.+.....+....-.+.++++++|++++++.+....|..|.++... +.+. ........-.+..|+...
T Consensus 137 dht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~- 215 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND- 215 (344)
T ss_pred CcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-
Confidence 8888888877554443332222338899999999999999999999999987643 3334 233334556778888774
Q ss_pred eEEEEEeCCCcEEEEECCCCeeEEEEe------cCCCeeEEEEecCCCE--EEEEEcCCeEEEEECCCceEeeecceeEE
Q 004207 654 DLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQTLEL 725 (768)
Q Consensus 654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~------~~~~i~sl~fsp~~~~--llags~Dg~I~IwD~~t~~~~~~~~~I~i 725 (768)
..||++..||++.|||+|......... +.+.+..+.|++.|.. |+..-.-+.+.+.|+++...... |.+
T Consensus 216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~---I~i 292 (344)
T KOG4532|consen 216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV---IVI 292 (344)
T ss_pred ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE---Eec
Confidence 588899999999999999754333222 3566889999986543 44555567899999998764332 222
Q ss_pred eecCCCceEEeccCC-CCeeEEEEeCCCCEEEEEECC
Q 004207 726 WNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 726 wd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSgs~D 761 (768)
.+-. ...|. ..|+.-.|+.++.-+.+.+++
T Consensus 293 ~~d~------~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 293 PDDV------ERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred Cccc------cccccccccccccccCCCcccccccch
Confidence 2211 12333 347778888777655555443
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.61 E-value=1.4e-05 Score=89.04 Aligned_cols=192 Identities=10% Similarity=0.063 Sum_probs=118.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe-
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV- 643 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~s-l~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V- 643 (768)
++..+++++.|+.|+.+|..+++.+....... .+.+ ... .+..++.++.++.|+.||.++++. +-.+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee
Confidence 56778888899999999999999987765332 2221 112 245777788899999999998875 32222211111
Q ss_pred ----EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC-----------e-eEEEEecCCCEEEEEEcCCeEE
Q 004207 644 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYIS 707 (768)
Q Consensus 644 ----~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~-----------i-~sl~fsp~~~~llags~Dg~I~ 707 (768)
.+.... + . .++.+..++.|..+|+++|+.+........ + ....+ .++.+++++.++.++
T Consensus 180 ~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 180 LRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVA 254 (377)
T ss_pred ecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEE
Confidence 111222 2 3 455777789999999999987765432111 0 11112 246788888899999
Q ss_pred EEECCCceEeeecc---------------------eeEEeecCCCceEEec-cC-CCCeeEEEEeCCCCEEEEEECCCcE
Q 004207 708 ILDVETQVCRLKLQ---------------------TLELWNMTENKTLTLS-AH-DKLVSSLAASTVNGMVASASHDKCV 764 (768)
Q Consensus 708 IwD~~t~~~~~~~~---------------------~I~iwd~~~~~~~~l~-~H-~~~I~sla~spdg~~LaSgs~DG~V 764 (768)
.||..+++...... .+..+|..+++.+--. .. ...+.+... .+..|++++.||.|
T Consensus 255 a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l 332 (377)
T TIGR03300 255 ALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYL 332 (377)
T ss_pred EEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEE
Confidence 99998775443221 4555565555543111 11 111222222 36688899999999
Q ss_pred EEeC
Q 004207 765 KIWK 768 (768)
Q Consensus 765 ~IWD 768 (768)
++||
T Consensus 333 ~~~d 336 (377)
T TIGR03300 333 HWLS 336 (377)
T ss_pred EEEE
Confidence 9875
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.1e-07 Score=102.05 Aligned_cols=163 Identities=17% Similarity=0.179 Sum_probs=113.8
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW 582 (768)
-+.++...++|.|.+|++|......|+.. +-.+..++..|+.+|.++-|-.+-++++++ ||.|.+|
T Consensus 744 idNENSFiSASkDKTVKLWSik~EgD~~~------------tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 744 IDNENSFISASKDKTVKLWSIKPEGDEIG------------TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW 809 (1034)
T ss_pred cccccceeeccCCceEEEEEeccccCccc------------cceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence 45566677899999999997665544321 122455678999999999999998888876 7899999
Q ss_pred ECCCCeEEEEecc--CCCCEEEEEEcC--CCCEE-EEEeCCCcEEEEECCCCCeeE--EEe--ecCCCCeEEEEEeCCCC
Q 004207 583 CTESFTVKSTLEE--HTQWITDVRFSP--SLSRL-ATSSADRTVRVWDTENPDYSL--RTF--TGHSTTVMSLDFHPSKE 653 (768)
Q Consensus 583 dl~t~~~~~tl~~--h~~~V~sl~fsp--dg~~L-aTgs~DgtIrVWDl~t~~~~~--~~~--~~h~~~V~slafsp~g~ 653 (768)
|.--++++..+.. ..+.+..|.--+ +..++ +.|+...+|+++|.+..+... +.. .+....+.+++..+.|+
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN 889 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGN 889 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcc
Confidence 9877776653311 112233333333 33334 444778899999999876522 222 23446689999999887
Q ss_pred eEEEEEeCCCcEEEEECCCCeeEEEEe
Q 004207 654 DLLCSCDNNSEIRYWSINNGSCAGVFK 680 (768)
Q Consensus 654 ~lLaSgs~Dg~I~iWDl~sg~~i~~~~ 680 (768)
++ +++-.+|+|.+.|.++|+.+..+.
T Consensus 890 ~l-Aa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 890 KL-AAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred hh-hHHhcCCcEEEEecCCCceeccCC
Confidence 54 466678999999999999887654
No 279
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=2.5e-06 Score=97.44 Aligned_cols=208 Identities=14% Similarity=0.196 Sum_probs=146.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCC------------CEEEEEeCCCcEEEE
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVW 624 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg------------~~LaTgs~DgtIrVW 624 (768)
.-.++.|+|.| +||-|+. ..|.|-|..+.+.+.+++.|...|+.|+|.|-. -+||++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35678899766 6777765 478999999999999999999999999997731 257778888999999
Q ss_pred ECCCCCeeEEEeecCCCCeEEEEEeCC---CCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCC-EEEE
Q 004207 625 DTENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-RILA 699 (768)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~slafsp~---g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~-~lla 699 (768)
|...... +..+..|..+|..++|-+. .+++|++-.....|.+|+..+|+....... +....|+.+.|-.. .+..
T Consensus 95 d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 95 DFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred Eehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 9987654 5667778899999999763 335666666678999999999998877665 34455678877543 3444
Q ss_pred EEcCCeEEEEECCCce----Eeeecc-----------------------------------------------------e
Q 004207 700 AAIENYISILDVETQV----CRLKLQ-----------------------------------------------------T 722 (768)
Q Consensus 700 gs~Dg~I~IwD~~t~~----~~~~~~-----------------------------------------------------~ 722 (768)
.+..|.|.+-+.-... ....+. .
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 4555655554431110 000000 5
Q ss_pred eEEeecCCCceEE-eccCCCCeeEEEEeCCC--CEEEEEECCCcEEEe
Q 004207 723 LELWNMTENKTLT-LSAHDKLVSSLAASTVN--GMVASASHDKCVKIW 767 (768)
Q Consensus 723 I~iwd~~~~~~~~-l~~H~~~I~sla~spdg--~~LaSgs~DG~V~IW 767 (768)
+.++|++-..++. +.-..+.+.-+.|-|+. ..|++.-.||.+.||
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 5566666555442 33344556667777776 589999999999998
No 280
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=9.6e-08 Score=109.59 Aligned_cols=167 Identities=19% Similarity=0.193 Sum_probs=119.8
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC----
Q 004207 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---- 619 (768)
Q Consensus 544 ~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg---- 619 (768)
.|+.++.|+.|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+.|.-+.+|..+++.+.-.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4667788899999999999999999999999999999999999999989999999999888888887766654321
Q ss_pred -------------------------------------cEEEEECCCCCeeEEEeec---CCCCeEEEEEeCCCCeEEEEE
Q 004207 620 -------------------------------------TVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSC 659 (768)
Q Consensus 620 -------------------------------------tIrVWDl~t~~~~~~~~~~---h~~~V~slafsp~g~~lLaSg 659 (768)
.+.|||+.++..+...+.+ ..-.-.+..|+|+...+|
T Consensus 1170 aLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred HHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence 2344554444332221221 111225677888866444
Q ss_pred eCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc
Q 004207 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (768)
Q Consensus 660 s~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~ 721 (768)
.|| .+||++..+.++.|..-.....-.|+|.|..++.-+ .|||+++.+..+...
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence 255 369999888888776433333446899998888765 479998876555443
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.56 E-value=2.8e-05 Score=86.75 Aligned_cols=192 Identities=9% Similarity=-0.003 Sum_probs=118.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEE-----EEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC
Q 004207 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-----DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~-----sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~ 641 (768)
+..++.++.++.|+.||.++++.+..+......+. +.... +..++.+..++.|..+|+++++..-..-.....
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 45677778899999999999999887754332211 11111 346788888999999999888642211111000
Q ss_pred ---C------e-EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207 642 ---T------V-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (768)
Q Consensus 642 ---~------V-~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~ 711 (768)
. + .+..+. +. .+++++.+|.++.||..+++.+....... ..... ..++.+++++.++.|..+|.
T Consensus 223 g~~~~~~~~~~~~~p~~~--~~-~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVD--GG-QVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred CCCchhhhhccCCccEEE--CC-EEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEECCCCeEEEEEC
Confidence 0 0 111122 23 44466678999999999998877665322 22222 23567888888999999998
Q ss_pred CCceEeeecc------------------------eeEEeecCCCceE-EeccCCCCe-eEEEEeCCCCEEEEEECCCcEE
Q 004207 712 ETQVCRLKLQ------------------------TLELWNMTENKTL-TLSAHDKLV-SSLAASTVNGMVASASHDKCVK 765 (768)
Q Consensus 712 ~t~~~~~~~~------------------------~I~iwd~~~~~~~-~l~~H~~~I-~sla~spdg~~LaSgs~DG~V~ 765 (768)
.+++...... .+.++|..+++.+ .+..+...+ .+..+. ++.|+.++.||.|+
T Consensus 297 ~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l~ 374 (377)
T TIGR03300 297 RSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--GDGLLVQTRDGDLY 374 (377)
T ss_pred CCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--CCEEEEEeCCceEE
Confidence 8775443221 5566676666665 233333322 222333 34688999999998
Q ss_pred EeC
Q 004207 766 IWK 768 (768)
Q Consensus 766 IWD 768 (768)
.|.
T Consensus 375 ~~~ 377 (377)
T TIGR03300 375 AFR 377 (377)
T ss_pred EeC
Confidence 763
No 282
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.55 E-value=3.5e-05 Score=84.57 Aligned_cols=162 Identities=12% Similarity=0.063 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCeEEEEeccCCC-------------------------------CEEEE-
Q 004207 558 VESCHFSPDGKLLATGG-H-DKKAVLWCTESFTVKSTLEEHTQ-------------------------------WITDV- 603 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs-~-Dg~I~VWdl~t~~~~~tl~~h~~-------------------------------~V~sl- 603 (768)
-..++++|||++|++.. . +..|.|.|+.+++.+..+....+ .+...
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~ 186 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE 186 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence 34678899999888775 3 67899999888776654321000 01111
Q ss_pred -------------EEcC-CCCEEEEEeCCCcEEEEECCCCCe----eEEEeec-------CCCCeEEEEEeCCCCeEEEE
Q 004207 604 -------------RFSP-SLSRLATSSADRTVRVWDTENPDY----SLRTFTG-------HSTTVMSLDFHPSKEDLLCS 658 (768)
Q Consensus 604 -------------~fsp-dg~~LaTgs~DgtIrVWDl~t~~~----~~~~~~~-------h~~~V~slafsp~g~~lLaS 658 (768)
.|.+ +++++++... |+|.+.|+..... ....+.. ..+.+.-++++++++++++.
T Consensus 187 vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~ 265 (352)
T TIGR02658 187 VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL 265 (352)
T ss_pred eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence 1223 6666666655 9999999654321 1111111 23344459999999988874
Q ss_pred Ee---------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCC-EEEEEE-cCCeEEEEECCCceEeeec
Q 004207 659 CD---------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAA-IENYISILDVETQVCRLKL 720 (768)
Q Consensus 659 gs---------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~-~llags-~Dg~I~IwD~~t~~~~~~~ 720 (768)
.. ..+.|.++|..+++.+..+.....+..++++|++. .|++.. .++.|.++|..+.+.+..+
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 42 22589999999999999999889999999999999 777666 5788999999988765543
No 283
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=7.6e-06 Score=91.00 Aligned_cols=150 Identities=20% Similarity=0.271 Sum_probs=107.6
Q ss_pred EEEEcCCCC-EEE--EEeCC---------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEE
Q 004207 560 SCHFSPDGK-LLA--TGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADRTVRVWD 625 (768)
Q Consensus 560 sl~fSpdg~-~La--Sgs~D---------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs--~DgtIrVWD 625 (768)
.+.|++-|. +|+ +..-| .++++++++..++...+. ..++|.++.|+|+++-|+++- .=-.+.|||
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence 467777555 232 22223 368888888555554443 478999999999998776653 245799999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC--CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc-
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 702 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~--Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~- 702 (768)
++. . .+..+ ..++-.++-|+|.|+.++++|-. -|.|-|||+.+.+++..+.. ...+-+.|+|+|.+|++++.
T Consensus 301 lr~-~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 301 LRG-K-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-ANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred CCC-C-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-CCceEEEEcCCCcEEEEEecc
Confidence 874 2 23333 35677889999999866665533 48899999999888888775 34456899999999999875
Q ss_pred -----CCeEEEEECCCce
Q 004207 703 -----ENYISILDVETQV 715 (768)
Q Consensus 703 -----Dg~I~IwD~~t~~ 715 (768)
|+.|+||+.....
T Consensus 376 PRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 376 PRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred ccEEecCCeEEEEecCce
Confidence 6888899876543
No 284
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=1.7e-07 Score=102.15 Aligned_cols=168 Identities=19% Similarity=0.293 Sum_probs=130.8
Q ss_pred eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCC-CCeEEEEEeCCCcEE
Q 004207 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIR 666 (768)
Q Consensus 588 ~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~-g~~lLaSgs~Dg~I~ 666 (768)
.+...+..|.+.|..|.|+..|..|++|+.|..|.+||+......+....+|...|.--.|.|. +..-+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4455778899999999999999999999999999999999888878888899998888888875 344577999999999
Q ss_pred EEECCC-CeeE---EEEecCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC
Q 004207 667 YWSINN-GSCA---GVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK 741 (768)
Q Consensus 667 iWDl~s-g~~i---~~~~~~~~i~sl~fsp~~~~-llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~ 741 (768)
+=.+.. +.+. +.-.+.+.|..++..|...+ |++++.|+.+.-+|++.......+. .-..+..
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-------------cr~~~~~ 279 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-------------CREADEK 279 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-------------eeccCCc
Confidence 977643 3332 23345788999999887765 8889999999999988765432221 1112222
Q ss_pred ---CeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 004207 742 ---LVSSLAASTVNG-MVASASHDKCVKIWK 768 (768)
Q Consensus 742 ---~I~sla~spdg~-~LaSgs~DG~V~IWD 768 (768)
...+++.+|... .|++++.|-.++|||
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD 310 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYD 310 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhc
Confidence 456788888764 899999999999986
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.53 E-value=1.6e-05 Score=97.90 Aligned_cols=211 Identities=16% Similarity=0.191 Sum_probs=137.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEE
Q 004207 554 STSKVESCHFSPDGKLLATGGH---D---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVW 624 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~---D---g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---DgtIrVW 624 (768)
+.+.-..|+|-.||.|||+.+. + ..|+||+.+ |.+..+-+.-.+--.+++|.|.|++||+... ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 5556778999999999998764 2 479999976 6666555544444567899999999999865 3456777
Q ss_pred ECCC---CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE--EEEec--CCCeeEEEEecCCCE-
Q 004207 625 DTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKC--QSGATQMRFQPRLGR- 696 (768)
Q Consensus 625 Dl~t---~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i--~~~~~--~~~i~sl~fsp~~~~- 696 (768)
.-+. ++..+.. ......|..|.|++++. +|+..-.| .|.+|-..+..-. ..+.. ...+..+.|+|....
T Consensus 287 ErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 287 ERNGLRHGEFTLRF-DPEEEKVIELAWNSDSE-ILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLR 363 (928)
T ss_pred ecCCcEeeeEecCC-CCCCceeeEEEECCCCC-EEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCE
Confidence 6443 2221111 23456799999999977 55555544 4999999876532 23332 344566999997655
Q ss_pred EEEEEcCCeEEEEECCCceEee------ecceeEEeecCCCceE-------------EeccCCCCeeEEEEeCCCCEEEE
Q 004207 697 ILAAAIENYISILDVETQVCRL------KLQTLELWNMTENKTL-------------TLSAHDKLVSSLAASTVNGMVAS 757 (768)
Q Consensus 697 llags~Dg~I~IwD~~t~~~~~------~~~~I~iwd~~~~~~~-------------~l~~H~~~I~sla~spdg~~LaS 757 (768)
|.+.+.++.+.++++.-..... ....+.+-|-..-.+. ....-...|.+++|++++..+++
T Consensus 364 L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av 443 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV 443 (928)
T ss_pred EEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence 6666666777666553322211 1112233232221111 11123568999999999988999
Q ss_pred EECCCcEEEeC
Q 004207 758 ASHDKCVKIWK 768 (768)
Q Consensus 758 gs~DG~V~IWD 768 (768)
-..||.|.+|+
T Consensus 444 l~~d~~l~~~~ 454 (928)
T PF04762_consen 444 LTSDGSLSIYE 454 (928)
T ss_pred EECCCCEEEEE
Confidence 99999999874
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.51 E-value=0.00023 Score=74.47 Aligned_cols=180 Identities=14% Similarity=0.104 Sum_probs=116.1
Q ss_pred eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCEEEEEEcCCCCEEEEEeCC--------CcEEE
Q 004207 558 VESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------RTVRV 623 (768)
Q Consensus 558 I~sl~fS-pdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-----h~~~V~sl~fspdg~~LaTgs~D--------gtIrV 623 (768)
...+++. +++. |+++..+ .+.++|..+++....... .....+++++.++|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6677777 5654 5555554 466669988866544432 34568899999999988877654 45777
Q ss_pred EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--e--EEEE-ec--C-CCeeEEEEecCCC
Q 004207 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--C--AGVF-KC--Q-SGATQMRFQPRLG 695 (768)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--~--i~~~-~~--~-~~i~sl~fsp~~~ 695 (768)
++.. ++ +......-.....|+|+|+++.++++-+..+.|..|++.... . ...+ .. . +..-.+++..+|+
T Consensus 120 ~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 120 IDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp EETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred ECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 7776 33 233333345678999999999888888888999999986322 1 1222 22 2 2367899999988
Q ss_pred EEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe-CCCCEEEEEE
Q 004207 696 RILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS-TVNGMVASAS 759 (768)
Q Consensus 696 ~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s-pdg~~LaSgs 759 (768)
.+++....+.|.+||.+ ++....+ .+. ...+++++|. ++.+.|+..+
T Consensus 197 l~va~~~~~~I~~~~p~-G~~~~~i--------------~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD-GKLLREI--------------ELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEETTTEEEEEETT-SCEEEEE--------------E-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEEcCCCEEEEECCC-ccEEEEE--------------cCC--CCCEEEEEEECCCCCEEEEEe
Confidence 77777788999999987 4432211 111 2368999995 5656555443
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.49 E-value=2.3e-05 Score=85.47 Aligned_cols=174 Identities=15% Similarity=0.156 Sum_probs=125.4
Q ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCCeeEEEeecCC
Q 004207 563 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHS 640 (768)
Q Consensus 563 fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg-tIrVWDl~t~~~~~~~~~~h~ 640 (768)
|++ +|.+++..+. |.+.|.+...+-.+. .+|...|.-..+.-+++-++.|..|| .|-|||.++++ +..+...-
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~l 401 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDL 401 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCc
Confidence 444 7888888875 678887765544443 25677799889988888899999999 99999999876 45566667
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEcCCe----EEEEECCCce
Q 004207 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY----ISILDVETQV 715 (768)
Q Consensus 641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~Dg~----I~IwD~~t~~ 715 (768)
+.|.++..+++|+.++ ++.....|.++|+.++.....-+. .+-|+.+.|+|++++++-+--+|. |++||+.+
T Consensus 402 g~I~av~vs~dGK~~v-vaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-- 478 (668)
T COG4946 402 GNIEAVKVSPDGKKVV-VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-- 478 (668)
T ss_pred cceEEEEEcCCCcEEE-EEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC--
Confidence 8899999999988555 666678899999999886554443 566999999999998887766653 55555554
Q ss_pred EeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207 716 CRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 716 ~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs 759 (768)
+++.......+.=.+-+|.|++++|.--+
T Consensus 479 ---------------~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 ---------------GKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---------------CeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 34333322223334567778887665443
No 288
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.47 E-value=1.5e-07 Score=63.33 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhc
Q 004207 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (768)
Q Consensus 10 ~~L~~yiydyl~k~~~~~~A~~~~~e~ 36 (768)
+.||.+|||||+++|+.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=1.1e-05 Score=91.23 Aligned_cols=247 Identities=11% Similarity=0.162 Sum_probs=150.8
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
...||++|+.||.+++.......+.....+ ......+.--.++.+|.+.|.-+.|+.....|-+...+|.|.||-+
T Consensus 25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWml 100 (1189)
T KOG2041|consen 25 ESGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWML 100 (1189)
T ss_pred cCCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEee
Confidence 567999999999999985543322211111 0112233445678899999999999998889999999999999987
Q ss_pred CCCeEEEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------------------------------CCe
Q 004207 585 ESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------------------------------PDY 631 (768)
Q Consensus 585 ~t~~~~~tl--~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t-------------------------------~~~ 631 (768)
-.+.-...+ ....+.|.+++|+.||..++..-.||.|.|=.++. ++.
T Consensus 101 ykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~ 180 (1189)
T KOG2041|consen 101 YKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGET 180 (1189)
T ss_pred ecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcE
Confidence 655322111 22456688899999988887777777664432221 110
Q ss_pred eE--------------------EEeecCCCCeEEEEEe--------CCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC
Q 004207 632 SL--------------------RTFTGHSTTVMSLDFH--------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683 (768)
Q Consensus 632 ~~--------------------~~~~~h~~~V~slafs--------p~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~ 683 (768)
.+ ..+......|..+.|. |+ .-.|++|-.+|.+.|..-.+......+..+-
T Consensus 181 hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtgm 259 (1189)
T KOG2041|consen 181 HLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTGM 259 (1189)
T ss_pred EEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEeccc
Confidence 00 0011122335666664 23 3467788888888877655555445555556
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 004207 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 763 (768)
Q Consensus 684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~ 763 (768)
.+....|+++|..+++++.+..-.- +..+ ..|.+|..-....-++......|++++|-..|-.++.+ .|+.
T Consensus 260 ~~vgakWnh~G~vLAvcG~~~da~~-~~d~-------n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsf 330 (1189)
T KOG2041|consen 260 KIVGAKWNHNGAVLAVCGNDSDADE-PTDS-------NKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSF 330 (1189)
T ss_pred EeecceecCCCcEEEEccCcccccC-cccc-------ceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-ecce
Confidence 7888999999999988886532100 0000 02334433333333555566678888887655444433 3455
Q ss_pred EE
Q 004207 764 VK 765 (768)
Q Consensus 764 V~ 765 (768)
|+
T Consensus 331 iy 332 (1189)
T KOG2041|consen 331 IY 332 (1189)
T ss_pred EE
Confidence 44
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.44 E-value=0.00011 Score=76.98 Aligned_cols=193 Identities=12% Similarity=0.139 Sum_probs=121.4
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCCeeEE-E
Q 004207 559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLR-T 635 (768)
Q Consensus 559 ~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fs-pdg~~LaTgs~DgtIrVWDl~t~~~~~~-~ 635 (768)
.+++|.+ ++.++++-...+.|+.|+..+++... +.... ...+++. +++ .|+.+..++ +.++|+.+++.... .
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence 3678988 67777777778999999998876653 32222 6777777 564 555555544 56669888754222 2
Q ss_pred ee--c-CCCCeEEEEEeCCCCeEEEEEeCC--------CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEE-EcC
Q 004207 636 FT--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIE 703 (768)
Q Consensus 636 ~~--~-h~~~V~slafsp~g~~lLaSgs~D--------g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llag-s~D 703 (768)
.. . .......+++.++|+ ++++.... |.|..++.. ++.......-.....++|+|+++.|+++ +..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 21 1 345688999999988 55554432 567888887 6666656556678899999999887755 467
Q ss_pred CeEEEEECCCceE-eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 704 NYISILDVETQVC-RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 704 g~I~IwD~~t~~~-~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.|..|++..... ..... .++++. ...+..-.+++..+|+++++.-..+.|.++|
T Consensus 156 ~~i~~~~~~~~~~~~~~~~--~~~~~~--------~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRR--VFIDFP--------GGPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp TEEEEEEEETTTCCEEEEE--EEEE-S--------SSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred ceeEEEeccccccceeeee--eEEEcC--------CCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 8888888864322 11100 111221 1123466788888887777666677777664
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.44 E-value=2.1e-06 Score=92.10 Aligned_cols=159 Identities=10% Similarity=0.130 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCC
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPD 630 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~----~~~tl~~h~~~V~sl~fspdg~~LaTgs~D---gtIrVWDl~t~~ 630 (768)
+..+..++++++||++..++...++++.... +...... ...-+++.|..+......+..- ..+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 4456678889999999888887777655432 2323322 2233455555554554444443 4455555554
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~--~~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
.+.....||-+.++.|+|+||+. ++++++.|..|++-....-..+..|. +...|..++.-++ ..|++++.|++|++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 33567788999999999999986 66699999999998776655555554 3456888888886 45899999999999
Q ss_pred EECCCceEeeecc
Q 004207 709 LDVETQVCRLKLQ 721 (768)
Q Consensus 709 wD~~t~~~~~~~~ 721 (768)
||+.++++.+.+.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999998876654
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.5e-05 Score=88.40 Aligned_cols=241 Identities=14% Similarity=0.175 Sum_probs=139.9
Q ss_pred CccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 004207 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (768)
Q Consensus 499 ~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~ 578 (768)
-+.+.+.+.||++-|....+.-|. +....-..+|+..+|...+.+.+++.....-.-+.||.|++|+|.-..| .
T Consensus 254 ~idfSP~EkYLVT~s~~p~~~~~~-----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-s 327 (698)
T KOG2314|consen 254 FIDFSPNEKYLVTYSPEPIIVEED-----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-S 327 (698)
T ss_pred eeecCCccceEEEecCCccccCcc-----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-e
Confidence 344567778888776544433331 2222344556666666666666655544444557899999999977664 6
Q ss_pred EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-------------------C--------------------
Q 004207 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-------------------R-------------------- 619 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-------------------g-------------------- 619 (768)
|.||+..+..++-.-...-..|....|+|.+.+||.=... .
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 9999877644432211123446666666666555442110 0
Q ss_pred ------------------cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC--CCcEEEEECCC-C---ee
Q 004207 620 ------------------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINN-G---SC 675 (768)
Q Consensus 620 ------------------tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~--Dg~I~iWDl~s-g---~~ 675 (768)
.+-|+.++....++... .-...|...+|.|.|+.+.+..+. ..+|.+|.+++ . +.
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 11122222111111111 134568888999998866554443 35788898873 2 22
Q ss_pred EEEEecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC
Q 004207 676 AGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN 752 (768)
Q Consensus 676 i~~~~~~~~i~sl~fsp~~~~llags~---Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg 752 (768)
+..+.. ...+.+.|+|.|+++++++. .|.+.+||.....+ +......| ...+.+.|.|.|
T Consensus 487 Vk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~---------------k~~~~~eh-~~at~veWDPtG 549 (698)
T KOG2314|consen 487 VKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL---------------KDTASPEH-FAATEVEWDPTG 549 (698)
T ss_pred hhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhh---------------hhccCccc-cccccceECCCC
Confidence 333332 45678999999999887753 56777777754111 11112233 235788999999
Q ss_pred CEEEEEECCCc
Q 004207 753 GMVASASHDKC 763 (768)
Q Consensus 753 ~~LaSgs~DG~ 763 (768)
+|+++++.-+.
T Consensus 550 RYvvT~ss~wr 560 (698)
T KOG2314|consen 550 RYVVTSSSSWR 560 (698)
T ss_pred CEEEEeeehhh
Confidence 99999986443
No 293
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=1.3e-05 Score=92.56 Aligned_cols=174 Identities=11% Similarity=0.125 Sum_probs=122.0
Q ss_pred CCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 504 ~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd 583 (768)
-++.+++-|..+|.|+++...... +....|+.. ..+|.+++||+.||+|.|-.
T Consensus 47 v~~~~~~~GtH~g~v~~~~~~~~~---------------------~~~~~~s~~------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 47 VHDKFFALGTHRGAVYLTTCQGNP---------------------KTNFDHSSS------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred hhcceeeeccccceEEEEecCCcc---------------------ccccccccc------ccCCceEEEecCCCcEEEee
Confidence 367899999999999988443221 111233332 45899999999999999999
Q ss_pred CCCCeEEEEeccCCCCEEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCCe-eEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207 584 TESFTVKSTLEEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLC 657 (768)
Q Consensus 584 l~t~~~~~tl~~h~~~V~sl~fspd-----g~~LaTgs~DgtIrVWDl~t~~~-~~~~~~~h~~~V~slafsp~g~~lLa 657 (768)
+.+.+...++. ...++.+|+++|+ .+.+++|+.-| +.++.-+--.. .-..+....++|.++.|.. .+++
T Consensus 100 l~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIA 174 (846)
T KOG2066|consen 100 LFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIA 174 (846)
T ss_pred ccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEEE
Confidence 88877776664 3468999999997 56899999888 77775432111 1124555678999999983 3676
Q ss_pred EEeCCCcEEEEECCCCeeEEEEecCC-------CeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 004207 658 SCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVE 712 (768)
Q Consensus 658 Sgs~Dg~I~iWDl~sg~~i~~~~~~~-------~i~sl~fsp~~~~llags~Dg~I~IwD~~ 712 (768)
-++ |--|+|||+.++..+..+.... ....+.|.++. . ++.+...+|+|..++
T Consensus 175 Wan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 175 WAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-R-LVIGWGDSVKICSIK 233 (846)
T ss_pred Eec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-e-EEEecCCeEEEEEEe
Confidence 665 4459999999888877766422 23567888763 3 344555678888776
No 294
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.39 E-value=3.4e-05 Score=85.08 Aligned_cols=204 Identities=15% Similarity=0.171 Sum_probs=131.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC---------------cEEEEECCCCeEEEEeccCCCC--EE-EEEEcCCCCEEEEEeC
Q 004207 556 SKVESCHFSPDGKLLATGGHDK---------------KAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA 617 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg---------------~I~VWdl~t~~~~~tl~~h~~~--V~-sl~fspdg~~LaTgs~ 617 (768)
..|..+.|+|.++||.+-+... .+.|||+.++.++..+..-..+ .+ -+.|+-+..++|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 3489999999999999876544 4999999999999998776655 55 67888888777665 4
Q ss_pred CCcEEEEECCCCCeeEEEeecC-CCCeEEEEEeCCCCe-EEEE-----EeCCCcEEEEECCCCeeEEEEec-CCCeeEEE
Q 004207 618 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 689 (768)
Q Consensus 618 DgtIrVWDl~t~~~~~~~~~~h-~~~V~slafsp~g~~-lLaS-----gs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~ 689 (768)
...++|+++ ++......+..- ...|....|+|.+++ .||. .+..+.+++|.+..++.+.+... ...-..+.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 456999997 333222212111 256788888887432 2332 35678899999987666554432 34456788
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE--CCCcEEEe
Q 004207 690 FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIW 767 (768)
Q Consensus 690 fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs--~DG~V~IW 767 (768)
|++.|.++++-..-. ..+++.-.....+.++++....+.......++|..++|.|.++.|++.+ .+-.+.++
T Consensus 230 W~~~g~~ll~l~~t~------~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 230 WQVLGKYLLVLVMTH------TKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVF 303 (561)
T ss_pred EecCCceEEEEEEEe------eecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeec
Confidence 999988876643211 1111111111245555555433333335678999999999998777665 34455444
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.39 E-value=1.8e-05 Score=98.98 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=109.9
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccC---------------CCCEEEEEEcCCCCEE-EEEeCCCc
Q 004207 558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---------------TQWITDVRFSPSLSRL-ATSSADRT 620 (768)
Q Consensus 558 I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h---------------~~~V~sl~fspdg~~L-aTgs~Dgt 620 (768)
-.+|+|+| ++.++++.+.++.|++||..++... .+.+. -.....|+|+|++..| ++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 35799999 5666777778899999998876543 22110 1234679999998855 45556789
Q ss_pred EEEEECCCCCeeEEE------------eecC--------CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe
Q 004207 621 VRVWDTENPDYSLRT------------FTGH--------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (768)
Q Consensus 621 IrVWDl~t~~~~~~~------------~~~h--------~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~ 680 (768)
|++||++++...+.. +..+ -....+++|+++|. ++++...++.|++||..++.+.....
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEec
Confidence 999999876532111 0000 11346889999986 77777889999999998876654332
Q ss_pred cC--------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207 681 CQ--------------SGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (768)
Q Consensus 681 ~~--------------~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~ 716 (768)
.. .....+++++++..+++-+.++.|++||+.+...
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 11 1356799999998777777899999999988654
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=9.9e-07 Score=92.72 Aligned_cols=156 Identities=14% Similarity=0.228 Sum_probs=113.3
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----CeeEE
Q 004207 561 CHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR 634 (768)
Q Consensus 561 l~fSpd--g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~----~~~~~ 634 (768)
|+|+-+ |-. ++.+.+-.|-+-|++++... .+. ..+.|.++.|.-.+++++.|+.+|.|.++|++.. ..+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 466542 323 55566778889999886543 333 4567999999988899999999999999999865 33333
Q ss_pred EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee---EEEEecCCC---eeEEEEecCCCEEEEEEcCCeEEE
Q 004207 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSG---ATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 635 ~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~---i~~~~~~~~---i~sl~fsp~~~~llags~Dg~I~I 708 (768)
.+. |.+.|+++.........|.+.+.+|+|++||+|.-++ +..+.+|.. -.-+.+++..+.+++++.|...+|
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 333 8889999987663334555778899999999998777 666664332 122445777888999999999999
Q ss_pred EECCCceEeeec
Q 004207 709 LDVETQVCRLKL 720 (768)
Q Consensus 709 wD~~t~~~~~~~ 720 (768)
|.++.+.....+
T Consensus 373 Wsl~~ghLl~ti 384 (425)
T KOG2695|consen 373 WSLDSGHLLCTI 384 (425)
T ss_pred EecccCceeecc
Confidence 999887665443
No 297
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=0.00039 Score=74.32 Aligned_cols=157 Identities=12% Similarity=0.166 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEEE--EeccCCCC----------EEEEEEcCCCCEEEEEeCC-CcEE
Q 004207 558 VESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKS--TLEEHTQW----------ITDVRFSPSLSRLATSSAD-RTVR 622 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~-Dg~I~VWdl~t-~~~~~--tl~~h~~~----------V~sl~fspdg~~LaTgs~D-gtIr 622 (768)
-+.++++++|++|+++.. .|.|.|+-+.. +.+.. ....|.+. +.+..|.|++++|++++-. ..|.
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 377999999999888864 57899998865 33221 12235444 8889999999999887542 3699
Q ss_pred EEECCCCCeeEE--EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC--e--eEEEEe-------cCCCeeEEE
Q 004207 623 VWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--S--CAGVFK-------CQSGATQMR 689 (768)
Q Consensus 623 VWDl~t~~~~~~--~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg--~--~i~~~~-------~~~~i~sl~ 689 (768)
+|+++.+..... ....-......|.|||+++...+++--+++|-+|..... + .+..+. .......+.
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 999997653221 111334567899999999988889999999999998763 2 222221 234467889
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCc
Q 004207 690 FQPRLGRILAAAI-ENYISILDVETQ 714 (768)
Q Consensus 690 fsp~~~~llags~-Dg~I~IwD~~t~ 714 (768)
++++|++|+++.. .+.|.+|.+...
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999888763 457888877543
No 298
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.1e-06 Score=88.49 Aligned_cols=218 Identities=16% Similarity=0.146 Sum_probs=132.7
Q ss_pred eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Q 004207 546 TEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrV 623 (768)
+....+..|...|..++|||..+ ++..++.+.+|+|.|+++..++..+..+ ..+++++|.-| .++|+.|...|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 33456788899999999999766 8889999999999999999999888887 68999999886 557788888999999
Q ss_pred EECCCCCeeEEEeec--CCCCeEEEEEe------CCCCeEEEEEeCCCcEEEEECCC----CeeEEEEecCCCeeEEEEe
Q 004207 624 WDTENPDYSLRTFTG--HSTTVMSLDFH------PSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQ 691 (768)
Q Consensus 624 WDl~t~~~~~~~~~~--h~~~V~slafs------p~g~~lLaSgs~Dg~I~iWDl~s----g~~i~~~~~~~~i~sl~fs 691 (768)
||++..+..+..+.+ ...+|..|+.- +.|. +++.... .+.+|.+.. ..++..+...+...++.++
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~ 339 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYH 339 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeec
Confidence 999987754444433 12344444332 2333 3333322 355565532 2222333334444555555
Q ss_pred cCCCEEEEEEcC-----------------CeEEEEECCCc---------------------eEee----ecceeEEeecC
Q 004207 692 PRLGRILAAAIE-----------------NYISILDVETQ---------------------VCRL----KLQTLELWNMT 729 (768)
Q Consensus 692 p~~~~llags~D-----------------g~I~IwD~~t~---------------------~~~~----~~~~I~iwd~~ 729 (768)
+..+.+++.... ....||..+.. ..+. .-..+.+||..
T Consensus 340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~ 419 (463)
T KOG1645|consen 340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH 419 (463)
T ss_pred CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence 544444443322 00111211110 0000 01156778877
Q ss_pred CCceEEeccCCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 004207 730 ENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK 768 (768)
Q Consensus 730 ~~~~~~l~~H~~~I~sla~spd--g~~LaSgs~DG~V~IWD 768 (768)
+.+++....-+.+|.+++.... +.||++-. |..|+||+
T Consensus 420 s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 420 SFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred hhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 7776655555677888776533 34666655 44677763
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.7e-06 Score=93.74 Aligned_cols=210 Identities=14% Similarity=0.140 Sum_probs=145.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN 628 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t---~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-DgtIrVWDl~t 628 (768)
-|.+.|+.|... -.+++++++.||.++.|.-.. -+.+..+..|...|.+++.+-++.+++|.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 477777766543 577999999999999997443 2344556778889999999999999999877 99999999987
Q ss_pred CCee-EEEeecCCCCeEEEEEeCCCC----eEEEEEeCCCcEEEEECCCCeeE-EEEe--cCCCeeEEEEecCCCEEEEE
Q 004207 629 PDYS-LRTFTGHSTTVMSLDFHPSKE----DLLCSCDNNSEIRYWSINNGSCA-GVFK--CQSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 629 ~~~~-~~~~~~h~~~V~slafsp~g~----~lLaSgs~Dg~I~iWDl~sg~~i-~~~~--~~~~i~sl~fsp~~~~llag 700 (768)
-... ...+..-.+. ++|..... .+.++.-.++.|.|+|-+...|. ..++ +..+|.++.+.+.+..+++.
T Consensus 86 ~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred cchhhhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 5431 1111111222 22222111 23444556899999998765532 2222 46789999999999999999
Q ss_pred EcCCeEEEEECCCceEeeecceeEEeecCCCc-eEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 701 AIENYISILDVETQVCRLKLQTLELWNMTENK-TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 701 s~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~-~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
...|.|..|..+.. ....+.-.-|.+.... ++.+........++.|+|++..+.+-+.|..|++++
T Consensus 163 D~~gmVEyWs~e~~--~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 163 DISGMVEYWSAEGP--FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred cccceeEeecCCCc--ccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence 99999999988741 1111111234443332 234556677889999999999999999999999873
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.33 E-value=0.00018 Score=74.81 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=106.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-------CCCCEEEEEEcCC------CCEEEEEeCCCcEEE
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRV 623 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-------h~~~V~sl~fspd------g~~LaTgs~DgtIrV 623 (768)
.-.-++||||+.+||.+...|+|+|||+... .+..+.. -...|..+.|.+- ...|++...+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 3456899999999999999999999998753 3334322 2345777777542 225777778988887
Q ss_pred EECCCC---C-eeE--EEeec-CCCCeEEEEEeCCCCeEEEEEeCCC----------cEEEEECCCCeeE----------
Q 004207 624 WDTENP---D-YSL--RTFTG-HSTTVMSLDFHPSKEDLLCSCDNNS----------EIRYWSINNGSCA---------- 676 (768)
Q Consensus 624 WDl~t~---~-~~~--~~~~~-h~~~V~slafsp~g~~lLaSgs~Dg----------~I~iWDl~sg~~i---------- 676 (768)
|-+..+ + ... ..+.. +...|.++.++|..+.+++.|.... -+..|.+-++.+-
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~ 203 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD 203 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence 775321 1 111 22222 4678999999999776665554322 3556654322110
Q ss_pred -----------E-----EEe----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207 677 -----------G-----VFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (768)
Q Consensus 677 -----------~-----~~~----~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~ 716 (768)
+ .+. ....|..|..+|++..|++...+|.|.+|++.+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 0 010 145688899999999999999999999999987654
No 301
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.32 E-value=0.00015 Score=80.21 Aligned_cols=203 Identities=16% Similarity=0.163 Sum_probs=127.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEeccCCCCEEEEEEcCCC--CEEEE-----EeCCCcEEEEECCC
Q 004207 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSL--SRLAT-----SSADRTVRVWDTEN 628 (768)
Q Consensus 560 sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~----~tl~~h~~~V~sl~fspdg--~~LaT-----gs~DgtIrVWDl~t 628 (768)
-+.|+-+.+|+|-.. ...++|+++ +.... ..++ ...|....|+|.+ ..||+ ...++.++||.+..
T Consensus 136 ~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~ 211 (561)
T COG5354 136 VLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK 211 (561)
T ss_pred eeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC
Confidence 578888888776442 246999996 33322 2222 3568888999963 33444 35577899999875
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe----------CCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEE
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 698 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs----------~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~ll 698 (768)
+.. +.+..-....-..+.|++.|+.+++-.. .+..+.+++++...+.......++|..++|.|.+..++
T Consensus 212 ~s~-l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~ 290 (561)
T COG5354 212 NSV-LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFA 290 (561)
T ss_pred CCe-eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCcee
Confidence 553 2221111222345789999887766332 13568888888554444445578999999999988766
Q ss_pred EEE--cCCeEEEEECCCceEeeecc--------------------------eeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207 699 AAA--IENYISILDVETQVCRLKLQ--------------------------TLELWNMTENKTLTLSAHDKLVSSLAAST 750 (768)
Q Consensus 699 ags--~Dg~I~IwD~~t~~~~~~~~--------------------------~I~iwd~~~~~~~~l~~H~~~I~sla~sp 750 (768)
+++ .+-.+.+||++.... ..+. .+.+||......+.-.-......-+.|+|
T Consensus 291 vi~g~~pa~~s~~~lr~Nl~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wsp 369 (561)
T COG5354 291 VISGYMPASVSVFDLRGNLR-FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSP 369 (561)
T ss_pred EEecccccceeecccccceE-EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccC
Confidence 554 677888888877522 2111 56667665544332111112234567999
Q ss_pred CCCEEEEEE------CCCcEEEeC
Q 004207 751 VNGMVASAS------HDKCVKIWK 768 (768)
Q Consensus 751 dg~~LaSgs------~DG~V~IWD 768 (768)
++.++.+.. .|..|+|||
T Consensus 370 d~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 370 DGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred CceEEEecCCCcccccCcceEEEE
Confidence 999887764 478899996
No 302
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=0.00012 Score=83.05 Aligned_cols=162 Identities=12% Similarity=0.066 Sum_probs=101.9
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCC
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~-LaTgs~D---gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g 652 (768)
..|.+-|.+......... .. .+...+|+||++. ++..+.+ ..|+++|+.+++. ..+....+.+.+..|+|||
T Consensus 169 ~~l~~~d~dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 356665665444332333 33 6788999999984 6654444 4689999988764 3333345567778899999
Q ss_pred CeEEEEEeCC--CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCceEeeecceeEEee
Q 004207 653 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQTLELWN 727 (768)
Q Consensus 653 ~~lLaSgs~D--g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D-g--~I~IwD~~t~~~~~~~~~I~iwd 727 (768)
+.++++.+.+ ..|.++|+.++................|+|+|..|+..+.. + .|+++|+.++.
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~------------ 312 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS------------ 312 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC------------
Confidence 9888776654 46888898887755444333334556899999988877743 2 35555555433
Q ss_pred cCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 728 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 728 ~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
...+..... ....|+|+|++|+..+..
T Consensus 313 -----~~rlt~~g~--~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 313 -----VEQVVFHGK--NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred -----eEeCccCCC--cCceECCCCCEEEEEEcC
Confidence 221111111 124899999988776643
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.30 E-value=0.00019 Score=76.58 Aligned_cols=201 Identities=15% Similarity=0.166 Sum_probs=132.8
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCeEEEEeccCCCCEE--EEEEcCCCCEEEEEeC-----CCcEEEEECC
Q 004207 557 KVESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWIT--DVRFSPSLSRLATSSA-----DRTVRVWDTE 627 (768)
Q Consensus 557 ~I~sl~fSp-dg~~LaSgs~Dg~-I~VWdl~t~~~~~tl~~h~~~V~--sl~fspdg~~LaTgs~-----DgtIrVWDl~ 627 (768)
....++.+| +...++.+-.-|+ ..+||..+++....+....+.-. ..+|++||++|+|.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345678888 5556667766665 67899999998877754433322 3579999999999754 4789999999
Q ss_pred CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe-----------------CCCcEEEEECCCCeeEEEEec-----CCCe
Q 004207 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFKC-----QSGA 685 (768)
Q Consensus 628 t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs-----------------~Dg~I~iWDl~sg~~i~~~~~-----~~~i 685 (768)
.+-..+..+..|.-....|.+.|+++.|++.-+ .+..+.+.|.++|+.+..... .-.+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 555557788888777888999999976665421 123566778888888777553 2358
Q ss_pred eEEEEecCCCEEEEEEcCCe-------EEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE
Q 004207 686 TQMRFQPRLGRILAAAIENY-------ISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 758 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~-------I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg 758 (768)
..+++.+++..++..-..+. |.+++.... +......... ...-...|-+|+++.++.+|++.
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--------~~~~~~p~~~---~~~l~~Y~gSIa~~~~g~~ia~t 234 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--------LRLLPAPEEQ---WRRLNGYIGSIAADRDGRLIAVT 234 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--------ceeccCChHH---HHhhCCceEEEEEeCCCCEEEEE
Confidence 88899998766555544432 222221110 1111111111 12335678999999999887666
Q ss_pred E-CCCcEEEeC
Q 004207 759 S-HDKCVKIWK 768 (768)
Q Consensus 759 s-~DG~V~IWD 768 (768)
| .-+.+.+||
T Consensus 235 sPrGg~~~~~d 245 (305)
T PF07433_consen 235 SPRGGRVAVWD 245 (305)
T ss_pred CCCCCEEEEEE
Confidence 5 567888885
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.30 E-value=3.2e-06 Score=86.00 Aligned_cols=95 Identities=15% Similarity=0.339 Sum_probs=73.9
Q ss_pred cEEEEECCCCeEEEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEE
Q 004207 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lL 656 (768)
..++|+++-.+.+..-......|.+++-+|. ...+++|+.||.|-+||.+....+...+..|+.+|+.+.|||....-|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 4556665443322111122334999999995 567888899999999999998887888999999999999999877777
Q ss_pred EEEeCCCcEEEEECCC
Q 004207 657 CSCDNNSEIRYWSINN 672 (768)
Q Consensus 657 aSgs~Dg~I~iWDl~s 672 (768)
++|++||.+.-||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 7999999999999873
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.29 E-value=5.2e-05 Score=77.66 Aligned_cols=188 Identities=13% Similarity=0.057 Sum_probs=119.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~-tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V 643 (768)
...+||.|+..|...+|...+.+... ....|...|+-+.=.. ....+..++.|.++++.+++.+.......... -.+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~-~~~ 161 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN-LTQ 161 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-cce
Confidence 34579999999999999988655432 3333433333222111 12357778899999999987654322222211 238
Q ss_pred EEEEEeCCCCeEEEEEeCCCcEEEEECCCCe--eEEEE--ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVF--KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 644 ~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--~i~~~--~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
.+++++++++.+.++ +....|.+|.+.... .+.+. .....-.+..|+.....++++..||++.|||++.......
T Consensus 162 ns~~~snd~~~~~~V-gds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSV-GDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeEEcCCCceEEEe-cCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 899999998855544 456789999886532 22212 2345567789999989999999999999999987544322
Q ss_pred cceeEEeecCCCceEEeccCCCCeeEEEEeCCCC--EEEEEECCCcEEE
Q 004207 720 LQTLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVKI 766 (768)
Q Consensus 720 ~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~--~LaSgs~DG~V~I 766 (768)
.. ..+-..|.+.|..+.|++.|. +|+..-.=+.+.|
T Consensus 241 ~~-----------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 241 EI-----------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred hh-----------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 11 112336889999999998653 4443333334443
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.29 E-value=2.1e-06 Score=62.79 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=36.9
Q ss_pred CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 587 ~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
++++.++.+|...|++|+|+|++.+|++++.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=1e-05 Score=93.01 Aligned_cols=207 Identities=16% Similarity=0.137 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe-eEEEe
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF 636 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~-~~~~~ 636 (768)
++++||+|..-.|+.|-.-|.+.||...+.+.......|..+|..+.|+++|..|+|+..-|.|.+|..+.... ....+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 66799999998999999999999999888777777778999999999999999999999999999998762111 00000
Q ss_pred ecCC--CCeEE--------------------------EE----E-------------eCCCCeEEEEEeCCCcEEEEECC
Q 004207 637 TGHS--TTVMS--------------------------LD----F-------------HPSKEDLLCSCDNNSEIRYWSIN 671 (768)
Q Consensus 637 ~~h~--~~V~s--------------------------la----f-------------sp~g~~lLaSgs~Dg~I~iWDl~ 671 (768)
..|. ..++- ++ | .|+| ..|+.++.+|+|+..|-
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g-~~F~~~~~~GtVyyvdq- 219 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKG-TEFLFAGKSGTVYYVDQ- 219 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCC-cEEEEEcCCceEEEEcC-
Confidence 0010 00111 11 1 1232 34556666777776663
Q ss_pred CCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CceEeeecceeEEeecCCCc-----------eE----E
Q 004207 672 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQTLELWNMTENK-----------TL----T 735 (768)
Q Consensus 672 sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~-t~~~~~~~~~I~iwd~~~~~-----------~~----~ 735 (768)
.|.+..+.+..+. ..+.|.+...-+++...+-.+.+|-+. ++...... .+++--...++ ++ .
T Consensus 220 ~g~~~~V~k~dS~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~-~vk~sgk~GgrqGgiA~sEssGvLr~~eK 297 (1416)
T KOG3617|consen 220 NGRQRTVHKLDSE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERC-AVKVSGKLGGRQGGIACSESSGVLRKSEK 297 (1416)
T ss_pred CCcEEEEEEccch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhh-hhhhccccCCccCccccccccccccCCcc
Confidence 3556555554333 234455544444444444443333221 11110000 00000000000 00 0
Q ss_pred e-ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 736 L-SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 736 l-~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+ ......++|++++..+..|+.|...|.|.+|.
T Consensus 298 yg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 298 YGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred hhhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence 1 12345799999999999999999999999994
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=0.00014 Score=83.68 Aligned_cols=211 Identities=13% Similarity=0.156 Sum_probs=142.5
Q ss_pred CCceEEEEecCCCCcccccCccccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeE
Q 004207 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (768)
Q Consensus 480 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~ 559 (768)
.....+.|.+........+.. ...-+||++...|.|-+|+..... .+..+..|.++|-
T Consensus 56 s~V~~VrWap~~~p~~llS~~---~~~lliAsaD~~GrIil~d~~~~s-------------------~~~~l~~~~~~~q 113 (1062)
T KOG1912|consen 56 SAVTSVRWAPAPSPRDLLSPS---SSQLLIASADISGRIILVDFVLAS-------------------VINWLSHSNDSVQ 113 (1062)
T ss_pred cceeEEEeccCCCchhccCcc---ccceeEEeccccCcEEEEEehhhh-------------------hhhhhcCCCcchh
Confidence 567777888776532222211 245678888889999999654331 1334567888899
Q ss_pred EEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----
Q 004207 560 SCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENP----- 629 (768)
Q Consensus 560 sl~fSp---dg-~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~t~----- 629 (768)
.++|-+ +. .+|+.-....+|.+|+..+|+.+...........|+.+.| |.+.|+.-+..|.|.+.+.-..
T Consensus 114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~ 193 (1062)
T KOG1912|consen 114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV 193 (1062)
T ss_pred heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC
Confidence 999977 34 3566666678999999999999988876667788899999 6777888788888887775321
Q ss_pred -CeeEEEeecCCC----------------C---------eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC-
Q 004207 630 -DYSLRTFTGHST----------------T---------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ- 682 (768)
Q Consensus 630 -~~~~~~~~~h~~----------------~---------V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~- 682 (768)
.........|.. . ...++|+|..+++++..- ...+.++|++-..++.++..+
T Consensus 194 pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-prellv~dle~~~~l~vvpier 272 (1062)
T KOG1912|consen 194 PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-PRELLVFDLEYECCLAVVPIER 272 (1062)
T ss_pred CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-ccceEEEcchhhceeEEEEecc
Confidence 111222222221 0 122456887666654443 678999999988888877753
Q ss_pred CCeeEEEEecCCC--EEEEEEcCCeEEEEECCC
Q 004207 683 SGATQMRFQPRLG--RILAAAIENYISILDVET 713 (768)
Q Consensus 683 ~~i~sl~fsp~~~--~llags~Dg~I~IwD~~t 713 (768)
+++.-+.+.|+.. .+++.-.||.+.||-.+.
T Consensus 273 ~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 273 GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 3455566666554 588888999999986654
No 309
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.28 E-value=0.0002 Score=88.46 Aligned_cols=199 Identities=14% Similarity=0.203 Sum_probs=129.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE----ECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE- 627 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VW----dl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~- 627 (768)
...+.|.++.|-++...++.+..+|.|.++ +..+.... ....-...|.+++||||+..|+.++.+++|.+-+-+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345779999999999999999999999999 55443322 122234679999999999999999999888765422
Q ss_pred -----------C-CC-eeE--------EEeec------------------------CCCCeEEEEEeCCCCeEEEEEe--
Q 004207 628 -----------N-PD-YSL--------RTFTG------------------------HSTTVMSLDFHPSKEDLLCSCD-- 660 (768)
Q Consensus 628 -----------t-~~-~~~--------~~~~~------------------------h~~~V~slafsp~g~~lLaSgs-- 660 (768)
. +. ..+ ..|.| +...-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 00 000 00000 2234567889999986555443
Q ss_pred CC---CcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCceEeeecceeEEeecCCCce
Q 004207 661 NN---SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQTLELWNMTENKT 733 (768)
Q Consensus 661 ~D---g~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags~---Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~ 733 (768)
.+ ..|+||+-+ |....+-+. .+--.+++|.|.|+.|++... ...|.+|.-+..+.. .+ +
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg-eF------~------ 297 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG-EF------T------ 297 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee-eE------e------
Confidence 22 579999965 665544432 233457899999987777664 234555554332211 00 0
Q ss_pred EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 734 LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 734 ~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+.+......|..+.|++++.+||..-.|. |.+|
T Consensus 298 l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW 330 (928)
T PF04762_consen 298 LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLW 330 (928)
T ss_pred cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence 11123456789999999999999988665 8888
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.25 E-value=0.00023 Score=73.52 Aligned_cols=179 Identities=13% Similarity=0.068 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC---CC
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TT 642 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~---~~ 642 (768)
++.++++++.++.|+.||..+++.+..+... ..+.... ...+..+++++.++.|+.+|..+++..-....... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 5677888889999999999999999887652 2221111 22355677777889999999999886333222221 11
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe------------eEEEEecCCCEEEEEEcCCeEEEEE
Q 004207 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------------TQMRFQPRLGRILAAAIENYISILD 710 (768)
Q Consensus 643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i------------~sl~fsp~~~~llags~Dg~I~IwD 710 (768)
...+.....++ .++++..++.|..+|+++|+.+......... ..+.+. + +.+++++.++.+..+|
T Consensus 113 ~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 113 RSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-D-GRVYVSSGDGRVVAVD 189 (238)
T ss_dssp B--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-T-TEEEEECCTSSEEEEE
T ss_pred ccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-C-CEEEEEcCCCeEEEEE
Confidence 12222222245 4446666899999999999998887763311 122222 3 3777777777544448
Q ss_pred CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+.++... |... ...+..+ ...++..|++++.++.|.+||
T Consensus 190 ~~tg~~~--------w~~~----------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 190 LATGEKL--------WSKP----------ISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp TTTTEEE--------EEEC----------SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCCCCEE--------EEec----------CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 8876532 3211 1112221 345677888888889998886
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.24 E-value=3.6e-06 Score=61.53 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=35.9
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 546 ~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd 583 (768)
+.+..+.+|.+.|++|+|+|++.+|++++.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788899999999999999999999999999999997
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.24 E-value=1.9e-05 Score=91.98 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=117.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEE
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWD 625 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---------DgtIrVWD 625 (768)
.+.|+-++. +++++.+|...|+|.+-|..+.+.+.++..|++.|.++... |+.|++|+. |..|+|||
T Consensus 177 a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 177 ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhh
Confidence 334666665 68899999999999999999999999999999999876665 889999987 55789999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEE---CCCC--eeEEEEecCCCeeEEEEecCCCEEEEE
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNG--SCAGVFKCQSGATQMRFQPRLGRILAA 700 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWD---l~sg--~~i~~~~~~~~i~sl~fsp~~~~llag 700 (768)
++..+. +..+.-+.++ .-+.|+|.-...+|+++..|...+.| +.+. ...........+..+++++++..++.+
T Consensus 253 LRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafg 330 (1118)
T KOG1275|consen 253 LRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFG 330 (1118)
T ss_pred hhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEe
Confidence 987553 3333333333 55788998777888888899999999 3332 122222335569999999999999999
Q ss_pred EcCCeEEEEEC
Q 004207 701 AIENYISILDV 711 (768)
Q Consensus 701 s~Dg~I~IwD~ 711 (768)
..+|.|.+|.-
T Consensus 331 d~~g~v~~wa~ 341 (1118)
T KOG1275|consen 331 DHEGHVNLWAD 341 (1118)
T ss_pred cccCcEeeecC
Confidence 99999999974
No 313
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=8.4e-05 Score=82.65 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=93.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEECC
Q 004207 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 627 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~-----------DgtIrVWDl~ 627 (768)
+-+.|||.|.||+|-..-| |.+|--++...+..+. |.+ |.-+.|||..+||+|=+. ...|+|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 4589999999999987765 9999877766666663 654 899999999999999654 2479999999
Q ss_pred CCCeeEEEeec--CCCCe-EEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEecCCCEEEE
Q 004207 628 NPDYSLRTFTG--HSTTV-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 699 (768)
Q Consensus 628 t~~~~~~~~~~--h~~~V-~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp~~~~lla 699 (768)
+|.. .+.+.. ....+ .-+.|+.|++++.... ...|.||+..+..++..-.. -.+|....|+|.+..|+.
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 9875 444443 22222 3357998877444333 35799998876443321111 355777778887655443
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=3.5e-05 Score=89.07 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=106.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~ 634 (768)
.+.|+|++++ +++|+-|..+|.|++++... .. .+...|... ..+|.+++||+.||+|.|-.+-+.+. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 3558888884 78999999999999998764 33 444456543 56799999999999999999887664 33
Q ss_pred EeecCCCCeEEEEEeCC----CCeEEEEEeCCCcEEEEECC---CCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 004207 635 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 707 (768)
Q Consensus 635 ~~~~h~~~V~slafsp~----g~~lLaSgs~Dg~I~iWDl~---sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~ 707 (768)
.+. ...++.+|+++|+ ....+++|+.-| +.++.-+ +...+..-...+.|.++.|..+ +++.+. |-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~--lIAWan-d~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN--LIAWAN-DDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc--EEEEec-CCCcE
Confidence 333 3468999999998 234567888777 7666532 2222322334788999999854 555554 55599
Q ss_pred EEECCCceEeeec
Q 004207 708 ILDVETQVCRLKL 720 (768)
Q Consensus 708 IwD~~t~~~~~~~ 720 (768)
|||+.+...+..+
T Consensus 183 vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 183 VYDTPTRQRLTNI 195 (846)
T ss_pred EEeccccceeecc
Confidence 9999887665544
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.16 E-value=0.00043 Score=73.88 Aligned_cols=155 Identities=12% Similarity=0.098 Sum_probs=105.8
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECC-CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC-----------------
Q 004207 561 CHFSPDGKLLATGGH-----DKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------------- 617 (768)
Q Consensus 561 l~fSpdg~~LaSgs~-----Dg~I~VWdl~-t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~----------------- 617 (768)
-+||+||++|++.-. .|.|-|||.. +...+..+..|.-.-..+.+.||++.|+++-.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 579999999998733 5789999998 77888888877766778999999988887632
Q ss_pred -CCcEEEEECCCCCeeEE-Ee--ecCCCCeEEEEEeCCCCeEEEEEeCCC-------cEEEEECCCCeeEEEEe------
Q 004207 618 -DRTVRVWDTENPDYSLR-TF--TGHSTTVMSLDFHPSKEDLLCSCDNNS-------EIRYWSINNGSCAGVFK------ 680 (768)
Q Consensus 618 -DgtIrVWDl~t~~~~~~-~~--~~h~~~V~slafsp~g~~lLaSgs~Dg-------~I~iWDl~sg~~i~~~~------ 680 (768)
+-.+...|..+++..-+ .+ .-|...|..+++.++|. +++.+-..| .|.+++. +..+..+.
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQW 212 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHH
Confidence 12344555566654222 23 33667899999999876 333433222 1333332 33233232
Q ss_pred --cCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEee
Q 004207 681 --CQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRL 718 (768)
Q Consensus 681 --~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~ 718 (768)
....+-+|+++.++..+++++ ..+.+.+||..++..+.
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 246789999999998876666 57788999988876654
No 316
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.05 E-value=0.00029 Score=79.69 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=79.8
Q ss_pred eEEEEEcC-CCCEEEEE----eCCCc----EEEEECCCCeEEE---EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 558 VESCHFSP-DGKLLATG----GHDKK----AVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 558 I~sl~fSp-dg~~LaSg----s~Dg~----I~VWdl~t~~~~~---tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
..++.||. +...+.|. +.+|. -++|++...+... +-......|.|++++|+...|+.|+.||+|++||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 36677776 33334433 33443 3456665443321 1124667899999999999999999999999999
Q ss_pred CCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe
Q 004207 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (768)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~ 674 (768)
...+. ..+....-.++.++|||+|. +|++|+..|.|.+||+.-..
T Consensus 288 ~~~~~---t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 288 TTRGV---TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCCe---eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence 97653 22333456688999999987 77789989999999987443
No 317
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=7.9e-06 Score=86.10 Aligned_cols=128 Identities=17% Similarity=0.253 Sum_probs=99.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eEEEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~-----~~~~tl~~h~~~V~sl~fsp-dg~~LaTgs~DgtIrVWDl~ 627 (768)
..+.|.++.|.-.+.+++.|+..|.|.++|++.. .+...+ -|...|+++..-. ++.+|++.+-+|+|++||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 3466889999988999999999999999999864 344444 4888999998766 67899999999999999998
Q ss_pred CCCe--eEEEeecCCCCeEEEE--EeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC
Q 004207 628 NPDY--SLRTFTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683 (768)
Q Consensus 628 t~~~--~~~~~~~h~~~V~sla--fsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~ 683 (768)
..++ .+..+.+|-..-.-+- .++... ++++++.|...+||.++++..+.++....
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred hhhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccCceeeccCCCC
Confidence 5442 3678888865443333 344444 56678889999999999999998887643
No 318
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.02 E-value=0.0016 Score=73.15 Aligned_cols=176 Identities=11% Similarity=0.044 Sum_probs=106.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCC-------CEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCeeEEEeec
Q 004207 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (768)
Q Consensus 568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~-------~V~sl~fsp--dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~ 638 (768)
..++.++.++.+..+|.++++.+........ ....+.-+| .+..++.++.+|.+..+|+.+++..-..-.
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~- 284 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY- 284 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-
Confidence 3566677888999999998887765431110 011111223 245777788899999999998875222111
Q ss_pred CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 004207 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (768)
Q Consensus 639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~ 716 (768)
.....+.. .+..+ +.++.+|.|..+|..+++.+..... .....+..+ .++++++++.+|.|+++|..+++.
T Consensus 285 --~~~~~~~~--~~~~v-y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 285 --GSVNDFAV--DGGRI-YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred --CCccCcEE--ECCEE-EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 11222222 23434 4566799999999999987664432 112222222 256889999999999999988765
Q ss_pred eeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 717 RLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 717 ~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
..... + ..........+. ++.|+.++.||.|+.++
T Consensus 358 ~~~~~------~---------~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 358 VAQQK------V---------DSSGFLSEPVVA--DDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEEEE------c---------CCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence 43221 1 011111122222 55788999999998764
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00078 Score=78.75 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=117.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC-EEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC-
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENP- 629 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~-V~sl~fspdg~~LaTgs~Dg-----tIrVWDl~t~- 629 (768)
.|+| |++.+..+|.|+.||.|.+++- ..+.+..+..+... |..+.....-.+|++.+.|+ .|+|||++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 5678889999999999999874 34555677777666 44443333346888887776 4999998643
Q ss_pred --C--eeE---EEee----cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC---C-C-eeEEEEecCCCeeEEEEecC
Q 004207 630 --D--YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N-G-SCAGVFKCQSGATQMRFQPR 693 (768)
Q Consensus 630 --~--~~~---~~~~----~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~---s-g-~~i~~~~~~~~i~sl~fsp~ 693 (768)
. .++ +.+. ....++.+++.+.+- ..+|+|-.+|.|.++.-. . + +.........+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 1 122 2221 124678889999884 467788889999988421 1 1 22233345788999999888
Q ss_pred CCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEE
Q 004207 694 LGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 694 ~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs 759 (768)
+..++.+..-..|.+|.+...... ...+..|...++|..+++....|++++
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~---------------~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPS---------------LKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcc---------------eeeeccCCccceeeecCCCCccEEEec
Confidence 877555555667888887643311 112335555666666665544344443
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.96 E-value=0.0022 Score=66.08 Aligned_cols=147 Identities=11% Similarity=0.044 Sum_probs=93.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~---~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~ 641 (768)
++..+++++.|+.|+.+|..+++.+... .... ..........++..++.+..++.|..+|+++++. +-.......
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~ 153 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-LWKYPVGEP 153 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE-EEEEESSTT
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE-EEEeecCCC
Confidence 4556667778889999999999999884 3221 1112222222377888888899999999999876 433333321
Q ss_pred C----------eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207 642 T----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (768)
Q Consensus 642 ~----------V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~ 711 (768)
. +.+-....++ .++ .++.++.+..+|+.+++.+.... ...+.. .....++.+++++.++.|.+||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVY-VSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEE-EECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred CCCcceeeecccccceEEECC-EEE-EEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 1 1122222233 444 55656654444999999765333 233332 24567788888889999999999
Q ss_pred CCceEe
Q 004207 712 ETQVCR 717 (768)
Q Consensus 712 ~t~~~~ 717 (768)
++++..
T Consensus 230 ~tG~~~ 235 (238)
T PF13360_consen 230 KTGKVV 235 (238)
T ss_dssp TTTEEE
T ss_pred CCCCEE
Confidence 998764
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.96 E-value=0.00032 Score=79.40 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=64.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~ 630 (768)
.....|.|++++|+.+.|+.|+.||.|++||...+....+ ...-.++.++|+|+|.+|++|+..|.|.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 4567899999999999999999999999999876543322 344567899999999999999999999999987543
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.94 E-value=0.0023 Score=72.03 Aligned_cols=146 Identities=10% Similarity=0.003 Sum_probs=90.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCC---
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT--- 642 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~--- 642 (768)
++..++.++.++.|+.+|.++++.+...........+.... +..++.++.++.|..+|.++++. +-.+......
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~ 195 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAV-KWTVNLDVPSLTL 195 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCE-eeeecCCCCcccc
Confidence 45667778889999999999999988775433211111222 45677788899999999999875 3222211100
Q ss_pred --eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCC--------eeEEEEec--CCCEEEEEEcCCeEEEEE
Q 004207 643 --VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILD 710 (768)
Q Consensus 643 --V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~--------i~sl~fsp--~~~~llags~Dg~I~IwD 710 (768)
..+.... +. .++.++.++.+..+|..+|+.+........ ...+..+| .++.+++++.++.+..+|
T Consensus 196 ~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 196 RGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred cCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 0111111 12 344566789999999999987765542111 00111111 246778888889999999
Q ss_pred CCCceEe
Q 004207 711 VETQVCR 717 (768)
Q Consensus 711 ~~t~~~~ 717 (768)
..+++..
T Consensus 273 ~~tG~~~ 279 (394)
T PRK11138 273 LRSGQIV 279 (394)
T ss_pred CCCCCEE
Confidence 8887544
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.89 E-value=0.00037 Score=80.65 Aligned_cols=149 Identities=11% Similarity=0.046 Sum_probs=103.7
Q ss_pred EcCCCCEEEE-EeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC------------------------
Q 004207 563 FSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------------------------ 617 (768)
Q Consensus 563 fSpdg~~LaS-gs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~------------------------ 617 (768)
+++||+.+.. .-..+.+.+.|.++.+....+.... ....+.++++++++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 3456654432 2334567777888777776664332 3456777888877777652
Q ss_pred ----------------CCcEEEEECCC----CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe---
Q 004207 618 ----------------DRTVRVWDTEN----PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--- 674 (768)
Q Consensus 618 ----------------DgtIrVWDl~t----~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~--- 674 (768)
+++|.|.|..+ +...+..+. -......|+++|||+++++++..+.+|.|+|+.+.+
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 24577777776 222233333 445678899999999999999999999999998744
Q ss_pred ---------eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 675 ---------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 675 ---------~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
.+......-.....+|.++|..+.+..-|..|..||+.+
T Consensus 358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 344555555566789999988777778899999999876
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.88 E-value=6.2e-06 Score=92.85 Aligned_cols=188 Identities=15% Similarity=0.227 Sum_probs=125.7
Q ss_pred CCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcC-CCCEEEEEe----CCCcEE
Q 004207 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGG----HDKKAV 580 (768)
Q Consensus 506 ~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSp-dg~~LaSgs----~Dg~I~ 580 (768)
..++++|..+|.|-+-......+. ......+|...+++++|++ |.++||.|- .|..+.
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred hhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 468899999999988866555432 1233468889999999998 777888773 356799
Q ss_pred EEECCCC--eEEE--Eecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeE
Q 004207 581 LWCTESF--TVKS--TLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (768)
Q Consensus 581 VWdl~t~--~~~~--tl~~-h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~l 655 (768)
|||+.++ .+.. .+.+ -.....+++|..+.+++++|.....|+++|++........+ ....|..+...|-...+
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY 210 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence 9999875 2211 1111 33456689999889999999999999999998422111111 23456677778855557
Q ss_pred EEEEeCCCcEEEEE-CCCCe-eEEEEec-----CCCeeEEEEecCCCE-EEEEEc-CCeEEEEECCC
Q 004207 656 LCSCDNNSEIRYWS-INNGS-CAGVFKC-----QSGATQMRFQPRLGR-ILAAAI-ENYISILDVET 713 (768)
Q Consensus 656 LaSgs~Dg~I~iWD-l~sg~-~i~~~~~-----~~~i~sl~fsp~~~~-llags~-Dg~I~IwD~~t 713 (768)
+|+.. ||.|.+|| .++-+ .+..+.. ...+..++|.|...- +++... .++|+.||+..
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 76555 99999999 44322 2222221 234888999997544 444443 47789998854
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.85 E-value=0.00079 Score=81.32 Aligned_cols=198 Identities=16% Similarity=0.211 Sum_probs=127.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----C--
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE----N-- 628 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~----t-- 628 (768)
.+.|.++.|..+..-++.+..+|.|.+.|.++..... ...-...|.+++|+||...++..+.+.+|.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3679999999999999999999999999887754332 22235679999999999999999888877654321 0
Q ss_pred ---------CCe-------eEEEeecC---------------------CCCeEEEEEeCCCCeEEEEE---eCC-CcEEE
Q 004207 629 ---------PDY-------SLRTFTGH---------------------STTVMSLDFHPSKEDLLCSC---DNN-SEIRY 667 (768)
Q Consensus 629 ---------~~~-------~~~~~~~h---------------------~~~V~slafsp~g~~lLaSg---s~D-g~I~i 667 (768)
.+. .-..+.+. .+.=++|+|--||..+.++. ..+ ..|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 000 00111111 11224588988887544322 223 78999
Q ss_pred EECCCCeeEEEEec-CCCeeEEEEecCCCEEEEEE---cCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCe
Q 004207 668 WSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLV 743 (768)
Q Consensus 668 WDl~sg~~i~~~~~-~~~i~sl~fsp~~~~llags---~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I 743 (768)
||-+ |..-..-.. .+--.+++|-|.|..+++.. +|+.|.+|..+....... .+.+......|
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f-------------~l~~p~de~~v 292 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF-------------VLPFPLDEKEV 292 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc-------------ccCCcccccch
Confidence 9977 443322221 23356899999888777754 466788887655322110 11122233348
Q ss_pred eEEEEeCCCCEEEE---EECCCcEEEe
Q 004207 744 SSLAASTVNGMVAS---ASHDKCVKIW 767 (768)
Q Consensus 744 ~sla~spdg~~LaS---gs~DG~V~IW 767 (768)
..++|+.++..|++ ......|++|
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEE
Confidence 99999999998887 4444458888
No 326
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=1.5e-05 Score=92.04 Aligned_cols=125 Identities=17% Similarity=0.232 Sum_probs=92.6
Q ss_pred CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCC-cE
Q 004207 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI 665 (768)
Q Consensus 587 ~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg-~I 665 (768)
.+...++..|+...+|++|+-+.++|+.|+..|.|++|++.+|.. .....+|.+.|+-|.-+-+|..+|.+++... ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 345567778889999999999999999999999999999999875 6788899999999999889887776665544 56
Q ss_pred EEEECCC-CeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004207 666 RYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (768)
Q Consensus 666 ~iWDl~s-g~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~ 715 (768)
.+|++.+ +...++|. .-.++.|+.....-+.|+......+||+.+..
T Consensus 1170 aLW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred HHhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCc
Confidence 7898864 34444443 23455666554444445555566777777653
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0035 Score=73.47 Aligned_cols=191 Identities=12% Similarity=0.144 Sum_probs=123.5
Q ss_pred cCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCC-CEEEEEeCCC----
Q 004207 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDK---- 577 (768)
Q Consensus 503 ~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg-~~LaSgs~Dg---- 577 (768)
+.....|+.|+.||.|...+. .+..+..+.++...|...-|.-++ .+|++.+.|+
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~--------------------s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNS--------------------SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNP 91 (933)
T ss_pred cCCCceEEEeeccccEEEecc--------------------cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCc
Confidence 445668889999998887732 233445566776664333444444 6788777765
Q ss_pred -cEEEEECCCC---e---EE--EEecc-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCCeeEEEeecCC
Q 004207 578 -KAVLWCTESF---T---VK--STLEE-----HTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPDYSLRTFTGHS 640 (768)
Q Consensus 578 -~I~VWdl~t~---~---~~--~tl~~-----h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~---t~~~~~~~~~~h~ 640 (768)
.|+||+++.. + ++ ..+.. ...++.+++.+.+-..+|+|-.+|.|..+.-+ .............
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~ 171 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK 171 (933)
T ss_pred eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC
Confidence 4899998642 2 22 11112 25678899999998899999999999988532 1111233344456
Q ss_pred CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee-EEEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 004207 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (768)
Q Consensus 641 ~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~-i~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~ 715 (768)
.+|+.+++..++..+++++. ...|.+|.+....+ ...+.. +..+.|..|++....+++++ +..|.+||.....
T Consensus 172 ~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred CCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 89999999998887443443 34799999984442 333443 45577888887655455544 4668899887543
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.75 E-value=0.014 Score=61.39 Aligned_cols=209 Identities=11% Similarity=0.138 Sum_probs=114.1
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~-~LaSgs~Dg~I~VWdl~t~~~~~tl~~h-~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
-+.+.+-...|..|+|+|+.+ ++++....+.|..++.+ ++++..+... .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345566666799999999755 66677778888888874 7888776433 35688999988887777766689999998
Q ss_pred CCCCCe--eE---EEe-----ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC---CeeEEEEe---------cCC
Q 004207 626 TENPDY--SL---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS 683 (768)
Q Consensus 626 l~t~~~--~~---~~~-----~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s---g~~i~~~~---------~~~ 683 (768)
+..... .. ..+ ..+...+-.|+|++.+..++++.- ..-..+|.+.. ...+.... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence 843221 11 111 124566899999999888886654 44455655542 22222111 124
Q ss_pred CeeEEEEecCCCEEEEEEc-CCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 004207 684 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 762 (768)
Q Consensus 684 ~i~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG 762 (768)
.+..+.++|..+.+++-+. ...|.++|... ... ..+.+..+.. -+...-.-.-.|+|.++|.+. ..++-+
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~~~------~~~~L~~g~~-gl~~~~~QpEGIa~d~~G~LY-IvsEpN 242 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQG-RVV------SSLSLDRGFH-GLSKDIPQPEGIAFDPDGNLY-IVSEPN 242 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT---EE------EEEE-STTGG-G-SS---SEEEEEE-TT--EE-EEETTT
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCC-CEE------EEEEeCCccc-CcccccCCccEEEECCCCCEE-EEcCCc
Confidence 5788999999888777664 56677888443 332 2233332210 000011235689999988644 455666
Q ss_pred cEEEe
Q 004207 763 CVKIW 767 (768)
Q Consensus 763 ~V~IW 767 (768)
.+++|
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 66665
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.00093 Score=75.65 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=102.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEE---eCC-CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEE-eCCCc--EEE
Q 004207 551 IPASTSKVESCHFSPDGKLLATG---GHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRT--VRV 623 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSg---s~D-g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTg-s~Dgt--IrV 623 (768)
+......+..-+|+|++..++.. ... ..+.++++.+++....+. ..+.-...+|+|||+.|+.+ ..||. |++
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 33445567778999999865543 222 358999999876554443 23334567899998876554 45664 566
Q ss_pred EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE
Q 004207 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags 701 (768)
+|+.... +..+....+.-+.-.|+|+|+.++++.+..|. |.++|++.+...+.......-..-.|+|+|.+++..+
T Consensus 267 ~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 267 MDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred EcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence 6776654 33344333334467799999999999888876 4555666555444333333333778999999988877
Q ss_pred cC-Ce--EEEEECCCc
Q 004207 702 IE-NY--ISILDVETQ 714 (768)
Q Consensus 702 ~D-g~--I~IwD~~t~ 714 (768)
.. |. |.++|+.+.
T Consensus 345 ~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 345 SSGGQWDIDKNDLASG 360 (425)
T ss_pred ccCCceeeEEeccCCC
Confidence 43 33 555655544
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0018 Score=74.47 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=89.7
Q ss_pred ccCCCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004207 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (768)
Q Consensus 502 l~~~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~V 581 (768)
++..+.+++.|+.-|.+.+|....+.- ......+-.+.+..+++|++..++|.|+..|.|.|
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~------------------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEM------------------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhh------------------hcccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence 456788999999999999996543310 00111123455777788888889999999999999
Q ss_pred EECCCCeE-----EEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---CeeEEEeecCCCCeEEEEEe
Q 004207 582 WCTESFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFH 649 (768)
Q Consensus 582 Wdl~t~~~-----~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~---~~~~~~~~~h~~~V~slafs 649 (768)
+-+..... +... +.|...|+|++|++++..|++|...|+|..-.++.. ......+....+.|.-|+..
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 97665221 1111 347789999999999999999999999998888762 11123333345667666654
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00033 Score=75.51 Aligned_cols=94 Identities=14% Similarity=0.220 Sum_probs=79.9
Q ss_pred EEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLa 657 (768)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++... +..+..| ..+++++|+-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-eeheecc-CCceeeeeccCCcceeE
Confidence 66776666666667778888999999999766 788999999999999998654 6677767 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCe
Q 004207 658 SCDNNSEIRYWSINNGS 674 (768)
Q Consensus 658 Sgs~Dg~I~iWDl~sg~ 674 (768)
.|..+|.|.|||++..+
T Consensus 253 aGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EeccCceEEEEEccCCC
Confidence 99999999999998643
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.67 E-value=0.0075 Score=65.32 Aligned_cols=205 Identities=13% Similarity=0.164 Sum_probs=123.4
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccCCC-C------EEEEEEcCCCCEEEEEeC--CC
Q 004207 559 ESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQ-W------ITDVRFSPSLSRLATSSA--DR 619 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~----------Dg~I~VWdl~t~~~~~tl~~h~~-~------V~sl~fspdg~~LaTgs~--Dg 619 (768)
-.+.++||++.+++++. .-.|.+||..+..+...+.-..+ . ...+.++.|+++++.... --
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 34667999998876532 33689999999988876643332 1 223567778887776543 34
Q ss_pred cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-CCeeEEEEe----c-CCC-eeEEEEec
Q 004207 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK----C-QSG-ATQMRFQP 692 (768)
Q Consensus 620 tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-sg~~i~~~~----~-~~~-i~sl~fsp 692 (768)
.|.|-|+...+. +..+.- .+ |....|.++.-|.+-+.||.+....+. .|+...... . ..+ +..-.+..
T Consensus 119 SVtVVDl~~~kv-v~ei~~-PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 119 SVTVVDLAAKKV-VGEIDT-PG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp EEEEEETTTTEE-EEEEEG-TS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred eEEEEECCCCce-eeeecC-CC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 688888887665 444331 22 222334443345566669999888887 455442221 1 111 22334555
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEeeecc-----------------------------------------------eeEE
Q 004207 693 RLGRILAAAIENYISILDVETQVCRLKLQ-----------------------------------------------TLEL 725 (768)
Q Consensus 693 ~~~~llags~Dg~I~IwD~~t~~~~~~~~-----------------------------------------------~I~i 725 (768)
.++.++..+.+|.|+-.|+.......... .|-+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 56677778888888877776543211110 5666
Q ss_pred eecCCCceEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 004207 726 WNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 768 (768)
Q Consensus 726 wd~~~~~~~~l~~H~~~I~sla~spdg~-~LaSgs-~DG~V~IWD 768 (768)
+|+.+.+.+.-..-...|.+|.++.+.. +|++.+ .++.|.|||
T Consensus 274 ~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 274 YDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6777777764444345688999998775 666554 578999986
No 333
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.012 Score=66.02 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=114.2
Q ss_pred eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCeeE
Q 004207 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 633 (768)
Q Consensus 558 I~sl~fSpdg~~-LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---DgtIrVWDl~t~~~~~ 633 (768)
-.++++++++.. +++...+..|.+.|..+.+.......-. ....++|+++++.++.+.. +++|.+.|..+.+...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 456788888884 4455556899999988877776664333 5678999999988777766 6888888888877644
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-----EEecCCCeeEEEEecCCCEEEEEEcC---Ce
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY 705 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-----~~~~~~~i~sl~fsp~~~~llags~D---g~ 705 (768)
. ......+ ..+++.|++..++++-..++.|.++|.......+ ..........+.+++++.++++.... +.
T Consensus 155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 4 3332334 8899999999888777789999999987665553 12234456778999999977766544 48
Q ss_pred EEEEECCCceEe
Q 004207 706 ISILDVETQVCR 717 (768)
Q Consensus 706 I~IwD~~t~~~~ 717 (768)
+.+.|..+....
T Consensus 233 v~~id~~~~~v~ 244 (381)
T COG3391 233 VLKIDTATGNVT 244 (381)
T ss_pred EEEEeCCCceEE
Confidence 888888776543
No 334
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.62 E-value=0.012 Score=60.54 Aligned_cols=104 Identities=11% Similarity=0.014 Sum_probs=66.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s 645 (768)
-|++++.|+..|.+++.+.++++....+.....--......+++..+..++.|++.+..|.++... +...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c-VykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce-EEecccCCceecc
Confidence 477899999999999999999987766643322112233567889999999999999999998665 4444433333344
Q ss_pred EEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207 646 LDFHPSKEDLLCSCDNNSEIRYWSIN 671 (768)
Q Consensus 646 lafsp~g~~lLaSgs~Dg~I~iWDl~ 671 (768)
-+..|-...+++ +...|.|.--...
T Consensus 141 P~i~~g~~sly~-a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 141 PVIAPGDGSLYA-AITAGAVLAVTKN 165 (354)
T ss_pred ceecCCCceEEE-EeccceEEEEccC
Confidence 445553233443 2334444433333
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.62 E-value=0.012 Score=71.59 Aligned_cols=161 Identities=15% Similarity=0.189 Sum_probs=99.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----C-------------------CeEEEEeccCC-------------
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE----S-------------------FTVKSTLEEHT------------- 597 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~----t-------------------~~~~~tl~~h~------------- 597 (768)
-...|.+++||||..+++..+.+++|.+-+-. . |+....+.+..
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 34569999999999999988887777664320 0 11111121100
Q ss_pred --------CCEEEEEEcCCCCEEEEEe----CC-CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEE--eCC
Q 004207 598 --------QWITDVRFSPSLSRLATSS----AD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNN 662 (768)
Q Consensus 598 --------~~V~sl~fspdg~~LaTgs----~D-gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSg--s~D 662 (768)
+.=+.|.|.-||.++|+.. .+ ..|+|||-+ +.. -.+-....+--.+++|-|.|..+.+.. ..|
T Consensus 188 ~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 188 ALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred cccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCC
Confidence 1124589999999998842 23 789999987 321 111112234456799999877444332 246
Q ss_pred CcEEEEECC---CCeeEEEEecCC-CeeEEEEecCCCEEEE---EEcCCeEEEEECCCceE
Q 004207 663 SEIRYWSIN---NGSCAGVFKCQS-GATQMRFQPRLGRILA---AAIENYISILDVETQVC 716 (768)
Q Consensus 663 g~I~iWDl~---sg~~i~~~~~~~-~i~sl~fsp~~~~lla---gs~Dg~I~IwD~~t~~~ 716 (768)
+.|.+|.-. .|+.+..+.... .+..++|+.++..|++ ......|.+|-+.+...
T Consensus 266 ~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred CcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 678888743 233222233223 3889999999887776 33344599999877643
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.58 E-value=0.0061 Score=69.36 Aligned_cols=145 Identities=12% Similarity=0.145 Sum_probs=81.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE-ECCCC
Q 004207 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENP 629 (768)
Q Consensus 551 l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW-Dl~t~ 629 (768)
+....-....+.++|+|++++++ .||.-.||.....+.... +.-..++|..+ ..+|+-....+|.|+ +++..
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccc
Confidence 33444457889999999999885 578888888555554432 22346779885 457777778899996 34322
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709 (768)
Q Consensus 630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~Iw 709 (768)
. ...+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.++.+.... |..+.|++++.+++..+.+ .+.|+
T Consensus 101 ~--~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 101 V--VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp T--T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred c--ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEE
Confidence 1 112221 122444433 55 444444 4489999999999999998643 8999999998888777655 56665
Q ss_pred ECC
Q 004207 710 DVE 712 (768)
Q Consensus 710 D~~ 712 (768)
+..
T Consensus 171 ~~~ 173 (443)
T PF04053_consen 171 KYN 173 (443)
T ss_dssp EE-
T ss_pred Eec
Confidence 543
No 337
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.58 E-value=0.0074 Score=67.79 Aligned_cols=175 Identities=15% Similarity=0.109 Sum_probs=104.1
Q ss_pred ceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cc------CCCCEEEEEEcC-----CC
Q 004207 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL 609 (768)
Q Consensus 543 ~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl--~~------h~~~V~sl~fsp-----dg 609 (768)
..|.++..+....++|++|+.| |=.++|+|..+|.+.|.|++...++..- .. ....|+++.|.- |+
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 3577888888889999999997 6669999999999999999888877652 22 234688888862 22
Q ss_pred ---CEEEEEeCCCcEEEEECCC---CCeeE---EEeecCCCCeEEEE-EeCC-C-------------------CeEEEEE
Q 004207 610 ---SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPS-K-------------------EDLLCSC 659 (768)
Q Consensus 610 ---~~LaTgs~DgtIrVWDl~t---~~~~~---~~~~~h~~~V~sla-fsp~-g-------------------~~lLaSg 659 (768)
-+|++|...|.+.+|.+.- +...+ .....+.++|..|. |+.+ | ..+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 4789999999999998752 22222 12224667777766 3221 0 1244444
Q ss_pred eCCCcEEEEECCCCeeEEEEecCCC--eeEEEEe-----cCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207 660 DNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKL 720 (768)
Q Consensus 660 s~Dg~I~iWDl~sg~~i~~~~~~~~--i~sl~fs-----p~~~~llags~Dg~I~IwD~~t~~~~~~~ 720 (768)
+ +..|+++...+.+..+... ... ...+++- ..+..|++...+|.|++|.+...+.+...
T Consensus 233 S-e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 233 S-ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp --SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred c-ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 4 6789999998877766554 332 2234442 24456788889999999999887665443
No 338
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00037 Score=79.03 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=80.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~-sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~ 634 (768)
-.|.-+.|+|.-.+||++..+|.|.++.+. ...+.++.-|...++ +++|.|||+.||+|-.||+|++.|++++.....
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 458889999999999999999999999987 777888887777777 999999999999999999999999999876444
Q ss_pred EeecCCCCeEEEEEeC
Q 004207 635 TFTGHSTTVMSLDFHP 650 (768)
Q Consensus 635 ~~~~h~~~V~slafsp 650 (768)
........|.++.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 3344567788888874
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.50 E-value=3.8e-05 Score=86.70 Aligned_cols=198 Identities=13% Similarity=0.109 Sum_probs=122.3
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeE--EEEeccCCCCEEEEEEcC-CCCEEEEEe----CCCcEEEEE
Q 004207 555 TSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWD 625 (768)
Q Consensus 555 ~~~I~sl~fSpdg--~~LaSgs~Dg~I~VWdl~t~~~--~~tl~~h~~~V~sl~fsp-dg~~LaTgs----~DgtIrVWD 625 (768)
...+.|+++.-+. ..+++|..+|.|.+-.+....- .....+|....++++|++ |.++||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3457788876644 3788999999999987654322 234456778899999998 556677663 255799999
Q ss_pred CCCCC----eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEE
Q 004207 626 TENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 626 l~t~~----~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags 701 (768)
+.+.- .......+......+++|..+ ..++.+|.....|.++|+|........-....+..+.++|-..-.++..
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence 98651 111111223455678999965 4467788888899999998322111111123455667777333345666
Q ss_pred cCCeEEEEEC-CCceEeeecceeEEeecCCCceEEeccC----CCCeeEEEEeCCC-CEEEEEEC-CCcEEEeC
Q 004207 702 IENYISILDV-ETQVCRLKLQTLELWNMTENKTLTLSAH----DKLVSSLAASTVN-GMVASASH-DKCVKIWK 768 (768)
Q Consensus 702 ~Dg~I~IwD~-~t~~~~~~~~~I~iwd~~~~~~~~l~~H----~~~I~sla~spdg-~~LaSgs~-DG~V~IWD 768 (768)
.|+.|.+||. +..+... ..+... ...+..++|+|.. ..+++.+. .++|+++|
T Consensus 215 ~dg~iAiwD~~rnienpl---------------~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPL---------------QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ccCceeeccchhhhccHH---------------HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 6999999994 3221110 000011 1237889999865 45666655 45677664
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.50 E-value=0.0065 Score=70.56 Aligned_cols=196 Identities=10% Similarity=0.088 Sum_probs=119.0
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCeEEEEecc-CCCCEEEEE-------------------EcCCCCEEEE-EeCCCcEEE
Q 004207 566 DGKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVR-------------------FSPSLSRLAT-SSADRTVRV 623 (768)
Q Consensus 566 dg~~LaSgs~-Dg~I~VWdl~t~~~~~tl~~-h~~~V~sl~-------------------fspdg~~LaT-gs~DgtIrV 623 (768)
||+||++-.. ..+|-..+++..++...++. ....+..++ +.|||+.+.. .-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 7888887653 55677777776665443321 111222222 3345544322 223456777
Q ss_pred EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEe---------------------------------------CCCc
Q 004207 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---------------------------------------NNSE 664 (768)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs---------------------------------------~Dg~ 664 (768)
.|.++.+..-....+ +....++++++|+++++++. .++.
T Consensus 220 ID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~ 297 (635)
T PRK02888 220 VDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSK 297 (635)
T ss_pred EECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCE
Confidence 777765542233322 24456777888877776651 1245
Q ss_pred EEEEECCC-----CeeEEEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecCCCceEEecc
Q 004207 665 IRYWSINN-----GSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMTENKTLTLSA 738 (768)
Q Consensus 665 I~iWDl~s-----g~~i~~~~~~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~ 738 (768)
|.++|.++ ...+..+........+.++|++.++++++ .+++|.|+|+.+.+.....+ | +.+..-.....-
T Consensus 298 V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-~---~~~~~vvaevev 373 (635)
T PRK02888 298 VPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-I---KPRDAVVAEPEL 373 (635)
T ss_pred EEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-C---CccceEEEeecc
Confidence 88888887 46677777778889999999999988776 58999999998854321111 1 111111111111
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 739 HDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 739 H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.......+|.++|....|-.-|..|..||
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 23345678899988888888899999996
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.50 E-value=0.0072 Score=65.99 Aligned_cols=172 Identities=12% Similarity=0.119 Sum_probs=103.4
Q ss_pred CcEEEEECCCCeEEEEeccC-CCCEEEEE---EcCC----CCEEEEEeC----------CCcEEEEECCCC-----CeeE
Q 004207 577 KKAVLWCTESFTVKSTLEEH-TQWITDVR---FSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL 633 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h-~~~V~sl~---fspd----g~~LaTgs~----------DgtIrVWDl~t~-----~~~~ 633 (768)
..|++.|..+.+.+.++.-. ...|++++ |..+ ..+|++|.. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888888888777655322 23344443 3332 467777654 288999999873 2222
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-eEEEEecCC--CeeEEEEecCCCEEEEEEcCCeEEEEE
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQS--GATQMRFQPRLGRILAAAIENYISILD 710 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-~i~~~~~~~--~i~sl~fsp~~~~llags~Dg~I~IwD 710 (768)
.......++|++|+-. ++.++++. ++.|.+|++...+ ....-.... .+.++... ++++++|.....|.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 2233457889999876 34455443 5799999998777 554444333 45555444 56899998878777764
Q ss_pred CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
...... .+. .+.-......++++.|-++++.++++..+|.|.++
T Consensus 156 ~~~~~~-----~l~--------~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 156 YDEENN-----KLI--------LVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVL 199 (321)
T ss_dssp EETTTE------EE--------EEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred EEccCC-----EEE--------EEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence 332110 000 11111234458888888666799999999999876
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.45 E-value=0.024 Score=65.80 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=89.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCCC--EEEEEEcC--CCCEEEEEe---------CCCcEEEEECCCCCeeEE
Q 004207 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~--V~sl~fsp--dg~~LaTgs---------~DgtIrVWDl~t~~~~~~ 634 (768)
..++.++.++.|+.+|.++++.+..+...... -..+.-+| .+.+++.++ .++.|..+|..+++..-.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 67778888999999999999999887543321 01111122 124455553 367899999998875322
Q ss_pred EeecCC-------------------CCe-EEEEEeCCCCeEEEEEeCCC------------------cEEEEECCCCeeE
Q 004207 635 TFTGHS-------------------TTV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSCA 676 (768)
Q Consensus 635 ~~~~h~-------------------~~V-~slafsp~g~~lLaSgs~Dg------------------~I~iWDl~sg~~i 676 (768)
...... ..| .+.++++.+..++ .++.++ .|.-+|+.+|+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~-vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVY-VGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEE-EECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 211111 001 1234444444344 554444 7999999999998
Q ss_pred EEEecCCC-e------eEEEEe----cCCC---EEEEEEcCCeEEEEECCCceEeee
Q 004207 677 GVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 677 ~~~~~~~~-i------~sl~fs----p~~~---~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
..+..... . ....+. -++. .+++++.+|.+..+|.++++.+..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 88764211 1 111111 1222 477778899999999988876543
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.44 E-value=0.04 Score=62.25 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCC-----------cE
Q 004207 558 VESCHFSPDGKLLATG-GHDK----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 621 (768)
Q Consensus 558 I~sl~fSpdg~~LaSg-s~Dg----~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg-----------tI 621 (768)
+..+++||||++||.+ +..| .|+|+|+++++.+....... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999988855 3334 59999999998775332111 123499999988877766544 37
Q ss_pred EEEECCCCCee-EEEeecCCCC--eEEEEEeCCCCeEEEEEeCC---CcEEEEECCCC-----eeEEEEecCCCeeEEEE
Q 004207 622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNN---SEIRYWSINNG-----SCAGVFKCQSGATQMRF 690 (768)
Q Consensus 622 rVWDl~t~~~~-~~~~~~h~~~--V~slafsp~g~~lLaSgs~D---g~I~iWDl~sg-----~~i~~~~~~~~i~sl~f 690 (768)
+.|.+.++... ...+...... ...+..+++++.+++..... ..|.+.|+..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888776432 3344433332 56788999999888766543 35888888864 33333333334433332
Q ss_pred ecCCCEEEEEEcC----CeEEEEECCCc
Q 004207 691 QPRLGRILAAAIE----NYISILDVETQ 714 (768)
Q Consensus 691 sp~~~~llags~D----g~I~IwD~~t~ 714 (768)
+. +..++..+.+ +.|...++...
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~ 311 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADP 311 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTST
T ss_pred cc-CCEEEEeeCCCCCCcEEEEeccccc
Confidence 33 4444444432 45555665543
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.00052 Score=79.54 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207 558 VESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~----Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~ 633 (768)
-+-++|+|...+|++++. .|.|.||- ++|++-....- .-.+++++|+|..-.|+.|-.-|.+.||...+.+. -
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-h 94 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-H 94 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCcee-e
Confidence 344689999999888754 57888884 56665433321 22367899999988899999999999999887664 4
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~ 671 (768)
.....|..+|..+.|+++|. .+++++.-|.|.+|...
T Consensus 95 tv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 45556999999999999988 55599999999999765
No 345
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.37 E-value=0.033 Score=61.73 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=89.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccC----------------CCCEEEEEEcCCCCEEEEEeC
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEH----------------TQWITDVRFSPSLSRLATSSA 617 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h----------------~~~V~sl~fspdg~~LaTgs~ 617 (768)
...+....|||+|++||... ++.|.+++..++...... .+- -+.-..+.||||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999998875 578999998777544221 110 112356889999999888654
Q ss_pred CC------------------------------------cEEEEECCCCCee-EEEe---ecCCCCeEEEEEeCCCCeEEE
Q 004207 618 DR------------------------------------TVRVWDTENPDYS-LRTF---TGHSTTVMSLDFHPSKEDLLC 657 (768)
Q Consensus 618 Dg------------------------------------tIrVWDl~t~~~~-~~~~---~~h~~~V~slafsp~g~~lLa 657 (768)
|. .+.|+|+.+++.. +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 31 2334444444321 1111 123445788899998773443
Q ss_pred -EEeCCC---cEEEEECCCCeeEEEEec--CC---CeeEEEEe-cCCCEEEEEE-cCCe--EEEEECCCce
Q 004207 658 -SCDNNS---EIRYWSINNGSCAGVFKC--QS---GATQMRFQ-PRLGRILAAA-IENY--ISILDVETQV 715 (768)
Q Consensus 658 -Sgs~Dg---~I~iWDl~sg~~i~~~~~--~~---~i~sl~fs-p~~~~llags-~Dg~--I~IwD~~t~~ 715 (768)
..+.+. .+.++|..++.+...+.. .. ....+.|. +++..++..+ .+|. |.+++..++.
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~ 271 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK 271 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence 333332 466678877665443332 11 12345554 6666555444 5554 5566665553
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.33 E-value=0.035 Score=62.40 Aligned_cols=194 Identities=17% Similarity=0.173 Sum_probs=106.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-------------------------------------------EEEEe
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-------------------------------------------VKSTL 593 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-------------------------------------------~~~tl 593 (768)
.|+++.|+++..-|++|...|.|.||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48999999998899999999999998542110 11122
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE-eec------CCCCeEEEEEeC-----CC--CeEEEEE
Q 004207 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTG------HSTTVMSLDFHP-----SK--EDLLCSC 659 (768)
Q Consensus 594 ~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~-~~~------h~~~V~slafsp-----~g--~~lLaSg 659 (768)
....++|++++.+ |-.++|.|..+|.+.|.|++.+...... +.. ....|+++.|.- |+ .-++++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3356789999997 5569999999999999999876653331 111 234688888852 21 2356688
Q ss_pred eCCCcEEEEECC-C--Ce----eEEEE-ecCCCeeEEE-EecCC--------------------CEEEEEEcCCeEEEEE
Q 004207 660 DNNSEIRYWSIN-N--GS----CAGVF-KCQSGATQMR-FQPRL--------------------GRILAAAIENYISILD 710 (768)
Q Consensus 660 s~Dg~I~iWDl~-s--g~----~i~~~-~~~~~i~sl~-fsp~~--------------------~~llags~Dg~I~IwD 710 (768)
...|.+.+|.+. . +. ..... ...+.+..+. |+.+. .-+++.+.+..|+++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 889999999874 1 21 11121 2234444444 32221 2245556677788888
Q ss_pred CCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEE-----eCCCCEEEEEECCCcEEEe
Q 004207 711 VETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAA-----STVNGMVASASHDKCVKIW 767 (768)
Q Consensus 711 ~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~-----spdg~~LaSgs~DG~V~IW 767 (768)
..+.+..++. |+ ..-....+++ ...+..|++-..||.|++|
T Consensus 242 ~~~~k~~~K~-----~~-----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 242 PPKSKGAHKS-----FD-----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp TT---EEEEE------S-----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred CCCCccccee-----ec-----------cccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 7776554321 11 0001112222 2235577777888888876
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.28 E-value=0.013 Score=64.99 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=63.3
Q ss_pred cCCCCEEEEE---------eCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207 564 SPDGKLLATG---------GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 564 Spdg~~LaSg---------s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~ 634 (768)
|||+++++.. +..+.+.|||+++++....... ...+....|+|+|+.++... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 5788876663 2246789999999766644333 56788999999999998875 67899999876643222
Q ss_pred Eeec-------C---------CCCeEEEEEeCCCCeEEEEEeCCCcE
Q 004207 635 TFTG-------H---------STTVMSLDFHPSKEDLLCSCDNNSEI 665 (768)
Q Consensus 635 ~~~~-------h---------~~~V~slafsp~g~~lLaSgs~Dg~I 665 (768)
+..+ - -+.-..+.|+|+++.+++.--++..|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v 125 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREV 125 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCC
Confidence 2222 0 12235688999998777655444433
No 348
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.20 E-value=0.092 Score=55.66 Aligned_cols=142 Identities=16% Similarity=0.141 Sum_probs=90.2
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE---------
Q 004207 566 DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--------- 635 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~--------- 635 (768)
.++.|+.|..+| |.+|++.. .+..... +...|..+...++-+.|++-+ |+.|+++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 678899999888 99999833 3333333 233499999999877776664 599999998754322210
Q ss_pred ----eecCCCCeEEEE--EeCCCCeEEEEEeCCCcEEEEECCC----C-eeEEEEecCCCeeEEEEecCCCEEEEEEcCC
Q 004207 636 ----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINN----G-SCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (768)
Q Consensus 636 ----~~~h~~~V~sla--fsp~g~~lLaSgs~Dg~I~iWDl~s----g-~~i~~~~~~~~i~sl~fsp~~~~llags~Dg 704 (768)
.......+...+ -...+...++++. ...|.+|.... . ...+.+.....+..++|.. +.++++..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--NKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--CEEEEEeCC-
Confidence 111223344444 1233344554444 55888887654 2 5667788889999999994 466666544
Q ss_pred eEEEEECCCce
Q 004207 705 YISILDVETQV 715 (768)
Q Consensus 705 ~I~IwD~~t~~ 715 (768)
...++|+.++.
T Consensus 158 ~f~~idl~~~~ 168 (275)
T PF00780_consen 158 GFYLIDLNTGS 168 (275)
T ss_pred ceEEEecCCCC
Confidence 47778887543
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.0093 Score=67.64 Aligned_cols=154 Identities=16% Similarity=0.105 Sum_probs=96.1
Q ss_pred CeEEEEeccCCCCEEEEEEcCCCCEEEEEeC---C-CcEEEEECCCCCeeE-EEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (768)
Q Consensus 587 ~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~---D-gtIrVWDl~t~~~~~-~~~~~h~~~V~slafsp~g~~lLaSgs~ 661 (768)
+.....+......+..-+|+|++..++..+. . ..|.++|++++.... ..+. +.-....|+|+|+.++++...
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCCCCCEEEEEECC
Confidence 3444444444556778889999887655432 2 358999999876422 2223 344567899999999988888
Q ss_pred CCc--EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcC-Ce--EEEEECCCceEeeecceeEEeecCCCceEEe
Q 004207 662 NSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-NY--ISILDVETQVCRLKLQTLELWNMTENKTLTL 736 (768)
Q Consensus 662 Dg~--I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~D-g~--I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l 736 (768)
||. |.++|+..+...+.....+.-+.-.|+|+|.+++.++.. |. |.++|++.... ..+
T Consensus 259 dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-----------------~ri 321 (425)
T COG0823 259 DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-----------------TRL 321 (425)
T ss_pred CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----------------eEe
Confidence 876 555677776644422233334467899999998887653 32 44555544322 111
Q ss_pred ccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 737 SAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 737 ~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
......-..-.|+|+|++|+..+.
T Consensus 322 T~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 322 TFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred eccCCCCcCccCCCCCCEEEEEec
Confidence 111121226678999998887774
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0034 Score=72.32 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=94.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCee--
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-- 632 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~-- 632 (768)
..|.--+++..+++++.|+.-|.|++|+...+.....- .+..+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 34544556668899999999999999998776554322 234455666778888888999999999999988653211
Q ss_pred --E-EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-----eeEEEEecCCCeeEEEEec
Q 004207 633 --L-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQP 692 (768)
Q Consensus 633 --~-~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-----~~i~~~~~~~~i~sl~fsp 692 (768)
+ ..-..|...|+|++|++++..++ +|+..|.|.+-.+.+. .....+.....|..+.+..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 1 11233788999999999988555 9999999998877761 1222333345566655543
No 351
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.11 E-value=0.033 Score=50.73 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=75.5
Q ss_pred eEEEEE---eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeee
Q 004207 643 VMSLDF---HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (768)
Q Consensus 643 V~slaf---sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~ 719 (768)
|++|++ ..+|..-|++|+.|..|++|+- .+++..+.....+++++-... ..++.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~------- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS------- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc-------
Confidence 455554 4466677889999999999975 478888888888999888776 679999999999999863
Q ss_pred cceeEEeecCCCceEEeccCCCCeeEEEEeCC---C-CEEEEEECCCcEEE
Q 004207 720 LQTLELWNMTENKTLTLSAHDKLVSSLAASTV---N-GMVASASHDKCVKI 766 (768)
Q Consensus 720 ~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd---g-~~LaSgs~DG~V~I 766 (768)
.++|.+.+. ..++++++..- | .-|++|-.+|.|-+
T Consensus 72 ---~RlWRiKSK---------~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 ---QRLWRIKSK---------NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---ceeeeeccC---------CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 467766532 23566655432 2 37889988998754
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.11 E-value=0.01 Score=67.62 Aligned_cols=137 Identities=12% Similarity=0.167 Sum_probs=80.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------CeeEEEe
Q 004207 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----------DYSLRTF 636 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~----------~~~~~~~ 636 (768)
|.+|+..+.+ .|.+||+.+++.+..+... +|..|.|++++++++..+.+ ++.|++.+.. +..+..+
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 7777777654 8999999999999999643 48999999999999988755 6777776532 0123333
Q ss_pred ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 637 ~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
..-...|.+.+|..+ .++.|.. . .|+. +-.|..........++.-+.+.+..+.++....|+.|..+.+..
T Consensus 193 ~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 193 HEISERIKSGCWVED--CFIYTTS-N-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEE-S--SEEEEETT--EEEEE-T-T-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 333568999999865 3444433 3 7776 44454433333356677777888777888888888887776643
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.08 E-value=0.17 Score=53.27 Aligned_cols=152 Identities=12% Similarity=0.242 Sum_probs=93.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----E--EEEe-----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----V--KSTL-----EEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~----~--~~tl-----~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW 624 (768)
+....|++..++.++++.-.++.+.++++.... . ...+ ..++..+..|+|++.+..|+.+-...-..||
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~ 144 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY 144 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence 457888998778777766668999999873311 1 1111 1245668999999988888888777777777
Q ss_pred ECCC--CCeeE--EEe------ecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCC----------C
Q 004207 625 DTEN--PDYSL--RTF------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----------G 684 (768)
Q Consensus 625 Dl~t--~~~~~--~~~------~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~----------~ 684 (768)
.+.. ....+ ... ......+.+++++|..+++++..+.+..|.++| ..|+.+..+.... .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~Q 223 (248)
T PF06977_consen 145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQ 223 (248)
T ss_dssp EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---S
T ss_pred EEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCC
Confidence 7653 21111 111 113356899999999999999999999999999 6688877776533 3
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEE
Q 004207 685 ATQMRFQPRLGRILAAAIENYISIL 709 (768)
Q Consensus 685 i~sl~fsp~~~~llags~Dg~I~Iw 709 (768)
.-.|+|.++| .|+.++.-+..++|
T Consensus 224 pEGIa~d~~G-~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 224 PEGIAFDPDG-NLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEEE-TT---EEEEETTTEEEEE
T ss_pred ccEEEECCCC-CEEEEcCCceEEEe
Confidence 6789999986 57777777766665
No 354
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.07 E-value=0.0016 Score=44.81 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.3
Q ss_pred CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (768)
Q Consensus 587 ~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD 625 (768)
+++...+..|...|.++.|++++.++++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999999999999999999996
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.06 E-value=0.042 Score=59.96 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=92.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~-~~~tl~-~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~ 630 (768)
...++|++|+-- .+. |+++. .+.|++|++...+ ....-. .....|.++... ++++++|.....|.++.++...
T Consensus 86 ~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 86 EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT
T ss_pred eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC
Confidence 346789998876 444 44443 4789999988776 443222 122367777666 4599999988888887554322
Q ss_pred --eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------Ce----eEEEEecCCCeeEE---EEecC-
Q 004207 631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GS----CAGVFKCQSGATQM---RFQPR- 693 (768)
Q Consensus 631 --~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~----~i~~~~~~~~i~sl---~fsp~- 693 (768)
.....-......+++++|.++++ .+++++.+|.|.++.... +. .+..+..+..|+++ ++.|.
T Consensus 161 ~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~ 239 (321)
T PF03178_consen 161 NKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS 239 (321)
T ss_dssp E-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred CEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence 22222233455689999987765 777899999999987652 22 33445557778877 44452
Q ss_pred -CC------EEEEEEcCCeEEEE
Q 004207 694 -LG------RILAAAIENYISIL 709 (768)
Q Consensus 694 -~~------~llags~Dg~I~Iw 709 (768)
.. .++.++.+|.|.+.
T Consensus 240 ~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 240 GSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCcccccceEEEEecCCEEEEE
Confidence 22 38888899988744
No 356
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.03 E-value=0.3 Score=54.09 Aligned_cols=142 Identities=14% Similarity=0.196 Sum_probs=74.8
Q ss_pred ccccC-CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCC-CCeEEEEEcCCCCEEEEEeCCC
Q 004207 500 NQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDK 577 (768)
Q Consensus 500 ~~l~~-~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~I~sl~fSpdg~~LaSgs~Dg 577 (768)
..+.+ ..++|..+..|+.-.+|...-. ++ ++.-+..+. .......++++.+.++-...+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~--------------t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~ 102 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLA--------------TG----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGR 102 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETT--------------T-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTT
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcc--------------cC----EEEECccCCCCCccceEEecCCCeEEEEECCC
Confidence 33443 3466677777888888743211 11 122222222 1222456678888877666667
Q ss_pred cEEEEECCCCeEEEEeccCCCCEEEEEEc--CCCCEEEEEeC----------------------CCcEEEEECCCCCeeE
Q 004207 578 KAVLWCTESFTVKSTLEEHTQWITDVRFS--PSLSRLATSSA----------------------DRTVRVWDTENPDYSL 633 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fs--pdg~~LaTgs~----------------------DgtIrVWDl~t~~~~~ 633 (768)
.|+..|+++.+....+......+-...|. .++..++..-. ...|..-|+.+++.
T Consensus 103 ~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~-- 180 (386)
T PF14583_consen 103 SLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER-- 180 (386)
T ss_dssp EEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E--
T ss_pred eEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce--
Confidence 89999999988776666667766666674 35655544321 13455557776653
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeC
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~ 661 (768)
..+..-...+..+-|+|....+|+-|-+
T Consensus 181 ~~v~~~~~wlgH~~fsP~dp~li~fCHE 208 (386)
T PF14583_consen 181 KVVFEDTDWLGHVQFSPTDPTLIMFCHE 208 (386)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEEEEE-
T ss_pred eEEEecCccccCcccCCCCCCEEEEecc
Confidence 3333345667889999988888877753
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.02 E-value=0.0017 Score=44.64 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=33.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004207 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (768)
Q Consensus 547 ~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWd 583 (768)
.+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556678999999999999999999999999999996
No 358
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.01 E-value=0.001 Score=46.87 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHhcCCC
Q 004207 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (768)
Q Consensus 9 ~~~L~~yiydyl~k~~~~~~A~~~~~e~~~~ 39 (768)
+..|+..|++||.+.|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999998764
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.077 Score=59.52 Aligned_cols=160 Identities=17% Similarity=0.206 Sum_probs=117.3
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCee
Q 004207 557 KVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYS 632 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~---Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs-~DgtIrVWDl~t~~~~ 632 (768)
.-..++|+++++.+.++.. +++|.+.|..+.+...+...-..+ ..++++|++..++.+. .+++|.+.|......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v- 194 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV- 194 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce-
Confidence 4667899999987777655 688999999998888776544444 8999999999766665 688999999776443
Q ss_pred EEE----eecCCCCeEEEEEeCCCCeEEEEEeCC--CcEEEEECCCCeeEEE-EecCC-CeeEEEEecCCCEEEEEEc-C
Q 004207 633 LRT----FTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGV-FKCQS-GATQMRFQPRLGRILAAAI-E 703 (768)
Q Consensus 633 ~~~----~~~h~~~V~slafsp~g~~lLaSgs~D--g~I~iWDl~sg~~i~~-~~~~~-~i~sl~fsp~~~~llags~-D 703 (768)
.+. ...-......+.+.+++..+.++...+ +.+...|..++..... ..... ....+.++|++.++.+... .
T Consensus 195 ~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~ 274 (381)
T COG3391 195 VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG 274 (381)
T ss_pred eccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC
Confidence 210 111223456789999999888777665 6899999998877665 22222 4667899999999888754 4
Q ss_pred CeEEEEECCCceEee
Q 004207 704 NYISILDVETQVCRL 718 (768)
Q Consensus 704 g~I~IwD~~t~~~~~ 718 (768)
+.+.+.|..+.....
T Consensus 275 ~~V~vid~~~~~v~~ 289 (381)
T COG3391 275 GTVSVIDGATDRVVK 289 (381)
T ss_pred CeEEEEeCCCCceee
Confidence 889999988765544
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.99 E-value=0.025 Score=51.54 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=68.8
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207 558 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 558 I~sl~fSp---dg-~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~ 633 (768)
|+++++.. || +.|++|+.|..|+||+-+ +.+..+..+ +.|++++-... ..|+.+..+|+|-||+-.....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW-- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW-- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcceee--
Confidence 56666654 43 379999999999999854 667777654 46777776665 6799999999999998643221
Q ss_pred EEeecCCCCeEEEEEe---CCCCeEEEEEeCCCcEE
Q 004207 634 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR 666 (768)
Q Consensus 634 ~~~~~h~~~V~slafs---p~g~~lLaSgs~Dg~I~ 666 (768)
..+ .+..++++++. -+|..-|++|-.+|.|-
T Consensus 76 -RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 -RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122 23346666653 34555677888888764
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0035 Score=71.42 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=76.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeE-EEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE
Q 004207 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (768)
Q Consensus 598 ~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~-slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i 676 (768)
..|.-+.|+|.-.++|++..+|.|.++.+.- ..+.++.-|...++ +++|.|||+ ++++|-.||+|++.|++++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCce
Confidence 4578899999999999999999999988873 23566665666777 999999976 8889999999999999999888
Q ss_pred EE--EecCCCeeEEEEec
Q 004207 677 GV--FKCQSGATQMRFQP 692 (768)
Q Consensus 677 ~~--~~~~~~i~sl~fsp 692 (768)
.. +.....|.++.|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 77 55567788888864
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.90 E-value=0.054 Score=64.02 Aligned_cols=139 Identities=9% Similarity=0.023 Sum_probs=82.8
Q ss_pred CCeEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---------
Q 004207 556 SKVESCHFSPDGKLLATGG------HDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------- 618 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs------~Dg--~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D--------- 618 (768)
..+.+.+++|||+.++..- .|. .|.+++.. +.......+ ...+.-.|+|+|..|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3578899999999877654 244 44444542 222222233 237889999998888777533
Q ss_pred ---CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEE---EECCCCeeEEE-----Ee-c-CCCe
Q 004207 619 ---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY---WSINNGSCAGV-----FK-C-QSGA 685 (768)
Q Consensus 619 ---gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~i---WDl~sg~~i~~-----~~-~-~~~i 685 (768)
+.|.+.+++.++... ...+.|..+.|+|||..++++. ++.|.+ -....|. ... +. . ...+
T Consensus 427 ~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 427 PATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTA 499 (591)
T ss_pred CCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeecccCCcc
Confidence 223333443332211 2346799999999999888766 467776 3434443 111 11 1 2335
Q ss_pred eEEEEecCCCEEEEEEcCCe
Q 004207 686 TQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~ 705 (768)
..+.|..++. |+++..++.
T Consensus 500 ~~l~W~~~~~-L~V~~~~~~ 518 (591)
T PRK13616 500 VSLDWRTGDS-LVVGRSDPE 518 (591)
T ss_pred ccceEecCCE-EEEEecCCC
Confidence 7899999876 455554443
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.87 E-value=0.32 Score=50.46 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=93.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEE-
Q 004207 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS- 645 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~s- 645 (768)
..+++.|++.+.+..-|..+++....-.. ...|.+-+.- -|++++.|+..|.+++.+.+++.. +..+... +.|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~-~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVIL-ETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeeh-hhhccc
Confidence 45788999999999999999988865432 2334333322 367899999999999999999865 3222221 22322
Q ss_pred EEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe-eEEEEecCCCEEEEEEcCCeEEEE
Q 004207 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISIL 709 (768)
Q Consensus 646 lafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i-~sl~fsp~~~~llags~Dg~I~Iw 709 (768)
....+++. ++..|+.|++.+..|.++..++...+..+.+ .+-++.|-...|+++...|.|.-.
T Consensus 99 a~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 99 AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAV 162 (354)
T ss_pred eEEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEE
Confidence 22345554 7778999999999999999999888775553 345556644556666655554433
No 364
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.84 E-value=0.56 Score=49.43 Aligned_cols=169 Identities=12% Similarity=0.033 Sum_probs=107.1
Q ss_pred eEEEEecc-CCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCc
Q 004207 588 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (768)
Q Consensus 588 ~~~~tl~~-h~~~V~sl~fspdg~~LaTgs~Dg--tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~ 664 (768)
+++.++.. .....-.+.|..++.++-+.+.-| .|+.+|+.+++..........-.--.|+... +.++.-.-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence 34445532 223455778877777878877766 7999999998864443333333344555553 346656667899
Q ss_pred EEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc-----------------------
Q 004207 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----------------------- 721 (768)
Q Consensus 665 I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----------------------- 721 (768)
..+||..+.+.+..+...+.-..++ .++..|+.......|+++|..+.+....+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyA 189 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYA 189 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEE
T ss_pred EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEE
Confidence 9999999999999998777667777 446678888888899999998775544433
Q ss_pred ------eeEEeecCCCceEEec-------------cC---CCCeeEEEEeCCCCEEEEEEC
Q 004207 722 ------TLELWNMTENKTLTLS-------------AH---DKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 722 ------~I~iwd~~~~~~~~l~-------------~H---~~~I~sla~spdg~~LaSgs~ 760 (768)
.|...|..++.+.... .+ .+..+.|||+|..+.|+..|.
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5555677777776321 01 356889999988876655553
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.82 E-value=0.039 Score=66.44 Aligned_cols=142 Identities=13% Similarity=0.119 Sum_probs=95.9
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCeEEEEeccCCCC-EEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCCeeEEEee-
Q 004207 566 DGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFT- 637 (768)
Q Consensus 566 dg~~LaSg-s~Dg~I~VWdl~t~~~~~tl~~h~~~-V~sl~fsp-----dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~- 637 (768)
|.++|+.- .....|+-.|++.|+++..+..|... |.+++-.. +..-.++|-.+..|..||.+-....+....
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 44444433 45678999999999999999887654 55443221 133466777888999999986432121111
Q ss_pred ---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE-EEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207 638 ---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC-QSGATQMRFQPRLGRILAAAIENYISILDV 711 (768)
Q Consensus 638 ---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i-~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~ 711 (768)
.......|++-..+| .||+|+.+|.||+||- .|..- ..+.+ +.+|..|..+.+|.++++.+. ..|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 234567788777665 4778999999999994 33322 22333 688999999999988877664 56777765
No 366
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.12 Score=58.60 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=37.1
Q ss_pred cEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 578 ~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
.|.||+.. |+.+.++.-..+.|.++.|+.+. .|++...||++++||+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 48999865 56666654444889999999864 56667799999999986
No 367
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.78 E-value=0.092 Score=60.93 Aligned_cols=148 Identities=10% Similarity=0.080 Sum_probs=91.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCC------CEE--EEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeec
Q 004207 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~------~V~--sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~ 638 (768)
+..++.++.++.|+.+|..+++.+..+..... .+. .+... ++..++.++.++.|+-+|.++++. +-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~-~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ-VWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE-eeeecC
Confidence 44566677789999999999998877654322 010 11111 226788888999999999999885 322221
Q ss_pred CCCC-----e-EEEEEeCCCCeEEEEEe---------CCCcEEEEECCCCeeEEEEecCCC-------------------
Q 004207 639 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG------------------- 684 (768)
Q Consensus 639 h~~~-----V-~slafsp~g~~lLaSgs---------~Dg~I~iWDl~sg~~i~~~~~~~~------------------- 684 (768)
.... + .+..+.. . +++.++ .++.|..+|..+|+.+..+.....
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 1110 1 1122222 2 333433 367899999999998887764211
Q ss_pred --e-eEEEEecCCCEEEEEEcCC------------------eEEEEECCCceEeee
Q 004207 685 --A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLK 719 (768)
Q Consensus 685 --i-~sl~fsp~~~~llags~Dg------------------~I~IwD~~t~~~~~~ 719 (768)
+ ...++.+.++.+++++.++ .|.-+|..+++....
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~ 271 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF 271 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE
Confidence 0 1345566667788887665 678888888766544
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.39 Score=52.19 Aligned_cols=153 Identities=14% Similarity=0.062 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-----CCCCEEEEEEcCCCCEEEEEeC-----C----CcEEE
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA-----D----RTVRV 623 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-----h~~~V~sl~fspdg~~LaTgs~-----D----gtIrV 623 (768)
+.++..-..+..|+++.. -+.+++.+++..+..+.. .....+++...|+|.+.++... . ..-.|
T Consensus 68 ~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 444444445555665533 467777666555322211 1234678889999987776544 1 11244
Q ss_pred EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC--C----eeEEEEe--cCCCeeEEEEecCCC
Q 004207 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G----SCAGVFK--CQSGATQMRFQPRLG 695 (768)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s--g----~~i~~~~--~~~~i~sl~fsp~~~ 695 (768)
|-++.....++.+..+-..-+.|+|+|+++.++++=+..+.|.-|++.. + .....+. ..+..-.++...+|.
T Consensus 146 yr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 146 YRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN 225 (307)
T ss_pred EEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC
Confidence 5444222235566665666788999999997887766678888887752 1 1111111 134455677777776
Q ss_pred EEEEEEcCC-eEEEEECC
Q 004207 696 RILAAAIEN-YISILDVE 712 (768)
Q Consensus 696 ~llags~Dg-~I~IwD~~ 712 (768)
+.+++...+ .|.+|+..
T Consensus 226 lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred EEEecccCCceEEEECCC
Confidence 665444443 77777776
No 369
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.76 E-value=0.38 Score=54.59 Aligned_cols=151 Identities=10% Similarity=0.020 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-------~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
+.|.++.|+.+. .|++...||.+++||+.. +....+ ......|..+.+..+|-.++| .++.|.+..--.
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCcc
Confidence 789999998754 455666899999999863 331111 111122223333335533333 344443332211
Q ss_pred CCeeEEEeecCCC---------CeEE-EEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEE
Q 004207 629 PDYSLRTFTGHST---------TVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 698 (768)
Q Consensus 629 ~~~~~~~~~~h~~---------~V~s-lafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~ll 698 (768)
.....+.+..-.. .+.. ..++.+.. +.+....++.|.+.+-.... .+...+++..+++||++++++
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~---~i~~~~~i~~iavSpng~~iA 232 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFK---QIDSDGPIIKIAVSPNGKFIA 232 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEccccc---cccCCCCeEEEEECCCCCEEE
Confidence 1111111100000 0111 12233322 22233334455544332211 133346899999999999998
Q ss_pred EEEcCCeEEEEECCCc
Q 004207 699 AAAIENYISILDVETQ 714 (768)
Q Consensus 699 ags~Dg~I~IwD~~t~ 714 (768)
.-..+|.+.|....-.
T Consensus 233 l~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 233 LFTDSGNLWVVSSDFS 248 (410)
T ss_pred EEECCCCEEEEECccc
Confidence 8888899888765443
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.59 E-value=0.069 Score=63.13 Aligned_cols=150 Identities=13% Similarity=0.155 Sum_probs=85.1
Q ss_pred CCEEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC--------
Q 004207 598 QWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-------- 661 (768)
Q Consensus 598 ~~V~sl~fspdg~~LaTgs------~Dg--tIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~-------- 661 (768)
..+.+.+++|+++.++... .|. .|.+++.. ........+ ...++-.|+|+|+.+.++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999999877665 244 45555543 222222333 248889999998766554322
Q ss_pred ---CCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEE---EECCCceEeeecceeEEeecCCCceEE
Q 004207 662 ---NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVETQVCRLKLQTLELWNMTENKTLT 735 (768)
Q Consensus 662 ---Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~I---wD~~t~~~~~~~~~I~iwd~~~~~~~~ 735 (768)
.+.+.+.+++.+.... .....|..+.|+|+|.+++... ++.|++ -....+.. . + .....
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~--~-----l-----~~~~~ 490 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY--A-----L-----TNPRE 490 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce--e-----e-----cccEE
Confidence 2334444554443332 3346799999999999988766 466665 33222220 0 0 01111
Q ss_pred ec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 736 LS-AHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 736 l~-~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
+. .-...+.++.|..++.++ ++..++...+|
T Consensus 491 l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~ 522 (591)
T PRK13616 491 VGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVW 522 (591)
T ss_pred eecccCCccccceEecCCEEE-EEecCCCCceE
Confidence 21 223335788899888754 55544444444
No 371
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.023 Score=68.45 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=72.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeE
Q 004207 566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~-~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~ 644 (768)
-+.+++.|+..|.|...|+... .....-..-.++|++++|+.+|.+++.|-.+|.|.+||+..++. ++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence 4557888988899999887652 21122233457899999999999999999999999999998664 666666666655
Q ss_pred EEE---EeCCCCeEEEEEeCCCcEEEEEC
Q 004207 645 SLD---FHPSKEDLLCSCDNNSEIRYWSI 670 (768)
Q Consensus 645 sla---fsp~g~~lLaSgs~Dg~I~iWDl 670 (768)
++- +..++. .+.+++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 554 444444 5557776665 5554
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.32 Score=51.15 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=89.7
Q ss_pred eEEEEEcCCCC-EEEEEeCCCc-EEEEECCCCeEEEEeccCCCC--EEEEEEcCCCCEEEEEeCC-----CcEEEEECCC
Q 004207 558 VESCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTEN 628 (768)
Q Consensus 558 I~sl~fSpdg~-~LaSgs~Dg~-I~VWdl~t~~~~~tl~~h~~~--V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t 628 (768)
...|+|+|... -++.+-.-|+ ..|+|..+.....++...++. .-.-.|||||.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 34577777443 4555555554 567888776655554322211 1123599999999876554 6899999997
Q ss_pred CCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeC-----------------CCcEEEEECCCCeeEEEEec-----CCCee
Q 004207 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------NSEIRYWSINNGSCAGVFKC-----QSGAT 686 (768)
Q Consensus 629 ~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~-----------------Dg~I~iWDl~sg~~i~~~~~-----~~~i~ 686 (768)
+-..+-.+..|.-....+.|.+||+.++++.+. .-.+.+.|..+|..+..... .-.+.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 666677788888888899999999877655430 11344445455555443332 23466
Q ss_pred EEEEecCCCEEEEEE
Q 004207 687 QMRFQPRLGRILAAA 701 (768)
Q Consensus 687 sl~fsp~~~~llags 701 (768)
.++..+++..++.+-
T Consensus 230 Hld~g~dgtvwfgcQ 244 (366)
T COG3490 230 HLDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeeCCCCcEEEEEE
Confidence 677777765544443
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.48 E-value=0.086 Score=57.25 Aligned_cols=144 Identities=13% Similarity=0.184 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCEEEEEeC-----C----CcEEEEECC-CCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEE
Q 004207 557 KVESCHFSPDGKLLATGGH-----D----KKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWD 625 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~-----D----g~I~VWdl~-t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D-gtIrVWD 625 (768)
..+.+.+.|+|.+.++... . ..-.||.+. .+..+..+..+-..-+.|+||||++.|+.+... +.|+.|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 4566778888887665443 0 112455555 566666666655666889999999888777654 7888888
Q ss_pred CCC--C----CeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC-CcEEEEECCCCeeEEEEecC-CCeeEEEEe-cCCCE
Q 004207 626 TEN--P----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKCQ-SGATQMRFQ-PRLGR 696 (768)
Q Consensus 626 l~t--~----~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D-g~I~iWDl~sg~~i~~~~~~-~~i~sl~fs-p~~~~ 696 (768)
+.. + ......+....+..-.++...+|...+ ++..+ +.|.+|+.. ++.+..+... ..+++++|- ++.+.
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~-~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~ 269 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV-AAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNT 269 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE-ecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCE
Confidence 762 1 111122223456667788888876443 33333 389999988 9999998876 678888884 45555
Q ss_pred EEEEEc
Q 004207 697 ILAAAI 702 (768)
Q Consensus 697 llags~ 702 (768)
|++.+.
T Consensus 270 L~iTs~ 275 (307)
T COG3386 270 LYITSA 275 (307)
T ss_pred EEEEec
Confidence 555554
No 374
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.44 E-value=0.12 Score=62.30 Aligned_cols=127 Identities=8% Similarity=0.077 Sum_probs=85.2
Q ss_pred eCCCcEEEEECCCCCeeEEEeecCCCC-eEEEEEeC-----CCCeEEEEEeCCCcEEEEECCCCe--eEE----EEecCC
Q 004207 616 SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG----VFKCQS 683 (768)
Q Consensus 616 s~DgtIrVWDl~t~~~~~~~~~~h~~~-V~slafsp-----~g~~lLaSgs~Dg~I~iWDl~sg~--~i~----~~~~~~ 683 (768)
.....|+-.|++.|+. +..+..|... |..++-.. +....| .|-.+..|+.||.|-.. ++. .+....
T Consensus 501 ~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccccccccCC
Confidence 3457899999999886 7777777643 55543221 112233 56668899999998632 332 122344
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 684 ~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
...|++-+.+ ++|++|+.+|.|++||--... ....+.+-..+|.+|+.+.||++|++.+..
T Consensus 579 ~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~----------------AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 579 NFSCFATTED-GYIAVGSNKGDIRLYDRLGKR----------------AKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred CceEEEecCC-ceEEEEeCCCcEEeecccchh----------------hhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 5677776665 789999999999999842211 011344667899999999999998877654
No 375
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.38 E-value=0.0034 Score=63.64 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=78.1
Q ss_pred EEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCC-eeEEEEe-cCCCeeE-
Q 004207 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQ- 687 (768)
Q Consensus 611 ~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg-~~i~~~~-~~~~i~s- 687 (768)
.|...+.||.|+-++++..+...+...-|.....-+.++ .-+++|+.+|.|.+|...-. .....+. ....|.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~----~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTAS----AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccC----ceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 344456788888888875443333332232222222222 23557888999999987621 1111111 1122222
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCCEEEEE--ECCCcE
Q 004207 688 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASA--SHDKCV 764 (768)
Q Consensus 688 l~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSg--s~DG~V 764 (768)
+..-.++.+..+++.++.|+.|++.-.+.... ...|. .++..+..+..+.+|+++ |.|..+
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~----------------~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~ 171 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY----------------VGQHNFESGEELIVVGSDEFLKIADTSHDRVL 171 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeee----------------eccccCCCcceeEEecCCceEEeeccccchhh
Confidence 22233444677888899888887765443321 12444 456666666677788888 888888
Q ss_pred EEeC
Q 004207 765 KIWK 768 (768)
Q Consensus 765 ~IWD 768 (768)
+.|+
T Consensus 172 k~W~ 175 (238)
T KOG2444|consen 172 KKWN 175 (238)
T ss_pred hhcc
Confidence 8886
No 376
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.35 E-value=1.3 Score=49.73 Aligned_cols=198 Identities=15% Similarity=0.152 Sum_probs=94.0
Q ss_pred EEEcCCCCEEEEEeC------CCcEEEEECCCCeEEEEeccCC---CCEEEEEEcCCCCEEEEEeC--------------
Q 004207 561 CHFSPDGKLLATGGH------DKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSSA-------------- 617 (768)
Q Consensus 561 l~fSpdg~~LaSgs~------Dg~I~VWdl~t~~~~~tl~~h~---~~V~sl~fspdg~~LaTgs~-------------- 617 (768)
+..-|+|+.++++-. -|-+.++|-++.++...++... ..-+++.|.|..+.++|..+
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 444578888887622 2468899999999888775432 34567888998888888765
Q ss_pred ------CCcEEEEECCCCCeeEEEeecCC--CCeEEEEEe--CCCCeEEEEEeCCCcEEEEEC-CCCe----eEEEEec-
Q 004207 618 ------DRTVRVWDTENPDYSLRTFTGHS--TTVMSLDFH--PSKEDLLCSCDNNSEIRYWSI-NNGS----CAGVFKC- 681 (768)
Q Consensus 618 ------DgtIrVWDl~t~~~~~~~~~~h~--~~V~slafs--p~g~~lLaSgs~Dg~I~iWDl-~sg~----~i~~~~~- 681 (768)
..+|++||+.+.+. ++++.-.. ..+..|.|. |+...-|+.|.-..+|..|-- +.++ .+..+..
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~-~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKL-LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp HHHH-S--EEEEEETTTTEE-EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred hhcccccCeEEEEECCCCcE-eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 35899999998765 55544322 235566664 445555666655566665543 3332 1111211
Q ss_pred -----------------CCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCceEeeecceeEEeecC-CCceEEe--ccCC
Q 004207 682 -----------------QSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQTLELWNMT-ENKTLTL--SAHD 740 (768)
Q Consensus 682 -----------------~~~i~sl~fsp~~~~llags-~Dg~I~IwD~~t~~~~~~~~~I~iwd~~-~~~~~~l--~~H~ 740 (768)
..-|+.+.++.+.++|++++ .+|.|+.||+...........|.+=..- .+..... ..-.
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 13378899999999988888 5899999999875443333333321110 0000000 0112
Q ss_pred CCeeEEEEeCCCCEEEEEE
Q 004207 741 KLVSSLAASTVNGMVASAS 759 (768)
Q Consensus 741 ~~I~sla~spdg~~LaSgs 759 (768)
+...-|..|-||+.|+...
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 2345677788887766553
No 377
>PRK10115 protease 2; Provisional
Probab=96.22 E-value=1.3 Score=53.74 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=67.9
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q 004207 557 KVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWD 625 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~D-----g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D------gtIrVWD 625 (768)
.+..+.|+|||++|+.+... ..|+|.|+.+++.+........ ..++|.+|++.|+.+..+ ..|+.|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 36778999999988865332 2588889988864433222222 469999998876665443 3678888
Q ss_pred CCCCC-eeEEEeecCCCCeE-EEEEeCCCCeEEEEEe--CCCcEEEEEC
Q 004207 626 TENPD-YSLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSI 670 (768)
Q Consensus 626 l~t~~-~~~~~~~~h~~~V~-slafsp~g~~lLaSgs--~Dg~I~iWDl 670 (768)
+.++. .....+........ .+..+.++..+++.+. .++.+.+|+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88762 11233333223333 2233337776665443 3467888885
No 378
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.19 E-value=1.5 Score=51.43 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=89.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC-EEEEEEcC--CCCEEEEEe------CCCcEEEEECCCCCeeEEEee
Q 004207 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFT 637 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~-V~sl~fsp--dg~~LaTgs------~DgtIrVWDl~t~~~~~~~~~ 637 (768)
+..++.++.|+.|..+|.++++.+......... -..+.-+| .+..++++. .+|.|+.+|.++++..=....
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 346777888999999999999998766421100 01111122 123455543 268899999998875221111
Q ss_pred cC------------------------------CCCe-EEEEEeCCCCeEEEEEeC----CC-----------cEEEEECC
Q 004207 638 GH------------------------------STTV-MSLDFHPSKEDLLCSCDN----NS-----------EIRYWSIN 671 (768)
Q Consensus 638 ~h------------------------------~~~V-~slafsp~g~~lLaSgs~----Dg-----------~I~iWDl~ 671 (768)
.. ...+ ..+++.+..+.+++..+. ++ .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 00 0111 134566654534432221 12 57778999
Q ss_pred CCeeEEEEec-CCC---------eeEEEEecCCC---EEEEEEcCCeEEEEECCCceEee
Q 004207 672 NGSCAGVFKC-QSG---------ATQMRFQPRLG---RILAAAIENYISILDVETQVCRL 718 (768)
Q Consensus 672 sg~~i~~~~~-~~~---------i~sl~fsp~~~---~llags~Dg~I~IwD~~t~~~~~ 718 (768)
+|+....+.. ++. ..-+.+..+++ .++.+..+|.++++|.++++.+.
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 9998877764 221 12223334555 56688899999999999998753
No 379
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.14 E-value=0.6 Score=54.75 Aligned_cols=111 Identities=5% Similarity=-0.068 Sum_probs=67.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CCEE---E-------EEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~-~~V~---s-------l~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~ 635 (768)
+..|++++.++.|+-+|..+++.+..+.... ..+. + +++. +..++.++.|+.|.-.|.++++.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778899999999999988764321 1111 1 1221 346778889999999999998863222
Q ss_pred ee-cCC--CCeEE-EEEeCCCCeEEEEEe-----CCCcEEEEECCCCeeEEEEec
Q 004207 636 FT-GHS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKC 681 (768)
Q Consensus 636 ~~-~h~--~~V~s-lafsp~g~~lLaSgs-----~Dg~I~iWDl~sg~~i~~~~~ 681 (768)
-. .+. ..+++ ..+. + ..+++..+ .+|.|..+|.++|+.+..+..
T Consensus 147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 11 111 11111 1111 2 33443222 268999999999998876553
No 380
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.06 E-value=1.2 Score=49.58 Aligned_cols=142 Identities=14% Similarity=0.087 Sum_probs=78.8
Q ss_pred EEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207 561 CHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (768)
Q Consensus 561 l~fSpdg~~La-Sgs~Dg~--I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~ 637 (768)
=+|.+||+.|+ ++..||. +.+.|+.+++......+.........++++.+.++-...+..|+..|+++.+. ...+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence 35778897655 4444554 66668888887755443323233566788888887776777899999998765 34444
Q ss_pred cCCCCeEEEEEe--CCCCeEEEEEe---C-------------------CCcEEEEECCCCeeEEEEecCCCeeEEEEecC
Q 004207 638 GHSTTVMSLDFH--PSKEDLLCSCD---N-------------------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 693 (768)
Q Consensus 638 ~h~~~V~slafs--p~g~~lLaSgs---~-------------------Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~ 693 (768)
.....+-...|. .++. .++.+- . .+.|...|+.+|+....+....-+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 445555445564 3333 332221 1 13466678888888777776677788999998
Q ss_pred CCEEEEEEcCC
Q 004207 694 LGRILAAAIEN 704 (768)
Q Consensus 694 ~~~llags~Dg 704 (768)
...+++-|.+|
T Consensus 199 dp~li~fCHEG 209 (386)
T PF14583_consen 199 DPTLIMFCHEG 209 (386)
T ss_dssp EEEEEEEEE-S
T ss_pred CCCEEEEeccC
Confidence 77777766543
No 381
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.03 E-value=0.26 Score=52.13 Aligned_cols=137 Identities=16% Similarity=0.164 Sum_probs=80.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE----------
Q 004207 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---------- 677 (768)
Q Consensus 608 dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~---------- 677 (768)
.++.|+.|+.+| |.++++........... ...|..+...++-+.+++.+ |+.|+++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhcccccccccccccc
Confidence 467899999888 99999943333233332 33499999999877666554 5999999987643333
Q ss_pred -----EEecCCCeeEEE--EecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207 678 -----VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST 750 (768)
Q Consensus 678 -----~~~~~~~i~sl~--fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp 750 (768)
.+....++..++ -...+...+++.....|.+|.+........ ....-..-...+.+++|.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~------------~~~ke~~lp~~~~~i~~~- 147 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS------------KLLKEISLPDPPSSIAFL- 147 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc------------ceeEEEEcCCCcEEEEEe-
Confidence 111122333333 223445566666666888877655311100 011111223567888888
Q ss_pred CCCEEEEEECCCc
Q 004207 751 VNGMVASASHDKC 763 (768)
Q Consensus 751 dg~~LaSgs~DG~ 763 (768)
++.|+.|..++.
T Consensus 148 -~~~i~v~~~~~f 159 (275)
T PF00780_consen 148 -GNKICVGTSKGF 159 (275)
T ss_pred -CCEEEEEeCCce
Confidence 566777766554
No 382
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.073 Score=64.55 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=90.3
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEE-----------EeccCCCCEEEEEEcCC-CCEEEEEeCCCcEE
Q 004207 557 KVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKS-----------TLEEHTQWITDVRFSPS-LSRLATSSADRTVR 622 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSg--s~Dg~I~VWdl~t~~~~~-----------tl~~h~~~V~sl~fspd-g~~LaTgs~DgtIr 622 (768)
+|..+.+.+|+...++. +.+-.|.+||+++..... +.......+.++.|+|. ....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666677754443 334478889987643221 11122234668889986 33467778899999
Q ss_pred EEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-----CCCeeEEEEecCCCEE
Q 004207 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRI 697 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-----~~~i~sl~fsp~~~~l 697 (768)
|..+......+..+. ....++|++|+|.|..++ .|...|++.-|... .++...+.+ ...|.+|+|.....++
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceee-EecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 988765443333332 456789999999988555 78889999888654 344444432 3568999998875555
Q ss_pred EE
Q 004207 698 LA 699 (768)
Q Consensus 698 la 699 (768)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 44
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.24 Score=55.97 Aligned_cols=130 Identities=9% Similarity=0.090 Sum_probs=87.0
Q ss_pred EEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCe-------EEEEEeCCCcEEEEECCCCe--eEEEEe--
Q 004207 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-------LLCSCDNNSEIRYWSINNGS--CAGVFK-- 680 (768)
Q Consensus 612 LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~-------lLaSgs~Dg~I~iWDl~sg~--~i~~~~-- 680 (768)
|.++..-..|+--|++.|+. +..+.-|.. |.-+.+.|+.+. -| .|-.|..|+-||.|-.. .+....
T Consensus 349 l~~~~~~~~l~klDIE~GKI-VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKI-VEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeeccccee-eeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceeeeeecc
Confidence 34455556788889998886 777776665 777778776431 22 46668899999988422 222222
Q ss_pred ---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEE
Q 004207 681 ---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 757 (768)
Q Consensus 681 ---~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaS 757 (768)
......|.+-.. .++|++|+.+|.|++||--.... ...+.+-..+|..|..+.+|++|++
T Consensus 426 qy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~A----------------KTAlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRA----------------KTALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred ccccccccceeeecC-CceEEEeecCCcEEeehhhhhhh----------------hhcccccCCceeeEEeeccCcEEEE
Confidence 233455555555 47899999999999998622111 1135577788999999999998877
Q ss_pred EECC
Q 004207 758 ASHD 761 (768)
Q Consensus 758 gs~D 761 (768)
.+..
T Consensus 489 Tc~t 492 (644)
T KOG2395|consen 489 TCKT 492 (644)
T ss_pred eccc
Confidence 6654
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.77 E-value=0.02 Score=58.25 Aligned_cols=134 Identities=11% Similarity=0.043 Sum_probs=72.5
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEE
Q 004207 570 LATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (768)
Q Consensus 570 LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slaf 648 (768)
|..-+.|+.|.-+++..-+....- ..|...-..+.+ +..|++|+.+|.|.+|...-.......+..-...|.++--
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---CceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 334456777777766542221110 112111111222 4679999999999999987332212222222233433332
Q ss_pred eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 649 sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
.-+...+.|++..||.|+.|++.-.+.+.....+.. -.+..+++.+.+..|.+|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-------~~~e~~ivv~sd~~i~~a~~S~ 167 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-------ESGEELIVVGSDEFLKIADTSH 167 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccC-------CCcceeEEecCCceEEeecccc
Confidence 222233888999999999999987766655443321 2234455555556666665544
No 385
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.72 E-value=0.5 Score=54.30 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=89.5
Q ss_pred CCCeEEEEEcCCCCEEE-EEe--CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECC
Q 004207 555 TSKVESCHFSPDGKLLA-TGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~La-Sgs--~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspd----g~~LaTgs~DgtIrVWDl~ 627 (768)
-.+|..++|. ||+.++ +.- ..|.+++=| .+.+. .-..|..+.|.|- ...|+..-..+.|.||.+-
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 4578899997 666543 432 334444332 12333 3345899999984 3356666788899999875
Q ss_pred -----CCCeeEEEeecCC---CC--eEEEEEeCCCCeEEEEEeCCCcEEEEECCC--CeeEEEEecCCCeeEEEEecCCC
Q 004207 628 -----NPDYSLRTFTGHS---TT--VMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKCQSGATQMRFQPRLG 695 (768)
Q Consensus 628 -----t~~~~~~~~~~h~---~~--V~slafsp~g~~lLaSgs~Dg~I~iWDl~s--g~~i~~~~~~~~i~sl~fsp~~~ 695 (768)
..+. +....++- -+ -..+.|||... +|++-.....-.+++++. ......++..+.|.|.+|..||.
T Consensus 91 ~s~~e~~K~-l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 91 PSTTERNKL-LMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred cCccccccc-eeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 2222 11111111 11 24577999976 554444333334566653 34455667788899999999999
Q ss_pred EEEEEEc-CCeEEEEECCC
Q 004207 696 RILAAAI-ENYISILDVET 713 (768)
Q Consensus 696 ~llags~-Dg~I~IwD~~t 713 (768)
+|+++-. .=.-+|||-..
T Consensus 169 RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEEeCCeEEEEEecCch
Confidence 9776543 34457787544
No 386
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.70 E-value=0.21 Score=57.20 Aligned_cols=137 Identities=10% Similarity=0.082 Sum_probs=85.5
Q ss_pred CCeEEEEEcCC----CCEEEEEeCCCcEEEEECC-----CCeEEEEeccC-C--CC--EEEEEEcCCCCEEEEEeCCCcE
Q 004207 556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEH-T--QW--ITDVRFSPSLSRLATSSADRTV 621 (768)
Q Consensus 556 ~~I~sl~fSpd----g~~LaSgs~Dg~I~VWdl~-----t~~~~~tl~~h-~--~~--V~sl~fspdg~~LaTgs~DgtI 621 (768)
..|..++|.|- ...|+..-..+.|.||-+. ..+.+..-..+ . -+ -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 44899999994 3245555677899999765 22322221111 1 11 2356799998888777666665
Q ss_pred EEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe-----eEEEEecCCCeeEEEEec
Q 004207 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKCQSGATQMRFQP 692 (768)
Q Consensus 622 rVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~-----~i~~~~~~~~i~sl~fsp 692 (768)
.++++......+..-....+.|.|.+|..||.+++++.+..=.-++||-.... .--+|...+.|.++.-.-
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ 212 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATV 212 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEec
Confidence 67777654443444345668899999999999988877766667889864322 112334445555554443
No 387
>PHA02713 hypothetical protein; Provisional
Probab=95.67 E-value=0.39 Score=56.70 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=35.8
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCe
Q 004207 566 DGKLLATGGHD------KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDY 631 (768)
Q Consensus 566 dg~~LaSgs~D------g~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~Dg-----tIrVWDl~t~~~ 631 (768)
++.++++||.+ ..+..||..+..-. ..+.........+.+ ++++.+.|+.++ +|..||..+...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 67777777754 34778887765322 111111111222222 467777887764 488899887543
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.13 Score=57.88 Aligned_cols=143 Identities=16% Similarity=0.197 Sum_probs=96.9
Q ss_pred cCCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-------EEEEEeCCCcEEEEECCCCCe-eEE
Q 004207 564 SPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDY-SLR 634 (768)
Q Consensus 564 Spdg~~L-aSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-------~LaTgs~DgtIrVWDl~t~~~-~~~ 634 (768)
..+.++| .++..-..|+-.|++.|+++..+..|.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-... .+.
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 3355544 4555666788899999999999988776 88888888643 234566788899999874332 233
Q ss_pred EeecC----CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-EEec-CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 635 TFTGH----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKC-QSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 635 ~~~~h----~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~~~~-~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
...+| .....|.+-..+| .+++|+.+|.|++||- .+..-+ .+.+ ...|..|..+.+|.+|++.+ +.++.+
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLL 496 (644)
T ss_pred eeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEE
Confidence 33332 2345566655554 5778999999999996 343322 2332 67799999999988776655 566666
Q ss_pred EEC
Q 004207 709 LDV 711 (768)
Q Consensus 709 wD~ 711 (768)
.|+
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 665
No 389
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.65 E-value=1.2 Score=48.72 Aligned_cols=154 Identities=8% Similarity=0.046 Sum_probs=95.2
Q ss_pred CEEEEEeCCCcEEEEECC-CCeEEEEe----ccCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE-EEeec--
Q 004207 568 KLLATGGHDKKAVLWCTE-SFTVKSTL----EEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTG-- 638 (768)
Q Consensus 568 ~~LaSgs~Dg~I~VWdl~-t~~~~~tl----~~h~~~V~-sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~-~~~~~-- 638 (768)
+-|.+-|.||++.-..++ .|+...+. ..-..++. .-++...+..++-.+.+|.|+--|+....... ..+.-
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 457778889999888877 45544221 11222222 33444455556667899999998887654221 12211
Q ss_pred --------CCCCeEEEEEeCCCCeEEEEEeC--C-------CcEEEEECCCCeeEEEEecCCCeeEEEEecCCCE-EEEE
Q 004207 639 --------HSTTVMSLDFHPSKEDLLCSCDN--N-------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-ILAA 700 (768)
Q Consensus 639 --------h~~~V~slafsp~g~~lLaSgs~--D-------g~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~-llag 700 (768)
-.+...-+++++..+++++.-.. + ..|.+||+.+++.+..+.....+.+|.++.+..- |++.
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEE
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEE
Confidence 01233447788766666654321 1 2588889999999999998888889999987764 4454
Q ss_pred E-cCCeEEEEECCCceEeeecc
Q 004207 701 A-IENYISILDVETQVCRLKLQ 721 (768)
Q Consensus 701 s-~Dg~I~IwD~~t~~~~~~~~ 721 (768)
+ .++.|.+||..+++....+.
T Consensus 308 ~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 308 SAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ETTTTEEEEEETTT--EEEEE-
T ss_pred cCCCCeEEEEeCcCCcEEeehh
Confidence 4 47899999999987765543
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.56 Score=49.74 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=80.2
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee-cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC
Q 004207 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (768)
Q Consensus 594 ~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~-~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s 672 (768)
.+-...|.++.|+|+.+.|++......-.||-...|.. ++++. ..-.....|.+..++. ++++--.+..+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcC
Confidence 34445699999999999999888888777776666664 44332 1123355677776644 444666788888887765
Q ss_pred CeeEEEE-----e-----c-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 673 GSCAGVF-----K-----C-QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 673 g~~i~~~-----~-----~-~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
...+..+ . . ..+...++|+|....++++-.-+-+.||.+..
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 5322211 1 1 34577899999999999988888788777653
No 391
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.58 E-value=0.95 Score=54.75 Aligned_cols=82 Identities=26% Similarity=0.329 Sum_probs=56.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----------CCeE--E-EEe--------ccCCCCEEEEEEcCC---
Q 004207 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----------SFTV--K-STL--------EEHTQWITDVRFSPS--- 608 (768)
Q Consensus 553 ~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~----------t~~~--~-~tl--------~~h~~~V~sl~fspd--- 608 (768)
.-.-.|..|.++++|.+|+..|..|.+.+. +. .++. . +++ ..+...|..+.|+|.
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcEEEEE-eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 334468999999999999999887654442 21 1111 1 111 124457899999996
Q ss_pred CCEEEEEeCCCcEEEEECCCCCeeEEE
Q 004207 609 LSRLATSSADRTVRVWDTENPDYSLRT 635 (768)
Q Consensus 609 g~~LaTgs~DgtIrVWDl~t~~~~~~~ 635 (768)
+.+|++-..|++||+||+.....+..+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEE
Confidence 578999999999999999865544433
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.57 E-value=0.42 Score=56.42 Aligned_cols=125 Identities=11% Similarity=0.130 Sum_probs=80.7
Q ss_pred ceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCCEEEEEEc--CCCCEEEEEeCCC
Q 004207 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADR 619 (768)
Q Consensus 543 ~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~-~h~~~V~sl~fs--pdg~~LaTgs~Dg 619 (768)
..+....++...-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+...
T Consensus 17 ~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 17 IEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred EEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence 3444455555555566667666655555554455679999998877554332 346789999995 5789999999999
Q ss_pred cEEEEECC-----C--CC-eeEE--EeecCC-CCeEEEEEeCCCCeEEEEEeCCCcEEEEEC
Q 004207 620 TVRVWDTE-----N--PD-YSLR--TFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (768)
Q Consensus 620 tIrVWDl~-----t--~~-~~~~--~~~~h~-~~V~slafsp~g~~lLaSgs~Dg~I~iWDl 670 (768)
.|.+|--. . +. ..++ .+..|+ .+|.+..|.++|..++ |+ +..+.|+|-
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV--~s-GNqlfv~dk 155 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV--GS-GNQLFVFDK 155 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE--Ee-CCEEEEECC
Confidence 99998542 1 11 1122 123333 5799999999976333 32 347888874
No 393
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.57 E-value=4.2 Score=49.99 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=93.6
Q ss_pred CCCCCeEEEEEc---C----CCCEEEEEeCCCcEEEEEC------CC---------CeEEEEecc---CCCCEEEEEEcC
Q 004207 553 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCT------ES---------FTVKSTLEE---HTQWITDVRFSP 607 (768)
Q Consensus 553 ~H~~~I~sl~fS---p----dg~~LaSgs~Dg~I~VWdl------~t---------~~~~~tl~~---h~~~V~sl~fsp 607 (768)
.-..+|..|+|. . ..++|++=. ...+.|+.. .. ..++..+.. ...+..+|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 223555543 456777661 11 123334432 234678999999
Q ss_pred C-CCEEEEEeCCCcEEEEECCCC----CeeEEEeecCC----------CCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC
Q 004207 608 S-LSRLATSSADRTVRVWDTENP----DYSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (768)
Q Consensus 608 d-g~~LaTgs~DgtIrVWDl~t~----~~~~~~~~~h~----------~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s 672 (768)
. ...||+....|...|||+... ...+.....+. .....|.|.++-..+| +|+ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 4 568999999999999999211 11111111111 2334788987766566 454 45789999997
Q ss_pred CeeEE---EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 673 GSCAG---VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 673 g~~i~---~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
..... .......|..+.-++.....+..-+...|..+|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 75533 222245577777777633322233346677788776
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.48 E-value=2.2 Score=52.13 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=69.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC--------EEEEEEcC----------------CCCEEEEEeCCCcEE
Q 004207 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR 622 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~--------V~sl~fsp----------------dg~~LaTgs~DgtIr 622 (768)
+..|+.++.++.|.-.|..+++.+..+...... ...+.+.. .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777778889999999999998877532211 11233321 234788889999999
Q ss_pred EEECCCCCeeEEEeecCCCCe-------------EEEEEeC--CCCeEEEEEeC----------CCcEEEEECCCCeeEE
Q 004207 623 VWDTENPDYSLRTFTGHSTTV-------------MSLDFHP--SKEDLLCSCDN----------NSEIRYWSINNGSCAG 677 (768)
Q Consensus 623 VWDl~t~~~~~~~~~~h~~~V-------------~slafsp--~g~~lLaSgs~----------Dg~I~iWDl~sg~~i~ 677 (768)
-.|.++++.+- .+. ..+.| ..+.-.| .++ ++++|+. +|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~W-~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCE-DFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEE-Eec-CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999988642 221 11111 0011111 123 3334432 6889999999999988
Q ss_pred EEec
Q 004207 678 VFKC 681 (768)
Q Consensus 678 ~~~~ 681 (768)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 7763
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.46 E-value=0.91 Score=53.72 Aligned_cols=107 Identities=11% Similarity=0.099 Sum_probs=59.0
Q ss_pred CCCEEEEEeCC-C-----cEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCee
Q 004207 566 DGKLLATGGHD-K-----KAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYS 632 (768)
Q Consensus 566 dg~~LaSgs~D-g-----~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~Dg-----tIrVWDl~t~~~~ 632 (768)
++.++++||.| | ++..||..+.+=. ..+...........+ +|.+.++|+.|| +|-.||.++.+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence 56788899988 3 5677777665421 111111111111112 477888999987 5888888876542
Q ss_pred EEEeecCCCCeEEEEEeCCCCeEEEEEeCCC------cEEEEECCCCeeE
Q 004207 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS------EIRYWSINNGSCA 676 (768)
Q Consensus 633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg------~I~iWDl~sg~~i 676 (768)
... .............-+..++++|+.++ +|..||..+....
T Consensus 410 ~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 410 PVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred ccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 211 11112222322222356777877543 5677888766543
No 396
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.45 E-value=2.7 Score=46.78 Aligned_cols=191 Identities=14% Similarity=0.146 Sum_probs=107.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEc----CCCCE--EEEEe-CC---CcEEEEECCCCCeeEEE
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLSR--LATSS-AD---RTVRVWDTENPDYSLRT 635 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fs----pdg~~--LaTgs-~D---gtIrVWDl~t~~~~~~~ 635 (768)
...+|+....++-+.+||++. +.+..+. .+.++.|... -.++. |+.++ .+ .+|++|.+......+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 455777777888899999974 5555553 2344444332 12332 34443 32 47999987642222333
Q ss_pred eec-------CCCCeEEEEEe--C-CCCeEEEEEeCCCcEEEEECC---CC----eeEEEEecCCCeeEEEEecCCCEEE
Q 004207 636 FTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRIL 698 (768)
Q Consensus 636 ~~~-------h~~~V~slafs--p-~g~~lLaSgs~Dg~I~iWDl~---sg----~~i~~~~~~~~i~sl~fsp~~~~ll 698 (768)
+.. ....++.+|+. + ++..++++.+.+|.+.-|-+. .+ +.++.|.....+..|......++|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 321 12346777763 3 456667778889998888764 33 4688888888999999999999999
Q ss_pred EEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEe--CCC-CEEEEEE-CCCcEEEeC
Q 004207 699 AAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAS--TVN-GMVASAS-HDKCVKIWK 768 (768)
Q Consensus 699 ags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~s--pdg-~~LaSgs-~DG~V~IWD 768 (768)
.+-.+-.|.-|+.+....... .+.+...+ ......|-.|++- .++ .||++++ .+++..|||
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~----~~v~~~~g-----~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDR----TLVASADG-----DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEETTTEEEEEESSCCC-S------EEEEEBSS-----SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EecCccEEEEEecCCCCCCcc----eeeecccc-----cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 999998888888764321110 00000000 0123456666653 333 4666555 466777774
No 397
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.37 E-value=3.3 Score=44.46 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCeEEEEecc-----CCCCEEEEEEcCCCC------------EEE
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA 613 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~-------t~~~~~tl~~-----h~~~V~sl~fspdg~------------~La 613 (768)
-+.|+|+|.+.+.++....+...+||.. ...++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999999888888888899999986 1223444432 124577888874322 367
Q ss_pred EEeCCCcEEEEECCCCCe----eEEEee-cCCCCe-EEEEEeCC--CCeEEEEEeCCCcEEEEECC
Q 004207 614 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHPS--KEDLLCSCDNNSEIRYWSIN 671 (768)
Q Consensus 614 Tgs~DgtIrVWDl~t~~~----~~~~~~-~h~~~V-~slafsp~--g~~lLaSgs~Dg~I~iWDl~ 671 (768)
.+++||+|.-|...-... ....+. ...+.| ..+++... +..|+++--..++|.|||-.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 889999999998532211 122222 112333 44555533 56666666678999999865
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.24 E-value=0.89 Score=50.99 Aligned_cols=146 Identities=10% Similarity=0.114 Sum_probs=77.8
Q ss_pred CeEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEeccCC--CCEEEEEEcCC--CCEE
Q 004207 557 KVESCHFSPDGKLLATGGH--------------------DKKAVLWCTESFTVKSTLEEHT--QWITDVRFSPS--LSRL 612 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~--------------------Dg~I~VWdl~t~~~~~tl~~h~--~~V~sl~fspd--g~~L 612 (768)
--+.+-|.|..+.++|... ..+++|||+.+.+.+.++.... ..+..|+|..+ ..+-
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g 261 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG 261 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence 3466778888888887754 3479999999999999886543 24667888654 4443
Q ss_pred EE-EeCCCcEEEEEC-CCCCeeE---EEeec-----------------CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEEC
Q 004207 613 AT-SSADRTVRVWDT-ENPDYSL---RTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (768)
Q Consensus 613 aT-gs~DgtIrVWDl-~t~~~~~---~~~~~-----------------h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl 670 (768)
++ +.-..+|..|-- +.++... ..+.. -..-|+.|.++.|.++|.+++-..|.|+-||+
T Consensus 262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence 33 333445544433 4333211 11110 12457999999999999999999999999999
Q ss_pred CCC---eeEEEEecCC-----------------CeeEEEEecCCCEEEEEEc
Q 004207 671 NNG---SCAGVFKCQS-----------------GATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 671 ~sg---~~i~~~~~~~-----------------~i~sl~fsp~~~~llags~ 702 (768)
..- +.+..+...+ ...-+..|-+|++|++..+
T Consensus 342 SDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 342 SDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 763 3444433222 2355778888888877653
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.22 E-value=1.7 Score=44.80 Aligned_cols=134 Identities=11% Similarity=0.081 Sum_probs=81.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEE
Q 004207 598 QWITDVRFSPSLSRLATSSAD---------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (768)
Q Consensus 598 ~~V~sl~fspdg~~LaTgs~D---------gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iW 668 (768)
...++-..+|+|++++-.-.| |.++.|-.... +..+...-.--..++|+.+.+.+.++-+.+-+|.-|
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 345667789999985433222 44555544321 111222223346789998888788788888888778
Q ss_pred E--CCCCe-----eEEEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEe
Q 004207 669 S--INNGS-----CAGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTL 736 (768)
Q Consensus 669 D--l~sg~-----~i~~~~~-----~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l 736 (768)
| ..+|. .+..++. +-..-.+++.-+|..++++-..++|..+|..+++....+
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei---------------- 249 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI---------------- 249 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE----------------
Confidence 7 55543 2333322 111234566677777777778888888888887664332
Q ss_pred ccCCCCeeEEEEeC
Q 004207 737 SAHDKLVSSLAAST 750 (768)
Q Consensus 737 ~~H~~~I~sla~sp 750 (768)
.-....|+|+||--
T Consensus 250 klPt~qitsccFgG 263 (310)
T KOG4499|consen 250 KLPTPQITSCCFGG 263 (310)
T ss_pred EcCCCceEEEEecC
Confidence 22356688888863
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.19 E-value=1.3 Score=47.15 Aligned_cols=162 Identities=12% Similarity=0.146 Sum_probs=105.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004207 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (768)
Q Consensus 552 ~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h-~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~ 630 (768)
.+-...|.++.|+|+.+.|++......-.||=..+|..+.++... -.....|.|.-++.+.++--.+..+.++.++...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344555999999999998888888888888877789998887431 1234677888888888888888888888776543
Q ss_pred eeE---------EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee---EEEEec--------CCCeeEEEE
Q 004207 631 YSL---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKC--------QSGATQMRF 690 (768)
Q Consensus 631 ~~~---------~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~---i~~~~~--------~~~i~sl~f 690 (768)
..+ ......+.....++|.|....+++ +-+..=+.||.+..+.. ++.... -..+.++.|
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 211 112222566889999999887764 44455566665543221 110000 134677889
Q ss_pred ecCCCEEEEEEc-CCeEEEEECCCc
Q 004207 691 QPRLGRILAAAI-ENYISILDVETQ 714 (768)
Q Consensus 691 sp~~~~llags~-Dg~I~IwD~~t~ 714 (768)
++..+.+++-+. ++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 887777666664 455555665543
No 401
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.14 E-value=0.6 Score=49.22 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=89.4
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCC-CeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE-E-------CC
Q 004207 562 HFSPDGKLLATGGHD-----KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-D-------TE 627 (768)
Q Consensus 562 ~fSpdg~~LaSgs~D-----g~I~VWdl~t-~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVW-D-------l~ 627 (768)
+||+||.+|+..-.| |.|-|||.+. ...+..+..|.-....+.|.+||+.++.+. |-|... | ++
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence 689999998876443 6799999874 344556677776778899999999988863 434444 2 22
Q ss_pred CCCeeEEEe-------------e--cCCCCeEEEEEeCCCCeEEEEEeCCCc-----EEEEECCCCeeEEEEec------
Q 004207 628 NPDYSLRTF-------------T--GHSTTVMSLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAGVFKC------ 681 (768)
Q Consensus 628 t~~~~~~~~-------------~--~h~~~V~slafsp~g~~lLaSgs~Dg~-----I~iWDl~sg~~i~~~~~------ 681 (768)
+.+..+..+ . -+.-.|..++..++|. +++.|-..|- -.+=-.+.++.+..+..
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~ 276 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA 276 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence 222211111 1 2334577788777765 4444432221 11111122333333322
Q ss_pred --CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCceEe
Q 004207 682 --QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCR 717 (768)
Q Consensus 682 --~~~i~sl~fsp~~~~llags~-Dg~I~IwD~~t~~~~ 717 (768)
...|-+++.+.+.+.++..+- .+...+||..++..+
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 234677888877676666554 455677887776554
No 402
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.13 Score=62.32 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=57.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEE---EcCCCCEEEEEeCCCcEEEEEC
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR---FSPSLSRLATSSADRTVRVWDT 626 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~---fspdg~~LaTgs~DgtIrVWDl 626 (768)
-.++|+|++|+.||..++.|-.+|.|.+||+..+++++.+..|..+++.+- |..++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 357899999999999999999999999999999999988877766655543 4445567888877775 5554
No 403
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.08 E-value=0.0056 Score=71.99 Aligned_cols=128 Identities=12% Similarity=0.143 Sum_probs=74.4
Q ss_pred ecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCeEEEEe-----ccCCCCEEEEEEcC---CCCEEEEEeCCC
Q 004207 551 IPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVKSTL-----EEHTQWITDVRFSP---SLSRLATSSADR 619 (768)
Q Consensus 551 l~~H~~~I~sl~fSp-dg~~LaSgs~Dg~I~VWdl~--t~~~~~tl-----~~h~~~V~sl~fsp---dg~~LaTgs~Dg 619 (768)
+++..+.|-.+.|-. +...++ -.-|.+.|||++ .|++...+ ..-...+.-|.|+| +.-+++.+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 456666777777743 222222 233678899875 34433222 22223455666765 566788888889
Q ss_pred cEEEEECCCCCeeEEEeecCCCCeEEEEE-----------eCCCCeEEEEEeCCCcEEEEEC-----CCCeeEEEEecCC
Q 004207 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDF-----------HPSKEDLLCSCDNNSEIRYWSI-----NNGSCAGVFKCQS 683 (768)
Q Consensus 620 tIrVWDl~t~~~~~~~~~~h~~~V~slaf-----------sp~g~~lLaSgs~Dg~I~iWDl-----~sg~~i~~~~~~~ 683 (768)
+|++..+++... ..+.+|...++.++| +|||. +|+....||.+++|-+ +.-.|.+.++.+.
T Consensus 206 ~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 206 EIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred ceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 999988875432 444557766666554 56765 5556666777776654 2334555555444
No 404
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=0.21 Score=60.83 Aligned_cols=146 Identities=12% Similarity=0.004 Sum_probs=91.6
Q ss_pred CEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCCeeE----E------EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 004207 599 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----R------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (768)
Q Consensus 599 ~V~sl~fspdg~~LaTg--s~DgtIrVWDl~t~~~~~----~------~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~ 666 (768)
+|..+...+|+...++. +.+-.|.+||+++-.... . +.......+.++.|+|.-...++++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555556676654443 334489999997532111 1 11112345678889997666677888899999
Q ss_pred EEECCCC-eeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeE
Q 004207 667 YWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSS 745 (768)
Q Consensus 667 iWDl~sg-~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~s 745 (768)
+..+..- ..+..+......++++|+|.|..+++|-..|++.-|...-.... .+. .... .....|.+
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~-~ip--------~Pp~----~e~yrvl~ 248 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS-EIP--------EPPV----EENYRVLS 248 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceee-ccc--------CCCc----CCCcceeE
Confidence 9877542 22334455677899999999999999999999988876443111 100 0000 01356888
Q ss_pred EEEeCCCCEEEE
Q 004207 746 LAASTVNGMVAS 757 (768)
Q Consensus 746 la~spdg~~LaS 757 (768)
|+|-....+|++
T Consensus 249 v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 249 VTWLSTQEFLVV 260 (1405)
T ss_pred EEEecceeEEEE
Confidence 888766555554
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.97 E-value=1.6 Score=46.10 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=87.0
Q ss_pred CEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEE-ECCCCe
Q 004207 599 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW-SINNGS 674 (768)
Q Consensus 599 ~V~sl~fspdg~~LaTgs---~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iW-Dl~sg~ 674 (768)
.+.+.++++++..++... ....|+++...... ...+.+ ..++...|++++. +.+....+...+++ +..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g--~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTG--GSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccC--CccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence 688999999998777665 23355565544322 222232 3788889999955 55555556666666 333333
Q ss_pred eEE-EEec--C-CCeeEEEEecCCCEEEEEEc---CCeEEEEECCCceEeeecceeEEeecCCCceEEe-ccCCCCeeEE
Q 004207 675 CAG-VFKC--Q-SGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQTLELWNMTENKTLTL-SAHDKLVSSL 746 (768)
Q Consensus 675 ~i~-~~~~--~-~~i~sl~fsp~~~~llags~---Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l-~~H~~~I~sl 746 (768)
... .+.. . ..|..+.++|+|..++.... ++.|.+--+......... .......+ ......++++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~--------~l~~~~~~~~~~~~~v~~v 171 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR--------RLTGPRRVAPPLLSDVTDV 171 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc--------eeccceEecccccCcceee
Confidence 221 1221 1 27999999999999887763 455655433221110000 00001111 1334578999
Q ss_pred EEeCCCCEEEEEECCC
Q 004207 747 AASTVNGMVASASHDK 762 (768)
Q Consensus 747 a~spdg~~LaSgs~DG 762 (768)
+|.+++.+++.+...+
T Consensus 172 ~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 172 AWSDDSTLVVLGRSAG 187 (253)
T ss_pred eecCCCEEEEEeCCCC
Confidence 9999988777665543
No 406
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=2.1 Score=47.87 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=84.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~----~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~ 629 (768)
..++|.+|.||+|.+.||+--.|++|-+++....+.. .+.+..+..|...+|+.+ .-+|..+..| |.+|.+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 3468999999999999999999999999987432222 222334456889999876 4566655554 788887766
Q ss_pred CeeEEEeecCCCCeEEEEEeCCCCeEEEEEe-CCCcEEEEECCCCee
Q 004207 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSC 675 (768)
Q Consensus 630 ~~~~~~~~~h~~~V~slafsp~g~~lLaSgs-~Dg~I~iWDl~sg~~ 675 (768)
+..++..+.|+..|.-..|.++...++.+.+ ..+++.=+-++.+..
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 6667888889999999999998775554444 344444455555443
No 407
>PHA02713 hypothetical protein; Provisional
Probab=94.89 E-value=0.56 Score=55.37 Aligned_cols=143 Identities=14% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCCC-------------------
Q 004207 566 DGKLLATGGHDK-----KAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADR------------------- 619 (768)
Q Consensus 566 dg~~LaSgs~Dg-----~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~Dg------------------- 619 (768)
+|++.+.||.++ +|.+||..+.+=. ..+.........+.+ ++.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 778888888764 4778987764322 122111111122222 567777777652
Q ss_pred ----cEEEEECCCCCeeE-EEeecCCCCeEEEEEeCCCCeEEEEEeCC------CcEEEEECCC-Cee--EEEEecCCCe
Q 004207 620 ----TVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINN-GSC--AGVFKCQSGA 685 (768)
Q Consensus 620 ----tIrVWDl~t~~~~~-~~~~~h~~~V~slafsp~g~~lLaSgs~D------g~I~iWDl~s-g~~--i~~~~~~~~i 685 (768)
+|..||.++..... ......... .+++.. + +.+++.|+.+ ..|..||.++ .+- +..+......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~-~-~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSH-K-DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCccccc-CcEEEE-C-CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 47778887654321 111111111 122222 2 4567677654 2467899886 333 2333222222
Q ss_pred eEEEEecCCCEEEEEEcCC--eEEEEECCCc
Q 004207 686 TQMRFQPRLGRILAAAIEN--YISILDVETQ 714 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg--~I~IwD~~t~ 714 (768)
..++.. ++..+++|+.++ .+..||..+.
T Consensus 506 ~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 506 LHTILH-DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ceeEEE-CCEEEEEeeecceeehhhcCcccc
Confidence 223322 345566777776 4555555554
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.85 E-value=3.5 Score=43.57 Aligned_cols=155 Identities=16% Similarity=0.126 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 004207 558 VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg--~I~VWdl~t~~~~~tl~~h~-~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~ 634 (768)
.-.+.|..+|.++-+.+.-| .|+.+|+.+++......-.. ..-..|+...| ++..-.-.++...+||.++.+. +.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~-~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKK-IG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEE-EE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceE-EE
Confidence 34677867888888887766 68999999998876553322 22334444433 3444445688999999998654 45
Q ss_pred EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecC------CCeeEEEEecCCCEEEEEE-cCCeEE
Q 004207 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQPRLGRILAAA-IENYIS 707 (768)
Q Consensus 635 ~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~------~~i~sl~fsp~~~~llags-~Dg~I~ 707 (768)
.+. ..+.-+.++ .++..++.| +....|+++|..+.+.++.+... ..+.-+.|. ++.|++-- ....|.
T Consensus 125 ~~~-y~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 125 TFP-YPGEGWGLT--SDGKRLIMS-DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEE
T ss_pred EEe-cCCcceEEE--cCCCEEEEE-CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEE
Confidence 544 345667777 445656644 44668999999888877766641 235567776 34555554 567888
Q ss_pred EEECCCceEeeec
Q 004207 708 ILDVETQVCRLKL 720 (768)
Q Consensus 708 IwD~~t~~~~~~~ 720 (768)
..|..++.+...+
T Consensus 199 ~Idp~tG~V~~~i 211 (264)
T PF05096_consen 199 RIDPETGKVVGWI 211 (264)
T ss_dssp EEETTT-BEEEEE
T ss_pred EEeCCCCeEEEEE
Confidence 9999998776543
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.83 E-value=1.2 Score=49.71 Aligned_cols=142 Identities=11% Similarity=0.119 Sum_probs=78.4
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Ce--EEEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004207 556 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs-----------~Dg-~I~VWdl~t--~~--~~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg 619 (768)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........++|.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3467899999999877653 223 777776432 22 223333333456889999888 44444444
Q ss_pred cEEEEECCCC-----C--eeEEEeec----CCCCeEEEEEeCCCCeEEEEEeC------------------CCcEEEEEC
Q 004207 620 TVRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI 670 (768)
Q Consensus 620 tIrVWDl~t~-----~--~~~~~~~~----h~~~V~slafsp~g~~lLaSgs~------------------Dg~I~iWDl 670 (768)
.+++.|.+.. + ..+..+.. +...+..++|.|+|..+++.++. .|.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3344455321 1 11122222 12447789999998755544421 134555565
Q ss_pred CCCeeEEEEecCCCeeEEEEecCCCEEEE
Q 004207 671 NNGSCAGVFKCQSGATQMRFQPRLGRILA 699 (768)
Q Consensus 671 ~sg~~i~~~~~~~~i~sl~fsp~~~~lla 699 (768)
..++....-........++|++++..+++
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 54443222222344568999998766554
No 410
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.66 E-value=9.7 Score=42.92 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=79.6
Q ss_pred EEEEcCCCCEEEEEeCCC-----------cEEEEECCCCeE--EEEeccCCCC--EEEEEEcCCCCEEEEEeCC----Cc
Q 004207 560 SCHFSPDGKLLATGGHDK-----------KAVLWCTESFTV--KSTLEEHTQW--ITDVRFSPSLSRLATSSAD----RT 620 (768)
Q Consensus 560 sl~fSpdg~~LaSgs~Dg-----------~I~VWdl~t~~~--~~tl~~h~~~--V~sl~fspdg~~LaTgs~D----gt 620 (768)
.+.|.+|++.|+....+. .|++|.+.+... ...+.+.... ...+..++|+++|+..+.. ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 399999988766554333 377888766432 2344333322 6788899999987765433 34
Q ss_pred EEEEECCCC---CeeEEEeecCCCCeE-EEEEeCCCCeEEEEEe---CCCcEEEEECCCCee---E-EEEecCCCeeEEE
Q 004207 621 VRVWDTENP---DYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCD---NNSEIRYWSINNGSC---A-GVFKCQSGATQMR 689 (768)
Q Consensus 621 IrVWDl~t~---~~~~~~~~~h~~~V~-slafsp~g~~lLaSgs---~Dg~I~iWDl~sg~~---i-~~~~~~~~i~sl~ 689 (768)
|++.|+..+ ......+......+. .+... . ..+++... .++.|...++..... . ..+.....+.-..
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~ 331 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLED 331 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEE
T ss_pred EEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEE
Confidence 788888764 223444444444443 34444 3 44444432 245677778876542 2 2233333333333
Q ss_pred EecCCCEEEEEEcC-C--eEEEEECC
Q 004207 690 FQPRLGRILAAAIE-N--YISILDVE 712 (768)
Q Consensus 690 fsp~~~~llags~D-g--~I~IwD~~ 712 (768)
+...+.+|+....+ + .|+++|+.
T Consensus 332 ~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 332 VSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEECCEEEEEEEECCccEEEEEECC
Confidence 34444566555543 3 36777777
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.65 E-value=15 Score=45.04 Aligned_cols=207 Identities=11% Similarity=0.118 Sum_probs=115.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEE-EEEcCC--CCEEEEEeCCCcEEEEECCCC-C
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPS--LSRLATSSADRTVRVWDTENP-D 630 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~s-l~fspd--g~~LaTgs~DgtIrVWDl~t~-~ 630 (768)
+.++.--.|+..++.-+-|..|+-..+|.-. ++.+.+--.-+ .+.. +.|+.+ ...|+++ ..+.+++..++.- +
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~k-ev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqk 705 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLK-EVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQK 705 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchH-HhhhhcccccccCCceEEEe-cCCceEEEEecchhh
Confidence 4455556666655443334445666666533 34333221111 1222 223332 2345554 4556777777642 2
Q ss_pred eeEEEeecCCCCeEEEEEeCCCCeEEEEEeC-----------C---CcEEEEECCCCeeEEEEecC--C---CeeEEEEe
Q 004207 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------N---SEIRYWSINNGSCAGVFKCQ--S---GATQMRFQ 691 (768)
Q Consensus 631 ~~~~~~~~h~~~V~slafsp~g~~lLaSgs~-----------D---g~I~iWDl~sg~~i~~~~~~--~---~i~sl~fs 691 (768)
..+++.. -......+++.+... ++.+.+. . ..++++|-.+.+.+...+.. . .+.++.|.
T Consensus 706 l~irtvp-l~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~ 783 (1096)
T KOG1897|consen 706 LHIRTVP-LGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFT 783 (1096)
T ss_pred cceeeec-CCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeec
Confidence 2244433 334567778877433 3333321 1 23677777776666554432 2 24455587
Q ss_pred cC-CCEEEEEEc----------CCeEEEEECCCce---Eeeecc---------------------eeEEeecCCCceE-E
Q 004207 692 PR-LGRILAAAI----------ENYISILDVETQV---CRLKLQ---------------------TLELWNMTENKTL-T 735 (768)
Q Consensus 692 p~-~~~llags~----------Dg~I~IwD~~t~~---~~~~~~---------------------~I~iwd~~~~~~~-~ 735 (768)
.+ +.++++|+. .|.|.+|.+.... .++... .+++|++.+++.+ .
T Consensus 784 ~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~ 863 (1096)
T KOG1897|consen 784 DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRI 863 (1096)
T ss_pred CCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEccccceehh
Confidence 76 566666653 4778888876621 111111 8889998888555 3
Q ss_pred eccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 736 LSAHDKLVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 736 l~~H~~~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
-..|...+..+...-.++.+++|..=++|.+
T Consensus 864 e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 864 ECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred hhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 4477888999999988999999987666554
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.49 E-value=7.4 Score=41.06 Aligned_cols=145 Identities=12% Similarity=0.058 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCCee
Q 004207 557 KVESCHFSPDGKLLATGG---HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENPDYS 632 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs---~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWD-l~t~~~~ 632 (768)
.+.+.++++|+..+|... ....++++.. +.....+. ....+..-.|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999776655 2234555543 33332221 223688889999987777766667777774 3333322
Q ss_pred EEEeecC--CCCeEEEEEeCCCCeEEEEEe--CCCcEEEEECC---CC---e---eEEEEe-cCCCeeEEEEecCCCEEE
Q 004207 633 LRTFTGH--STTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN---NG---S---CAGVFK-CQSGATQMRFQPRLGRIL 698 (768)
Q Consensus 633 ~~~~~~h--~~~V~slafsp~g~~lLaSgs--~Dg~I~iWDl~---sg---~---~i~~~~-~~~~i~sl~fsp~~~~ll 698 (768)
....... ...|.++.++|||.++.+... .++.|.+--+. .+ . .+.... ....+..+.|.+++..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222211 128999999999998877663 34666665442 22 1 111111 135688999999977666
Q ss_pred EEEcCC
Q 004207 699 AAAIEN 704 (768)
Q Consensus 699 ags~Dg 704 (768)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 655433
No 413
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.36 E-value=0.1 Score=40.16 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~ 588 (768)
...|.+++|+|...+||.+..||.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 356999999999999999999999999998 443
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.28 E-value=4.7 Score=43.73 Aligned_cols=161 Identities=12% Similarity=0.177 Sum_probs=83.3
Q ss_pred CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 004207 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (768)
Q Consensus 542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtI 621 (768)
+.+++.+. ..-.+.|..+..++||++++++..-..+.-||--...-...-..-...|.++.|.|++.+.+++ ..|.|
T Consensus 133 G~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~ 209 (302)
T PF14870_consen 133 GKTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQI 209 (302)
T ss_dssp TSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEE
T ss_pred CCCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEE
Confidence 44555443 3445779999999999999888665555677743211111122245789999999998776654 88888
Q ss_pred EEEECC-CCCeeEE---EeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec----CCCeeEEEEecC
Q 004207 622 RVWDTE-NPDYSLR---TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRFQPR 693 (768)
Q Consensus 622 rVWDl~-t~~~~~~---~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~----~~~i~sl~fsp~ 693 (768)
+.=+.. ..+.-.. ......-.+..++|.+++. ++++|+ .|.+ +.....|+.-..... ...+..+.|...
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 887722 1111001 1111223478999998855 665665 4543 455555654444332 455788888765
Q ss_pred CCEEEEEEcCCeEEEE
Q 004207 694 LGRILAAAIENYISIL 709 (768)
Q Consensus 694 ~~~llags~Dg~I~Iw 709 (768)
..-++.+.+|.|.-|
T Consensus 287 -~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 287 -DKGFVLGQDGVLLRY 301 (302)
T ss_dssp -TEEEEE-STTEEEEE
T ss_pred -CceEEECCCcEEEEe
Confidence 567777888887655
No 415
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.07 E-value=1.6 Score=51.64 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=59.6
Q ss_pred CCCEEEEEeCCCc-----EEEEECCCCeE--EEEeccCCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCCee
Q 004207 566 DGKLLATGGHDKK-----AVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADR------TVRVWDTENPDYS 632 (768)
Q Consensus 566 dg~~LaSgs~Dg~-----I~VWdl~t~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs~Dg------tIrVWDl~t~~~~ 632 (768)
+|.+.|+||.||. |-.||..+.+- +..+......+-.+.+ ++.+.++|+.|+ +|..||..+....
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 7888999999874 66677665332 2212111112222222 477778887654 5788888876542
Q ss_pred EE-EeecCCCCeEEEEEeCCCCeEEEEEeCCCc-----EEEEECCCCeeEEE
Q 004207 633 LR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAGV 678 (768)
Q Consensus 633 ~~-~~~~h~~~V~slafsp~g~~lLaSgs~Dg~-----I~iWDl~sg~~i~~ 678 (768)
.. ....-... ..++.. +..+++.|+.|+. |..||.++.+....
T Consensus 458 ~~~~M~~~R~~-~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 458 LIAPMNTRRSG-FGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred ecCCccccccc-ceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 21 11111111 123332 2568888887763 77788877654443
No 416
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.94 E-value=14 Score=41.94 Aligned_cols=177 Identities=13% Similarity=0.192 Sum_probs=98.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------------------
Q 004207 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------------------- 628 (768)
Q Consensus 568 ~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t------------------- 628 (768)
.+|++=+.||.+.+|+-+..-....+.. .--.-.+.|.+....|++++.+..|.-|....
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence 4677789999999999776554444443 22234577888888999999998898887531
Q ss_pred -CCeeEE--EeecCCCCeEEEEE---eCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEE-Eec----CC---
Q 004207 629 -PDYSLR--TFTGHSTTVMSLDF---HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR-FQP----RL--- 694 (768)
Q Consensus 629 -~~~~~~--~~~~h~~~V~slaf---sp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~-fsp----~~--- 694 (768)
++.... ++. -...+..|.. +.....+++-| ...+.+.+- +|......+......+++ |.. .+
T Consensus 225 ~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~ 300 (418)
T PF14727_consen 225 SGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG--ERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTR 300 (418)
T ss_pred ccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe--cceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCc
Confidence 010000 111 1223444433 22334455555 456777765 466555555544433332 211 21
Q ss_pred CEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCC-CeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 695 GRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 695 ~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~-~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
..+++++.++.+.||.-.+. +|.... .|.- .|.-..|..-...|++-+.||.+.+
T Consensus 301 ~~llV~t~t~~LlVy~d~~L----------~WsA~l-------~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 301 LNLLVGTHTGTLLVYEDTTL----------VWSAQL-------PHVPVALSVANFNGLKGLIVSLSDEGQLSV 356 (418)
T ss_pred eEEEEEecCCeEEEEeCCeE----------EEecCC-------CCCCEEEEecccCCCCceEEEEcCCCcEEE
Confidence 13888899999999865432 343221 1111 0111222333467888888888765
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.91 E-value=0.07 Score=63.20 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=72.6
Q ss_pred CeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEE-----------EcCCCCEEEEEeCCCcEE
Q 004207 557 KVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTVR 622 (768)
Q Consensus 557 ~I~sl~fSp---dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~-----------fspdg~~LaTgs~DgtIr 622 (768)
.+.-|.|+| +.-++..+-.++.|++.++.+... ..+.+|..++++++ .+|||+.|++++.||.++
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 334445544 666777888888888877654332 34455776665554 489999999999999999
Q ss_pred EEECCC-CC---eeEEEeecCC-CCeEEEEEeCCC---------CeEEEEEeCCCcEEEEECCCCeeE
Q 004207 623 VWDTEN-PD---YSLRTFTGHS-TTVMSLDFHPSK---------EDLLCSCDNNSEIRYWSINNGSCA 676 (768)
Q Consensus 623 VWDl~t-~~---~~~~~~~~h~-~~V~slafsp~g---------~~lLaSgs~Dg~I~iWDl~sg~~i 676 (768)
.|.+.- +. .++..++.|. .+-.|.-|+... ..+|-+.+.+..+++|.....+|.
T Consensus 261 f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 887642 11 1245556665 333333333221 123334445667888877666665
No 418
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.82 E-value=3.5 Score=50.16 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=95.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--eeE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSL 633 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~--~~~ 633 (768)
+.|.++..- +|++||.- ...|++|++.+.+.++.-..|..++..+...-.+..+++|.--+.|.+.-.+..+ ...
T Consensus 830 Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 830 GAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred cceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence 445554332 67777654 4589999999887777777788889999998889999999888877666554433 433
Q ss_pred EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------------------CeeEEEEecCCCeeE--EEEec
Q 004207 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------------------GSCAGVFKCQSGATQ--MRFQP 692 (768)
Q Consensus 634 ~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------------------g~~i~~~~~~~~i~s--l~fsp 692 (768)
..-..+....+++.+-.+.. ++.+..+|.+++....+ |+.+..+.+..-|.+ -...|
T Consensus 907 vArD~~p~Wmtaveil~~d~--ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~ 984 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDT--YLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIP 984 (1096)
T ss_pred eehhhCccceeeEEEecCce--EEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccC
Confidence 33444667788888775533 33556677776654432 122333332222333 13345
Q ss_pred CCCEEEEEEcCCeEEEE
Q 004207 693 RLGRILAAAIENYISIL 709 (768)
Q Consensus 693 ~~~~llags~Dg~I~Iw 709 (768)
-+..++.|+.+|.|-+.
T Consensus 985 ~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 985 LEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred CCCcEEEEEccceEEEE
Confidence 56678999999987654
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.80 E-value=1.8 Score=51.15 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=71.7
Q ss_pred CeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEE--ecCCCEEEEEEcCCeEEEEECCCceE-
Q 004207 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRF--QPRLGRILAAAIENYISILDVETQVC- 716 (768)
Q Consensus 642 ~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~f--sp~~~~llags~Dg~I~IwD~~t~~~- 716 (768)
.++-+.-+.-++ +.++-+....+.|||.+.+........ .+.|..+.| .|++..+++.+..+.|.+|.-.....
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 444444444444 333444566899999998876654443 788999988 57888999999999999986422110
Q ss_pred --eeecceeEEeecCCCceEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 717 --RLKLQTLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 717 --~~~~~~I~iwd~~~~~~~~l~~H~-~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
......++..| +..|. .+|.+..|.++|.+++.+| ..+.|+|
T Consensus 110 ~~~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 110 NKGPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred cCCcccceeEEEE--------eecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 00111122222 22333 4689999999887665443 3555554
No 420
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.76 E-value=13 Score=40.89 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=21.7
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 004207 738 AHDKLVSSLAASTVNGMVASASHDKCVK 765 (768)
Q Consensus 738 ~H~~~I~sla~spdg~~LaSgs~DG~V~ 765 (768)
.....+..|++.|||.++++.+.+|.|.
T Consensus 303 ~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 303 GFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4445799999999999988888888874
No 421
>PHA03098 kelch-like protein; Provisional
Probab=93.50 E-value=1.8 Score=50.66 Aligned_cols=106 Identities=11% Similarity=0.062 Sum_probs=53.3
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCeEEEE--eccCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCee
Q 004207 566 DGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS 632 (768)
Q Consensus 566 dg~~LaSgs~Dg------~I~VWdl~t~~~~~t--l~~h~~~V~sl~fspdg~~LaTgs~D-----gtIrVWDl~t~~~~ 632 (768)
++.+++.||.++ .+..||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 566677776543 577888776544321 1111111222222 46677777765 35778888765532
Q ss_pred EEEeecCCCCeEEEEEeCCCCeEEEEEeCC------CcEEEEECCCCee
Q 004207 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSC 675 (768)
Q Consensus 633 ~~~~~~h~~~V~slafsp~g~~lLaSgs~D------g~I~iWDl~sg~~ 675 (768)
...-..+...-.+++.. ++.+++.|+.+ ..+..||..+.+-
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 11100111111122222 24566677632 3578899876543
No 422
>PRK10350 hypothetical protein; Provisional
Probab=93.46 E-value=0.25 Score=45.24 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=13.3
Q ss_pred ccccchhhhhh-hHHHHHHHHHHHHHH
Q 004207 68 NEKHSESAASY-IESQVIKAREQQQQQ 93 (768)
Q Consensus 68 ~~~~s~~a~qy-iq~qq~q~~qqQqQQ 93 (768)
+...++....| +.+++..+.+.+.+|
T Consensus 21 N~~NNPnqpGY~ipSQQRmQtqMQ~QQ 47 (145)
T PRK10350 21 NTLNNPNQPGYQIPSQQRMQTQMQTQQ 47 (145)
T ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHH
Confidence 44445556667 555555444444443
No 423
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.42 E-value=17 Score=41.27 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=87.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCe-----EEEEeccCCCCEEEEEEc---C--CCCEEEEEeCCCcEEEEECCCC--C----
Q 004207 567 GKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFS---P--SLSRLATSSADRTVRVWDTENP--D---- 630 (768)
Q Consensus 567 g~~LaSgs~Dg~I~VWdl~t~~-----~~~tl~~h~~~V~sl~fs---p--dg~~LaTgs~DgtIrVWDl~t~--~---- 630 (768)
...|++|+..|.++||+..... ++.+. .-..+|..|..- + +...||+ -.-..+.||.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4589999999999999875432 22222 234677777653 2 2234444 56677888887321 1
Q ss_pred --eeEEEeecCC--CCeEEEEEeC----CCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCCEEEEEEc
Q 004207 631 --YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (768)
Q Consensus 631 --~~~~~~~~h~--~~V~slafsp----~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~~llags~ 702 (768)
..+.....|. .....+++-| .++.++|+=+.||.+.+|+-+.....+.+..---...++|.+....+++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 2233333343 2233344333 3367899999999999999875544444433222345678888888888888
Q ss_pred CCeEEEEEC
Q 004207 703 ENYISILDV 711 (768)
Q Consensus 703 Dg~I~IwD~ 711 (768)
+..|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 877777765
No 424
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.34 E-value=14 Score=40.08 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=75.6
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC-C
Q 004207 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-N 672 (768)
Q Consensus 594 ~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~-s 672 (768)
..-.+.+..+..+++++++++++......-||.-....... .......|.+|.|.|++...+ . ...|.|++=+.. .
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-~r~~~~riq~~gf~~~~~lw~-~-~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-NRNSSRRIQSMGFSPDGNLWM-L-ARGGQIQFSDDPDD 217 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-E--SSS-EEEEEE-TTS-EEE-E-ETTTEEEEEE-TTE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-ccCccceehhceecCCCCEEE-E-eCCcEEEEccCCCC
Confidence 34456789999999999999987777777888654333222 222457899999999976444 3 367888887722 1
Q ss_pred CeeEEE----E-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEE
Q 004207 673 GSCAGV----F-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLA 747 (768)
Q Consensus 673 g~~i~~----~-~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla 747 (768)
.+.-.. + .....+..++|.+++. +.+++..|.+. .....++.=.+.. ....-...++.|.
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~G~l~-~S~DgGktW~~~~-------------~~~~~~~n~~~i~ 282 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGSGTLL-VSTDGGKTWQKDR-------------VGENVPSNLYRIV 282 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS--EEEEESTT-EE-EESSTTSS-EE-G-------------GGTTSSS---EEE
T ss_pred ccccccccCCcccCceeeEEEEecCCCC-EEEEeCCccEE-EeCCCCccceECc-------------cccCCCCceEEEE
Confidence 211111 1 1123478899998754 55566666443 2222222111100 0012234467788
Q ss_pred EeCCCCEEEEEECCCcEEEe
Q 004207 748 ASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 748 ~spdg~~LaSgs~DG~V~IW 767 (768)
|.... .-++.+.||.|.-|
T Consensus 283 f~~~~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 283 FVNPD-KGFVLGQDGVLLRY 301 (302)
T ss_dssp EEETT-EEEEE-STTEEEEE
T ss_pred EcCCC-ceEEECCCcEEEEe
Confidence 76544 34455678887665
No 425
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.29 E-value=22 Score=43.59 Aligned_cols=155 Identities=9% Similarity=0.073 Sum_probs=92.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEE-------------EEEEcC--CCCEEEEEeC----------CCc
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-------------DVRFSP--SLSRLATSSA----------DRT 620 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~-------------sl~fsp--dg~~LaTgs~----------Dgt 620 (768)
++..|+.++.|+.|.-.|.++++.+..+.. .+.|. .+.-.| .+..+++|+. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 455788888999999999999999877632 22221 111122 1345666643 688
Q ss_pred EEEEECCCCCeeEEEeecC----------------CCCe-EEEEEeCCCCeEEEEE-----------------eCCCcEE
Q 004207 621 VRVWDTENPDYSLRTFTGH----------------STTV-MSLDFHPSKEDLLCSC-----------------DNNSEIR 666 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~~h----------------~~~V-~slafsp~g~~lLaSg-----------------s~Dg~I~ 666 (768)
|+-+|+++++..=....+. ...+ ..+++++....+++-. ...+.|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 9999999988532222110 0111 2334455433332211 1134677
Q ss_pred EEECCCCeeEEEEec-CCCe---------eEEEEec-CCC---EEEEEEcCCeEEEEECCCceEeeecc
Q 004207 667 YWSINNGSCAGVFKC-QSGA---------TQMRFQP-RLG---RILAAAIENYISILDVETQVCRLKLQ 721 (768)
Q Consensus 667 iWDl~sg~~i~~~~~-~~~i---------~sl~fsp-~~~---~llags~Dg~I~IwD~~t~~~~~~~~ 721 (768)
-.|+++|+....+.. ++.+ .-+.+.. ++. .++.++.+|.++++|.++++.+...+
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 788899998877764 2221 1122332 442 68888899999999999998776543
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=1.3 Score=44.73 Aligned_cols=103 Identities=10% Similarity=0.011 Sum_probs=55.0
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe
Q 004207 608 SLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 685 (768)
Q Consensus 608 dg~~LaTgs~D--gtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i 685 (768)
++.++.+.+.- ..|++||+++++.....-.. ...+..=-...-++.+..-.-.+|...+||.++.+++..+...+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 34566665543 37999999987753322221 1111111111123334444455778888888888887777765555
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 686 TQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 686 ~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
..++... ..++.+....++..-|.++
T Consensus 134 WgLt~d~--~~LimsdGsatL~frdP~t 159 (262)
T COG3823 134 WGLTSDD--KNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred eeeecCC--cceEeeCCceEEEecCHHH
Confidence 5554433 2355544444555545443
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.20 E-value=3.1 Score=46.42 Aligned_cols=161 Identities=8% Similarity=-0.024 Sum_probs=80.3
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCCC--Ce-eEEEeecCCCCeEEEEEeCCCCeEEEEEeCC
Q 004207 598 QWITDVRFSPSLSRLATSS-----------ADR-TVRVWDTENP--DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (768)
Q Consensus 598 ~~V~sl~fspdg~~LaTgs-----------~Dg-tIrVWDl~t~--~~-~~~~~~~h~~~V~slafsp~g~~lLaSgs~D 662 (768)
.....|+|.++|+++++-. ..+ .|.+++-.++ .. ....+.........|+|.+++ +++++ ..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-PP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-CC
Confidence 3457889999988776643 223 6777765432 21 123444334556889999886 55443 33
Q ss_pred CcEEEEECCC-C----eeEE---EEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC--ceEeeecceeEEee
Q 004207 663 SEIRYWSINN-G----SCAG---VFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVET--QVCRLKLQTLELWN 727 (768)
Q Consensus 663 g~I~iWDl~s-g----~~i~---~~~~-----~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t--~~~~~~~~~I~iwd 727 (768)
..+++.|... + +... .+.. +.....++|.|++..+++.+..+.-.+-.... .........+..++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333435432 1 2111 1221 23366899999976655544321111000000 00000111234445
Q ss_pred cCCCceEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 004207 728 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 761 (768)
Q Consensus 728 ~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~D 761 (768)
...++...+...-.....++|++++.++++-..+
T Consensus 171 pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 4444433333222345789999999887764433
No 428
>PHA03098 kelch-like protein; Provisional
Probab=92.95 E-value=3.6 Score=48.18 Aligned_cols=106 Identities=8% Similarity=0.023 Sum_probs=52.4
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEE--EeccCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCCee
Q 004207 566 DGKLLATGGHD-----KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 632 (768)
Q Consensus 566 dg~~LaSgs~D-----g~I~VWdl~t~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~D------gtIrVWDl~t~~~~ 632 (768)
++++++.||.+ ..+.+||..+.+-.. .+....... +++. -++.+++.|+.+ ..+.+||+.+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 67777888765 246778876643221 111111111 1222 245666777632 35888998875432
Q ss_pred EEE-eecCCCCeEEEEEeCCCCeEEEEEeCC--------CcEEEEECCCCeeE
Q 004207 633 LRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCA 676 (768)
Q Consensus 633 ~~~-~~~h~~~V~slafsp~g~~lLaSgs~D--------g~I~iWDl~sg~~i 676 (768)
... ...... -.+++.. + +.+++.|+.+ ..+.+||..+.+..
T Consensus 420 ~~~~~p~~r~-~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 420 KGSPLPISHY-GGCAIYH-D-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred ecCCCCcccc-CceEEEE-C-CEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 111 110111 1122222 2 4566666543 23888898876543
No 429
>PHA02790 Kelch-like protein; Provisional
Probab=92.88 E-value=3.2 Score=48.06 Aligned_cols=105 Identities=9% Similarity=0.063 Sum_probs=52.0
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeEEE--EeccCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCCeeE-EE
Q 004207 566 DGKLLATGGHDK-----KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSL-RT 635 (768)
Q Consensus 566 dg~~LaSgs~Dg-----~I~VWdl~t~~~~~--tl~~h~~~V~sl~fspdg~~LaTgs~D--gtIrVWDl~t~~~~~-~~ 635 (768)
++.++++||.++ .+..||..+.+-.. .+.........+. -++.+.+.|+.+ .++..||..++.... ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667776543 46678877654322 1111111122222 356677777754 357888876554311 11
Q ss_pred eecCCCCeEEEEEeCCCCeEEEEEeCCC---cEEEEECCCCee
Q 004207 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSC 675 (768)
Q Consensus 636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg---~I~iWDl~sg~~ 675 (768)
+.........+.+ ++.+++.|+.++ .+..||.++..-
T Consensus 349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 1111111122222 245777777543 467788876543
No 430
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.82 E-value=7 Score=40.01 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=81.9
Q ss_pred CEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCC--C---cEEEE-ECCC----CeeEE--
Q 004207 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW-SINN----GSCAG-- 677 (768)
Q Consensus 610 ~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~D--g---~I~iW-Dl~s----g~~i~-- 677 (768)
..|+.+...+.|.+|++.........-..--+.|..+.++..|++++..=... . .+|+| +.+. ...++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 45555567788999999854443333333447899999999988666432221 1 45654 2221 11111
Q ss_pred ---------------------EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEe
Q 004207 678 ---------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTL 736 (768)
Q Consensus 678 ---------------------~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l 736 (768)
.+.....+.+++.-|..+.|++|+. +++.+|.+...... ...+.+.|+.... +
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~--~~~~~~lDFe~~l---~ 182 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQ--SEKFSFLDFERSL---I 182 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEe--cccccEEechhhh---h
Confidence 1112334667777777777777654 67888877654331 1123333433111 1
Q ss_pred ccCCC-CeeEEEEeCCCCEEEEEECCCcEEE
Q 004207 737 SAHDK-LVSSLAASTVNGMVASASHDKCVKI 766 (768)
Q Consensus 737 ~~H~~-~I~sla~spdg~~LaSgs~DG~V~I 766 (768)
.-|.+ .+..+++. ++|||..+.. .++|
T Consensus 183 ~~~~~~~p~~v~ic--~~yiA~~s~~-ev~V 210 (215)
T PF14761_consen 183 DHIDNFKPTQVAIC--EGYIAVMSDL-EVLV 210 (215)
T ss_pred heecCceEEEEEEE--eeEEEEecCC-EEEE
Confidence 12222 25667777 7788887765 4444
No 431
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.63 E-value=3 Score=39.42 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=75.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCC-------eeEEEeecCCCCeEEEEEeC----CCCeEEEEEeCCCcEEEEE
Q 004207 601 TDVRFSPSLSRLATSSADRTVRVWDTENPD-------YSLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWS 669 (768)
Q Consensus 601 ~sl~fspdg~~LaTgs~DgtIrVWDl~t~~-------~~~~~~~~h~~~V~slafsp----~g~~lLaSgs~Dg~I~iWD 669 (768)
..-+|......|++++.-|.|.|++..... ..+..+. -...|++|+--+ ++..+|+.|+ ...|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344666666678888889999999876432 1233343 345788886544 3455776777 55899999
Q ss_pred CCCCeeEEEEecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCce
Q 004207 670 INNGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQV 715 (768)
Q Consensus 670 l~sg~~i~~~~~~~~i~sl~fsp~---~~~llags~Dg~I~IwD~~t~~ 715 (768)
+....-+..-....++.++.+-.- ..-++..+.+..|.-||.+..+
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 988776665556688888877322 2346666666778888876644
No 432
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.51 E-value=17 Score=38.88 Aligned_cols=185 Identities=10% Similarity=0.056 Sum_probs=102.7
Q ss_pred CCCEEEeecCCCcEEEeecCCCCCCCCccccccccCCCceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004207 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (768)
Q Consensus 505 ~~~~latGS~D~~v~~w~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl 584 (768)
.+.++....++.-+++++..+...++ ++..+.- .+.-.++.. .|++..++..|.-+.+.|+
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~----------------~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdv 155 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPT----------------LIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcc----------------eeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEEC
Confidence 34555555666777877665443221 1111111 133445555 6888888886666788887
Q ss_pred CCCe---EEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCC-CeEEEEEeCCCCeEEEEEe
Q 004207 585 ESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 585 ~t~~---~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~-~V~slafsp~g~~lLaSgs 660 (768)
.+.. +...+......-..++.+ |++-+.+.+|+-+.|-|+..+..+...-.-..+ .+.++..+++.. +++..
T Consensus 156 sdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy- 231 (370)
T COG5276 156 SDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVY- 231 (370)
T ss_pred CCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEc-
Confidence 6532 334444444445667776 778888889999999999876654332222223 677777776532 33333
Q ss_pred CCCcEEEEECCCCeeEEEEe---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 661 NNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 661 ~Dg~I~iWDl~sg~~i~~~~---~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
+--+.+-|..+.+....+. ....+..-.|.-.+++.+.+..+..+.+.|+.+
T Consensus 232 -~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 232 -DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred -ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 3457777877655333332 222221112333344555555555555555543
No 433
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.40 E-value=0.38 Score=36.98 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 597 ~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999984
No 434
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.37 E-value=16 Score=43.58 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=88.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--Eecc-CCC-CEEEEEEcC------CCCEEEEEeC-CC---c
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEE-HTQ-WITDVRFSP------SLSRLATSSA-DR---T 620 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~--tl~~-h~~-~V~sl~fsp------dg~~LaTgs~-Dg---t 620 (768)
.+.|..|.|.++++.+++...+|.|.+||...+.... .+.. +.. -+++ +|-+ ...++++.+. ++ .
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 6779999999999999999999999999983322221 2211 111 1111 2222 2345555554 32 5
Q ss_pred EEEEECCCCCeeEEEee---cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCee-----EEEEe-
Q 004207 621 VRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----QMRFQ- 691 (768)
Q Consensus 621 IrVWDl~t~~~~~~~~~---~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~-----sl~fs- 691 (768)
.+++.+......+..+. .+........|+...+.++.- .+++|.+|++.+.+...++.....+. .+.+.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 77888722121122221 222233344444433434433 57899999999888887776532221 12332
Q ss_pred cCCCEEEEEEcCCeEEEEECCCceEe
Q 004207 692 PRLGRILAAAIENYISILDVETQVCR 717 (768)
Q Consensus 692 p~~~~llags~Dg~I~IwD~~t~~~~ 717 (768)
|..++++ -+.++.|++.|+.-....
T Consensus 286 ~s~nRvL-Ls~~nkIyLld~~~~siL 310 (670)
T PF10395_consen 286 PSPNRVL-LSVNNKIYLLDLKFESIL 310 (670)
T ss_pred CCCCeEE-EEcCCEEEEEeehhhhhh
Confidence 2223333 345688999998655443
No 435
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.21 E-value=18 Score=38.40 Aligned_cols=153 Identities=13% Similarity=0.034 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEee
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~ 637 (768)
-..++-.+||...+++...+.|--.|-.+++....-.+....-..|..-||+..-+|-+.. .|.-.|-++.+.....+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4567778899999999888889889999999887666666667788888998877665444 566667666554332222
Q ss_pred --cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 004207 638 --GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 638 --~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~--~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
.-........|.+.|. +.+++.. |.---.|-. ...+.++.. ......||..|+|...++.-.++.|...|..+
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 2245677888999987 4446642 211111111 122333332 34567788889888887777777777777655
Q ss_pred c
Q 004207 714 Q 714 (768)
Q Consensus 714 ~ 714 (768)
.
T Consensus 220 ~ 220 (353)
T COG4257 220 G 220 (353)
T ss_pred C
Confidence 4
No 436
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.07 E-value=13 Score=40.41 Aligned_cols=107 Identities=8% Similarity=0.089 Sum_probs=51.7
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeE---EEEeccCCCCE--EEEEEcCCCCEEEEEeC-----CCcEEEEECCCCC
Q 004207 566 DGKLLATGGHDK-----KAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD 630 (768)
Q Consensus 566 dg~~LaSgs~Dg-----~I~VWdl~t~~~---~~tl~~h~~~V--~sl~fspdg~~LaTgs~-----DgtIrVWDl~t~~ 630 (768)
++.+++.|+.++ .+..||+.+.+- ...+..-..+. .+++.. ++++.+.|+. ...+.+||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 566777777543 466777766542 11221111111 122222 4566666664 2368888988765
Q ss_pred eeEE-EeecCCCCeEEEEEeCCCCeEEEEEeCCC----cEEEEECCCCee
Q 004207 631 YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSC 675 (768)
Q Consensus 631 ~~~~-~~~~h~~~V~slafsp~g~~lLaSgs~Dg----~I~iWDl~sg~~ 675 (768)
.... .+... ......+..-+ +.+++.|+.++ .+.+||.++.+-
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence 4221 11111 11111221222 45777777653 356788876553
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=91.63 E-value=25 Score=38.76 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=79.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEE-EECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee
Q 004207 597 TQWITDVRFSPSLSRLATSSADRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (768)
Q Consensus 597 ~~~V~sl~fspdg~~LaTgs~DgtIrV-WDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~ 675 (768)
...+.++.+.+++.+++++ ..|.+.. +|-. ++.-......-...++++.+.+++. +++++ ..|.+++=+...+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 4568899999988766555 4554432 2222 1211122223456789999999876 44344 456665323343332
Q ss_pred EEEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeC
Q 004207 676 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAAST 750 (768)
Q Consensus 676 i~~~~~-----~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~sp 750 (768)
-..... ...+..+.+.+++. +++++.+|.|.. ....++. |..... ...-....+.+.|..
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~t---------W~~~~~----~~~~~~~~~~~~~~~ 312 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKT---------WEKDPV----GEEVPSNFYKIVFLD 312 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCC---------CeECCc----CCCCCcceEEEEEeC
Confidence 222111 23467788888755 566666775543 2222211 111000 001123467777776
Q ss_pred CCCEEEEEECCCcEEEeC
Q 004207 751 VNGMVASASHDKCVKIWK 768 (768)
Q Consensus 751 dg~~LaSgs~DG~V~IWD 768 (768)
++..++ .+..|.|..|+
T Consensus 313 ~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 313 PEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CCceEE-ECCCceEEEec
Confidence 666555 55667776653
No 438
>PRK13684 Ycf48-like protein; Provisional
Probab=91.63 E-value=7.5 Score=42.80 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=83.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~ 633 (768)
...+.++.+.+++.+++++ ..|.+..-....++.-..+ ..-...++++.+.++++.++++ ..|.+++=..+.+.. -
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-W 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-W 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-c
Confidence 4578999999988777665 4565443211222212112 2334578999999998876665 567664323333321 1
Q ss_pred EEeec----CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCeeEEEEecCCCEEEEEEcCCe
Q 004207 634 RTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAAAIENY 705 (768)
Q Consensus 634 ~~~~~----h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~~~~i~sl~fsp~~~~llags~Dg~ 705 (768)
..... ....+.++.+.+++. +++++ .+|.|. .....++.-.... .......+.|..++ ..++++..|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~G~ 324 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE-IWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE-KGFVLGQRGV 324 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC-EEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCC-ceEEECCCce
Confidence 11111 123578899998765 55444 466554 4444444333222 12346677776653 5567777888
Q ss_pred EEEEEC
Q 004207 706 ISILDV 711 (768)
Q Consensus 706 I~IwD~ 711 (768)
|..|+-
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 877754
No 439
>PHA02790 Kelch-like protein; Provisional
Probab=91.40 E-value=8.9 Score=44.45 Aligned_cols=104 Identities=9% Similarity=0.027 Sum_probs=51.9
Q ss_pred CCCEEEEEeCCC--cEEEEECCCCeEE--EEeccCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCeeEEEeec
Q 004207 566 DGKLLATGGHDK--KAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTG 638 (768)
Q Consensus 566 dg~~LaSgs~Dg--~I~VWdl~t~~~~--~tl~~h~~~V~sl~fspdg~~LaTgs~Dg---tIrVWDl~t~~~~~~~~~~ 638 (768)
++.+.++||.++ .+..||..+.+-. ..+.........+. -++.+.+.|+.++ .+..||.++..........
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 677778887643 5777886654322 12211111112222 2466777777654 4778888765532211111
Q ss_pred CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeE
Q 004207 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (768)
Q Consensus 639 h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i 676 (768)
....-.+++.. ++.+++.|+ .+.+||.++.+-.
T Consensus 396 ~~r~~~~~~~~--~~~IYv~GG---~~e~ydp~~~~W~ 428 (480)
T PHA02790 396 YPHYKSCALVF--GRRLFLVGR---NAEFYCESSNTWT 428 (480)
T ss_pred CccccceEEEE--CCEEEEECC---ceEEecCCCCcEe
Confidence 11111122222 245666664 5778888765443
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.26 E-value=5.5 Score=47.74 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=74.7
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C-------------eEEEEeccCCCCEEEEEEc--CCCCEEE
Q 004207 558 VESCHFSP--DGKLLATGGHDKKAVLWCTES-------F-------------TVKSTLEEHTQWITDVRFS--PSLSRLA 613 (768)
Q Consensus 558 I~sl~fSp--dg~~LaSgs~Dg~I~VWdl~t-------~-------------~~~~tl~~h~~~V~sl~fs--pdg~~La 613 (768)
|+-|.... +...|+.|..||.|.+|.+++ . ++...+. -...++.++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55555544 455799999999999996532 0 0112222 23468999998 7778888
Q ss_pred EEeCCCcEEEEECCC--CCeeEEEeecCCCCeEEEEEeCCC-----CeEEEEEeCCCcEEEEEC
Q 004207 614 TSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSI 670 (768)
Q Consensus 614 Tgs~DgtIrVWDl~t--~~~~~~~~~~h~~~V~slafsp~g-----~~lLaSgs~Dg~I~iWDl 670 (768)
+++....|.||-+.. .+.....-..|...|.+|+|.++. ...+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888876543 221111122366779999997754 236778888999999887
No 441
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=91.26 E-value=0.06 Score=57.26 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=0.0
Q ss_pred HHhhcccccCCCCC
Q 004207 121 QQQQRRDSTQHLND 134 (768)
Q Consensus 121 qq~q~~~~~~~~~~ 134 (768)
||+++..+.+.+||
T Consensus 371 QQ~qQ~qQq~qmng 384 (468)
T PF11498_consen 371 QQQQQQQQQHQMNG 384 (468)
T ss_dssp --------------
T ss_pred HHHHhhhhhhhccc
Confidence 34444455566786
No 442
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.77 E-value=6 Score=44.92 Aligned_cols=29 Identities=10% Similarity=0.376 Sum_probs=23.7
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 740 DKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 740 ~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
+..|.++++.+..+.|++.+.+|.|.+||
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~ 217 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWD 217 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEE
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEE
Confidence 34499999999999999999999999996
No 443
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.45 E-value=6.8 Score=47.01 Aligned_cols=104 Identities=10% Similarity=0.097 Sum_probs=65.2
Q ss_pred CCeEEEEEeCCCcEEEEECCC-------C-------------eeEEEEecCCCeeEEEEe--cCCCEEEEEEcCCeEEEE
Q 004207 652 KEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILAAAIENYISIL 709 (768)
Q Consensus 652 g~~lLaSgs~Dg~I~iWDl~s-------g-------------~~i~~~~~~~~i~sl~fs--p~~~~llags~Dg~I~Iw 709 (768)
+..+|+.|.+||.|.+|.+++ . ++...+..+..+..++++ ...+.|++++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 356888999999999996531 0 122334446678889998 665666666667777776
Q ss_pred ECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCC---C---EEEEEECCCcEEEeC
Q 004207 710 DVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVN---G---MVASASHDKCVKIWK 768 (768)
Q Consensus 710 D~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg---~---~LaSgs~DG~V~IWD 768 (768)
-.......... ..-..|...|-+|+|-++. . +|++++-.|.|.+|+
T Consensus 193 af~l~~~r~~~-------------~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 193 AFALVDERFYH-------------VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEecccccccc-------------ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 55432110000 0011245568888887654 2 778888899888874
No 444
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.43 E-value=9.3 Score=46.42 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=49.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCCe--eEEEe--------ecCCCCeEEEEEeCCC---CeE
Q 004207 598 QWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDY--SLRTF--------TGHSTTVMSLDFHPSK---EDL 655 (768)
Q Consensus 598 ~~V~sl~fspdg~~LaTgs~DgtIrVWDl~---------t~~~--~~~~~--------~~h~~~V~slafsp~g---~~l 655 (768)
..|..|.++|+|++|+..|..|.+.+.=.+ .++. ..+++ ..+...|..+.|||.+ .++
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468899999999999999887744333222 1111 11221 1345678999999974 444
Q ss_pred EEEEeCCCcEEEEECCC
Q 004207 656 LCSCDNNSEIRYWSINN 672 (768)
Q Consensus 656 LaSgs~Dg~I~iWDl~s 672 (768)
+ +-..|++||+||+..
T Consensus 165 ~-vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 V-VLTSDNTLRLYDISD 180 (717)
T ss_pred E-EEecCCEEEEEecCC
Confidence 4 556699999999975
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.30 E-value=5.5 Score=40.73 Aligned_cols=112 Identities=8% Similarity=0.145 Sum_probs=66.9
Q ss_pred CeEEEEEeCCCcEEEEECC--CCeeEEEEecCCCeeEEEEecCCCEEEEEEcCC------eEEEE-ECCCceEeeeccee
Q 004207 653 EDLLCSCDNNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN------YISIL-DVETQVCRLKLQTL 723 (768)
Q Consensus 653 ~~lLaSgs~Dg~I~iWDl~--sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg------~I~Iw-D~~t~~~~~~~~~I 723 (768)
+.+|++ ...+.|.+|++. .......|..-+.|..+.++..|+|+++--.++ .+++| +++........-.+
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 345443 456789999998 345667888888999999999999999875432 45554 33222111000012
Q ss_pred EEee----------cC-CCceEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 004207 724 ELWN----------MT-ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 767 (768)
Q Consensus 724 ~iwd----------~~-~~~~~~l~~H~~~I~sla~spdg~~LaSgs~DG~V~IW 767 (768)
++-. .. .-.++++ .-...+.+++..|-.+-|+.|+.+ ++.||
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiEl-Pl~~~p~ciaCC~~tG~LlVg~~~-~l~lf 160 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIEL-PLSEPPLCIACCPVTGNLLVGCGN-KLVLF 160 (215)
T ss_pred EEcccccccCCCCccccceEEEEe-cCCCCCCEEEecCCCCCEEEEcCC-EEEEE
Confidence 2211 00 0112233 235678899988877777777654 66666
No 446
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.97 E-value=12 Score=38.86 Aligned_cols=133 Identities=12% Similarity=0.133 Sum_probs=76.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEC
Q 004207 557 KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDT 626 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~D---------g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~La-Tgs~DgtIrVWDl 626 (768)
+.+.-..+|+|++++-.-.| |.++.|-.. ..+..+...-.--+.++|+.+.+.+. +-+.+-+|.-||.
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 34455568899985432222 233444321 11222222223335788988766554 4455678877884
Q ss_pred --CCCCe----eEEEeec----CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec-CCCeeEEEEec
Q 004207 627 --ENPDY----SLRTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP 692 (768)
Q Consensus 627 --~t~~~----~~~~~~~----h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~-~~~i~sl~fsp 692 (768)
.++.. .+..+.. ..-..-.++...+|. +++++-..++|..+|..+|+.+.+++. ...+++++|--
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 44321 1222211 011122344455554 666777789999999999999999987 45588999854
No 447
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.62 E-value=45 Score=39.91 Aligned_cols=121 Identities=13% Similarity=0.162 Sum_probs=64.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE--EEeecCCC------CeEEEEEeCCCCeEEEEEe-CC--CcE
Q 004207 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHST------TVMSLDFHPSKEDLLCSCD-NN--SEI 665 (768)
Q Consensus 597 ~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~--~~~~~h~~------~V~slafsp~g~~lLaSgs-~D--g~I 665 (768)
.+.|..|.|..+++.+++...+|.|.+||...+.... ..-..+.. .|...........+|+.+. .+ -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5679999999999999999999999999993322111 11111221 2222221122344454444 22 346
Q ss_pred EEEEC--CCCeeEEEE---ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEee
Q 004207 666 RYWSI--NNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 718 (768)
Q Consensus 666 ~iWDl--~sg~~i~~~---~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~ 718 (768)
+++.+ +...+...- ..........|....+.++.- .++.|.+|++.......
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~ 265 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQK 265 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEE
Confidence 67777 322222221 112223333444334555444 66788888887765443
No 448
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.60 E-value=22 Score=39.50 Aligned_cols=147 Identities=10% Similarity=0.047 Sum_probs=80.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC-CC
Q 004207 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT 642 (768)
Q Consensus 566 dg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~--~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~-~~ 642 (768)
++ .++++..||.|.-.|.++++.+.....-. ..+.+-.+..+|+ |+.++.++.++.+|.+++.. +-...... ..
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~ 144 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSPY 144 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCCeE
Confidence 44 44455778888888988888765433221 2222222333555 77888899899999987775 33333222 11
Q ss_pred eEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCe-eEEEE--ecCCCEEEEEEc--CCeEEEEECCCceEe
Q 004207 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRF--QPRLGRILAAAI--ENYISILDVETQVCR 717 (768)
Q Consensus 643 V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i-~sl~f--sp~~~~llags~--Dg~I~IwD~~t~~~~ 717 (768)
+..-..-.++ .+..++.++.+...|..++...........+ ..+.. ......++.+.. ++.+.-+|..++...
T Consensus 145 ~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 2222222232 3334446789999999888887765543210 00000 122334555554 556666676665443
No 449
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.09 E-value=11 Score=39.54 Aligned_cols=141 Identities=13% Similarity=0.153 Sum_probs=74.5
Q ss_pred EEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC-C-CeeEEEe---ecCCCCeEEEEEeC
Q 004207 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN-P-DYSLRTF---TGHSTTVMSLDFHP 650 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~D---gtIrVWDl~t-~-~~~~~~~---~~h~~~V~slafsp 650 (768)
-.+||+.+.+....-....-...+-.|-+||++|.+|+.. ..|++++... . .+..... ......-.++...+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578888766543222222233344578899999998762 3588888654 1 1100000 11223334455567
Q ss_pred CCCeEEEEEeCCCcEEEEECCC-CeeEEEEec--------C-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeec
Q 004207 651 SKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC--------Q-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (768)
Q Consensus 651 ~g~~lLaSgs~Dg~I~iWDl~s-g~~i~~~~~--------~-~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~ 720 (768)
||+.+++.|....+..+|.-+. ......+.. . .--..+...|+|+.++.+..+. .|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 8886665555555566666432 111111110 0 1122466688888777776654 45687776554443
Q ss_pred c
Q 004207 721 Q 721 (768)
Q Consensus 721 ~ 721 (768)
.
T Consensus 206 P 206 (243)
T PF07250_consen 206 P 206 (243)
T ss_pred C
Confidence 3
No 450
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.02 E-value=4.5 Score=45.77 Aligned_cols=88 Identities=15% Similarity=0.087 Sum_probs=63.8
Q ss_pred CceeeEEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEc----CCCC-------
Q 004207 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLS------- 610 (768)
Q Consensus 542 ~~~~~~~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fs----pdg~------- 610 (768)
.........+......+.+|+.+|++.+.|+...=|+|.++|+.++..++.+++-.+.= +.|. ...+
T Consensus 294 ~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~ 371 (415)
T PF14655_consen 294 AAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNS 371 (415)
T ss_pred CcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccc
Confidence 34455566777888889999999999999998888999999999999988888765531 2221 1111
Q ss_pred ----------EEEEEeCCCcEEEEECCCCCe
Q 004207 611 ----------RLATSSADRTVRVWDTENPDY 631 (768)
Q Consensus 611 ----------~LaTgs~DgtIrVWDl~t~~~ 631 (768)
+++-+-.-|.|.||.++++..
T Consensus 372 ~~~~~~~~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 372 PKSSSRFALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred cCCCCcceEEEEEEeccCCeEEEEecCCCCE
Confidence 234455677888888887654
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.92 E-value=30 Score=39.09 Aligned_cols=143 Identities=8% Similarity=0.067 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEE-EEECCCCeE--EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe---
Q 004207 558 VESCHFSPDGKLLATGGHDKKAV-LWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--- 631 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~-VWdl~t~~~--~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~--- 631 (768)
...+..++|+.+++.+.. |.+. -|| .+.. ...-......++++.|.+++..++++ .+|.|. |..+.+..
T Consensus 241 f~~v~~~~dG~~~~vg~~-G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSR-GNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECC-ccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence 555667788877777654 4433 343 2221 11112234568999999998877665 566553 33333321
Q ss_pred -eEEEeec--CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe----cCCCeeEEEEecCCCEEEEEEcCC
Q 004207 632 -SLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAAAIEN 704 (768)
Q Consensus 632 -~~~~~~~--h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~----~~~~i~sl~fsp~~~~llags~Dg 704 (768)
....... ....++++.|.+++. ++++| .+|.|.... ..|+.-.... .......+.|.++ +..++.+.+|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~-~~g~~~G~~G 391 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKE-AWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDD-KKGFVLGNDG 391 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCc-EEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCC-CceEEEeCCc
Confidence 1121111 123588999988755 55444 467665543 3344322222 1355778888776 4566777788
Q ss_pred eEEEE
Q 004207 705 YISIL 709 (768)
Q Consensus 705 ~I~Iw 709 (768)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77654
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.91 E-value=23 Score=43.70 Aligned_cols=120 Identities=15% Similarity=0.239 Sum_probs=71.7
Q ss_pred cCCCCEEEEEEc---C----CCCEEEEEeCCCcEEEEECC------CCC--------eeEEEeec---CCCCeEEEEEeC
Q 004207 595 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTE------NPD--------YSLRTFTG---HSTTVMSLDFHP 650 (768)
Q Consensus 595 ~h~~~V~sl~fs---p----dg~~LaTgs~DgtIrVWDl~------t~~--------~~~~~~~~---h~~~V~slafsp 650 (768)
....+|..|+|. . ..++|++ -....+.|+... ... .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 356788999987 2 1234444 445566777621 100 11222221 234678899999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCC------eeE------EEE-e---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 004207 651 SKEDLLCSCDNNSEIRYWSINNG------SCA------GVF-K---CQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 651 ~g~~lLaSgs~Dg~I~iWDl~sg------~~i------~~~-~---~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~ 714 (768)
....-||+.+..|...|||+... ... ..+ . .......+.|.++.+.|++++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 88888999999999999999211 110 111 0 0122346788777676666654 45778888776
Q ss_pred eE
Q 004207 715 VC 716 (768)
Q Consensus 715 ~~ 716 (768)
..
T Consensus 235 ~~ 236 (765)
T PF10214_consen 235 WQ 236 (765)
T ss_pred Cc
Confidence 44
No 453
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=88.82 E-value=31 Score=42.46 Aligned_cols=80 Identities=11% Similarity=-0.091 Sum_probs=52.2
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceE-------EeccCCCCeeEEEEeCCCCE
Q 004207 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTL-------TLSAHDKLVSSLAASTVNGM 754 (768)
Q Consensus 682 ~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~-------~l~~H~~~I~sla~spdg~~ 754 (768)
...|.++....-+..++.+..||+|.++|..+.+...... .-+.....+. .+ .+-..+..++|||.+.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~---~~~~~~~~v~s~~~~Gf~f-p~~~~~~~vafSPt~c~ 334 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETR---TNGEPPNTVTSLFQAGFHF-PCIQPPLHVAFSPTMCS 334 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccc---cccCCcccccccccccccc-ccCCCCceEEECcccce
Confidence 3456777777777788999999999999998875543320 0000011011 11 22225667999999999
Q ss_pred EEEEECCCcEE
Q 004207 755 VASASHDKCVK 765 (768)
Q Consensus 755 LaSgs~DG~V~ 765 (768)
++.-..||.+.
T Consensus 335 ~v~~~~~~~~~ 345 (753)
T PF11635_consen 335 LVQIDEDGKTK 345 (753)
T ss_pred EEEEecCCCce
Confidence 99999988854
No 454
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.43 E-value=5.3 Score=45.20 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=62.9
Q ss_pred EEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCe-EEEEEeCC-----------------
Q 004207 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPS----------------- 651 (768)
Q Consensus 590 ~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V-~slafsp~----------------- 651 (768)
...+......+.+|+.+|++++.++...-|.|.++|+.++.. ++.++|..+.= .-+.....
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v-vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV-VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh-hhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 344555556789999999999988888889999999998654 66676654321 11111111
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeEEEEec
Q 004207 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (768)
Q Consensus 652 g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~ 681 (768)
...|++-.-.-|.|.||++++|..+..+..
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 113444566789999999999988887764
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.23 E-value=2 Score=31.24 Aligned_cols=41 Identities=5% Similarity=0.067 Sum_probs=32.8
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEE
Q 004207 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF 690 (768)
Q Consensus 650 p~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~f 690 (768)
|+++.+++++..++.|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 56778888888899999999999998888877555555555
No 456
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.21 E-value=25 Score=38.64 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEe----ccCCCCEEEEEEcCC---CCEEEEEeC-C--------
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D-------- 618 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~---~~tl----~~h~~~V~sl~fspd---g~~LaTgs~-D-------- 618 (768)
-++|+|.|||++|++ ...|.|++++ ..+.. +..+ ......+..++|+|+ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999987765 5699999999 34443 2222 123456899999994 334433332 1
Q ss_pred CcEEEEECCCCC-------eeEEEeec---CCCCeEEEEEeCCCCeEEEEEe
Q 004207 619 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD 660 (768)
Q Consensus 619 gtIrVWDl~t~~-------~~~~~~~~---h~~~V~slafsp~g~~lLaSgs 660 (768)
..|.-|...... ..+..+.. .......|.|.|+|..++.+|+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 234444444331 11122222 2344577999999854444443
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.00 E-value=3 Score=43.09 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=51.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCeeEEE------ee-------cCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRT------FT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (768)
Q Consensus 605 fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~------~~-------~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~ 671 (768)
+..++.+|++.+.+|.+++||+.+.+..+.. +. .....|..+.++.+|.-++ +-+ +|..+.||..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV-~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIV-TLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEE-EEe-CCCEEEeccc
Confidence 4446789999999999999999987653322 22 3456788888887776444 444 5788999877
Q ss_pred CCeeEEEE
Q 004207 672 NGSCAGVF 679 (768)
Q Consensus 672 sg~~i~~~ 679 (768)
-+.-+...
T Consensus 96 L~~W~~vs 103 (219)
T PF07569_consen 96 LGCWIRVS 103 (219)
T ss_pred cceeEEec
Confidence 65554443
No 458
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.94 E-value=2.8 Score=43.32 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=46.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------E-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 563 fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl-------~-------~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
+..++.+|++...+|.+++||+.+.+.+..- . .....|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3447889999999999999999998765332 1 2345677777777776666654 46677777653
No 459
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.42 E-value=49 Score=36.22 Aligned_cols=142 Identities=12% Similarity=0.186 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCc------EEEEECCC--C--e---EE--EEeccCCC--------CEEEEEEcCCCCEE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKK------AVLWCTES--F--T---VK--STLEEHTQ--------WITDVRFSPSLSRL 612 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~------I~VWdl~t--~--~---~~--~tl~~h~~--------~V~sl~fspdg~~L 612 (768)
+.+..|.+.+++..+++.+.+|. +..+++.. . . .. ..+....+ ...+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45788999876666666777777 66555443 1 1 11 11111111 34578887788888
Q ss_pred EEEeCC------CcEEEEECCCCCeeEEEe---------------ecCCCCeEEEEEeCCCCeEEEEEe----CCC--c-
Q 004207 613 ATSSAD------RTVRVWDTENPDYSLRTF---------------TGHSTTVMSLDFHPSKEDLLCSCD----NNS--E- 664 (768)
Q Consensus 613 aTgs~D------gtIrVWDl~t~~~~~~~~---------------~~h~~~V~slafsp~g~~lLaSgs----~Dg--~- 664 (768)
++.-.+ ..|+.++.+ +.. +..+ ...+..+-+|+++|+|..++++.- .|+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 887777 788888876 332 1111 123456899999999986664321 122 1
Q ss_pred ------EEE--EECCC-CeeEEE----Ee------cCCCeeEEEEecCCCEEEE
Q 004207 665 ------IRY--WSINN-GSCAGV----FK------CQSGATQMRFQPRLGRILA 699 (768)
Q Consensus 665 ------I~i--WDl~s-g~~i~~----~~------~~~~i~sl~fsp~~~~lla 699 (768)
+++ ||..+ +..... +. ....+..+.+.+++..++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 55554 322222 22 2355788889998775544
No 460
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.13 E-value=53 Score=38.09 Aligned_cols=197 Identities=13% Similarity=0.111 Sum_probs=94.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCC---EEEEEEcCCCCEEEEEeC-------------CCcEEEE
Q 004207 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW---ITDVRFSPSLSRLATSSA-------------DRTVRVW 624 (768)
Q Consensus 561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~---V~sl~fspdg~~LaTgs~-------------DgtIrVW 624 (768)
+.+-++|.+++..+ ..++.+|+. |+.+..+...... =.++.+.|+|++|+.+.. ...|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 55667888776655 678888875 5665554322211 235667888988887771 1123333
Q ss_pred ECCCCCeeEEEee--cC-------------------------CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE
Q 004207 625 DTENPDYSLRTFT--GH-------------------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (768)
Q Consensus 625 Dl~t~~~~~~~~~--~h-------------------------~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~ 677 (768)
| .+++. +..+. .| =..+.++.+.+..+.+++++..-..|...|.+++++..
T Consensus 230 d-~tG~v-v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 230 D-PTGEV-VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp --TTS-E-EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred C-CCCCE-EEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 4 33332 11110 00 02478999999777888888777789999988888887
Q ss_pred EEecCCCee----EEEEec------------------CCCEEEEEEcCC---eEEEEECCCceEeee---------ccee
Q 004207 678 VFKCQSGAT----QMRFQP------------------RLGRILAAAIEN---YISILDVETQVCRLK---------LQTL 723 (768)
Q Consensus 678 ~~~~~~~i~----sl~fsp------------------~~~~llags~Dg---~I~IwD~~t~~~~~~---------~~~I 723 (768)
.+..+.... ...+.| -+.+-+.-..++ .|.+||-........ ...+
T Consensus 308 ilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~ 387 (477)
T PF05935_consen 308 ILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRA 387 (477)
T ss_dssp EES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCCG-----EE
T ss_pred EeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCCCCccccccccccceE
Confidence 776432211 011111 123344444566 888888755432211 1123
Q ss_pred EEeecCC--CceE---Eecc------CCCCeeEEEEeCC-CCEEEEEECCC
Q 004207 724 ELWNMTE--NKTL---TLSA------HDKLVSSLAASTV-NGMVASASHDK 762 (768)
Q Consensus 724 ~iwd~~~--~~~~---~l~~------H~~~I~sla~spd-g~~LaSgs~DG 762 (768)
..|.+.. .... .+.. .+..|.++.+-++ |++|++.+..|
T Consensus 388 v~Y~Ide~~~T~~~vw~y~~~~g~~~yS~~~s~aq~l~n~gn~li~~g~~~ 438 (477)
T PF05935_consen 388 VEYRIDENKMTVEQVWEYGKPRGNEFYSPIVSSAQYLPNKGNTLITSGMAG 438 (477)
T ss_dssp EEEEEETTTTEEEEEEEESGGGGGGG--SS--EEEEETTTTEEEEEEEEET
T ss_pred EEEEecCCCceEEEEEEeCCCCCCCccCCcceeeEEecCCCCEEEEeCccc
Confidence 3333222 2221 1111 3456777888898 88888877554
No 461
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.01 E-value=6.1 Score=49.62 Aligned_cols=139 Identities=13% Similarity=0.236 Sum_probs=84.4
Q ss_pred eCCCcEEEEECCCCeEEEEeccCCCCEEEEEE--------cCCCCEEEEEeCCCcEEEEECCCCCe--eEE------Eee
Q 004207 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--------SPSLSRLATSSADRTVRVWDTENPDY--SLR------TFT 637 (768)
Q Consensus 574 s~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~f--------spdg~~LaTgs~DgtIrVWDl~t~~~--~~~------~~~ 637 (768)
+-|..+.+|+.+++.....+.+-...|..|.. -|.=++++..+.--.|.|+-+.-.+. ... .+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35789999999997777777766666766654 22334555555555566665432111 011 112
Q ss_pred cCCCCeEEEEEeCCCCeEEEEEeCCCcEEE--EECCCC---e-e-----------------EEEE-ecCCCeeEEEEecC
Q 004207 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY--WSINNG---S-C-----------------AGVF-KCQSGATQMRFQPR 693 (768)
Q Consensus 638 ~h~~~V~slafsp~g~~lLaSgs~Dg~I~i--WDl~sg---~-~-----------------i~~~-~~~~~i~sl~fsp~ 693 (768)
.....|.|+....+|+ +|++|. ||.|+- |...++ + | .... ....+|..+.+...
T Consensus 176 ~dg~~V~~I~~t~nGR-IF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR-IFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCCc-EEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 2345788888666655 665555 554432 222211 1 1 0111 12457888999888
Q ss_pred CCEEEEEEcCCeEEEEECCCc
Q 004207 694 LGRILAAAIENYISILDVETQ 714 (768)
Q Consensus 694 ~~~llags~Dg~I~IwD~~t~ 714 (768)
.+.+++-+..++|.+||+...
T Consensus 254 R~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred cceeeeeccCceEEEEEccCC
Confidence 888999999999999999873
No 462
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=86.33 E-value=58 Score=41.40 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=10.8
Q ss_pred EEEEEcCCCCEEEEEe
Q 004207 559 ESCHFSPDGKLLATGG 574 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs 574 (768)
.+|+++++|.+.++-+
T Consensus 596 r~Iavg~~G~lyvaEs 611 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAES 611 (1899)
T ss_pred hceeecCCceEEEEec
Confidence 5678888887655543
No 463
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.25 E-value=36 Score=36.94 Aligned_cols=66 Identities=9% Similarity=0.049 Sum_probs=32.7
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCCee--EEEeecCCCCe--EEEEEeCCCCeEEEEEeC-----CCcEEEEECCCC
Q 004207 608 SLSRLATSSADR-----TVRVWDTENPDYS--LRTFTGHSTTV--MSLDFHPSKEDLLCSCDN-----NSEIRYWSINNG 673 (768)
Q Consensus 608 dg~~LaTgs~Dg-----tIrVWDl~t~~~~--~~~~~~h~~~V--~slafsp~g~~lLaSgs~-----Dg~I~iWDl~sg 673 (768)
++.+++.|+.++ .+..||+.+.... ...+..-..+. .+++.. +..+++.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 455667776543 5677777665431 11111111111 122222 2456666664 235788888765
Q ss_pred ee
Q 004207 674 SC 675 (768)
Q Consensus 674 ~~ 675 (768)
+-
T Consensus 150 ~W 151 (323)
T TIGR03548 150 EW 151 (323)
T ss_pred Ce
Confidence 43
No 464
>PLN02153 epithiospecifier protein
Probab=86.19 E-value=43 Score=36.70 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=33.8
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEE--EEecc---CCCCEEEEEEcCCCCEEEEEeCC-----------CcEEEE
Q 004207 566 DGKLLATGGHD-----KKAVLWCTESFTVK--STLEE---HTQWITDVRFSPSLSRLATSSAD-----------RTVRVW 624 (768)
Q Consensus 566 dg~~LaSgs~D-----g~I~VWdl~t~~~~--~tl~~---h~~~V~sl~fspdg~~LaTgs~D-----------gtIrVW 624 (768)
++++++.|+.+ ..|.+||..+.+-. ..+.. ........+..-++++++.|+.+ ..|.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56667777653 25778888764322 11110 11111111122345666776654 247788
Q ss_pred ECCCCCe
Q 004207 625 DTENPDY 631 (768)
Q Consensus 625 Dl~t~~~ 631 (768)
|+++...
T Consensus 165 d~~~~~W 171 (341)
T PLN02153 165 NIADGKW 171 (341)
T ss_pred ECCCCeE
Confidence 9886543
No 465
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.83 E-value=50 Score=38.32 Aligned_cols=143 Identities=13% Similarity=0.048 Sum_probs=73.1
Q ss_pred CCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCC-CCeEEEEEeCCCC
Q 004207 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE 653 (768)
Q Consensus 575 ~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~-~~V~slafsp~g~ 653 (768)
....+.++|.+ |.+...+.........+.+.++|.+++... ..++.+|+.........+.... ..=..+.+.|+|+
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCC
Confidence 45567777754 566655543222221266778888777655 7788888864221122222210 1124566778887
Q ss_pred eEEEEEe-------C-----CCcEEEEECCCCeeEEEEec--------C--------------------CCeeEEEEecC
Q 004207 654 DLLCSCD-------N-----NSEIRYWSINNGSCAGVFKC--------Q--------------------SGATQMRFQPR 693 (768)
Q Consensus 654 ~lLaSgs-------~-----Dg~I~iWDl~sg~~i~~~~~--------~--------------------~~i~sl~fsp~ 693 (768)
.++++.. . +-.|..+| .+|+.+..+.. . -.+.++.+.+.
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 6665541 0 12366667 77777776653 0 12678999996
Q ss_pred CCEEEEEEcC-CeEEEEECCCceEeeecc
Q 004207 694 LGRILAAAIE-NYISILDVETQVCRLKLQ 721 (768)
Q Consensus 694 ~~~llags~D-g~I~IwD~~t~~~~~~~~ 721 (768)
...|++.+.. ..|..+|.++++....+.
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 6777777765 489999988877665554
No 466
>PRK10115 protease 2; Provisional
Probab=85.45 E-value=97 Score=37.73 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=72.5
Q ss_pred EEEEEcCCCCEEEEEeCC------CcEEEEECCCC--eEEEEeccCCCCEE-EEEEcCCCCEEEEEeC---CCcEEEEEC
Q 004207 559 ESCHFSPDGKLLATGGHD------KKAVLWCTESF--TVKSTLEEHTQWIT-DVRFSPSLSRLATSSA---DRTVRVWDT 626 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~D------g~I~VWdl~t~--~~~~tl~~h~~~V~-sl~fspdg~~LaTgs~---DgtIrVWDl 626 (768)
..++|++|++.|+.+..+ ..|+++++.++ +....+........ .+..+.++++++..+. ++.+.+|+.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458999999866655432 35778888877 33334443333333 3333447777665544 357899985
Q ss_pred CCCCeeEEEeecCC-CCeEEEEEeCCCCeEEEEEeC---CCcEEEEECCC-CeeEEEEec--CCCeeEEEEecCCCEEEE
Q 004207 627 ENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINN-GSCAGVFKC--QSGATQMRFQPRLGRILA 699 (768)
Q Consensus 627 ~t~~~~~~~~~~h~-~~V~slafsp~g~~lLaSgs~---Dg~I~iWDl~s-g~~i~~~~~--~~~i~sl~fsp~~~~lla 699 (768)
+........+..+. .....+. +.. ..+++.... ...|...++.. ++....+.. ...+..+.+.. ++|+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~l~~ 330 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT--DWLVV 330 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC--CEEEE
Confidence 43211112222222 2222222 333 334433332 22344445542 222233333 22466677763 35444
Q ss_pred -EEcCCe--EEEEECC
Q 004207 700 -AAIENY--ISILDVE 712 (768)
Q Consensus 700 -gs~Dg~--I~IwD~~ 712 (768)
...++. |.++|..
T Consensus 331 ~~~~~g~~~l~~~~~~ 346 (686)
T PRK10115 331 EERQRGLTSLRQINRK 346 (686)
T ss_pred EEEeCCEEEEEEEcCC
Confidence 444555 3444543
No 467
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=85.44 E-value=41 Score=42.35 Aligned_cols=196 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCc------------------EEEEECCCCeEEEEe----ccCCCCEEEEEEcCCCC--
Q 004207 555 TSKVESCHFSPDGKLLATGGHDKK------------------AVLWCTESFTVKSTL----EEHTQWITDVRFSPSLS-- 610 (768)
Q Consensus 555 ~~~I~sl~fSpdg~~LaSgs~Dg~------------------I~VWdl~t~~~~~tl----~~h~~~V~sl~fspdg~-- 610 (768)
...|+++..+..-.+..++..+.. |.+..-++++.+-.+ ..|.-.+..+...-.+.
T Consensus 964 e~~vy~v~t~~~~~~~~~~~d~~e~~~~~de~~~~p~~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~ 1043 (1366)
T KOG1896|consen 964 EKKVYAVITSTPVPYERLGEDGEEEVISRDENVIHPEGEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTK 1043 (1366)
T ss_pred cceEEEEEEeccceeeecccccccccccccccccccccccceeEEecCCccccccccccCccceeeEEEEEEEEeccccc
Q ss_pred ----EEEEEeC---------CCcEEEEECC-----------CCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEE
Q 004207 611 ----RLATSSA---------DRTVRVWDTE-----------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (768)
Q Consensus 611 ----~LaTgs~---------DgtIrVWDl~-----------t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~ 666 (768)
+|++|.. -|.++|||+- ..+.........+++|..++=- ...|++|. .-.|.
T Consensus 1044 ~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l~~~~-GqKI~ 1119 (1366)
T KOG1896|consen 1044 GKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHLLSSQ-GQKII 1119 (1366)
T ss_pred CCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEEEEcc-CcEEE
Q ss_pred EEEC-CCCeeEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeE
Q 004207 667 YWSI-NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSS 745 (768)
Q Consensus 667 iWDl-~sg~~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~s 745 (768)
+|++ +....+..--..-++......--.++|++|.--..|.++-+.. ....-..+.-....-.+.+
T Consensus 1120 v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqe-------------ep~rlsL~srd~~~l~v~s 1186 (1366)
T KOG1896|consen 1120 VRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQE-------------EPYRLSLLSRDFEPLNVYS 1186 (1366)
T ss_pred EEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEcc-------------CceEEEEeecCCchhhcee
Q ss_pred EEEeCCCC--EEEEEECCCcEEEe
Q 004207 746 LAASTVNG--MVASASHDKCVKIW 767 (768)
Q Consensus 746 la~spdg~--~LaSgs~DG~V~IW 767 (768)
+.|--+|. +|+++..|+.|++|
T Consensus 1187 ~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1187 TEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred eeeEEcCCeeEEEEEcCCCcEEEE
No 468
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.40 E-value=62 Score=35.43 Aligned_cols=53 Identities=13% Similarity=0.021 Sum_probs=25.8
Q ss_pred CCCEEEEEeCC-----------CcEEEEECCCCeEEEEeccCCCCEEE--EEEcCCCCEEEEEeCC
Q 004207 566 DGKLLATGGHD-----------KKAVLWCTESFTVKSTLEEHTQWITD--VRFSPSLSRLATSSAD 618 (768)
Q Consensus 566 dg~~LaSgs~D-----------g~I~VWdl~t~~~~~tl~~h~~~V~s--l~fspdg~~LaTgs~D 618 (768)
++++.+.|+.+ ..+..||..+.+=...-........+ .+..-++++.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 67777777753 24677887664322111011111111 1112356777777764
No 469
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=85.32 E-value=20 Score=40.96 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=87.2
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCC-------EEEEEeCCCcEEEEECCCCCeeEEE-
Q 004207 565 PDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDYSLRT- 635 (768)
Q Consensus 565 pdg~~La-Sgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~-------~LaTgs~DgtIrVWDl~t~~~~~~~- 635 (768)
.|..+|+ .|+....++-.|++.|+++..+..|... -|.|.|+.+ .-++|-.+..|.-.|.+-....+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3555544 5566667888899999999999888764 577877532 2344555666666676543322222
Q ss_pred -eec--CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 004207 636 -FTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDV 711 (768)
Q Consensus 636 -~~~--h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg~I~IwD~ 711 (768)
.+. ......|..-... ..+++++..|.|++||--.-.....+. .+..|..+..+.+|.++++.|. .+|.+.|+
T Consensus 555 esKdY~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eehhccccccccccccccC--ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 111 1122333333333 367789999999999953222222222 2466888889999888877765 56777776
Q ss_pred C
Q 004207 712 E 712 (768)
Q Consensus 712 ~ 712 (768)
.
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 4
No 470
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.95 E-value=60 Score=34.92 Aligned_cols=150 Identities=9% Similarity=0.068 Sum_probs=92.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeE-
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL- 633 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~-h~-~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~- 633 (768)
-+..+.++ +++...+..+.-++|.|+.+......+.. .. +--.++.. .|++..++..|.-+.+.|+.++..+.
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 35566664 56777777888899999987543322211 11 33344444 48899888877778899998766433
Q ss_pred -EEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCe---eEEEEecCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 004207 634 -RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 709 (768)
Q Consensus 634 -~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~---~i~~~~~~~~i~sl~fsp~~~~llags~Dg~I~Iw 709 (768)
..+.........++.+ |++-+ .+..|+-+.+.|+.+.. .+........+.++..+++ +.+..-.+..+.+.
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AY-vA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvliv 238 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAY-VAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLIV 238 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEE-EEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEEE
Confidence 2222233334566666 34334 45568889999997643 3444444557888877776 44444445556677
Q ss_pred ECCCce
Q 004207 710 DVETQV 715 (768)
Q Consensus 710 D~~t~~ 715 (768)
|..+..
T Consensus 239 d~s~~s 244 (370)
T COG5276 239 DVSGPS 244 (370)
T ss_pred ecCCCC
Confidence 766654
No 471
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.87 E-value=3.3 Score=31.17 Aligned_cols=31 Identities=39% Similarity=0.623 Sum_probs=26.3
Q ss_pred CCeEEEEEcCC-C--CEEEEEeCCCcEEEEECCC
Q 004207 556 SKVESCHFSPD-G--KLLATGGHDKKAVLWCTES 586 (768)
Q Consensus 556 ~~I~sl~fSpd-g--~~LaSgs~Dg~I~VWdl~t 586 (768)
+.|.+|.|||+ + .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899988889999999984
No 472
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=83.73 E-value=1.2 Score=54.60 Aligned_cols=6 Identities=33% Similarity=0.296 Sum_probs=3.3
Q ss_pred cccccc
Q 004207 280 QQQKSL 285 (768)
Q Consensus 280 ~~~~~~ 285 (768)
+|.+||
T Consensus 2018 ~q~~~~ 2023 (2131)
T KOG4369|consen 2018 AQQSFM 2023 (2131)
T ss_pred cCCCCC
Confidence 345666
No 473
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.51 E-value=60 Score=40.42 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=66.2
Q ss_pred EEEEECCCCeEEEEeccC----CCCEEEEEEcCCCC--EEEEEeC-----------CCcEEEEECCCCCeeEEEeec--C
Q 004207 579 AVLWCTESFTVKSTLEEH----TQWITDVRFSPSLS--RLATSSA-----------DRTVRVWDTENPDYSLRTFTG--H 639 (768)
Q Consensus 579 I~VWdl~t~~~~~tl~~h----~~~V~sl~fspdg~--~LaTgs~-----------DgtIrVWDl~t~~~~~~~~~~--h 639 (768)
|+++|..+++.+..+... ...|.++.|+.... ++++|+. +|.++.|++-.....+..+.. -
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 677777776666554321 22466666765332 3344332 455777776433332333321 1
Q ss_pred CCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 004207 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISI 708 (768)
Q Consensus 640 ~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~I 708 (768)
.+.| .+.+|..+.+++.. ...+++||+...+..+.... ...|+.+.+.- .++++|.....|.+
T Consensus 935 ~~~v--~Ai~~f~~~~Lagv--G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~--~RI~VgD~qeSV~~ 1000 (1205)
T KOG1898|consen 935 PGPV--GAICPFQGRVLAGV--GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG--ARIVVGDIQESVHF 1000 (1205)
T ss_pred Cccc--eEEeccCCEEEEec--ccEEEEeeCChHHHHhhhhhccCceEEEEEeecc--eEEEEeeccceEEE
Confidence 2333 34567666666433 56899999987665544332 33455555543 46777765554443
No 474
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.48 E-value=5.7 Score=39.31 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=26.7
Q ss_pred CCeEEEEEeCC-----CCeEEEEEeCCCcEEEEECCC
Q 004207 641 TTVMSLDFHPS-----KEDLLCSCDNNSEIRYWSINN 672 (768)
Q Consensus 641 ~~V~slafsp~-----g~~lLaSgs~Dg~I~iWDl~s 672 (768)
..|.+++|+|. ++.+|++...++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 47999999994 467899999999999998663
No 475
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.30 E-value=4 Score=30.77 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.7
Q ss_pred CCeEEEEEeCCCC--eEEEEEeCCCcEEEEECCC
Q 004207 641 TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINN 672 (768)
Q Consensus 641 ~~V~slafsp~g~--~lLaSgs~Dg~I~iWDl~s 672 (768)
+.|.++.|+|... .+|+....-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998655 6888888889999999995
No 476
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.26 E-value=12 Score=42.09 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=63.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCe---eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (768)
Q Consensus 595 ~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~---~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~ 671 (768)
...++|.+|.|++|.+.||+--.|++|.+++.-.... ...........|...+|....+ +.+.. +..+-+|-+.
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~--~~G~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFIT--DQGIEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEe--cCCeEEEEEc
Confidence 3567999999999999999999999999999843221 1122233345588889987643 33222 2345566543
Q ss_pred CC-eeEEEEe-cCCCeeEEEEecCCCEEEEEE
Q 004207 672 NG-SCAGVFK-CQSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 672 sg-~~i~~~~-~~~~i~sl~fsp~~~~llags 701 (768)
.. ..++..+ ....|.-..|.++...++.++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 21 1122222 235667777777766644443
No 477
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.16 E-value=41 Score=40.35 Aligned_cols=155 Identities=13% Similarity=0.099 Sum_probs=75.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE-e--ccCCCCEEEEEEcCCCCEEEEEeCCCcEEE-EECCCCCe
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-L--EEHTQWITDVRFSPSLSRLATSSADRTVRV-WDTENPDY 631 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~t-l--~~h~~~V~sl~fspdg~~LaTgs~DgtIrV-WDl~t~~~ 631 (768)
+.+..+.|+.+.. |++...||+|+||++-....... . ......|..+.|..+|-.+++ .+|.|.+ -+.+...
T Consensus 84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~- 159 (829)
T KOG2280|consen 84 GELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPK- 159 (829)
T ss_pred CCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcch-
Confidence 3788999996554 55667899999999864322221 1 222233555555555544444 3444433 3333211
Q ss_pred eEEEeec---CCCCeEEEEEeCCCC--e-EEEEEeCCCcEEEEECC--CCeeEEEEecCCCeeEEEEecCCCEEEEEEcC
Q 004207 632 SLRTFTG---HSTTVMSLDFHPSKE--D-LLCSCDNNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (768)
Q Consensus 632 ~~~~~~~---h~~~V~slafsp~g~--~-lLaSgs~Dg~I~iWDl~--sg~~i~~~~~~~~i~sl~fsp~~~~llags~D 703 (768)
+..... ...+-.|-...+.+. . ++...-..+ ..++-+. +............+..+.++|+.++|+--...
T Consensus 160 -~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~ 237 (829)
T KOG2280|consen 160 -LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTET 237 (829)
T ss_pred -hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecC
Confidence 111111 111112222222211 1 111110000 0111111 11111111224678889999999998888889
Q ss_pred CeEEEEECCCceE
Q 004207 704 NYISILDVETQVC 716 (768)
Q Consensus 704 g~I~IwD~~t~~~ 716 (768)
|.|.+.+.+...+
T Consensus 238 G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 238 GKIWVVSIDLSQI 250 (829)
T ss_pred CcEEEEecchhhh
Confidence 9988877765543
No 478
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.13 E-value=8.6 Score=43.77 Aligned_cols=61 Identities=13% Similarity=0.306 Sum_probs=48.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECC
Q 004207 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (768)
Q Consensus 608 dg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~ 671 (768)
...++|.+|..|-||+||--. ......+.+....|..|....+|+++||||- ..|.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 346999999999999999643 2224556667788999999999999999984 578888875
No 479
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.91 E-value=13 Score=42.63 Aligned_cols=84 Identities=10% Similarity=0.076 Sum_probs=47.4
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecc----eeEEeecCCCceEEeccCCCCeeEEEEeCCC---CEEEE
Q 004207 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ----TLELWNMTENKTLTLSAHDKLVSSLAASTVN---GMVAS 757 (768)
Q Consensus 685 i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~----~I~iwd~~~~~~~~l~~H~~~I~sla~spdg---~~LaS 757 (768)
|..+..++.|..++.++.+|.+.++=.+.......+. .|.+--..-+..+......-.+..++|+|+. ..|..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 5667888998888888888866554321111000000 1111111111111122223346778999986 57888
Q ss_pred EECCCcEEEeC
Q 004207 758 ASHDKCVKIWK 768 (768)
Q Consensus 758 gs~DG~V~IWD 768 (768)
-+.|.+|+|||
T Consensus 186 L~sdnviRiy~ 196 (741)
T KOG4460|consen 186 LTSDNVIRIYS 196 (741)
T ss_pred EecCcEEEEEe
Confidence 88999999996
No 480
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=82.78 E-value=0.18 Score=56.53 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=96.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE-E
Q 004207 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V 678 (768)
Q Consensus 600 V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~-~ 678 (768)
.....|-+.+.-++.++.+..|..||-..... . -....+....++|+-+++.+++.+...+.+.+||+.+...-. .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~--l-e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVI--L-ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhccee--c-ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 34566888777788999999999999654221 1 112345667789998888888888889999999997532211 1
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEE
Q 004207 679 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 758 (768)
Q Consensus 679 ~~~~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSg 758 (768)
+.....-.-+.|++....++.+...+.+.||+..+.+... ....|...+++++|.+++ +++.+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii----------------v~Gkh~RRgtq~av~lEd-~vil~ 176 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII----------------VMGKHQRRGTQIAVTLED-YVILC 176 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhh----------------hhcccccceeEEEecccc-eeeec
Confidence 1111112226788888888888888888888876644322 222477888999998865 44555
Q ss_pred ECCCc
Q 004207 759 SHDKC 763 (768)
Q Consensus 759 s~DG~ 763 (768)
+.|..
T Consensus 177 dcd~~ 181 (615)
T KOG2247|consen 177 DCDNT 181 (615)
T ss_pred CcHHH
Confidence 55543
No 481
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=82.71 E-value=36 Score=40.81 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=39.0
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCc--EEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEE
Q 004207 594 EEHTQWITDVRFSPSLSRLATSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (768)
Q Consensus 594 ~~h~~~V~sl~fspdg~~LaTgs~Dgt--IrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLa 657 (768)
..+...+..+.|+|++..++..+.++. ..+|-+.... ....+...|....|++.+..+++
T Consensus 56 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 56 LTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred cccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEE
Confidence 345677889999999999988874432 3444433221 23334456778888888876664
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.68 E-value=34 Score=36.38 Aligned_cols=101 Identities=10% Similarity=0.031 Sum_probs=69.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEE
Q 004207 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (768)
Q Consensus 598 ~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~ 677 (768)
..-..|+-.|||..-+++...+.|--.|..+++. ...-.+.......|..-|++...|+-.+ ..|.-+|-++.+..+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~~--~aI~R~dpkt~evt~ 138 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDTG--LAIGRLDPKTLEVTR 138 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecCc--ceeEEecCcccceEE
Confidence 3456788899999999999999998899998886 3444445566778888999886663222 256656665544322
Q ss_pred -EEe---cCCCeeEEEEecCCCEEEEEE
Q 004207 678 -VFK---CQSGATQMRFQPRLGRILAAA 701 (768)
Q Consensus 678 -~~~---~~~~i~sl~fsp~~~~llags 701 (768)
.+. .........|.+.|...+++.
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q 166 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQ 166 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeec
Confidence 111 145577889999988777765
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.59 E-value=7.4 Score=48.93 Aligned_cols=161 Identities=16% Similarity=0.239 Sum_probs=87.9
Q ss_pred EEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEE--------eCCCCeEEEEEeCCCcEEEEEC
Q 004207 600 ITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF--------HPSKEDLLCSCDNNSEIRYWSI 670 (768)
Q Consensus 600 V~sl~fspd-g~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slaf--------sp~g~~lLaSgs~Dg~I~iWDl 670 (768)
-+.+-+.|. ++.-+| -|+.+.+|+.+++.. ...+.+-...|..|.. -|.=.++|+.+. --.|.++-+
T Consensus 81 ~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e-~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV 156 (1311)
T KOG1900|consen 81 KTDMGIFPEIGRAWIT--IDNNLFLWNYESDNE-LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGV 156 (1311)
T ss_pred eeeeccchhhcceEEE--eCCeEEEEEcCCCCc-cccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEE
Confidence 344445554 443444 578899999998543 5556555556666553 223344555444 345666544
Q ss_pred CC----Cee---E--EEEec-CCCeeEEEEecCCCEEEEEEcCCeEEE--EECCCceEeeecceeEEeecCCC-------
Q 004207 671 NN----GSC---A--GVFKC-QSGATQMRFQPRLGRILAAAIENYISI--LDVETQVCRLKLQTLELWNMTEN------- 731 (768)
Q Consensus 671 ~s----g~~---i--~~~~~-~~~i~sl~fsp~~~~llags~Dg~I~I--wD~~t~~~~~~~~~I~iwd~~~~------- 731 (768)
.- +.. . ..+.. +..|.++....+ +.++.++.||.|+- |....+=...+ .+..++..+
T Consensus 157 ~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~n-GRIF~~G~dg~lyEl~Yq~~~gWf~~r---c~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 157 SFDEFTGELSIFNTSFKISVDGVSVNCITYTEN-GRIFFAGRDGNLYELVYQAEDGWFGSR---CRKICLTKSVLSSLVP 232 (1311)
T ss_pred EeccccCcccccccceeeecCCceEEEEEeccC-CcEEEeecCCCEEEEEEeccCchhhcc---cccccCchhHHHHhhh
Confidence 21 111 0 11222 345777775555 45666666664432 22222100000 111111111
Q ss_pred ceEEec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 004207 732 KTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 768 (768)
Q Consensus 732 ~~~~l~-~H~~~I~sla~spdg~~LaSgs~DG~V~IWD 768 (768)
.+..+. .+.++|..+++...-..+.+-+..|+|.+||
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEE
Confidence 122333 6778999999998888999999999999996
No 484
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=82.30 E-value=1.4e+02 Score=37.10 Aligned_cols=154 Identities=8% Similarity=0.007 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC---C------CeEE---EEeccCCCCEEEEEEc--CCCCEEEEEeCCCcEEE
Q 004207 558 VESCHFSPDGKLLATGGHDKKAVLWCTE---S------FTVK---STLEEHTQWITDVRFS--PSLSRLATSSADRTVRV 623 (768)
Q Consensus 558 I~sl~fSpdg~~LaSgs~Dg~I~VWdl~---t------~~~~---~tl~~h~~~V~sl~fs--pdg~~LaTgs~DgtIrV 623 (768)
+..+..+.....|+..+.+|.+...+.. . |..+ ..+.....-|.++... .+..+++..+.+|.|+-
T Consensus 537 l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKR 616 (800)
T TIGR01063 537 IEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKK 616 (800)
T ss_pred eEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEE
Confidence 4444444455666666677877665432 2 1222 1222223334555543 24568899999999998
Q ss_pred EECCCCCe------eEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCC-------CeeEE--EEecCCCeeEE
Q 004207 624 WDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAG--VFKCQSGATQM 688 (768)
Q Consensus 624 WDl~t~~~------~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~s-------g~~i~--~~~~~~~i~sl 688 (768)
.++..-.. ....+.. ...+..+........+++ .+..|.+..+.+.. ..-+. .+.....|.++
T Consensus 617 i~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d~lll-~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~ 694 (800)
T TIGR01063 617 TSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDDEVML-GSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSL 694 (800)
T ss_pred EEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCCEEEE-EECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEE
Confidence 87753211 0111222 234444443334344443 44466665554421 11112 22223345555
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCC
Q 004207 689 RFQPRLGRILAAAIENYISILDVET 713 (768)
Q Consensus 689 ~fsp~~~~llags~Dg~I~IwD~~t 713 (768)
....+...++..+..|.++...+..
T Consensus 695 ~~v~~~~~ll~vT~~G~~Kr~~l~e 719 (800)
T TIGR01063 695 LVVSEESYLLIVTENGYGKRTSIEE 719 (800)
T ss_pred EEeccccEEEEEecCCcEEEEEHHH
Confidence 4444455688888888887776554
No 485
>PRK10350 hypothetical protein; Provisional
Probab=82.14 E-value=8.5 Score=35.57 Aligned_cols=11 Identities=9% Similarity=-0.164 Sum_probs=4.7
Q ss_pred HHHHHHhhhhc
Q 004207 57 SVFWDIFIART 67 (768)
Q Consensus 57 ~~FWdlf~A~~ 67 (768)
+.|-..++.-.
T Consensus 14 ~~~AqplN~~N 24 (145)
T PRK10350 14 VGFAQPINTLN 24 (145)
T ss_pred HHHHhhhhccC
Confidence 34444444433
No 486
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=81.97 E-value=74 Score=33.69 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=49.4
Q ss_pred CCCeEEEEEe------CCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEE----EecCCCEEEEEEcCCeEEEE
Q 004207 640 STTVMSLDFH------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR----FQPRLGRILAAAIENYISIL 709 (768)
Q Consensus 640 ~~~V~slafs------p~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~----fsp~~~~llags~Dg~I~Iw 709 (768)
...|+|++-- ++.-..++.|.++|.|.|.|-........+...+....++ |..-+.+|++++.||.|++.
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 4568888753 2345678899999999999999888888877655433333 32123468889999988764
No 487
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=81.73 E-value=93 Score=34.68 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=8.9
Q ss_pred cEEEEECCCCCe
Q 004207 620 TVRVWDTENPDY 631 (768)
Q Consensus 620 tIrVWDl~t~~~ 631 (768)
.|.+||..+...
T Consensus 190 ~v~~YD~~t~~W 201 (376)
T PRK14131 190 EVLSYDPSTNQW 201 (376)
T ss_pred eEEEEECCCCee
Confidence 588899877654
No 488
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.58 E-value=0.33 Score=54.42 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=89.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCeeEEEee
Q 004207 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFT 637 (768)
Q Consensus 559 ~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~L-aTgs~DgtIrVWDl~t~~~~~~~~~ 637 (768)
....|-+.+.-++.++.+..|..||-. +.....+. .++...+++|..++..+ +.+-..+.+.+||+.+.......+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345677777668888888889999854 34443332 34556788888877654 4455678999999986432111111
Q ss_pred c-CCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEe-cCCCeeEEEEecCCCEEEEEEcCC
Q 004207 638 G-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIEN 704 (768)
Q Consensus 638 ~-h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~-~~~~i~sl~fsp~~~~llags~Dg 704 (768)
+ |.... +.|++.... ++.+...|.+.|++..+.+.+-... +...++++++.+.+ +.+.++.|.
T Consensus 116 g~~s~sl--l~wsKg~~e-l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~ 180 (615)
T KOG2247|consen 116 GTSSKSL--LAWSKGTPE-LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDN 180 (615)
T ss_pred CcchHHH--HhhccCCcc-ccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence 1 22222 678776654 4467788999999988765554443 55678899999874 444444443
No 489
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=81.18 E-value=60 Score=36.12 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=46.2
Q ss_pred CCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcE-EEEECCCCee--EEEE-e-cCCCeeEEEEe
Q 004207 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI-RYWSINNGSC--AGVF-K-CQSGATQMRFQ 691 (768)
Q Consensus 617 ~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I-~iWDl~sg~~--i~~~-~-~~~~i~sl~fs 691 (768)
.+|.+.-||..+.. .+.+...-.....|+.+|++..++++=..-..| ++| +...+. ...| . ..+..-.+..+
T Consensus 197 ~~GRl~~YD~~tK~--~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw-i~g~k~gt~EvFa~~LPG~PDNIR~~ 273 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKV--TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW-IKGPKAGTSEVFAEGLPGYPDNIRRD 273 (376)
T ss_pred CccceEEecCcccc--hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE-ecCCccCchhhHhhcCCCCCcceeEC
Confidence 45677777766533 334443445567899999998777554444333 445 332111 0111 1 24555567778
Q ss_pred cCCCEEEEEEc
Q 004207 692 PRLGRILAAAI 702 (768)
Q Consensus 692 p~~~~llags~ 702 (768)
++|.+.++-..
T Consensus 274 ~~G~fWVal~~ 284 (376)
T KOG1520|consen 274 STGHFWVALHS 284 (376)
T ss_pred CCCCEEEEEec
Confidence 88877665543
No 490
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.94 E-value=21 Score=45.14 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004207 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK 590 (768)
Q Consensus 556 ~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~ 590 (768)
.....++|+|.-.++|.+..+|.|++|-...-+..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEE
Confidence 34567899999999999999999999976544433
No 491
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.31 E-value=1.1e+02 Score=34.64 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=77.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCeeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee----
Q 004207 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---- 675 (768)
Q Consensus 600 V~sl~fspdg~~LaTgs~DgtIrVWDl~t~~~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~---- 675 (768)
...+..++++.+++.+.....++-||--.... ...-......++++.|.+++..++ ++ .+|.|. |....+..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W-~~~~~~~~~~l~~v~~~~dg~l~l-~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW-QPHNRASARRIQNMGWRADGGLWL-LT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcce-EEecCCCccceeeeeEcCCCCEEE-Ee-CCceEE-EecCCCCccccc
Confidence 44456677777776665443333444322111 111222345689999998877444 44 456543 44444431
Q ss_pred -EEEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCC
Q 004207 676 -AGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTV 751 (768)
Q Consensus 676 -i~~~~~---~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spd 751 (768)
...... ...+..+.|.+++ .+++++..|.|....- .++. |.... ....-....+.+.|.++
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~-~~~a~G~~G~v~~s~D-~G~t---------W~~~~----~~~~~~~~ly~v~f~~~ 381 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKK-EAWAAGGSGILLRSTD-GGKS---------WKRDK----GADNIAANLYSVKFFDD 381 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCC-cEEEEECCCcEEEeCC-CCcc---------eeEcc----ccCCCCcceeEEEEcCC
Confidence 222221 2347888888774 4667777776655432 2111 11100 00122345778888776
Q ss_pred CCEEEEEECCCcEEEe
Q 004207 752 NGMVASASHDKCVKIW 767 (768)
Q Consensus 752 g~~LaSgs~DG~V~IW 767 (768)
++.+ ..+.+|.|.-|
T Consensus 382 ~~g~-~~G~~G~il~~ 396 (398)
T PLN00033 382 KKGF-VLGNDGVLLRY 396 (398)
T ss_pred CceE-EEeCCcEEEEe
Confidence 5544 45677887665
No 492
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.19 E-value=1.2e+02 Score=34.97 Aligned_cols=108 Identities=15% Similarity=0.134 Sum_probs=60.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEec-----cCCCCEEEEEEcCCC------CEEEEEe----
Q 004207 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL------SRLATSS---- 616 (768)
Q Consensus 554 H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~--~~tl~-----~h~~~V~sl~fspdg------~~LaTgs---- 616 (768)
.-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+- .+|+..-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 344578899999998877765569999998655432 21111 124568999999873 2344432
Q ss_pred ------CCCcEEEEECCCCC----eeEEEeecC----CCCeEEEEEeCCCCeEEEEEeC
Q 004207 617 ------ADRTVRVWDTENPD----YSLRTFTGH----STTVMSLDFHPSKEDLLCSCDN 661 (768)
Q Consensus 617 ------~DgtIrVWDl~t~~----~~~~~~~~h----~~~V~slafsp~g~~lLaSgs~ 661 (768)
....|.-|.+.... .....+... ...-..|.|.|+|..+|.+|+.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 12345445543211 011122110 1224568899998755555543
No 493
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.11 E-value=65 Score=38.72 Aligned_cols=50 Identities=12% Similarity=0.041 Sum_probs=36.2
Q ss_pred CcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004207 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (768)
Q Consensus 577 g~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~t 628 (768)
-.|+||++. |..+..+.-....+..+.|+.+. .|++...||+++||++-.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 458888874 55555543334478899999875 566678999999999864
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.84 E-value=22 Score=42.18 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=46.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004207 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 557 ~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~~~V~sl~fspdg~~LaTgs~DgtIrVWDl~ 627 (768)
-++++.-+|.|..++.++.||.|++|+....+...... ...+-..+.|...| |+++..|..+.-|.-+
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence 47778888999999999999999999976544322221 22334456666444 6666677777777543
No 495
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.43 E-value=58 Score=30.94 Aligned_cols=113 Identities=17% Similarity=0.123 Sum_probs=66.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC--------eEEEEeccCCCCEEEEE---EcC--CCCEEEEEeCCCcEEEEECC
Q 004207 561 CHFSPDGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVR---FSP--SLSRLATSSADRTVRVWDTE 627 (768)
Q Consensus 561 l~fSpdg~~LaSgs~Dg~I~VWdl~t~--------~~~~tl~~h~~~V~sl~---fsp--dg~~LaTgs~DgtIrVWDl~ 627 (768)
-.|......|++++.-|+|.|++.... ..+..+. -...|++|+ |.| +...|+.|+ ...|..||++
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 345444456888888899999976532 2333443 345677775 443 244566664 5579999998
Q ss_pred CCCeeEEEeecCCCCeEEEEEeC---CCCeEEEEEeCCCcEEEEECCCCeeEEE
Q 004207 628 NPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (768)
Q Consensus 628 t~~~~~~~~~~h~~~V~slafsp---~g~~lLaSgs~Dg~I~iWDl~sg~~i~~ 678 (768)
.... + .++.-...|.++.+-. ....++++|+ +..|.-||..-.+...+
T Consensus 82 ~N~d-~-Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSD-L-FYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCch-h-hhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 7654 2 2222345677777632 1233554554 67787788765554443
No 496
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.34 E-value=67 Score=36.95 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=37.9
Q ss_pred eecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCee--EEEEe------cCCCeeEEEEecCC
Q 004207 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVFK------CQSGATQMRFQPRL 694 (768)
Q Consensus 636 ~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~--i~~~~------~~~~i~sl~fsp~~ 694 (768)
+...-...+.|+|.|++. +|++-...|.|++++..++.. +..+. .......|+++|+-
T Consensus 25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 333445678999999975 665554469999998655432 11111 24668899999874
No 497
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.87 E-value=46 Score=42.18 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=22.6
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceE
Q 004207 691 QPRLGRILAAAIENYISILDVETQVC 716 (768)
Q Consensus 691 sp~~~~llags~Dg~I~IwD~~t~~~ 716 (768)
..++..++++..||.+.+||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 67788899999999999999988754
No 498
>PLN02193 nitrile-specifier protein
Probab=78.76 E-value=1.3e+02 Score=34.67 Aligned_cols=200 Identities=11% Similarity=-0.031 Sum_probs=0.0
Q ss_pred EEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEecc---CCCCEEEEEEcCCCCEEEEEeCCCc-----EEEEEC
Q 004207 560 SCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSSADRT-----VRVWDT 626 (768)
Q Consensus 560 sl~fSpdg~~LaSgs~D-----g~I~VWdl~t~~~~~tl~~---h~~~V~sl~fspdg~~LaTgs~Dgt-----IrVWDl 626 (768)
+....-++.+++.|+.+ ..+.+||+.+.+-...-.. ....-...+..-++++++.|+.++. +.+||+
T Consensus 222 ~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~ 301 (470)
T PLN02193 222 VRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNI 301 (470)
T ss_pred eEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEEC
Q ss_pred CCCCeeEEE----eecCCCCeEEEEEeCCCCeEEEEEeCC----CcEEEEECCCCeeEEEEe----cCCCeeEEEEecCC
Q 004207 627 ENPDYSLRT----FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK----CQSGATQMRFQPRL 694 (768)
Q Consensus 627 ~t~~~~~~~----~~~h~~~V~slafsp~g~~lLaSgs~D----g~I~iWDl~sg~~i~~~~----~~~~i~sl~fsp~~ 694 (768)
.+....... ..........+.+. ..+++.++.+ ..|.+||+.+.+....-. ........+..-++
T Consensus 302 ~t~~W~~~~~~~~~~~~R~~~~~~~~~---gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~ 378 (470)
T PLN02193 302 VDKKWFHCSTPGDSFSIRGGAGLEVVQ---GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGK 378 (470)
T ss_pred CCCEEEeCCCCCCCCCCCCCcEEEEEC---CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECC
Q ss_pred CEEEEEEcCC--------------eEEEEECCCceEeeecceeEEeecCCCceEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 004207 695 GRILAAAIEN--------------YISILDVETQVCRLKLQTLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 760 (768)
Q Consensus 695 ~~llags~Dg--------------~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~H~~~I~sla~spdg~~LaSgs~ 760 (768)
..++.++... .+.+||+.+... -.+-.+......................+..+|+.|+.
T Consensus 379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W------~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~ 452 (470)
T PLN02193 379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW------ERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGK 452 (470)
T ss_pred EEEEECCccCCccccccCccceeccEEEEEcCcCEE------EEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCC
Q ss_pred CCcEEEeC
Q 004207 761 DKCVKIWK 768 (768)
Q Consensus 761 DG~V~IWD 768 (768)
++.=..+|
T Consensus 453 ~~~~~~~~ 460 (470)
T PLN02193 453 APTNDRFD 460 (470)
T ss_pred CCcccccc
No 499
>PLN02153 epithiospecifier protein
Probab=77.89 E-value=1.1e+02 Score=33.38 Aligned_cols=219 Identities=8% Similarity=-0.016 Sum_probs=0.0
Q ss_pred eeeEEEE----ecCCCCCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCeEEEEeccCCCCEE----EEEEcCC
Q 004207 544 TFTEFQL----IPASTSKVESCHFSPDGKLLATGGHDK-------KAVLWCTESFTVKSTLEEHTQWIT----DVRFSPS 608 (768)
Q Consensus 544 ~~~~~~~----l~~H~~~I~sl~fSpdg~~LaSgs~Dg-------~I~VWdl~t~~~~~tl~~h~~~V~----sl~fspd 608 (768)
.+..+.. .........++.+ ++++++.|+.+. .+.+||+.+.+-.........+-. ..+..-+
T Consensus 8 ~W~~~~~~~~~~P~pR~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~ 85 (341)
T PLN02153 8 GWIKVEQKGGKGPGPRCSHGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG 85 (341)
T ss_pred eEEEecCCCCCCCCCCCcceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC
Q ss_pred CCEEEEEeCC-----CcEEEEECCCCCeeEEEeecC---CCCeEEEEEeCCCCeEEEEEeCC-----------CcEEEEE
Q 004207 609 LSRLATSSAD-----RTVRVWDTENPDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDNN-----------SEIRYWS 669 (768)
Q Consensus 609 g~~LaTgs~D-----gtIrVWDl~t~~~~~~~~~~h---~~~V~slafsp~g~~lLaSgs~D-----------g~I~iWD 669 (768)
+++++.|+.+ ..|.+||+.+........... ..+....+..-.++.+++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Q ss_pred CCCCeeEEEEec----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCceEeeecceeEEeecCCCceEEecc----CCC
Q 004207 670 INNGSCAGVFKC----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQTLELWNMTENKTLTLSA----HDK 741 (768)
Q Consensus 670 l~sg~~i~~~~~----~~~i~sl~fsp~~~~llags~Dg~I~IwD~~t~~~~~~~~~I~iwd~~~~~~~~l~~----H~~ 741 (768)
..+.+-...-.. ..........-++..++.++.+..+ ...+........+.+||..+.+-..+.. ...
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~----~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSI----LPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccccc----ccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Q ss_pred CeeEEEEeCCCCEEEEEECC--------------CcEEEeC
Q 004207 742 LVSSLAASTVNGMVASASHD--------------KCVKIWK 768 (768)
Q Consensus 742 ~I~sla~spdg~~LaSgs~D--------------G~V~IWD 768 (768)
.....+..-++.+++.|+.. ..|.+||
T Consensus 242 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d 282 (341)
T PLN02153 242 RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALD 282 (341)
T ss_pred cceeeeEEECCEEEEECcccCCccccccccccccccEEEEE
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=77.75 E-value=6.8 Score=43.91 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC------CCEE-EEEEcCCCCEEEEEeCCCc
Q 004207 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT------QWIT-DVRFSPSLSRLATSSADRT 620 (768)
Q Consensus 548 ~~~l~~H~~~I~sl~fSpdg~~LaSgs~Dg~I~VWdl~t~~~~~tl~~h~------~~V~-sl~fspdg~~LaTgs~Dgt 620 (768)
+..+..-...|..+-..|||+++.+-+. ..+.|+++.+......--... ..|+ .+..-..+.-|++++.||.
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Q ss_pred EEEE-ECCCCC----eeEEEeecCCCCeEEEEEeCCCCeEEEEEeCCCcEEEEECCCCeeEEEEecCCCeeEEEEecCCC
Q 004207 621 VRVW-DTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (768)
Q Consensus 621 IrVW-Dl~t~~----~~~~~~~~h~~~V~slafsp~g~~lLaSgs~Dg~I~iWDl~sg~~i~~~~~~~~i~sl~fsp~~~ 695 (768)
|.-| |++.+. ..++.++-....+..+.-..+ +..|++-+..|++.++.....+.+..-..-..+.-++++|.+.
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccc
Q ss_pred EEEEEEcCCeEEEEECCC
Q 004207 696 RILAAAIENYISILDVET 713 (768)
Q Consensus 696 ~llags~Dg~I~IwD~~t 713 (768)
++++-.. |.|+++.+++
T Consensus 371 ~Ll~e~~-gki~~~~l~N 387 (733)
T COG4590 371 YLLSEDQ-GKIRLAQLEN 387 (733)
T ss_pred hheeecC-CceEEEEecC
Done!